Citrus Sinensis ID: 014447
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 424 | 2.2.26 [Sep-21-2011] | |||||||
| P17859 | 421 | Alpha-amylase OS=Vigna mu | N/A | no | 0.985 | 0.992 | 0.774 | 0.0 | |
| Q8VZ56 | 423 | Alpha-amylase 1 OS=Arabid | yes | no | 0.988 | 0.990 | 0.699 | 1e-176 | |
| P27933 | 436 | Alpha-amylase isozyme 3D | yes | no | 0.941 | 0.915 | 0.669 | 1e-168 | |
| P27932 | 440 | Alpha-amylase isozyme 3A | no | no | 1.0 | 0.963 | 0.628 | 1e-168 | |
| P27939 | 437 | Alpha-amylase isozyme 3C | no | no | 0.943 | 0.915 | 0.682 | 1e-167 | |
| P27937 | 438 | Alpha-amylase isozyme 3B | no | no | 0.943 | 0.913 | 0.675 | 1e-165 | |
| P04063 | 427 | Alpha-amylase type B isoz | N/A | no | 0.952 | 0.946 | 0.669 | 1e-164 | |
| P27934 | 437 | Alpha-amylase isozyme 3E | no | no | 0.983 | 0.954 | 0.623 | 1e-163 | |
| P04750 | 429 | Alpha-amylase type B isoz | N/A | no | 0.985 | 0.974 | 0.635 | 1e-161 | |
| A2YGY2 | 446 | Alpha-amylase isozyme 2A | N/A | no | 0.943 | 0.896 | 0.644 | 1e-158 |
| >sp|P17859|AMYA_VIGMU Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/422 (77%), Positives = 368/422 (87%), Gaps = 4/422 (0%)
Query: 1 MSTLKSFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHV 60
S L FC LL +F +SPALLFQGFNWESS K GGWYNSLKNSIPDL+NAGITHV
Sbjct: 4 FSRLSIFCLFISLLPLF---SSPALLFQGFNWESSKK-GGWYNSLKNSIPDLANAGITHV 59
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120
WLPPPSQSV+P+GY+PGRLYDLDASKYGS+ +LKSLI AF +KGIKCLAD+VINHRTAER
Sbjct: 60 WLPPPSQSVSPEGYLPGRLYDLDASKYGSKNELKSLIAAFHEKGIKCLADIVINHRTAER 119
Query: 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180
KDGRGIYCIFEGGT D R DWGPSFICR D YSDG GN+D+GE + APDIDHLNP+VQ
Sbjct: 120 KDGRGIYCIFEGGTPDSRQDWGPSFICRDDTAYSDGTGNNDSGEGYDAAPDIDHLNPQVQ 179
Query: 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
+ELS+WMNWLKTEIGFDGWRFDFVKGYAPSI+K+YME T PDFAVGEKWDS+SYG DGKP
Sbjct: 180 RELSEWMNWLKTEIGFDGWRFDFVKGYAPSISKIYMEQTKPDFAVGEKWDSISYGQDGKP 239
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
+ NQD HRGAL +WV++AGGA+ AFDFTTKGILQAAVQGELWRL D NGKPPG IG+ P+
Sbjct: 240 NYNQDSHRGALVNWVESAGGAITAFDFTTKGILQAAVQGELWRLIDPNGKPPGMIGVKPE 299
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAA 360
NAVTFIDNHDTGSTQRLWPFPSDKVM GYAYILTHPGTP IFYDHFFDWGLKE I+KL++
Sbjct: 300 NAVTFIDNHDTGSTQRLWPFPSDKVMQGYAYILTHPGTPSIFYDHFFDWGLKEQIAKLSS 359
Query: 361 VRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAV 420
+R RNGIN S V I+AS+ D+Y+A I +++++KIGPKMD+GNLIPS+ VA G DYAV
Sbjct: 360 IRLRNGINEKSTVKIMASEGDLYVAKIDNKIMVKIGPKMDLGNLIPSNLHVATSGQDYAV 419
Query: 421 WE 422
WE
Sbjct: 420 WE 421
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Vigna mungo (taxid: 3915) EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1 |
| >sp|Q8VZ56|AMY1_ARATH Alpha-amylase 1 OS=Arabidopsis thaliana GN=AMY1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 617 bits (1590), Expect = e-176, Method: Compositional matrix adjust.
Identities = 298/426 (69%), Positives = 350/426 (82%), Gaps = 7/426 (1%)
Query: 1 MSTLKSFCFLSFLLAIFLP-FT-SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGIT 58
M++L + F S L I P FT S LLFQ FNWES K GG+YNSL NSI D++NAGIT
Sbjct: 1 MTSLHTLLFSSLLFFIVFPTFTFSSTLLFQSFNWESWKKEGGFYNSLHNSIDDIANAGIT 60
Query: 59 HVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118
H+WLPPPSQSVAP+GY+PG+LYDL++SKYGS+A+LKSLI+A QKGIK LAD+VINHRTA
Sbjct: 61 HLWLPPPSQSVAPEGYLPGKLYDLNSSKYGSEAELKSLIKALNQKGIKALADIVINHRTA 120
Query: 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPR 178
ERKD + YC FEGGTSDDRLDW PSF+CR D ++ G GN DTG DF APDIDHLNPR
Sbjct: 121 ERKDDKCGYCYFEGGTSDDRLDWDPSFVCRNDPKFP-GTGNLDTGGDFDGAPDIDHLNPR 179
Query: 179 VQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDG 238
VQKELS+WMNWLKTEIGF GWRFD+V+GYA SITK+Y++NTSPDFAVGEKWD + YG DG
Sbjct: 180 VQKELSEWMNWLKTEIGFHGWRFDYVRGYASSITKLYVQNTSPDFAVGEKWDDMKYGGDG 239
Query: 239 KPDANQDGHRGALKDWVQAAGGAV-AAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGI 297
K D +Q+ HR LK W++ AGG V AFDFTTKGILQ+AV+GELWRLKDS GKPPG IGI
Sbjct: 240 KLDYDQNEHRSGLKQWIEEAGGGVLTAFDFTTKGILQSAVKGELWRLKDSQGKPPGMIGI 299
Query: 298 LPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISK 357
+P NAVTFIDNHD T R W FPSDKV+LGY YILTHPGTPCIFY+H+ +WGLKE+ISK
Sbjct: 300 MPGNAVTFIDNHD---TFRTWVFPSDKVLLGYVYILTHPGTPCIFYNHYIEWGLKESISK 356
Query: 358 LAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTD 417
L A+RN+NGI + S V I A++AD+Y+A I D+VIMKIGPK D+G L+PS+F +A G D
Sbjct: 357 LVAIRNKNGIGSTSSVTIKAAEADLYLAMIDDKVIMKIGPKQDVGTLVPSNFALAYSGLD 416
Query: 418 YAVWEK 423
+AVWEK
Sbjct: 417 FAVWEK 422
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Possesses alpha-amylase activity in vitro, but seems not required for breakdown of transitory starch in leaves. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P27933|AMY3D_ORYSJ Alpha-amylase isozyme 3D OS=Oryza sativa subsp. japonica GN=AMY1.3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 592 bits (1525), Expect = e-168, Method: Compositional matrix adjust.
Identities = 267/399 (66%), Positives = 318/399 (79%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+LFQGFNWES + GGWYN LK + D++ AG+THVWLPPPS SVAPQGYMPGRLYDLDA
Sbjct: 27 VLFQGFNWESWKQQGGWYNMLKGQVDDIAKAGVTHVWLPPPSHSVAPQGYMPGRLYDLDA 86
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
SKYG+ A+LKSLI AF KG++C+AD+VINHR AE+KD RG+YC+FEGGT DDRLDWGP
Sbjct: 87 SKYGTAAELKSLIAAFHGKGVQCVADVVINHRCAEKKDARGVYCVFEGGTPDDRLDWGPG 146
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
IC D +YSDG G+ DTGE F APDIDHLNPRVQ+EL+DW+NWLK+++GFDGWR DF
Sbjct: 147 MICSDDTQYSDGTGHRDTGEGFGAAPDIDHLNPRVQRELTDWLNWLKSDVGFDGWRLDFA 206
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAA 264
KGY+ I K+Y+E+ P F V E W+SLSY DGKP ANQD R L +WV A GG
Sbjct: 207 KGYSTDIAKMYVESCKPGFVVAEIWNSLSYNGDGKPAANQDQGRQELVNWVNAVGGPAMT 266
Query: 265 FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDK 324
FDFTTKG+LQA VQGELWRL+D NGK G IG LP+ AVTF+DNHDTGSTQ+LWPFPSDK
Sbjct: 267 FDFTTKGLLQAGVQGELWRLRDGNGKAAGMIGWLPEKAVTFVDNHDTGSTQKLWPFPSDK 326
Query: 325 VMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYI 384
VM GYAYILTHPG PCIFYDH FDW LK+ I+ LAA+R RNGIN S++ I+ +DAD Y+
Sbjct: 327 VMQGYAYILTHPGVPCIFYDHMFDWNLKQEITALAAIRERNGINAGSKLRIVVADADAYV 386
Query: 385 AAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 423
A + ++V++KIG + D+GN +PSDF G DY+VWEK
Sbjct: 387 AVVDEKVMVKIGTRYDVGNAVPSDFHQTVHGKDYSVWEK 425
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Important for breakdown of endosperm starch during germination. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P27932|AMY3A_ORYSJ Alpha-amylase isozyme 3A OS=Oryza sativa subsp. japonica GN=AMY1.2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 590 bits (1521), Expect = e-168, Method: Compositional matrix adjust.
Identities = 267/425 (62%), Positives = 333/425 (78%), Gaps = 1/425 (0%)
Query: 1 MSTLKSFCFLSFL-LAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITH 59
M+ L F ++ L L + +LFQGFNW+S K GGWYN LK+ + D+++AG+TH
Sbjct: 5 MAALCGFLLVALLWLTPDVAHAQTQILFQGFNWDSWKKQGGWYNMLKDQVGDIASAGVTH 64
Query: 60 VWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119
VWLPPP+ SV+PQGYMPGRLYDL+ASKYG++A+LKSLI AF KGIKC+AD+V+NHR A+
Sbjct: 65 VWLPPPTHSVSPQGYMPGRLYDLNASKYGTKAELKSLIAAFHAKGIKCVADIVVNHRCAD 124
Query: 120 RKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRV 179
KDGRG+YCIF+GG LDWGPS IC D +YSDG G+ DTG DF APDIDHLNP V
Sbjct: 125 DKDGRGVYCIFKGGGPRGCLDWGPSMICCDDTQYSDGTGHRDTGADFAAAPDIDHLNPLV 184
Query: 180 QKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGK 239
Q+ELSDW+ WL+ ++GFDGWR DF KGY+ ++ + Y++N P F V E W+SLSY DGK
Sbjct: 185 QRELSDWLRWLRRDVGFDGWRLDFAKGYSAAVARTYVQNARPSFVVAEIWNSLSYDGDGK 244
Query: 240 PDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILP 299
P ANQDG R L +WV+ GG AFDFTTKGILQ+AVQGELWR++D +GK PG IG P
Sbjct: 245 PAANQDGQRQELVNWVKQVGGPATAFDFTTKGILQSAVQGELWRMRDKDGKAPGMIGWYP 304
Query: 300 QNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLA 359
+ AVTF+DNHDTGSTQR+WPFPSDKV+LGYAYILTHPG PCIFYDH FDW LK+ I+ LA
Sbjct: 305 EKAVTFVDNHDTGSTQRMWPFPSDKVILGYAYILTHPGVPCIFYDHVFDWNLKQEINALA 364
Query: 360 AVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYA 419
A R RNGIN S++ +LA+++D+Y+A + +RVI KIGP++D+GN+IPSDF + A G DY
Sbjct: 365 ATRKRNGINAGSKLRVLAAESDMYVAMVDERVITKIGPRIDVGNIIPSDFHIVAHGNDYC 424
Query: 420 VWEKN 424
VWEK+
Sbjct: 425 VWEKS 429
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Important for breakdown of endosperm starch during germination. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P27939|AMY3C_ORYSJ Alpha-amylase isozyme 3C OS=Oryza sativa subsp. japonica GN=AMY1.7 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 589 bits (1519), Expect = e-167, Method: Compositional matrix adjust.
Identities = 273/400 (68%), Positives = 318/400 (79%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+LFQGFNWES K GGWYN L + + D++ G+THVWLPPPS SVAPQGYMPGRLYDLDA
Sbjct: 28 VLFQGFNWESWKKQGGWYNFLHSHVDDIAATGVTHVWLPPPSHSVAPQGYMPGRLYDLDA 87
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
SKYG+ A+L+SLI AF K IKC+AD+VINHR A+ KD RGIYCIFEGGT D RLDWGP
Sbjct: 88 SKYGTGAELRSLIAAFHSKSIKCVADIVINHRCADYKDSRGIYCIFEGGTPDSRLDWGPD 147
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
IC D +YS+G+G+ DTG DF APDIDHLN RVQ ELSDW+NWLK+++GFDGWR DF
Sbjct: 148 MICSDDTQYSNGRGHRDTGADFGAAPDIDHLNTRVQTELSDWLNWLKSDVGFDGWRLDFA 207
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAA 264
KGY+ ++ K Y++NT P F V E W ++ Y +G+P NQDG R L +W QA GG +A
Sbjct: 208 KGYSATVAKTYVDNTDPSFVVAEIWSNMRYDGNGEPSWNQDGDRQELVNWAQAVGGPASA 267
Query: 265 FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDK 324
FDFTTKG LQAAVQGELWR+KD NGK PG IG LP+ AVTFIDNHDTGSTQ WPFPSDK
Sbjct: 268 FDFTTKGELQAAVQGELWRMKDGNGKAPGMIGWLPEKAVTFIDNHDTGSTQNSWPFPSDK 327
Query: 325 VMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYI 384
VM GYAYILTHPG PCIFYDH FDW LK+ IS LAAVR+RNGI+ S++NILA+D DVY+
Sbjct: 328 VMQGYAYILTHPGVPCIFYDHVFDWNLKQEISTLAAVRSRNGIHPGSKLNILAADGDVYV 387
Query: 385 AAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEKN 424
A I D+VI KIG + D+GNLIPSDF V A G +Y VWEK+
Sbjct: 388 AMIDDKVITKIGTRYDVGNLIPSDFHVVAHGNNYCVWEKS 427
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Important for breakdown of endosperm starch during germination. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P27937|AMY3B_ORYSJ Alpha-amylase isozyme 3B OS=Oryza sativa subsp. japonica GN=AMY1.6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 583 bits (1502), Expect = e-165, Method: Compositional matrix adjust.
Identities = 270/400 (67%), Positives = 316/400 (79%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+LFQGFNWES K GGWYN L + D++ G+THVWLPPPS SVAPQGYMPGRLYDLDA
Sbjct: 28 VLFQGFNWESWKKQGGWYNFLHGHVDDIAATGVTHVWLPPPSHSVAPQGYMPGRLYDLDA 87
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
SKYG+ A+L+SLI AF KGIKC+AD+VINHR A+ KD RGIYCIFEGGT D RLDWGP
Sbjct: 88 SKYGTGAELRSLIAAFHSKGIKCVADIVINHRCADYKDSRGIYCIFEGGTPDSRLDWGPD 147
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
IC D +YS+G+G+ DTG DF APDIDHLN RVQ ELSDW+NWLK+++GFDGWR DF
Sbjct: 148 MICSDDTQYSNGRGHRDTGADFGAAPDIDHLNTRVQTELSDWLNWLKSDVGFDGWRLDFA 207
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAA 264
KGY+ ++ K Y++NT P F V E W ++ Y +G+P NQDG R L +W QA GG +A
Sbjct: 208 KGYSAAVAKTYVDNTDPSFVVAEIWSNMRYDGNGEPSWNQDGDRQELVNWAQAVGGPASA 267
Query: 265 FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDK 324
FDFTTKG LQAAVQGELWR+KD NGK PG IG LP+ AVTFIDNHDTGSTQ WPFPSDK
Sbjct: 268 FDFTTKGELQAAVQGELWRMKDGNGKAPGMIGWLPEKAVTFIDNHDTGSTQNSWPFPSDK 327
Query: 325 VMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYI 384
VM GYAYILTHPG PCIFYDH FDW LK+ IS LAAVR+RN I+ S++ ILA++ DVY+
Sbjct: 328 VMQGYAYILTHPGVPCIFYDHVFDWNLKQEISTLAAVRSRNEIHPGSKLKILAAEGDVYV 387
Query: 385 AAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEKN 424
A I D+VI KIG + D+GNLIPSDF V A G +Y +WEK+
Sbjct: 388 AMIDDKVITKIGTRYDVGNLIPSDFHVVAHGNNYCIWEKS 427
|
Important for breakdown of endosperm starch during germination. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P04063|AMY2_HORVU Alpha-amylase type B isozyme OS=Hordeum vulgare GN=AMY1.2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 579 bits (1493), Expect = e-164, Method: Compositional matrix adjust.
Identities = 272/406 (66%), Positives = 317/406 (78%), Gaps = 2/406 (0%)
Query: 20 FTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRL 79
S +LFQGFNWES GGWYN L + D++ AGITHVWLPP SQSVA QGYMPGRL
Sbjct: 21 LASGQVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGITHVWLPPASQSVAEQGYMPGRL 80
Query: 80 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRL 139
YDLDASKYG++A LKSLI A KG+K +AD+VINHRTAE KDGRGIYCIFEGGT D RL
Sbjct: 81 YDLDASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGGTPDARL 140
Query: 140 DWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGW 199
DWGP ICR D+ Y+DG GN DTG DF APDIDHLN RVQKEL +W+NWLK +IGFDGW
Sbjct: 141 DWGPHMICRDDRPYADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADIGFDGW 200
Query: 200 RFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAG 259
RFDF KGY+ + K+Y++ + P FAV E W SL+YG DGKP+ NQD HR L +WV G
Sbjct: 201 RFDFAKGYSADVAKIYIDRSEPSFAVAEIWTSLAYGGDGKPNLNQDQHRQELVNWVDKVG 260
Query: 260 GA--VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRL 317
G FDFTTKGIL AV+GELWRL+ ++GK PG IG P AVTF+DNHDTGSTQ +
Sbjct: 261 GKGPATTFDFTTKGILNVAVEGELWRLRGTDGKAPGMIGWWPAKAVTFVDNHDTGSTQHM 320
Query: 318 WPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILA 377
WPFPSD+VM GYAYILTHPGTPCIFYDHFFDWGLKE I +L +VR R+GI+ S++ I+
Sbjct: 321 WPFPSDRVMQGYAYILTHPGTPCIFYDHFFDWGLKEEIDRLVSVRTRHGIHNESKLQIIE 380
Query: 378 SDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 423
+DAD+Y+A I +VI+K+GP+ D+GNLIP FKVAA G DYAVWEK
Sbjct: 381 ADADLYLAEIDGKVIVKLGPRYDVGNLIPGGFKVAAHGNDYAVWEK 426
|
Hordeum vulgare (taxid: 4513) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P27934|AMY3E_ORYSJ Alpha-amylase isozyme 3E OS=Oryza sativa subsp. japonica GN=AMY1.4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 576 bits (1485), Expect = e-163, Method: Compositional matrix adjust.
Identities = 260/417 (62%), Positives = 317/417 (76%)
Query: 8 CFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ 67
C + +L + +LFQGFNWES K GGWYN L + ++++ G THVWLPPPS
Sbjct: 10 CVVFAVLCLASSLAQAQVLFQGFNWESWRKQGGWYNFLHEKVEEIASTGATHVWLPPPSH 69
Query: 68 SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIY 127
SV+PQGYMPGRLYDLDASKYG++A+LKSLI+AF K ++CLAD+VINHR A+ KD RG+Y
Sbjct: 70 SVSPQGYMPGRLYDLDASKYGTEAELKSLIEAFHDKNVECLADIVINHRCADYKDSRGVY 129
Query: 128 CIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWM 187
C+FEGGT D RLDWGP IC D +YS+G+G+ DTG F APDIDHLNPRVQ+EL+DW+
Sbjct: 130 CVFEGGTPDGRLDWGPDMICSDDTQYSNGRGHRDTGAGFGAAPDIDHLNPRVQRELTDWL 189
Query: 188 NWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGH 247
NWL+T++GFDGWR DF KGY+ + ++Y++NT+P F VGE W SL Y DGKP NQD
Sbjct: 190 NWLRTDLGFDGWRLDFAKGYSAPLARIYVDNTNPTFVVGEIWSSLIYNGDGKPSTNQDAD 249
Query: 248 RGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFID 307
R L +WV+ G AFDFTTKGILQAAVQGELWRL D NGK PG +G +P AVTF+D
Sbjct: 250 RQELVNWVEGVGKPATAFDFTTKGILQAAVQGELWRLHDGNGKAPGLMGWMPDQAVTFVD 309
Query: 308 NHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGI 367
NHDTGSTQ LWPFPSDKVM GYAYILTHPG PCIFYDH FDW L+ I+ LA +R+RNGI
Sbjct: 310 NHDTGSTQSLWPFPSDKVMQGYAYILTHPGIPCIFYDHVFDWNLQHEIATLAEIRSRNGI 369
Query: 368 NTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEKN 424
+ S ++IL ++ D+Y+A I +VI K+GP+ D G +IPSDF V A G DY VWEK
Sbjct: 370 HAESTLDILKAEGDIYVAMIDGKVITKLGPRYDAGGIIPSDFHVVAHGNDYCVWEKE 426
|
Important for breakdown of endosperm starch during germination. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P04750|AMY6_HORVU Alpha-amylase type B isozyme OS=Hordeum vulgare GN=AMY1.6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 570 bits (1468), Expect = e-161, Method: Compositional matrix adjust.
Identities = 268/422 (63%), Positives = 318/422 (75%), Gaps = 4/422 (0%)
Query: 6 SFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPP 65
S LL + S +LFQGFNWES GGWYN L + D++ AG+THVWLPP
Sbjct: 7 SLSLFIVLLGLSCSLASGQVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGVTHVWLPPA 66
Query: 66 SQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG 125
SQSVA QGYMPGRLYDLDASKYG++A LKSLI A K +K +AD+VINHRTAERKDGRG
Sbjct: 67 SQSVAEQGYMPGRLYDLDASKYGNKAQLKSLIGALHGKAVKAIADIVINHRTAERKDGRG 126
Query: 126 IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGN--DDTGEDFQPAPDIDHLNPRVQKEL 183
IYCIFEGGT D RLDWGP ICR D+ Y DG GN T DF APDIDHLNPRVQKEL
Sbjct: 127 IYCIFEGGTPDARLDWGPHMICRDDRPYPDGTGNRPTRTRADFGAAPDIDHLNPRVQKEL 186
Query: 184 SDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDAN 243
+W+NWL+T+ GFDGWRFDF KGY+ + K+Y++ + P FAV E W SL+YG DGKP+ N
Sbjct: 187 VEWLNWLRTDDGFDGWRFDFAKGYSADVAKIYVDRSEPSFAVAEIWTSLAYGGDGKPNLN 246
Query: 244 QDGHRGALKDWVQAAGGA--VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQN 301
QD HR L +WV GG+ FDFTTKGIL AV+GELWRL+ ++GK PG IG P
Sbjct: 247 QDPHRQELVNWVNKVGGSGPATTFDFTTKGILNVAVEGELWRLRGTDGKAPGMIGWWPAK 306
Query: 302 AVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAV 361
AVTF+DNHDTGSTQ +WPFPSD+VM GYAYILTHPG PCIFYDHFFDWGLKE I +L ++
Sbjct: 307 AVTFVDNHDTGSTQHMWPFPSDRVMQGYAYILTHPGNPCIFYDHFFDWGLKEEIDRLVSI 366
Query: 362 RNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVW 421
R R GI++ S++ I+ +DAD+Y+A I +VI+K+GP+ D+G+LIP FKV A G DYAVW
Sbjct: 367 RTRQGIHSESKLQIMEADADLYLAEIEGKVIVKLGPRYDVGHLIPEGFKVVAHGNDYAVW 426
Query: 422 EK 423
EK
Sbjct: 427 EK 428
|
Hordeum vulgare (taxid: 4513) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A2YGY2|AMY2A_ORYSI Alpha-amylase isozyme 2A OS=Oryza sativa subsp. indica GN=AMYC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 557 bits (1435), Expect = e-158, Method: Compositional matrix adjust.
Identities = 261/405 (64%), Positives = 308/405 (76%), Gaps = 5/405 (1%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+LFQGFNWES ++GGWYN L + D+ AG+THVWLPPPS SV+ QGYMPGRLYDLDA
Sbjct: 24 ILFQGFNWESWRQSGGWYNLLMGKVDDIVAAGVTHVWLPPPSHSVSTQGYMPGRLYDLDA 83
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
S+YG+ +LKSLI A KGI+ +AD+VINHR A+ KD RGIYCIFEGGT D RLDWGP
Sbjct: 84 SRYGTSMELKSLISALHGKGIQAIADVVINHRCADYKDSRGIYCIFEGGTPDGRLDWGPH 143
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKT-EIGFDGWRFDF 203
ICR D ++SDG GN DTG DF APDIDHLN VQ+EL+DW+ WLK+ E+GFD WR DF
Sbjct: 144 MICRDDTQFSDGTGNLDTGADFAAAPDIDHLNGVVQRELTDWLLWLKSDEVGFDAWRLDF 203
Query: 204 VKGYAPSITKVYMENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAV 262
+GY+P + KVY+E T+P AV E WDS++YG DGKP+ NQD HR AL DWV GG
Sbjct: 204 ARGYSPEVAKVYIEGTTPVGLAVAELWDSMAYGGDGKPEYNQDAHRQALVDWVDRVGGTA 263
Query: 263 AA---FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP 319
+A FDFTTKGI+ AV+GELWRL D GK PG IG P AVTF+DNHDTGSTQ++WP
Sbjct: 264 SAGMVFDFTTKGIMNTAVEGELWRLIDQQGKAPGVIGWWPAKAVTFVDNHDTGSTQQMWP 323
Query: 320 FPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASD 379
FPSDKVM GYAYILTHPG PCIFYDHFFDWGLKE I+ L AVR RNG+ S + I+ D
Sbjct: 324 FPSDKVMQGYAYILTHPGNPCIFYDHFFDWGLKEQIAALVAVRQRNGVTATSSLKIMLHD 383
Query: 380 ADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEKN 424
AD Y+A I +V+MKIG + D+ +LIP F +AA G YAVWEK+
Sbjct: 384 ADAYVAEIDGKVVMKIGSRYDVSSLIPPGFHLAAHGNGYAVWEKS 428
|
Important for breakdown of endosperm starch during germination. Oryza sativa subsp. indica (taxid: 39946) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 424 | ||||||
| 224137490 | 423 | predicted protein [Populus trichocarpa] | 0.992 | 0.995 | 0.798 | 0.0 | |
| 224063525 | 404 | predicted protein [Populus trichocarpa] | 0.943 | 0.990 | 0.835 | 0.0 | |
| 30962522 | 421 | alpha-amylase [Vigna angularis] | 0.985 | 0.992 | 0.779 | 0.0 | |
| 255538306 | 422 | alpha-amylase, putative [Ricinus communi | 0.983 | 0.988 | 0.783 | 0.0 | |
| 113781 | 421 | RecName: Full=Alpha-amylase; AltName: Fu | 0.985 | 0.992 | 0.774 | 0.0 | |
| 228404 | 421 | alpha amylase | 0.985 | 0.992 | 0.772 | 0.0 | |
| 255538308 | 1113 | pentatricopeptide repeat-containing prot | 0.981 | 0.373 | 0.772 | 0.0 | |
| 357437821 | 421 | Alpha-amylase [Medicago truncatula] gi|3 | 0.992 | 1.0 | 0.770 | 0.0 | |
| 388508160 | 421 | unknown [Medicago truncatula] | 0.992 | 1.0 | 0.770 | 0.0 | |
| 3769330 | 420 | alpha-amylase [Phaseolus vulgaris] | 0.983 | 0.992 | 0.751 | 0.0 |
| >gi|224137490|ref|XP_002327139.1| predicted protein [Populus trichocarpa] gi|222835454|gb|EEE73889.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/422 (79%), Positives = 374/422 (88%), Gaps = 1/422 (0%)
Query: 3 TLKSFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWL 62
+ +FCF S L++F TS LLFQGFNWES NKAGGWYNSLKNS+PDL+NAGITHVWL
Sbjct: 2 SFLTFCFFSLFLSVFPLLTSSYLLFQGFNWESCNKAGGWYNSLKNSVPDLANAGITHVWL 61
Query: 63 PPPSQSVAPQG-YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK 121
PP SQSVAPQG YMPGRLYDL AS+YGSQ +LKSLI F QKGIKCLAD+VINHRTAE++
Sbjct: 62 PPSSQSVAPQGRYMPGRLYDLSASRYGSQDELKSLIGDFNQKGIKCLADIVINHRTAEKQ 121
Query: 122 DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQK 181
D RGI+ +FEGGTSDDRLDWGPSFIC D YSDG+GN D+G+DF+PAPDIDHLNPRVQ+
Sbjct: 122 DERGIWSVFEGGTSDDRLDWGPSFICGDDTAYSDGKGNPDSGDDFEPAPDIDHLNPRVQR 181
Query: 182 ELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPD 241
ELSDWMNWLK+EIGFDGWRFDFVKGYAPS+TK+YMENTSPDFAVGEKWDSL+YG DGK D
Sbjct: 182 ELSDWMNWLKSEIGFDGWRFDFVKGYAPSVTKIYMENTSPDFAVGEKWDSLAYGQDGKLD 241
Query: 242 ANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQN 301
NQD HRG++KDW+QAAGGAV AFDFT+KGILQAAVQGELWRLKDSNGKPPG IG+LPQN
Sbjct: 242 YNQDAHRGSIKDWIQAAGGAVTAFDFTSKGILQAAVQGELWRLKDSNGKPPGLIGLLPQN 301
Query: 302 AVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAV 361
AVTFIDNHDTGSTQ++WPFPSDKVM GYAYILTHPGTP IFYDHFFDWGLKE I KLA +
Sbjct: 302 AVTFIDNHDTGSTQQIWPFPSDKVMQGYAYILTHPGTPSIFYDHFFDWGLKEEIGKLATI 361
Query: 362 RNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVW 421
R GI +AS VNILASDAD+Y+AAI D +IMKIGPK D+GNLIPS+F+VA GTDY VW
Sbjct: 362 RKNYGIGSASTVNILASDADLYVAAINDNIIMKIGPKTDLGNLIPSNFQVATSGTDYCVW 421
Query: 422 EK 423
K
Sbjct: 422 VK 423
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224063525|ref|XP_002301187.1| predicted protein [Populus trichocarpa] gi|222842913|gb|EEE80460.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/400 (83%), Positives = 361/400 (90%)
Query: 24 ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD 83
+++QGFNWES N+AGGWYNSLKN +PDL+NAGITHVWLPP SQSVAPQGYMPGRLYDL
Sbjct: 4 VIVWQGFNWESCNQAGGWYNSLKNLVPDLANAGITHVWLPPASQSVAPQGYMPGRLYDLS 63
Query: 84 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGP 143
ASKYGSQ +LKSLI AF QKGIKCLAD+VINHRTAE++DGRGI+CIFEGGTSDDRLDWGP
Sbjct: 64 ASKYGSQGELKSLIGAFHQKGIKCLADIVINHRTAEKQDGRGIWCIFEGGTSDDRLDWGP 123
Query: 144 SFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203
S IC D YSDG+GN DTG DF APDIDHLNPRVQKELSDWMNWLK+EIGFDGWRFDF
Sbjct: 124 SLICSDDTAYSDGKGNPDTGGDFGGAPDIDHLNPRVQKELSDWMNWLKSEIGFDGWRFDF 183
Query: 204 VKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVA 263
VKGYAPSITK+YMENTSPDFAVGEKWDSL+YG DGKPD NQD HRG LKDW+QAAGGAV
Sbjct: 184 VKGYAPSITKIYMENTSPDFAVGEKWDSLAYGQDGKPDYNQDAHRGGLKDWIQAAGGAVT 243
Query: 264 AFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD 323
AFDFTTKGILQ AVQGELWRLKDSNGKPPG IG+LPQNAVTFIDNHDTGSTQ+LWPFPSD
Sbjct: 244 AFDFTTKGILQDAVQGELWRLKDSNGKPPGLIGLLPQNAVTFIDNHDTGSTQKLWPFPSD 303
Query: 324 KVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVY 383
KVM GYAYILTHPGTP IFYDHFFDWGLKE I KLA +R +GI +AS VNILASDAD+Y
Sbjct: 304 KVMQGYAYILTHPGTPSIFYDHFFDWGLKEEIGKLATIRKTSGIGSASTVNILASDADLY 363
Query: 384 IAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 423
+AAI +IMKIGPKMD+GNLIPS+F+VAA GTDY VW K
Sbjct: 364 VAAIDGNMIMKIGPKMDLGNLIPSNFQVAASGTDYCVWVK 403
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30962522|dbj|BAC76729.1| alpha-amylase [Vigna angularis] | Back alignment and taxonomy information |
|---|
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/422 (77%), Positives = 369/422 (87%), Gaps = 4/422 (0%)
Query: 1 MSTLKSFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHV 60
S L FC LL +F +SPALLFQGFNWESS K GGWYNSLKNSIPDL+NAGITHV
Sbjct: 4 FSRLSIFCLFISLLPLF---SSPALLFQGFNWESSKK-GGWYNSLKNSIPDLANAGITHV 59
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120
WLPPPSQSV+P+GY+PGRLYDLDAS+YGS+ +LKSLI AF +KGIKCLAD+VINHRTAER
Sbjct: 60 WLPPPSQSVSPEGYLPGRLYDLDASRYGSKNELKSLIAAFYEKGIKCLADIVINHRTAER 119
Query: 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180
KDGRGIYCIFEGGT D RLDWGPSFICR D YSDG GN+D+GE + APDIDHLNP+VQ
Sbjct: 120 KDGRGIYCIFEGGTPDSRLDWGPSFICRDDTAYSDGTGNNDSGEGYDAAPDIDHLNPQVQ 179
Query: 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
+ELS+WMNWLKTEIGFDGWRFDFVKGYAPSI+K+YME T PDFAVGEKWDSLS G DGKP
Sbjct: 180 RELSEWMNWLKTEIGFDGWRFDFVKGYAPSISKIYMEQTRPDFAVGEKWDSLSSGQDGKP 239
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
+ NQD HRGAL +WV++AGGA+ AFDFTTKGILQAAVQGELWRL D NGKPPG IG+ P+
Sbjct: 240 NYNQDSHRGALVNWVESAGGAITAFDFTTKGILQAAVQGELWRLIDPNGKPPGMIGVKPE 299
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAA 360
NAVTFIDNHDTGSTQRLWPFPSDKVM GYAYILTHPGTP IFYDHFFDWGLKE I+KL++
Sbjct: 300 NAVTFIDNHDTGSTQRLWPFPSDKVMQGYAYILTHPGTPSIFYDHFFDWGLKEQIAKLSS 359
Query: 361 VRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAV 420
+R RNGIN S V ILAS+ D+Y+A I +++++KIGPKMD+GNLIPS+F VA G DYAV
Sbjct: 360 IRVRNGINEKSTVKILASEGDLYVAKIDNKIMVKIGPKMDLGNLIPSNFHVATSGQDYAV 419
Query: 421 WE 422
WE
Sbjct: 420 WE 421
|
Source: Vigna angularis Species: Vigna angularis Genus: Vigna Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538306|ref|XP_002510218.1| alpha-amylase, putative [Ricinus communis] gi|223550919|gb|EEF52405.1| alpha-amylase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/420 (78%), Positives = 370/420 (88%), Gaps = 3/420 (0%)
Query: 7 FCFLS--FLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPP 64
FLS +LL+IF +TS A+LFQGFNWES NK GGWYNSLKN +PD+++AGITHVWLPP
Sbjct: 1 MTFLSWFYLLSIFPLYTSAAVLFQGFNWESCNKEGGWYNSLKNFVPDIASAGITHVWLPP 60
Query: 65 PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR 124
SQSVAPQGYMPGRLYDL SKYG+Q +LKSLIQA QKGIKCLAD+VINHRTAE++D R
Sbjct: 61 SSQSVAPQGYMPGRLYDLSVSKYGNQDELKSLIQALHQKGIKCLADIVINHRTAEKQDER 120
Query: 125 GIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELS 184
GI+CIFEGGT+DDRLDWGPSFICR D YSDG+GN DTG DF+PAPDIDHLNPRVQ+ELS
Sbjct: 121 GIWCIFEGGTADDRLDWGPSFICRDDTAYSDGKGNPDTGGDFEPAPDIDHLNPRVQQELS 180
Query: 185 DWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQ 244
DWMNWLK+EIGFDGWRFD+VKGYAPSITK+YM T+PDFAVGEKWDSLSYG D KPD NQ
Sbjct: 181 DWMNWLKSEIGFDGWRFDYVKGYAPSITKIYMGKTTPDFAVGEKWDSLSYGQDRKPDYNQ 240
Query: 245 DGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVT 304
DGHR ALKDW+QAAGG + AFDFTTKGILQAAVQGELWRLKDSNG PPG IG +PQNAVT
Sbjct: 241 DGHRNALKDWIQAAGGVITAFDFTTKGILQAAVQGELWRLKDSNGNPPGLIGTMPQNAVT 300
Query: 305 FIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNR 364
FIDNHDTGSTQ+LWPFPSDKVM GYAYILTHPG P IFYDHFFDWGLKE IS+LA++R
Sbjct: 301 FIDNHDTGSTQQLWPFPSDKVMQGYAYILTHPGIPSIFYDHFFDWGLKEPISRLASIRKS 360
Query: 365 NGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPS-DFKVAADGTDYAVWEK 423
GI++ SRV I+A+++D+Y+AAI D VIMKIGPKMD+GNL+PS +F+VA G YAVW K
Sbjct: 361 YGIDSKSRVKIVAAESDLYMAAINDNVIMKIGPKMDLGNLLPSKEFQVATSGESYAVWVK 420
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|113781|sp|P17859.1|AMYA_VIGMU RecName: Full=Alpha-amylase; AltName: Full=1,4-alpha-D-glucan glucanohydrolase; Flags: Precursor gi|22060|emb|CAA37217.1| unnamed protein product [Vigna mungo] gi|437945|emb|CAA51734.1| alpha-amylase [Vigna mungo] gi|745990|prf||2016476A alpha amylase | Back alignment and taxonomy information |
|---|
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/422 (77%), Positives = 368/422 (87%), Gaps = 4/422 (0%)
Query: 1 MSTLKSFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHV 60
S L FC LL +F +SPALLFQGFNWESS K GGWYNSLKNSIPDL+NAGITHV
Sbjct: 4 FSRLSIFCLFISLLPLF---SSPALLFQGFNWESSKK-GGWYNSLKNSIPDLANAGITHV 59
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120
WLPPPSQSV+P+GY+PGRLYDLDASKYGS+ +LKSLI AF +KGIKCLAD+VINHRTAER
Sbjct: 60 WLPPPSQSVSPEGYLPGRLYDLDASKYGSKNELKSLIAAFHEKGIKCLADIVINHRTAER 119
Query: 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180
KDGRGIYCIFEGGT D R DWGPSFICR D YSDG GN+D+GE + APDIDHLNP+VQ
Sbjct: 120 KDGRGIYCIFEGGTPDSRQDWGPSFICRDDTAYSDGTGNNDSGEGYDAAPDIDHLNPQVQ 179
Query: 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
+ELS+WMNWLKTEIGFDGWRFDFVKGYAPSI+K+YME T PDFAVGEKWDS+SYG DGKP
Sbjct: 180 RELSEWMNWLKTEIGFDGWRFDFVKGYAPSISKIYMEQTKPDFAVGEKWDSISYGQDGKP 239
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
+ NQD HRGAL +WV++AGGA+ AFDFTTKGILQAAVQGELWRL D NGKPPG IG+ P+
Sbjct: 240 NYNQDSHRGALVNWVESAGGAITAFDFTTKGILQAAVQGELWRLIDPNGKPPGMIGVKPE 299
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAA 360
NAVTFIDNHDTGSTQRLWPFPSDKVM GYAYILTHPGTP IFYDHFFDWGLKE I+KL++
Sbjct: 300 NAVTFIDNHDTGSTQRLWPFPSDKVMQGYAYILTHPGTPSIFYDHFFDWGLKEQIAKLSS 359
Query: 361 VRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAV 420
+R RNGIN S V I+AS+ D+Y+A I +++++KIGPKMD+GNLIPS+ VA G DYAV
Sbjct: 360 IRLRNGINEKSTVKIMASEGDLYVAKIDNKIMVKIGPKMDLGNLIPSNLHVATSGQDYAV 419
Query: 421 WE 422
WE
Sbjct: 420 WE 421
|
Source: Vigna mungo Species: Vigna mungo Genus: Vigna Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|228404|prf||1803517A alpha amylase | Back alignment and taxonomy information |
|---|
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/422 (77%), Positives = 369/422 (87%), Gaps = 4/422 (0%)
Query: 1 MSTLKSFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHV 60
S L FC LL +F +SPALLFQGFNWESS K GGWYNSLKNSIPDL+NAGITHV
Sbjct: 4 FSRLSIFCLFISLLPLF---SSPALLFQGFNWESSKK-GGWYNSLKNSIPDLANAGITHV 59
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120
WLPPPSQSV+P+GY+PGRLYDLDAS+YGS+ +LKSLI AF +KGIKCLAD+VINHRTAER
Sbjct: 60 WLPPPSQSVSPEGYLPGRLYDLDASRYGSKNELKSLIAAFHEKGIKCLADIVINHRTAER 119
Query: 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180
KDGRGIYCIFEGGT D RLDWGPSFICR D YSDG GN+D+GE + APDIDHLNP+VQ
Sbjct: 120 KDGRGIYCIFEGGTPDSRLDWGPSFICRDDTAYSDGTGNNDSGEGYDAAPDIDHLNPQVQ 179
Query: 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
+ELS+WMNWLKTEIGFDGWRFDFVKGYAPSI+K+YME T PDFAVGEKWD++SYG DGKP
Sbjct: 180 RELSEWMNWLKTEIGFDGWRFDFVKGYAPSISKIYMEQTRPDFAVGEKWDAISYGQDGKP 239
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
+ NQD HRGAL +WV++AGGA+ AFDFTTKGILQAAVQGELWRL D NGKPPG IG+ P+
Sbjct: 240 NYNQDSHRGALVNWVESAGGAITAFDFTTKGILQAAVQGELWRLIDPNGKPPGMIGVKPE 299
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAA 360
NAVTFIDNHDTGSTQRLWPFPSDKVM GYAYILTHPGTP IFYDHFFDWGLKE I+KL++
Sbjct: 300 NAVTFIDNHDTGSTQRLWPFPSDKVMQGYAYILTHPGTPSIFYDHFFDWGLKEQIAKLSS 359
Query: 361 VRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAV 420
+R RNGIN S V I+AS+ D+Y+A I +++++KIGPKMD+GNLIPS+ VA G DYAV
Sbjct: 360 IRLRNGINEKSSVKIMASEGDLYVAKIDNKIMVKIGPKMDLGNLIPSNLHVATSGQDYAV 419
Query: 421 WE 422
WE
Sbjct: 420 WE 421
|
Source: Vigna radiata Species: Vigna radiata Genus: Vigna Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538308|ref|XP_002510219.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550920|gb|EEF52406.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/417 (77%), Positives = 359/417 (86%), Gaps = 1/417 (0%)
Query: 9 FLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS 68
F FLL+IF TS ALLFQGFNWES NK GGWYN LKNSI D++NAGITHVWLPPPSQS
Sbjct: 11 FWLFLLSIFPLSTSSALLFQGFNWESCNKGGGWYNLLKNSILDIANAGITHVWLPPPSQS 70
Query: 69 VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYC 128
V+PQGYMPGRLYDL+AS+YG+Q +LKSLI+AF KGIKCLAD+VINHRTAE+KD RGI+C
Sbjct: 71 VSPQGYMPGRLYDLNASRYGTQDELKSLIRAFHHKGIKCLADIVINHRTAEKKDERGIWC 130
Query: 129 IFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN 188
IFEGGT DDRLDWGPSFIC D +SDG GN DTGED+ PAPDIDHLNPRVQKELSDWMN
Sbjct: 131 IFEGGTDDDRLDWGPSFICCDDTVFSDGTGNPDTGEDYPPAPDIDHLNPRVQKELSDWMN 190
Query: 189 WLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHR 248
WLK EIGF GWRFDF KGY+P+I K+YME P FAVGEKWDSLSYG D KPD NQD HR
Sbjct: 191 WLKLEIGFGGWRFDFAKGYSPTIMKIYMEQIPPGFAVGEKWDSLSYGQDWKPDYNQDAHR 250
Query: 249 GALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDN 308
ALKDW+QA+GG + AFDFTTKGILQAAVQGELWRL DSNG PPG IGI+PQNAVTFIDN
Sbjct: 251 NALKDWIQASGGVITAFDFTTKGILQAAVQGELWRLIDSNGNPPGLIGIMPQNAVTFIDN 310
Query: 309 HDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGIN 368
HDTGSTQ+LWPFPSDKVM GYAYILTHPG P IFYDHFFDWGLKE ISKLA++R GI+
Sbjct: 311 HDTGSTQQLWPFPSDKVMQGYAYILTHPGIPTIFYDHFFDWGLKEQISKLASIRKNYGID 370
Query: 369 TASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPS-DFKVAADGTDYAVWEKN 424
+ S + ILA+++D+Y+AAI D VIMKIGP+MD+GNL+PS +F+VA G YAVW KN
Sbjct: 371 SRSGMKILAAESDLYMAAINDNVIMKIGPRMDLGNLLPSKEFQVATSGESYAVWVKN 427
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357437821|ref|XP_003589186.1| Alpha-amylase [Medicago truncatula] gi|355478234|gb|AES59437.1| Alpha-amylase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/422 (77%), Positives = 360/422 (85%), Gaps = 1/422 (0%)
Query: 1 MSTLKSFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHV 60
M++L F L+IF S LLFQGFNWESSNK GGWYNSLKN IPDL+NAGITHV
Sbjct: 1 MNSLPWLSLFCFCLSIFPLLASSTLLFQGFNWESSNK-GGWYNSLKNLIPDLANAGITHV 59
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120
WLPPPSQSV PQGY+PGRLYDLDASKYGS+ DLKSLI AF+ KGI CLAD+VINHRTAER
Sbjct: 60 WLPPPSQSVGPQGYLPGRLYDLDASKYGSKDDLKSLIAAFKDKGINCLADIVINHRTAER 119
Query: 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180
KD RGIYC+FEGGT D +LDWGPSFIC+ D YSDG GN D+GE +Q APDIDHLNP+VQ
Sbjct: 120 KDDRGIYCLFEGGTPDSKLDWGPSFICKDDTAYSDGTGNLDSGEGYQAAPDIDHLNPQVQ 179
Query: 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
KELS+WMNWLKTEIGF GWRFDFVKGYAPSITK+YMENTSPDFAVGE W+SLSYG DGK
Sbjct: 180 KELSEWMNWLKTEIGFSGWRFDFVKGYAPSITKIYMENTSPDFAVGEYWNSLSYGQDGKL 239
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
+ NQD RG L +WV+ GG V AFDFTTKGILQAAVQGELWRLKDSNGKPPG IGI P+
Sbjct: 240 NYNQDAARGELVNWVENGGGVVNAFDFTTKGILQAAVQGELWRLKDSNGKPPGLIGIKPE 299
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAA 360
N TFIDNHDTGSTQ+LWPFPSDKVM GYAYILTHPGTP IFYDHFFDWGLK+ I+KL A
Sbjct: 300 NGATFIDNHDTGSTQKLWPFPSDKVMQGYAYILTHPGTPSIFYDHFFDWGLKDQIAKLTA 359
Query: 361 VRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAV 420
+R RNGIN S VNILA+DAD+Y+A I +++I+KIGP+MD+GNLIPS+F VA G DYAV
Sbjct: 360 IRQRNGINMKSTVNILAADADLYVAKIDNKIIVKIGPRMDLGNLIPSNFHVATSGQDYAV 419
Query: 421 WE 422
WE
Sbjct: 420 WE 421
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388508160|gb|AFK42146.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/422 (77%), Positives = 359/422 (85%), Gaps = 1/422 (0%)
Query: 1 MSTLKSFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHV 60
M++L F L+IF S LLFQGFNWESSNK GGWYNSLKN IPDL+NAGITHV
Sbjct: 1 MNSLPWLSLFCFCLSIFPLLASSTLLFQGFNWESSNK-GGWYNSLKNLIPDLANAGITHV 59
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120
WLPPPSQSV PQGY+PGRLYDLDASKYGS+ DLKSLI AF+ KGI CLAD+VINHRTAER
Sbjct: 60 WLPPPSQSVGPQGYLPGRLYDLDASKYGSKDDLKSLIAAFKDKGINCLADIVINHRTAER 119
Query: 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180
KD RGIYC+FEGGT D +LDWGPSFIC+ D YSDG GN D+GE +Q APDIDHLNP+VQ
Sbjct: 120 KDDRGIYCLFEGGTPDSKLDWGPSFICKDDTAYSDGTGNLDSGEGYQAAPDIDHLNPQVQ 179
Query: 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
KELS+WMNWLKTEIGF GWRFDFVKGYAPSITK+YMENTSPDFAVGE W+SLSYG DGK
Sbjct: 180 KELSEWMNWLKTEIGFSGWRFDFVKGYAPSITKIYMENTSPDFAVGEYWNSLSYGQDGKL 239
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
+ NQD RG L +WV+ GG V AFDFTTKGILQAAVQGELWRLKDSNGKPPG IGI P+
Sbjct: 240 NYNQDAARGELVNWVENGGGVVNAFDFTTKGILQAAVQGELWRLKDSNGKPPGLIGIKPE 299
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAA 360
N TFIDNHDTGSTQ+LWPFPSDKVM GYAYILTHPGTP IFYDHFFDWGLK+ I KL A
Sbjct: 300 NGATFIDNHDTGSTQKLWPFPSDKVMQGYAYILTHPGTPSIFYDHFFDWGLKDQIVKLTA 359
Query: 361 VRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAV 420
+R RNGIN S VNILA+DAD+Y+A I +++I+KIGP+MD+GNLIPS+F VA G DYAV
Sbjct: 360 IRQRNGINMKSTVNILAADADLYVAKIDNKIIVKIGPRMDLGNLIPSNFHVATSGQDYAV 419
Query: 421 WE 422
WE
Sbjct: 420 WE 421
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3769330|dbj|BAA33879.1| alpha-amylase [Phaseolus vulgaris] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/422 (75%), Positives = 363/422 (86%), Gaps = 5/422 (1%)
Query: 1 MSTLKSFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHV 60
S L FC L +F +S ALLFQGFNWESS K GGWYNSLKNS+PD++NAGITHV
Sbjct: 4 FSRLSIFCLFISLSPLF---SSSALLFQGFNWESSKK-GGWYNSLKNSVPDIANAGITHV 59
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120
WLPPPSQSV+P+GY+PGRLYDLDAS+YGS+ +LKSLI AF +KGIKCLAD+VINHRTAER
Sbjct: 60 WLPPPSQSVSPEGYLPGRLYDLDASRYGSKDELKSLIAAFHEKGIKCLADIVINHRTAER 119
Query: 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180
KDGRGIYCIFEGGT D RLDWGPSFIC+ D YSDG GN+D+GE + APDIDHLNP+VQ
Sbjct: 120 KDGRGIYCIFEGGTPDARLDWGPSFICKDDTTYSDGTGNNDSGESYDAAPDIDHLNPQVQ 179
Query: 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
+ELS+WMNWLKTE+GFDGWRFDFVKGYAPSI+K+YME T PDFAVGEKWD LSY +GKP
Sbjct: 180 RELSEWMNWLKTEVGFDGWRFDFVKGYAPSISKIYMEQTRPDFAVGEKWDPLSY-ENGKP 238
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
NQD HRGAL +WV++AGGA+ AFDFTTKGILQAAVQGELWRL D NGKP G IG+ P+
Sbjct: 239 TYNQDSHRGALVNWVESAGGAITAFDFTTKGILQAAVQGELWRLIDPNGKPSGMIGVKPE 298
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAA 360
NAVTFIDNHDTGSTQRLWPFPSDKVM GYAYILTHPGTP IFYDHFFDWGLKE I+KL++
Sbjct: 299 NAVTFIDNHDTGSTQRLWPFPSDKVMQGYAYILTHPGTPSIFYDHFFDWGLKEQIAKLSS 358
Query: 361 VRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAV 420
+R RNGIN S V I+A++ D+Y+A I +++++KIGPKMD+G LIPS+F VA G DYAV
Sbjct: 359 IRVRNGINEKSTVEIMAAEGDLYVAKIDNKIMVKIGPKMDLGKLIPSNFHVATSGQDYAV 418
Query: 421 WE 422
WE
Sbjct: 419 WE 420
|
Source: Phaseolus vulgaris Species: Phaseolus vulgaris Genus: Phaseolus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 424 | ||||||
| TAIR|locus:2117398 | 423 | AMY1 "alpha-amylase-like" [Ara | 0.988 | 0.990 | 0.699 | 9.7e-167 | |
| UNIPROTKB|P27933 | 436 | AMY1.3 "Alpha-amylase isozyme | 0.997 | 0.970 | 0.642 | 2.2e-160 | |
| UNIPROTKB|P27939 | 437 | AMY1.7 "Alpha-amylase isozyme | 0.995 | 0.965 | 0.662 | 5.9e-160 | |
| UNIPROTKB|P27932 | 440 | AMY1.2 "Alpha-amylase isozyme | 1.0 | 0.963 | 0.628 | 1.4e-158 | |
| UNIPROTKB|P27937 | 438 | AMY1.6 "Alpha-amylase isozyme | 0.997 | 0.965 | 0.643 | 9.9e-158 | |
| UNIPROTKB|P27934 | 437 | AMY1.4 "Alpha-amylase isozyme | 0.981 | 0.951 | 0.625 | 9.2e-155 | |
| UNIPROTKB|P17654 | 434 | AMY1.1 "Alpha-amylase" [Oryza | 0.983 | 0.960 | 0.627 | 2.6e-150 | |
| TAIR|locus:2196759 | 887 | AMY3 "alpha-amylase-like 3" [A | 0.905 | 0.432 | 0.486 | 3.4e-100 | |
| TAIR|locus:2199808 | 413 | AMY2 "alpha-amylase-like 2" [A | 0.898 | 0.922 | 0.456 | 6.6e-97 | |
| UNIPROTKB|Q2KES2 | 626 | MGCH7_ch7g964 "Putative unchar | 0.228 | 0.154 | 0.366 | 3.9e-17 |
| TAIR|locus:2117398 AMY1 "alpha-amylase-like" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1622 (576.0 bits), Expect = 9.7e-167, P = 9.7e-167
Identities = 298/426 (69%), Positives = 350/426 (82%)
Query: 1 MSTLKSFCFLSFLLAIFLP-FT-SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGIT 58
M++L + F S L I P FT S LLFQ FNWES K GG+YNSL NSI D++NAGIT
Sbjct: 1 MTSLHTLLFSSLLFFIVFPTFTFSSTLLFQSFNWESWKKEGGFYNSLHNSIDDIANAGIT 60
Query: 59 HVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118
H+WLPPPSQSVAP+GY+PG+LYDL++SKYGS+A+LKSLI+A QKGIK LAD+VINHRTA
Sbjct: 61 HLWLPPPSQSVAPEGYLPGKLYDLNSSKYGSEAELKSLIKALNQKGIKALADIVINHRTA 120
Query: 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPR 178
ERKD + YC FEGGTSDDRLDW PSF+CR D ++ G GN DTG DF APDIDHLNPR
Sbjct: 121 ERKDDKCGYCYFEGGTSDDRLDWDPSFVCRNDPKFP-GTGNLDTGGDFDGAPDIDHLNPR 179
Query: 179 VQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDG 238
VQKELS+WMNWLKTEIGF GWRFD+V+GYA SITK+Y++NTSPDFAVGEKWD + YG DG
Sbjct: 180 VQKELSEWMNWLKTEIGFHGWRFDYVRGYASSITKLYVQNTSPDFAVGEKWDDMKYGGDG 239
Query: 239 KPDANQDGHRGALKDWVQAAGGAV-AAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGI 297
K D +Q+ HR LK W++ AGG V AFDFTTKGILQ+AV+GELWRLKDS GKPPG IGI
Sbjct: 240 KLDYDQNEHRSGLKQWIEEAGGGVLTAFDFTTKGILQSAVKGELWRLKDSQGKPPGMIGI 299
Query: 298 LPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISK 357
+P NAVTFIDNHDT T W FPSDKV+LGY YILTHPGTPCIFY+H+ +WGLKE+ISK
Sbjct: 300 MPGNAVTFIDNHDTFRT---WVFPSDKVLLGYVYILTHPGTPCIFYNHYIEWGLKESISK 356
Query: 358 LAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTD 417
L A+RN+NGI + S V I A++AD+Y+A I D+VIMKIGPK D+G L+PS+F +A G D
Sbjct: 357 LVAIRNKNGIGSTSSVTIKAAEADLYLAMIDDKVIMKIGPKQDVGTLVPSNFALAYSGLD 416
Query: 418 YAVWEK 423
+AVWEK
Sbjct: 417 FAVWEK 422
|
|
| UNIPROTKB|P27933 AMY1.3 "Alpha-amylase isozyme 3D" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1562 (554.9 bits), Expect = 2.2e-160, P = 2.2e-160
Identities = 273/425 (64%), Positives = 326/425 (76%)
Query: 1 MSTLKSFCFLSFLLAIFLPFTS--PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGIT 58
M S C L ++ L S +LFQGFNWES + GGWYN LK + D++ AG+T
Sbjct: 1 MKNTSSLCLLLLVVLCSLTCNSGQAQVLFQGFNWESWKQQGGWYNMLKGQVDDIAKAGVT 60
Query: 59 HVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118
HVWLPPPS SVAPQGYMPGRLYDLDASKYG+ A+LKSLI AF KG++C+AD+VINHR A
Sbjct: 61 HVWLPPPSHSVAPQGYMPGRLYDLDASKYGTAAELKSLIAAFHGKGVQCVADVVINHRCA 120
Query: 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPR 178
E+KD RG+YC+FEGGT DDRLDWGP IC D +YSDG G+ DTGE F APDIDHLNPR
Sbjct: 121 EKKDARGVYCVFEGGTPDDRLDWGPGMICSDDTQYSDGTGHRDTGEGFGAAPDIDHLNPR 180
Query: 179 VQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDG 238
VQ+EL+DW+NWLK+++GFDGWR DF KGY+ I K+Y+E+ P F V E W+SLSY DG
Sbjct: 181 VQRELTDWLNWLKSDVGFDGWRLDFAKGYSTDIAKMYVESCKPGFVVAEIWNSLSYNGDG 240
Query: 239 KPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGIL 298
KP ANQD R L +WV A GG FDFTTKG+LQA VQGELWRL+D NGK G IG L
Sbjct: 241 KPAANQDQGRQELVNWVNAVGGPAMTFDFTTKGLLQAGVQGELWRLRDGNGKAAGMIGWL 300
Query: 299 PQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKL 358
P+ AVTF+DNHDTGSTQ+LWPFPSDKVM GYAYILTHPG PCIFYDH FDW LK+ I+ L
Sbjct: 301 PEKAVTFVDNHDTGSTQKLWPFPSDKVMQGYAYILTHPGVPCIFYDHMFDWNLKQEITAL 360
Query: 359 AAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDY 418
AA+R RNGIN S++ I+ +DAD Y+A + ++V++KIG + D+GN +PSDF G DY
Sbjct: 361 AAIRERNGINAGSKLRIVVADADAYVAVVDEKVMVKIGTRYDVGNAVPSDFHQTVHGKDY 420
Query: 419 AVWEK 423
+VWEK
Sbjct: 421 SVWEK 425
|
|
| UNIPROTKB|P27939 AMY1.7 "Alpha-amylase isozyme 3C" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1558 (553.5 bits), Expect = 5.9e-160, P = 5.9e-160
Identities = 281/424 (66%), Positives = 327/424 (77%)
Query: 2 STLKSFCFLSF-LLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHV 60
ST S C L F LL + +LFQGFNWES K GGWYN L + + D++ G+THV
Sbjct: 5 STTMS-CLLFFVLLCLGSHLAQAQVLFQGFNWESWKKQGGWYNFLHSHVDDIAATGVTHV 63
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120
WLPPPS SVAPQGYMPGRLYDLDASKYG+ A+L+SLI AF K IKC+AD+VINHR A+
Sbjct: 64 WLPPPSHSVAPQGYMPGRLYDLDASKYGTGAELRSLIAAFHSKSIKCVADIVINHRCADY 123
Query: 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180
KD RGIYCIFEGGT D RLDWGP IC D +YS+G+G+ DTG DF APDIDHLN RVQ
Sbjct: 124 KDSRGIYCIFEGGTPDSRLDWGPDMICSDDTQYSNGRGHRDTGADFGAAPDIDHLNTRVQ 183
Query: 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
ELSDW+NWLK+++GFDGWR DF KGY+ ++ K Y++NT P F V E W ++ Y +G+P
Sbjct: 184 TELSDWLNWLKSDVGFDGWRLDFAKGYSATVAKTYVDNTDPSFVVAEIWSNMRYDGNGEP 243
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
NQDG R L +W QA GG +AFDFTTKG LQAAVQGELWR+KD NGK PG IG LP+
Sbjct: 244 SWNQDGDRQELVNWAQAVGGPASAFDFTTKGELQAAVQGELWRMKDGNGKAPGMIGWLPE 303
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAA 360
AVTFIDNHDTGSTQ WPFPSDKVM GYAYILTHPG PCIFYDH FDW LK+ IS LAA
Sbjct: 304 KAVTFIDNHDTGSTQNSWPFPSDKVMQGYAYILTHPGVPCIFYDHVFDWNLKQEISTLAA 363
Query: 361 VRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAV 420
VR+RNGI+ S++NILA+D DVY+A I D+VI KIG + D+GNLIPSDF V A G +Y V
Sbjct: 364 VRSRNGIHPGSKLNILAADGDVYVAMIDDKVITKIGTRYDVGNLIPSDFHVVAHGNNYCV 423
Query: 421 WEKN 424
WEK+
Sbjct: 424 WEKS 427
|
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| UNIPROTKB|P27932 AMY1.2 "Alpha-amylase isozyme 3A" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1545 (548.9 bits), Expect = 1.4e-158, P = 1.4e-158
Identities = 267/425 (62%), Positives = 333/425 (78%)
Query: 1 MSTLKSFCFLSFL-LAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITH 59
M+ L F ++ L L + +LFQGFNW+S K GGWYN LK+ + D+++AG+TH
Sbjct: 5 MAALCGFLLVALLWLTPDVAHAQTQILFQGFNWDSWKKQGGWYNMLKDQVGDIASAGVTH 64
Query: 60 VWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119
VWLPPP+ SV+PQGYMPGRLYDL+ASKYG++A+LKSLI AF KGIKC+AD+V+NHR A+
Sbjct: 65 VWLPPPTHSVSPQGYMPGRLYDLNASKYGTKAELKSLIAAFHAKGIKCVADIVVNHRCAD 124
Query: 120 RKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRV 179
KDGRG+YCIF+GG LDWGPS IC D +YSDG G+ DTG DF APDIDHLNP V
Sbjct: 125 DKDGRGVYCIFKGGGPRGCLDWGPSMICCDDTQYSDGTGHRDTGADFAAAPDIDHLNPLV 184
Query: 180 QKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGK 239
Q+ELSDW+ WL+ ++GFDGWR DF KGY+ ++ + Y++N P F V E W+SLSY DGK
Sbjct: 185 QRELSDWLRWLRRDVGFDGWRLDFAKGYSAAVARTYVQNARPSFVVAEIWNSLSYDGDGK 244
Query: 240 PDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILP 299
P ANQDG R L +WV+ GG AFDFTTKGILQ+AVQGELWR++D +GK PG IG P
Sbjct: 245 PAANQDGQRQELVNWVKQVGGPATAFDFTTKGILQSAVQGELWRMRDKDGKAPGMIGWYP 304
Query: 300 QNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLA 359
+ AVTF+DNHDTGSTQR+WPFPSDKV+LGYAYILTHPG PCIFYDH FDW LK+ I+ LA
Sbjct: 305 EKAVTFVDNHDTGSTQRMWPFPSDKVILGYAYILTHPGVPCIFYDHVFDWNLKQEINALA 364
Query: 360 AVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYA 419
A R RNGIN S++ +LA+++D+Y+A + +RVI KIGP++D+GN+IPSDF + A G DY
Sbjct: 365 ATRKRNGINAGSKLRVLAAESDMYVAMVDERVITKIGPRIDVGNIIPSDFHIVAHGNDYC 424
Query: 420 VWEKN 424
VWEK+
Sbjct: 425 VWEKS 429
|
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| UNIPROTKB|P27937 AMY1.6 "Alpha-amylase isozyme 3B" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1537 (546.1 bits), Expect = 9.9e-158, P = 9.9e-158
Identities = 273/424 (64%), Positives = 326/424 (76%)
Query: 1 MSTLKSFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHV 60
++++ S ++ LL + +LFQGFNWES K GGWYN L + D++ G+THV
Sbjct: 5 IASMSSLLLIA-LLCLSSHLAQAQVLFQGFNWESWKKQGGWYNFLHGHVDDIAATGVTHV 63
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120
WLPPPS SVAPQGYMPGRLYDLDASKYG+ A+L+SLI AF KGIKC+AD+VINHR A+
Sbjct: 64 WLPPPSHSVAPQGYMPGRLYDLDASKYGTGAELRSLIAAFHSKGIKCVADIVINHRCADY 123
Query: 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180
KD RGIYCIFEGGT D RLDWGP IC D +YS+G+G+ DTG DF APDIDHLN RVQ
Sbjct: 124 KDSRGIYCIFEGGTPDSRLDWGPDMICSDDTQYSNGRGHRDTGADFGAAPDIDHLNTRVQ 183
Query: 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
ELSDW+NWLK+++GFDGWR DF KGY+ ++ K Y++NT P F V E W ++ Y +G+P
Sbjct: 184 TELSDWLNWLKSDVGFDGWRLDFAKGYSAAVAKTYVDNTDPSFVVAEIWSNMRYDGNGEP 243
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
NQDG R L +W QA GG +AFDFTTKG LQAAVQGELWR+KD NGK PG IG LP+
Sbjct: 244 SWNQDGDRQELVNWAQAVGGPASAFDFTTKGELQAAVQGELWRMKDGNGKAPGMIGWLPE 303
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAA 360
AVTFIDNHDTGSTQ WPFPSDKVM GYAYILTHPG PCIFYDH FDW LK+ IS LAA
Sbjct: 304 KAVTFIDNHDTGSTQNSWPFPSDKVMQGYAYILTHPGVPCIFYDHVFDWNLKQEISTLAA 363
Query: 361 VRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAV 420
VR+RN I+ S++ ILA++ DVY+A I D+VI KIG + D+GNLIPSDF V A G +Y +
Sbjct: 364 VRSRNEIHPGSKLKILAAEGDVYVAMIDDKVITKIGTRYDVGNLIPSDFHVVAHGNNYCI 423
Query: 421 WEKN 424
WEK+
Sbjct: 424 WEKS 427
|
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| UNIPROTKB|P27934 AMY1.4 "Alpha-amylase isozyme 3E" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1509 (536.3 bits), Expect = 9.2e-155, P = 9.2e-155
Identities = 260/416 (62%), Positives = 317/416 (76%)
Query: 8 CFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ 67
C + +L + +LFQGFNWES K GGWYN L + ++++ G THVWLPPPS
Sbjct: 10 CVVFAVLCLASSLAQAQVLFQGFNWESWRKQGGWYNFLHEKVEEIASTGATHVWLPPPSH 69
Query: 68 SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIY 127
SV+PQGYMPGRLYDLDASKYG++A+LKSLI+AF K ++CLAD+VINHR A+ KD RG+Y
Sbjct: 70 SVSPQGYMPGRLYDLDASKYGTEAELKSLIEAFHDKNVECLADIVINHRCADYKDSRGVY 129
Query: 128 CIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWM 187
C+FEGGT D RLDWGP IC D +YS+G+G+ DTG F APDIDHLNPRVQ+EL+DW+
Sbjct: 130 CVFEGGTPDGRLDWGPDMICSDDTQYSNGRGHRDTGAGFGAAPDIDHLNPRVQRELTDWL 189
Query: 188 NWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGH 247
NWL+T++GFDGWR DF KGY+ + ++Y++NT+P F VGE W SL Y DGKP NQD
Sbjct: 190 NWLRTDLGFDGWRLDFAKGYSAPLARIYVDNTNPTFVVGEIWSSLIYNGDGKPSTNQDAD 249
Query: 248 RGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFID 307
R L +WV+ G AFDFTTKGILQAAVQGELWRL D NGK PG +G +P AVTF+D
Sbjct: 250 RQELVNWVEGVGKPATAFDFTTKGILQAAVQGELWRLHDGNGKAPGLMGWMPDQAVTFVD 309
Query: 308 NHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGI 367
NHDTGSTQ LWPFPSDKVM GYAYILTHPG PCIFYDH FDW L+ I+ LA +R+RNGI
Sbjct: 310 NHDTGSTQSLWPFPSDKVMQGYAYILTHPGIPCIFYDHVFDWNLQHEIATLAEIRSRNGI 369
Query: 368 NTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 423
+ S ++IL ++ D+Y+A I +VI K+GP+ D G +IPSDF V A G DY VWEK
Sbjct: 370 HAESTLDILKAEGDIYVAMIDGKVITKLGPRYDAGGIIPSDFHVVAHGNDYCVWEK 425
|
|
| UNIPROTKB|P17654 AMY1.1 "Alpha-amylase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1467 (521.5 bits), Expect = 2.6e-150, P = 2.6e-150
Identities = 264/421 (62%), Positives = 314/421 (74%)
Query: 6 SFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPP 65
S L LL + T+ +LFQGFNWES + GGWYN L + D++ AGITHVWLPPP
Sbjct: 14 SLSVLIVLLGLSSNLTAGQVLFQGFNWESWKENGGWYNFLMGKVDDIAAAGITHVWLPPP 73
Query: 66 SQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG 125
S SV QGYMPGRLYDLDASKYG++A LKSLI+AF KG++ +AD+VINHRTAE KDGRG
Sbjct: 74 SHSVGEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKDGRG 133
Query: 126 IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSD 185
IYC+FEGGT D RLDWGP ICR D Y DG GN DTG DF APDIDHLN RVQ+EL
Sbjct: 134 IYCLFEGGTPDSRLDWGPHMICRDDP-YGDGTGNPDTGADFAAAPDIDHLNKRVQRELIG 192
Query: 186 WMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQD 245
W++WLK +IGFD WR DF KGY+ + K+Y++ T P FAV E W S++ G DGKP+ +Q+
Sbjct: 193 WLDWLKMDIGFDAWRLDFAKGYSADMAKIYIDATEPSFAVAEIWTSMANGGDGKPNYDQN 252
Query: 246 GHRGALKDWVQAAGGA---VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA 302
HR L +WV GGA AFDFTTKGIL AV+GELWRL+ +GK PG IG P A
Sbjct: 253 AHRQELVNWVDRVGGANSNATAFDFTTKGILNVAVEGELWRLRGEDGKAPGMIGWWPAKA 312
Query: 303 VTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVR 362
TF+DNHDTGSTQ LWPFPSDKVM GYAYILTHPG PCIFYDHFFDWGLKE I +L ++R
Sbjct: 313 TTFVDNHDTGSTQHLWPFPSDKVMQGYAYILTHPGNPCIFYDHFFDWGLKEEIERLVSIR 372
Query: 363 NRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWE 422
NR GI+ AS + I+ +D+D+Y+A I +VI KIGP+ D+ +LIP F+V A G YA+WE
Sbjct: 373 NRQGIHPASELRIMEADSDLYLAEIDGKVITKIGPRYDVEHLIPEGFQVVAHGDGYAIWE 432
Query: 423 K 423
K
Sbjct: 433 K 433
|
|
| TAIR|locus:2196759 AMY3 "alpha-amylase-like 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
Identities = 196/403 (48%), Positives = 260/403 (64%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+L QGFNWES NK+G WY L+ +L++ G T +WLPPP++SV+P+GYMP LY+L+
Sbjct: 497 ILCQGFNWES-NKSGRWYLELQEKADELASLGFTVLWLPPPTESVSPEGYMPKDLYNLN- 554
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
S+YG+ +LK ++ F + GIK L D V+NHR A K+ G++ +F GG RL+W
Sbjct: 555 SRYGTIDELKDTVKKFHKVGIKVLGDAVLNHRCAHFKNQNGVWNLF-GG----RLNWDDR 609
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
+ D + G+GN +G++F AP+IDH V+K++ +W+ W+ E+G+DGWR DFV
Sbjct: 610 AVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWMMEEVGYDGWRLDFV 668
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAA 264
+G+ K YM+ + P FAVGE WDSLSY G+ D NQD HR + DW+ A GA A
Sbjct: 669 RGFWGGYVKDYMDASKPYFAVGEYWDSLSY-TYGEMDYNQDAHRQRIVDWINATSGAAGA 727
Query: 265 FDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD 323
FD TTKGIL A+Q E WRL D GKPPG +G P AVTFI+NHDTGSTQ W FP
Sbjct: 728 FDVTTKGILHTALQKCEYWRLSDPKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEG 787
Query: 324 KVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVY 383
K M GYAYILTHPGTP +F+DH F I+ L ++RNR ++ S VNI S+ DVY
Sbjct: 788 KEMQGYAYILTHPGTPAVFFDHIFS-DYHSEIAALLSLRNRQKLHCRSEVNIDKSERDVY 846
Query: 384 IAAIGDRVIMKIGPKMDIGNLIP----SDFKVAADGTDYAVWE 422
A I ++V MKIGP G+ P ++ VA +G DY VWE
Sbjct: 847 AAIIDEKVAMKIGP----GHYEPPNGSQNWSVAVEGRDYKVWE 885
|
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| TAIR|locus:2199808 AMY2 "alpha-amylase-like 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
Identities = 185/405 (45%), Positives = 257/405 (63%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
++ Q +NWES W+ +L +PD++ +G T WLPPPSQS+AP+GY+P LY L+
Sbjct: 27 VILQAYNWESHKY--DWWRNLDGKVPDIAKSGFTSAWLPPPSQSLAPEGYLPQDLYSLN- 83
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
S YGS+ LKSL++ +Q ++ +AD+VINHR + G+Y ++G + L W
Sbjct: 84 SAYGSEHLLKSLLRKMKQYKVRAMADIVINHRVGTTRGHGGMYNRYDGIS----LPWDEH 139
Query: 145 FI--CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD 202
+ C G G GN TG++F P++DH V+K++ W+ WL+ +GF +RFD
Sbjct: 140 AVTSCTG------GLGNRSTGDNFNGVPNVDHTQHFVRKDIIGWLRWLRNTVGFQDFRFD 193
Query: 203 FVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAV 262
F +GY+ + K Y+ P F+VGE WDS +Y G D NQD HR + W+ A G
Sbjct: 194 FARGYSANYVKEYIGAAKPLFSVGECWDSCNYNGHGL-DYNQDSHRQRIISWIDATGQIS 252
Query: 263 AAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS 322
AAFDFTTKGILQ AV+G+ WRL D+ GKPPG +G P AVTF+DNHDTGSTQ WPFPS
Sbjct: 253 AAFDFTTKGILQEAVKGQYWRLCDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPS 312
Query: 323 DKVMLGYAYILTHPGTPCIFYDHFFDWG--LKEAISKLAAVRNRNGINTASRVNILASDA 380
VM GYAYILTHPG PC+FYDHF+DWG + + I KL +R R I++ S V +L +++
Sbjct: 313 HHVMEGYAYILTHPGIPCVFYDHFYDWGSSIHDQIVKLIDIRRRQDIHSRSTVRVLKAES 372
Query: 381 DVYIAAIGDRVIMKIGPKMDIGNLIPS--DFKVAADGTDYAVWEK 423
++Y A +G+++ MK+G G+ PS D+ +A G YAVW K
Sbjct: 373 NLYAAIVGEKICMKLGD----GSWCPSGRDWTLATSGHRYAVWHK 413
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| UNIPROTKB|Q2KES2 MGCH7_ch7g964 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 148 (57.2 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 40/109 (36%), Positives = 52/109 (47%)
Query: 19 PFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---PQGYM 75
P T LFQGF W W L N IP L+ GIT +W+PP + GY
Sbjct: 30 PSTRNETLFQGFEWHLPADKRHW-RRLINLIPSLAPLGITKLWIPPACKGGGGAWSNGYD 88
Query: 76 PGRLYDLD--------ASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116
LYDL A+K+G + DL L++A GI+ L D V+NH+
Sbjct: 89 VYDLYDLGQFDQKGSRATKWGPRTDLDELVRAAGDAGIEILFDAVLNHK 137
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A2YGY2 | AMY2A_ORYSI | 3, ., 2, ., 1, ., 1 | 0.6444 | 0.9433 | 0.8968 | N/A | no |
| P27933 | AMY3D_ORYSJ | 3, ., 2, ., 1, ., 1 | 0.6691 | 0.9410 | 0.9151 | yes | no |
| P04750 | AMY6_HORVU | 3, ., 2, ., 1, ., 1 | 0.6350 | 0.9858 | 0.9743 | N/A | no |
| P00693 | AMY1_HORVU | 3, ., 2, ., 1, ., 1 | 0.6228 | 0.9433 | 0.9132 | N/A | no |
| P08117 | AMY3_WHEAT | 3, ., 2, ., 1, ., 1 | 0.5938 | 0.9504 | 0.9757 | N/A | no |
| P04063 | AMY2_HORVU | 3, ., 2, ., 1, ., 1 | 0.6699 | 0.9528 | 0.9461 | N/A | no |
| Q8VZ56 | AMY1_ARATH | 3, ., 2, ., 1, ., 1 | 0.6995 | 0.9882 | 0.9905 | yes | no |
| P04747 | AMY3_HORVU | 3, ., 2, ., 1, ., 1 | 0.6820 | 0.8113 | 0.9347 | N/A | no |
| P17859 | AMYA_VIGMU | 3, ., 2, ., 1, ., 1 | 0.7748 | 0.9858 | 0.9928 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.2.1.1 | 0.979 |
| 3rd Layer | 3.2.1 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | grail3.0033012902 | hypothetical protein (404 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | fgenesh4_pg.C_LG_V001651 | SubName- Full=Starch branching enzyme I; (701 aa) | • | 0.899 | |||||||
 | eugene3.00280310 | SubName- Full=Starch branching enzyme II; (730 aa) | • | • | 0.899 | ||||||
 | estExt_fgenesh4_pg.C_LG_IX1158 | hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (853 aa) | • | 0.899 | |||||||
 | estExt_Genewise1_v1.C_LG_IV2986 | hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (819 aa) | • | 0.899 | |||||||
 | estExt_Genewise1_v1.C_LG_IV0101 | hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (950 aa) | • | 0.899 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 424 | |||
| PLN00196 | 428 | PLN00196, PLN00196, alpha-amylase; Provisional | 0.0 | |
| cd11314 | 302 | cd11314, AmyAc_arch_bac_plant_AmyA, Alpha amylase | 1e-166 | |
| PLN02361 | 401 | PLN02361, PLN02361, alpha-amylase | 1e-150 | |
| PLN02784 | 894 | PLN02784, PLN02784, alpha-amylase | 1e-146 | |
| PRK09441 | 479 | PRK09441, PRK09441, cytoplasmic alpha-amylase; Rev | 4e-53 | |
| cd11318 | 391 | cd11318, AmyAc_bac_fung_AmyA, Alpha amylase cataly | 2e-41 | |
| smart00810 | 61 | smart00810, Alpha-amyl_C2, Alpha-amylase C-termina | 4e-28 | |
| pfam07821 | 63 | pfam07821, Alpha-amyl_C2, Alpha-amylase C-terminal | 1e-24 | |
| pfam00128 | 314 | pfam00128, Alpha-amylase, Alpha amylase, catalytic | 3e-22 | |
| smart00642 | 166 | smart00642, Aamy, Alpha-amylase domain | 4e-21 | |
| COG0366 | 505 | COG0366, AmyA, Glycosidases [Carbohydrate transpor | 1e-18 | |
| cd11320 | 389 | cd11320, AmyAc_AmyMalt_CGTase_like, Alpha amylase | 4e-15 | |
| cd11340 | 407 | cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catal | 4e-14 | |
| cd11315 | 352 | cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic | 4e-14 | |
| cd11339 | 344 | cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catal | 7e-13 | |
| cd00551 | 260 | cd00551, AmyAc_family, Alpha amylase catalytic dom | 1e-12 | |
| cd11338 | 389 | cd11338, AmyAc_CMD, Alpha amylase catalytic domain | 3e-11 | |
| cd11316 | 403 | cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic | 7e-11 | |
| cd11317 | 329 | cd11317, AmyAc_bac_euk_AmyA, Alpha amylase catalyt | 1e-10 | |
| cd00551 | 260 | cd00551, AmyAc_family, Alpha amylase catalytic dom | 2e-10 | |
| cd11354 | 357 | cd11354, AmyAc_bac_CMD_like, Alpha amylase catalyt | 3e-10 | |
| cd11319 | 375 | cd11319, AmyAc_euk_AmyA, Alpha amylase catalytic d | 1e-09 | |
| cd11350 | 390 | cd11350, AmyAc_4, Alpha amylase catalytic domain f | 2e-08 | |
| cd11334 | 447 | cd11334, AmyAc_TreS, Alpha amylase catalytic domai | 6e-07 | |
| cd11328 | 470 | cd11328, AmyAc_maltase, Alpha amylase catalytic do | 1e-06 | |
| cd11313 | 336 | cd11313, AmyAc_arch_bac_AmyA, Alpha amylase cataly | 1e-05 | |
| cd11359 | 456 | cd11359, AmyAc_SLC3A1, Alpha amylase catalytic dom | 2e-05 | |
| TIGR02456 | 539 | TIGR02456, treS_nterm, trehalose synthase | 3e-05 | |
| TIGR02403 | 543 | TIGR02403, trehalose_treC, alpha,alpha-phosphotreh | 3e-05 | |
| cd11337 | 328 | cd11337, AmyAc_CMD_like, Alpha amylase catalytic d | 4e-05 | |
| COG1523 | 697 | COG1523, PulA, Type II secretory pathway, pullulan | 2e-04 | |
| cd11329 | 477 | cd11329, AmyAc_maltase-like, Alpha amylase catalyt | 7e-04 | |
| PRK10933 | 551 | PRK10933, PRK10933, trehalose-6-phosphate hydrolas | 8e-04 | |
| cd11352 | 443 | cd11352, AmyAc_5, Alpha amylase catalytic domain f | 0.001 | |
| PRK14510 | 1221 | PRK14510, PRK14510, putative bifunctional 4-alpha- | 0.001 | |
| cd11326 | 433 | cd11326, AmyAc_Glg_debranch, Alpha amylase catalyt | 0.001 | |
| cd11333 | 428 | cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase ca | 0.002 | |
| cd11348 | 429 | cd11348, AmyAc_2, Alpha amylase catalytic domain f | 0.003 |
| >gnl|CDD|165762 PLN00196, PLN00196, alpha-amylase; Provisional | Back alignment and domain information |
|---|
Score = 632 bits (1632), Expect = 0.0
Identities = 265/425 (62%), Positives = 319/425 (75%), Gaps = 5/425 (1%)
Query: 5 KSFCFLSFLLAIFLPFTSPA--LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWL 62
+ + L+ + L A +LFQGFNWES + GGWYN L + D++ AGITHVWL
Sbjct: 4 RRLSMILLLVLLGLSSNLAAGQVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWL 63
Query: 63 PPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD 122
PPPS SV+ QGYMPGRLYDLDASKYG++A LKSLI+AF KG++ +AD+VINHRTAE KD
Sbjct: 64 PPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKD 123
Query: 123 GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKE 182
GRGIYC+FEGGT D RLDWGP ICR D +YSDG GN DTG DF APDIDHLN RVQ+E
Sbjct: 124 GRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRE 183
Query: 183 LSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDA 242
L W+ WLK++IGFD WR DF KGY+ + KVY++ T P FAV E W S++YG DGKP+
Sbjct: 184 LIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEY 243
Query: 243 NQDGHRGALKDWVQAAGGAVA---AFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILP 299
+Q+ HR L +WV GGA + FDFTTKGIL AV+GELWRL+ ++GK PG IG P
Sbjct: 244 DQNAHRQELVNWVDRVGGAASPATVFDFTTKGILNVAVEGELWRLRGADGKAPGVIGWWP 303
Query: 300 QNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLA 359
AVTF+DNHDTGSTQ +WPFPSDKVM GYAYILTHPG PCIFYDHFFDWGLKE I+ L
Sbjct: 304 AKAVTFVDNHDTGSTQHMWPFPSDKVMQGYAYILTHPGNPCIFYDHFFDWGLKEEIAALV 363
Query: 360 AVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYA 419
++RNRNGI S + I+ +DAD+Y+A I +VI+KIG + D+ +LIP F+V A G YA
Sbjct: 364 SIRNRNGITPTSELRIMEADADLYLAEIDGKVIVKIGSRYDVSHLIPEGFQVVAHGNGYA 423
Query: 420 VWEKN 424
VWEK
Sbjct: 424 VWEKI 428
|
Length = 428 |
| >gnl|CDD|200453 cd11314, AmyAc_arch_bac_plant_AmyA, Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 467 bits (1204), Expect = e-166
Identities = 191/351 (54%), Positives = 226/351 (64%), Gaps = 53/351 (15%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLD 83
+ QGF W+S G W+N L++ P+L+ AG T +WLPPPS+SV + GY PG LYDL+
Sbjct: 2 MLQGFYWDSPKD-GTWWNHLESKAPELAAAGFTAIWLPPPSKSVSGSSMGYDPGDLYDLN 60
Query: 84 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGP 143
S+YGS+A+L+SLI A KGIK +AD+VINHR+
Sbjct: 61 -SRYGSEAELRSLIAALHAKGIKVIADIVINHRSGP------------------------ 95
Query: 144 SFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203
DTGEDF APD+DH NP VQ +L W+NWLK +IGFDGWRFDF
Sbjct: 96 -----------------DTGEDFGGAPDLDHTNPEVQNDLKAWLNWLKNDIGFDGWRFDF 138
Query: 204 VKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVA 263
VKGYAPS K Y E TSP F+VGE WD LSY NQD HR L DW+ A GG A
Sbjct: 139 VKGYAPSYVKEYNEATSPSFSVGEYWDGLSYE-------NQDAHRQRLVDWIDATGGGSA 191
Query: 264 AFDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS 322
AFDFTTK ILQ AV E WRL+D GKPPG IG PQ AVTF+DNHDTGSTQ WPFP+
Sbjct: 192 AFDFTTKYILQEAVNNNEYWRLRDGQGKPPGLIGWWPQKAVTFVDNHDTGSTQGHWPFPT 251
Query: 323 DKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRV 373
D V+ GYAYILTHPGTPC+F+DH++DWGLK+ I L A R R GI + S+V
Sbjct: 252 DNVLQGYAYILTHPGTPCVFWDHYYDWGLKDEIKALIAARKRAGIGSTSKV 302
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes AmyA from bacteria, archaea, water fleas, and plants. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 302 |
| >gnl|CDD|177990 PLN02361, PLN02361, alpha-amylase | Back alignment and domain information |
|---|
Score = 431 bits (1111), Expect = e-150
Identities = 193/406 (47%), Positives = 261/406 (64%), Gaps = 24/406 (5%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+L Q FNWES W+ +L+ +PDL+ +G T WLPPPSQS+AP+GY+P LY L+
Sbjct: 13 ILLQAFNWESHKH--DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLN- 69
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
S YGS+ LKSL++ +Q ++ +AD+VINHR + G+Y ++G L W
Sbjct: 70 SAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYDGIP----LPWDEH 125
Query: 145 FI--CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD 202
+ C G G GN TG++F P+IDH V+K++ W+ WL+ ++GF +RFD
Sbjct: 126 AVTSCTG------GLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFD 179
Query: 203 FVKGYAPSITKVYMENTSPDFAVGEKWDSLSY-GPDGKPDANQDGHRGALKDWVQAAGGA 261
F KGY+ K Y+E P F+VGE WDS +Y GPD + D NQD HR + +W+ GG
Sbjct: 180 FAKGYSAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGGL 239
Query: 262 VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP 321
AAFDFTTKGILQ AV+G+ WRL+D+ GKPPG +G P AVTFIDNHDTGSTQ WPFP
Sbjct: 240 SAAFDFTTKGILQEAVKGQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFP 299
Query: 322 SDKVMLGYAYILTHPGTPCIFYDHFFDWG--LKEAISKLAAVRNRNGINTASRVNILASD 379
SD +M GYAYILTHPG P +FYDHF+DWG + + I KL +R R I++ S + IL +
Sbjct: 300 SDHIMEGYAYILTHPGIPTVFYDHFYDWGGSIHDQIVKLIDIRKRQDIHSRSSIRILEAQ 359
Query: 380 ADVYIAAIGDRVIMKIGPKMDIGNLIPS--DFKVAADGTDYAVWEK 423
+++Y A I +++ MKIG G+ PS ++ +A G YAVW K
Sbjct: 360 SNLYSAIIDEKLCMKIGD----GSWCPSGREWTLATSGHRYAVWHK 401
|
Length = 401 |
| >gnl|CDD|215419 PLN02784, PLN02784, alpha-amylase | Back alignment and domain information |
|---|
Score = 438 bits (1127), Expect = e-146
Identities = 196/400 (49%), Positives = 258/400 (64%), Gaps = 11/400 (2%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+L QGFNWES +K+G WY L +LS+ G T VWLPPP++SV+P+GYMP LY+L+
Sbjct: 504 ILCQGFNWES-HKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLN- 561
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
S+YG+ +LK L+++F + GIK L D V+NHR A ++ G++ IF G RL+W
Sbjct: 562 SRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGG-----RLNWDDR 616
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
+ D + G+GN +G++F AP+IDH V+K+L +W+ W++ E+G+DGWR DFV
Sbjct: 617 AVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFV 675
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAA 264
+G+ K YME + P FAVGE WDSLSY G+ D NQD HR + DW+ A G A
Sbjct: 676 RGFWGGYVKDYMEASEPYFAVGEYWDSLSYTY-GEMDYNQDAHRQRIVDWINATNGTAGA 734
Query: 265 FDFTTKGILQAAVQ-GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD 323
FD TTKGIL +A++ E WRL D GKPPG +G P AVTFI+NHDTGSTQ W FP
Sbjct: 735 FDVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEG 794
Query: 324 KVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVY 383
K M GYAYILTHPGTP +FYDH F I+ L ++RNR I+ S V I ++ DVY
Sbjct: 795 KEMQGYAYILTHPGTPAVFYDHIFS-HYHPEIASLISLRNRQKIHCRSEVKITKAERDVY 853
Query: 384 IAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 423
A I ++V MKIGP P ++ VA +G DY VWE
Sbjct: 854 AAIIDEKVAMKIGPGHYEPPNGPQNWSVALEGQDYKVWET 893
|
Length = 894 |
| >gnl|CDD|236518 PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Score = 183 bits (468), Expect = 4e-53
Identities = 114/411 (27%), Positives = 155/411 (37%), Gaps = 95/411 (23%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ---GYMPGRLYDL 82
+ Q F W N G +N L P+L+ AGIT VWLPP + + GY L+DL
Sbjct: 6 MMQYFEWYLPND-GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDL 64
Query: 83 D--------ASKYGSQADLKSLIQAFRQKGIKCLADMVINH------------------- 115
+KYG++ +L + I A + GIK AD+V+NH
Sbjct: 65 GEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDD 124
Query: 116 RTAERKDGRGI--------------YCIFE------GGTSDDRLDWGPSFICR---GDKE 152
RT + I Y F+ GT D S I + K
Sbjct: 125 RTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDE-SGIFKIVGDGKG 183
Query: 153 YSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT 212
+ D +++ D+ DID +P V++EL W W GFDG+R D VK
Sbjct: 184 WDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAWFI 243
Query: 213 KVYMEN-----TSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF 267
K ++E+ F VGE W L+D+++ G FD
Sbjct: 244 KEWIEHVREVAGKDLFIVGEYW---------------SHDVDKLQDYLEQVEGKTDLFDV 288
Query: 268 TTKGILQAAVQGELWRLKDSNGKPPGFIGIL----PQNAVTFIDNHDTGSTQRL--WPFP 321
A + R D F G L P +AVTF+DNHDT Q L P
Sbjct: 289 PLHYNFHEASKQG--RDYDMRNI---FDGTLVEADPFHAVTFVDNHDTQPGQALESPVEP 343
Query: 322 SDKVMLGYAYILTHP-GTPCIFYDHFFDW-------GLKEAISKLAAVRNR 364
K L YA IL G PC+FY ++ KE + KL R
Sbjct: 344 WFK-PLAYALILLREEGYPCVFYGDYYGASGYYIDMPFKEKLDKLLLARKN 393
|
Length = 479 |
| >gnl|CDD|200457 cd11318, AmyAc_bac_fung_AmyA, Alpha amylase catalytic domain found in bacterial and fungal Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 2e-41
Identities = 115/388 (29%), Positives = 155/388 (39%), Gaps = 96/388 (24%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ---GYMPGRLYD 81
+ Q F W G + L P+L+ GIT VWLPP + + GY LYD
Sbjct: 3 TMMQYFEWYLPAD-GQHWKRLAEDAPELAELGITAVWLPPAYKGASGTEDVGYDVYDLYD 61
Query: 82 L---D-----ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA--------------- 118
L D +KYG++ +L I+A + GI+ AD V+NH+
Sbjct: 62 LGEFDQKGTVRTKYGTKEELLEAIKALHENGIQVYADAVLNHKAGADETETVKAVEVDPN 121
Query: 119 -ERKDGRGIYCI-------FEG--GT-SDDRLDW------------GPSFICRGDKEYSD 155
K+ Y I F G G SD + +W I + + E
Sbjct: 122 DRNKEISEPYEIEAWTKFTFPGRGGKYSDFKWNWQHFSGVDYDQKTKKKGIFKINFEGKG 181
Query: 156 GQGNDDT---GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT 212
+ D D+ DID+ NP V++EL W W G DG+R D VK + S
Sbjct: 182 WDEDVDDENGNYDYLMGADIDYSNPEVREELKRWGKWYINTTGLDGFRLDAVKHISASFI 241
Query: 213 KVYM----ENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF 267
K ++ T D FAVGE W D AL+D++ A G ++ FD
Sbjct: 242 KDWIDHLRRETGKDLFAVGEYW---------SGDLE------ALEDYLDATDGKMSLFDV 286
Query: 268 TTKGIL-----QAAVQGELWRLKDSNGKPPGFIGIL----PQNAVTFIDNHDTGSTQRL- 317
L +A+ G + L+ F G L P AVTF+DNHDT Q L
Sbjct: 287 P----LHYNFHEASKSGGNYDLRKI------FDGTLVQSRPDKAVTFVDNHDTQPGQSLE 336
Query: 318 -WPFPSDKVMLGYAYILTHP-GTPCIFY 343
W P K L YA IL G PC+FY
Sbjct: 337 SWVEPWFKP-LAYALILLRKDGYPCVFY 363
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes bacterial and fungal proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 391 |
| >gnl|CDD|129046 smart00810, Alpha-amyl_C2, Alpha-amylase C-terminal beta-sheet domain | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-28
Identities = 38/61 (62%), Positives = 50/61 (81%)
Query: 363 NRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWE 422
RNGI++ S + ILA++AD+Y+A I ++VIMKIGP+ D+GNLIPS F +AA G DYAVWE
Sbjct: 1 KRNGIHSRSSLKILAAEADLYVAMIDEKVIMKIGPRYDVGNLIPSGFHLAASGNDYAVWE 60
Query: 423 K 423
K
Sbjct: 61 K 61
|
This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C-terminus. This domain is organised as a five-stranded anti-parallel beta-sheet. Length = 61 |
| >gnl|CDD|219596 pfam07821, Alpha-amyl_C2, Alpha-amylase C-terminal beta-sheet domain | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 1e-24
Identities = 38/63 (60%), Positives = 48/63 (76%), Gaps = 2/63 (3%)
Query: 363 NRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPS--DFKVAADGTDYAV 420
RNGI++ S V ILA+DAD+Y A I +VI+KIGP+ D+GN IPS +K+AA G DYAV
Sbjct: 1 KRNGIHSRSAVRILAADADLYAAIIDGKVIVKIGPRYDVGNWIPSGRGWKLAASGNDYAV 60
Query: 421 WEK 423
WEK
Sbjct: 61 WEK 63
|
This domain is organised as a five-stranded anti-parallel beta-sheet. It is the probable result of a decay of the common-fold. Length = 63 |
| >gnl|CDD|215737 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 3e-22
Identities = 87/325 (26%), Positives = 129/325 (39%), Gaps = 62/325 (19%)
Query: 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDL-DASK----YGSQADLKSLIQAFRQK 103
+ L + G+T +WL P S PQ Y YD+ D K +G+ D K LI ++
Sbjct: 10 LDYLKDLGVTAIWLSPIFDS--PQSYH---GYDITDYYKIDPHFGTMDDFKELIDKAHER 64
Query: 104 GIKCLADMVINHRT----------AERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEY 153
GIK + D+V NH + + + + Y I+ + +W F
Sbjct: 65 GIKVILDLVPNHTSDEHAWFQESRSSKDNPYRDYYIWRIYSPP--NNWISYFG------G 116
Query: 154 SDGQGNDDTGEDFQPA-PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK----GYA 208
S ++D F + PD++ NP V+KEL DW+ + G DG+R D VK G+
Sbjct: 117 SAWSDDEDGQYLFLVSLPDLNTENPEVRKELKDWVVKFWLDKGIDGFRIDAVKHISKGFW 176
Query: 209 PSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF 267
T+ M PD F VGE W D + A L + F+F
Sbjct: 177 HEFTQ-EMNEYKPDVFTVGEVWGGS--DEDARVYAYN--SYMEL----------ESGFNF 221
Query: 268 TTKGILQAAVQGELWRLKDSNGKPPGFIGIL---------PQNAVTFIDNHDTGSTQRLW 318
+ Q +RL + K ++ VTF+ NHD +
Sbjct: 222 PHFDLGQNVFIP--FRLNPFSAK--DLKEMISSWQSDYPDVDWLVTFLGNHDQPRFLSRF 277
Query: 319 PFPSDKVMLGYAYILTHPGTPCIFY 343
S K+ L A +LT PGTP I+Y
Sbjct: 278 GDDSAKIKLALALLLTLPGTPYIYY 302
|
Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain. Length = 314 |
| >gnl|CDD|214758 smart00642, Aamy, Alpha-amylase domain | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 4e-21
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA- 84
F + + G + + L + G+T +WL P +S PQGY YD+
Sbjct: 3 YPDRFADGNGDGGGDLQG-IIEKLDYLKDLGVTAIWLSPIFES--PQGYPSYHGYDISDY 59
Query: 85 ----SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118
++G+ D K L+ A +GIK + D+VINH +
Sbjct: 60 KQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97
|
Length = 166 |
| >gnl|CDD|223443 COG0366, AmyA, Glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.4 bits (216), Expect = 1e-18
Identities = 79/371 (21%), Positives = 123/371 (33%), Gaps = 34/371 (9%)
Query: 34 SSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQAD 92
GG + + L G+ +WL P +S A GY +D +G++ D
Sbjct: 20 PDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVD-PHFGTEED 78
Query: 93 LKSLIQAFRQKGIKCLADMVINH-----------RTAERKDGRGIYCIFEGGTSDDRL-- 139
K L++ ++GIK + D+V NH R+++ R Y I+ D
Sbjct: 79 FKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPN 138
Query: 140 DWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDG 198
+W F + G+ Q PD++ NP V++EL D + WL G DG
Sbjct: 139 NWFSVFGGDAWTWGNTGEYYLHLFSSEQ--PDLNWENPEVREELLDVVKFWLD--KGVDG 194
Query: 199 WRFDFVKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA 257
+R D K + E + E + +A D
Sbjct: 195 FRLDAAKHISKDFGLPPSEENLTFLEEIHEYLREENPDVLIYGEAITDVGEAPGAVKEDF 254
Query: 258 A-------GGAVAAFDFTTKGILQAAVQGELW-RLKDSNGKPPGFIGILPQNAVTFIDNH 309
A FDF+ G+ A+ LK+ P + + F+ NH
Sbjct: 255 ADNTSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPLAVNLNDGWNNLFLSNH 314
Query: 310 DTGSTQRLW----PFPSDKVMLGYAYILTHPGTPCIFY-DHFFDWGLKEAISKLAAVRNR 364
D + L A + PGTP I+Y D K+ K
Sbjct: 315 DQPRLLSRFGDDVGGRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVEL 374
Query: 365 NGINTASRVNI 375
+ I SR
Sbjct: 375 DSIILLSRDGC 385
|
Length = 505 |
| >gnl|CDD|200459 cd11320, AmyAc_AmyMalt_CGTase_like, Alpha amylase catalytic domain found in maltogenic amylases, cyclodextrin glycosyltransferase, and related proteins | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 4e-15
Identities = 77/331 (23%), Positives = 119/331 (35%), Gaps = 54/331 (16%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQ---SVAP-------QGYMPGRLYDLDASKYG 88
GG + + + +P L + G+T +W+ PP + S GY + +G
Sbjct: 43 GGDWQGIIDKLPYLKDLGVTAIWISPPVENINSPIEGGGNTGYHGYWARDFKRTN-EHFG 101
Query: 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG-IYCI--FEGGTSDDRLDWGPSF 145
+ D L+ A GIK + D V NH + G +Y G +D W F
Sbjct: 102 TWEDFDELVDAAHANGIKVIIDFVPNHSSPADYAEDGALYDNGTLVGDYPNDDNGW---F 158
Query: 146 ICRGDKEYSDGQGNDDTGEDFQPA-----PDIDHLNPRVQKELSD-WMNWLKTEIGFDGW 199
G + E + D++ NP V + L D WL + G DG
Sbjct: 159 HHNGGI------DDWSDREQVRYKNLFDLADLNQSNPWVDQYLKDAIKFWL--DHGIDGI 210
Query: 200 RFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGP--DGKPDANQDGHRGALKDWVQA 257
R D VK P K + + A+ K ++G G PD + D+V+
Sbjct: 211 RVDAVKHMPPGWQKSFAD------AIYSKKPVFTFGEWFLGSPDPGYE-------DYVKF 257
Query: 258 A---GGAVAAFDFTTKGILQ--AAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTG 312
A G ++ F I A ++ L + + VTFIDNHD
Sbjct: 258 ANNSGMSLLDFPLNQA-IRDVFAGFTATMYDLDAMLQQTSSDYNY-ENDLVTFIDNHDMP 315
Query: 313 STQRLWPFPSDKVMLGYAYILTHPGTPCIFY 343
++ A++LT G P I+Y
Sbjct: 316 RF-LTLNNNDKRLHQALAFLLTSRGIPVIYY 345
|
Enzymes such as amylases, cyclomaltodextrinase (CDase), and cyclodextrin glycosyltransferase (CGTase) degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs), consisting of six, seven, or eight glucose residues, respectively. CGTases are characterized depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The maltogenic alpha-amylase from Bacillus is a five-domain structure, unlike most alpha-amylases, but similar to that of cyclodextrin glycosyltransferase. In addition to the A, B, and C domains, they have a domain D and a starch-binding domain E. Maltogenic amylase is an endo-acting amylase that has activity on cyclodextrins, terminally modified linear maltodextrins, and amylose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 389 |
| >gnl|CDD|200479 cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 4e-14
Identities = 91/333 (27%), Positives = 132/333 (39%), Gaps = 78/333 (23%)
Query: 52 LSNAGITHVWLPP------PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGI 105
L + G+T +WL P PS S GY Y +D ++GS D K L+ +G+
Sbjct: 54 LQDLGVTAIWLTPLLENDMPSYSY--HGYAATDFYRIDP-RFGSNEDYKELVSKAHARGM 110
Query: 106 KCLADMVIN-----HRTAER---KD---GRGIYCIFEGGTSDDRLDWGPSFICRGDKE-Y 153
K + DMV N H + KD Y T+ R + + D++ +
Sbjct: 111 KLIMDMVPNHCGSEHWWMKDLPTKDWINQTPEY----TQTNHRRTALQDPYASQADRKLF 166
Query: 154 SDGQGNDDTGEDFQPA-PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD--------FV 204
DG F P PD++ NP V + L W G DG R D F+
Sbjct: 167 LDGW--------FVPTMPDLNQRNPLVARYLIQNSIWWIEYAGLDGIRVDTYPYSDKDFM 218
Query: 205 KGYAPSITKVYMENTSPDF-AVGEKWDS----LSYGPDGKPDANQDGHRGALKDWVQAAG 259
+ +I + Y P+F VGE+W ++Y GK N DG+ L
Sbjct: 219 SEWTKAIMEEY-----PNFNIVGEEWSGNPAIVAYWQKGK--KNPDGYDSHLP------- 264
Query: 260 GAVAAFDFTTKGILQAAVQGE------LWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGS 313
+ DF + L+ A+ E L RL ++ F+ P N V F+DNHDT
Sbjct: 265 ---SVMDFPLQDALRDALNEEEGWDTGLNRLYETLAN--DFLYPDPNNLVIFLDNHDT-- 317
Query: 314 TQRLWPFPS---DKVMLGYAYILTHPGTPCIFY 343
R + DK L A +LT G P ++Y
Sbjct: 318 -SRFYSQVGEDLDKFKLALALLLTTRGIPQLYY 349
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 407 |
| >gnl|CDD|200454 cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 78/342 (22%), Positives = 128/342 (37%), Gaps = 63/342 (18%)
Query: 30 FNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-------------PQGYMP 76
F+W +N++K ++P+++ AG T + PP +S P Y
Sbjct: 8 FDWS--------FNTIKENLPEIAAAGYTAIQTSPPQKSKEGGNEGGNWWYRYQPTDYRI 59
Query: 77 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSD 136
G G++ D K+L A + GIK + D+V NH +G I ++ S
Sbjct: 60 GNNQL------GTEDDFKALCAAAHKYGIKIIVDVVFNHMA---NEGSAIEDLWYP--SA 108
Query: 137 DRLDWGPSFIC--RGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 194
D + P G ++D T PD++ NP VQ++ ++ L +
Sbjct: 109 DIELFSPEDFHGNGGISNWNDRW--QVTQGRLGGLPDLNTENPAVQQQQKAYLKALV-AL 165
Query: 195 GFDGWRFDFVK----GYAPSITKVYMENTSPDFAVGEKWDSLSYG---PDGKPDANQDGH 247
G DG+RFD K PS + N +K YG DG +
Sbjct: 166 GVDGFRFDAAKHIELPDEPSKASDFWTNI---LNNLDKDGLFIYGEVLQDGGSRDSD--- 219
Query: 248 RGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILP-QNAVTFI 306
++ G +A+ F L+ A++ L + P + LP AVT++
Sbjct: 220 ---YASYLSLGGVTASAYGFP----LRGALKNAF--LFGGSLDPASYGQALPSDRAVTWV 270
Query: 307 DNHDT--GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIFYDH 345
++HDT + L +AY+ GTP F
Sbjct: 271 ESHDTYNNDGFESTGLDDEDERLAWAYLAARDGGTPLFFSRP 312
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Firmicutes, Proteobacteria, Actinobacteria, and Cyanobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 352 |
| >gnl|CDD|200478 cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 7e-13
Identities = 76/317 (23%), Positives = 109/317 (34%), Gaps = 104/317 (32%)
Query: 52 LSNAGITHVWLPPPSQSVAPQ-------GYMPGRLYDLDASKYGSQADLKSLIQAFRQKG 104
+ + G T +W+ P ++ + Q GY Y +D G+ ADL+ LI A +G
Sbjct: 54 IKDLGFTAIWITPVVKNRSVQAGSAGYHGYWGYDFYRID-PHLGTDADLQDLIDAAHARG 112
Query: 105 IKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGE 164
IK + D+V+NH T D
Sbjct: 113 IKVILDIVVNH------------------TGD---------------------------- 126
Query: 165 DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS-----ITKVYMENT 219
++ NP V L D W + G DG+R D VK +
Sbjct: 127 -------LNTENPEVVDYLIDAYKWW-IDTGVDGFRIDTVKHVPREFWQEFAPAIRQAAG 178
Query: 220 SPDFAV-GEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKG-ILQAAV 277
PDF + GE + DG + + AGG + DF G I A
Sbjct: 179 KPDFFMFGEVY---------------DGDPSYIAPYTTTAGG-DSVLDFPLYGAIRDAFA 222
Query: 278 QGE----LWRLKDSNGKPPGFIGILPQNA---VTFIDNHDTG----STQRLWPFPSDKVM 326
G L L S+ L +A VTF+DNHD G S + + ++
Sbjct: 223 GGGSGDLLQDLFLSDD--------LYNDATELVTFLDNHDMGRFLSSLKDGSADGTARLA 274
Query: 327 LGYAYILTHPGTPCIFY 343
L A + T G PCI+Y
Sbjct: 275 LALALLFTSRGIPCIYY 291
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 344 |
| >gnl|CDD|200451 cd00551, AmyAc_family, Alpha amylase catalytic domain family | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-12
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 34 SSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRL---YDLDASKYGSQ 90
S GG + + + L + G+T +WL P +S GY Y + G++
Sbjct: 16 SGGDGGGDLKGIIDKLDYLKDLGVTAIWLTPIFESPEYDGYDKDDGYLDYYEIDPRLGTE 75
Query: 91 ADLKSLIQAFRQKGIKCLADMVINHR 116
D K L++A ++GIK + D+V NH
Sbjct: 76 EDFKELVKAAHKRGIKVILDLVFNHD 101
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; and C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost this catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 260 |
| >gnl|CDD|200477 cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 3e-11
Identities = 73/329 (22%), Positives = 113/329 (34%), Gaps = 96/329 (29%)
Query: 87 YGSQADLKSLIQAFRQKGIKCLADMVINH--------RTAERKDGRGIYCIFEGGTSDDR 138
G++ D K L++ ++GI+ + D V NH + + Y
Sbjct: 99 LGTEEDFKELVEEAHKRGIRVILDGVFNHTGDDSPYFQDVLKYGESSAY----------- 147
Query: 139 LDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFD 197
I ++D N ++ P ++ NP V++ L WLK E D
Sbjct: 148 --QDWFSIYYFWPYFTDEPPNYESWWGVPSLPKLNTENPEVREYLDSVARYWLK-EGDID 204
Query: 198 GWRFD--------FVKGYAPSITKVYMENTSPDFA-VGEKWDSLSYGPDGKPDANQD--- 245
GWR D F + K ++ +PD +GE W+ D +P D
Sbjct: 205 GWRLDVADEVPHEFWRE----FRKA-VKAVNPDAYIIGEVWE------DARPWLQGDQFD 253
Query: 246 -----GHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
R A+ D++ AG + A +F + L L+ + K
Sbjct: 254 SVMNYPFRDAVLDFL--AGEEIDAEEFANR----------LNSLRANYPKQVL------Y 295
Query: 301 NAVTFIDNHDTGSTQR-LWPFPSDK--VMLGYAYILTHPGTPCIFY----------DHF- 346
+ +D+HDT R L DK + L A T PG PCI+Y D
Sbjct: 296 AMMNLLDSHDT---PRILTLLGGDKARLKLALALQFTLPGAPCIYYGDEIGLEGGKDPDN 352
Query: 347 ---FDWG-------LKEAISKLAAVRNRN 365
W L E KL A+R +
Sbjct: 353 RRPMPWDEEKWDQDLLEFYKKLIALRKEH 381
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 389 |
| >gnl|CDD|200455 cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 7e-11
Identities = 79/336 (23%), Positives = 119/336 (35%), Gaps = 92/336 (27%)
Query: 56 GITHVWLPP--PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113
G+ +WL P PS S GY Y ++ YG+ D + LI ++GIK + D+VI
Sbjct: 36 GVNGIWLMPIFPSPSY--HGYDVTDYYAIE-PDYGTMEDFERLIAEAHKRGIKVIIDLVI 92
Query: 114 NHRTAER----KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDT------G 163
NH T+ ++ S R D+ +I D + G
Sbjct: 93 NH-TSSEHPWFQEAA------SSPDSPYR-DY---YIWADDDPGGWSSWGGNVWHKAGDG 141
Query: 164 EDFQPA-----PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWRFDFVKGYAPSITKV 214
+ A PD++ NP V++E+ W++ G DG+R D K +
Sbjct: 142 GYYYGAFWSGMPDLNLDNPAVREEIKKIAKFWLD-----KGVDGFRLDAAKHIYENGEGQ 196
Query: 215 ---------------YMENTSPD-FAVGEKWDSLS-YGPDGKPDANQDGHRGALKDWVQA 257
Y+++ PD + VGE WD S P
Sbjct: 197 ADQEENIEFWKEFRDYVKSVKPDAYLVGEVWDDPSTIAPY-------------------Y 237
Query: 258 AGGAVAAFDFT-TKGILQAAVQGELW-----RLKDSNGK----PPGFIGILPQNAVTFID 307
A G +AF+F + I+ + G L P +I +A F+
Sbjct: 238 ASGLDSAFNFDLAEAIIDSVKNGGSGAGLAKALLRVYELYAKYNPDYI-----DA-PFLS 291
Query: 308 NHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFY 343
NHD K L A +LT PG P I+Y
Sbjct: 292 NHDQDRVASQLGGDEAKAKLAAALLLTLPGNPFIYY 327
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Chloroflexi, Dictyoglomi, and Fusobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 403 |
| >gnl|CDD|200456 cd11317, AmyAc_bac_euk_AmyA, Alpha amylase catalytic domain found in bacterial and eukaryotic Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 60/280 (21%), Positives = 103/280 (36%), Gaps = 65/280 (23%)
Query: 80 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRL 139
Y L+ S+ G++A+ + ++ G++ D VINH + + R C G L
Sbjct: 56 YKLN-SRSGTEAEFRDMVNRCNAAGVRVYVDAVINHMAGDANEVR--NCELVG------L 106
Query: 140 DWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGW 199
D++ + V+ +++D++N L +G G+
Sbjct: 107 ------------------------------ADLNTESDYVRDKIADYLNDL-ISLGVAGF 135
Query: 200 RFDFVKGYAPS-ITKVYMENTSPDFAVGEKWDSLSYGPDG-KPDANQ---DGHRGALKDW 254
R D K P + + + L+ GP G +P Q DG A++
Sbjct: 136 RIDAAKHMWPEDLAAIL-----------ARLKDLNGGPLGSRPYIYQEVIDGGGEAIQPS 184
Query: 255 VQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT--- 311
G V F + G+ A L + G+ G + + AV F+DNHD
Sbjct: 185 EYTGNGDVTEFRYAR-GLSNAFRGKIKLLLLKNFGEGWGLLP--SERAVVFVDNHDNQRG 241
Query: 312 --GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIFYDHFFD 348
G L + L A++L P GTP + ++F
Sbjct: 242 HGGGGDMLTYKDGRRYKLANAFMLAWPYGTPRVMSSYYFS 281
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes AmyA proteins from bacteria, fungi, mammals, insects, mollusks, and nematodes. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 329 |
| >gnl|CDD|200451 cd00551, AmyAc_family, Alpha amylase catalytic domain family | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-10
Identities = 34/172 (19%), Positives = 53/172 (30%), Gaps = 32/172 (18%)
Query: 185 DWMNWLKTEIGFDGWRFDFVKGYAPS--------ITKVYMENTSPDFAVGEKWDSLSYGP 236
D + + + G DG+R D K I K +GE W
Sbjct: 101 DILRFWL-DEGVDGFRLDAAKHVPKPEPVEFLREIRKDAKLAKPDTLLLGEAWGG---PD 156
Query: 237 DGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIG 296
+ A D ++ D+ + L+ P G
Sbjct: 157 ELLAKAGFDDGLDSVFDFP---------LLEALRDALKGGEGALAILAALLLLNPEGA-- 205
Query: 297 ILPQNAVTFIDNHDT-----GSTQRLWPFPSDKVMLGYAYILTHPGTPCIFY 343
V F+ NHDT + ++ ++ L A +LT PGTP I+Y
Sbjct: 206 ----LLVNFLGNHDTFRLADLVSYKIVELRKARLKLALALLLTLPGTPMIYY 253
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; and C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost this catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 260 |
| >gnl|CDD|200491 cd11354, AmyAc_bac_CMD_like, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 76/299 (25%), Positives = 112/299 (37%), Gaps = 82/299 (27%)
Query: 80 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRL 139
Y +D + G D +LI A ++G++ L D V NH + +G S++
Sbjct: 67 YRID-PRLGDDEDFDALIAAAHERGLRVLLDGVFNHVGRSHPAVAQA--LEDGPGSEEDR 123
Query: 140 DWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDG 198
G + G + +G++D ++DH +P V + D M WL + G DG
Sbjct: 124 WHGHA----GGGTPAVFEGHEDL-------VELDHSDPAVVDMVVDVMCHWL--DRGIDG 170
Query: 199 WRFDFVKGYAPSITKVYMENTSPDF------AVGEKWDSLSYGPDGKPDANQDGHRGALK 252
WR D YA P+F V E+ PDA
Sbjct: 171 WRLDAA--YA----------VPPEFWARVLPRVRERH----------PDA---------- 198
Query: 253 DWVQAAGGAVAAFD---FTTKGILQAAVQGELWR-----LKDSN--------GKPPGFI- 295
W+ G V D + + Q ELW+ +KD N G+ F+
Sbjct: 199 -WIL---GEVIHGDYAGIVAASGMDSVTQYELWKAIWSSIKDRNFFELDWALGRHNEFLD 254
Query: 296 GILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFY-DHFFDWGLKE 353
+PQ TF+ NHD T+ D L A + T PG P I+Y D G+KE
Sbjct: 255 SFVPQ---TFVGNHDV--TRIASQVGDDGAALAAAVLFTVPGIPSIYYGDEQGFTGVKE 308
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 357 |
| >gnl|CDD|200458 cd11319, AmyAc_euk_AmyA, Alpha amylase catalytic domain found in eukaryotic Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 77/321 (23%), Positives = 119/321 (37%), Gaps = 76/321 (23%)
Query: 54 NAGITHVWLPPPSQSV--------APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGI 105
G +W+ P +++ A GY LY L+ +G+ DLK+L +A ++G+
Sbjct: 54 GMGFDAIWISPIVKNIEGNTAYGEAYHGYWAQDLYSLN-PHFGTADDLKALSKALHKRGM 112
Query: 106 KCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS------DGQGN 159
+ D+V+NH +D+ SF+ D Y N
Sbjct: 113 YLMVDVVVNH--------------MASAGPGSDVDYS-SFVPFNDSSYYHPYCWITDYNN 157
Query: 160 DD------TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITK 213
G+D PD++ NP V L+DW+ L + DG R D K
Sbjct: 158 QTSVEDCWLGDDVVALPDLNTENPFVVSTLNDWIKNLVSNYSIDGLRIDTAKHVRKDFWP 217
Query: 214 VYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGG---------AVAA 264
++E FA+GE + DG P+ + + G V A
Sbjct: 218 GFVEAAGV-FAIGEVF-------DGDPN--------YVCPYQNYLDGVLNYPLYYPLVDA 261
Query: 265 FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDK 324
F +TKG + A V S+ K P +G TF++NHD R + SD+
Sbjct: 262 F-QSTKGSMSALVDT--INSVQSSCKDPTLLG-------TFLENHD---NPRFLSYTSDQ 308
Query: 325 --VMLGYAYILTHPGTPCIFY 343
A+ L G P I+Y
Sbjct: 309 ALAKNALAFTLLSDGIPIIYY 329
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes eukaryotic alpha-amylases including proteins from fungi, sponges, and protozoans. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 375 |
| >gnl|CDD|200488 cd11350, AmyAc_4, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 42/175 (24%), Positives = 65/175 (37%), Gaps = 34/175 (19%)
Query: 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ------GYMPGRLYDLDASKYGSQADLKS 95
+ + + + L + G+ + L P V GY P + LD + YG+ DLK
Sbjct: 32 FKGVIDKLDYLQDLGVNAIELMP----VQEFPGNDSWGYNPRHYFALDKA-YGTPEDLKR 86
Query: 96 LIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLD---WGPSFICRGDKE 152
L+ Q+GI + D+V NH +G+ RL W
Sbjct: 87 LVDECHQRGIAVILDVVYNH-----AEGQSPLA---------RLYWDYWYNPPPADPPWF 132
Query: 153 YSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207
G G DF +H +P + + D + E DG+RFD KG+
Sbjct: 133 NVWGPHFYYVGYDF------NHESPPTRDFVDDVNRYWLEEYHIDGFRFDLTKGF 181
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 390 |
| >gnl|CDD|200473 cd11334, AmyAc_TreS, Alpha amylase catalytic domain found in Trehalose synthetase | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 6e-07
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 40/178 (22%)
Query: 52 LSNAGITHVWLPP--PSQSVAPQGYMPGR--------LYDLDASKYGSQADLKSLIQAFR 101
L G+T +WL P PS P R Y +D + G+ D ++
Sbjct: 36 LQWLGVTAIWLLPFYPS---------PLRDDGYDIADYYGVD-PRLGTLGDFVEFLREAH 85
Query: 102 QKGIKCLADMVINHRTAE-------RKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154
++GI+ + D+V+NH + + R+D Y + + I D E S
Sbjct: 86 ERGIRVIIDLVVNHTSDQHPWFQAARRDPDSPYRDYYVWSDTPPKYKDARIIFP-DVEKS 144
Query: 155 DGQGNDDTGE-------DFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFV 204
+ ++ G Q PD++ NP V++E+ M+ WL ++G DG+R D V
Sbjct: 145 NWTWDEVAGAYYWHRFYSHQ--PDLNFDNPAVREEILRIMDFWL--DLGVDGFRLDAV 198
|
Trehalose synthetase (TreS) catalyzes the reversible interconversion of trehalose and maltose. The enzyme catalyzes the reaction in both directions, but the preferred substrate is maltose. Glucose is formed as a by-product of this reaction. It is believed that the catalytic mechanism may involve the cutting of the incoming disaccharide and transfer of a glucose to an enzyme-bound glucose. This enzyme also catalyzes production of a glucosamine disaccharide from maltose and glucosamine. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 447 |
| >gnl|CDD|200467 cd11328, AmyAc_maltase, Alpha amylase catalytic domain found in maltase (also known as alpha glucosidase) and related proteins | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 67/194 (34%)
Query: 52 LSNAGITHVWLPPPSQSVAPQ---GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108
+ GI +WL P +S P GY D+D +G+ D + LI ++ G+K +
Sbjct: 39 FKDIGIDAIWLSPIFKS--PMVDFGYDISDFTDID-PIFGTMEDFEELIAEAKKLGLKVI 95
Query: 109 ADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFI--CRGDKEYSD------GQGND 160
D V NH S D +W F + D+ Y D G+ ND
Sbjct: 96 LDFVPNH-------------------SSDEHEW---FQKSVKRDEPYKDYYVWHDGKNND 133
Query: 161 DTGED---------------------------FQP-APDIDHLNPRVQKELSDWMN-WLK 191
+ F PD+++ NP+V +E+ + + WL
Sbjct: 134 NGTRVPPNNWLSVFGGSAWTWNEERQQYYLHQFAVKQPDLNYRNPKVVEEMKNVLRFWL- 192
Query: 192 TEIGFDGWRFDFVK 205
+ G DG+R D V
Sbjct: 193 -DKGVDGFRIDAVP 205
|
Maltase (EC 3.2.1.20) hydrolyzes the terminal, non-reducing (1->4)-linked alpha-D-glucose residues in maltose, releasing alpha-D-glucose. In most cases, maltase is equivalent to alpha-glucosidase, but the term "maltase" emphasizes the disaccharide nature of the substrate from which glucose is cleaved, and the term "alpha-glucosidase" emphasizes the bond, whether the substrate is a disaccharide or polysaccharide. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 470 |
| >gnl|CDD|200452 cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in archaeal and bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 66/320 (20%), Positives = 104/320 (32%), Gaps = 96/320 (30%)
Query: 84 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDD------ 137
+YG+ D K+L+ +G+K + D V NH T+ D
Sbjct: 69 NPEYGTLEDFKALVDEAHDRGMKVILDWVANH------------------TAWDHPLVEE 110
Query: 138 RLDWGPSFICRGDKEYSDGQGND-DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGF 196
+W + D GN + D+ D+D+ NP ++ + D M + E
Sbjct: 111 HPEW---Y-------LRDSDGNITNKVFDWTDVADLDYSNPELRDYMIDAMKYWVREFDV 160
Query: 197 DGWRFDFVKGYAP------SITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGA 250
DG+R D V P + ++ PD + + D D A
Sbjct: 161 DGFRCD-VAWGVPLDFWKEARAELRAVK--PDVF----MLAEAEPRDD------DELYSA 207
Query: 251 LKDWVQAAGGAVAAFDFTTKGILQAAVQGE--LWRLKDSNGKPPGFIGILPQNAV--TFI 306
D +D+ L +G+ L D+ P+NAV F+
Sbjct: 208 F-D---------MTYDWDLHHTLNDVAKGKASASDLLDALNA---QEAGYPKNAVKMRFL 254
Query: 307 DNHDTGSTQRLW---PFPSDKVMLGYAYILTHPGTPCIF------YDH---FFDW----- 349
+NHD W D + A T PG P I+ D FF+
Sbjct: 255 ENHDENR----WAGTVGEGDALRAAAALSFTLPGMPLIYNGQEYGLDKRPSFFEKDPIDW 310
Query: 350 ----GLKEAISKLAAVRNRN 365
L + KL A++ N
Sbjct: 311 TKNHDLTDLYQKLIALKKEN 330
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes firmicutes, bacteroidetes, and proteobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 336 |
| >gnl|CDD|200494 cd11359, AmyAc_SLC3A1, Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 31/171 (18%)
Query: 56 GITHVWLPPPSQSVAPQ---GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112
G+ VWL P +S P GY D+D +G+ D + L+ A +G+K + D V
Sbjct: 41 GVKTVWLSPIYKS--PMKDFGYDVSDFTDIDPM-FGTMEDFERLLAAMHDRGMKLIMDFV 97
Query: 113 INH---------RTAERKDGRGIYCIFEGGTSDDRLD--------WGPSFICRGDKEYSD 155
NH + + Y I+ T+D +G S EY +
Sbjct: 98 PNHTSDKHEWFQLSRNSTNPYTDYYIWADCTADGPGTPPNNWVSVFGNSAW-----EYDE 152
Query: 156 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFVK 205
+ + + PD++ NP VQ+E+ D + WL G DG+R D VK
Sbjct: 153 KRNQCYLHQFLKEQPDLNFRNPDVQQEMDDVLRFWLDK--GVDGFRVDAVK 201
|
SLC3A1, also called Neutral and basic amino acid transport protein rBAT or NBAT, plays a role in amino acid and cystine absorption. Mutations in the gene encoding SLC3A1 causes cystinuria, an autosomal recessive disorder characterized by the failure of proximal tubules to reabsorb filtered cystine and dibasic amino acids. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 456 |
| >gnl|CDD|233874 TIGR02456, treS_nterm, trehalose synthase | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 30/192 (15%)
Query: 33 ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKY----- 87
+S+ G + L + + L G+ +WL P QS P R D S Y
Sbjct: 18 DSNGDGIGDFPGLTSKLDYLKWLGVDALWLLPFFQS-------PLRDDGYDVSDYRAILP 70
Query: 88 --GSQADLKSLIQAFRQKGIKCLADMVINHRT-------AERKDGRGIYCIFEGGTSDDR 138
G+ D K + +G++ + D+V+NH + R + G Y F SD
Sbjct: 71 EFGTIDDFKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFY-VWSDTD 129
Query: 139 LDWGPSFICRGDKEYSDGQGNDDTGED-----FQPAPDIDHLNPRVQKELSDWMN-WLKT 192
+ + I D E S+ + + F PD+++ NP V + D M WL
Sbjct: 130 EKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHDAVHDVMRFWL-- 187
Query: 193 EIGFDGWRFDFV 204
++G DG+R D V
Sbjct: 188 DLGVDGFRLDAV 199
|
Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PMID:15378530) [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 539 |
| >gnl|CDD|233851 TIGR02403, trehalose_treC, alpha,alpha-phosphotrehalase | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 29/165 (17%)
Query: 56 GITHVWLPPPSQSVAPQ---GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112
G+ ++WL P S PQ GY Y ++ +G+ AD + L+ +++ IK + DMV
Sbjct: 40 GVDYIWLNPFYVS--PQKDNGYDVSDYYAINPL-FGTMADFEELVSEAKKRNIKIMLDMV 96
Query: 113 INHRTAE----RKDGRGI-----YCIFEGGTSDDRLDW-----GPSFICRGDKEYSDGQG 158
NH + E +K G + I+ +W G ++ GD
Sbjct: 97 FNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHL 156
Query: 159 NDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFD 202
D T D++ NP V++EL D +N W + G DG+R D
Sbjct: 157 FDKT------QADLNWENPEVREELKDVVNFWR--DKGVDGFRLD 193
|
Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor. Length = 543 |
| >gnl|CDD|200476 cd11337, AmyAc_CMD_like, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 4e-05
Identities = 68/330 (20%), Positives = 94/330 (28%), Gaps = 132/330 (40%)
Query: 88 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFIC 147
G+ D K+L+ A ++GI+ + D V NH GR + W
Sbjct: 71 GTNEDFKALVAALHERGIRVVLDGVFNHV------GRDFF-------------WE----- 106
Query: 148 RGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFVKG 206
G+ D ++ NP V L D + W++ E DG R D
Sbjct: 107 ----------GHYDL-------VKLNLDNPAVVDYLFDVVRFWIE-EFDIDGLRLD---- 144
Query: 207 YAPSITKVYMENTSPDFAVGEKWDSLSYGPDG-KPDANQDG---HRGALKDWVQAAGGAV 262
A + PDF W L KPD G H G WV +
Sbjct: 145 AAYCL--------DPDF-----WRELRPFCRELKPDFWLMGEVIH-GDYNRWVNDSM--- 187
Query: 263 AAFDFTTKGILQAAVQGELWR-----LKDSN----------GKPPG--FIGILPQNAVTF 305
L + EL++ D N + G F
Sbjct: 188 ----------LDSVTNYELYKGLWSSHNDHNFFEIAHSLNRLFRHNGLYRGFHLYT---F 234
Query: 306 IDNHDTG---STQRLWPFPSDKVMLGYAYILTHPGTPCIFY------------------- 343
+DNHD S + L YA + T PG P I+Y
Sbjct: 235 VDNHDVTRIASILG----DKAHLPLAYALLFTMPGIPSIYYGSEWGIEGVKEEGSDADLR 290
Query: 344 --------DHFFDWGLKEAISKLAAVRNRN 365
L I L A+R R+
Sbjct: 291 PLPLRPAELSPLGNELTRLIQALIALRRRS 320
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is mainly bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 328 |
| >gnl|CDD|224440 COG1523, PulA, Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 40/207 (19%)
Query: 46 KNSIPDLSNAGITHVWLPP----------PSQSVA------PQGYM-PGRLYDLDASKYG 88
I L + G+T V L P + P + P Y +
Sbjct: 203 PVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPAT 262
Query: 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICR 148
+ K +++A + GI+ + D+V NH TAE + G F G +D +
Sbjct: 263 RIKEFKDMVKALHKAGIEVILDVVFNH-TAE-GNELGPTLSFRG------IDPNYYYRLD 314
Query: 149 GDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 208
D YS+G G +T ++ +P V+K + D + + E DG+RFD A
Sbjct: 315 PDGYYSNGTGCGNT---------LNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDL----A 361
Query: 209 PSITKVYMEN--TSPDFAVGEKWDSLS 233
+ + M + F GE LS
Sbjct: 362 GVLGRETMLFDINANLFLAGEGDPVLS 388
|
Length = 697 |
| >gnl|CDD|200468 cd11329, AmyAc_maltase-like, Alpha amylase catalytic domain family found in maltase | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 37/178 (20%)
Query: 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQK 103
+ + +S G V P+ + YG ++DLK L++ +QK
Sbjct: 80 FKEEHVEAISKLGAKGVIYELPADETY------------LNNSYGVESDLKELVKTAKQK 127
Query: 104 GIKCLADMVINH---------RTAERKDGRGIYCIF-EGGTSDDRLDW-----GPSFICR 148
IK + D+ NH + ++ ++ +G +W G ++
Sbjct: 128 DIKVILDLTPNHSSKQHPLFKDSVLKEPPYRSAFVWADGKGHTPPNNWLSVTGGSAWKWV 187
Query: 149 GDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFVK 205
D++Y Q D PD++ NP V EL D + WL +G G+R K
Sbjct: 188 EDRQYYLHQFGPDQ-------PDLNLNNPAVVDELKDVLKHWLD--LGVRGFRLANAK 236
|
Maltase (EC 3.2.1.20) hydrolyzes the terminal, non-reducing (1->4)-linked alpha-D-glucose residues in maltose, releasing alpha-D-glucose. The catalytic triad (DED) which is highly conserved in the other maltase group is not present in this subfamily. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 477 |
| >gnl|CDD|182849 PRK10933, PRK10933, trehalose-6-phosphate hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 8e-04
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 52 LSNAGITHVWLPPPSQSVAPQ---GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108
L G+ +WL P V+PQ GY +D + YG+ D L+ + +GI+ +
Sbjct: 42 LQKLGVDAIWLTP--FYVSPQVDNGYDVANYTAIDPT-YGTLDDFDELVAQAKSRGIRII 98
Query: 109 ADMVINHRTAE 119
DMV NH + +
Sbjct: 99 LDMVFNHTSTQ 109
|
Length = 551 |
| >gnl|CDD|200489 cd11352, AmyAc_5, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 72/355 (20%), Positives = 110/355 (30%), Gaps = 85/355 (23%)
Query: 52 LSNAGITHVWLPPPSQSVAPQ----GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKC 107
L G+T +WL P + GY D+D ++G++ DL+ L+ A +GI
Sbjct: 59 LKRLGVTALWLSPVFKQRPELETYHGYGIQNFLDVDP-RFGTREDLRDLVDAAHARGIYV 117
Query: 108 LADMVINH------------RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD----- 150
+ D+++NH ++ RG GG R D
Sbjct: 118 ILDIILNHSGDVFSYDDDRPYSSSPGYYRGFPNYPPGGWFIGGDQ-DALPEWRPDDAIWP 176
Query: 151 KEYSD-------GQGNDDTGE------DFQPAPDIDHLNPRVQKELSDWMN-----WL-K 191
E + G+ + G DF D + + D + W+
Sbjct: 177 AELQNLEYYTRKGRIRNWDGYPEYKEGDFFSLKDFRTGSGSIPSAALDILARVYQYWIAY 236
Query: 192 TEIGFDGWRFDFVK---------------GYAPSITKVYMENTSPDFAVGEKWDSLSYGP 236
+I DG+R D VK +A SI K +N F GE
Sbjct: 237 ADI--DGFRIDTVKHMEPGAARYFCNAIKEFAQSIGK---DNF---FLFGEITGGREA-- 286
Query: 237 DGKPDANQDGHRGALKDWVQAAGGAVAAFD---FTTKGILQAAVQGELWRLKDSNGKPPG 293
G + AA KG+ A +L+ G G
Sbjct: 287 ---AAYEDLDVTG-----LDAALDIPEIPFKLENVAKGLAPPAEYFQLFENSKLVGM--G 336
Query: 294 FIGILPQNAVTFIDNHDTGSTQRLWPFPSDK-----VMLGYAYILTHPGTPCIFY 343
+ VTF+D+HD +D + A L G PCI+Y
Sbjct: 337 SHRWYGKFHVTFLDDHDQVGRFYKKRRAADAAGDAQLAAALALNLFTLGIPCIYY 391
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 443 |
| >gnl|CDD|237739 PRK14510, PRK14510, putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 32/192 (16%), Positives = 51/192 (26%), Gaps = 47/192 (24%)
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQA--DLKSLIQAFRQKGIKCLADMVINHRTA 118
P GY D + + I+ + GI + D+V NH T
Sbjct: 216 HHLPQLGLSNYWGYNTVAFLAPDP-RLAPGGEEEFAQAIKEAQSAGIAVILDVVFNH-TG 273
Query: 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKE---YSDGQGN-----DDTGEDFQPAP 170
E + GP+ G Y GN + G P
Sbjct: 274 E----------------SNHY--GPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNL 315
Query: 171 DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD-----------FVKGYAPSITKVYMENT 219
+ + L W + G DG+R D F+ + + + +
Sbjct: 316 ERPFILRLPMDVLRSWA-----KRGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPV 370
Query: 220 SPDFA-VGEKWD 230
+ E WD
Sbjct: 371 LRRLKMIAEVWD 382
|
Length = 1221 |
| >gnl|CDD|200465 cd11326, AmyAc_Glg_debranch, Alpha amylase catalytic domain found in glycogen debranching enzymes | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.001
Identities = 46/185 (24%), Positives = 69/185 (37%), Gaps = 61/185 (32%)
Query: 49 IPDLSNAGITHVWLPPPSQSVAPQ-----------GYM------PGRLYDLDASKYGSQA 91
IP L G+T V L P + GY P Y D + G
Sbjct: 50 IPYLKELGVTAVELLPVHAFDDEEHLVERGLTNYWGYNTLNFFAPDPRYASDDAPGGPVD 109
Query: 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRG-- 149
+ K++++A + GI+ + D+V NH TA EGG + GP+ RG
Sbjct: 110 EFKAMVKALHKAGIEVILDVVYNH-TA------------EGG------ELGPTLSFRGLD 150
Query: 150 ----------DKEYSD--GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197
Y + G GN + +H P V + + D + + TE+ D
Sbjct: 151 NASYYRLDPDGPYYLNYTGCGN---------TLNTNH--PVVLRLILDSLRYWVTEMHVD 199
Query: 198 GWRFD 202
G+RFD
Sbjct: 200 GFRFD 204
|
Debranching enzymes facilitate the breakdown of glycogen through glucosyltransferase and glucosidase activity. These activities are performed by a single enzyme in mammals, yeast, and some bacteria, but by two distinct enzymes in Escherichia coli and other bacteria. Debranching enzymes perform two activities: 4-alpha-D-glucanotransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). 4-alpha-D-glucanotransferase catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. Amylo-alpha-1,6-glucosidase catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. In Escherichia coli, GlgX is the debranching enzyme and malQ is the 4-alpha-glucanotransferase. TreX, an archaeal glycogen-debranching enzyme has dual activities like mammals and yeast, but is structurally similar to GlgX. TreX exists in two oligomeric states, a dimer and tetramer. Isoamylase (EC 3.2.1.68) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen and their beta-limit dextrins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 433 |
| >gnl|CDD|200472 cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 22/71 (30%)
Query: 56 GITHVWLPPPSQSVAPQ---GY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKG 104
G+ +WL P S PQ GY P ++G+ D LI+ ++G
Sbjct: 38 GVDAIWLSPIYPS--PQVDNGYDISDYRAIDP---------EFGTMEDFDELIKEAHKRG 86
Query: 105 IKCLADMVINH 115
IK + D+V+NH
Sbjct: 87 IKIIMDLVVNH 97
|
The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 428 |
| >gnl|CDD|200486 cd11348, AmyAc_2, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 68/320 (21%), Positives = 113/320 (35%), Gaps = 92/320 (28%)
Query: 84 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE-------RKDGRGIYCIFEGGTSD 136
A +YG+ DL L ++GI L D+V H + E +K Y
Sbjct: 63 APRYGTNEDLVRLFDEAHKRGIHVLLDLVPGHTSDEHPWFKESKKAENNEY--------S 114
Query: 137 DRLDWGPSFICRGD-----KEYSDGQGNDDTGE-DFQPAPDIDHLNP------------- 177
DR W S G ++ GN QPA + +P
Sbjct: 115 DRYIWTDSIWSGGPGLPFVGGEAERNGNYIVNFFSCQPALNYGFAHPPTEPWQQPVDAPG 174
Query: 178 --RVQKELSDWMN-WLKTEIGFDGWRFDFVKGYAPSITK----------------VYMEN 218
++ + D M WL + G DG+R D A S+ K +++
Sbjct: 175 PQATREAMKDIMRFWL--DKGADGFRVDM----ADSLVKNDPGNKETIKLWQEIRAWLDE 228
Query: 219 TSPDFAVGEKWDS--------------LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAA 264
P+ + +W + L +G +G ++ +
Sbjct: 229 EYPEAVLVSEWGNPEQSLKAGFDMDFLLHFGGNGYNSLFRNLNTDGGHR------RDNCY 282
Query: 265 FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDK 324
FD + KG ++ V L + + + GK G+I + N HD T RL +++
Sbjct: 283 FDASGKGDIKPFVDEYLPQYEATKGK--GYISLPTCN-------HD---TPRLNARLTEE 330
Query: 325 VM-LGYAYILTHPGTPCIFY 343
+ L +A++LT PG P I+Y
Sbjct: 331 ELKLAFAFLLTMPGVPFIYY 350
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The catalytic triad (DED) is not present here. The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 429 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 424 | |||
| PLN00196 | 428 | alpha-amylase; Provisional | 100.0 | |
| PLN02361 | 401 | alpha-amylase | 100.0 | |
| PLN02784 | 894 | alpha-amylase | 100.0 | |
| PRK10785 | 598 | maltodextrin glucosidase; Provisional | 100.0 | |
| PRK09441 | 479 | cytoplasmic alpha-amylase; Reviewed | 100.0 | |
| TIGR02456 | 539 | treS_nterm trehalose synthase. Trehalose synthase | 100.0 | |
| PRK09505 | 683 | malS alpha-amylase; Reviewed | 100.0 | |
| TIGR02403 | 543 | trehalose_treC alpha,alpha-phosphotrehalase. Treha | 100.0 | |
| PRK10933 | 551 | trehalose-6-phosphate hydrolase; Provisional | 100.0 | |
| PF00128 | 316 | Alpha-amylase: Alpha amylase, catalytic domain; In | 100.0 | |
| TIGR02402 | 542 | trehalose_TreZ malto-oligosyltrehalose trehalohydr | 100.0 | |
| PRK12313 | 633 | glycogen branching enzyme; Provisional | 100.0 | |
| TIGR01515 | 613 | branching_enzym alpha-1,4-glucan:alpha-1,4-glucan | 100.0 | |
| TIGR02104 | 605 | pulA_typeI pullulanase, type I. Pullulan is an unu | 100.0 | |
| PRK14706 | 639 | glycogen branching enzyme; Provisional | 100.0 | |
| PRK05402 | 726 | glycogen branching enzyme; Provisional | 100.0 | |
| TIGR02100 | 688 | glgX_debranch glycogen debranching enzyme GlgX. Th | 100.0 | |
| TIGR03852 | 470 | sucrose_gtfA sucrose phosphorylase. In the forward | 100.0 | |
| PRK03705 | 658 | glycogen debranching enzyme; Provisional | 100.0 | |
| PRK13840 | 495 | sucrose phosphorylase; Provisional | 100.0 | |
| PRK12568 | 730 | glycogen branching enzyme; Provisional | 100.0 | |
| PRK14510 | 1221 | putative bifunctional 4-alpha-glucanotransferase/g | 100.0 | |
| PRK14705 | 1224 | glycogen branching enzyme; Provisional | 100.0 | |
| PLN02960 | 897 | alpha-amylase | 100.0 | |
| TIGR02102 | 1111 | pullulan_Gpos pullulanase, extracellular, Gram-pos | 100.0 | |
| PLN02447 | 758 | 1,4-alpha-glucan-branching enzyme | 100.0 | |
| COG0366 | 505 | AmyA Glycosidases [Carbohydrate transport and meta | 100.0 | |
| KOG0471 | 545 | consensus Alpha-amylase [Carbohydrate transport an | 100.0 | |
| TIGR02455 | 688 | TreS_stutzeri trehalose synthase, Pseudomonas stut | 100.0 | |
| TIGR02103 | 898 | pullul_strch alpha-1,6-glucosidases, pullulanase-t | 100.0 | |
| COG0296 | 628 | GlgB 1,4-alpha-glucan branching enzyme [Carbohydra | 100.0 | |
| PLN02877 | 970 | alpha-amylase/limit dextrinase | 100.0 | |
| TIGR02401 | 825 | trehalose_TreY malto-oligosyltrehalose synthase. T | 100.0 | |
| COG1523 | 697 | PulA Type II secretory pathway, pullulanase PulA a | 100.0 | |
| KOG2212 | 504 | consensus Alpha-amylase [Carbohydrate transport an | 100.0 | |
| PLN03244 | 872 | alpha-amylase; Provisional | 99.97 | |
| KOG0470 | 757 | consensus 1,4-alpha-glucan branching enzyme/starch | 99.97 | |
| PRK14511 | 879 | maltooligosyl trehalose synthase; Provisional | 99.97 | |
| smart00642 | 166 | Aamy Alpha-amylase domain. | 99.94 | |
| PRK14507 | 1693 | putative bifunctional 4-alpha-glucanotransferase/m | 99.86 | |
| TIGR01531 | 1464 | glyc_debranch glycogen debranching enzymye. glycog | 99.83 | |
| COG3280 | 889 | TreY Maltooligosyl trehalose synthase [Carbohydrat | 99.8 | |
| PF14701 | 423 | hDGE_amylase: glucanotransferase domain of human g | 99.31 | |
| PF14872 | 811 | GHL5: Hypothetical glycoside hydrolase 5 | 99.18 | |
| KOG3625 | 1521 | consensus Alpha amylase [Carbohydrate transport an | 99.0 | |
| PF02324 | 809 | Glyco_hydro_70: Glycosyl hydrolase family 70; Inte | 98.88 | |
| PF02324 | 809 | Glyco_hydro_70: Glycosyl hydrolase family 70; Inte | 98.7 | |
| PF14871 | 132 | GHL6: Hypothetical glycosyl hydrolase 6 | 98.57 | |
| PF02638 | 311 | DUF187: Glycosyl hydrolase like GH101; InterPro: I | 98.49 | |
| smart00810 | 61 | Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet | 98.34 | |
| PRK14508 | 497 | 4-alpha-glucanotransferase; Provisional | 98.27 | |
| PLN02635 | 538 | disproportionating enzyme | 98.12 | |
| PF07821 | 59 | Alpha-amyl_C2: Alpha-amylase C-terminal beta-sheet | 97.84 | |
| COG1649 | 418 | Uncharacterized protein conserved in bacteria [Fun | 97.84 | |
| cd06593 | 308 | GH31_xylosidase_YicI YicI alpha-xylosidase is a gl | 97.76 | |
| PRK14510 | 1221 | putative bifunctional 4-alpha-glucanotransferase/g | 97.75 | |
| PF02446 | 496 | Glyco_hydro_77: 4-alpha-glucanotransferase; InterP | 97.71 | |
| PF11941 | 89 | DUF3459: Domain of unknown function (DUF3459); Int | 97.63 | |
| PF02065 | 394 | Melibiase: Melibiase; InterPro: IPR000111 O-Glycos | 97.5 | |
| cd06592 | 303 | GH31_glucosidase_KIAA1161 KIAA1161 is an uncharact | 97.43 | |
| TIGR00217 | 513 | malQ 4-alpha-glucanotransferase. This enzyme is kn | 97.28 | |
| PRK09936 | 296 | hypothetical protein; Provisional | 97.25 | |
| PF13200 | 316 | DUF4015: Putative glycosyl hydrolase domain | 97.18 | |
| cd06597 | 340 | GH31_transferase_CtsY CtsY (cyclic tetrasaccharide | 97.01 | |
| PF13199 | 559 | Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: | 96.84 | |
| PF14488 | 166 | DUF4434: Domain of unknown function (DUF4434) | 96.83 | |
| PRK10426 | 635 | alpha-glucosidase; Provisional | 96.73 | |
| cd06594 | 317 | GH31_glucosidase_YihQ YihQ is a bacterial alpha-gl | 96.72 | |
| cd06599 | 317 | GH31_glycosidase_Aec37 Glycosyl hydrolase family 3 | 96.71 | |
| cd06591 | 319 | GH31_xylosidase_XylS XylS is a glycosyl hydrolase | 96.27 | |
| PRK14582 | 671 | pgaB outer membrane N-deacetylase; Provisional | 96.07 | |
| cd06600 | 317 | GH31_MGAM-like This family includes the following | 96.04 | |
| PRK10658 | 665 | putative alpha-glucosidase; Provisional | 96.0 | |
| cd06598 | 317 | GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide | 95.97 | |
| PRK11052 | 695 | malQ 4-alpha-glucanotransferase; Provisional | 95.75 | |
| cd06602 | 339 | GH31_MGAM_SI_GAA This family includes the followin | 95.62 | |
| PF05913 | 357 | DUF871: Bacterial protein of unknown function (DUF | 95.45 | |
| PLN03236 | 745 | 4-alpha-glucanotransferase; Provisional | 95.37 | |
| cd06604 | 339 | GH31_glucosidase_II_MalA Alpha-glucosidase II (alp | 95.25 | |
| PF00150 | 281 | Cellulase: Cellulase (glycosyl hydrolase family 5) | 95.1 | |
| COG3589 | 360 | Uncharacterized conserved protein [Function unknow | 95.08 | |
| COG1501 | 772 | Alpha-glucosidases, family 31 of glycosyl hydrolas | 95.03 | |
| PLN02950 | 909 | 4-alpha-glucanotransferase | 95.01 | |
| PF01055 | 441 | Glyco_hydro_31: Glycosyl hydrolases family 31 ; In | 94.97 | |
| cd06542 | 255 | GH18_EndoS-like Endo-beta-N-acetylglucosaminidases | 94.74 | |
| KOG1065 | 805 | consensus Maltase glucoamylase and related hydrola | 94.63 | |
| PRK11052 | 695 | malQ 4-alpha-glucanotransferase; Provisional | 94.2 | |
| cd06595 | 292 | GH31_xylosidase_XylS-like This family represents a | 94.02 | |
| PF07745 | 332 | Glyco_hydro_53: Glycosyl hydrolase family 53; Inte | 93.51 | |
| cd06565 | 301 | GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) | 93.05 | |
| PF02449 | 374 | Glyco_hydro_42: Beta-galactosidase; InterPro: IPR0 | 92.7 | |
| cd06601 | 332 | GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) | 92.5 | |
| PLN02763 | 978 | hydrolase, hydrolyzing O-glycosyl compounds | 92.07 | |
| cd06589 | 265 | GH31 The enzymes of glycosyl hydrolase family 31 ( | 92.01 | |
| cd06603 | 339 | GH31_GANC_GANAB_alpha This family includes the clo | 91.88 | |
| COG1640 | 520 | MalQ 4-alpha-glucanotransferase [Carbohydrate tran | 91.71 | |
| cd02875 | 358 | GH18_chitobiase Chitobiase (also known as di-N-ace | 91.44 | |
| smart00632 | 81 | Aamy_C Aamy_C domain. | 91.23 | |
| COG3867 | 403 | Arabinogalactan endo-1,4-beta-galactosidase [Carbo | 91.19 | |
| cd02871 | 312 | GH18_chitinase_D-like GH18 domain of Chitinase D ( | 91.11 | |
| cd06545 | 253 | GH18_3CO4_chitinase The Bacteroides thetaiotaomicr | 91.04 | |
| TIGR01370 | 315 | cysRS possible cysteinyl-tRNA synthetase, Methanoc | 90.71 | |
| cd06562 | 348 | GH20_HexA_HexB-like Beta-N-acetylhexosaminidases c | 90.65 | |
| cd06570 | 311 | GH20_chitobiase-like_1 A functionally uncharacteri | 90.57 | |
| PLN03059 | 840 | beta-galactosidase; Provisional | 90.38 | |
| PRK14507 | 1693 | putative bifunctional 4-alpha-glucanotransferase/m | 89.82 | |
| COG2342 | 300 | Predicted extracellular endo alpha-1,4 polygalacto | 89.71 | |
| PF01301 | 319 | Glyco_hydro_35: Glycosyl hydrolases family 35; Int | 89.1 | |
| PF03198 | 314 | Glyco_hydro_72: Glucanosyltransferase; InterPro: I | 88.89 | |
| PF10566 | 273 | Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: | 88.87 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 88.58 | |
| cd02742 | 303 | GH20_hexosaminidase Beta-N-acetylhexosaminidases o | 88.16 | |
| TIGR03356 | 427 | BGL beta-galactosidase. | 87.94 | |
| PLN03236 | 745 | 4-alpha-glucanotransferase; Provisional | 87.93 | |
| smart00812 | 384 | Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydro | 87.69 | |
| cd06564 | 326 | GH20_DspB_LnbB-like Glycosyl hydrolase family 20 ( | 87.63 | |
| cd06569 | 445 | GH20_Sm-chitobiase-like The chitobiase of Serratia | 86.03 | |
| PF13204 | 289 | DUF4038: Protein of unknown function (DUF4038); PD | 85.63 | |
| PRK15452 | 443 | putative protease; Provisional | 85.0 | |
| PF01120 | 346 | Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR00 | 84.43 | |
| PLN02950 | 909 | 4-alpha-glucanotransferase | 84.26 | |
| PF02679 | 244 | ComA: (2R)-phospho-3-sulfolactate synthase (ComA); | 84.08 | |
| COG3280 | 889 | TreY Maltooligosyl trehalose synthase [Carbohydrat | 84.02 | |
| cd06568 | 329 | GH20_SpHex_like A subgroup of the Glycosyl hydrola | 83.8 | |
| PF02806 | 95 | Alpha-amylase_C: Alpha amylase, C-terminal all-bet | 83.64 | |
| PF11852 | 168 | DUF3372: Domain of unknown function (DUF3372); Int | 82.91 | |
| PF14883 | 294 | GHL13: Hypothetical glycosyl hydrolase family 13 | 82.89 | |
| cd06563 | 357 | GH20_chitobiase-like The chitobiase of Serratia ma | 81.16 | |
| PF01373 | 402 | Glyco_hydro_14: Glycosyl hydrolase family 14; Inte | 80.66 |
| >PLN00196 alpha-amylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-81 Score=620.65 Aligned_cols=415 Identities=64% Similarity=1.204 Sum_probs=368.2
Q ss_pred hhHhhhhccCCCCCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCC
Q 014447 9 FLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG 88 (424)
Q Consensus 9 ~~~~~~~~~p~~~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G 88 (424)
+++.+++..|..+.++||+|.|+|+++...||++++|+++|+|||+||||+|||+|++++.++|||++.||+++|+++||
T Consensus 10 ~~~~~~~~~~~~~~~~v~~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fG 89 (428)
T PLN00196 10 LLLVLLGLSSNLAAGQVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYG 89 (428)
T ss_pred HHHHHhccCcccCCCCEEEEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCC
Confidence 34444455677778899999999999888899999999999999999999999999999999999999999999933999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP 168 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (424)
|++||++||++||++|||||+|+|+||++.++....+.|..|+++.+.++.+|+.+..+.+...|.++.+++..+.++.+
T Consensus 90 t~~elk~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (428)
T PLN00196 90 NEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAA 169 (428)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCC
Confidence 99999999999999999999999999999888765666877887777777888876666655567666777788889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEeeecCCCCCCCCCCCCCCCCCch
Q 014447 169 APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHR 248 (424)
Q Consensus 169 ~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~v~E~~~~~~~~~~~~~~~~~~~~~ 248 (424)
+||||++||+|+++|+++++||++++||||||+|+|++++.+|++.++++.+|.|+|||+|.+.+|.+.++..|.++.++
T Consensus 170 lpDLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~~~~f~~~~v~~~~p~f~VGE~W~~~~~~~~~~~~~~~~~~r 249 (428)
T PLN00196 170 APDIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEYDQNAHR 249 (428)
T ss_pred CCccCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhCCHHHHHHHHHccCCcEEEEEEeccccccccCCccccchhhH
Confidence 99999999999999999999998889999999999999999999999998899999999998877666677888877778
Q ss_pred hHHHHHHHhcCCc---eeeecccchHHHHHHhcchhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhH
Q 014447 249 GALKDWVQAAGGA---VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKV 325 (424)
Q Consensus 249 ~~~~~~~~~~~~~---~~~~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~ 325 (424)
+.+..|++..++. .+.|||+....+..++.++.+++.+.....+++....|..+|+|++|||++|..+....+.++.
T Consensus 250 ~~l~~~l~~~g~~~~~~~~fDF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~~~~~~~~~~ 329 (428)
T PLN00196 250 QELVNWVDRVGGAASPATVFDFTTKGILNVAVEGELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQHMWPFPSDKV 329 (428)
T ss_pred HHHHHHHHhcCCccCcceeecccchHHHHHHhcCCchhhhhhcccCcchhhcChhhceeeccCCCCccccccCCCccchH
Confidence 8999999976543 4589999987666677666777777655555666677889999999999999988877677788
Q ss_pred HHHHHHHHcCCCeeEEecCCCCCcchHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEECCEEEEEECCCCCCCCcC
Q 014447 326 MLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLI 405 (424)
Q Consensus 326 ~~a~a~~l~~pG~P~iyyG~~~~w~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r~~~~lv~ln~~~~~~~~~ 405 (424)
++|+|++||+||+|+||||+.++|++.+.|++|+++||++++++.|.++.+..++++++++|+++++|+||...+.+.+.
T Consensus 330 ~lAyA~iLT~pG~P~IyYg~~~~~~~~~~i~~Li~~Rk~~~~~~~g~~~~~~a~~d~yv~~~~~~~~~~i~~~~~~~~~~ 409 (428)
T PLN00196 330 MQGYAYILTHPGNPCIFYDHFFDWGLKEEIAALVSIRNRNGITPTSELRIMEADADLYLAEIDGKVIVKIGSRYDVSHLI 409 (428)
T ss_pred HHHHHHHHcCCCcceEeeCCCcCccHHHHHHHHHHHHHhCCCcCCccEEEEEecCCEEEEEECCEEEEEECCCCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCcEEEEec
Q 014447 406 PSDFKVAADGTDYAVWEK 423 (424)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~ 423 (424)
|.+|+++++|.+|+||++
T Consensus 410 ~~~~~~~~~g~~~~~w~~ 427 (428)
T PLN00196 410 PEGFQVVAHGNGYAVWEK 427 (428)
T ss_pred cccceEEEecCCeEEEec
Confidence 999999999999999975
|
|
| >PLN02361 alpha-amylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-74 Score=562.95 Aligned_cols=387 Identities=49% Similarity=0.981 Sum_probs=336.1
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHH
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH 101 (424)
+++||+|.|+|++.. ...+++|+++|+||++||||+|||+|++++.++|||++.||+++| ++|||++||++||++||
T Consensus 10 ~~~v~lQ~F~W~~~~--~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~-~~~Gt~~el~~li~~~h 86 (401)
T PLN02361 10 GREILLQAFNWESHK--HDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLN-SAYGSEHLLKSLLRKMK 86 (401)
T ss_pred CCcEEEEEEeccCCc--cHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccC-cccCCHHHHHHHHHHHH
Confidence 578999999999874 358999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 014447 102 QKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQK 181 (424)
Q Consensus 102 ~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~ 181 (424)
++||+||+|+|+||++...+...+.|..|.+. +.+|.....+.+. .+.++...+..+.++||||++||+||+
T Consensus 87 ~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~----~~~wd~~~~~~~~----~g~~~~~~~~~~~~lpDLd~~np~Vr~ 158 (401)
T PLN02361 87 QYNVRAMADIVINHRVGTTQGHGGMYNRYDGI----PLPWDEHAVTSCT----GGLGNRSTGDNFNGVPNIDHTQHFVRK 158 (401)
T ss_pred HcCCEEEEEEccccccCCCCCCCCCcccCCCC----cCCCCcccccccc----CCCCCccCCCCCccCCccCCCCHHHHH
Confidence 99999999999999976555444555444321 1245433222111 122344556678899999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEeeecCCCCCCC-CCCCCCCCCCchhHHHHHHHhcCC
Q 014447 182 ELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGP-DGKPDANQDGHRGALKDWVQAAGG 260 (424)
Q Consensus 182 ~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~v~E~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 260 (424)
+++++++||++++||||||+|+|++++.+||++++++.+|.|+|||+|.+..+.. ++.++|+++.+++.+..|+...++
T Consensus 159 ~l~~~~~wl~~~~GiDGfRlDavk~~~~~f~~~~~~~~~p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~ 238 (401)
T PLN02361 159 DIIGWLIWLRNDVGFQDFRFDFAKGYSAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGG 238 (401)
T ss_pred HHHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHhhCCeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCC
Confidence 9999999888889999999999999999999999998889999999998755432 556889888889999999998878
Q ss_pred ceeeecccchHHHHHHhcchhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeE
Q 014447 261 AVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPC 340 (424)
Q Consensus 261 ~~~~~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~ 340 (424)
..++|||+++..+.+++.++.+++.+...+.+.+.+..|..+|+|++|||++|.++....+.++.++|+|++||+||+|+
T Consensus 239 ~~~~fDF~l~~~l~~a~~~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~~~~~~~~~~~AyA~iLT~pG~P~ 318 (401)
T PLN02361 239 LSAAFDFTTKGILQEAVKGQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFPSDHIMEGYAYILTHPGIPT 318 (401)
T ss_pred cceeecHHHHHHHHHHHhhhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhhccCCchHHHHHHHHHHHCCCCcCe
Confidence 89999999999999999777888888777667777778899999999999999988877777889999999999999999
Q ss_pred EecCCCCCcc--hHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEECCEEEEEECCCCCCCCcCCC--CcEEEEeCC
Q 014447 341 IFYDHFFDWG--LKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPS--DFKVAADGT 416 (424)
Q Consensus 341 iyyG~~~~w~--l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r~~~~lv~ln~~~~~~~~~~~--~~~~~~~~~ 416 (424)
||||+.++|+ +.+.|++|+.+||++++++.|.++++..++++++...+++++|-++. +.+.|. +|+++++|.
T Consensus 319 Vyyg~~~~~~~~~~~~I~~Li~lRk~~~~~~~s~~~i~~a~~~~y~a~i~~~~~~k~g~----~~~~p~~~~~~~~~~g~ 394 (401)
T PLN02361 319 VFYDHFYDWGGSIHDQIVKLIDIRKRQDIHSRSSIRILEAQSNLYSAIIDEKLCMKIGD----GSWCPSGREWTLATSGH 394 (401)
T ss_pred EeeccccCCChHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCeEEEEECCeEEEEecC----CCCCCCCCCceEEEecC
Confidence 9999999995 99999999999999999999999999999999999999999999998 455554 599999999
Q ss_pred cEEEEec
Q 014447 417 DYAVWEK 423 (424)
Q Consensus 417 ~~~~~~~ 423 (424)
+|+||++
T Consensus 395 ~~~~w~~ 401 (401)
T PLN02361 395 RYAVWHK 401 (401)
T ss_pred ceEEeeC
Confidence 9999985
|
|
| >PLN02784 alpha-amylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-69 Score=547.81 Aligned_cols=392 Identities=50% Similarity=0.953 Sum_probs=341.9
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHH
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH 101 (424)
+.+||+|.|+|++..+ +..+++|+++|+||++||||+|||+|++++..++||++.|||++| ++|||.+||++||++||
T Consensus 501 ~~eVmlQgF~Wds~~d-g~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~ld-s~yGT~~ELk~LI~a~H 578 (894)
T PLN02784 501 GFEILCQGFNWESHKS-GRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLN-SRYGTIDELKDLVKSFH 578 (894)
T ss_pred CceEEEEeEEcCcCCC-CchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccC-cCcCCHHHHHHHHHHHH
Confidence 5589999999999987 456999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 014447 102 QKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQK 181 (424)
Q Consensus 102 ~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~ 181 (424)
++||+||+|+|+||++..+....+.|.+|.+ ..+|.+...+.+...|. +.++...+..+..+||||++||+||+
T Consensus 579 ~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g-----~~dW~d~~i~~ddp~F~-GrG~~~sgddf~~lPDLDh~npeVR~ 652 (894)
T PLN02784 579 EVGIKVLGDAVLNHRCAHFQNQNGVWNIFGG-----RLNWDDRAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRK 652 (894)
T ss_pred HCCCEEEEEECcccccccccCCCCcccccCC-----eecCCCCcccCCCcccC-CcCCcCcccccCcCCcCCCCCHHHHH
Confidence 9999999999999998765444445555543 34566554444444454 45566667788999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCc
Q 014447 182 ELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGA 261 (424)
Q Consensus 182 ~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (424)
+++++++||++++||||||+|+|++++..|+++++++.+|.|+|||.|.+.+|. .+.++|+++.+++.+..|++..++.
T Consensus 653 eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkeyv~a~kp~F~VGEyWd~~~~~-~g~~~Ynqd~~rq~l~dwi~~tgg~ 731 (894)
T PLN02784 653 DLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDYMEASEPYFAVGEYWDSLSYT-YGEMDYNQDAHRQRIVDWINATNGT 731 (894)
T ss_pred HHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHHHhccCCcEEEEEeccccccc-cCccccCchhHHHHHHHHHHhCCCc
Confidence 999999999988999999999999999999999999999999999999876554 4688999999999999999998888
Q ss_pred eeeecccchHHHHHHhc-chhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeE
Q 014447 262 VAAFDFTTKGILQAAVQ-GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPC 340 (424)
Q Consensus 262 ~~~~df~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~ 340 (424)
.++|||+++..+..++. ++.+++.+..+..+++.++.|..+|+|++|||+++.++...++..+..+|||++||.||+||
T Consensus 732 ~saFDfplk~~L~~A~~~~e~wrL~d~~g~~~glv~~~P~~AVTFVDNHDTg~~Q~~w~~p~~k~~~AYAyILthpG~Pc 811 (894)
T PLN02784 732 AGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEGKEMQGYAYILTHPGTPA 811 (894)
T ss_pred eeeechhHHHHHHHHHhccchhhhhhccCCCCCeeccccCceEEEecCCCCCCCcccCCCCccchhhHHHHHHcCCCcce
Confidence 99999999999999985 57889988887778889999999999999999999877666666788889999999999999
Q ss_pred EecCCCCCcchHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEECCEEEEEECCCCCCCCcCCCCcEEEEeCCcEEE
Q 014447 341 IFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAV 420 (424)
Q Consensus 341 iyyG~~~~w~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r~~~~lv~ln~~~~~~~~~~~~~~~~~~~~~~~~ 420 (424)
||||+.+ |.+.+.|++|+.+|+..-.-.+...+++..+.++|+...+++++|.|+...-.+.-.+.+|+++++|.+|+|
T Consensus 812 VFy~h~y-~~~~~~I~~Li~iRk~~gI~~~S~v~i~~a~~~~Y~a~i~~k~~~kiG~~~~~p~~~~~~~~~~~sG~~yav 890 (894)
T PLN02784 812 VFYDHIF-SHYHPEIASLISLRNRQKIHCRSEVKITKAERDVYAAIIDEKVAMKIGPGHYEPPNGPQNWSVALEGQDYKV 890 (894)
T ss_pred EEehhhh-hhhHHHHHHHHHHHHHcCCCCCCceeEEEecCCcEEEEeCCeeEEEECCcccCCCCCCCceEEEEecCCeEE
Confidence 9999988 567888999999999988888888999999999999999999999999842221112236999999999999
Q ss_pred Eec
Q 014447 421 WEK 423 (424)
Q Consensus 421 ~~~ 423 (424)
|++
T Consensus 891 W~k 893 (894)
T PLN02784 891 WET 893 (894)
T ss_pred EeC
Confidence 986
|
|
| >PRK10785 maltodextrin glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-65 Score=526.79 Aligned_cols=353 Identities=20% Similarity=0.336 Sum_probs=258.4
Q ss_pred hccCCCCCCceEEEeecCCCCC---------------------------------------CCCCcHHHHHhhhhHHHHc
Q 014447 15 AIFLPFTSPALLFQGFNWESSN---------------------------------------KAGGWYNSLKNSIPDLSNA 55 (424)
Q Consensus 15 ~~~p~~~~~~v~~~~f~~ds~~---------------------------------------~~~G~~~gi~~~L~ylk~l 55 (424)
...|.|++++|+||+|+ |.+. -.||||+||++||||||+|
T Consensus 113 ~~~P~W~~~~v~YqIfp-DRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~kLdYL~~L 191 (598)
T PRK10785 113 DQGPQWVADQVFYQIFP-DRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKL 191 (598)
T ss_pred CCCCchhhcCEEEEech-hhhcCCCcccCccCCceeeccCCCcccccCcCCCcccccccccccCcCHHHHHHHHHHHHHc
Confidence 35699999999999994 2211 0279999999999999999
Q ss_pred CCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceee-cCCCC
Q 014447 56 GITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCI-FEGGT 134 (424)
Q Consensus 56 Gv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~-~~~~~ 134 (424)
|||+|||+||++++++|||++.||++|| |+|||++||++||++||++|||||||+|+||||.+|+ |+. ...+.
T Consensus 192 Gv~~I~L~Pif~s~s~hgYd~~Dy~~iD-p~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~-----~f~~~~~~~ 265 (598)
T PRK10785 192 GVTALYLNPIFTAPSVHKYDTEDYRHVD-PQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHP-----WFDRHNRGT 265 (598)
T ss_pred CCCEEEeCCcccCCCCCCcCcccccccC-cccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCH-----HHHHhhccc
Confidence 9999999999999999999999999999 9999999999999999999999999999999999885 211 00000
Q ss_pred -------CCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH----HHHHHHHh-cCCCeEEec
Q 014447 135 -------SDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSD----WMNWLKTE-IGFDGWRFD 202 (424)
Q Consensus 135 -------~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~----~~~~w~~~-~gvDGfR~D 202 (424)
.....+|+.. . ..+.+..+.....+|+||++||+|+++|++ ++++|+++ +||||||+|
T Consensus 266 ~ga~~~~~spy~dwf~~---~-------~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlD 335 (598)
T PRK10785 266 GGACHHPDSPWRDWYSF---S-------DDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLD 335 (598)
T ss_pred cccccCCCCCcceeeEE---C-------CCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEe
Confidence 1111233211 1 112333445568899999999999999995 79999986 899999999
Q ss_pred ccCCCC--------HHHHHHH---HHhcCC-CeEEeeecCCCC-CCC----CCCCCCCCCCchhHHHHHHHhcCCceeee
Q 014447 203 FVKGYA--------PSITKVY---MENTSP-DFAVGEKWDSLS-YGP----DGKPDANQDGHRGALKDWVQAAGGAVAAF 265 (424)
Q Consensus 203 ~a~~~~--------~~~~~~~---~~~~~p-~~~v~E~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (424)
+|++++ .+||+++ +++.+| .+++||+|.+.. +.+ ++.++|. .+...+..++.... +
T Consensus 336 va~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~~~l~~~~~d~~mny~--~f~~~~~~~~~~~~-----~ 408 (598)
T PRK10785 336 VVHMLGEGGGARNNLQHVAGITQAAKEENPEAYVLGEHFGDARQWLQADVEDAAMNYR--GFAFPLRAFLANTD-----I 408 (598)
T ss_pred cHhHhccccCccccHHHHHHHHHHHHhhCCCeEEEEeccCChhhhccCccccccccch--hhhhHHHHHhhccc-----c
Confidence 999884 5799988 555677 789999997532 211 2222221 12223333332110 0
Q ss_pred cccc-hHHHHHHhcchhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecC
Q 014447 266 DFTT-KGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYD 344 (424)
Q Consensus 266 df~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG 344 (424)
.+.. ..... .+...+...... .+.. .....++|++|||++|+.+.++.+.+++++|++++||+||+|+||||
T Consensus 409 ~~~~~~~~~~-~~~~~l~~~~~~---~~~~---~~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ll~t~pGiP~IYYG 481 (598)
T PRK10785 409 AYHPQQIDAQ-TCAAWMDEYRAG---LPHQ---QQLRQFNQLDSHDTARFKTLLGGDKARMPLALVWLFTWPGVPCIYYG 481 (598)
T ss_pred ccCccCCCHH-HHHHHHHHHHHh---CCHH---HHHHhhhccCCCccchhhhhhCCCHHHHHHHHHHHHhCCCCcEEEee
Confidence 0000 00000 000000011110 0100 00124689999999999888765677899999999999999999999
Q ss_pred CC--------------CCc-------chHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEE---CCEEEEEECCC
Q 014447 345 HF--------------FDW-------GLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAI---GDRVIMKIGPK 398 (424)
Q Consensus 345 ~~--------------~~w-------~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r---~~~~lv~ln~~ 398 (424)
|| |+| +++++||+|++|||++|+|+.|.+..+..++++++|.| +++++|++|++
T Consensus 482 dE~G~~g~~dp~~R~~m~W~~~~~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~~~~v~af~R~~~~~~vlVviN~s 559 (598)
T PRK10785 482 DEVGLDGGNDPFCRKPFPWDEAKQDGALLALYQRMIALRKKSQALRRGGCQVLYAEGNVVVFARVLQQQRVLVAINRG 559 (598)
T ss_pred eeccccCCCCCCccCCcCCCcccCchHHHHHHHHHHHHHhhCcccccCcEEEEEeCCCEEEEEEECCCCEEEEEEECC
Confidence 86 456 48999999999999999999999999988899999999 67999999986
|
|
| >PRK09441 cytoplasmic alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=496.69 Aligned_cols=355 Identities=28% Similarity=0.466 Sum_probs=262.1
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC---CCCCCccccc---------CCCCCCCCC
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---PQGYMPGRLY---------DLDASKYGS 89 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~---~~gY~~~d~~---------~id~~~~Gt 89 (424)
+..||+|.|.|++.. ++.++++|++|||||++||||+|||+||+++++ +|||++.||+ .|| |+|||
T Consensus 2 ~~~~~~q~f~w~~~~-~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id-~~fGt 79 (479)
T PRK09441 2 RNGTMMQYFEWYLPN-DGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVR-TKYGT 79 (479)
T ss_pred CCceEEEEEEeccCC-CccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcC-cCcCC
Confidence 568999999999884 355678999999999999999999999999874 6999999999 799 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCC---------C------------cceeecCCC-C--CCCCCCCCCcc
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDG---------R------------GIYCIFEGG-T--SDDRLDWGPSF 145 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~---------~------------~~~~~~~~~-~--~~~~~~w~~~~ 145 (424)
++|||+||++||++|||||+|+|+||++.++..+ + ..|.+|... . +.....|.-+.
T Consensus 80 ~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (479)
T PRK09441 80 KEELLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYH 159 (479)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcC
Confidence 9999999999999999999999999999643200 0 001111100 0 00000010000
Q ss_pred cccCC-----------------CccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC
Q 014447 146 ICRGD-----------------KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 208 (424)
Q Consensus 146 ~~~~~-----------------~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~ 208 (424)
.+... ..|.+........+.+..+||||++||+|+++|++++++|++++||||||+|+|++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~ 239 (479)
T PRK09441 160 FSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHID 239 (479)
T ss_pred CCCcccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC
Confidence 00000 0011000011122344679999999999999999999999998999999999999999
Q ss_pred HHHHHHHHHhc---C-C-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc-hhh
Q 014447 209 PSITKVYMENT---S-P-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELW 282 (424)
Q Consensus 209 ~~~~~~~~~~~---~-p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~-~~~ 282 (424)
.+||+++.++. . | .+++||+|.+. .+.+..|+...+...++|||++...+..++.+ ...
T Consensus 240 ~~f~~~~~~~~~~~~~~~~~~vGE~~~~~---------------~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~~~~~ 304 (479)
T PRK09441 240 AWFIKEWIEHVREVAGKDLFIVGEYWSHD---------------VDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQGRDY 304 (479)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeecCCC---------------hHHHHHHHHhcCCCceEecHHHHHHHHHHHhcCCcc
Confidence 99999996552 2 4 78999999642 35667788755456678999998888887743 222
Q ss_pred hhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCc-hhHHHHHHHHHcCC-CeeEEecCCCCCcc-------hHH
Q 014447 283 RLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS-DKVMLGYAYILTHP-GTPCIFYDHFFDWG-------LKE 353 (424)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~-~~~~~a~a~~l~~p-G~P~iyyG~~~~w~-------l~~ 353 (424)
.+...... ......+..+++|++|||++|+.+...... ...++|++++||+| |+|+||||+|+++. +++
T Consensus 305 ~l~~~~~~--~~~~~~~~~~~~FldNHD~~R~~~~~~~~~~~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~~~~~~l~~ 382 (479)
T PRK09441 305 DMRNIFDG--TLVEADPFHAVTFVDNHDTQPGQALESPVEPWFKPLAYALILLREEGYPCVFYGDYYGASGYYIDMPFKE 382 (479)
T ss_pred chHhhhCc--chhhcCcccceeeeccccCCCcccccccccccchHHHHHHHHhCCCCceeeEeccccCCCCCcccchHHH
Confidence 33222211 111123556789999999999987654222 23689999999999 99999999999874 899
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEEC-----CEEEEEECCC
Q 014447 354 AISKLAAVRNRNGINTASRVNILASDADVYIAAIG-----DRVIMKIGPK 398 (424)
Q Consensus 354 ~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r~-----~~~lv~ln~~ 398 (424)
+|++|+++||++ +.|....+..++++++|.|. +.++|++||.
T Consensus 383 ~i~~Li~lRk~~---~~G~~~~~~~~~~~~~~~R~~~~~~~~vvvvinn~ 429 (479)
T PRK09441 383 KLDKLLLARKNF---AYGEQTDYFDHPNCIGWTRSGDEENPGLAVVISNG 429 (479)
T ss_pred HHHHHHHHHHHh---CCCCeeEeecCCCEEEEEEecCCCCccEEEEEECC
Confidence 999999999995 37888888888999999992 3588888875
|
|
| >TIGR02456 treS_nterm trehalose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=497.42 Aligned_cols=360 Identities=19% Similarity=0.285 Sum_probs=264.7
Q ss_pred CCCCCceEEEeec---CCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccccCCCCCCCCCHHHHH
Q 014447 19 PFTSPALLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQADLK 94 (424)
Q Consensus 19 ~~~~~~v~~~~f~---~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~edl~ 94 (424)
+|+++.|+||+|. .|+.++++|||+||+++|||||+||||+|||+||++++. +|||++.||++|| |+|||++||+
T Consensus 1 ~W~~~~viYqi~~~~f~d~~~~~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd-~~~Gt~~df~ 79 (539)
T TIGR02456 1 LWYKDAVFYEVHVRSFFDSNGDGIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAIL-PEFGTIDDFK 79 (539)
T ss_pred CccccceEEEEehhHhhcCCCCCccCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccC-hhhCCHHHHH
Confidence 5999999999995 244556789999999999999999999999999999986 7999999999999 9999999999
Q ss_pred HHHHHHHHcCCEEEEeeecccCCCCCCC----------CCcceeecCCCCCCCCCCCCCccccc--CCCccCCCCCCCCC
Q 014447 95 SLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTSDDRLDWGPSFICR--GDKEYSDGQGNDDT 162 (424)
Q Consensus 95 ~Lv~~aH~~Gi~VilD~v~NH~~~~~~~----------~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~~ 162 (424)
+||++||++||+||+|+|+||+|.+|+. +..+|+.+.+... ...++...+... ..+.+....+.++.
T Consensus 80 ~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~y~ 158 (539)
T TIGR02456 80 DFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDE-KYKDTRIIFVDTEKSNWTFDPVAKQYYW 158 (539)
T ss_pred HHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCc-ccccccccccccCCCCccccCCcCeeEE
Confidence 9999999999999999999999998851 1234444433110 001110000000 11112223344455
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC-------------CHHHHHHH---HHhcCC-CeEE
Q 014447 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY-------------APSITKVY---MENTSP-DFAV 225 (424)
Q Consensus 163 ~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~-------------~~~~~~~~---~~~~~p-~~~v 225 (424)
..+.+.+||||++||+||++|++++++|++ +||||||||+++++ ..+||+++ +++.+| ++++
T Consensus 159 ~~f~~~~pdln~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p~~~~i 237 (539)
T TIGR02456 159 HRFFSHQPDLNYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYPGRMLL 237 (539)
T ss_pred ecccCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCCCeEEE
Confidence 567789999999999999999999999998 99999999999876 24799888 444567 7799
Q ss_pred eeecCCCCCCCCCCCCCCCCCchhHHHHHHHh-cC-CceeeecccchHHHHHHh-cchhhhhhhhcCCCCCCcCcCCCcc
Q 014447 226 GEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AG-GAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNA 302 (424)
Q Consensus 226 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~df~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (424)
||++.. ...+..|... .. ++++.|+|++...+...+ .++...+........... .+...
T Consensus 238 aE~~~~----------------~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l~~~l~~~~~~~--~~~~~ 299 (539)
T TIGR02456 238 AEANQW----------------PEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRREDRSPIIDILKETPDIP--DSCQW 299 (539)
T ss_pred EEeCCC----------------HHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccCCHHHHHHHHHHhhhcc--CCCce
Confidence 998531 3445566543 12 578889998865544332 232222222111111111 12345
Q ss_pred eecccCCCCCc-------------------------------CcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC----
Q 014447 303 VTFIDNHDTGS-------------------------------TQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF---- 347 (424)
Q Consensus 303 ~~f~~nHD~~r-------------------------------~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~---- 347 (424)
++|++|||+.| +.+..+.+.+++++|++++||+||+|+||||+|+
T Consensus 300 ~~fl~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~ 379 (539)
T TIGR02456 300 CIFLRNHDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIGMGD 379 (539)
T ss_pred eeecCCCCccCccccChhhhhhhhhhccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhcCcC
Confidence 77999999954 2233333445789999999999999999999864
Q ss_pred --------------Ccc-----------------------------------------hHHHHHHHHHHHHhcCCCCCCC
Q 014447 348 --------------DWG-----------------------------------------LKEAISKLAAVRNRNGINTASR 372 (424)
Q Consensus 348 --------------~w~-----------------------------------------l~~~~~~L~~lR~~~~al~~G~ 372 (424)
+|+ ++++||+|++||+++++|..|.
T Consensus 380 ~~~~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~~aL~~G~ 459 (539)
T TIGR02456 380 NIWLGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAFGRGS 459 (539)
T ss_pred CCccCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcCcccccCc
Confidence 341 6889999999999999999999
Q ss_pred eEEEec-CCCEEEEEE---CCEEEEEECCCC
Q 014447 373 VNILAS-DADVYIAAI---GDRVIMKIGPKM 399 (424)
Q Consensus 373 ~~~~~~-~~~v~~~~r---~~~~lv~ln~~~ 399 (424)
+..+.. ++++++|.| +++++|++|.+.
T Consensus 460 ~~~l~~~~~~v~~f~R~~~~~~vlVv~N~s~ 490 (539)
T TIGR02456 460 LTFLPTGNRRVLAFLREYEGERVLCVFNFSR 490 (539)
T ss_pred eEEEecCCCCEEEEEEEcCCcEEEEEEeCCC
Confidence 998876 457999998 678889998764
|
Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530). |
| >PRK09505 malS alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-61 Score=495.47 Aligned_cols=353 Identities=21% Similarity=0.295 Sum_probs=255.0
Q ss_pred hccCCCCCCceEEEeecCCCCC--------------C--------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC---
Q 014447 15 AIFLPFTSPALLFQGFNWESSN--------------K--------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--- 69 (424)
Q Consensus 15 ~~~p~~~~~~v~~~~f~~ds~~--------------~--------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--- 69 (424)
...|.|+++.|+||+|. |.+. + +||||+||+++|+|||+|||++|||+||+++.
T Consensus 181 ~~~~~~W~~aviYqI~~-DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~ 259 (683)
T PRK09505 181 AAAPFDWHNATVYFVLT-DRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQQLGVNALWISSPLEQIHGW 259 (683)
T ss_pred CCCChhhccCcEEEEeh-hhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHHHcCCCEEEeCccccccccc
Confidence 34677889999999995 3321 1 26999999999999999999999999999862
Q ss_pred ------------CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCC--------------
Q 014447 70 ------------APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDG-------------- 123 (424)
Q Consensus 70 ------------~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~-------------- 123 (424)
++|||.+.||+.|| ++|||++||++||++||++|||||||+|+||++..+...
T Consensus 260 ~~~g~~g~~~~~~yhgY~~~D~~~id-~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~ 338 (683)
T PRK09505 260 VGGGTKGDFPHYAYHGYYTLDWTKLD-ANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGD 338 (683)
T ss_pred cccccccCCCcCCCCCCCccccccCC-CCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhcc
Confidence 57999999999999 999999999999999999999999999999999542110
Q ss_pred ------CcceeecCCCCCCCCCCCCCccc---ccCCCccCCCCC---------------CCCCCCCCCCCCCCCCC----
Q 014447 124 ------RGIYCIFEGGTSDDRLDWGPSFI---CRGDKEYSDGQG---------------NDDTGEDFQPAPDIDHL---- 175 (424)
Q Consensus 124 ------~~~~~~~~~~~~~~~~~w~~~~~---~~~~~~~~~~~~---------------~~~~~~~~~~~~dln~~---- 175 (424)
...|..|... ...+|..... ..+...|..+.+ .....+....+||||++
T Consensus 339 ~~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~ 415 (683)
T PRK09505 339 ENKKTLGERWSDWQPA---AGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQA 415 (683)
T ss_pred ccccccCccccccccc---ccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccc
Confidence 0111111100 0112211100 001111211110 11112334678888886
Q ss_pred -------------------CHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhc----------C------
Q 014447 176 -------------------NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENT----------S------ 220 (424)
Q Consensus 176 -------------------np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~----------~------ 220 (424)
||+|+++|++++++|++++||||||+|+|++++.+||+++.++. +
T Consensus 416 ~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~~~~ 495 (683)
T PRK09505 416 SGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDKALD 495 (683)
T ss_pred cccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 45999999999999999899999999999999999999983321 1
Q ss_pred --CCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhc--chhhhhhhhcCCCCCCcC
Q 014447 221 --PDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ--GELWRLKDSNGKPPGFIG 296 (424)
Q Consensus 221 --p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 296 (424)
+++++||+|.... ....|.. .+++++++|++...+..++. ..+........ ...
T Consensus 496 ~~~~~~vGEvw~~~~----------------~~~~y~~--~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~~---~~~- 553 (683)
T PRK09505 496 DAPFWMTGEAWGHGV----------------MKSDYYR--HGFDAMINFDYQEQAAKAVDCLAQMDPTYQQMA---EKL- 553 (683)
T ss_pred cCCeEEEEEecCCch----------------hhHHHHh--hcCccccCchHHHHHHHHHHHHHHHHHHHHHHh---hhc-
Confidence 3679999996321 1123433 46888999988765544332 12222221111 100
Q ss_pred cCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCC-------------------CCc--------
Q 014447 297 ILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHF-------------------FDW-------- 349 (424)
Q Consensus 297 ~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~-------------------~~w-------- 349 (424)
...+.++|++|||++|+.+... +.++.++|++++||+||+|+|||||| |+|
T Consensus 554 -~~~~~l~FLdNHDt~Rf~s~~~-~~~~~klAaall~tlpGiP~IYYGdEiGm~gg~~g~DP~~~~R~~M~W~~~~~~~~ 631 (683)
T PRK09505 554 -QDFNVLSYLSSHDTRLFFEGGQ-SYAKQRRAAELLLLAPGAVQIYYGDESARPFGPTGSDPLQGTRSDMNWQEVSGKSA 631 (683)
T ss_pred -CccceeecccCCChhhhhhhcC-chHHHHHHHHHHHhCCCCcEEEechhhCccCCCCCCCCcccccccCCccccccchH
Confidence 1234578999999999987765 33688999999999999999999985 346
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEE---CCEEEEEECC
Q 014447 350 GLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAI---GDRVIMKIGP 397 (424)
Q Consensus 350 ~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r---~~~~lv~ln~ 397 (424)
+++++||+|++||+++|+|+.|.++.+. ++++++|.| +++++|++|.
T Consensus 632 ~Ll~~~kkLi~LRk~~pAL~~G~~~~l~-~~~~~aF~R~~~~d~vlVv~~~ 681 (683)
T PRK09505 632 ALLAHWQKLGQFRARHPAIGAGKQTTLS-LKQYYAFVREHGDDKVMVVWAG 681 (683)
T ss_pred HHHHHHHHHHHHHhhCHHhhCCceEEec-cCCEEEEEEEeCCCEEEEEEeC
Confidence 3899999999999999999999998874 568999999 6788999886
|
|
| >TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=486.65 Aligned_cols=361 Identities=19% Similarity=0.283 Sum_probs=265.2
Q ss_pred CCCCceEEEeec---CCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCC-CCCCcccccCCCCCCCCCHHHHHH
Q 014447 20 FTSPALLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAP-QGYMPGRLYDLDASKYGSQADLKS 95 (424)
Q Consensus 20 ~~~~~v~~~~f~---~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~-~gY~~~d~~~id~~~~Gt~edl~~ 95 (424)
|+++.|+||+|. -|+.++++|||+||+++|+|||+|||++|||+||++++.. +||++.||++|| |+|||++||++
T Consensus 1 W~~~~v~Y~i~~~~f~~~~~~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id-~~~Gt~~~~~~ 79 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDSTGDGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAIN-PLFGTMADFEE 79 (543)
T ss_pred CcccCEEEEEEhHHHhcCCCCCccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccC-cccCCHHHHHH
Confidence 889999999995 2555667899999999999999999999999999998864 799999999999 99999999999
Q ss_pred HHHHHHHcCCEEEEeeecccCCCCCCC---------CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC
Q 014447 96 LIQAFRQKGIKCLADMVINHRTAERKD---------GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF 166 (424)
Q Consensus 96 Lv~~aH~~Gi~VilD~v~NH~~~~~~~---------~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (424)
||++||++||+||+|+|+|||+.+|+. +..+|+.+.+.....+.+|...+. ...+.+....++++.+.+.
T Consensus 80 lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~y~~~f~ 158 (543)
T TIGR02403 80 LVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFG-GSAWEYFGDTGQYYLHLFD 158 (543)
T ss_pred HHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCC-CcCccccCCCCceEEeccC
Confidence 999999999999999999999998851 223455554422112234433221 1122233345567777788
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC-----------------------HHHHHHHHHhc--CC
Q 014447 167 QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-----------------------PSITKVYMENT--SP 221 (424)
Q Consensus 167 ~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~-----------------------~~~~~~~~~~~--~p 221 (424)
..+||||++||+|+++|.+++++|++ .||||||||+|++++ .+||+++.+.. +|
T Consensus 159 ~~~pdln~~np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 237 (543)
T TIGR02403 159 KTQADLNWENPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFGDN 237 (543)
T ss_pred CcCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999998 899999999999985 35888874432 45
Q ss_pred -CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHh-cCCceeeecccchHHHHHHhcc--------hhhhhhhhcCCC
Q 014447 222 -DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGILQAAVQG--------ELWRLKDSNGKP 291 (424)
Q Consensus 222 -~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~df~~~~~~~~~~~~--------~~~~~~~~~~~~ 291 (424)
+|+|||+|... ...+..|... ...+++.|+|.. .......+ +...+.......
T Consensus 238 ~~~lvgE~~~~~---------------~~~~~~y~~~~~~~~d~~~nf~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (543)
T TIGR02403 238 DSVTVGEMSSTT---------------IENCIRYSNPENKELSMVFTFHH--LKVDYPNGEKWTLAKFDFAKLKEIFSTW 300 (543)
T ss_pred CeEEEEEeCCCC---------------HHHHHhhhCCCCCeeCeEEChhh--hhchhccccccccCCCCHHHHHHHHHHH
Confidence 78999998531 2344455432 235677777752 11111111 111221111000
Q ss_pred CCCcCcCCCcceecccCCCCCcCcccCCCCc----hhHHHHHHHHHcCCCeeEEecCCCC--------------------
Q 014447 292 PGFIGILPQNAVTFIDNHDTGSTQRLWPFPS----DKVMLGYAYILTHPGTPCIFYDHFF-------------------- 347 (424)
Q Consensus 292 ~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~----~~~~~a~a~~l~~pG~P~iyyG~~~-------------------- 347 (424)
...........++|++|||++|..+.++... +..++|+++++|+||+|+||||||+
T Consensus 301 ~~~~~~~~~~~~~fl~NHD~~R~~s~~g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~ 380 (543)
T TIGR02403 301 QTGMQAGGGWNALFWNNHDQPRAVSRFGDDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLN 380 (543)
T ss_pred HHhccccCcceeeecCCCChhhHHHhcCCchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHH
Confidence 0000001122367999999999988776322 2467888899999999999999742
Q ss_pred -------------------------------Cc----------------------------------chHHHHHHHHHHH
Q 014447 348 -------------------------------DW----------------------------------GLKEAISKLAAVR 362 (424)
Q Consensus 348 -------------------------------~w----------------------------------~l~~~~~~L~~lR 362 (424)
+| +++++||+|++||
T Consensus 381 ~~~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lR 460 (543)
T TIGR02403 381 AYDILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQKLIALR 460 (543)
T ss_pred HHHHHhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHH
Confidence 23 2789999999999
Q ss_pred HhcCCCCCCCeEEEecC-CCEEEEEE---CCEEEEEECCCCC
Q 014447 363 NRNGINTASRVNILASD-ADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 363 ~~~~al~~G~~~~~~~~-~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
|++|+|..|.++.+..+ +++++|.| +++++|++|.+.+
T Consensus 461 k~~~aL~~G~~~~~~~~~~~v~a~~R~~~~~~~lVv~N~s~~ 502 (543)
T TIGR02403 461 KSEPVITDGDYQFLLPDDPSVWAYTRTYKNQKLLVINNFYGE 502 (543)
T ss_pred hhcccccCccEEEeecCCCcEEEEEEEcCCcEEEEEEECCCC
Confidence 99999999999988765 47999999 6789999998644
|
Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor. |
| >PRK10933 trehalose-6-phosphate hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-60 Score=483.64 Aligned_cols=363 Identities=17% Similarity=0.248 Sum_probs=266.9
Q ss_pred cCCCCCCceEEEeec---CCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccccCCCCCCCCCHHH
Q 014447 17 FLPFTSPALLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQAD 92 (424)
Q Consensus 17 ~p~~~~~~v~~~~f~---~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~ed 92 (424)
.|.|++++|+||+|. .|+.++++|||+||+++|+|||+|||++|||+||++++. .|||++.||++|| |+|||++|
T Consensus 4 ~~~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id-~~~Gt~~d 82 (551)
T PRK10933 4 LPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAID-PTYGTLDD 82 (551)
T ss_pred cchhhhcCeEEEEEchHhhcCCCCCCcCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcC-cccCCHHH
Confidence 488999999999996 244556789999999999999999999999999999876 6899999999999 99999999
Q ss_pred HHHHHHHHHHcCCEEEEeeecccCCCCCCC---------CCcceeecCCCCCC-CCCCCCCcccccCCCccCCCCCCCCC
Q 014447 93 LKSLIQAFRQKGIKCLADMVINHRTAERKD---------GRGIYCIFEGGTSD-DRLDWGPSFICRGDKEYSDGQGNDDT 162 (424)
Q Consensus 93 l~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~---------~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~ 162 (424)
|++||++||++||+||+|+|+||+|.+|+. +..+|+.+.++.+. .+.+|...+ ....+.|.+..+.++.
T Consensus 83 ~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~y~ 161 (551)
T PRK10933 83 FDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKF-GGSAWRWHAESEQYYL 161 (551)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccC-CCccccccCCCCceEe
Confidence 999999999999999999999999998852 23456666553322 123443332 2233445555566777
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH-----------------------HHHHHHHHhc
Q 014447 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP-----------------------SITKVYMENT 219 (424)
Q Consensus 163 ~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~-----------------------~~~~~~~~~~ 219 (424)
+.+.+.+||||++||+||++|++++++|++ +||||||+|+|++++. +|++++.+..
T Consensus 162 ~~f~~~~pdLn~~np~V~~~l~~~~~~W~~-~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (551)
T PRK10933 162 HLFAPEQADLNWENPAVRAELKKVCEFWAD-RGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRDV 240 (551)
T ss_pred ecccccCCccCCCCHHHHHHHHHHHHHHHH-CCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHHh
Confidence 778899999999999999999999999997 9999999999999863 4666664432
Q ss_pred -C-C-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHh-cCCceeeecccchHHHHHHhcch--------hhhhhhh
Q 014447 220 -S-P-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGILQAAVQGE--------LWRLKDS 287 (424)
Q Consensus 220 -~-p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~df~~~~~~~~~~~~~--------~~~~~~~ 287 (424)
+ + .++|||++... ...+..|... ...+++.|+|.. .......+. ...+...
T Consensus 241 ~~~~~~~~vgE~~~~~---------------~~~~~~y~~~~~~~~~~~fnf~~--~~~~~~~~~~~~~~~~~~~~~~~~ 303 (551)
T PRK10933 241 FTPRGLMTVGEMSSTS---------------LEHCQRYAALTGSELSMTFNFHH--LKVDYPNGEKWTLAKPDFVALKTL 303 (551)
T ss_pred hcccCcEEEEeecCCC---------------HHHHHHhhcccCCeeeeEecHHH--hhhhhccCCcccccccCHHHHHHH
Confidence 2 2 67999998531 3444555432 234556666642 221111111 1111111
Q ss_pred cCCCCCCcCcCCCcceecccCCCCCcCcccCCCCch----hHHHHHHHHHcCCCeeEEecCCCC----------------
Q 014447 288 NGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD----KVMLGYAYILTHPGTPCIFYDHFF---------------- 347 (424)
Q Consensus 288 ~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~----~~~~a~a~~l~~pG~P~iyyG~~~---------------- 347 (424)
......... .......|++|||++|..+.++.+.+ ..+++.+++||+||+|+||||||+
T Consensus 304 ~~~~~~~~~-~~~~~~~fl~NHD~~R~~sr~g~~~~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~ 382 (551)
T PRK10933 304 FRHWQQGMH-NVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDV 382 (551)
T ss_pred HHHHHHhhc-ccCeeccccCCCCcccHHHHcCCchhHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCH
Confidence 000000000 01123578999999999888763322 356778899999999999999852
Q ss_pred -----------------------------------Cc----------------------------------chHHHHHHH
Q 014447 348 -----------------------------------DW----------------------------------GLKEAISKL 358 (424)
Q Consensus 348 -----------------------------------~w----------------------------------~l~~~~~~L 358 (424)
+| +++.+||+|
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~L 462 (551)
T PRK10933 383 ESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAALADEDSVFYTYQKL 462 (551)
T ss_pred HHHHHHHHHhhcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHHHhcCcccHHHHHHHH
Confidence 24 277999999
Q ss_pred HHHHHhcCCCCCCCeEEEec-CCCEEEEEE---CCEEEEEECCCCC
Q 014447 359 AAVRNRNGINTASRVNILAS-DADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 359 ~~lR~~~~al~~G~~~~~~~-~~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
++||+++|+|..|.+..+.. ++++++|.| +++++|++|.+.+
T Consensus 463 i~lRk~~~aL~~G~~~~~~~~~~~v~af~R~~~~~~~lvv~N~s~~ 508 (551)
T PRK10933 463 IALRKQEPVLTWGDYQDLLPNHPSLWCYRREWQGQTLLVIANLSRE 508 (551)
T ss_pred HHHhhcChhhccceeEEeccCCCcEEEEEEEcCCcEEEEEEECCCC
Confidence 99999999999999987754 467999999 6789999998653
|
|
| >PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=411.62 Aligned_cols=287 Identities=25% Similarity=0.446 Sum_probs=201.9
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
|||+||++||||||+|||++|||+||++++ .+|||++.||++|| |+|||++||++||++||++||+||+|+|+||++.
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~ 79 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVD-PRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSD 79 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEES-TTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEET
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccc-cccchhhhhhhhhhccccccceEEEeeecccccc
Confidence 899999999999999999999999999998 79999999999999 9999999999999999999999999999999999
Q ss_pred CCCC----------CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 014447 119 ERKD----------GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN 188 (424)
Q Consensus 119 ~~~~----------~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~ 188 (424)
+|+. ...+|+.+..+....+.+|... .+...|.... ......++..+||||++||+||++|+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~dln~~n~~v~~~i~~~~~ 155 (316)
T PF00128_consen 80 DHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSY---FGGSNWEYDD-WGDEYQFWSDLPDLNYENPEVREYIIDVLK 155 (316)
T ss_dssp TSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCS---TTTSSEESCH-HTHCHSSSTTSEEBETTSHHHHHHHHHHHH
T ss_pred ccccccccccccccccccceeecccccccccccccc---cccccccccc-cccccccccccchhhhhhhhhhhhhccccc
Confidence 9852 1223333322111111222210 1111111100 000035789999999999999999999999
Q ss_pred HHHHhcCCCeEEecccCCCCHHHHHHHHHhc---CC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHh-cCCcee
Q 014447 189 WLKTEIGFDGWRFDFVKGYAPSITKVYMENT---SP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVA 263 (424)
Q Consensus 189 ~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~---~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 263 (424)
+|++ .||||||+|+|++++.++|+++.++. .| .+++||++... ...+..+... ......
T Consensus 156 ~w~~-~giDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~---------------~~~~~~~~~~~~~~~~~ 219 (316)
T PF00128_consen 156 FWIE-EGIDGFRLDAAKHIPKEFWKEFRDEVKEEKPDFFLIGEVWGGD---------------NEDLRQYAYDGYFDLDS 219 (316)
T ss_dssp HHHH-TTESEEEETTGGGSSHHHHHHHHHHHHHHHTTSEEEEEESSSS---------------HHHHHHHHHHGTTSHSE
T ss_pred chhh-ceEeEEEEccccccchhhHHHHhhhhhhhccccceeeeeccCC---------------ccccchhhhccccccch
Confidence 9998 88999999999999999999995543 35 78999999642 2223233222 122333
Q ss_pred eecccchHHHHHHh----cch--hhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCC
Q 014447 264 AFDFTTKGILQAAV----QGE--LWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPG 337 (424)
Q Consensus 264 ~~df~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG 337 (424)
.+++.......... .+. ...+............ .+...++|++|||+.|..+.......++++|++++||+||
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~ll~~pG 298 (316)
T PF00128_consen 220 VFDFPDYGLRSSFFDFWRHGDGDASDLANWLSSWQSSYP-DPYRAVNFLENHDTPRFASRFGNNRDRLKLALAFLLTSPG 298 (316)
T ss_dssp EEHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHST-TGGGEEEESSHTTSSTHHHHTTTHHHHHHHHHHHHHHSSS
T ss_pred hhcccccccccchhhhhccccchhhhhhhhhhhhhhhhc-ccceeeecccccccccchhhhcccchHHHHHHHHHHcCCC
Confidence 45555443333322 111 1111111100000000 1345689999999999888776444489999999999999
Q ss_pred eeEEecCCCCC
Q 014447 338 TPCIFYDHFFD 348 (424)
Q Consensus 338 ~P~iyyG~~~~ 348 (424)
+|+||||||++
T Consensus 299 ~P~iy~G~E~g 309 (316)
T PF00128_consen 299 IPMIYYGDEIG 309 (316)
T ss_dssp EEEEETTGGGT
T ss_pred ccEEEeChhcc
Confidence 99999999976
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A .... |
| >TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=419.55 Aligned_cols=339 Identities=23% Similarity=0.308 Sum_probs=229.3
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHH
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~ 99 (424)
.+.|||++.. .++.+ .|||+||+++|+|||+||||+||||||++.+ .+|||++.+|++|+ ++|||++|||+||++
T Consensus 92 ~~~viYE~hv-~~f~~-~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~-~~~G~~~e~k~lV~~ 168 (542)
T TIGR02402 92 EEAVIYELHV-GTFTP-EGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPH-NAYGGPDDLKALVDA 168 (542)
T ss_pred cccEEEEEEh-hhcCC-CCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccc-cccCCHHHHHHHHHH
Confidence 4569999997 44433 6999999999999999999999999998876 57999999999999 999999999999999
Q ss_pred HHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCH--
Q 014447 100 FRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP-- 177 (424)
Q Consensus 100 aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np-- 177 (424)
||++||+||||+|+||++.+++ |... .. + |+.. . .. ..| .+++|+++|
T Consensus 169 aH~~Gi~VilD~V~NH~~~~~~-----~~~~-----~~-~-y~~~---~-----------~~--~~w--g~~~n~~~~~~ 218 (542)
T TIGR02402 169 AHGLGLGVILDVVYNHFGPEGN-----YLPR-----YA-P-YFTD---R-----------YS--TPW--GAAINFDGPGS 218 (542)
T ss_pred HHHCCCEEEEEEccCCCCCccc-----cccc-----cC-c-cccC---C-----------CC--CCC--CCccccCCCcH
Confidence 9999999999999999986643 1100 00 0 1110 0 00 011 246999999
Q ss_pred -HHHHHHHHHHHHHHHhcCCCeEEecccCCCCH----HHHHHH---HHhcCC----CeEEeeecCCCC-CCC---CCCC-
Q 014447 178 -RVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP----SITKVY---MENTSP----DFAVGEKWDSLS-YGP---DGKP- 240 (424)
Q Consensus 178 -~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~----~~~~~~---~~~~~p----~~~v~E~~~~~~-~~~---~~~~- 240 (424)
+||++|++++++|++++||||||+|+++.++. +||+++ +++++| +++|||.+.+.. ... .+..
T Consensus 219 ~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~ 298 (542)
T TIGR02402 219 DEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAELRPVHLIAESDLNDPSLVTPREDGGYG 298 (542)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCCceEEEEEecCCCCCcccccccCCccc
Confidence 99999999999999999999999999988853 488877 445544 569999875422 110 0000
Q ss_pred ---CCCCCCchhHHHHHHHhcC-CceeeecccchHHHHHHh-cc-----hhhhhhh-hcCCCCCCcCcCCCcceecccCC
Q 014447 241 ---DANQDGHRGALKDWVQAAG-GAVAAFDFTTKGILQAAV-QG-----ELWRLKD-SNGKPPGFIGILPQNAVTFIDNH 309 (424)
Q Consensus 241 ---~~~~~~~~~~~~~~~~~~~-~~~~~~df~~~~~~~~~~-~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~f~~nH 309 (424)
.++ +.++..+..++.+.. +..+.+.- ....+...+ .+ +...... ..+..... ..+...++|++||
T Consensus 299 ~d~~~~-~~~~~~~~~~~~g~~~g~~~~~~~-~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~vnfl~nH 374 (542)
T TIGR02402 299 LDAQWN-DDFHHALHVLLTGERQGYYADFGD-PLAALAKTLRDGFVYDGEYSPFRGRPHGRPSGD--LPPHRFVVFIQNH 374 (542)
T ss_pred eEEEEC-chHHHHHHHHhcCCcceeecccCc-CHHHHHHHHHHhcccCccccccccccCCCCCCC--CCHHHEEEEccCc
Confidence 011 123344444432110 01000000 001111111 00 0000000 00000000 0245679999999
Q ss_pred CC-------CcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC-----------------------------------
Q 014447 310 DT-------GSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF----------------------------------- 347 (424)
Q Consensus 310 D~-------~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~----------------------------------- 347 (424)
|+ .|+.... +.++.++|.+++||+||+||||||||+
T Consensus 375 D~~gn~~~~~Rl~~~~--~~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~ 452 (542)
T TIGR02402 375 DQIGNRALGERLSQLL--SPGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWD 452 (542)
T ss_pred ccccccchhhhhhhcC--CHHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccc
Confidence 97 5665544 347899999999999999999999852
Q ss_pred ------------------Cc---------chHHHHHHHHHHHHhcCCCCCCCeEEEe----cCCCEEEEEE-CCEEEEEE
Q 014447 348 ------------------DW---------GLKEAISKLAAVRNRNGINTASRVNILA----SDADVYIAAI-GDRVIMKI 395 (424)
Q Consensus 348 ------------------~w---------~l~~~~~~L~~lR~~~~al~~G~~~~~~----~~~~v~~~~r-~~~~lv~l 395 (424)
+| +++++||+||+|||++++|+.+..+.+. .++.++++.. +++++|++
T Consensus 453 ~~~~pdp~~~~~~~~~~~~W~~~~~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 532 (542)
T TIGR02402 453 PEDVPDPQDEETFLRSKLDWAEAESGEHARWLAFYRDLLALRRELPVLLLPGARALEVVVDEDPGWVAVRFGRGELVLAA 532 (542)
T ss_pred cccCCCCCchhhHhhccCCcccccccchHHHHHHHHHHHHHhccCccccCCCcccceeeecCCCCEEEEEECCCeEEEEE
Confidence 36 2789999999999999999887754432 3567888776 56889999
Q ss_pred CCCC
Q 014447 396 GPKM 399 (424)
Q Consensus 396 n~~~ 399 (424)
|.+.
T Consensus 533 N~~~ 536 (542)
T TIGR02402 533 NLST 536 (542)
T ss_pred eCCC
Confidence 9854
|
Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. |
| >PRK12313 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-51 Score=426.14 Aligned_cols=354 Identities=20% Similarity=0.261 Sum_probs=234.6
Q ss_pred CceEEEeecCCCC----CCCCCcHHHHHhhh-hHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHH
Q 014447 23 PALLFQGFNWESS----NKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKS 95 (424)
Q Consensus 23 ~~v~~~~f~~ds~----~~~~G~~~gi~~~L-~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~ 95 (424)
.-+||++.. .++ .++.|||++++++| +|||+||||+||||||++++ .+|||+++||++|+ |+|||++|||+
T Consensus 147 ~~~iYe~hv-~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~-~~~Gt~~d~k~ 224 (633)
T PRK12313 147 PISIYEVHL-GSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPT-SRYGTPEDFMY 224 (633)
T ss_pred CceEEEEeh-hccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCC-CCCCCHHHHHH
Confidence 358999886 332 23459999999995 99999999999999999987 57999999999999 99999999999
Q ss_pred HHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCC
Q 014447 96 LIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHL 175 (424)
Q Consensus 96 Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~ 175 (424)
||++||++||+||||+|+||++.++.. ...|.+ .+ +. .+.++...+. ..| +.++||++
T Consensus 225 lv~~~H~~Gi~VilD~V~nH~~~~~~~----~~~~~~-~~-----~~---------~~~~~~~~~~--~~w-~~~~~n~~ 282 (633)
T PRK12313 225 LVDALHQNGIGVILDWVPGHFPKDDDG----LAYFDG-TP-----LY---------EYQDPRRAEN--PDW-GALNFDLG 282 (633)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCccc----ccccCC-Cc-----ce---------eecCCCCCcC--CCC-CCcccCCC
Confidence 999999999999999999999876431 011111 00 00 0001100010 112 23689999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEecccCCC-----------------------CHHHHHHH---HHhcCC-CeEEeee
Q 014447 176 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY-----------------------APSITKVY---MENTSP-DFAVGEK 228 (424)
Q Consensus 176 np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~-----------------------~~~~~~~~---~~~~~p-~~~v~E~ 228 (424)
||+||++|++++++|++++||||||+|++.++ +.+||+++ +++.+| +++|||.
T Consensus 283 ~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~ 362 (633)
T PRK12313 283 KNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEE 362 (633)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 99999999999999999999999999988644 25788888 556677 7899997
Q ss_pred cCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch-hhhhhhhcCCCC-CCcCcCCCcceecc
Q 014447 229 WDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE-LWRLKDSNGKPP-GFIGILPQNAVTFI 306 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~f~ 306 (424)
+...... ..+ ...+.-+++..+++...+.+...+..+ ..+ ........ .+...... ..+++
T Consensus 363 ~~~~~~~--~~~-------------~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e-~~~l~ 425 (633)
T PRK12313 363 STAWPKV--TGP-------------VEVGGLGFDYKWNMGWMNDTLRYFEEDPIYR-KYHHNLLTFSFMYAFSE-NFVLP 425 (633)
T ss_pred CCCCccc--ccc-------------ccCCCCCcCceeCcHHHHHHHHHhhhCcccc-ccccccchHHHhhhhhc-ccccC
Confidence 6432100 000 000011233333333333333322211 100 00000000 00000011 12467
Q ss_pred cCCCCC-----cCcccCCCCc----hhHHHHHHHHHcCCCeeEEecCCCC------------Cc---------chHHHHH
Q 014447 307 DNHDTG-----STQRLWPFPS----DKVMLGYAYILTHPGTPCIFYDHFF------------DW---------GLKEAIS 356 (424)
Q Consensus 307 ~nHD~~-----r~~~~~~~~~----~~~~~a~a~~l~~pG~P~iyyG~~~------------~w---------~l~~~~~ 356 (424)
+|||+. |+...+..+. +++|++++++||+||+||||||+|+ +| ++.+++|
T Consensus 426 ~sHD~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~r 505 (633)
T PRK12313 426 FSHDEVVHGKKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEWKHDESLEWHLLEDPMNAGMQRFTS 505 (633)
T ss_pred CCCcccccCCccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccCCccCCCCccccCChhHHHHHHHHH
Confidence 899994 4333333222 5789999999999999999999975 35 3788999
Q ss_pred HHHHHHHhcCCCCC-----CCeEEEec---CCCEEEEEEC-----CEEEEEECCCCC------CCCcCCCCcEEEEeCCc
Q 014447 357 KLAAVRNRNGINTA-----SRVNILAS---DADVYIAAIG-----DRVIMKIGPKMD------IGNLIPSDFKVAADGTD 417 (424)
Q Consensus 357 ~L~~lR~~~~al~~-----G~~~~~~~---~~~v~~~~r~-----~~~lv~ln~~~~------~~~~~~~~~~~~~~~~~ 417 (424)
+|++||+++|+|+. +.++++.. ++.+++|.|. ++++||+|.+.. ++....+.|+..++.+.
T Consensus 506 ~Li~LRr~~paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~~~~~~y~i~~p~~g~~~~ilnsd~ 585 (633)
T PRK12313 506 DLNQLYKDEPALWELDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTPVEREDYRIGVPVAGIYEEILNTDS 585 (633)
T ss_pred HHHHHHHhChHhhcccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCCCcccceeECCCCCCeEEEEEcCCc
Confidence 99999999999974 45677764 3469999992 468888998642 12122346777776554
|
|
| >TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=418.46 Aligned_cols=352 Identities=17% Similarity=0.212 Sum_probs=233.8
Q ss_pred ceEEEeecCCCCCCCCCcHHHHHhhh-hHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHH
Q 014447 24 ALLFQGFNWESSNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAF 100 (424)
Q Consensus 24 ~v~~~~f~~ds~~~~~G~~~gi~~~L-~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~a 100 (424)
.+||++.. .++.+ .|+|++|+++| +|||+||||+||||||++++ .+|||+++||++|+ ++|||.+|||+||++|
T Consensus 139 ~~iYe~hv-~~~~~-~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~-~~~Gt~~dlk~lV~~~ 215 (613)
T TIGR01515 139 VSIYELHL-GSWRH-GLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPT-SRFGTPDDFMYFVDAC 215 (613)
T ss_pred ceEEEEeh-hhccC-CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccc-cccCCHHHHHHHHHHH
Confidence 47898875 44433 49999999997 99999999999999999986 47999999999999 9999999999999999
Q ss_pred HHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 014447 101 RQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180 (424)
Q Consensus 101 H~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~ 180 (424)
|++||+||||+|+||++.++.. +..|.+ . +.|. . . +..... ...| +.++||++||+||
T Consensus 216 H~~Gi~VilD~V~NH~~~~~~~----~~~~~~-~----~~y~---~-~------~~~~~~--~~~w-~~~~~~~~~~~Vr 273 (613)
T TIGR01515 216 HQAGIGVILDWVPGHFPKDDHG----LAEFDG-T----PLYE---H-K------DPRDGE--HWDW-GTLIFDYGRPEVR 273 (613)
T ss_pred HHCCCEEEEEecccCcCCccch----hhccCC-C----ccee---c-c------CCccCc--CCCC-CCceecCCCHHHH
Confidence 9999999999999999876531 111111 0 0010 0 0 000000 1122 3578999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEecccCCC------------------------CHHHHHHH---HHhcCC-CeEEeeecCCC
Q 014447 181 KELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITKVY---MENTSP-DFAVGEKWDSL 232 (424)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~D~a~~~------------------------~~~~~~~~---~~~~~p-~~~v~E~~~~~ 232 (424)
++|++++++|++++||||||+|+++++ +.+||+++ +++.+| +++|||.+...
T Consensus 274 ~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~ 353 (613)
T TIGR01515 274 NFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEW 353 (613)
T ss_pred HHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCC
Confidence 999999999999999999999997544 24799888 555667 78999976431
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc-hhhhhhhhcCCCCCCcCcCCCcceecccCCCC
Q 014447 233 SYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT 311 (424)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~ 311 (424)
. ........+.-+++..+++...+.+...+.. ...+..........+..... ....+++|||+
T Consensus 354 ~---------------~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~sHD~ 417 (613)
T TIGR01515 354 P---------------GVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDPVERQYHHQLITFSMLYAFS-ENFVLPLSHDE 417 (613)
T ss_pred c---------------cccccccCCcCCcCeeeCchHHHHHHHHHhhChhhHhhccccccHHHHHHhh-hccccCCCCCC
Confidence 1 0000001111234444554444444433321 11111100000000000000 11336789999
Q ss_pred C-----cCcccCCCC----chhHHHHHHHHHcCCCeeEEecCCCC------------Cc---------chHHHHHHHHHH
Q 014447 312 G-----STQRLWPFP----SDKVMLGYAYILTHPGTPCIFYDHFF------------DW---------GLKEAISKLAAV 361 (424)
Q Consensus 312 ~-----r~~~~~~~~----~~~~~~a~a~~l~~pG~P~iyyG~~~------------~w---------~l~~~~~~L~~l 361 (424)
. |+......+ .+++|+++++++|+||+||||||+|+ +| ++.+++|+|++|
T Consensus 418 ~~~g~~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k~L~~L 497 (613)
T TIGR01515 418 VVHGKKSLLNKMPGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWNDTEQLDWHLLSFPMHQGVSVFVRDLNRT 497 (613)
T ss_pred cccCcccHHHhCCCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCCCCccCCCccccCcccHHHHHHHHHHHHH
Confidence 4 333333322 25789999999999999999999864 45 378899999999
Q ss_pred HHhcCCCCCC-----CeEEEec---CCCEEEEEEC-----CEEEEEECCCCC------CCCcCCCCcEEEEeCC
Q 014447 362 RNRNGINTAS-----RVNILAS---DADVYIAAIG-----DRVIMKIGPKMD------IGNLIPSDFKVAADGT 416 (424)
Q Consensus 362 R~~~~al~~G-----~~~~~~~---~~~v~~~~r~-----~~~lv~ln~~~~------~~~~~~~~~~~~~~~~ 416 (424)
|+++|+|..| .++++.. ++.+++|.|. ++++|++|.+.. ++-..++.|+..++.+
T Consensus 498 r~~~paL~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~~~~~~Y~i~~p~~g~~~~il~Sd 571 (613)
T TIGR01515 498 YQKSKALYEHDFDPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTPVVRHQYRVGVPQPGQYREVLNSD 571 (613)
T ss_pred HhhCHHhhccCCCCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCCCCccceEeCCCCCCeEEEEEeCC
Confidence 9999999644 4556643 4579999983 368899998543 2211134566666544
|
A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here. |
| >TIGR02104 pulA_typeI pullulanase, type I | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=421.26 Aligned_cols=360 Identities=21% Similarity=0.259 Sum_probs=241.8
Q ss_pred ceEEEeecCCCC---CC---CCCcHHHHHhh-----------hhHHHHcCCCEEEeCCCCCCCC----------CCCCCc
Q 014447 24 ALLFQGFNWESS---NK---AGGWYNSLKNS-----------IPDLSNAGITHVWLPPPSQSVA----------PQGYMP 76 (424)
Q Consensus 24 ~v~~~~f~~ds~---~~---~~G~~~gi~~~-----------L~ylk~lGv~~I~l~Pi~~~~~----------~~gY~~ 76 (424)
.|||++...+.. +. ..|+|.+++++ |+|||+||||+||||||++.++ +|||++
T Consensus 128 ~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~ 207 (605)
T TIGR02104 128 AIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDP 207 (605)
T ss_pred cEEEEEecchhccCCCCCcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCC
Confidence 489988852221 11 25888887765 9999999999999999998753 499999
Q ss_pred ccccCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCccccc
Q 014447 77 GRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICR 148 (424)
Q Consensus 77 ~d~~~id~~~~Gt--------~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 148 (424)
.||++++ ++||+ .+|||+||++||++||+||||+|+||++..... +|.+.. +.|+.. ..
T Consensus 208 ~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~------~f~~~~----~~~~~~--~~ 274 (605)
T TIGR02104 208 LNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREES------PFEKTV----PGYYYR--YN 274 (605)
T ss_pred ccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCCC------cccCCC----CCeeEE--EC
Confidence 9999999 99987 589999999999999999999999999753210 122110 111100 00
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHH---HhcCC-CeE
Q 014447 149 GDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP-DFA 224 (424)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~---~~~~p-~~~ 224 (424)
....+.+ ......++|+++|+||++|++++++|++++||||||+|++++++.+||+++. ++.+| +++
T Consensus 275 ~~g~~~~---------~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~l 345 (605)
T TIGR02104 275 EDGTLSN---------GTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIETMNEIRKALNKIDPNILL 345 (605)
T ss_pred CCCCccC---------CCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHHHHHHHHHHHhhCCCeEE
Confidence 0001111 1111247999999999999999999999999999999999999999999884 45567 779
Q ss_pred EeeecCCCCCCCCCCCCCCCCCchhHHHHHHHh-cCCceeeecccchHHHHHH---------hcch---hhhhhhhcCCC
Q 014447 225 VGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGILQAA---------VQGE---LWRLKDSNGKP 291 (424)
Q Consensus 225 v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~df~~~~~~~~~---------~~~~---~~~~~~~~~~~ 291 (424)
+||.|...... . .......... .-.....|++.++..+... ..|. ...+.......
T Consensus 346 igE~w~~~~~~-------~----~~~~~~~~~~~~~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~ 414 (605)
T TIGR02104 346 YGEGWDLGTPL-------P----PEQKATKANAYQMPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGS 414 (605)
T ss_pred EEccCCCCCCc-------c----hhhhhhhhccCCCCceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCC
Confidence 99999753210 0 0000000000 0012345677766666521 1111 11222211100
Q ss_pred C-----CCcCcCCCcceecccCCCCCcCcccCCC---------CchhHHHHHHHHHcCCCeeEEecCCCC----------
Q 014447 292 P-----GFIGILPQNAVTFIDNHDTGSTQRLWPF---------PSDKVMLGYAYILTHPGTPCIFYDHFF---------- 347 (424)
Q Consensus 292 ~-----~~~~~~~~~~~~f~~nHD~~r~~~~~~~---------~~~~~~~a~a~~l~~pG~P~iyyG~~~---------- 347 (424)
. ......|...++|++|||+.|+...+.. ..++.++|++++|++||+||||||||+
T Consensus 415 ~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~~~~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g~~n~ 494 (605)
T TIGR02104 415 IELDAVKPSALDPSQSINYVECHDNHTLWDKLSLANPDETEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQGDENS 494 (605)
T ss_pred hhhcccccccCChhheEEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCceeecchhhhccCCCCCCC
Confidence 0 0011245678999999999887433211 134789999999999999999999964
Q ss_pred ----------Cc-------chHHHHHHHHHHHHhcCCCCCCCeE-------EEe-cCCCEEEEEEC--------CEEEEE
Q 014447 348 ----------DW-------GLKEAISKLAAVRNRNGINTASRVN-------ILA-SDADVYIAAIG--------DRVIMK 394 (424)
Q Consensus 348 ----------~w-------~l~~~~~~L~~lR~~~~al~~G~~~-------~~~-~~~~v~~~~r~--------~~~lv~ 394 (424)
+| ++++++|+|++||+++|+|+.|.+. .+. .++.+++|.|. ++++|+
T Consensus 495 y~~~d~~~~ldW~~~~~~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~~~~~~~~~llVv 574 (605)
T TIGR02104 495 YNSPDSINQLDWDRKATFKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDHANGDPWKDIIVI 574 (605)
T ss_pred ccCCCcccccCccccccchHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCCcCCCCcCeEEEE
Confidence 35 3899999999999999999988753 222 24679999982 268999
Q ss_pred ECCCCCCCCc---CCCCcEEEEeCC
Q 014447 395 IGPKMDIGNL---IPSDFKVAADGT 416 (424)
Q Consensus 395 ln~~~~~~~~---~~~~~~~~~~~~ 416 (424)
+|.+...-.. .++.|+..++..
T Consensus 575 ~N~s~~~~~v~lp~~~~w~~~~~~~ 599 (605)
T TIGR02104 575 HNANPEPVDIQLPSDGTWNVVVDNK 599 (605)
T ss_pred EeCCCCCeEEECCCCCCEEEEECCC
Confidence 9986432111 134677776654
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases. |
| >PRK14706 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-49 Score=404.25 Aligned_cols=354 Identities=18% Similarity=0.187 Sum_probs=235.3
Q ss_pred ceEEEeec--CCCCCCC-CCcHHHHHhhh-hHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHH
Q 014447 24 ALLFQGFN--WESSNKA-GGWYNSLKNSI-PDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLI 97 (424)
Q Consensus 24 ~v~~~~f~--~ds~~~~-~G~~~gi~~~L-~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv 97 (424)
-+||++-. |....++ -|+|++++++| +|||+||||+|+||||.+.+ .+|||++.+|++++ ++|||.+|||+||
T Consensus 145 ~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~-~~~g~~~~~~~lv 223 (639)
T PRK14706 145 ISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPT-SRLGTPEDFKYLV 223 (639)
T ss_pred cEEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccc-cccCCHHHHHHHH
Confidence 58888774 2211222 37999999997 89999999999999999975 47999999999999 9999999999999
Q ss_pred HHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCH
Q 014447 98 QAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP 177 (424)
Q Consensus 98 ~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np 177 (424)
++||++||+||||+|+||++.++.. ...|. +++. +. +.+....+ ...|.. ..+|+.+|
T Consensus 224 ~~~H~~gi~VilD~v~nH~~~~~~~----l~~~d-g~~~----y~----------~~~~~~g~--~~~w~~-~~~~~~~~ 281 (639)
T PRK14706 224 NHLHGLGIGVILDWVPGHFPTDESG----LAHFD-GGPL----YE----------YADPRKGY--HYDWNT-YIFDYGRN 281 (639)
T ss_pred HHHHHCCCEEEEEecccccCcchhh----hhccC-CCcc----ee----------ccCCcCCc--CCCCCC-cccCCCCH
Confidence 9999999999999999999876431 11111 1110 00 00000000 112222 24899999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEecccCCC----------------------CHHHHHHH---HHhcCC-CeEEeeecCC
Q 014447 178 RVQKELSDWMNWLKTEIGFDGWRFDFVKGY----------------------APSITKVY---MENTSP-DFAVGEKWDS 231 (424)
Q Consensus 178 ~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~----------------------~~~~~~~~---~~~~~p-~~~v~E~~~~ 231 (424)
+||++|++++++|++|+||||||+|++.+| ...||+.+ +++.+| +++|||.+.+
T Consensus 282 eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~ 361 (639)
T PRK14706 282 EVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTS 361 (639)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 999999999999999999999999998876 23677777 556677 7899998753
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh-cchhhhhhhhcCCCCCCcCcCCCcceecccCCC
Q 014447 232 LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD 310 (424)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD 310 (424)
-+ ... ..... ..+++..+++...+.+...+ ...+.+.............. ......+++|||
T Consensus 362 ~~-------~v~--------~~~~~-G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~~lt~~~~y~-~~e~~il~~SHD 424 (639)
T PRK14706 362 FP-------GVT--------VPTPY-GLGFDYKWAMGWMNDTLAYFEQDPLWRKYHHHKLTFFNVYR-TSENYVLAISHD 424 (639)
T ss_pred Cc-------Ccc--------cccCC-CCccccEeccHHHHHHHHHhccCchhhhhchhccchhhhhh-ccccEecCCCCc
Confidence 11 000 00011 12344445444444333322 22222211110000000000 011134789999
Q ss_pred CCcCcc--c---CCCC----chhHHHHHHHHHcCCCeeEEecCCCCC------------c---------chHHHHHHHHH
Q 014447 311 TGSTQR--L---WPFP----SDKVMLGYAYILTHPGTPCIFYDHFFD------------W---------GLKEAISKLAA 360 (424)
Q Consensus 311 ~~r~~~--~---~~~~----~~~~~~a~a~~l~~pG~P~iyyG~~~~------------w---------~l~~~~~~L~~ 360 (424)
+.+... + ...+ .+++|+++++++|+||+|+||||+|++ | ++.+++|+|++
T Consensus 425 ev~~~k~sl~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew~~~~~l~W~l~~~~~~~~l~~~~k~L~~ 504 (639)
T PRK14706 425 EVVHLKKSMVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEWNHDASLPWYLTDVPDHRGVMNLVRRLNQ 504 (639)
T ss_pred cccCCccchHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcccCCCCcccCCHHHHHHHHHHHHHHH
Confidence 988642 1 1111 256899999999999999999999764 5 27889999999
Q ss_pred HHHhcCCCCCCC-----eEEEec---CCCEEEEEEC-----CEEEEEECCCCC------CCCcCCCCcEEEEeCCc
Q 014447 361 VRNRNGINTASR-----VNILAS---DADVYIAAIG-----DRVIMKIGPKMD------IGNLIPSDFKVAADGTD 417 (424)
Q Consensus 361 lR~~~~al~~G~-----~~~~~~---~~~v~~~~r~-----~~~lv~ln~~~~------~~~~~~~~~~~~~~~~~ 417 (424)
||+++|+|..|. ++++.. ++.|+||.|. +.+|||+|.+.. ++-..++.|+..++.+.
T Consensus 505 L~k~~paL~~gd~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~~~~~~y~ig~p~~g~~~~i~nsd~ 580 (639)
T PRK14706 505 LYRERPDWHRGDKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTPVYREQYRIGVPQGGEYRVLLSTDD 580 (639)
T ss_pred HHHhCHHHhhCCCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCCCCcCCeEECCCCCCeEEEEEcCCc
Confidence 999999997665 555543 4689999992 238888888541 33333446666666553
|
|
| >PRK05402 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-49 Score=414.81 Aligned_cols=354 Identities=17% Similarity=0.230 Sum_probs=230.7
Q ss_pred ceEEEeecCCC-----CCCCCCcHHHHHhhh-hHHHHcCCCEEEeCCCCCCCC--CCCCCcccccCCCCCCCCCHHHHHH
Q 014447 24 ALLFQGFNWES-----SNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLDASKYGSQADLKS 95 (424)
Q Consensus 24 ~v~~~~f~~ds-----~~~~~G~~~gi~~~L-~ylk~lGv~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~~Gt~edl~~ 95 (424)
-++|++.. .+ .++..|||++|+++| +|||+||||+||||||++++. +|||+++||++|+ |+|||++|||+
T Consensus 242 ~~iYe~hv-~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~-~~~Gt~~dfk~ 319 (726)
T PRK05402 242 ISIYEVHL-GSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPT-SRFGTPDDFRY 319 (726)
T ss_pred cEEEEEeh-hhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcC-cccCCHHHHHH
Confidence 48998875 22 223358999999996 999999999999999999774 7999999999999 99999999999
Q ss_pred HHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCC
Q 014447 96 LIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHL 175 (424)
Q Consensus 96 Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~ 175 (424)
||++||++||+||||+|+||++.++.. +..|.+ ++ .+. . .+. ..+. ...|. ..+||++
T Consensus 320 lV~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~-~~----~y~-~---~~~-----~~~~---~~~w~-~~~~n~~ 377 (726)
T PRK05402 320 FVDACHQAGIGVILDWVPAHFPKDAHG----LARFDG-TA----LYE-H---ADP-----REGE---HPDWG-TLIFNYG 377 (726)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCccc----hhccCC-Cc----cee-c---cCC-----cCCc---cCCCC-CccccCC
Confidence 999999999999999999999876431 111111 00 000 0 000 0000 01111 2368999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEecccCCC------------------------CHHHHHHH---HHhcCC-CeEEee
Q 014447 176 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITKVY---MENTSP-DFAVGE 227 (424)
Q Consensus 176 np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~------------------------~~~~~~~~---~~~~~p-~~~v~E 227 (424)
||+||++|++++++|++++||||||+|++.++ +.+||+++ +++.+| +++|||
T Consensus 378 ~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE 457 (726)
T PRK05402 378 RNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAE 457 (726)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 99999999999999999999999999987654 24688888 556677 779999
Q ss_pred ecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh-cchhhhhhhhcCCCCCCcCcCCCcceecc
Q 014447 228 KWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAVTFI 306 (424)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 306 (424)
...... ....+.. ....+++..+++...+.+...+ .....+................. ..+++
T Consensus 458 ~~~~~~--~~~~~~~-------------~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~l~ 521 (726)
T PRK05402 458 ESTAWP--GVTRPTE-------------EGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFSLLYAYSE-NFVLP 521 (726)
T ss_pred CCCCCc--Ccccccc-------------CCCCCCCceecCCcchHHHHHHhhCcccccccccchhHHHhHhhhc-cccCC
Confidence 653211 0000000 0001223333333322222221 11110000000000000000011 13577
Q ss_pred cCCCCCcC-----cccCCCC----chhHHHHHHHHHcCCCeeEEecCCCC------------Cc---------chHHHHH
Q 014447 307 DNHDTGST-----QRLWPFP----SDKVMLGYAYILTHPGTPCIFYDHFF------------DW---------GLKEAIS 356 (424)
Q Consensus 307 ~nHD~~r~-----~~~~~~~----~~~~~~a~a~~l~~pG~P~iyyG~~~------------~w---------~l~~~~~ 356 (424)
+|||+.+. ......+ .+++|+++++++|+||+||||||+|+ +| ++.+++|
T Consensus 522 ~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k 601 (726)
T PRK05402 522 LSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREWNHDASLDWHLLDFPWHRGVQRLVR 601 (726)
T ss_pred CCCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCCCccCcCCccccCCcchHHHHHHHH
Confidence 89999642 2222212 24688999999999999999999964 46 3888999
Q ss_pred HHHHHHHhcCCCCCC-----CeEEEec---CCCEEEEEEC-----CEEEEEECCCCC------CCCcCCCCcEEEEeCCc
Q 014447 357 KLAAVRNRNGINTAS-----RVNILAS---DADVYIAAIG-----DRVIMKIGPKMD------IGNLIPSDFKVAADGTD 417 (424)
Q Consensus 357 ~L~~lR~~~~al~~G-----~~~~~~~---~~~v~~~~r~-----~~~lv~ln~~~~------~~~~~~~~~~~~~~~~~ 417 (424)
+|++||+++|+|+.| .++++.. ++.|++|.|. ++++||+|.+.. ++-...+.|+..++.+.
T Consensus 602 ~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlvv~N~~~~~~~~y~i~~p~~g~~~~ilnsd~ 681 (726)
T PRK05402 602 DLNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLVVCNFTPVPRHDYRLGVPQAGRWREVLNTDA 681 (726)
T ss_pred HHHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEEEEeCCCCcccceEECCCCCCeEEEEEcCcc
Confidence 999999999999754 4566643 4579999993 578999998642 12112357777777664
|
|
| >TIGR02100 glgX_debranch glycogen debranching enzyme GlgX | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-49 Score=409.23 Aligned_cols=359 Identities=20% Similarity=0.319 Sum_probs=238.5
Q ss_pred CCceEEEeecCCCC-------CCCCCcHHHHHhh--hhHHHHcCCCEEEeCCCCCCC-----------CCCCCCcccccC
Q 014447 22 SPALLFQGFNWESS-------NKAGGWYNSLKNS--IPDLSNAGITHVWLPPPSQSV-----------APQGYMPGRLYD 81 (424)
Q Consensus 22 ~~~v~~~~f~~ds~-------~~~~G~~~gi~~~--L~ylk~lGv~~I~l~Pi~~~~-----------~~~gY~~~d~~~ 81 (424)
.+.|||++..-+-. .+..|||+||+++ |+|||+||||+||||||++++ ++|||++.||++
T Consensus 154 ~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a 233 (688)
T TIGR02100 154 EDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFA 233 (688)
T ss_pred cccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccc
Confidence 34699998852211 1247999999995 999999999999999999864 369999999999
Q ss_pred CCCCCC---CCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCC
Q 014447 82 LDASKY---GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158 (424)
Q Consensus 82 id~~~~---Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 158 (424)
|| ++| |+.+|||+||++||++||+||||+|+||++.++.... ...+.+- ....|+... ..+...|.
T Consensus 234 ~d-~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~--~~~~~~~---d~~~yy~~~-~~~~~~~~---- 302 (688)
T TIGR02100 234 PE-PRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGP--TLSFRGI---DNASYYRLQ-PDDKRYYI---- 302 (688)
T ss_pred cC-hhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCC--cccccCC---CCCcceEec-CCCCceec----
Confidence 99 999 6799999999999999999999999999997653211 0111110 001111000 00001111
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH---------HHHHHHHHh-cCC-CeEEee
Q 014447 159 NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP---------SITKVYMEN-TSP-DFAVGE 227 (424)
Q Consensus 159 ~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~---------~~~~~~~~~-~~p-~~~v~E 227 (424)
......++||+++|.||++|++++++|++++||||||+|++..+.. +|++++.+. ..| +++|||
T Consensus 303 -----~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d~~~~~~~ligE 377 (688)
T TIGR02100 303 -----NDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQDPVLAQVKLIAE 377 (688)
T ss_pred -----CCCCccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhCcccCCeEEEEe
Confidence 1223346899999999999999999999889999999999998753 577777442 345 679999
Q ss_pred ecCCCC--CCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch---hhhhhhhcCCCCCC---cCcCC
Q 014447 228 KWDSLS--YGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLKDSNGKPPGF---IGILP 299 (424)
Q Consensus 228 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~ 299 (424)
.|.... +.... .......++..++..++..+.|+ ...+.......... ....|
T Consensus 378 ~W~~~~~~~~~~~-------------------~~~~~~~~Nd~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~~~~~~~ 438 (688)
T TIGR02100 378 PWDIGPGGYQVGN-------------------FPPGWAEWNDRYRDDMRRFWRGDAGMIGELANRLTGSSDLFEHNGRRP 438 (688)
T ss_pred eecCCCCcccccC-------------------CCCceEEecHHHHHHHHHHHcCCCCcHHHHHHHHhCCHhhccccCCCc
Confidence 996532 11000 00112345555555555554432 11222221110000 11235
Q ss_pred CcceecccCCCCCcCcccCCC-------------------------------C-------chhHHHHHHHHHcCCCeeEE
Q 014447 300 QNAVTFIDNHDTGSTQRLWPF-------------------------------P-------SDKVMLGYAYILTHPGTPCI 341 (424)
Q Consensus 300 ~~~~~f~~nHD~~r~~~~~~~-------------------------------~-------~~~~~~a~a~~l~~pG~P~i 341 (424)
...+||+++||+-++...+.+ + .+++|++++++|++||+|||
T Consensus 439 ~~~iNyv~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i 518 (688)
T TIGR02100 439 WASINFVTAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPML 518 (688)
T ss_pred CEEEEEEeCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 678999999999553221000 0 23678999999999999999
Q ss_pred ecCCCC--------------------Cc-------chHHHHHHHHHHHHhcCCCCCCCe-------------EEEec---
Q 014447 342 FYDHFF--------------------DW-------GLKEAISKLAAVRNRNGINTASRV-------------NILAS--- 378 (424)
Q Consensus 342 yyG~~~--------------------~w-------~l~~~~~~L~~lR~~~~al~~G~~-------------~~~~~--- 378 (424)
|||||+ +| ++.+++|+||+|||++|+|+.+.+ +++..
T Consensus 519 ~~GdE~g~t~~G~~n~y~~~~~~~~~dW~~~~~~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~~~~v~~~~~~G~ 598 (688)
T TIGR02100 519 LAGDEFGRTQQGNNNAYCQDNEIGWVDWSLDEGDDELLAFTKKLIALRKAHPVLRRERFFDGRNEADGLKDVTWLNADGE 598 (688)
T ss_pred eecHhhccCCCCCCCCccCCCcccccCcccccccHHHHHHHHHHHHHHHhCchhcccccccCCcccCCCCceEEeCCCCC
Confidence 999864 35 489999999999999999977643 33321
Q ss_pred ----------CCCEEEEEEC-----------CEEEEEECCCCC-CCCcCC---CCcEEEEeC
Q 014447 379 ----------DADVYIAAIG-----------DRVIMKIGPKMD-IGNLIP---SDFKVAADG 415 (424)
Q Consensus 379 ----------~~~v~~~~r~-----------~~~lv~ln~~~~-~~~~~~---~~~~~~~~~ 415 (424)
...+++|... +.++|++|.+.+ .....| ..|+++++.
T Consensus 599 ~~~~~~w~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~~~~~w~~~~dt 660 (688)
T TIGR02100 599 PMTEEDWENPETRLLCMVLSDMDPGGDPGADDSLLLLLNAGPEPVPFKLPGGGGRWELVLDT 660 (688)
T ss_pred cCChhhcCCCCCCEEEEEEeCCccCCCCCCCCeEEEEECCCCCCeEEECCCCCCcEEEEecC
Confidence 2367887741 368999998643 111112 268877665
|
This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. |
| >TIGR03852 sucrose_gtfA sucrose phosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-48 Score=380.95 Aligned_cols=337 Identities=17% Similarity=0.210 Sum_probs=247.9
Q ss_pred CceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHH
Q 014447 23 PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQ 102 (424)
Q Consensus 23 ~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~ 102 (424)
+.|++.+|. ||.+++.|||+|++++ ||++ ||++|||+|++++++++||++.||++|| |+|||++||++|+++
T Consensus 1 n~v~lity~-Ds~g~glgdl~g~l~~--yL~~-~v~~i~LlPffps~sD~GYdv~DY~~VD-P~~Gt~~Df~~L~~~--- 72 (470)
T TIGR03852 1 NKAMLITYA-DSLGKNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTGDRGFAPMDYTEVD-PAFGDWSDVEALSEK--- 72 (470)
T ss_pred CCceEEEec-CCCCCChhhHHHHHHH--HHHH-hCCEEEECCCCcCCCCCCcCchhhceeC-cccCCHHHHHHHHHh---
Confidence 368899998 9999999999999999 9999 7999999999999999999999999999 999999999999987
Q ss_pred cCCEEEEeeecccCCCCCC-----------CCCcceee-----cCCCCCCCCCCCCCcccccC-----CCccCCCCCCCC
Q 014447 103 KGIKCLADMVINHRTAERK-----------DGRGIYCI-----FEGGTSDDRLDWGPSFICRG-----DKEYSDGQGNDD 161 (424)
Q Consensus 103 ~Gi~VilD~v~NH~~~~~~-----------~~~~~~~~-----~~~~~~~~~~~w~~~~~~~~-----~~~~~~~~~~~~ 161 (424)
||||+|+|+||||.+|+ ++..+|+. |+++.+ ...++...+.... ...+.++...++
T Consensus 73 --~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~-~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~ 149 (470)
T TIGR03852 73 --YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRP-TQEDVDLIYKRKDRAPYQEVTFADGSTEKV 149 (470)
T ss_pred --hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCc-cccccccccCCCCCCCCCceEEcCCCCeEE
Confidence 89999999999999885 12334554 222110 0011111111111 123444556788
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC-----------HH---HHHHHHH-hcCC-CeEE
Q 014447 162 TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-----------PS---ITKVYME-NTSP-DFAV 225 (424)
Q Consensus 162 ~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~-----------~~---~~~~~~~-~~~p-~~~v 225 (424)
++.|.+.+||||++||.|++++.+++++|++ .||||||+||+.++. ++ +++.+.+ ...| ++++
T Consensus 150 w~tF~~~QpDLN~~np~v~e~i~~il~fwl~-~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll 228 (470)
T TIGR03852 150 WNTFGEEQIDLDVTSETTKRFIRDNLENLAE-HGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEIL 228 (470)
T ss_pred EccCCccccccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEE
Confidence 8899999999999999999999999999997 999999999995442 33 3444433 1234 7899
Q ss_pred eeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh-cchhhhhhhhcCCCCCCcCcCCCccee
Q 014447 226 GEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAVT 304 (424)
Q Consensus 226 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (424)
+|++...++. + ....+..++|+|++...+..++ .++...+....... |...++
T Consensus 229 ~E~~~~~~~~------------------~-~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~~~-------p~~~~n 282 (470)
T TIGR03852 229 PEIHEHYTIQ------------------F-KIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLRKS-------PMKQFT 282 (470)
T ss_pred eHhhhhcccc------------------c-ccccceeEEccCccchhhHHHhhccCHHHHHHHHHhC-------cccceE
Confidence 9997432210 0 1013677889999987766554 66666666655432 333479
Q ss_pred cccCCCCC--------------------------cCc---------------------ccCCCCchhHHHHHHHHHcCCC
Q 014447 305 FIDNHDTG--------------------------STQ---------------------RLWPFPSDKVMLGYAYILTHPG 337 (424)
Q Consensus 305 f~~nHD~~--------------------------r~~---------------------~~~~~~~~~~~~a~a~~l~~pG 337 (424)
|++|||.= +.. +.++.+.+++.+|.|++|++||
T Consensus 283 fL~sHDgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpG 362 (470)
T TIGR03852 283 TLDTHDGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPG 362 (470)
T ss_pred EeecCCCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCC
Confidence 99999991 000 0111245688999999999999
Q ss_pred eeEEecCCCCCc--------------------------------chHHHHHHHHHHHHhcCCCCC-CCeEEEecCCCEEE
Q 014447 338 TPCIFYDHFFDW--------------------------------GLKEAISKLAAVRNRNGINTA-SRVNILASDADVYI 384 (424)
Q Consensus 338 ~P~iyyG~~~~w--------------------------------~l~~~~~~L~~lR~~~~al~~-G~~~~~~~~~~v~~ 384 (424)
+|.||||++++- .....+.+|+++|+++||+.. |.++....++.+++
T Consensus 363 iP~iYy~~llg~~nD~~~~~rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~~~~~~~~~~~ 442 (470)
T TIGR03852 363 IPQVYYVGLLAGKNDIELLEETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSIDIETPSENQIE 442 (470)
T ss_pred CceEEechhhcCCchHHHHHhcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceEecCCCCcEEE
Confidence 999999986542 245556668999999999976 88887778889999
Q ss_pred EEE-----CCEEEEEECC
Q 014447 385 AAI-----GDRVIMKIGP 397 (424)
Q Consensus 385 ~~r-----~~~~lv~ln~ 397 (424)
+.| ++++++.+|-
T Consensus 443 ~~r~~~~~~~~~~~~~n~ 460 (470)
T TIGR03852 443 IVRTNKDGGNKAILTANL 460 (470)
T ss_pred EEEEcCCCCceEEEEEec
Confidence 987 2356666665
|
In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism. |
| >PRK03705 glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=396.79 Aligned_cols=354 Identities=20% Similarity=0.276 Sum_probs=230.5
Q ss_pred CCceEEEeecCCC-------CCCCCCcHHHHHh--hhhHHHHcCCCEEEeCCCCCCC-----------CCCCCCcccccC
Q 014447 22 SPALLFQGFNWES-------SNKAGGWYNSLKN--SIPDLSNAGITHVWLPPPSQSV-----------APQGYMPGRLYD 81 (424)
Q Consensus 22 ~~~v~~~~f~~ds-------~~~~~G~~~gi~~--~L~ylk~lGv~~I~l~Pi~~~~-----------~~~gY~~~d~~~ 81 (424)
.+.|||++...+- ..+..|+|.++++ +|+|||+||||+||||||++++ ++|||++.||++
T Consensus 149 ~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa 228 (658)
T PRK03705 149 GSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFA 228 (658)
T ss_pred cccEEEEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccc
Confidence 3469998885221 1234699999997 4999999999999999999853 469999999999
Q ss_pred CCCCCCCCH-----HHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCC
Q 014447 82 LDASKYGSQ-----ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDG 156 (424)
Q Consensus 82 id~~~~Gt~-----edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 156 (424)
|| ++|||. +|||+||++||++||+||||+|+|||+..+.. +.+..+.+-. ...|+ +.. .
T Consensus 229 ~d-~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~--~~~~~~~~~d---~~~yy---~~~-------~ 292 (658)
T PRK03705 229 LD-PAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELDLD--GPTLSLRGID---NRSYY---WIR-------E 292 (658)
T ss_pred cc-cccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCC--CcchhcccCC---Cccce---EEC-------C
Confidence 99 999995 79999999999999999999999999864321 1111111100 01111 001 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC--HHHHHH--HHHh-----cCC-CeEEe
Q 014447 157 QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA--PSITKV--YMEN-----TSP-DFAVG 226 (424)
Q Consensus 157 ~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~--~~~~~~--~~~~-----~~p-~~~v~ 226 (424)
.+.+.. .....++||+++|.|+++|++++++|++++||||||+|++..+. ++|++. ++++ +.+ +.++|
T Consensus 293 ~g~~~~--~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~d~vl~~~~lig 370 (658)
T PRK03705 293 DGDYHN--WTGCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQNDPVLSQVKLIA 370 (658)
T ss_pred CCCcCC--CCCccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhhCccccceEEEE
Confidence 111111 12234689999999999999999999999999999999999886 234432 2222 234 66999
Q ss_pred eecCCCC--CCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc-h--h----hhhhhhcCCCCCCcCc
Q 014447 227 EKWDSLS--YGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-E--L----WRLKDSNGKPPGFIGI 297 (424)
Q Consensus 227 E~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~-~--~----~~~~~~~~~~~~~~~~ 297 (424)
|.|.... +..... ......|+..++..++..+.+ + . .++.......+ ....
T Consensus 371 E~Wd~~~~~~~~g~~-------------------~~~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~-~~~~ 430 (658)
T PRK03705 371 EPWDIGPGGYQVGNF-------------------PPPFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFK-RNGR 430 (658)
T ss_pred ecccCCCChhhhcCC-------------------CcceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhcc-ccCC
Confidence 9996532 110000 011223444444444443311 1 1 11111110000 0112
Q ss_pred CCCcceecccCCCCCcCcccCCC--------------------------------------CchhHHHHHHHHHcCCCee
Q 014447 298 LPQNAVTFIDNHDTGSTQRLWPF--------------------------------------PSDKVMLGYAYILTHPGTP 339 (424)
Q Consensus 298 ~~~~~~~f~~nHD~~r~~~~~~~--------------------------------------~~~~~~~a~a~~l~~pG~P 339 (424)
.|...+||+++||+-++.....+ ..++.|+|++++|+++|+|
T Consensus 431 ~p~~siNyv~~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P 510 (658)
T PRK03705 431 LPSASINLVTAHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTP 510 (658)
T ss_pred CCCeEEEEEEeCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 46788999999998433211100 0135688999999999999
Q ss_pred EEecCCCC--------------------Cc-----chHHHHHHHHHHHHhcCCCCCCCe--------EEEecC-------
Q 014447 340 CIFYDHFF--------------------DW-----GLKEAISKLAAVRNRNGINTASRV--------NILASD------- 379 (424)
Q Consensus 340 ~iyyG~~~--------------------~w-----~l~~~~~~L~~lR~~~~al~~G~~--------~~~~~~------- 379 (424)
|||+|||+ +| ++.+|+|+||+|||++|+|+...+ +++..+
T Consensus 511 ~i~~GdE~grtq~G~nN~y~~~~~i~~~dW~~~~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 590 (658)
T PRK03705 511 MLLAGDEHGHSQHGNNNAYCQDNALTWLDWSQADRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSAD 590 (658)
T ss_pred HHHhhHHhccCCCCCCCCccCCCCccccccchhhhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChh
Confidence 99999964 35 499999999999999999965443 343322
Q ss_pred -----CCEEEEEECCEEEEEECCCCC-CC-CcCCCCcEEEE
Q 014447 380 -----ADVYIAAIGDRVIMKIGPKMD-IG-NLIPSDFKVAA 413 (424)
Q Consensus 380 -----~~v~~~~r~~~~lv~ln~~~~-~~-~~~~~~~~~~~ 413 (424)
...+++...++++|++|...+ .. ..++..|++.+
T Consensus 591 ~w~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lp~~~w~~~~ 631 (658)
T PRK03705 591 EWQQGPKQLQILLSDRWLIAINATLEVTEIVLPEGEWHAIP 631 (658)
T ss_pred HhCCcceEEEEEECCCEEEEECCCCCCeEEECCCcceEEEE
Confidence 244666667789999998643 11 12224788774
|
|
| >PRK13840 sucrose phosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-47 Score=374.89 Aligned_cols=328 Identities=16% Similarity=0.136 Sum_probs=241.1
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhh-HHHHcCCCEEEeCCCCC-CCC-CCCCCcccccCCCCCCCCCHHHHHHHHH
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIP-DLSNAGITHVWLPPPSQ-SVA-PQGYMPGRLYDLDASKYGSQADLKSLIQ 98 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~-ylk~lGv~~I~l~Pi~~-~~~-~~gY~~~d~~~id~~~~Gt~edl~~Lv~ 98 (424)
++.|++.+|. ||.++ |||+||+++|| ||++| |++|||+|+++ ++. ++||++.||++|| |+|||++||++|++
T Consensus 2 ~n~~~litY~-Ds~~~--GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VD-P~fGt~eDf~~L~~ 76 (495)
T PRK13840 2 KNKVQLITYA-DRLGD--GGLKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVD-PRLGDWDDVKALGK 76 (495)
T ss_pred CCceEEEEec-cCCCC--CCHhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcC-cccCCHHHHHHHHh
Confidence 5789999998 99874 89999999999 59999 99999999994 554 7999999999999 99999999999984
Q ss_pred HHHHcCCEEEEeeecccCCCCCCC-----------CCcceeecCCC-CC--CCCCCCCCcccccCCC-----ccCCCCCC
Q 014447 99 AFRQKGIKCLADMVINHRTAERKD-----------GRGIYCIFEGG-TS--DDRLDWGPSFICRGDK-----EYSDGQGN 159 (424)
Q Consensus 99 ~aH~~Gi~VilD~v~NH~~~~~~~-----------~~~~~~~~~~~-~~--~~~~~w~~~~~~~~~~-----~~~~~~~~ 159 (424)
||+||+|+|+||||.+|+. +..+|+.+.+. .+ ..+.+|...+...+.. .+.++...
T Consensus 77 -----giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~ 151 (495)
T PRK13840 77 -----THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTR 151 (495)
T ss_pred -----CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCce
Confidence 9999999999999999862 23455554331 11 1223343333222222 23445556
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC-------------HHHHHHHHHhcC--CCeE
Q 014447 160 DDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------PSITKVYMENTS--PDFA 224 (424)
Q Consensus 160 ~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~-------------~~~~~~~~~~~~--p~~~ 224 (424)
+.++.+.+.|||||++||+|+++|.+++++|++ .||||||+||+.++. .+|++++-+..+ ...+
T Consensus 152 ~~w~tF~~~QpDLN~~NP~V~~~i~~il~fwl~-~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~l 230 (495)
T PRK13840 152 LVWTTFTPQQIDIDVHSAAGWEYLMSILDRFAA-SHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEV 230 (495)
T ss_pred EEeccCCcccceeCCCCHHHHHHHHHHHHHHHH-CCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEE
Confidence 677778899999999999999999999999998 999999999997543 246766632222 3557
Q ss_pred EeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh-cchhhhhhhhcCCCCCCcCcCCCcce
Q 014447 225 VGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAV 303 (424)
Q Consensus 225 v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (424)
|+|++..... ......+..++|+|++...+..++ .++...+....... |.+.+
T Consensus 231 l~Ei~~y~~~-------------------~~~~~~e~~~vYnF~Lp~ll~~aL~~~~~~~L~~~l~~~-------p~~~~ 284 (495)
T PRK13840 231 LVEIHSYYKT-------------------QIEIAKKVDRVYDFALPPLILHTLFTGDVEALAHWLEIR-------PRNAV 284 (495)
T ss_pred EEeCccccCc-------------------cccccccccEEecchhhHHHHHHHHhCCchHHHHHHHhC-------CCccE
Confidence 8998742110 000013688899999988777665 66655555544321 44457
Q ss_pred ecccCCCCCcC----------cccC--------------------------------------------CCCchhHHHHH
Q 014447 304 TFIDNHDTGST----------QRLW--------------------------------------------PFPSDKVMLGY 329 (424)
Q Consensus 304 ~f~~nHD~~r~----------~~~~--------------------------------------------~~~~~~~~~a~ 329 (424)
+|++|||.-.+ ..+. +.+.+++.+|.
T Consensus 285 n~L~~HDgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ 364 (495)
T PRK13840 285 TVLDTHDGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAAR 364 (495)
T ss_pred EeeecCCCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHH
Confidence 99999998443 1100 01234788999
Q ss_pred HHHHcCCCeeEEecCCCCC-----------------------c---------chHHHHHHHHHHHHhcCCCCCCCeEEEe
Q 014447 330 AYILTHPGTPCIFYDHFFD-----------------------W---------GLKEAISKLAAVRNRNGINTASRVNILA 377 (424)
Q Consensus 330 a~~l~~pG~P~iyyG~~~~-----------------------w---------~l~~~~~~L~~lR~~~~al~~G~~~~~~ 377 (424)
+++|++||||.||||++++ | .+.+.+++|+++|+++||+ .|.+++..
T Consensus 365 ai~~~~~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF-~~~~~~~~ 443 (495)
T PRK13840 365 AIQFFAPGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAF-DGAFSYAA 443 (495)
T ss_pred HHHHcCCCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CceEEEec
Confidence 9999999999999998643 2 2677789999999999999 48888765
Q ss_pred cCCCEEEEEE
Q 014447 378 SDADVYIAAI 387 (424)
Q Consensus 378 ~~~~v~~~~r 387 (424)
.++..+...+
T Consensus 444 ~~~~~~~~~~ 453 (495)
T PRK13840 444 DGDTSLTLSW 453 (495)
T ss_pred CCCCeEEEEE
Confidence 6666666665
|
|
| >PRK12568 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=386.42 Aligned_cols=355 Identities=17% Similarity=0.205 Sum_probs=235.4
Q ss_pred ceEEEeec--CCC-CCCCCCcHHHHHhh-hhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHH
Q 014447 24 ALLFQGFN--WES-SNKAGGWYNSLKNS-IPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLI 97 (424)
Q Consensus 24 ~v~~~~f~--~ds-~~~~~G~~~gi~~~-L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv 97 (424)
-+||++-. |.. .....+++++++++ |+|||+||||+||||||++++ .+|||++++|++++ ++|||.+|||+||
T Consensus 247 ~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~-~~~G~~~dfk~lV 325 (730)
T PRK12568 247 LSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPT-ARHGSPDGFAQFV 325 (730)
T ss_pred cEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccC-cccCCHHHHHHHH
Confidence 47887663 322 22235799999998 599999999999999999987 47999999999999 9999999999999
Q ss_pred HHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCH
Q 014447 98 QAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP 177 (424)
Q Consensus 98 ~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np 177 (424)
++||++||+||||+|+||++.+... +..|.+.. .|. . . +.. ......|..+ .||+.+|
T Consensus 326 ~~~H~~Gi~VIlD~V~nH~~~d~~~----l~~fdg~~-----~Ye-~---~------d~~--~g~~~~W~~~-~~N~~~p 383 (730)
T PRK12568 326 DACHRAGIGVILDWVSAHFPDDAHG----LAQFDGAA-----LYE-H---A------DPR--EGMHRDWNTL-IYNYGRP 383 (730)
T ss_pred HHHHHCCCEEEEEeccccCCccccc----cccCCCcc-----ccc-c---C------CCc--CCccCCCCCe-ecccCCH
Confidence 9999999999999999999876421 11122100 000 0 0 000 0011123332 5899999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEecccCCC------------------------CHHHHHHH---HHhcCC-CeEEeeec
Q 014447 178 RVQKELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITKVY---MENTSP-DFAVGEKW 229 (424)
Q Consensus 178 ~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~------------------------~~~~~~~~---~~~~~p-~~~v~E~~ 229 (424)
+||++|++++++|++++||||||+|+++.| +.+||+++ +++.+| +++|||..
T Consensus 384 eVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEes 463 (730)
T PRK12568 384 EVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEES 463 (730)
T ss_pred HHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcC
Confidence 999999999999999999999999998654 13588887 566678 78999975
Q ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc-hhhhhhhhcCCCCCCcCcCCCcceecccC
Q 014447 230 DSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFIDN 308 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~n 308 (424)
..-+ ....+. ..+.-+++..+++...+.....++. .+.+-........++... -...+.+..|
T Consensus 464 t~~p--~vt~p~-------------~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~ltf~~~y~-~~e~fvlp~S 527 (730)
T PRK12568 464 TAWP--GVTAPI-------------SDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQLTFGLVYA-FSERFVLPLS 527 (730)
T ss_pred CCCc--cccccc-------------cCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhhhhhhhhh-hhccEeccCC
Confidence 3211 000010 0111245555666655555544433 222221111000111110 1222457899
Q ss_pred CCCCc-----CcccCCCCc----hhHHHHHHHHHcCCCeeEEecCCCC------------Cc---------chHHHHHHH
Q 014447 309 HDTGS-----TQRLWPFPS----DKVMLGYAYILTHPGTPCIFYDHFF------------DW---------GLKEAISKL 358 (424)
Q Consensus 309 HD~~r-----~~~~~~~~~----~~~~~a~a~~l~~pG~P~iyyG~~~------------~w---------~l~~~~~~L 358 (424)
||+.- +...+..+. +.+|.++++|++.||.|+||||+|+ +| ++..++|+|
T Consensus 528 HDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~~~~ldW~ll~~~~h~~~~~~~~dL 607 (730)
T PRK12568 528 HDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNHDQSLDWHLLDGARHRGMQQLVGDL 607 (730)
T ss_pred CcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccCCCCccccccCChhHHHHHHHHHHH
Confidence 99942 222222221 3678899999999999999999875 35 377899999
Q ss_pred HHHHHhcCCCCC-----CCeEEEec---CCCEEEEEEC------CEEEEEECCCCC------CCCcCCCCcEEEEeCCc
Q 014447 359 AAVRNRNGINTA-----SRVNILAS---DADVYIAAIG------DRVIMKIGPKMD------IGNLIPSDFKVAADGTD 417 (424)
Q Consensus 359 ~~lR~~~~al~~-----G~~~~~~~---~~~v~~~~r~------~~~lv~ln~~~~------~~~~~~~~~~~~~~~~~ 417 (424)
++||+++|+|.. ..++|+.. +++|++|.|. ..++||+|-+.. +|-..++.|+..++.+.
T Consensus 608 n~ly~~~paL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~~~~~~Y~ig~p~~G~~~eilNsd~ 686 (730)
T PRK12568 608 NAALRRTPALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTPQPHHDYRVGVPRAGGWREILNTDS 686 (730)
T ss_pred HHHHHhChhhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCCCCccCeEECCCCCCeEEEEEcCch
Confidence 999999999943 45777754 4479999992 237777776321 33333456666666543
|
|
| >PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-47 Score=414.57 Aligned_cols=320 Identities=17% Similarity=0.211 Sum_probs=215.6
Q ss_pred CceEEEeecCCC---C----CCCCCcHHHHH--hhhhHHHHcCCCEEEeCCCCCCC-----------CCCCCCcccccCC
Q 014447 23 PALLFQGFNWES---S----NKAGGWYNSLK--NSIPDLSNAGITHVWLPPPSQSV-----------APQGYMPGRLYDL 82 (424)
Q Consensus 23 ~~v~~~~f~~ds---~----~~~~G~~~gi~--~~L~ylk~lGv~~I~l~Pi~~~~-----------~~~gY~~~d~~~i 82 (424)
+.++|++..-+. . ++..|++.+|. ++|+|||+||||+||||||++++ +||||++.||++|
T Consensus 158 d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~ 237 (1221)
T PRK14510 158 DSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAP 237 (1221)
T ss_pred cCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCc
Confidence 468897664111 1 12245666666 45669999999999999999864 3689999999999
Q ss_pred CCCCCC--CHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCC
Q 014447 83 DASKYG--SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160 (424)
Q Consensus 83 d~~~~G--t~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 160 (424)
| |+|| +.+|||+||++||++||+||||+|+|||+.++... ....+.+. ....|+.. .. +....+
T Consensus 238 d-p~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~--p~~~~~~~---d~~~yy~~---~~-----~~~~~y 303 (1221)
T PRK14510 238 D-PRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYG--PTLSAYGS---DNSPYYRL---EP-----GNPKEY 303 (1221)
T ss_pred C-hhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCC--CcccccCC---CCCCceEe---cC-----CCCCcc
Confidence 9 9999 99999999999999999999999999999875421 00001100 00011100 00 000111
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC---CHHHHHHH---HHhcCC-CeE-----Eeee
Q 014447 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY---APSITKVY---MENTSP-DFA-----VGEK 228 (424)
Q Consensus 161 ~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~---~~~~~~~~---~~~~~p-~~~-----v~E~ 228 (424)
..+..... .+|+++|.|++++++++++|++ +||||||+|+|..+ +.+||+.+ +++++| .++ |||.
T Consensus 304 ~~~~G~gn--~~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l~~~~ligE~ 380 (1221)
T PRK14510 304 ENWWGCGN--LPNLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVLRRLKMIAEV 380 (1221)
T ss_pred cCCCCCCC--ccccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCcccCcEEEec
Confidence 11111222 3577799999999999999999 99999999999999 88898876 666665 444 9999
Q ss_pred cCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcchh---hhhhhhcCCCCCCc---CcCCCcc
Q 014447 229 WDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGEL---WRLKDSNGKPPGFI---GILPQNA 302 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~ 302 (424)
|...+. .|..+.+. .....+++.++..++..+.|+. ..+........... ...+...
T Consensus 381 Wd~~~~------~~~~g~f~-----------~~~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~~~~~~~~~~ 443 (1221)
T PRK14510 381 WDDGLG------GYQYGKFP-----------QYWGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFPHRRRNFSRS 443 (1221)
T ss_pred ccCCCC------ccccCCCC-----------cceeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcCccCCCcccc
Confidence 975321 11100000 0123466677777766665431 12222111101110 1235667
Q ss_pred eecccCCCCCcCcccCCC--------------------------------------CchhHHHHHHHHHcCCCeeEEecC
Q 014447 303 VTFIDNHDTGSTQRLWPF--------------------------------------PSDKVMLGYAYILTHPGTPCIFYD 344 (424)
Q Consensus 303 ~~f~~nHD~~r~~~~~~~--------------------------------------~~~~~~~a~a~~l~~pG~P~iyyG 344 (424)
+||++|||+.|+.....+ ..+++++|++++|++||+||||||
T Consensus 444 iNfi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy~G 523 (1221)
T PRK14510 444 INFITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLYYG 523 (1221)
T ss_pred eEEEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEecc
Confidence 999999999876443221 023578999999999999999999
Q ss_pred CCCC--------------------c-----chHHHHHHHHHHHHhcCCCCCCCeEEE
Q 014447 345 HFFD--------------------W-----GLKEAISKLAAVRNRNGINTASRVNIL 376 (424)
Q Consensus 345 ~~~~--------------------w-----~l~~~~~~L~~lR~~~~al~~G~~~~~ 376 (424)
||++ | ++++++|+|++|||++|+|+.|.+...
T Consensus 524 dE~g~tq~Gn~n~y~~~~~r~~~~W~~~~~~l~~f~k~Li~lRk~~~~L~~g~~~~~ 580 (1221)
T PRK14510 524 DEAGRSQNGNNNGYAQDNNRGTYPWGNEDEELLSFFRRLIKLRREYGVLRQGEFSSG 580 (1221)
T ss_pred hhcccccCCCCCCCCCCCccccCCcccccHHHHHHHHHHHHHHHhChhhccCccccC
Confidence 9864 4 499999999999999999999887654
|
|
| >PRK14705 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=393.61 Aligned_cols=354 Identities=17% Similarity=0.179 Sum_probs=228.8
Q ss_pred ceEEEeecCCCCCCCCCcHHHHHhh-hhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHH
Q 014447 24 ALLFQGFNWESSNKAGGWYNSLKNS-IPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAF 100 (424)
Q Consensus 24 ~v~~~~f~~ds~~~~~G~~~gi~~~-L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~a 100 (424)
-+||++.. .++.+ +|+|++++++ |+|||+||||+||||||++++ .+|||++++|++++ ++|||++|||+||++|
T Consensus 748 ~~IYEvHv-gsf~~-~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~-~ryGt~~dfk~lVd~~ 824 (1224)
T PRK14705 748 MSVYEVHL-GSWRL-GLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPT-SRFGHPDEFRFLVDSL 824 (1224)
T ss_pred cEEEEEEe-ccccc-CCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcC-cccCCHHHHHHHHHHH
Confidence 48888875 44444 5889999998 599999999999999999987 57999999999999 9999999999999999
Q ss_pred HHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 014447 101 RQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180 (424)
Q Consensus 101 H~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~ 180 (424)
|++||+||||+|+||++.+... ...|.+ ++ .+. + .+.. ...+..|.. ..||+++++||
T Consensus 825 H~~GI~VILD~V~nH~~~d~~~----l~~fdg-~~----~y~-~---------~d~~--~g~~~~Wg~-~~fn~~~~eVr 882 (1224)
T PRK14705 825 HQAGIGVLLDWVPAHFPKDSWA----LAQFDG-QP----LYE-H---------ADPA--LGEHPDWGT-LIFDFGRTEVR 882 (1224)
T ss_pred HHCCCEEEEEeccccCCcchhh----hhhcCC-Cc----ccc-c---------CCcc--cCCCCCCCC-ceecCCCHHHH
Confidence 9999999999999999765310 001211 10 000 0 0000 000112322 35999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEecccCCC------------------------CHHHHHHH---HHhcCC-CeEEeeecCCC
Q 014447 181 KELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITKVY---MENTSP-DFAVGEKWDSL 232 (424)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~D~a~~~------------------------~~~~~~~~---~~~~~p-~~~v~E~~~~~ 232 (424)
++|++++++|++++||||||+|+++.| +.+|++++ +++..| +++|||....-
T Consensus 883 ~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~ 962 (1224)
T PRK14705 883 NFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAF 962 (1224)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCC
Confidence 999999999999999999999998776 24688887 445567 78999976531
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh-cchhhhhhhhcCCCCCCcCcCCCcceecccCCCC
Q 014447 233 SYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT 311 (424)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~ 311 (424)
+ .-..+.. .+.-|++..++...++.....+ ...+.+..........+...+ ...+.+..|||+
T Consensus 963 p--~vt~p~~-------------~GGlGFd~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf~~~ya~-~e~fvl~~SHDe 1026 (1224)
T PRK14705 963 P--GVTAPTS-------------HGGLGFGLKWNMGWMHDSLKYASEDPINRKWHHGTITFSLVYAF-TENFLLPISHDE 1026 (1224)
T ss_pred c--Ccccccc-------------CCCccCCcEecchhhHHHHHHhhhCcchhhcccchHHHHHHHHh-hcCEeccccccc
Confidence 1 1011100 0011233333333333222211 222211100000000000000 111345668998
Q ss_pred CcC--cc---cCCCC----chhHHHHHHHHHcCCCeeEEecCCCCC------------c---------chHHHHHHHHHH
Q 014447 312 GST--QR---LWPFP----SDKVMLGYAYILTHPGTPCIFYDHFFD------------W---------GLKEAISKLAAV 361 (424)
Q Consensus 312 ~r~--~~---~~~~~----~~~~~~a~a~~l~~pG~P~iyyG~~~~------------w---------~l~~~~~~L~~l 361 (424)
..- .+ .+..+ ...+|.++++|++.||+|+||||+|++ | .+..++|+|++|
T Consensus 1027 vvhgk~sl~~km~Gd~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew~~~~~LdW~ll~~~~h~~~~~~~rdLn~l 1106 (1224)
T PRK14705 1027 VVHGKGSMLRKMPGDRWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEWSEQHGLDWFLADIPAHRGIQLLTKDLNEL 1106 (1224)
T ss_pred ccccchhHHHhCCCcHHHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCccccccCCCcccCChhhHHHHHHHHHHHHH
Confidence 532 11 11111 135788999999999999999999763 4 277799999999
Q ss_pred HHhcCCCCC-----CCeEEEe---cCCCEEEEEEC----CEEEEEECCCCC------CCCcCCCCcEEEEeCCcE
Q 014447 362 RNRNGINTA-----SRVNILA---SDADVYIAAIG----DRVIMKIGPKMD------IGNLIPSDFKVAADGTDY 418 (424)
Q Consensus 362 R~~~~al~~-----G~~~~~~---~~~~v~~~~r~----~~~lv~ln~~~~------~~~~~~~~~~~~~~~~~~ 418 (424)
|+++|+|.. ..++|+. .++.|++|.|. +.++|++|-+.. +|-...+.|+..++.+..
T Consensus 1107 y~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp~~~~~y~igvp~~G~y~eilnsd~~ 1181 (1224)
T PRK14705 1107 YTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSGGPHKGYTLGVPAAGAWTEVLNTDHE 1181 (1224)
T ss_pred HhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCCCCccCceECCCCCCeEEEEEeCchh
Confidence 999999943 3577774 34679999992 357777776431 222223466666665543
|
|
| >PLN02960 alpha-amylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=370.41 Aligned_cols=356 Identities=15% Similarity=0.188 Sum_probs=224.2
Q ss_pred CCceEEEeecCCCCC-CCCCcHHHHHhh-hhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHH
Q 014447 22 SPALLFQGFNWESSN-KAGGWYNSLKNS-IPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLI 97 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~-~~~G~~~gi~~~-L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv 97 (424)
...+||++..-.+.. .+.|+|++++++ |+|||+||||+||||||++.+ .+|||++++|++|+ ++|||.+|||+||
T Consensus 394 ~~~vIYElHvg~~~~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~-~~yGtp~dfk~LV 472 (897)
T PLN02960 394 KSLRIYECHVGISGSEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVS-SRFGTPDDFKRLV 472 (897)
T ss_pred CCcEEEEEecccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcc-cccCCHHHHHHHH
Confidence 445899888632222 246899999976 999999999999999999876 46999999999999 9999999999999
Q ss_pred HHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCH
Q 014447 98 QAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP 177 (424)
Q Consensus 98 ~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np 177 (424)
++||++||+||||+|+||++.++.... ..|.+ + ..+. +. .+ ..+ + ...| +...||+.+|
T Consensus 473 d~aH~~GI~VILDvV~NH~~~d~~~~L---~~FDG-~----~~~Y--f~-~~------~~g-~--~~~W-G~~~fNy~~~ 531 (897)
T PLN02960 473 DEAHGLGLLVFLDIVHSYAAADEMVGL---SLFDG-S----NDCY--FH-SG------KRG-H--HKRW-GTRMFKYGDH 531 (897)
T ss_pred HHHHHCCCEEEEEecccccCCccccch---hhcCC-C----ccce--ee-cC------CCC-c--cCCC-CCcccCCCCH
Confidence 999999999999999999998752100 01211 1 0000 00 00 000 0 1122 2356999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEecccCCC-------------------------CHHHHHHH---HHhcCC-CeEEeee
Q 014447 178 RVQKELSDWMNWLKTEIGFDGWRFDFVKGY-------------------------APSITKVY---MENTSP-DFAVGEK 228 (424)
Q Consensus 178 ~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~-------------------------~~~~~~~~---~~~~~p-~~~v~E~ 228 (424)
+||++|++++++|++++||||||+|++..| +..|++.+ +++..| +++|||.
T Consensus 532 eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEd 611 (897)
T PLN02960 532 EVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAED 611 (897)
T ss_pred HHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence 999999999999999999999999999653 12355555 444466 7899997
Q ss_pred cCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcchhhh---hhhhcCCCCCCcCcCCCcceec
Q 014447 229 WDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWR---LKDSNGKPPGFIGILPQNAVTF 305 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~f 305 (424)
..+-+ . .. ..--.+.-|++-..++.....+...+.....+ .......... ....+.+.+.|
T Consensus 612 ss~~P--~-----vt--------~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~r~~~~~~l~~s~~~-~~~~~~~~v~Y 675 (897)
T PLN02960 612 ATFYP--G-----LC--------EPTSQGGLGFDYYVNLSPSEMWLSLLENVPDQEWSMSKIVSTLVK-NKENADKMLSY 675 (897)
T ss_pred CCCCC--C-----cc--------ccCCCCCCCcccccCCCcHHHHHHHHHhCcCCCCChhccEeeecc-CcCCcceEEEE
Confidence 64311 0 00 00000001222223333333333333221100 0000000000 01124566899
Q ss_pred ccCCCCCcC-----cccCC---------CCch--------hHHHHHHHHHcCCCeeEEecCCCC----------------
Q 014447 306 IDNHDTGST-----QRLWP---------FPSD--------KVMLGYAYILTHPGTPCIFYDHFF---------------- 347 (424)
Q Consensus 306 ~~nHD~~r~-----~~~~~---------~~~~--------~~~~a~a~~l~~pG~P~iyyG~~~---------------- 347 (424)
.+|||+.-. ...+. .... .+..+++++++ ||+|++|||+|+
T Consensus 676 ~EnHDQVv~Gkrsl~~rL~g~~~~k~~~~~~~~lRa~al~~~~rllt~~~~-Pg~pLlFMG~EFGh~e~~~~PdP~n~~t 754 (897)
T PLN02960 676 AENHNQSISGGKSFAEILLGKNKESSPAVKELLLRGVSLHKMIRLITFTLG-GSAYLNFMGNEFGHPERVEFPRASNNFS 754 (897)
T ss_pred ecCcCccccCcccHHHHCCCchhhhhcccChhhhhhhhHHHHHHHHHHHhC-CCCCEeeCccccCChhhhhCcCCCCccc
Confidence 999999221 11111 1100 11223555554 899999999863
Q ss_pred ------Cc---------chHHHHHHHHHHHHhcCCCCCCCeEEE--ecCCCEEEEEECCEEEEEECCCCC-------CCC
Q 014447 348 ------DW---------GLKEAISKLAAVRNRNGINTASRVNIL--ASDADVYIAAIGDRVIMKIGPKMD-------IGN 403 (424)
Q Consensus 348 ------~w---------~l~~~~~~L~~lR~~~~al~~G~~~~~--~~~~~v~~~~r~~~~lv~ln~~~~-------~~~ 403 (424)
+| .+..++|.|++||+++|+|..|..... ..++.|++|.| +.++||+|.+.. +|-
T Consensus 755 f~~s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R-~~llvV~NFsp~~~~~~Y~vgv 833 (897)
T PLN02960 755 FSLANRRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTR-GPLLFAFNFHPTNSYEEYEVGV 833 (897)
T ss_pred cccccCCcccccChhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEe-CCeEEEEeCCCCCcCcCceECC
Confidence 35 377899999999999999987655443 33557999999 468888888542 111
Q ss_pred cCCCCcEEEEeCCc
Q 014447 404 LIPSDFKVAADGTD 417 (424)
Q Consensus 404 ~~~~~~~~~~~~~~ 417 (424)
..++.|+..++.+.
T Consensus 834 P~~G~y~eilNSD~ 847 (897)
T PLN02960 834 EEAGEYELILNTDE 847 (897)
T ss_pred CCCCcEEEEEeCch
Confidence 22346777666543
|
|
| >TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-44 Score=382.26 Aligned_cols=345 Identities=20% Similarity=0.337 Sum_probs=233.6
Q ss_pred CceEEEeecCCCCCC---------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCC-------------------C-CCCC
Q 014447 23 PALLFQGFNWESSNK---------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQS-------------------V-APQG 73 (424)
Q Consensus 23 ~~v~~~~f~~ds~~~---------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~-------------------~-~~~g 73 (424)
+.|||++...+...+ ..|||.|++++|+|||+||||+||||||++. . .+||
T Consensus 451 d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWG 530 (1111)
T TIGR02102 451 DAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWG 530 (1111)
T ss_pred ceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccC
Confidence 459998885322211 3599999999999999999999999999851 1 2499
Q ss_pred CCcccccCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcc
Q 014447 74 YMPGRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 145 (424)
Q Consensus 74 Y~~~d~~~id~~~~Gt--------~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 145 (424)
|+|.+|++++ ++||+ .+|||+||++||++||+||||+|+|||+..+. |.+-. +.|+..
T Consensus 531 Ydp~~yfape-~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~--------f~~~~----p~Yy~~- 596 (1111)
T TIGR02102 531 YDPQNYFALS-GMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYI--------FEDLE----PNYYHF- 596 (1111)
T ss_pred CCcCcCcccc-cccccCCcCccccHHHHHHHHHHHHHCCCEEEEeccccccccccc--------ccccC----CCceEe-
Confidence 9999999999 99998 58999999999999999999999999987653 22110 111100
Q ss_pred cccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC-
Q 014447 146 ICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP- 221 (424)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p- 221 (424)
. +..+.... . .+..+++.++|.||++|++++++|++++||||||||.+.+++.++++.+ +++..|
T Consensus 597 -~-------~~~G~~~~--~-~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~dP~ 665 (1111)
T TIGR02102 597 -M-------DADGTPRT--S-FGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPN 665 (1111)
T ss_pred -e-------CCCCCccc--c-cCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCcC
Confidence 0 00011000 0 1134689999999999999999999999999999999999999888877 445677
Q ss_pred CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh---------cch---hhhhhhhcC
Q 014447 222 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV---------QGE---LWRLKDSNG 289 (424)
Q Consensus 222 ~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~---------~~~---~~~~~~~~~ 289 (424)
++++||.|.... +...+.. ......++.... ....|+..++..++..+ +|. +..+.....
T Consensus 666 ~~liGE~W~~~~----g~~~~~~---~~~~~~~~~~~~-~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~ 737 (1111)
T TIGR02102 666 IIMIGEGWRTYA----GDEGDPV---QAADQDWMKYTE-TVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIK 737 (1111)
T ss_pred EEEEEecccccC----CCCcccc---cccchhhHhcCC-cccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhc
Confidence 779999996411 0000000 011112332221 24456666665555321 121 122222221
Q ss_pred CC-CCCcCcCCCcceecccCCCCCcCcccCCC--------C------chhHHHHHHHHHcCCCeeEEecCCCC-------
Q 014447 290 KP-PGFIGILPQNAVTFIDNHDTGSTQRLWPF--------P------SDKVMLGYAYILTHPGTPCIFYDHFF------- 347 (424)
Q Consensus 290 ~~-~~~~~~~~~~~~~f~~nHD~~r~~~~~~~--------~------~~~~~~a~a~~l~~pG~P~iyyG~~~------- 347 (424)
.. .......|.+.++|+++||+.++...... . ..+.|+|.+++|+.+|+|+|++|||+
T Consensus 738 g~~~~~~~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gn 817 (1111)
T TIGR02102 738 AQPHNFEADSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFR 817 (1111)
T ss_pred CCccccccCCcccEEEEEecCCCCchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCC
Confidence 11 11112357889999999999876322211 0 13778999999999999999999843
Q ss_pred -----------------------------------------------Cc-------------chHHHHHHHHHHHHhcCC
Q 014447 348 -----------------------------------------------DW-------------GLKEAISKLAAVRNRNGI 367 (424)
Q Consensus 348 -----------------------------------------------~w-------------~l~~~~~~L~~lR~~~~a 367 (424)
+| ++.+++|.||+||+++|+
T Consensus 818 nn~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~lRk~~~~ 897 (1111)
T TIGR02102 818 NPDYRTPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIELRRSTDA 897 (1111)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHHHHhcCcc
Confidence 12 258899999999999999
Q ss_pred CCCCCe-------EEEecC--------CCEEEEEE----CCEEEEEECCCCC
Q 014447 368 NTASRV-------NILASD--------ADVYIAAI----GDRVIMKIGPKMD 400 (424)
Q Consensus 368 l~~G~~-------~~~~~~--------~~v~~~~r----~~~~lv~ln~~~~ 400 (424)
|+.+.. .++... +.+++|.. ++.++|++|.+.+
T Consensus 898 fr~~~~~~i~~~v~~~~~~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~~ 949 (1111)
T TIGR02102 898 FRLGSKALVDRKVTLITIPGQNEIEEEDLVVAYQIVATNGDIYAVFVNADDK 949 (1111)
T ss_pred ccccchhhhcCcEEEECCCCCcccccCCcEEEEEEecCCCCeEEEEECCCCC
Confidence 976654 233222 46788885 3578899998643
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645). |
| >PLN02447 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=355.56 Aligned_cols=352 Identities=18% Similarity=0.254 Sum_probs=226.4
Q ss_pred ceEEEeecCCCCCC-CCCcHHHHHh-hhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHH
Q 014447 24 ALLFQGFNWESSNK-AGGWYNSLKN-SIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (424)
Q Consensus 24 ~v~~~~f~~ds~~~-~~G~~~gi~~-~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~ 99 (424)
-+||++..-.+..+ ..|++.++++ +|+|||+||||+||||||++.+ .+|||++++|++++ ++|||.+|||+||++
T Consensus 230 ~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~-~~~Gtp~dlk~LVd~ 308 (758)
T PLN02447 230 LRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVS-SRSGTPEDLKYLIDK 308 (758)
T ss_pred CEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccc-cccCCHHHHHHHHHH
Confidence 37887775222222 3589999865 6999999999999999999987 47999999999999 999999999999999
Q ss_pred HHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 014447 100 FRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRV 179 (424)
Q Consensus 100 aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v 179 (424)
||++||+||||+|+||++.++.. + ...|.+ ++ ..|+.. ....+ ...| +...+|+++++|
T Consensus 309 aH~~GI~VilDvV~nH~~~~~~~--g-l~~fDg-~~---~~Yf~~-----------~~~g~--~~~w-~~~~~N~~~~eV 367 (758)
T PLN02447 309 AHSLGLRVLMDVVHSHASKNTLD--G-LNGFDG-TD---GSYFHS-----------GPRGY--HWLW-DSRLFNYGNWEV 367 (758)
T ss_pred HHHCCCEEEEEeccccccccccc--c-ccccCC-CC---cccccc-----------CCCCC--cCcC-CCceecCCCHHH
Confidence 99999999999999999976421 0 011211 10 111110 00000 0112 233599999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEecccCCCC--------------------------HHHHHHH---HHhcCC-CeEEeeec
Q 014447 180 QKELSDWMNWLKTEIGFDGWRFDFVKGYA--------------------------PSITKVY---MENTSP-DFAVGEKW 229 (424)
Q Consensus 180 ~~~l~~~~~~w~~~~gvDGfR~D~a~~~~--------------------------~~~~~~~---~~~~~p-~~~v~E~~ 229 (424)
+++|++++++|++++||||||+|++++|- ..|++.+ +++..| +++|||..
T Consensus 368 r~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~ 447 (758)
T PLN02447 368 LRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDV 447 (758)
T ss_pred HHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999998761 1245444 555677 78999977
Q ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch---hhhhhhhcCCCCCCcC-cCCCcceec
Q 014447 230 DSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLKDSNGKPPGFIG-ILPQNAVTF 305 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~f 305 (424)
.+-+ ... ...-.+.-|++..++........+.++.. .+...... ..+.. .+..+.+.+
T Consensus 448 s~~p-------~l~--------~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~---~sl~~r~~~E~~I~y 509 (758)
T PLN02447 448 SGMP-------TLC--------RPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIV---HTLTNRRYTEKCVAY 509 (758)
T ss_pred CCCC-------Ccc--------ccCCCCcCCcceEECCccchHHHHHHhhCCCcccCHHHHH---HHHhcccccCceEec
Confidence 5311 000 00001011222223333333333333221 11110000 00111 123455789
Q ss_pred ccCCCCCcCc--cc----C------CCCc--------h----hHHHHHHHHHcCCCe-eEEecCCCCC------------
Q 014447 306 IDNHDTGSTQ--RL----W------PFPS--------D----KVMLGYAYILTHPGT-PCIFYDHFFD------------ 348 (424)
Q Consensus 306 ~~nHD~~r~~--~~----~------~~~~--------~----~~~~a~a~~l~~pG~-P~iyyG~~~~------------ 348 (424)
.+|||+.... ++ + .++. . ..++..++++++||. +++|||+|++
T Consensus 510 ~eSHDevv~Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~~n 589 (758)
T PLN02447 510 AESHDQALVGDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPREGN 589 (758)
T ss_pred cCCcCeeecCcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCccccc
Confidence 9999997652 11 1 1111 1 124566789999999 7999998642
Q ss_pred ----------cc-----------hHHHHHHHHHHHHhcCCCCCCCeEEE---ecCCCEEEEEECCEEEEEECCCCC----
Q 014447 349 ----------WG-----------LKEAISKLAAVRNRNGINTASRVNIL---ASDADVYIAAIGDRVIMKIGPKMD---- 400 (424)
Q Consensus 349 ----------w~-----------l~~~~~~L~~lR~~~~al~~G~~~~~---~~~~~v~~~~r~~~~lv~ln~~~~---- 400 (424)
|+ +.+|+|.|++|++++++|..|. .++ ..++.|++|.|. .+|+|+|-+..
T Consensus 590 ~ws~~~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~-~~i~~~d~~~~Viaf~R~-~ll~V~NF~p~~s~~ 667 (758)
T PLN02447 590 GWSYDKCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSEH-QYVSRKDEGDKVIVFERG-DLVFVFNFHPTNSYS 667 (758)
T ss_pred ccCcccccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCCC-ceeeeecCCCCEEEEEeC-CeEEEEeCCCCCCCC
Confidence 42 5679999999999999997654 443 346689999996 47888887431
Q ss_pred ---CCCcCCCCcEEEEeCCc
Q 014447 401 ---IGNLIPSDFKVAADGTD 417 (424)
Q Consensus 401 ---~~~~~~~~~~~~~~~~~ 417 (424)
+|-..++.|++.++.+.
T Consensus 668 ~Y~igvp~~G~y~~ilnSD~ 687 (758)
T PLN02447 668 DYRVGCDKPGKYKIVLDSDA 687 (758)
T ss_pred CcEECCCCCCeEEEEECCCc
Confidence 33334556777666553
|
|
| >COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=357.68 Aligned_cols=364 Identities=21% Similarity=0.318 Sum_probs=229.6
Q ss_pred ceEEEeec---CCCCC------CCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCC-CCCCCCCcccccCCCCCCCCCHHHH
Q 014447 24 ALLFQGFN---WESSN------KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGSQADL 93 (424)
Q Consensus 24 ~v~~~~f~---~ds~~------~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~Gt~edl 93 (424)
.|+||+|. -++.+ +++|||+||+++|||||+|||++|||+||+++ ..+|||++.||++|| |++||++||
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id-~~~Gt~~d~ 79 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVD-PHFGTEEDF 79 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcC-cccCCHHHH
Confidence 37888885 14444 45699999999999999999999999999999 579999999999999 999999999
Q ss_pred HHHHHHHHHcCCEEEEeeecccCCCCCCC----------CC-cceeecCCCCC--CCCCCCCCcccccCCCccCCCCCCC
Q 014447 94 KSLIQAFRQKGIKCLADMVINHRTAERKD----------GR-GIYCIFEGGTS--DDRLDWGPSFICRGDKEYSDGQGND 160 (424)
Q Consensus 94 ~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~----------~~-~~~~~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~ 160 (424)
++||++||++||+||+|+|+||++.+|+. .. .+|+.|..... ..+.+|...+. .+.+.+ ...+.+
T Consensus 80 ~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~ 157 (505)
T COG0366 80 KELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFG-GDAWTW-GNTGEY 157 (505)
T ss_pred HHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcC-CCCCCc-CCCCce
Confidence 99999999999999999999999999851 11 24444443211 12233322221 111121 234567
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH-----------HHHHHHH---HhcCC-CeEE
Q 014447 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP-----------SITKVYM---ENTSP-DFAV 225 (424)
Q Consensus 161 ~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~-----------~~~~~~~---~~~~p-~~~v 225 (424)
..+.+...+||||+.||+||+++.+++++|++ +||||||+|+++++.. .++..+. +...+ ++..
T Consensus 158 ~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (505)
T COG0366 158 YLHLFSSEQPDLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISKDFGLPPSEENLTFLEEIHEYLREENPDVLIY 236 (505)
T ss_pred EEEecCCCCCCcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhccccCCCCcccccccHHHHHHHHHHHHHHHHhc
Confidence 78889999999999999999999999999999 9999999999999987 5555552 22222 2222
Q ss_pred eeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHH-HhcchhhhhhhhcCCCCCCcCcCCCccee
Q 014447 226 GEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQA-AVQGELWRLKDSNGKPPGFIGILPQNAVT 304 (424)
Q Consensus 226 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (424)
+|.+............... .............+++.....-.. ........+.......+............
T Consensus 237 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (505)
T COG0366 237 GEAITDVGEAPGAVKEDFA-------DNTSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPLAVNLNDGWNNL 309 (505)
T ss_pred Ccceeeeeccccccchhhh-------hccchhhhhHhhccccccccccccccCcccHHHHHHHHHHHHhhhccccCchhh
Confidence 2322211100000000000 000000011222233322111000 00000000000000000000000111234
Q ss_pred cccCCCCCcCcccCCCCc----hhHHHHHHHHHcCCCeeEEecCCCC---------------------------------
Q 014447 305 FIDNHDTGSTQRLWPFPS----DKVMLGYAYILTHPGTPCIFYDHFF--------------------------------- 347 (424)
Q Consensus 305 f~~nHD~~r~~~~~~~~~----~~~~~a~a~~l~~pG~P~iyyG~~~--------------------------------- 347 (424)
|.+|||.+|..+...... ...+++.++++++||+|+||||+|.
T Consensus 310 ~~~~hD~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 389 (505)
T COG0366 310 FLSNHDQPRLLSRFGDDVGGRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVELDSIILLSRDGCRTPM 389 (505)
T ss_pred hhhhcCccceeeeccCCccchHHHHHHHHHHHHhCCCCcEEecccccCCCCCCCcchhhhchhhhhhhhhccccCCCCCc
Confidence 799999999988765444 5678888889999999999999732
Q ss_pred Cc--------------------------------------chHHHHHHHHHHHHhc-CCCCCCCeEEEec--CCCEEEEE
Q 014447 348 DW--------------------------------------GLKEAISKLAAVRNRN-GINTASRVNILAS--DADVYIAA 386 (424)
Q Consensus 348 ~w--------------------------------------~l~~~~~~L~~lR~~~-~al~~G~~~~~~~--~~~v~~~~ 386 (424)
.| +++.++++|+++|+.+ +.+..|....... +..+++|.
T Consensus 390 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 469 (505)
T COG0366 390 PWDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLANGEDFVLLADDDPSLLAFL 469 (505)
T ss_pred CCCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhcCcccceecCCCCceEEEEe
Confidence 12 2678899999999998 4456674444333 33689999
Q ss_pred EC--CE-EEEEECCC
Q 014447 387 IG--DR-VIMKIGPK 398 (424)
Q Consensus 387 r~--~~-~lv~ln~~ 398 (424)
|. ++ ++|++|.+
T Consensus 470 ~~~~~~~~~~~~n~~ 484 (505)
T COG0366 470 RESGGETLLVVNNLS 484 (505)
T ss_pred cccCCceEEEEEcCC
Confidence 83 23 55555553
|
|
| >KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-43 Score=354.88 Aligned_cols=375 Identities=26% Similarity=0.399 Sum_probs=260.2
Q ss_pred cCCCCCCceEEEeec---CCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccccCCCCCCCCCHHH
Q 014447 17 FLPFTSPALLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQAD 92 (424)
Q Consensus 17 ~p~~~~~~v~~~~f~---~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~ed 92 (424)
.|+|++.+++||++. -+|.+++.||++||++||+|||++||++|||+||.+++. ++||.+.||+.|+ |+|||+||
T Consensus 11 ~~~~W~~~~~YQI~~~sF~~s~~d~~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~-p~fGt~ed 89 (545)
T KOG0471|consen 11 SPDWWKTESIYQIYPDSFADSDGDGVGDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLR-PRFGTEED 89 (545)
T ss_pred CchhhhcCceeEEeccccccccCCCccccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhc-ccccHHHH
Confidence 689999999999885 244556789999999999999999999999999999986 5999999999999 99999999
Q ss_pred HHHHHHHHHHcCCEEEEeeecccCCCCCCC------CC---cceeecCCC------CCCCCCCCCCcccccCCCccCCCC
Q 014447 93 LKSLIQAFRQKGIKCLADMVINHRTAERKD------GR---GIYCIFEGG------TSDDRLDWGPSFICRGDKEYSDGQ 157 (424)
Q Consensus 93 l~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~------~~---~~~~~~~~~------~~~~~~~w~~~~~~~~~~~~~~~~ 157 (424)
|++||+++|++||+||+|+|+||++.+|+. .+ .+|+++.++ +...+.+|.+.+.. ..++|....
T Consensus 90 f~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~-s~~~~~e~~ 168 (545)
T KOG0471|consen 90 FKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGG-SAWPFDEGR 168 (545)
T ss_pred HHHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhcc-ccCcccccc
Confidence 999999999999999999999999977651 11 134444443 23446677766543 334555667
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEeeecCCCCCCC
Q 014447 158 GNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGP 236 (424)
Q Consensus 158 ~~~~~~~~~~~~~dln~~np~v~~~l~~~~~-~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~v~E~~~~~~~~~ 236 (424)
.++..+.+...+||+|++||+|++.+.+.++ +|.+ .||||||+|+++++..+++. ..-...|++-+||.+.+..+..
T Consensus 169 ~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~~-~gvdGfRiD~v~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~ 246 (545)
T KOG0471|consen 169 QKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWLE-KGVDGFRIDAVKGYAGENFK-NMWPDEPVFDVGEKLQDDNYVA 246 (545)
T ss_pred cceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHhh-cCCCeEEEEccccccccccc-ccccCCCcccceeEecCcchhh
Confidence 7888899999999999999999999999999 6776 99999999999999988877 4344466788999987765433
Q ss_pred CCCCCCCCCCch--hHHHHHHHhcCCceeeecccchHHHHHHhcc---hhhhhhhhcCCCC----------------CCc
Q 014447 237 DGKPDANQDGHR--GALKDWVQAAGGAVAAFDFTTKGILQAAVQG---ELWRLKDSNGKPP----------------GFI 295 (424)
Q Consensus 237 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~---~~~~~~~~~~~~~----------------~~~ 295 (424)
....+|..+-.. ..+..+..........+.+.....+...... .+.++........ ...
T Consensus 247 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~~~ 326 (545)
T KOG0471|consen 247 YQYNDYGEDQPEIHDLIRAERFLLDDYSAAFGFGDKRILQTEAYSSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLTVA 326 (545)
T ss_pred cccccccccchhhhhHHHHHHhhhhhhhhcccccchhhhhhhhhccHHHHHhhhccCCCCccccccchhhhhhhhhccch
Confidence 223333322111 1111111111123333333222111111111 1111111110000 000
Q ss_pred CcCC--------------CcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC--------------
Q 014447 296 GILP--------------QNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF-------------- 347 (424)
Q Consensus 296 ~~~~--------------~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~-------------- 347 (424)
.... ..+...+.|||..|..+.++ .+..++..++++++||+|++|+|+|+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~a~W~~~~~~~~r~~sr~~--~~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~ 404 (545)
T KOG0471|consen 327 SIYKEVEVDWLSNHDTENRWAHWVLGNHDQARLASRFG--SDSVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGED 404 (545)
T ss_pred HHHHHHHHHHHhcCCccCCceeeeecCccchhhHHHhc--chhHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcC
Confidence 0001 11233556666776666554 23367778899999999999999842
Q ss_pred ----------Cc-----------------------------------chHHHHHHHHHHHHhcCCCCCCCeEEEecCCCE
Q 014447 348 ----------DW-----------------------------------GLKEAISKLAAVRNRNGINTASRVNILASDADV 382 (424)
Q Consensus 348 ----------~w-----------------------------------~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v 382 (424)
.| ++..+++++..+|+.+..++.|....-..++.+
T Consensus 405 ~~~~~~rt~~~w~~~~~~gfs~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~~~~~~~~i 484 (545)
T KOG0471|consen 405 PKLMQSRTPMQWDESTNAGFSEASKTWLPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSFVLFAATPGL 484 (545)
T ss_pred cHHhccCCccccccccccCCCCccCcceeccccchhheeeccccCCccHHHHHHHHHHHhhhcccccccceeeecCCCce
Confidence 23 378899999999999877888888888888999
Q ss_pred EEEEE---CCEEEEEECC
Q 014447 383 YIAAI---GDRVIMKIGP 397 (424)
Q Consensus 383 ~~~~r---~~~~lv~ln~ 397 (424)
++|.| ....+++++|
T Consensus 485 f~~~r~~~~~~~~~~~~~ 502 (545)
T KOG0471|consen 485 FSFSRNWDGNERFIAVLN 502 (545)
T ss_pred EEEEeccCCCceEEEEEe
Confidence 99998 3344444444
|
|
| >TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=331.30 Aligned_cols=352 Identities=15% Similarity=0.168 Sum_probs=249.8
Q ss_pred ceEEEeecCCC-CCCCCCcHHHHH---hhhhHHHHcCCCEEEeCCCCCC---------CC-CCCCCcccccCCCCCCCCC
Q 014447 24 ALLFQGFNWES-SNKAGGWYNSLK---NSIPDLSNAGITHVWLPPPSQS---------VA-PQGYMPGRLYDLDASKYGS 89 (424)
Q Consensus 24 ~v~~~~f~~ds-~~~~~G~~~gi~---~~L~ylk~lGv~~I~l~Pi~~~---------~~-~~gY~~~d~~~id~~~~Gt 89 (424)
.|++.+++ .| ..+.|..+-+.. .-.+||++|||++|||+|++++ |. +.||+++| +.|| |.|||
T Consensus 52 ~~W~~~~P-~s~i~~~~~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d-~~Id-p~~GT 128 (688)
T TIGR02455 52 SVWFTAYP-AAIIAPEGCSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRIS-FDID-PLLGS 128 (688)
T ss_pred CeeEEecc-hhhcCCCCCcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCccc-CccC-cccCC
Confidence 58888887 33 223333443333 2468999999999999999999 65 68999999 5999 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCCCCC--------CCCccee-----------ecCCCCCC--------------
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERK--------DGRGIYC-----------IFEGGTSD-------------- 136 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~--------~~~~~~~-----------~~~~~~~~-------------- 136 (424)
++||++|+++||++|||||+|+|+||||..|+ .+...|+ .+++..+.
T Consensus 129 ~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghdF~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L 208 (688)
T TIGR02455 129 EEELIQLSRMAAAHNAITIDDIIPAHTGKGADFRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDEL 208 (688)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcchHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHH
Confidence 99999999999999999999999999999885 1122233 44432111
Q ss_pred ---C---CCCCCCccccc----CCCccC--------CCCCCCCCCCCCCCCCCCCCCCHH--HHHHHH-HHHHHHHHhcC
Q 014447 137 ---D---RLDWGPSFICR----GDKEYS--------DGQGNDDTGEDFQPAPDIDHLNPR--VQKELS-DWMNWLKTEIG 195 (424)
Q Consensus 137 ---~---~~~w~~~~~~~----~~~~~~--------~~~~~~~~~~~~~~~~dln~~np~--v~~~l~-~~~~~w~~~~g 195 (424)
. ...-.-.|+.. ..+.|. .....++++.|+.++|+|||.||. ||+.|+ +++.+|.+ +|
T Consensus 209 ~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~-lG 287 (688)
T TIGR02455 209 KAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDC-LG 287 (688)
T ss_pred hhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHH-hc
Confidence 0 00000011101 123333 234567778899999999999999 999999 89999998 99
Q ss_pred CCeEEecccCCCC-------------HHHH---HHHHH--hcCC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHH
Q 014447 196 FDGWRFDFVKGYA-------------PSIT---KVYME--NTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQ 256 (424)
Q Consensus 196 vDGfR~D~a~~~~-------------~~~~---~~~~~--~~~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (424)
++|||+||+..+- .++. +.++. ..++ .++++|.... .+.+..|..
T Consensus 288 ~~GfRLDAvpfLg~e~~~~~~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~----------------~~d~~~~~g 351 (688)
T TIGR02455 288 ARGLRLDANGFLGVERRAEGTAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNLT----------------IDDIAAMSH 351 (688)
T ss_pred cccceeccccceeeecCCCCCCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccCC----------------HHHHHHHhC
Confidence 9999999987662 2343 33444 3456 8899998653 678888887
Q ss_pred hcCCceeeecccchHHHHHHh-cchhhhhhhhcCCCCCCcCcCCCcceecccCCCC---C--------------------
Q 014447 257 AAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT---G-------------------- 312 (424)
Q Consensus 257 ~~~~~~~~~df~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~---~-------------------- 312 (424)
++++..|||..+..+..++ .|+...+.......+.. +..+.+.++|+.|||+ +
T Consensus 352 --~~~dl~~dF~t~p~~~~AL~tgda~pLr~~L~~~~~~-gid~~~~~~~LrNHDELtlelvh~~~~~~~~~~~~~g~~~ 428 (688)
T TIGR02455 352 --GGADLSYDFITRPAYHHALLTGDTEFLRLMLKEMHAF-GIDPASLIHALQNHDELTLELVHFWTLHAHDHYHYKGQTL 428 (688)
T ss_pred --CCcceeecccccHHHHHHHHcCCHHHHHHHHHhhhcC-CCCchhhhhhccCccccchhhhhhcccccccccccccccC
Confidence 4899999999988877765 56544444333222221 1124567899999999 0
Q ss_pred ---------------cC---------------------------------cccCCCCchhHHHHHHHHHc----CCCeeE
Q 014447 313 ---------------ST---------------------------------QRLWPFPSDKVMLGYAYILT----HPGTPC 340 (424)
Q Consensus 313 ---------------r~---------------------------------~~~~~~~~~~~~~a~a~~l~----~pG~P~ 340 (424)
|. ..+...++++++++++++++ +||+|+
T Consensus 429 ~g~~l~e~~R~~m~~~~a~d~~p~~m~~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG~p~ 508 (688)
T TIGR02455 429 PGGHLREHIREEIYERLSGEHAPYNLKFVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPGVFA 508 (688)
T ss_pred CccccCHHHHHHHHHHhcCCCccccceEEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCCceE
Confidence 00 00111234568899999999 999999
Q ss_pred EecC--------------CCCC-----c----------------------------------------chHHHHHHHHHH
Q 014447 341 IFYD--------------HFFD-----W----------------------------------------GLKEAISKLAAV 361 (424)
Q Consensus 341 iyyG--------------~~~~-----w----------------------------------------~l~~~~~~L~~l 361 (424)
|||| +|++ | ++...+++++++
T Consensus 509 L~ygdl~GalpL~~~~v~deigmGD~~wl~rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~~il~v 588 (688)
T TIGR02455 509 LSGWDLVGALPLAAEAVAELMGDGDTRWIHRGGYDLADLAPEAEASAEGLPKARALYGSLAEQLDEPDSFACKLKKILAV 588 (688)
T ss_pred eecccccccccccccchhhhhccCccccccCCCcccCCCCchhhhccCCCCCCcCCCCCHHHHhhCCccHHHHHHHHHHH
Confidence 9999 4331 2 488999999999
Q ss_pred HHhcCCCCCCCeEEEec-CCCEEEEEE---C-CEEEEEECCC
Q 014447 362 RNRNGINTASRVNILAS-DADVYIAAI---G-DRVIMKIGPK 398 (424)
Q Consensus 362 R~~~~al~~G~~~~~~~-~~~v~~~~r---~-~~~lv~ln~~ 398 (424)
|++++++..|.+..+.. +..++++.+ + +..+++++|+
T Consensus 589 R~~~~i~~~~~~~~~~~~~~gvLa~v~~l~~~~~~~L~v~Nf 630 (688)
T TIGR02455 589 RQAYDIAASKQILIPDVQAPGLLVMVHELPAGKGIQITALNF 630 (688)
T ss_pred HHhCCcccCceeeecCCCCCcEEEEEEEcCCCCceEEEeecc
Confidence 99999999999988765 568999987 2 2445555543
|
Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits. |
| >TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=335.71 Aligned_cols=188 Identities=20% Similarity=0.328 Sum_probs=140.1
Q ss_pred ceEEEeecCCC-----C--CCCCCcHHHHHhh-------hhHHHHcCCCEEEeCCCCCCC--------------------
Q 014447 24 ALLFQGFNWES-----S--NKAGGWYNSLKNS-------IPDLSNAGITHVWLPPPSQSV-------------------- 69 (424)
Q Consensus 24 ~v~~~~f~~ds-----~--~~~~G~~~gi~~~-------L~ylk~lGv~~I~l~Pi~~~~-------------------- 69 (424)
.+||++=..|- . ....|+|.+++|+ |.|||+||||+|+|||+++..
T Consensus 253 ~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~l~ 332 (898)
T TIGR02103 253 MVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSKLC 332 (898)
T ss_pred cEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhhhh
Confidence 48886543221 1 1357999999886 667778899999999998631
Q ss_pred --------------------------------------------CCCCCCcccccCCCCCCCCC-------HHHHHHHHH
Q 014447 70 --------------------------------------------APQGYMPGRLYDLDASKYGS-------QADLKSLIQ 98 (424)
Q Consensus 70 --------------------------------------------~~~gY~~~d~~~id~~~~Gt-------~edl~~Lv~ 98 (424)
.+|||+|..|+.++ ..|+| .+|||+||+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPe-gSYatdp~g~~Ri~Efk~mV~ 411 (898)
T TIGR02103 333 ELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPE-GSYATDPEGPARIKEFREMVQ 411 (898)
T ss_pred ccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcC-hhhccCCCCchHHHHHHHHHH
Confidence 16999999999999 99998 379999999
Q ss_pred HHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHH
Q 014447 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPR 178 (424)
Q Consensus 99 ~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~ 178 (424)
+||++||+||||+|+|||+.+++..... +..- .+.|+.. .+ ..+.+. ...+..+++.++|.
T Consensus 412 alH~~Gi~VIlDVVyNHt~~~g~~~~s~---ld~~----~P~YY~r---~~------~~G~~~---n~~~~~d~a~e~~~ 472 (898)
T TIGR02103 412 ALNKTGLNVVMDVVYNHTNASGPNDRSV---LDKI----VPGYYHR---LN------EDGGVE---NSTCCSNTATEHRM 472 (898)
T ss_pred HHHHCCCEEEEEeecccccccCccCccc---cccc----CcHhhEe---eC------CCCCee---cCCCCcCCCCCCHH
Confidence 9999999999999999999876421111 1100 0111100 00 001111 11233568999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC-CeEEeeecCC
Q 014447 179 VQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP-DFAVGEKWDS 231 (424)
Q Consensus 179 v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p-~~~v~E~~~~ 231 (424)
||++|++.+++|++++||||||||.+++++.+||+++ +++++| ++++||.|..
T Consensus 473 Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i~pdi~l~GEgW~~ 529 (898)
T TIGR02103 473 MAKLIVDSLVVWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKALTPEIYFYGEGWDF 529 (898)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHhCCCEEEEecCCCc
Confidence 9999999999999999999999999999999999998 556677 7799999974
|
Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102). |
| >COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=320.02 Aligned_cols=317 Identities=20% Similarity=0.255 Sum_probs=201.7
Q ss_pred CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 38 AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 38 ~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
.-|+++..+++|+|||+||||+|+||||.+.| .+|||+++-||++. ++|||.||||+||++||++||.||||+|+||
T Consensus 160 ~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~-sryGtPedfk~fVD~aH~~GIgViLD~V~~H 238 (628)
T COG0296 160 FLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPT-SRYGTPEDFKALVDAAHQAGIGVILDWVPNH 238 (628)
T ss_pred CcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceecccc-ccCCCHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 35899999999999999999999999999988 48999999999999 9999999999999999999999999999999
Q ss_pred CCCCCCCCCcceeecCCCCCC-CCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 014447 116 RTAERKDGRGIYCIFEGGTSD-DRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 194 (424)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~ 194 (424)
.+.+.. +...-+++.. ...++.. .++ ..|... -.|+..++||.++++++++|+++|
T Consensus 239 F~~d~~-----~L~~fdg~~~~e~~~~~~--------~~~---------~~Wg~~-i~~~gr~EVR~Fll~nal~Wl~~y 295 (628)
T COG0296 239 FPPDGN-----YLARFDGTFLYEHEDPRR--------GEH---------TDWGTA-IFNYGRNEVRNFLLANALYWLEEY 295 (628)
T ss_pred CCCCcc-----hhhhcCCccccccCCccc--------ccC---------CCcccc-hhccCcHHHHHHHHHHHHHHHHHh
Confidence 987543 2211111110 0001110 000 011111 145568999999999999999999
Q ss_pred CCCeEEecccCCCC------------------------HHHHHHH---HHhcCC-CeEEeeecCCCCCCCCCCCCCCCCC
Q 014447 195 GFDGWRFDFVKGYA------------------------PSITKVY---MENTSP-DFAVGEKWDSLSYGPDGKPDANQDG 246 (424)
Q Consensus 195 gvDGfR~D~a~~~~------------------------~~~~~~~---~~~~~p-~~~v~E~~~~~~~~~~~~~~~~~~~ 246 (424)
+|||+|+|||..|. .+|.+.. +....| ++.|+|.|.+...-
T Consensus 296 HiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~----------- 364 (628)
T COG0296 296 HIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHV----------- 364 (628)
T ss_pred CCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCc-----------
Confidence 99999999997762 1233333 333345 67899988653210
Q ss_pred chhHHHHHHHhcCCceeeecccchH-HHHHHh----cchhhhhhhhcCCCCCCcCcCCCcceecccCCCCC--cCcccCC
Q 014447 247 HRGALKDWVQAAGGAVAAFDFTTKG-ILQAAV----QGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTG--STQRLWP 319 (424)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~df~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~--r~~~~~~ 319 (424)
.+...+ +|.. |++.... .+.+.+ .....+-.......-++. ..++..+.+..|||+. -..++..
T Consensus 365 ---t~~~~~---gG~g--f~yk~nmg~m~D~~~y~~~~~~~r~~~h~~~tf~~~-y~~se~~~l~~sHDevvhGk~sl~~ 435 (628)
T COG0296 365 ---TLPVAI---GGLG--FGYKWNMGWMHDTLFYFGKDPVYRKYHHGELTFGLL-YAFSENVVLPLSHDEVVHGKRSLGE 435 (628)
T ss_pred ---eeeecc---cccc--hhhhhhhhhHhhHHHhcccCccccccccCCCccccc-cccceeEeccccccceeecccchhc
Confidence 000111 1111 2222111 122211 111111111111111111 1245668899999996 2222211
Q ss_pred -------CCchhHHHHHHHHHcCCCeeEEecCCCCC------------c-------------chHHHHHHHHHHHHhcCC
Q 014447 320 -------FPSDKVMLGYAYILTHPGTPCIFYDHFFD------------W-------------GLKEAISKLAAVRNRNGI 367 (424)
Q Consensus 320 -------~~~~~~~~a~a~~l~~pG~P~iyyG~~~~------------w-------------~l~~~~~~L~~lR~~~~a 367 (424)
...+.+|.++++|++.||+|+++||+|++ | ++..+.+.|.++-+..++
T Consensus 436 rm~g~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~~~~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~~~~~ 515 (628)
T COG0296 436 RMPGDAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWNFFSSLDWLLLDQAVREGRHKEFRRLVRDLNALYRIPDP 515 (628)
T ss_pred cCCcchhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCcccCCCChhhhhhccccchHHHHHHHHHhhHHhhccCCc
Confidence 13457889999999999999999999864 3 134445555556666666
Q ss_pred C-----CCCCeEEEec---CCCEEEEEE-----CCEEEEEECCC
Q 014447 368 N-----TASRVNILAS---DADVYIAAI-----GDRVIMKIGPK 398 (424)
Q Consensus 368 l-----~~G~~~~~~~---~~~v~~~~r-----~~~~lv~ln~~ 398 (424)
+ ....++|+.. ++++++|.| +++.+|++||+
T Consensus 516 l~~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~~n~ 559 (628)
T COG0296 516 LHEQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVVNNF 559 (628)
T ss_pred cchhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEEeCC
Confidence 5 3345677664 236888887 45667777774
|
|
| >PLN02877 alpha-amylase/limit dextrinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=319.15 Aligned_cols=190 Identities=19% Similarity=0.221 Sum_probs=136.2
Q ss_pred ceEEEeecCCCC-------CCCCCcHHHHHhh-------hhHHHHcCCCEEEeCCCCCCC--------------------
Q 014447 24 ALLFQGFNWESS-------NKAGGWYNSLKNS-------IPDLSNAGITHVWLPPPSQSV-------------------- 69 (424)
Q Consensus 24 ~v~~~~f~~ds~-------~~~~G~~~gi~~~-------L~ylk~lGv~~I~l~Pi~~~~-------------------- 69 (424)
.|||++=..|-. .+..|+|.+++++ |+|||+||||+|+|||+++..
T Consensus 340 ~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~ 419 (970)
T PLN02877 340 ISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKL 419 (970)
T ss_pred cEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccc
Confidence 488866532221 2346999998886 667777799999999998731
Q ss_pred -------------------CCCCCCcccccCCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCC
Q 014447 70 -------------------APQGYMPGRLYDLDASKYGS-------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDG 123 (424)
Q Consensus 70 -------------------~~~gY~~~d~~~id~~~~Gt-------~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~ 123 (424)
.+|||+|..|+.++ ..|+| ..|||+||++||++||+||||+|+|||+..++..
T Consensus 420 ~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPE-gSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~ 498 (970)
T PLN02877 420 PPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPK-GSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFD 498 (970)
T ss_pred cccchhhhhcccccccCCCCCCCCCccccCCCC-cccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcc
Confidence 46999999999999 99998 3589999999999999999999999998654311
Q ss_pred CcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014447 124 RGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (424)
Q Consensus 124 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (424)
... .+..- .+.|+. .......+.+ .....+.+.+++.||++|++.+++|++++||||||||.
T Consensus 499 ~~s--~ld~~----vP~YY~--r~~~~G~~~n----------s~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDl 560 (970)
T PLN02877 499 ENS--VLDKI----VPGYYL--RRNSDGFIEN----------STCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDL 560 (970)
T ss_pred hhh--cccCC----CCCceE--EECCCCCccc----------CCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 000 01100 011110 0000011110 11223467899999999999999999999999999999
Q ss_pred cCCCCHHHHHHH---HHhc--------CC-CeEEeeecCCC
Q 014447 204 VKGYAPSITKVY---MENT--------SP-DFAVGEKWDSL 232 (424)
Q Consensus 204 a~~~~~~~~~~~---~~~~--------~p-~~~v~E~~~~~ 232 (424)
+.+++.+.++.+ ++++ .| ++++||-|.-.
T Consensus 561 mg~i~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~g 601 (970)
T PLN02877 561 MGHLMKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWDFG 601 (970)
T ss_pred cccccHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCCCC
Confidence 999999877665 4554 24 77999999643
|
|
| >TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=306.06 Aligned_cols=192 Identities=20% Similarity=0.265 Sum_probs=146.8
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+|||.+++++|+||++|||++|||+||+++. ++|||++.||+.|| |+|||+++|++||++||++||+||+|+|+||+
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~id-p~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~ 90 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEIN-PELGGEEGLRRLSEAARARGLGLIVDIVPNHM 90 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcC-CCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 6999999999999999999999999999964 57999999999999 99999999999999999999999999999999
Q ss_pred CCC---CC-----------CCCcceee--cCCC------------CCC-------------C-----CCCCCCcccccCC
Q 014447 117 TAE---RK-----------DGRGIYCI--FEGG------------TSD-------------D-----RLDWGPSFICRGD 150 (424)
Q Consensus 117 ~~~---~~-----------~~~~~~~~--~~~~------------~~~-------------~-----~~~w~~~~~~~~~ 150 (424)
|.+ |+ ++..+|+. |... .+. . ...++.+.+.-..
T Consensus 91 a~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p 170 (825)
T TIGR02401 91 AVHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAP 170 (825)
T ss_pred ccccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCc
Confidence 986 22 11122221 1100 000 0 0001111110110
Q ss_pred C------------------------------ccC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 014447 151 K------------------------------EYS--DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 198 (424)
Q Consensus 151 ~------------------------------~~~--~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDG 198 (424)
. .|. +..-||..+....+++.++.++|+|.++..+.+..|+++.-|||
T Consensus 171 ~ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdG 250 (825)
T TIGR02401 171 GTLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDG 250 (825)
T ss_pred cchhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCce
Confidence 0 121 23356777777889999999999999999999999999555999
Q ss_pred EEecccCCC--CHHHHHHHHHhcCC-CeEEee-ecCC
Q 014447 199 WRFDFVKGY--APSITKVYMENTSP-DFAVGE-KWDS 231 (424)
Q Consensus 199 fR~D~a~~~--~~~~~~~~~~~~~p-~~~v~E-~~~~ 231 (424)
+|+|+++++ |..+|+.+-+..+| .++|.| ++..
T Consensus 251 lRIDh~dGL~dP~~Yl~rLr~~~~~~~yivvEKIl~~ 287 (825)
T TIGR02401 251 LRIDHIDGLADPEGYLRRLRELVGPARYLVVEKILAP 287 (825)
T ss_pred EEeccccccCChHHHHHHHHHhcCCCceEEEEEeccC
Confidence 999999999 78899999777776 778888 5444
|
This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis. |
| >COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=305.54 Aligned_cols=171 Identities=25% Similarity=0.410 Sum_probs=126.7
Q ss_pred CCceEEEeecCCCC-------CCCCCcHHHHHhh--hhHHHHcCCCEEEeCCCCCCC-----------CCCCCCcccccC
Q 014447 22 SPALLFQGFNWESS-------NKAGGWYNSLKNS--IPDLSNAGITHVWLPPPSQSV-----------APQGYMPGRLYD 81 (424)
Q Consensus 22 ~~~v~~~~f~~ds~-------~~~~G~~~gi~~~--L~ylk~lGv~~I~l~Pi~~~~-----------~~~gY~~~d~~~ 81 (424)
.+.|||++=..+-. ...+|||.+++++ |+|||+||||+|+||||+... ++|||+|..|++
T Consensus 170 ~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFA 249 (697)
T COG1523 170 EDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFA 249 (697)
T ss_pred cceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccC
Confidence 44688876532222 2247999999999 999999999999999998621 589999999999
Q ss_pred CCCCCCCC-------HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccC
Q 014447 82 LDASKYGS-------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154 (424)
Q Consensus 82 id~~~~Gt-------~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 154 (424)
++ ++|-+ ..|||.||+++|++||.||||+|+|||+..... +.-..|++ .+...++....++.|.
T Consensus 250 p~-~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~--g~t~~f~~------id~~~Yyr~~~dg~~~ 320 (697)
T COG1523 250 PE-GRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNEL--GPTLSFRG------IDPNYYYRLDPDGYYS 320 (697)
T ss_pred CC-ccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCc--Cccccccc------CCcCceEEECCCCCee
Confidence 99 88876 459999999999999999999999999864321 11111222 1111111111112232
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHH
Q 014447 155 --DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT 212 (424)
Q Consensus 155 --~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~ 212 (424)
.+++|- +|.++|.||++|++.+++|++|++|||||||-+..+..+..
T Consensus 321 N~TGcGNt-----------ln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~ 369 (697)
T COG1523 321 NGTGCGNT-----------LNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETM 369 (697)
T ss_pred cCCccCcc-----------cccCChHHHHHHHHHHHHHHHHhCCCceeecchhhcccccc
Confidence 234443 99999999999999999999999999999999987765543
|
|
| >KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=262.77 Aligned_cols=345 Identities=20% Similarity=0.328 Sum_probs=235.3
Q ss_pred CCCC-CCceEEEeecCCCCCCCCCcHHHHHhhh-hHHHHcCCCEEEeCCCCCCCC--------CCCCCcccccCCCCCCC
Q 014447 18 LPFT-SPALLFQGFNWESSNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSVA--------PQGYMPGRLYDLDASKY 87 (424)
Q Consensus 18 p~~~-~~~v~~~~f~~ds~~~~~G~~~gi~~~L-~ylk~lGv~~I~l~Pi~~~~~--------~~gY~~~d~~~id~~~~ 87 (424)
|.|+ +++.|+|.|+|. +.+|..+. ..|.--|+.+|+++|+.|+.. -..|+|.+ |+++ ++-
T Consensus 22 t~~~~~R~tmVHLFEWK--------W~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~-tRS 91 (504)
T KOG2212|consen 22 TNTQQGRTTIVHLFEWK--------WVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLC-TRS 91 (504)
T ss_pred chhhcCcceEEEEEEee--------hHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEee-ccC
Confidence 5555 678999999996 77776665 478999999999999999542 23799996 6799 999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCC-----CCccee-----ecCCCCCCCCCCCCCcccccC----CCcc
Q 014447 88 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-----GRGIYC-----IFEGGTSDDRLDWGPSFICRG----DKEY 153 (424)
Q Consensus 88 Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~-----~~~~~~-----~~~~~~~~~~~~w~~~~~~~~----~~~~ 153 (424)
|.+|+|+.||+.|.+.|+||++|+|+||++....+ ..+.+. .|+ |-|+...++.+.. |.. ...|
T Consensus 92 GNE~eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfP-GVPYs~~DFn~~k-c~~~~~~i~~~ 169 (504)
T KOG2212|consen 92 GNEDEFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFP-GVPYSGWDFNDGK-CKTGSGDIENY 169 (504)
T ss_pred CCHHHHHHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCC-CCCcccccCCCcc-cCCCccccccc
Confidence 99999999999999999999999999999853210 001110 011 1122222222211 111 1122
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcC-----------CC
Q 014447 154 SDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTS-----------PD 222 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~-----------p~ 222 (424)
.+ ......+..-++.|||..+..||.++++.+..+++ +||.|||+||+|||+++-+..++...+ ..
T Consensus 170 Nd--a~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLid-lGVAGFRvDAsKHMwp~Di~~I~~~l~nLnsD~f~s~srp 246 (504)
T KOG2212|consen 170 ND--ATQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLID-IGVAGFRVDASKHMWPGDIKAILDKLHNLNSDWFPSGSKP 246 (504)
T ss_pred cc--hhhhhcceEeecchhhhcchHHHHHHHHHHHHHHH-hccceeeechhhccChHHHHHHHHHHhhcccccccCCCCc
Confidence 21 23445677899999999999999999999999998 999999999999999987777643321 13
Q ss_pred eEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch-hhhhhhhcCCCCCCcCcCCCc
Q 014447 223 FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE-LWRLKDSNGKPPGFIGILPQN 301 (424)
Q Consensus 223 ~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 301 (424)
|++.|+..-.... -+..+|. . .+....| .+...+..++.+. .+.+...++..-+.. ....
T Consensus 247 fi~qEVID~GgE~-v~~~dY~------------g--~G~~TeF--~f~~~ig~~~r~~~~~kyL~nwG~~wGf~--~s~~ 307 (504)
T KOG2212|consen 247 FIYQEVIDLGGEP-IKSSDYF------------G--NGRVTEF--KFGAKLGTVIRKWNKMKYLKNWGEGWGFM--PSDR 307 (504)
T ss_pred eehhhhhhcCCce-eeccccc------------C--Cceeeee--echHHHHHHHhcchhHHHHHhcCCccCcC--CCcc
Confidence 6777877432100 1112222 1 2344344 4445566666543 333333333222222 1346
Q ss_pred ceecccCCCCCcCccc-----CCC-CchhHHHHHHHHHcCC-CeeEEecCCCC---------------------------
Q 014447 302 AVTFIDNHDTGSTQRL-----WPF-PSDKVMLGYAYILTHP-GTPCIFYDHFF--------------------------- 347 (424)
Q Consensus 302 ~~~f~~nHD~~r~~~~-----~~~-~~~~~~~a~a~~l~~p-G~P~iyyG~~~--------------------------- 347 (424)
+++|++|||++|..+. +++ ..+++++|.++||+.| |+|.+...--+
T Consensus 308 ~L~FvDNHDNQR~~gagga~VltYK~~~~YkmA~~FmLA~PyG~~RVMSSFaF~~~D~~PP~~~~~~i~SP~Fn~D~tC~ 387 (504)
T KOG2212|consen 308 ALVFVDNHDNQRGHGAGGASVLTYKDARLYKMAVGFMLAHPYGFTRVMSSFAFDVNDWVPPPNNNGVIKSPTFNPDTTCG 387 (504)
T ss_pred eEEEeccCcccccCCCCcceEEEecchhhhhhhhhhheecccCcchhheeeeeecCCCCCCCCCCcceecceeCCCCccc
Confidence 7999999999997654 222 4568999999999999 99998775311
Q ss_pred -Cc---chHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEECCEEEEEECCC
Q 014447 348 -DW---GLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPK 398 (424)
Q Consensus 348 -~w---~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r~~~~lv~ln~~ 398 (424)
+| ..+..|++|..+|+.- -.+--..|.....+.++|.|+++.++++||.
T Consensus 388 ~GWvCEHRWrqI~~Mv~FrnAV--~~t~~~~w~d~g~nqIaF~Rg~kGF~A~Nn~ 440 (504)
T KOG2212|consen 388 NGWVCEHRWRQIRNMVNFRNAV--DGTPFTNWYDNGSNQIAFGRGNRGFIAFNND 440 (504)
T ss_pred CceeeechHHHHHHHHhhhhhc--CCccccceeeCCCcEEEEecCCccEEEEeCc
Confidence 24 4789999999999982 1222234555557899999999999999985
|
|
| >PLN03244 alpha-amylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=263.61 Aligned_cols=299 Identities=16% Similarity=0.234 Sum_probs=179.2
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCC
Q 014447 76 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 155 (424)
Q Consensus 76 ~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 155 (424)
+++|++++ ++|||.+|||+||++||++||+||||+|+||++.+....-. .|.+ ++. .|+ .. +
T Consensus 427 vt~fFAps-sRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~---~fDG-t~~---~Yf---~~-------~ 488 (872)
T PLN03244 427 VTNFFAAS-SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLS---LFDG-SND---CYF---HT-------G 488 (872)
T ss_pred cCcccccC-cccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCccccchh---hcCC-Ccc---cee---cc-------C
Confidence 78999999 99999999999999999999999999999999976421100 0111 110 011 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC-------------------------HH
Q 014447 156 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------------------PS 210 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~-------------------------~~ 210 (424)
..+ + ...| +...+|+.+++|+++|++++++|++++||||||+|++..|- ..
T Consensus 489 ~~g-~--~~~W-Gs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~ 564 (872)
T PLN03244 489 KRG-H--HKHW-GTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALM 564 (872)
T ss_pred CCC-c--cCCC-CCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHH
Confidence 000 0 1122 22469999999999999999999999999999999983331 12
Q ss_pred HHHHH---HHhcCC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccch----HHHHHHhcc---
Q 014447 211 ITKVY---MENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTK----GILQAAVQG--- 279 (424)
Q Consensus 211 ~~~~~---~~~~~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~----~~~~~~~~~--- 279 (424)
|++.+ +.+..| +++|||...+-+ . .. .-.. .+|+. ||+... ......+..
T Consensus 565 fL~laN~~ih~~~P~~itIAEDsS~~P--~-----vt---------~Pv~-~GGLG--FDYKWnMgwmdd~lkylk~~pd 625 (872)
T PLN03244 565 YLILANEILHALHPKIITIAEDATYYP--G-----LC---------EPTS-QGGLG--FDYYVNLSAPDMWLDFLDNIPD 625 (872)
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCc--C-----cc---------ccCC-CCCCC--ccceecCcchHHHHHHHHhCCC
Confidence 33333 566678 779999664311 0 00 0000 12222 444332 222222211
Q ss_pred hhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCc----cc-C-------CC--C----c--hhHHHHHHHHHcCCCee
Q 014447 280 ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQ----RL-W-------PF--P----S--DKVMLGYAYILTHPGTP 339 (424)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~----~~-~-------~~--~----~--~~~~~a~a~~l~~pG~P 339 (424)
.-+.......... .........+.|.||||.+-.. .. + .+ + + +..+++-++++++||.|
T Consensus 626 erw~~~~ItfsL~-~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~k 704 (872)
T PLN03244 626 HEWSMSKIVSTLI-ANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLGGKELLDRGCSLHKMIRLITFTIGGHA 704 (872)
T ss_pred cccCHHHHhhhhh-cccCCcceEEEEecccceeccccchHHhhhcccccccccccchhhhhhhHHHHHHHHHHHHccCcc
Confidence 0011111000000 0001123558899999994221 10 0 00 0 1 12355556788899987
Q ss_pred -EEecCCCC----------------------Cc---------chHHHHHHHHHHHHhcCCCCCCCeEEE--ecCCCEEEE
Q 014447 340 -CIFYDHFF----------------------DW---------GLKEAISKLAAVRNRNGINTASRVNIL--ASDADVYIA 385 (424)
Q Consensus 340 -~iyyG~~~----------------------~w---------~l~~~~~~L~~lR~~~~al~~G~~~~~--~~~~~v~~~ 385 (424)
++|||+|+ +| .+..|+|.|++|++++++|..|...+. ..++.|+||
T Consensus 705 kLnFMGNEFGhpe~~dfPr~gN~~s~~~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~~~d~e~kVIAF 784 (872)
T PLN03244 705 YLNFMGNEFGHPERIEFPMPSNNFSFSLANRCWDLLENEVHHHLFSFDKDLMDLDENEGILSRGLPNIHHVKDAAMVISF 784 (872)
T ss_pred ceeecccccCCchheeccccCCCccccccccCccccCChhHHHHHHHHHHHHHHHhcCcccccCCcEEeeecCCCCEEEE
Confidence 79999854 24 267799999999999999976643332 346689999
Q ss_pred EECCEEEEEECCCCC-------CCCcCCCCcEEEEeCCc
Q 014447 386 AIGDRVIMKIGPKMD-------IGNLIPSDFKVAADGTD 417 (424)
Q Consensus 386 ~r~~~~lv~ln~~~~-------~~~~~~~~~~~~~~~~~ 417 (424)
.|. .+|+|+|.+.. +|-..++.|++.++.+.
T Consensus 785 ~R~-~LLfVfNF~P~~sy~dYrIGVp~~G~Y~eILNSD~ 822 (872)
T PLN03244 785 MRG-PFLFIFNFHPSNSYEGYDVGVEEAGEYQIILNSDE 822 (872)
T ss_pred Eec-CEEEEEeCCCCCCccCCEECCCCCCeEEEEEeCCh
Confidence 996 58888887532 23333456666665543
|
|
| >KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=259.68 Aligned_cols=147 Identities=27% Similarity=0.440 Sum_probs=114.7
Q ss_pred CCcHHHHHhh-hhHHHHcCCCEEEeCCCCCCC---CCCCCCcccccCCCCCCCCCHH------HHHHHHHHHHHcCCEEE
Q 014447 39 GGWYNSLKNS-IPDLSNAGITHVWLPPPSQSV---APQGYMPGRLYDLDASKYGSQA------DLKSLIQAFRQKGIKCL 108 (424)
Q Consensus 39 ~G~~~gi~~~-L~ylk~lGv~~I~l~Pi~~~~---~~~gY~~~d~~~id~~~~Gt~e------dl~~Lv~~aH~~Gi~Vi 108 (424)
+| +.+.++| |++||.||+|+|+||||+|.. ..+||+|+.|+++- ++|||.+ |||.||++||..||-|+
T Consensus 251 ~g-Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFaps-srYgt~~s~~ri~efK~lVd~aHs~GI~Vl 328 (757)
T KOG0470|consen 251 GG-YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPS-SRYGTPESPCRINEFKELVDKAHSLGIEVL 328 (757)
T ss_pred cc-hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeeccc-ccccCCCcccchHHHHHHHHHHhhCCcEEe
Confidence 45 9999999 999999999999999999983 37999999999999 9999999 99999999999999999
Q ss_pred EeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 014447 109 ADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN 188 (424)
Q Consensus 109 lD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~ 188 (424)
||+|.||++.+..+ ....|.+-.+.. +++.+. .-+. ...+.--||+..|+|++++++.++
T Consensus 329 LDVV~sHaa~n~~d---~l~~fdGid~~~------Yf~~~~-r~~h----------~~~~~r~fn~~~~~V~rflL~nLr 388 (757)
T KOG0470|consen 329 LDVVHSHAAKNSKD---GLNMFDGIDNSV------YFHSGP-RGYH----------NSWCSRLFNYNHPVVLRFLLSNLR 388 (757)
T ss_pred hhhhhhhcccCcCC---cchhccCcCCce------EEEeCC-cccc----------cccccccccCCCHHHHHHHHHHHH
Confidence 99999999984321 122233211000 000000 0000 111122299999999999999999
Q ss_pred HHHHhcCCCeEEecccCCC
Q 014447 189 WLKTEIGFDGWRFDFVKGY 207 (424)
Q Consensus 189 ~w~~~~gvDGfR~D~a~~~ 207 (424)
||+.|++|||||+|.+..|
T Consensus 389 ~WVtEY~vDGFRFD~~ssm 407 (757)
T KOG0470|consen 389 WWVTEYHVDGFRFDLVSSM 407 (757)
T ss_pred HHHHheeccceEEcchhhh
Confidence 9999999999999998665
|
|
| >PRK14511 maltooligosyl trehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=264.46 Aligned_cols=190 Identities=19% Similarity=0.268 Sum_probs=138.8
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+++|++++++|+||++|||++|||+||+++. ++|||++.||+.|| |+|||.++|++||++||++||+||+|+|+||+
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~id-p~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~ 94 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRIN-PELGGEEGLRRLAAALRAHGMGLILDIVPNHM 94 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcC-CCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 5899999999999999999999999999975 68999999999999 99999999999999999999999999999999
Q ss_pred CCCCC--------------CCCcceee--cCC--C--------CCCC------C-------------CCCCCcccccCCC
Q 014447 117 TAERK--------------DGRGIYCI--FEG--G--------TSDD------R-------------LDWGPSFICRGDK 151 (424)
Q Consensus 117 ~~~~~--------------~~~~~~~~--~~~--~--------~~~~------~-------------~~w~~~~~~~~~~ 151 (424)
|.+++ ++..+|+. |.. + .+.. . ..|...+.....+
T Consensus 95 ~~~~~~n~ww~dvl~~g~~S~y~~~Fdidw~~~~g~~llP~LG~~y~~~l~~g~l~l~~~~~g~~~~~y~d~~fPl~p~t 174 (879)
T PRK14511 95 AVGGPDNPWWWDVLEWGRSSPYADFFDIDWDSGEGKVLLPVLGDQYGEVLAAGELRLAFDDDGAFVLRYYDHRFPIAPGT 174 (879)
T ss_pred cCcCccCHHHHHHHHhCCCCCccCceeeeecCCCCceecCccCCcccchhhCCceEEeecCCCceEEEEcCccCCCCCCc
Confidence 98763 11223331 210 0 0000 0 0011001000000
Q ss_pred -------------------------------------------------------------------------ccC--CC
Q 014447 152 -------------------------------------------------------------------------EYS--DG 156 (424)
Q Consensus 152 -------------------------------------------------------------------------~~~--~~ 156 (424)
.|. +.
T Consensus 175 ~~~il~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~n~~~~~~~~~L~~ll~~Q~YRLa~Wr~a~~ 254 (879)
T PRK14511 175 YALILRHRLDLEALAAEFPALGELESILTAAQHLASPAVRAFIEQALAAFDGRKGDGRSRLDRLLERQHYRLASWRVADD 254 (879)
T ss_pred hhhhhhcchhHHHHHHHHhhhhcccchhhHHHhhcChHHHHHHHHHHHHhcCCCCchhhhHHHHHHhcceeccchhccCc
Confidence 011 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC--CHHHHHHHHHhcC-CCeEEeeec
Q 014447 157 QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY--APSITKVYMENTS-PDFAVGEKW 229 (424)
Q Consensus 157 ~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~--~~~~~~~~~~~~~-p~~~v~E~~ 229 (424)
.-||.......++.-+.-++|+|.+..-..+..|+++=-|||+|+|.+..+ |...++.+-+... |.++|.|-.
T Consensus 255 eiNYRRFFdIn~L~~lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL~DP~~Yl~rLr~~~~~~~yivvEKI 330 (879)
T PRK14511 255 EINYRRFFDVNTLAAVRVEDPEVFEETHALILRLLREGLVDGLRIDHPDGLADPRGYLRRLRRRTGRGAYIVVEKI 330 (879)
T ss_pred ccCcceeecchhheeeecCCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccccCHHHHHHHHHhccCCCCeEEEEec
Confidence 234555555577777778999999999999999999888999999999998 4566777644433 567888865
|
|
| >smart00642 Aamy Alpha-amylase domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-27 Score=206.40 Aligned_cols=93 Identities=28% Similarity=0.554 Sum_probs=88.3
Q ss_pred ceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC----CCCCCCcccccCCCCCCCCCHHHHHHHHHH
Q 014447 24 ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV----APQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (424)
Q Consensus 24 ~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~----~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~ 99 (424)
+++.+.|. ++.++++|||++++++|+|||+|||++|||+||++++ .++||++.||++++ |+|||++||++||++
T Consensus 1 qi~~~~F~-~~~~~~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~-~~~Gt~~d~~~lv~~ 78 (166)
T smart00642 1 QIYPDRFA-DGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQID-PRFGTMEDFKELVDA 78 (166)
T ss_pred Ceeecccc-CCCCCCCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCC-cccCCHHHHHHHHHH
Confidence 47889999 6778889999999999999999999999999999988 68999999999999 999999999999999
Q ss_pred HHHcCCEEEEeeecccCCC
Q 014447 100 FRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 100 aH~~Gi~VilD~v~NH~~~ 118 (424)
||++||+||+|+|+||++.
T Consensus 79 ~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 79 AHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHCCCEEEEEECCCCCCC
Confidence 9999999999999999974
|
|
| >PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-21 Score=211.52 Aligned_cols=79 Identities=22% Similarity=0.375 Sum_probs=76.1
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+++|++++++|+||++|||++|||+||+++. ++|||++.||+.|| |+|||+++|++||++||++||+||+|+|+||+
T Consensus 754 ~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~id-p~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~ 832 (1693)
T PRK14507 754 DFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQIN-PEIGGEEGFERFCAALKAHGLGQLLDIVPNHM 832 (1693)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccC-cccCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 6899999999999999999999999999963 68999999999999 99999999999999999999999999999999
Q ss_pred CC
Q 014447 117 TA 118 (424)
Q Consensus 117 ~~ 118 (424)
+.
T Consensus 833 ~~ 834 (1693)
T PRK14507 833 GV 834 (1693)
T ss_pred CC
Confidence 95
|
|
| >TIGR01531 glyc_debranch glycogen debranching enzymye | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-18 Score=184.74 Aligned_cols=82 Identities=13% Similarity=0.267 Sum_probs=77.5
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCC-CCCCCCCCCcccccCCCCCCCC----CHHHHHHHHHHHHHc-CCEEEEeee
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPS-QSVAPQGYMPGRLYDLDASKYG----SQADLKSLIQAFRQK-GIKCLADMV 112 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~-~~~~~~gY~~~d~~~id~~~~G----t~edl~~Lv~~aH~~-Gi~VilD~v 112 (424)
-|+|.++.++|+|||++|+|.||++||+ .+++++.|++.||.+|| |.+| +.+||++||+++|++ ||++|+|+|
T Consensus 128 mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~id-P~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV 206 (1464)
T TIGR01531 128 LGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLN-QHFKSQKDGKNDVQALVEKLHRDWNVLSITDIV 206 (1464)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcC-hhhcccCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 5999999999999999999999999999 46788999999999999 9994 899999999999997 999999999
Q ss_pred cccCCCCCC
Q 014447 113 INHRTAERK 121 (424)
Q Consensus 113 ~NH~~~~~~ 121 (424)
+||||.+|+
T Consensus 207 ~NHTa~ds~ 215 (1464)
T TIGR01531 207 FNHTANNSP 215 (1464)
T ss_pred ecccccCCH
Confidence 999999874
|
glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground. |
| >COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-19 Score=177.62 Aligned_cols=80 Identities=23% Similarity=0.448 Sum_probs=75.9
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+=||...++.||||++|||.++|++||+... +.|||+|+|...|+ |.+|+.|.|.+||.++|++||.+|+|+|+||+
T Consensus 15 gFtF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~In-PeLGG~egl~rLvaalk~~GlGlI~DIVPNHM 93 (889)
T COG3280 15 GFTFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEIN-PELGGEEGLERLVAALKSRGLGLIVDIVPNHM 93 (889)
T ss_pred CCCHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccC-hhhcChHHHHHHHHHHHhcCCceEEEecccch
Confidence 3479999999999999999999999999964 57999999999999 99999999999999999999999999999999
Q ss_pred CCC
Q 014447 117 TAE 119 (424)
Q Consensus 117 ~~~ 119 (424)
+..
T Consensus 94 av~ 96 (889)
T COG3280 94 AVG 96 (889)
T ss_pred hcc
Confidence 876
|
|
| >PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-11 Score=116.94 Aligned_cols=82 Identities=16% Similarity=0.306 Sum_probs=73.8
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCC-CCCCCCCcccccCCCCCCCCC------HHHHHHHHHHHH-HcCCEEEEe
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGS------QADLKSLIQAFR-QKGIKCLAD 110 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~Gt------~edl~~Lv~~aH-~~Gi~VilD 110 (424)
-|.+.+..++|..++++|+|.|+++|+++- .+...|++.|..++| |.+.. .++++++|++++ +.||..|.|
T Consensus 18 ~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~-~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~D 96 (423)
T PF14701_consen 18 MGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFD-PDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTD 96 (423)
T ss_pred cCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcC-hhhcCCCccccHHHHHHHHHHHHHHcCceEEEE
Confidence 489999999999999999999999999984 457899999999999 77654 379999999996 799999999
Q ss_pred eecccCCCCCC
Q 014447 111 MVINHRTAERK 121 (424)
Q Consensus 111 ~v~NH~~~~~~ 121 (424)
+|+|||+.+++
T Consensus 97 vV~NHtA~nS~ 107 (423)
T PF14701_consen 97 VVLNHTANNSP 107 (423)
T ss_pred EeeccCcCCCh
Confidence 99999999763
|
|
| >PF14872 GHL5: Hypothetical glycoside hydrolase 5 | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.2e-10 Score=109.68 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=104.6
Q ss_pred CCCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHH---------------cCCCEEEeCCCCCCC---------------
Q 014447 20 FTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSN---------------AGITHVWLPPPSQSV--------------- 69 (424)
Q Consensus 20 ~~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~---------------lGv~~I~l~Pi~~~~--------------- 69 (424)
......|+|+=.-.. .-.|+|.|+++--..|.+ .|+++|+|+||=+..
T Consensus 175 v~~P~nILQiHv~TA--sp~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~ 252 (811)
T PF14872_consen 175 VPAPRNILQIHVGTA--SPEGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSI 252 (811)
T ss_pred cCCCceeEEEecCCC--CCCcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeee
Confidence 344567777764221 226999999887666643 599999999984311
Q ss_pred ------------------------------CCCCCCc--ccccCCCCCCCCC--HHHHHHHHHHHHH---cCCEEEEeee
Q 014447 70 ------------------------------APQGYMP--GRLYDLDASKYGS--QADLKSLIQAFRQ---KGIKCLADMV 112 (424)
Q Consensus 70 ------------------------------~~~gY~~--~d~~~id~~~~Gt--~edl~~Lv~~aH~---~Gi~VilD~v 112 (424)
.+|||++ ....+.+|.-++| ++|+-.||..+|. ..|+||.|+|
T Consensus 253 ~~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlV 332 (811)
T PF14872_consen 253 RPEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLV 332 (811)
T ss_pred cccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeee
Confidence 2467874 3345556334666 6999999999995 7899999999
Q ss_pred cccCCCCCCC-CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 014447 113 INHRTAERKD-GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLK 191 (424)
Q Consensus 113 ~NH~~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~ 191 (424)
+-|.-+-... -++. |-.+.+.|. -|+|+.+|.||+.+++.=+.=+
T Consensus 333 yGHADNQ~~~LLn~~--------------------------flkGPnMYG--------Qdlnhq~P~VRAILLEmQRRK~ 378 (811)
T PF14872_consen 333 YGHADNQALDLLNRR--------------------------FLKGPNMYG--------QDLNHQNPVVRAILLEMQRRKI 378 (811)
T ss_pred cccccchhhHhhhhh--------------------------hccCCcccc--------ccccccChHHHHHHHHHHHhhc
Confidence 9998443210 0111 111222221 1499999999999999888778
Q ss_pred HhcCCCeEEecccCCC
Q 014447 192 TEIGFDGWRFDFVKGY 207 (424)
Q Consensus 192 ~~~gvDGfR~D~a~~~ 207 (424)
+ +|+||+|+|.+..+
T Consensus 379 n-~GaDGIRVDGgQDF 393 (811)
T PF14872_consen 379 N-TGADGIRVDGGQDF 393 (811)
T ss_pred c-cCCceeEecccccc
Confidence 7 99999999998765
|
|
| >KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.1e-09 Score=105.86 Aligned_cols=81 Identities=15% Similarity=0.300 Sum_probs=73.2
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCC-CCCCCCCcccccCCCCCCCC------CHHHHHHHHHHHHH-cCCEEEEe
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYG------SQADLKSLIQAFRQ-KGIKCLAD 110 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~G------t~edl~~Lv~~aH~-~Gi~VilD 110 (424)
-|.|.....+|.-.|+.|+|.|+++|+++- .+...|...|-.+++ +++- +.||.++||+.||+ -+|--|-|
T Consensus 138 LGpl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~-~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 138 LGPLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELN-PDFSRPNRKYSFEDVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred cCChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcC-hhhhccCCCCCHHHHHHHHHHHHhhcCeeeeeh
Confidence 488999999999999999999999999994 467789999988888 7766 78999999999995 89999999
Q ss_pred eecccCCCCC
Q 014447 111 MVINHRTAER 120 (424)
Q Consensus 111 ~v~NH~~~~~ 120 (424)
+|+||++.++
T Consensus 217 vV~NHtAnns 226 (1521)
T KOG3625|consen 217 VVYNHTANNS 226 (1521)
T ss_pred hhhhccccCC
Confidence 9999999876
|
|
| >PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.9e-08 Score=96.99 Aligned_cols=204 Identities=22% Similarity=0.344 Sum_probs=123.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---------hcCCCeEEecccCCCCHHHHHHH---HHhc----------C
Q 014447 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWRFDFVKGYAPSITKVY---MENT----------S 220 (424)
Q Consensus 163 ~~~~~~~~dln~~np~v~~~l~~~~~~w~~---------~~gvDGfR~D~a~~~~~~~~~~~---~~~~----------~ 220 (424)
+..+----|+|=+||.|+.+.++++-|++. +-..||||+||+..+..+.++.. +++. .
T Consensus 137 GyEfLLaNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYgv~~~~a~An 216 (809)
T PF02324_consen 137 GYEFLLANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYGVDKNDANAN 216 (809)
T ss_dssp S-S--SSEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-TTTBHHHHC
T ss_pred cceeEEeccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhCCCcChhhHh
Confidence 334445567899999999999999999996 67899999999999999877654 2321 3
Q ss_pred CCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc------hhhhhhhhc-C-CCC
Q 014447 221 PDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG------ELWRLKDSN-G-KPP 292 (424)
Q Consensus 221 p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~------~~~~~~~~~-~-~~~ 292 (424)
..+.|-|.|.. .-..|+...+.....+|..++..+...+.. .+.++.... . +..
T Consensus 217 ~HlSilE~ws~------------------nd~~y~~~~g~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~ 278 (809)
T PF02324_consen 217 KHLSILEAWSS------------------NDPDYVKDTGNPQLTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSN 278 (809)
T ss_dssp TC--EESSSTT------------------THHHHHHHTTSSSBEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSE
T ss_pred hhheeeecccc------------------CChHHHhcCCCceeeecHHHHHHHHHHhcCCccccccHHHHhhhhhccccc
Confidence 45778899863 223777777777778898888777766532 233333311 0 000
Q ss_pred CCcCcCCCcceecccCCCCCc-----------C---cccCCC-----------------------CchhHHHHHHHHHcC
Q 014447 293 GFIGILPQNAVTFIDNHDTGS-----------T---QRLWPF-----------------------PSDKVMLGYAYILTH 335 (424)
Q Consensus 293 ~~~~~~~~~~~~f~~nHD~~r-----------~---~~~~~~-----------------------~~~~~~~a~a~~l~~ 335 (424)
....-.......|+.+||.+- . .....+ ..-.+-.++|+||+=
T Consensus 279 d~~en~a~pNYsFvrAHDsevQ~vI~~II~~~i~~~~dg~t~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsaYAllLtN 358 (809)
T PF02324_consen 279 DSTENEAQPNYSFVRAHDSEVQTVIAQIIKDKINPNSDGLTFTLDQLKQAFEIYNADQKKTDKKYTQYNIPSAYALLLTN 358 (809)
T ss_dssp E--SSESS-EEEES-BSSTTTHHHHHHHHHHHT-TTTCTTC--HHHHHHHHHHHHHHHTSSS-SSS-S-HHHHHHHHHH-
T ss_pred CCcCCcccCceeeeecccHHHHHHHHHHHHhhcCCcccCccCCHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHhC
Confidence 000001233467999999941 0 000111 111345799999997
Q ss_pred C-CeeEEecCCCCC-------c--chHHHHHHHHHHHHhcCCCCCCCeEEEe-----cCCCEEEEEE
Q 014447 336 P-GTPCIFYDHFFD-------W--GLKEAISKLAAVRNRNGINTASRVNILA-----SDADVYIAAI 387 (424)
Q Consensus 336 p-G~P~iyyG~~~~-------w--~l~~~~~~L~~lR~~~~al~~G~~~~~~-----~~~~v~~~~r 387 (424)
. .+|.|||||-+. - ..++.|..|++-|.++-+ |...+-. .+.+++.-.|
T Consensus 359 KDTVPRVYYGDLYtDdGQYMa~KSpYyDaI~tLLKaRikYva---GGQtM~~~~~~~~~~~vLtSVR 422 (809)
T PF02324_consen 359 KDTVPRVYYGDLYTDDGQYMATKSPYYDAITTLLKARIKYVA---GGQTMAVTYLNGDNSGVLTSVR 422 (809)
T ss_dssp SSSEEEEEHHHHBESSSSTTTSB-TTHHHHHHHHHHHHHH-----S-EEEEE--EEETTTSEEEEEE
T ss_pred CCCCceEEecccccccchhhhhcCchHHHHHHHHHHHHHhhc---CCceeeeecccCCCCceEEEEe
Confidence 5 999999998432 1 369999999999999853 3333322 3456888776
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A. |
| >PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.1e-08 Score=99.79 Aligned_cols=94 Identities=27% Similarity=0.425 Sum_probs=62.5
Q ss_pred ceEEEeec-CCCCC--CCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC---------CCCCCcccccCCC---CCCCC
Q 014447 24 ALLFQGFN-WESSN--KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---------PQGYMPGRLYDLD---ASKYG 88 (424)
Q Consensus 24 ~v~~~~f~-~ds~~--~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~---------~~gY~~~d~~~id---~~~~G 88 (424)
+|||+.|. ...++ ...=+-.-|.+..+-+|++|||..||-|-..+.. ..||+-+|.|++. |.+||
T Consensus 565 qvIYEgFSNFQ~~~t~~~eytN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptKYG 644 (809)
T PF02324_consen 565 QVIYEGFSNFQDFPTTPSEYTNVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTKYG 644 (809)
T ss_dssp -EEEE---TTB---SSGGGSHHHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BTTB
T ss_pred chhhccccccccCCCChHHHHHHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCCCC
Confidence 59999994 11111 1123456788889999999999999999887542 3699999999998 88999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
|.|||+.-|+++|+.||+||.|+|++.+-
T Consensus 645 s~~dL~~AikALH~~GiqviaDwVpdQiY 673 (809)
T PF02324_consen 645 SVEDLRNAIKALHAAGIQVIADWVPDQIY 673 (809)
T ss_dssp -HHHHHHHHHHHHHTT-EEEEEE-TSEE-
T ss_pred CHHHHHHHHHHHHHcCcchhhhhchHhhh
Confidence 99999999999999999999999999883
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A. |
| >PF14871 GHL6: Hypothetical glycosyl hydrolase 6 | Back alignment and domain information |
|---|
Probab=98.57 E-value=9e-07 Score=73.62 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=80.3
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCc
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG 125 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~ 125 (424)
.+-+++||++|+++|.+.-= .-...-|-|+..-..+ |.++ .+-|+++|++||++||+|++=+-++ .-..-...+.
T Consensus 3 ~~~~~~lk~~~v~si~i~a~--~h~g~ayYPt~~~~~h-p~L~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HP 77 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAK--CHGGYAYYPTKVGPRH-PGLK-RDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHP 77 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcc--cccEEEEccCCCCcCC-CCCC-cCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCC
Confidence 35678999999999998520 0011234466666677 8888 7889999999999999999766665 2111111223
Q ss_pred ceeec-CCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014447 126 IYCIF-EGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (424)
Q Consensus 126 ~~~~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (424)
+|..- .+|++.... ....++...+...+|.. +++++.++..++.+.+|||=+|.
T Consensus 78 eW~~~~~~G~~~~~~-----------------------~~~~~~~~~~c~ns~Y~-e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 78 EWFVRDADGRPMRGE-----------------------RFGYPGWYTCCLNSPYR-EFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred ceeeECCCCCCcCCC-----------------------CcCCCCceecCCCccHH-HHHHHHHHHHHHcCCCCEEEecC
Confidence 34321 112210000 00111122244445554 89999999999899999998874
|
|
| >PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-06 Score=83.36 Aligned_cols=142 Identities=15% Similarity=0.172 Sum_probs=81.3
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCC--CCCCCcccccCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLDASKYG--SQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~~G--t~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+-+.+.+.|+.|+++|+|+|.+-=-..+.. ...+.+..-+... ...+ +-+=|+.+|++||++||+|..=+.+...
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g-~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~ 95 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTG-KQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFN 95 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCC-CCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecC
Confidence 567788999999999999998742212110 1122222111111 1111 2567999999999999999976644332
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 014447 117 TAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGF 196 (424)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gv 196 (424)
+..... . ....+.|......+....+.+. .....-||-.+|+||+++++.++..++.+.|
T Consensus 96 ~~~~~~-------~----~~~~p~~~~~~~~~~~~~~~~~---------~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Ydv 155 (311)
T PF02638_consen 96 APDVSH-------I----LKKHPEWFAVNHPGWVRTYEDA---------NGGYYWLNPGHPEVRDYIIDIVKEIVKNYDV 155 (311)
T ss_pred CCchhh-------h----hhcCchhheecCCCceeecccC---------CCCceEECCCCHHHHHHHHHHHHHHHhcCCC
Confidence 221000 0 0001122110000000000000 1122239999999999999999999999999
Q ss_pred CeEEecc
Q 014447 197 DGWRFDF 203 (424)
Q Consensus 197 DGfR~D~ 203 (424)
||+-+|-
T Consensus 156 DGIhlDd 162 (311)
T PF02638_consen 156 DGIHLDD 162 (311)
T ss_pred CeEEecc
Confidence 9999994
|
|
| >smart00810 Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.8e-06 Score=59.00 Aligned_cols=56 Identities=61% Similarity=1.098 Sum_probs=51.6
Q ss_pred CCCCCeEEEecCCCEEEEEECCEEEEEECCCCCCCCcCCCCcEEEEeCCcEEEEec
Q 014447 368 NTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 423 (424)
Q Consensus 368 l~~G~~~~~~~~~~v~~~~r~~~~lv~ln~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (424)
-.+...+++..+.++++...+++++|-|...++.+++.|.+|+++++|.+|+||++
T Consensus 6 ~~~S~v~I~~Ae~dlY~A~Id~kv~~KiGp~~~~~~~~P~~w~~a~sG~~yaVWek 61 (61)
T smart00810 6 HSRSSLKILAAEADLYVAMIDEKVIMKIGPRYDVGNLIPSGFHLAASGNDYAVWEK 61 (61)
T ss_pred CCCCceEEEEecCCcEEEEeCCeEEEEECCCCCcCccCCCCCEEEEECCCEEEEeC
Confidence 34567888899999999999999999999999999999999999999999999975
|
This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C-terminus. This domain is organised as a five-stranded anti-parallel beta-sheet. |
| >PRK14508 4-alpha-glucanotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00013 Score=74.35 Aligned_cols=45 Identities=16% Similarity=0.117 Sum_probs=38.0
Q ss_pred CceEEEeecCCCCCCCCCcHH-HHHhhhhHHHHcCCCEEEeCCCCCC
Q 014447 23 PALLFQGFNWESSNKAGGWYN-SLKNSIPDLSNAGITHVWLPPPSQS 68 (424)
Q Consensus 23 ~~v~~~~f~~ds~~~~~G~~~-gi~~~L~ylk~lGv~~I~l~Pi~~~ 68 (424)
.+|..|+|.. ...-|+|||. ++.+-++.+++.|++.|+|+|++..
T Consensus 7 ~Gv~~~l~SL-~~~~GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~ 52 (497)
T PRK14508 7 SGILLHITSL-PGSYGIGDFGKGAYEFIDFLAEAGQSYWQILPLGPT 52 (497)
T ss_pred eEEEeccccC-CCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 3688898876 2334689996 9999999999999999999999874
|
|
| >PLN02635 disproportionating enzyme | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00021 Score=73.03 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=37.5
Q ss_pred ceEEEeecCCCCCCCCCcHHHHH-hhhhHHHHcCCCEEEeCCCCCC
Q 014447 24 ALLFQGFNWESSNKAGGWYNSLK-NSIPDLSNAGITHVWLPPPSQS 68 (424)
Q Consensus 24 ~v~~~~f~~ds~~~~~G~~~gi~-~~L~ylk~lGv~~I~l~Pi~~~ 68 (424)
+|+.|+|...+. -|+|||.... +-++.+++.|.+.++|+|++..
T Consensus 31 Gvll~l~SLps~-~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt 75 (538)
T PLN02635 31 GILLHPTSLPGP-YGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPP 75 (538)
T ss_pred EEEEccccCCCC-CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 699999987653 4679998755 7899999999999999999875
|
|
| >PF07821 Alpha-amyl_C2: Alpha-amylase C-terminal beta-sheet domain; InterPro: IPR012850 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.5e-05 Score=52.08 Aligned_cols=52 Identities=60% Similarity=0.986 Sum_probs=43.3
Q ss_pred CCCCCeEEEecCCCEEEEEECCEEEEEECCCCCCCCcCC--CCcEEEEeCCcEEEEec
Q 014447 368 NTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIP--SDFKVAADGTDYAVWEK 423 (424)
Q Consensus 368 l~~G~~~~~~~~~~v~~~~r~~~~lv~ln~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 423 (424)
-.+...+++..+.++|+...+++++|-|+. +++.| .+|++++.|.+|+||++
T Consensus 6 ~~~S~v~I~~Ae~d~YaA~Id~kv~~KiGp----~~~~P~~~~w~~a~~G~dyaVWek 59 (59)
T PF07821_consen 6 HCRSKVKILAAEADLYAAIIDDKVIMKIGP----RDWSPSGSGWKLAASGDDYAVWEK 59 (59)
T ss_dssp -TT--EEEEEEETTEEEEEETTTEEEEESS-----GGS---TTEEEEEEETTEEEEEE
T ss_pred CCCCceEEEEecCCcEEEEECCeEEEEECC----CccccCCCCcEEEeECCcEEEEeC
Confidence 345678889999999999999999999999 57777 69999999999999975
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C terminus. This domain is organised as a five-stranded anti-parallel beta-sheet [, ]. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0005975 carbohydrate metabolic process; PDB: 1AVA_B 1BG9_A 1AMY_A 1RP8_A 2QPU_A 3BSG_A 2QPS_A 3BSH_A 1RP9_A 1HT6_A .... |
| >COG1649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.2e-05 Score=73.00 Aligned_cols=142 Identities=15% Similarity=0.059 Sum_probs=82.1
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCC----ccccc--CCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM----PGRLY--DLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~----~~d~~--~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.+=..+.+.|+.|+.||||+|+.. ....++.-|. +..-. -+- ..-++-+=|+.+|++||+|||+|+.=+-+
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~q--V~~~G~~lypS~~~p~s~~~~~~~-~~~~g~DpLa~~I~~AHkr~l~v~aWf~~ 137 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQ--VWNDGDALYPSAVLPWSDGLPGVL-GVDPGYDPLAFVIAEAHKRGLEVHAWFNP 137 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEE--EecCccccccccccccccCcCccc-CCCCCCChHHHHHHHHHhcCCeeeechhh
Confidence 455678889999999999999943 2222211111 11100 000 11234567999999999999999865544
Q ss_pred ccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 014447 114 NHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (424)
Q Consensus 114 NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~ 193 (424)
--++........ .++.|..... +++.+. .+..+....=||-..|+|++++.+.+...+..
T Consensus 138 ~~~a~~~s~~~~-----------~~p~~~~~~~--~~~~~~-------~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~ 197 (418)
T COG1649 138 YRMAPPTSPLTK-----------RHPHWLTTKR--PGWVYV-------RHQGWGKRVWLDPGIPEVQDFITSLVVEVVRN 197 (418)
T ss_pred cccCCCCChhHh-----------hCCCCcccCC--CCeEEE-------ecCCceeeeEeCCCChHHHHHHHHHHHHHHhC
Confidence 444432211000 0111111100 001110 00000022238999999999999999999999
Q ss_pred cCCCeEEeccc
Q 014447 194 IGFDGWRFDFV 204 (424)
Q Consensus 194 ~gvDGfR~D~a 204 (424)
|.|||+-+|-.
T Consensus 198 YdvDGIQfDd~ 208 (418)
T COG1649 198 YDVDGIQFDDY 208 (418)
T ss_pred CCCCceeccee
Confidence 99999999974
|
|
| >cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00027 Score=68.10 Aligned_cols=135 Identities=14% Similarity=0.103 Sum_probs=88.1
Q ss_pred cHHHHHhhhhHHHHcC--CCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-+.+.+.++.+++.| ++.|+|=.=+.. +|...| +..|+.+|- +.+.||+++|++|++|++-+.+ +.+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~----~~~~~~-f~~d~~~FP---d~~~~i~~l~~~G~~~~~~~~P-~i~~ 92 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMK----EFQWCD-FEFDPDRFP---DPEGMLSRLKEKGFKVCLWINP-YIAQ 92 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEeccccc----CCccee-eEECcccCC---CHHHHHHHHHHCCCeEEEEecC-CCCC
Confidence 5677888899999999 777887653331 232233 445635676 4789999999999999999886 5655
Q ss_pred CCCCC----CcceeecCC-CCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 014447 119 ERKDG----RGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (424)
Q Consensus 119 ~~~~~----~~~~~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~ 193 (424)
+++.. ...|+.... +++.... .| -....-+|+.||++++...+.++.+.+
T Consensus 93 ~~~~~~e~~~~g~~v~~~~g~~~~~~------------~w------------~g~~~~~Dftnp~a~~w~~~~~~~~~~- 147 (308)
T cd06593 93 KSPLFKEAAEKGYLVKKPDGSVWQWD------------LW------------QPGMGIIDFTNPDACKWYKDKLKPLLD- 147 (308)
T ss_pred CchhHHHHHHCCeEEECCCCCeeeec------------cc------------CCCcccccCCCHHHHHHHHHHHHHHHH-
Confidence 44310 112221110 0000000 00 011223899999999999999999988
Q ss_pred cCCCeEEecccCCCCH
Q 014447 194 IGFDGWRFDFVKGYAP 209 (424)
Q Consensus 194 ~gvDGfR~D~a~~~~~ 209 (424)
.|||||-+|....+|.
T Consensus 148 ~Gid~~~~D~~e~~p~ 163 (308)
T cd06593 148 MGVDCFKTDFGERIPT 163 (308)
T ss_pred hCCcEEecCCCCCCCc
Confidence 9999999998876654
|
YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes. |
| >PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00078 Score=75.88 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=39.4
Q ss_pred ceEEEeecCCCCCC-CCCcHHHHHhhhhHHHHcCCCEEEeCCCCC
Q 014447 24 ALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPSQ 67 (424)
Q Consensus 24 ~v~~~~f~~ds~~~-~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~ 67 (424)
.+..|+|...|..+ |+|||.++.+-++.+++.|.+.|+|+|++.
T Consensus 726 Gv~~~l~sLrs~~~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~ 770 (1221)
T PRK14510 726 GILMHLYSLRSQRPWGIGDFEELYALVDFLAEGGQSLWGVNPLHP 770 (1221)
T ss_pred EEEEccccCCCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 58889998887554 579999999999999999999999999986
|
|
| >PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00013 Score=74.86 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=32.3
Q ss_pred EeecCCCCCC-CCCcH-HHHHhhhhHHHHcCCCEEEeCCCCCCCC--CCCCCcccccCCCCCCC
Q 014447 28 QGFNWESSNK-AGGWY-NSLKNSIPDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLDASKY 87 (424)
Q Consensus 28 ~~f~~ds~~~-~~G~~-~gi~~~L~ylk~lGv~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~~ 87 (424)
|+|...|..+ |+||| .++.+-++.+++.|+..++|.|+..... +..|++.+-+.+| |-|
T Consensus 2 ~l~SLrs~~~~GIGDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alN-Ply 64 (496)
T PF02446_consen 2 PLYSLRSPRSWGIGDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALN-PLY 64 (496)
T ss_dssp -GGGS-SSS--SS--SSHHHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS---GGG
T ss_pred CCCcCCCCCCCceecHHHHHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCC-hHH
Confidence 4555455443 58999 9999999999999999999999997532 3368877777777 444
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A. |
| >PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00012 Score=56.66 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEe----cCCCEEEEEE---CCEEEEEECCCCC
Q 014447 354 AISKLAAVRNRNGINTASRVNILA----SDADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 354 ~~~~L~~lR~~~~al~~G~~~~~~----~~~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
+||+||++|+++|+|+.|....+. .++.++++.| +++++|++|.+.+
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~ 54 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSDE 54 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCCC
Confidence 699999999999999999877655 3556777777 4577888887654
|
It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A .... |
| >PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0017 Score=64.25 Aligned_cols=138 Identities=17% Similarity=0.122 Sum_probs=82.2
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCC-CCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCC
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPP-PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~P-i~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~ 120 (424)
-..|.+.++.++++|++.+.|== -+......--...|+ .+|+.+|- +.++.|++.+|++||+.-|=+-+--++.++
T Consensus 57 e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW-~~~~~kFP--~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S 133 (394)
T PF02065_consen 57 EEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDW-EPDPKKFP--NGLKPLADYIHSLGMKFGLWFEPEMVSPDS 133 (394)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBE-CBBTTTST--THHHHHHHHHHHTT-EEEEEEETTEEESSS
T ss_pred HHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCce-eEChhhhC--CcHHHHHHHHHHCCCeEEEEeccccccchh
Confidence 45577788899999999988742 222211111112333 34534664 359999999999999999988777666655
Q ss_pred CCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEE
Q 014447 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWR 200 (424)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR 200 (424)
+.... .++|.-... +... . ....+.-||+++|+|++++.+.+..++++.|||.|-
T Consensus 134 ~l~~~------------hPdw~l~~~--~~~~-~----------~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK 188 (394)
T PF02065_consen 134 DLYRE------------HPDWVLRDP--GRPP-T----------LGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIK 188 (394)
T ss_dssp CHCCS------------SBGGBTCCT--TSE--E----------CBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred HHHHh------------CccceeecC--CCCC-c----------CcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 42111 122321100 0000 0 001112399999999999999999888889999999
Q ss_pred ecccCCC
Q 014447 201 FDFVKGY 207 (424)
Q Consensus 201 ~D~a~~~ 207 (424)
+|.-..+
T Consensus 189 ~D~n~~~ 195 (394)
T PF02065_consen 189 WDFNRDI 195 (394)
T ss_dssp EE-TS-T
T ss_pred eccccCC
Confidence 9987555
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A .... |
| >cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0023 Score=61.47 Aligned_cols=132 Identities=17% Similarity=0.271 Sum_probs=83.1
Q ss_pred cHHHHHhhhhHHHHcC--CCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-+.+.+.++.+++.| ++.|+|=-=+.. ++ .| +..|+.+|- +.++||+++|++|+|+++=+-+ +.+.
T Consensus 28 s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~--g~-f~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~P-~i~~ 96 (303)
T cd06592 28 NQETVLNYAQEIIDNGFPNGQIEIDDNWET----CY--GD-FDFDPTKFP---DPKGMIDQLHDLGFRVTLWVHP-FINT 96 (303)
T ss_pred CHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cC--Cc-cccChhhCC---CHHHHHHHHHHCCCeEEEEECC-eeCC
Confidence 4677888889999988 467776432211 11 23 345524665 4899999999999999998888 4544
Q ss_pred CCCC----CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 014447 119 ERKD----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLKTE 193 (424)
Q Consensus 119 ~~~~----~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~np~v~~~l~~~~~~w~~~ 193 (424)
+++. ....+...... +. .......+ ....-+|+.||++++...+.++.++.+
T Consensus 97 ~s~~~~e~~~~g~~vk~~~----------------------g~-~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~ 153 (303)
T cd06592 97 DSENFREAVEKGYLVSEPS----------------------GD-IPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEK 153 (303)
T ss_pred CCHHHHhhhhCCeEEECCC----------------------CC-CCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHH
Confidence 4321 11112111100 00 00000011 112238999999999999999999966
Q ss_pred cCCCeEEecccCC
Q 014447 194 IGFDGWRFDFVKG 206 (424)
Q Consensus 194 ~gvDGfR~D~a~~ 206 (424)
.|||||-+|....
T Consensus 154 ~Gvdg~w~D~~E~ 166 (303)
T cd06592 154 YGIDSFKFDAGEA 166 (303)
T ss_pred hCCcEEEeCCCCc
Confidence 9999999999754
|
Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >TIGR00217 malQ 4-alpha-glucanotransferase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.017 Score=59.36 Aligned_cols=44 Identities=14% Similarity=-0.034 Sum_probs=37.5
Q ss_pred ceEEEeecCCCCCCCCCcHHHHHh-hhhHHHHcCCCEEEeCCCCCC
Q 014447 24 ALLFQGFNWESSNKAGGWYNSLKN-SIPDLSNAGITHVWLPPPSQS 68 (424)
Q Consensus 24 ~v~~~~f~~ds~~~~~G~~~gi~~-~L~ylk~lGv~~I~l~Pi~~~ 68 (424)
+|..|+|...|. -|+|||..+.. -++.+++-|....+|.|+.+.
T Consensus 17 Gvll~l~SL~s~-~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~ 61 (513)
T TIGR00217 17 GILLQLYSLPSE-WGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPA 61 (513)
T ss_pred EEEeccccCCCC-CCccChHHHHHHHHHHHHHcCCcEEEeCCCCCC
Confidence 699999988877 67899999985 468889999999999998873
|
This enzyme is known as amylomaltase and disproportionating enzyme. |
| >PRK09936 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0037 Score=58.07 Aligned_cols=191 Identities=14% Similarity=0.170 Sum_probs=105.4
Q ss_pred CccccchhhhHhhhhccCCCCCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCccccc
Q 014447 1 MSTLKSFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLY 80 (424)
Q Consensus 1 ~~~~~~~~~~~~~~~~~p~~~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~ 80 (424)
|.++..+|+++++++ .+.-|...++||-++-|+.- +-....+.+..++.+||++|.+- -.+|
T Consensus 1 m~~~~~~~l~~l~~~-~~~~a~~g~F~Qp~n~d~~~----~~~qWq~~~~~~~~~G~~tLivQ-------Wt~y------ 62 (296)
T PRK09936 1 MRKFIFVLLTLLLVS-PFSQAMKGIFYQPQNRDSQV----TDTQWQGLWSQLRLQGFDTLVVQ-------WTRY------ 62 (296)
T ss_pred ChhHHHHHHHHHHcC-chhhccccceeccccccCCC----CHHHHHHHHHHHHHcCCcEEEEE-------eeec------
Confidence 444444444444332 22678889999988766433 46778888999999999999874 1122
Q ss_pred CCCCCCCCCH-HHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccC---CCccCCC
Q 014447 81 DLDASKYGSQ-ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRG---DKEYSDG 156 (424)
Q Consensus 81 ~id~~~~Gt~-edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~ 156 (424)
-| +.||+. --|.+.+++|++.||+|++=+.++-- |+.--.........|.+..-..+ ...|+..
T Consensus 63 -G~-~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~----------y~q~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~ 130 (296)
T PRK09936 63 -GD-ADFGGQRGWLAKRLAAAQQAGLKLVVGLYADPE----------FFMHQKQDGAALESYLNRQLGASLQQARLWSAA 130 (296)
T ss_pred -cC-CCcccchHHHHHHHHHHHHcCCEEEEcccCChH----------HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 23 456654 45899999999999999998877532 11000000000000100000000 0011112
Q ss_pred CCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhcCCC----eEEecccCCCCHHHHHHHHHhcCC
Q 014447 157 QGNDDTGEDFQPAPD-IDHLNPRVQKELSDWMNWLKTEIGFD----GWRFDFVKGYAPSITKVYMENTSP 221 (424)
Q Consensus 157 ~~~~~~~~~~~~~~d-ln~~np~v~~~l~~~~~~w~~~~gvD----GfR~D~a~~~~~~~~~~~~~~~~p 221 (424)
.+....++..+...| .+|..++-|+.+...++..+....+- .+-.=....+.++.+..+++...+
T Consensus 131 ~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~~~~kPv~ISay~~g~~sP~~l~~Wl~~l~~ 200 (296)
T PRK09936 131 WGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLIDVSAKPVHISAFFAGNMSPDGYRQWLEQLKA 200 (296)
T ss_pred cCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCCCCCCCeEEEeecccCCChHHHHHHHHHHhh
Confidence 222223444555555 78888888888888887776522200 222212244566666666665544
|
|
| >PF13200 DUF4015: Putative glycosyl hydrolase domain | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.003 Score=60.39 Aligned_cols=133 Identities=18% Similarity=0.288 Sum_probs=83.1
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCC----CHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG----SQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G----t~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
|+=..+.+.|+.+++-|+|+|.|- -...+|.=..+.........| ...|+++|+++||++||.+|.=+|.=
T Consensus 10 ~~~~~~~~~~~~i~~t~lNavVID----vKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~F- 84 (316)
T PF13200_consen 10 GSPERLDKLLDLIKRTELNAVVID----VKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVF- 84 (316)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEE----EecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEe-
Confidence 444557777899999999999874 112333111111000001122 24689999999999999999998872
Q ss_pred CCCCCCCCCcceeecCCCC-CCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 014447 116 RTAERKDGRGIYCIFEGGT-SDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 194 (424)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~ 194 (424)
.+.. ...+++|.- ...++..|.+..+ ..=+|--+++||+|.+++.+...+ .
T Consensus 85 ---------------kD~~la~~~pe~av--~~~~G~~w~d~~~----------~~WvnP~~~evw~Y~i~IA~Eaa~-~ 136 (316)
T PF13200_consen 85 ---------------KDPVLAEAHPEWAV--KTKDGSVWRDNEG----------EAWVNPYSKEVWDYNIDIAKEAAK-L 136 (316)
T ss_pred ---------------cChHHhhhChhhEE--ECCCCCcccCCCC----------CccCCCCCHHHHHHHHHHHHHHHH-c
Confidence 2100 001223321 1222333433322 223888999999999999999998 9
Q ss_pred CCCeEEecccC
Q 014447 195 GFDGWRFDFVK 205 (424)
Q Consensus 195 gvDGfR~D~a~ 205 (424)
|+|.+-+|=+.
T Consensus 137 GFdEIqfDYIR 147 (316)
T PF13200_consen 137 GFDEIQFDYIR 147 (316)
T ss_pred CCCEEEeeeee
Confidence 99999999764
|
|
| >cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0018 Score=63.23 Aligned_cols=149 Identities=15% Similarity=0.191 Sum_probs=79.1
Q ss_pred cHHHHHhhhhHHHHcCC--CEEEeCCCCCCCC-----CCCCC------ccccc--CCCC-CCCCCHHHHHHHHHHHHHcC
Q 014447 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVA-----PQGYM------PGRLY--DLDA-SKYGSQADLKSLIQAFRQKG 104 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~-----~~gY~------~~d~~--~id~-~~~Gt~edl~~Lv~~aH~~G 104 (424)
+-..+.+-++.+++.|| ++|+|=+-+.... +..|. ...+. ..++ .+|- +.++||+++|++|
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FP---dp~~mi~~Lh~~G 98 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWP---NPKGMIDELHEQG 98 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCC---CHHHHHHHHHHCC
Confidence 46778888888988775 7888864221100 11121 11111 1110 1222 6899999999999
Q ss_pred CEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCC-CCCCCC-CCCCCCCCCCHHHHHH
Q 014447 105 IKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGND-DTGEDF-QPAPDIDHLNPRVQKE 182 (424)
Q Consensus 105 i~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~dln~~np~v~~~ 182 (424)
+||++=+.+ ++..+.......+..+..+.. .++ + .. +..+.. .....| ....-+|+.||++++.
T Consensus 99 ~kv~l~v~P-~i~~~~~~~~~~~~~~~~~~~---~g~---~-vk------~~~G~~~~~~~~W~g~~~~~Dftnp~a~~W 164 (340)
T cd06597 99 VKVLLWQIP-IIKLRPHPHGQADNDEDYAVA---QNY---L-VQ------RGVGKPYRIPGQWFPDSLMLDFTNPEAAQW 164 (340)
T ss_pred CEEEEEecC-ccccccccccccchhHHHHHH---CCE---E-EE------cCCCCccccccccCCCceeecCCCHHHHHH
Confidence 999986555 222111000000000000000 000 0 00 000000 000011 1223489999999999
Q ss_pred HHHHHHHHHHhcCCCeEEecccCC
Q 014447 183 LSDWMNWLKTEIGFDGWRFDFVKG 206 (424)
Q Consensus 183 l~~~~~~w~~~~gvDGfR~D~a~~ 206 (424)
..+.++.++++.|||||-+|+...
T Consensus 165 w~~~~~~~~~~~Gidg~w~D~~E~ 188 (340)
T cd06597 165 WMEKRRYLVDELGIDGFKTDGGEH 188 (340)
T ss_pred HHHHHHHHHHhcCCcEEEecCCCc
Confidence 999999999779999999998754
|
CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0054 Score=63.12 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=78.9
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCC---CC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQ---SV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~---~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
+.....+.|+.|++.-||+|+.==.+- .| ...+--...+.++- .+-=+.+-.|.+|++||+.||+.|.=.-+.-
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~-~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiya 194 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWA-NRQISTSTVKDYINAAHKYGMKAMAYNMIYA 194 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT---EEEHHHHHHHHHHHHHTT-EEEEEEESSE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhc-CCEehHHHHHHHHHHHHHcCcceehhHhhhc
Confidence 567788899999999999999732211 00 00000011233333 3333478899999999999999998765554
Q ss_pred CCCCCC--CCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHH
Q 014447 116 RTAERK--DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKT 192 (424)
Q Consensus 116 ~~~~~~--~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~np~v~~~l~~~~~~w~~ 192 (424)
...+.. +....|..|.+.... .++.... .+ .|+. +-=.|..|+.=|++|.+.+...++
T Consensus 195 a~~~~~~~gv~~eW~ly~d~~~~---~~~~~~l-~~---------------~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~ 255 (559)
T PF13199_consen 195 ANNNYEEDGVSPEWGLYKDDSHS---NQDTYDL-PD---------------GWPSDLYLMDPGNPEWQNYIINQMNKAIQ 255 (559)
T ss_dssp EETT--S--SS-GGBEEESSSBT---SB-EEEE-TT----------------E--EEEEB-TT-HHHHHHHHHHHHHHHH
T ss_pred cccCcccccCCchhhhhhccCCC---ccceeec-Cc---------------ccccceEEecCCCHHHHHHHHHHHHHHHH
Confidence 433321 133446666542211 1110000 00 0000 222789999999999999999999
Q ss_pred hcCCCeEEecccC
Q 014447 193 EIGFDGWRFDFVK 205 (424)
Q Consensus 193 ~~gvDGfR~D~a~ 205 (424)
.+|+|||-+|...
T Consensus 256 ~~gFDG~hlDq~G 268 (559)
T PF13199_consen 256 NFGFDGWHLDQLG 268 (559)
T ss_dssp HHT--EEEEE-S-
T ss_pred ccCCceEeeeccC
Confidence 9999999999874
|
|
| >PF14488 DUF4434: Domain of unknown function (DUF4434) | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0058 Score=53.09 Aligned_cols=88 Identities=13% Similarity=0.209 Sum_probs=61.1
Q ss_pred ceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHc
Q 014447 24 ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQK 103 (424)
Q Consensus 24 ~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~ 103 (424)
++++|...||.. . -=+-....+.+.++|++||++|.|. ..+-...-+.+..++.-. -..+..+-+..+.++|.+.
T Consensus 3 GtF~q~~~~d~~-~-~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~-~~~~~~d~l~~~L~~A~~~ 77 (166)
T PF14488_consen 3 GTFLQPWSWDIH-Q-NWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGG-FYMPPVDLLEMILDAADKY 77 (166)
T ss_pred eEEEccccchhh-c-CCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCcc-ccCCcccHHHHHHHHHHHc
Confidence 567787777651 1 1235788899999999999999987 222122223344442222 3345678899999999999
Q ss_pred CCEEEEeeecccC
Q 014447 104 GIKCLADMVINHR 116 (424)
Q Consensus 104 Gi~VilD~v~NH~ 116 (424)
||+|++-+-++..
T Consensus 78 Gmkv~~Gl~~~~~ 90 (166)
T PF14488_consen 78 GMKVFVGLYFDPD 90 (166)
T ss_pred CCEEEEeCCCCch
Confidence 9999999988743
|
|
| >PRK10426 alpha-glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.016 Score=61.30 Aligned_cols=152 Identities=18% Similarity=0.316 Sum_probs=85.9
Q ss_pred cCCCCCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcC--CCEEEeCCCCCCCC--CCCCCcc-cccCCCCCCCCCHH
Q 014447 17 FLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAG--ITHVWLPPPSQSVA--PQGYMPG-RLYDLDASKYGSQA 91 (424)
Q Consensus 17 ~p~~~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lG--v~~I~l~Pi~~~~~--~~gY~~~-d~~~id~~~~Gt~e 91 (424)
.|.|+-+..++. +. +.-+.+.+.++.+++.| +++|||- -+.... +.|...- + +..|+.+|-
T Consensus 204 ~P~Wal~G~~~g-~~--------~~~~~v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~-~~~d~~~FP--- 269 (635)
T PRK10426 204 LPDWAYDGVTLG-IQ--------GGTEVVQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWN-WKWDSERYP--- 269 (635)
T ss_pred CChhhccCcccc-cc--------CCHHHHHHHHHHHHHcCCCeeEEEEe-ccccccccccccccccc-ceEChhhCC---
Confidence 477776455432 22 22356788888888877 6889884 222111 1121111 1 234523444
Q ss_pred HHHHHHHHHHHcCCEEEEeeecccCCCCCCC----CCcceeec-CCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC
Q 014447 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKD----GRGIYCIF-EGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF 166 (424)
Q Consensus 92 dl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~----~~~~~~~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (424)
+.++||+++|++|+||++=+-+. +..+++. ....|..- .++. .|.. ..+...
T Consensus 270 dp~~mi~~L~~~G~k~v~~i~P~-v~~~~~~y~e~~~~gy~vk~~~g~-----------------~~~~-----~~~~~~ 326 (635)
T PRK10426 270 QLDSRIKQLNEEGIQFLGYINPY-LASDGDLCEEAAEKGYLAKDADGG-----------------DYLV-----EFGEFY 326 (635)
T ss_pred CHHHHHHHHHHCCCEEEEEEcCc-cCCCCHHHHHHHHCCcEEECCCCC-----------------EEEe-----EecCCC
Confidence 57889999999999999987763 3333220 00111110 0000 0000 000011
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH-HHHhcCCCeEEecccCCCC
Q 014447 167 QPAPDIDHLNPRVQKELSDWMNW-LKTEIGFDGWRFDFVKGYA 208 (424)
Q Consensus 167 ~~~~dln~~np~v~~~l~~~~~~-w~~~~gvDGfR~D~a~~~~ 208 (424)
..-+|+.||++++...+.++. +++ .|||||=+|.-..+|
T Consensus 327 --~~~~Dftnp~ar~Ww~~~~~~~~~~-~Gvdg~w~D~~E~~p 366 (635)
T PRK10426 327 --AGVVDLTNPEAYEWFKEVIKKNMIG-LGCSGWMADFGEYLP 366 (635)
T ss_pred --ceeecCCCHHHHHHHHHHHHHHHhh-cCCCEEeeeCCCCCC
Confidence 113788999999999998864 555 999999999866543
|
|
| >cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0058 Score=59.06 Aligned_cols=138 Identities=17% Similarity=0.249 Sum_probs=82.4
Q ss_pred cHHHHHhhhhHHHHcCC--CEEEeCCCCCC--CCCCCCC-cccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQS--VAPQGYM-PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv--~~I~l~Pi~~~--~~~~gY~-~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
+-+.+.+-++.+++.|| ++|||- .... ..+.|+. ..+ +..|+.+|- +.++||+++|++|+||++-+.+ +
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i~P-~ 94 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTYINP-Y 94 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEEecC-c
Confidence 57788888998888765 678875 3311 1122332 112 355633564 5889999999999999996665 4
Q ss_pred CCCCCCCC-----CcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHH
Q 014447 116 RTAERKDG-----RGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNW 189 (424)
Q Consensus 116 ~~~~~~~~-----~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~np~v~~~l~~~~~~ 189 (424)
+..+++.. ...+..-.. ++..+. ...+ ....-+|+.||++++...+.++.
T Consensus 95 v~~~~~~~y~~~~~~g~~vk~~----------------~g~~~~--------~~~w~g~~~~~Dftnp~a~~ww~~~~~~ 150 (317)
T cd06594 95 LADDGPLYYEEAKDAGYLVKDA----------------DGSPYL--------VDFGEFDCGVLDLTNPAARDWFKQVIKE 150 (317)
T ss_pred eecCCchhHHHHHHCCeEEECC----------------CCCeee--------eccCCCCceeeecCCHHHHHHHHHHHHH
Confidence 44332210 001111000 000000 0001 11234899999999999999987
Q ss_pred HHHhcCCCeEEecccCCCC
Q 014447 190 LKTEIGFDGWRFDFVKGYA 208 (424)
Q Consensus 190 w~~~~gvDGfR~D~a~~~~ 208 (424)
...+.|||||=+|+-..++
T Consensus 151 ~~~~~Gvdg~w~D~~E~~p 169 (317)
T cd06594 151 MLLDLGLSGWMADFGEYLP 169 (317)
T ss_pred HhhhcCCcEEEecCCCCCC
Confidence 7455999999999875443
|
Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. |
| >cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37 | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.017 Score=55.84 Aligned_cols=133 Identities=15% Similarity=0.191 Sum_probs=76.6
Q ss_pred HHHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCC
Q 014447 43 NSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~ 120 (424)
+.+.+-++.+++.|| ++|+|-+=+... .+-.-.+ +..|+.+|- +.++||+++|++|+||++-+.+- ++.++
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~--~~~~~~~-f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P~-i~~~~ 101 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSI--EGGKRYV-FNWNKDRFP---DPAAFVAKFHERGIRLAPNIKPG-LLQDH 101 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEecccccc--CCCceee-eecCcccCC---CHHHHHHHHHHCCCEEEEEeCCc-ccCCC
Confidence 567777888888775 778875322111 0100111 344524555 57899999999999999976653 43333
Q ss_pred CC----CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 014447 121 KD----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKTEIG 195 (424)
Q Consensus 121 ~~----~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~np~v~~~l~~~~~~w~~~~g 195 (424)
+. ....|+.-.. ++. .+..+..+++ ..-+|+.||++++...+.++..+.+.|
T Consensus 102 ~~y~e~~~~g~~v~~~----------------------~g~-~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G 158 (317)
T cd06599 102 PRYKELKEAGAFIKPP----------------------DGR-EPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLG 158 (317)
T ss_pred HHHHHHHHCCcEEEcC----------------------CCC-CcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCC
Confidence 21 0111111100 000 0000111111 123889999999999999954444499
Q ss_pred CCeEEecccC
Q 014447 196 FDGWRFDFVK 205 (424)
Q Consensus 196 vDGfR~D~a~ 205 (424)
||||=+|...
T Consensus 159 vdg~w~D~~E 168 (317)
T cd06599 159 IDSTWNDNNE 168 (317)
T ss_pred CcEEEecCCC
Confidence 9999999864
|
The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.016 Score=56.05 Aligned_cols=132 Identities=14% Similarity=0.183 Sum_probs=76.3
Q ss_pred cHHHHHhhhhHHHHc--CCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNA--GITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~l--Gv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-..+.+.++.+++. -+++|+|=--+- ...++ . -+..|+.+|- +.++||+++|++|+||++-+.+ +++.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~--~~~~~--~-~f~~d~~~FP---dp~~mi~~L~~~G~kv~~~i~P-~v~~ 92 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYW--PKQGW--G-EWKFDPERFP---DPKAMVRELHEMNAELMISIWP-TFGP 92 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhh--cCCCc--e-eEEEChhhCC---CHHHHHHHHHHCCCEEEEEecC-CcCC
Confidence 566788888888775 567777641110 11121 1 2345534565 4679999999999999996654 3543
Q ss_pred CCCC----CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHh
Q 014447 119 ERKD----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKTE 193 (424)
Q Consensus 119 ~~~~----~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~np~v~~~l~~~~~~w~~~ 193 (424)
+++. .+..|+.-.. . +. .+. ..+++ ..-+|+.||++++...+.++..+.+
T Consensus 93 ~~~~y~e~~~~g~~v~~~----------------~------g~-~~~--~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~ 147 (319)
T cd06591 93 ETENYKEMDEKGYLIKTD----------------R------GP-RVT--MQFGGNTRFYDATNPEAREYYWKQLKKNYYD 147 (319)
T ss_pred CChhHHHHHHCCEEEEcC----------------C------CC-eee--eeCCCCccccCCCCHHHHHHHHHHHHHHhhc
Confidence 3321 0111211110 0 00 000 01111 2348999999999988877643334
Q ss_pred cCCCeEEecccCC
Q 014447 194 IGFDGWRFDFVKG 206 (424)
Q Consensus 194 ~gvDGfR~D~a~~ 206 (424)
.|||||=+|....
T Consensus 148 ~Gvdg~w~D~~Ep 160 (319)
T cd06591 148 KGVDAWWLDAAEP 160 (319)
T ss_pred CCCcEEEecCCCC
Confidence 9999999999753
|
XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes. |
| >PRK14582 pgaB outer membrane N-deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.057 Score=56.98 Aligned_cols=130 Identities=16% Similarity=0.150 Sum_probs=74.6
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCC----CCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ----GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~----gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
-+.|.+.|+.||++|+|+|+|--+....++. -|-|.++...-.+-|. -+.-. .+|++|++|..=+.+=-.+
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~---~~aw~--l~~r~~v~v~AWmp~~~~~ 407 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFN---RVAWQ--LRTRAGVNVYAWMPVLSFD 407 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcC---HHHHH--HHHhhCCEEEEeccceeec
Confidence 5678888999999999999998765432221 2333322211112222 12222 2899999998766554332
Q ss_pred CCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 014447 118 AERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (424)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvD 197 (424)
...............+.....++| ...|+-.+|+||+.|.+++.-++..+.||
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~rl~P~~pe~r~~i~~i~~dla~~~~~d 460 (671)
T PRK14582 408 LDPTLPRVKRLDTGEGKAQIHPEQ---------------------------YRRLSPFDDRVRAQVGMLYEDLAGHAAFD 460 (671)
T ss_pred cCCCcchhhhccccCCccccCCCC---------------------------CcCCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 211000000000000000000000 11288999999999999999999978999
Q ss_pred eEEecc
Q 014447 198 GWRFDF 203 (424)
Q Consensus 198 GfR~D~ 203 (424)
|+-+|-
T Consensus 461 Gilf~D 466 (671)
T PRK14582 461 GILFHD 466 (671)
T ss_pred eEEecc
Confidence 999985
|
|
| >cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.023 Score=54.89 Aligned_cols=137 Identities=17% Similarity=0.240 Sum_probs=79.2
Q ss_pred cHHHHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-+.+.+-++.+++.|| +.|||-.=+ ..+|.. +..|+.+|- +.++||+++|++|+||++=+.+. .+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~----~~~~~~---f~~d~~~FP---dp~~~i~~l~~~g~k~~~~~~P~-i~~ 90 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLDIHY----MDSYRL---FTWDPYRFP---EPKKLIDELHKRNVKLVTIVDPG-IRV 90 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEChhh----hCCCCc---eeechhcCC---CHHHHHHHHHHCCCEEEEEeecc-ccC
Confidence 46677788888877664 677765311 123322 344523554 57899999999999999976653 433
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 014447 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (424)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~np~v~~~l~~~~~~w~~~~gvD 197 (424)
+.. +..|..+.. ..+ + +.. ..+....+..|++ ..-+|+.||++++...+.++..+.+.|||
T Consensus 91 ~~~-----~~~~~~~~~---~~~---~-v~~------~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvd 152 (317)
T cd06600 91 DQN-----YSPFLSGMD---KGK---F-CEI------ESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVD 152 (317)
T ss_pred CCC-----ChHHHHHHH---CCE---E-EEC------CCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCc
Confidence 221 111111000 000 0 000 0000000111111 12379999999999999999888669999
Q ss_pred eEEecccCC
Q 014447 198 GWRFDFVKG 206 (424)
Q Consensus 198 GfR~D~a~~ 206 (424)
||=+|....
T Consensus 153 g~w~D~~Ep 161 (317)
T cd06600 153 GIWLDMNEP 161 (317)
T ss_pred eEEeeCCCC
Confidence 999998764
|
MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do |
| >PRK10658 putative alpha-glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.021 Score=60.60 Aligned_cols=131 Identities=13% Similarity=0.169 Sum_probs=73.8
Q ss_pred HHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCC
Q 014447 44 SLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK 121 (424)
Q Consensus 44 gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~ 121 (424)
.+.+-++.+++.|| ++|++-..+. .+|.-.+ +..|+.+|- +.+.||+++|++|+||++=+.+ +.+.+++
T Consensus 284 ~v~~~~~~~r~~~iP~d~i~lD~~w~----~~~~~~~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~i~P-~i~~~s~ 354 (665)
T PRK10658 284 TVNSFIDGMAERDLPLHVFHFDCFWM----KEFQWCD-FEWDPRTFP---DPEGMLKRLKAKGLKICVWINP-YIAQKSP 354 (665)
T ss_pred HHHHHHHHHHHcCCCceEEEEchhhh----cCCceee-eEEChhhCC---CHHHHHHHHHHCCCEEEEeccC-CcCCCch
Confidence 45555566666554 4455433221 1222122 234423343 4678999999999999997766 3443332
Q ss_pred C----CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 014447 122 D----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLKTEIGF 196 (424)
Q Consensus 122 ~----~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~np~v~~~l~~~~~~w~~~~gv 196 (424)
. ....|+.-.. ++..|. +..| ....-+|+.||++|+...+.++.+++ .||
T Consensus 355 ~f~e~~~~gy~vk~~----------------~G~~~~--------~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~Gv 409 (665)
T PRK10658 355 LFKEGKEKGYLLKRP----------------DGSVWQ--------WDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MGV 409 (665)
T ss_pred HHHHHHHCCeEEECC----------------CCCEee--------eeecCCCceeecCCCHHHHHHHHHHHHHHHh-cCC
Confidence 1 0111211000 000000 0001 12223889999999999999999988 999
Q ss_pred CeEEecccCCCC
Q 014447 197 DGWRFDFVKGYA 208 (424)
Q Consensus 197 DGfR~D~a~~~~ 208 (424)
|||-.|....+|
T Consensus 410 dgfw~D~gE~~p 421 (665)
T PRK10658 410 DCFKTDFGERIP 421 (665)
T ss_pred cEEEecCCceee
Confidence 999999765444
|
|
| >cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.025 Score=54.76 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=78.2
Q ss_pred cHHHHHhhhhHHHHcC--CCEEEeCCCCCCC-C-CCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSV-A-PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lG--v~~I~l~Pi~~~~-~-~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+-..+.+.++.+++.| ++.|+|-.=+-.. . ...|. + +..|+.+|- +.++||+++|++|+||++=+.+ ++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~v~P-~v 94 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFP---DPAGMIADLAKKGVKTIVITEP-FV 94 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCC---CHHHHHHHHHHcCCcEEEEEcC-cc
Confidence 3567788888888766 4677775422110 0 11122 2 344535675 4578999999999999998865 34
Q ss_pred CCCCCCC----CcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHH
Q 014447 117 TAERKDG----RGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLK 191 (424)
Q Consensus 117 ~~~~~~~----~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~np~v~~~l~~~~~~w~ 191 (424)
+.+++.. ...+..... .+...+ ....| ....-+|+.||++++...+.++.+.
T Consensus 95 ~~~~~~y~e~~~~g~l~~~~---------------~~~~~~--------~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 151 (317)
T cd06598 95 LKNSKNWGEAVKAGALLKKD---------------QGGVPT--------LFDFWFGNTGLIDWFDPAAQAWFHDNYKKLI 151 (317)
T ss_pred cCCchhHHHHHhCCCEEEEC---------------CCCCEe--------eeeccCCCccccCCCCHHHHHHHHHHHHHhh
Confidence 4333210 011100000 000000 00000 0112367899999999999999887
Q ss_pred HhcCCCeEEecccC
Q 014447 192 TEIGFDGWRFDFVK 205 (424)
Q Consensus 192 ~~~gvDGfR~D~a~ 205 (424)
+ .|||||=+|...
T Consensus 152 ~-~Gvdg~w~D~~E 164 (317)
T cd06598 152 D-QGVTGWWGDLGE 164 (317)
T ss_pred h-CCccEEEecCCC
Confidence 6 999999999875
|
CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >PRK11052 malQ 4-alpha-glucanotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.082 Score=56.27 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=39.4
Q ss_pred ceEEEeecCCCCCC-CCCcHHHHHhhhhHHHHcCCCEEEeCCCCC
Q 014447 24 ALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPSQ 67 (424)
Q Consensus 24 ~v~~~~f~~ds~~~-~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~ 67 (424)
+++.|+|...|..+ |+|||.++.+-++.+++.|.+.+.|+|++.
T Consensus 145 Gv~~qlySLrs~~~~GIGDfgdl~~l~d~~a~~G~~~~qlnPlha 189 (695)
T PRK11052 145 GACVQLYTLRSEHNWGIGDFGDLKQMLEDVAKRGGDFIGLNPIHA 189 (695)
T ss_pred EEEeccccCCCCCCCCeecHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 69999998888655 579999999999999999999999999993
|
|
| >cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.052 Score=52.99 Aligned_cols=141 Identities=19% Similarity=0.305 Sum_probs=78.4
Q ss_pred cHHHHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHH--HHHHHHHHHcCCEEEEeeecccC
Q 014447 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADL--KSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl--~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+-+.+.+.++.+++.|| +.|||-.=+. .++. + +..|+.+|- +. ++||+++|++|+||++=+.+. +
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~----~~~~--~-f~~d~~~FP---dp~~~~mi~~L~~~G~k~~~~i~P~-v 90 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYM----DRRR--D-FTLDPVRFP---GLKMPEFVDELHANGQHYVPILDPA-I 90 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECcccc----cCcc--c-eecccccCC---CccHHHHHHHHHHCCCEEEEEEeCc-c
Confidence 35678888888887664 6777643221 1121 1 334422343 34 899999999999999976653 3
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 014447 117 TAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKTEIG 195 (424)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~np~v~~~l~~~~~~w~~~~g 195 (424)
..+.. ...+..|..+..... + +.+ ..+....+..|++ ..-+|+.||++++...+.++.++++.|
T Consensus 91 ~~~~~--~~~~~~~~e~~~~g~------~-v~~------~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G 155 (339)
T cd06602 91 SANEP--TGSYPPYDRGLEMDV------F-IKN------DDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVP 155 (339)
T ss_pred ccCcC--CCCCHHHHHHHHCCe------E-EEC------CCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 33210 011111211100000 0 000 0000000011111 122689999999999999998887799
Q ss_pred CCeEEecccCCC
Q 014447 196 FDGWRFDFVKGY 207 (424)
Q Consensus 196 vDGfR~D~a~~~ 207 (424)
||||=+|.....
T Consensus 156 vdg~w~D~~Ep~ 167 (339)
T cd06602 156 FDGLWIDMNEPS 167 (339)
T ss_pred CcEEEecCCCCc
Confidence 999999987643
|
MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of |
| >PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.022 Score=55.66 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=41.4
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
++....+.|.-.++.|++.|+.+= + .+....=...+.|++|++.||+.||+||+|+-+.
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL-~--------------ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSL-H--------------IPEDDPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE------------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CHHHHHHHHHHHHHCCCCEEECCC-C--------------cCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 677888888888999999999761 1 1110111236889999999999999999999775
|
The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A. |
| >PLN03236 4-alpha-glucanotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.033 Score=59.17 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=64.3
Q ss_pred CCCCCCceEEEeecCCCCCC-CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC------CCCCCcccccCCCCCCCCCH
Q 014447 18 LPFTSPALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA------PQGYMPGRLYDLDASKYGSQ 90 (424)
Q Consensus 18 p~~~~~~v~~~~f~~ds~~~-~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~------~~gY~~~d~~~id~~~~Gt~ 90 (424)
+.|-+.+|..|+|...|..+ |+|||.++.+-++.+++.|.+.|+|+|+..... +..|++.+-+.+| |-|=+.
T Consensus 57 ~~~R~aGill~l~SLrS~~s~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlN-PlyIdl 135 (745)
T PLN03236 57 GAWKGSGMALPVFSLRSAESVGAGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALH-PLYLKL 135 (745)
T ss_pred cchhhheeeeccccCCCCCCCCcccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccC-hHHcCH
Confidence 56778899999999888765 469999999999999999999999999988641 2479999999999 888777
Q ss_pred HHHH
Q 014447 91 ADLK 94 (424)
Q Consensus 91 edl~ 94 (424)
+.+.
T Consensus 136 e~L~ 139 (745)
T PLN03236 136 KELV 139 (745)
T ss_pred HHhh
Confidence 6663
|
|
| >cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.057 Score=52.77 Aligned_cols=135 Identities=19% Similarity=0.334 Sum_probs=77.9
Q ss_pred cHHHHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-+.+.+.++.+++.|| ++|||-+-+.. +|.. +..|+.+|- +.++|++++|++|+||++=+.+ ++..
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~---f~~d~~~fP---dp~~m~~~l~~~g~~~~~~~~P-~v~~ 90 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRV---FTWDKERFP---DPKELIKELHEQGFKVVTIIDP-GVKV 90 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCc---eeeccccCC---CHHHHHHHHHHCCCEEEEEEeC-ceeC
Confidence 45677888888888775 67777543322 3322 345523564 4689999999999999987655 3322
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 014447 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (424)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~np~v~~~l~~~~~~w~~~~gvD 197 (424)
+.. +..|..+.. .++ +. .+ ..+....+..|++ ..-+|+.||++++...+.++.+.+ .|||
T Consensus 91 ~~~-----~~~~~e~~~---~g~---~v-~~------~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~-~Gvd 151 (339)
T cd06604 91 DPG-----YDVYEEGLE---NDY---FV-KD------PDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVD-LGVD 151 (339)
T ss_pred CCC-----ChHHHHHHH---CCe---EE-EC------CCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhh-CCCc
Confidence 211 111111000 000 00 00 0000000011111 112789999999999999998886 9999
Q ss_pred eEEecccC
Q 014447 198 GWRFDFVK 205 (424)
Q Consensus 198 GfR~D~a~ 205 (424)
||=+|...
T Consensus 152 g~w~D~~E 159 (339)
T cd06604 152 GIWNDMNE 159 (339)
T ss_pred eEeecCCC
Confidence 99999864
|
Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source. |
| >PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.031 Score=52.64 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=49.7
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC--CCCCCcccccCCCCCCCCCHHHHHHHHHH
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~~Gt~edl~~Lv~~ 99 (424)
+++|-.+.|+.. +. .+. -..+-++.+|++|+++|-|.-..+... ..++ .++ + ...+.|+++|++
T Consensus 5 G~~v~~~G~n~~-w~---~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~------~~~-~--~~~~~ld~~v~~ 70 (281)
T PF00150_consen 5 GKPVNWRGFNTH-WY---NPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY------NYD-E--TYLARLDRIVDA 70 (281)
T ss_dssp SEBEEEEEEEET-TS---GGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT------SBT-H--HHHHHHHHHHHH
T ss_pred CCeEEeeeeecc-cC---CCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc------ccc-H--HHHHHHHHHHHH
Confidence 345556666522 11 112 566678999999999999965432110 1111 112 1 136789999999
Q ss_pred HHHcCCEEEEeeecc
Q 014447 100 FRQKGIKCLADMVIN 114 (424)
Q Consensus 100 aH~~Gi~VilD~v~N 114 (424)
|+++||+||+|+--.
T Consensus 71 a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 71 AQAYGIYVILDLHNA 85 (281)
T ss_dssp HHHTT-EEEEEEEES
T ss_pred HHhCCCeEEEEeccC
Confidence 999999999988654
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A .... |
| >COG3589 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.073 Score=50.45 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=45.7
Q ss_pred EEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 014447 27 FQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIK 106 (424)
Q Consensus 27 ~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~ 106 (424)
+.+|+|. +.....++-|+...+.||+-|..+=...... +=+-.+-|++|++.||+.||+
T Consensus 6 fSifp~~------~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~---------------~~~~~~~~~ell~~Anklg~~ 64 (360)
T COG3589 6 FSIFPNR------SPKEKDIAYIDRMHKYGFKRIFTSLLIPEED---------------AELYFHRFKELLKEANKLGLR 64 (360)
T ss_pred EEeccCC------CcchhHHHHHHHHHHcCccceeeecccCCch---------------HHHHHHHHHHHHHHHHhcCcE
Confidence 3456654 3455666777777889999988653221110 012245799999999999999
Q ss_pred EEEeeecc
Q 014447 107 CLADMVIN 114 (424)
Q Consensus 107 VilD~v~N 114 (424)
||+|+-+.
T Consensus 65 vivDvnPs 72 (360)
T COG3589 65 VIVDVNPS 72 (360)
T ss_pred EEEEcCHH
Confidence 99999875
|
|
| >COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.088 Score=56.72 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHcCCEEEEeeecccCCCCCCC-----CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC
Q 014447 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKD-----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF 166 (424)
Q Consensus 92 dl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~-----~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (424)
+.++|++.+|++|||+|+=+.|. ...+++. ..+-+..-+ .+......+|
T Consensus 322 ~pk~mi~~l~~~Gikl~~~i~P~-i~~d~~~~~e~~~~Gy~~k~~-------------------------~g~~~~~~~w 375 (772)
T COG1501 322 DPKQMIAELHEKGIKLIVIINPY-IKQDSPLFKEAIEKGYFVKDP-------------------------DGEIYQADFW 375 (772)
T ss_pred CHHHHHHHHHhcCceEEEEeccc-cccCCchHHHHHHCCeEEECC-------------------------CCCEeeeccc
Confidence 45599999999999999988874 4444421 011111111 1112222233
Q ss_pred C-CCCCCCCCCHHHHHHHHH-HHHHHHHhcCCCeEEecccCCCC
Q 014447 167 Q-PAPDIDHLNPRVQKELSD-WMNWLKTEIGFDGWRFDFVKGYA 208 (424)
Q Consensus 167 ~-~~~dln~~np~v~~~l~~-~~~~w~~~~gvDGfR~D~a~~~~ 208 (424)
+ ...=+|+.||++|+...+ ....+++ +|||||=.|+....+
T Consensus 376 ~~~~a~~DFtnp~~r~Ww~~~~~~~l~d-~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 376 PGNSAFPDFTNPDAREWWASDKKKNLLD-LGVDGFWNDMNEPEP 418 (772)
T ss_pred CCcccccCCCCHHHHHHHHHHHHhHHHh-cCccEEEccCCCCcc
Confidence 2 233488999999999995 5567887 999999999976553
|
|
| >PLN02950 4-alpha-glucanotransferase | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.065 Score=58.73 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=64.5
Q ss_pred CCCCCCceEEEeecCCCCCC-CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC------CCCCCcccccCCCCCCCCCH
Q 014447 18 LPFTSPALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA------PQGYMPGRLYDLDASKYGSQ 90 (424)
Q Consensus 18 p~~~~~~v~~~~f~~ds~~~-~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~------~~gY~~~d~~~id~~~~Gt~ 90 (424)
|.|-+.+|..|+|...|..+ |+|||.++.+-+|.+++.|.+.|+|+|+..... +..|++.+-+.+| |-|=+.
T Consensus 257 ~~~R~~Gi~~~l~SLrS~~s~GIGDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falN-PlyI~l 335 (909)
T PLN02950 257 MPWRGAGVAVPVFSIRSEEDVGVGEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALH-PLYLRV 335 (909)
T ss_pred CCccceEEEEecccCCCCCCCCeeCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccC-hhhcCH
Confidence 55667789999998887764 579999999999999999999999999988642 2379999999999 988887
Q ss_pred HHHHH
Q 014447 91 ADLKS 95 (424)
Q Consensus 91 edl~~ 95 (424)
+++-.
T Consensus 336 ~~l~~ 340 (909)
T PLN02950 336 QALSE 340 (909)
T ss_pred HHHHh
Confidence 76643
|
|
| >PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.04 Score=55.89 Aligned_cols=139 Identities=20% Similarity=0.382 Sum_probs=75.7
Q ss_pred cHHHHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-..+.+-++.+++.|| ++++|-.-+.. +|. + +..|+.+|- +.++|++.+|++|++|++-+.+ ++..
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~----~~~--~-f~~d~~~FP---d~~~~~~~l~~~G~~~~~~~~P-~v~~ 109 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD----GYG--D-FTWDPERFP---DPKQMIDELHDQGIKVVLWVHP-FVSN 109 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB----TTB--T-T-B-TTTTT---THHHHHHHHHHTT-EEEEEEES-EEET
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc----ccc--c-ccccccccc---chHHHHHhHhhCCcEEEEEeec-ccCC
Confidence 45677788888887665 55665433211 222 2 245523454 7899999999999999999888 3443
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 014447 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ-PAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (424)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~np~v~~~l~~~~~~w~~~~gvD 197 (424)
+++ .+..|..... .++. . . +..+....+..|+ ...-+|+.||++++...+.++.+++.+|||
T Consensus 110 ~~~----~~~~~~~~~~---~~~~---v-~------~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvd 172 (441)
T PF01055_consen 110 DSP----DYENYDEAKE---KGYL---V-K------NPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVD 172 (441)
T ss_dssp TTT----B-HHHHHHHH---TT-B---E-B------CTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-S
T ss_pred CCC----cchhhhhHhh---cCce---e-e------cccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCc
Confidence 332 0111111000 0000 0 0 0000000000011 122378999999999999999999867999
Q ss_pred eEEecccCCC
Q 014447 198 GWRFDFVKGY 207 (424)
Q Consensus 198 GfR~D~a~~~ 207 (424)
||-+|.....
T Consensus 173 g~w~D~~E~~ 182 (441)
T PF01055_consen 173 GWWLDFGEPS 182 (441)
T ss_dssp EEEEESTTTB
T ss_pred eEEeecCCcc
Confidence 9999995544
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A .... |
| >cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.15 Score=47.53 Aligned_cols=64 Identities=23% Similarity=0.279 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP 168 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (424)
++++.++.++.+|++|+||++=+--+|.+...
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~------------------------------------------------ 80 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF------------------------------------------------ 80 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc------------------------------------------------
Confidence 46889999999999999999987655442110
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014447 169 APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (424)
Q Consensus 169 ~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (424)
....+++-++.+.+.+..+++++|.||+=+|-
T Consensus 81 ---~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~ 112 (255)
T cd06542 81 ---ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDD 112 (255)
T ss_pred ---cccCCHHHHHHHHHHHHHHHHHhCCCceEEee
Confidence 01234556777777777777779999999985
|
The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B. |
| >KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.25 Score=52.42 Aligned_cols=135 Identities=19% Similarity=0.271 Sum_probs=83.3
Q ss_pred CcHHHHHhhhhHHHHcCCC--EEEeCCCCCCCCCCCCC--cccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 40 GWYNSLKNSIPDLSNAGIT--HVWLPPPSQSVAPQGYM--PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~--~I~l~Pi~~~~~~~gY~--~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
+.+..+++..++.+++||. .+| .+--|. -.||+ +|+..|++ ++.+++.+|++|+|+|+=+-++-
T Consensus 308 ~nls~~~dvv~~~~~agiPld~~~--------~DiDyMd~ykDFT-vd~~~fp~---~~~fv~~Lh~~G~kyvliidP~i 375 (805)
T KOG1065|consen 308 KNLSVVRDVVENYRAAGIPLDVIV--------IDIDYMDGYKDFT-VDKVWFPD---LKDFVDDLHARGFKYVLIIDPFI 375 (805)
T ss_pred ccHHHHHHHHHHHHHcCCCcceee--------eehhhhhccccee-eccccCcc---hHHHHHHHHhCCCeEEEEeCCcc
Confidence 5688888999999888884 433 222233 44544 45366776 99999999999999987665431
Q ss_pred CCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhc
Q 014447 116 RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKTEI 194 (424)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~np~v~~~l~~~~~~w~~~~ 194 (424)
. .+. .|.+|..+..... |.... ++... ..+..|++ ..=+|+.||++.....+.++.+-++.
T Consensus 376 s-~~~-----~y~~y~~g~~~~v--~I~~~---------~g~~~-~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~v 437 (805)
T KOG1065|consen 376 S-TNS-----SYGPYDRGVAKDV--LIKNR---------EGSPK-MLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEV 437 (805)
T ss_pred c-cCc-----cchhhhhhhhhce--eeecc---------cCchh-hhcccCCCcccccccCCchHHHHHHHHHHhhcccC
Confidence 1 111 1333333211100 10000 01000 22333333 22267899999999999999888899
Q ss_pred CCCeEEeccc
Q 014447 195 GFDGWRFDFV 204 (424)
Q Consensus 195 gvDGfR~D~a 204 (424)
++|||-+|+-
T Consensus 438 p~dg~wiDmn 447 (805)
T KOG1065|consen 438 PFDGFWIDMN 447 (805)
T ss_pred CccceEEECC
Confidence 9999999994
|
|
| >PRK11052 malQ 4-alpha-glucanotransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.12 Score=55.09 Aligned_cols=56 Identities=14% Similarity=0.222 Sum_probs=34.9
Q ss_pred CcHHHHHhhhhHHH--HcCCCEEE-eCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHH
Q 014447 40 GWYNSLKNSIPDLS--NAGITHVW-LPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLI 97 (424)
Q Consensus 40 G~~~gi~~~L~ylk--~lGv~~I~-l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv 97 (424)
|++..+++.+.... -.|++=|. +.|.... ....|++.+-+.+| |-|=+.+++-++.
T Consensus 165 gdl~~l~d~~a~~G~~~~qlnPlha~~p~~p~-~~SPYsp~Sr~alN-PlyI~~e~l~e~~ 223 (695)
T PRK11052 165 GDLKQMLEDVAKRGGDFIGLNPIHALYPANPE-SASPYSPSSRRWLN-VIYIDVNAVEDFQ 223 (695)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcCCCCCCC-CCCCcccccccccC-hHHcCHHHHhhhh
Confidence 45666666665332 24455555 3343222 45679999999999 8888877776654
|
|
| >cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.14 Score=48.89 Aligned_cols=129 Identities=13% Similarity=0.175 Sum_probs=72.6
Q ss_pred cHHHHHhhhhHHHHcC--CCEEEeCCCCCC-CC----CCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQS-VA----PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lG--v~~I~l~Pi~~~-~~----~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
+-..+.+-++.+++.| +++|+|=.=+.. .. ..+|. -++.|+.+|- |.++||+++|++|+|||+-+.+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~---~ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWT---GYSWNRKLFP---DPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcc---eeEEChhcCC---CHHHHHHHHHHCCCEEEEEeCC
Confidence 4677888888887755 466766221111 00 11222 2345534564 6789999999999999998877
Q ss_pred ccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHH
Q 014447 114 NHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKT 192 (424)
Q Consensus 114 NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~-~w~~ 192 (424)
.. +.+.. ...|..+..+. .- .... ....-+|+.||+.++...+.+. .+.+
T Consensus 97 ~~-~~~~~--~~~y~~~~~~~-----~~----------~~~~-----------~~~~~~D~tnp~a~~~w~~~~~~~~~~ 147 (292)
T cd06595 97 AD-GIRAH--EDQYPEMAKAL-----GV----------DPAT-----------EGPILFDLTNPKFMDAYFDNVHRPLEK 147 (292)
T ss_pred Cc-ccCCC--cHHHHHHHHhc-----CC----------Cccc-----------CCeEEecCCCHHHHHHHHHHHHHHHHh
Confidence 42 21110 00111111100 00 0000 0112378999998887666654 4555
Q ss_pred hcCCCeEEecccC
Q 014447 193 EIGFDGWRFDFVK 205 (424)
Q Consensus 193 ~~gvDGfR~D~a~ 205 (424)
.|||||=.|.-.
T Consensus 148 -~Gidg~W~D~~E 159 (292)
T cd06595 148 -QGVDFWWLDWQQ 159 (292)
T ss_pred -cCCcEEEecCCC
Confidence 999999999643
|
Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.22 Score=48.16 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=36.9
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
.+.++.||+.|+|+|-|=- +..|.. .-+-+.++..++.++|++.||+|+||+=+..+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv~P~~-------------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~ 83 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WVNPYD-------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDF 83 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--SS-TT-------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS
T ss_pred CCHHHHHHhcCCCeEEEEe-ccCCcc-------------cccCCHHHHHHHHHHHHHCCCeEEEeecccCC
Confidence 4678899999999998742 222222 12235789999999999999999999965443
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A .... |
| >cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.86 Score=43.72 Aligned_cols=114 Identities=12% Similarity=0.090 Sum_probs=69.8
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCC--CCCCCCHHHHHHHHHHHHHcCCEEEEeee-cccCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD--ASKYGSQADLKSLIQAFRQKGIKCLADMV-INHRT 117 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id--~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v-~NH~~ 117 (424)
+..-|.+-++.++.+|+|.++|==- +.|...++-.+. ...| |.+|++++++-|.++||.||-.+- +-|+.
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~------D~f~~~~~p~~~~~~~~y-T~~ei~ei~~yA~~~gI~vIPeid~pGH~~ 87 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYE------DTFPYEGEPEVGRMRGAY-TKEEIREIDDYAAELGIEVIPLIQTLGHLE 87 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEe------cceecCCCcccccCCCCc-CHHHHHHHHHHHHHcCCEEEecCCCHHHHH
Confidence 4677888999999999999998310 011111122222 0222 689999999999999999996542 45553
Q ss_pred CCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 014447 118 AERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIG 195 (424)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~g 195 (424)
.--+ +..+. ...+. . ..--.||..+|++.+.+.+.+...++-+.
T Consensus 88 ~~l~-----~~~~~--------------~l~~~-----~----------~~~~~l~~~~~~t~~fi~~li~ev~~~f~ 131 (301)
T cd06565 88 FILK-----HPEFR--------------HLREV-----D----------DPPQTLCPGEPKTYDFIEEMIRQVLELHP 131 (301)
T ss_pred HHHh-----Ccccc--------------ccccc-----C----------CCCCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 2100 00000 00000 0 00113899999999999999998887544
|
GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. |
| >PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.17 Score=50.16 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=67.6
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCC--HHHHHHHHHHHHHcCCEEEEeeecccCCCCC
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGS--QADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt--~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~ 120 (424)
..+.+-|.-+|++|||+|-|..+. ...+. |.=|. -+.|.++++.|+++||+|||-+.. +..
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~------------W~~lE-P~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~-~~~--- 72 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFS------------WSWLE-PEEGQYDFSWLDRVLDLAAKHGIKVILGTPT-AAP--- 72 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCE------------HHHH--SBTTB---HHHHHHHHHHHCTT-EEEEEECT-TTS---
T ss_pred HHHHHHHHHHHHcCCCEEEEEEec------------hhhcc-CCCCeeecHHHHHHHHHHHhccCeEEEEecc-ccc---
Confidence 456678899999999999987653 12222 22221 446889999999999999997762 221
Q ss_pred CCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc----CC
Q 014447 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI----GF 196 (424)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~----gv 196 (424)
..|.. ... ++... .+..+.. .........++.+|..|+++.+.++.+++.+ .|
T Consensus 73 ----P~Wl~--~~~----Pe~~~----------~~~~g~~---~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~v 129 (374)
T PF02449_consen 73 ----PAWLY--DKY----PEILP----------VDADGRR---RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAV 129 (374)
T ss_dssp -----HHHH--CCS----GCCC-----------B-TTTSB---EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTE
T ss_pred ----ccchh--hhc----ccccc----------cCCCCCc---CccCCccccchhHHHHHHHHHHHHHHHHhhccccceE
Confidence 11211 000 00000 0000000 0112223367789999998888876666544 46
Q ss_pred CeEEecccC
Q 014447 197 DGWRFDFVK 205 (424)
Q Consensus 197 DGfR~D~a~ 205 (424)
-|+-+|.=.
T Consensus 130 i~~~i~NE~ 138 (374)
T PF02449_consen 130 IGWQIDNEP 138 (374)
T ss_dssp EEEEECCST
T ss_pred EEEEecccc
Confidence 788888743
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A. |
| >cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.45 Score=46.26 Aligned_cols=110 Identities=15% Similarity=0.235 Sum_probs=72.0
Q ss_pred cHHHHHhhhhHHHHcC--CCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-..+.+-++.+++.+ +++|||=.=+. .+|. .+..|+.+|-. .++|++++|++|+|||+-+.+- ...
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy~----~~~~---~Ft~d~~~FPd---p~~mv~~L~~~G~klv~~i~P~-i~~ 90 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDFQ----DNYR---TFTTNGGGFPN---PKEMFDNLHNKGLKCSTNITPV-ISY 90 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCchh----cCCC---ceeecCCCCCC---HHHHHHHHHHCCCeEEEEecCc-eec
Confidence 4566777777777755 46677653221 2332 24455346653 5789999999999999887652 210
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 014447 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 198 (424)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDG 198 (424)
+ ..|. +. ... .|+.||++|+.-.+..+.+.+ .||||
T Consensus 91 --------------g-----~~~~-------------~~---------~~~--pDftnp~ar~wW~~~~~~l~~-~Gv~~ 126 (332)
T cd06601 91 --------------G-----GGLG-------------SP---------GLY--PDLGRPDVREWWGNQYKYLFD-IGLEF 126 (332)
T ss_pred --------------C-----ccCC-------------CC---------cee--eCCCCHHHHHHHHHHHHHHHh-CCCce
Confidence 0 0010 00 011 567899999999888888887 89999
Q ss_pred EEecccC
Q 014447 199 WRFDFVK 205 (424)
Q Consensus 199 fR~D~a~ 205 (424)
|=.|+..
T Consensus 127 ~W~DmnE 133 (332)
T cd06601 127 VWQDMTT 133 (332)
T ss_pred eecCCCC
Confidence 9999863
|
GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes. |
| >PLN02763 hydrolase, hydrolyzing O-glycosyl compounds | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.35 Score=53.17 Aligned_cols=134 Identities=19% Similarity=0.294 Sum_probs=73.1
Q ss_pred HHHHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 42 YNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
-+.+.+-++.+++.|| ++|||--= .-.||.. +..|+.+|- +.++|++++|++|+|++.=+.+ ++..+
T Consensus 200 q~eV~eva~~fre~~IP~DvIwlDid----Ym~g~~~---FTwD~~rFP---dP~~mv~~Lh~~G~kvv~iidP-gI~~d 268 (978)
T PLN02763 200 AKRVAEIARTFREKKIPCDVVWMDID----YMDGFRC---FTFDKERFP---DPKGLADDLHSIGFKAIWMLDP-GIKAE 268 (978)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEehh----hhcCCCc---eeECcccCC---CHHHHHHHHHHCCCEEEEEEcC-CCccC
Confidence 4455555666655443 45554311 1123332 345533564 5689999999999999865433 22211
Q ss_pred CCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 014447 120 RKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAP-DIDHLNPRVQKELSDWMNWLKTEIGFDG 198 (424)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dln~~np~v~~~l~~~~~~w~~~~gvDG 198 (424)
..|..+..+.... .| +. +..+....+..|++.. =.|+.||++|+...+.++.+++ .||||
T Consensus 269 -----~gY~~y~eg~~~~--~f-----vk------~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d-~GVDG 329 (978)
T PLN02763 269 -----EGYFVYDSGCEND--VW-----IQ------TADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVS-NGVDG 329 (978)
T ss_pred -----CCCHHHHhHhhcC--ee-----EE------CCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhc-CCCcE
Confidence 1233232211000 00 00 0001111122232221 1588999999999999999988 99999
Q ss_pred EEecccC
Q 014447 199 WRFDFVK 205 (424)
Q Consensus 199 fR~D~a~ 205 (424)
|=+|+-.
T Consensus 330 ~W~DmnE 336 (978)
T PLN02763 330 IWNDMNE 336 (978)
T ss_pred EEccCCC
Confidence 9999843
|
|
| >cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.4 Score=41.30 Aligned_cols=65 Identities=23% Similarity=0.385 Sum_probs=44.1
Q ss_pred CcHHHHHhhhhHHHHcC--CCEEEeCCCCCCCCCCCCCcccc-cCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 40 GWYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRL-YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lG--v~~I~l~Pi~~~~~~~gY~~~d~-~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.+-+.+.+.++.+++.| +++|+|-.-+.. +| .++ ...|+.+|- +.++||+++|++|++|++-+.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~----~~--~~f~~~~d~~~Fp---dp~~~i~~l~~~g~~~~~~~~P 88 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTD----GY--GDFTFDWDAGKFP---NPKSMIDELHDNGVKLVLWIDP 88 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECccccc----CC--ceeeeecChhhCC---CHHHHHHHHHHCCCEEEEEeCh
Confidence 45678888888888754 568887654332 22 222 245524565 4688999999999999996654
|
All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes |
| >cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB) | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.5 Score=46.15 Aligned_cols=136 Identities=15% Similarity=0.187 Sum_probs=77.1
Q ss_pred cHHHHHhhhhHHHHcC--CCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-..+.+-++.+++.| ++.|+|-.=+ ..+|.. +..|+.+|- +.+.||+++|++|+||++-+.+- +..
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~----~~~~~~---f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~-v~~ 90 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEH----TDGKRY---FTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPH-IKR 90 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHH----hCCCCc---eEeCcccCC---CHHHHHHHHHHCCCEEEEEecCc-eec
Confidence 4567888888887755 4667765321 123332 455633565 56899999999999999988764 322
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHH--hcC
Q 014447 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ-PAPDIDHLNPRVQKELSDWMNWLKT--EIG 195 (424)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~np~v~~~l~~~~~~w~~--~~g 195 (424)
+.. +..|..+.. .++. +.+ ..+....+..|+ ...-+|+.||++++...+.++.... ..|
T Consensus 91 ~~~-----~~~y~e~~~---~g~~----vk~------~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g 152 (339)
T cd06603 91 DDG-----YYVYKEAKD---KGYL----VKN------SDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTE 152 (339)
T ss_pred CCC-----CHHHHHHHH---CCeE----EEC------CCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCC
Confidence 210 111111000 0000 000 000000000111 1123889999999999999988774 368
Q ss_pred CCeEEecccC
Q 014447 196 FDGWRFDFVK 205 (424)
Q Consensus 196 vDGfR~D~a~ 205 (424)
+|||=+|+..
T Consensus 153 ~~g~w~D~~E 162 (339)
T cd06603 153 NLYIWNDMNE 162 (339)
T ss_pred CceEEeccCC
Confidence 9999888753
|
Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae. |
| >COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.71 E-value=4.2 Score=41.70 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=31.0
Q ss_pred eEEEeecCCCCCC-CCCcHHHHHhhhhHH-HHcCCCEEEeCCCCCC
Q 014447 25 LLFQGFNWESSNK-AGGWYNSLKNSIPDL-SNAGITHVWLPPPSQS 68 (424)
Q Consensus 25 v~~~~f~~ds~~~-~~G~~~gi~~~L~yl-k~lGv~~I~l~Pi~~~ 68 (424)
+.+|.+.-.+.+. |+|||.++.-.+.-. ..-|.+.+.|+|++..
T Consensus 16 ~~v~L~~~~~~~~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~ 61 (520)
T COG1640 16 SGVQLYSLRLPGSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHAT 61 (520)
T ss_pred ceeEEeeeccCCCCCccchhhHHHHHHHHHHHccCCeEEeccCCcc
Confidence 3444444222222 489999999987655 5999999999999863
|
|
| >cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.45 Score=46.87 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014447 174 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (424)
Q Consensus 174 ~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (424)
..+|+.|+.+++.+..+++++|.||+-+|-=
T Consensus 91 l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE 121 (358)
T cd02875 91 ISNPTYRTQWIQQKVELAKSQFMDGINIDIE 121 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeEEEccc
Confidence 4578899999888888888899999999963
|
Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase. |
| >smart00632 Aamy_C Aamy_C domain | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.3 Score=36.83 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=19.0
Q ss_pred ecCCCEEEEEECCEEEEEECCCC
Q 014447 377 ASDADVYIAAIGDRVIMKIGPKM 399 (424)
Q Consensus 377 ~~~~~v~~~~r~~~~lv~ln~~~ 399 (424)
..++++++|+|+++.+|++|+..
T Consensus 5 ~~~~~~laF~Rg~~g~VaiN~~~ 27 (81)
T smart00632 5 DNGDNQIAFERGSKGFVAINRSD 27 (81)
T ss_pred ECCCeEEEEECCCeEEEEEECCC
Confidence 34455999999999999999853
|
|
| >COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.86 Score=42.65 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=35.1
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccccCCCCCCCCCHHHH---HHHHHHHHHcCCEEEEeeec
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQADL---KSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~edl---~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.+.|.-||+-||++|-|= |+..| .+.| + +-.|+..|+ .++.++|++.||||++|+-.
T Consensus 66 qD~~~iLK~~GvNyvRlR-vwndP~dsng---------n-~yggGnnD~~k~ieiakRAk~~GmKVl~dFHY 126 (403)
T COG3867 66 QDALQILKNHGVNYVRLR-VWNDPYDSNG---------N-GYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHY 126 (403)
T ss_pred HHHHHHHHHcCcCeEEEE-EecCCccCCC---------C-ccCCCcchHHHHHHHHHHHHhcCcEEEeeccc
Confidence 346788999999998773 22222 1111 1 222333444 45567788899999999844
|
|
| >cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD) | Back alignment and domain information |
|---|
Probab=91.11 E-value=1 Score=43.38 Aligned_cols=63 Identities=27% Similarity=0.378 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 014447 88 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ 167 (424)
Q Consensus 88 Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (424)
.+.+++++-|++||++|+||++-+ +.... .
T Consensus 57 ~~~~~~~~~i~~~q~~G~KVllSi-----GG~~~-------------------------------------~-------- 86 (312)
T cd02871 57 YSPAEFKADIKALQAKGKKVLISI-----GGANG-------------------------------------H-------- 86 (312)
T ss_pred CChHHHHHHHHHHHHCCCEEEEEE-----eCCCC-------------------------------------c--------
Confidence 356789999999999999999865 21000 0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014447 168 PAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (424)
Q Consensus 168 ~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (424)
....++.-|+.+.+.+..+++++|+||+-+|-=
T Consensus 87 ----~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E 119 (312)
T cd02871 87 ----VDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLE 119 (312)
T ss_pred ----cccCCHHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 113456678888888888888899999999963
|
ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. |
| >cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.87 Score=42.42 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014447 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (424)
Q Consensus 175 ~np~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (424)
.+|+.|+.+++.+..+++++|.||+-+|-=
T Consensus 79 ~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE 108 (253)
T cd06545 79 NDPAKRKALVDKIINYVVSYNLDGIDVDLE 108 (253)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCceeEEee
Confidence 578889999998888888899999999973
|
|
| >TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.9 Score=43.62 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCC
Q 014447 166 FQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206 (424)
Q Consensus 166 ~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~ 206 (424)
|++.-.+|+++|+.++.|.+.+...++ .|+|||-+|.+..
T Consensus 132 W~g~~~vd~~~~~W~~il~~rl~~l~~-kGfDGvfLD~lDs 171 (315)
T TIGR01370 132 WPGNYDVKYWDPEWKAIAFSYLDRVIA-QGFDGVYLDLIDA 171 (315)
T ss_pred CCCceeEecccHHHHHHHHHHHHHHHH-cCCCeEeeccchh
Confidence 334445899999999999999887776 9999999998654
|
Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases. |
| >cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides | Back alignment and domain information |
|---|
Probab=90.65 E-value=2.4 Score=41.57 Aligned_cols=125 Identities=12% Similarity=0.143 Sum_probs=72.3
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccccCCC------CCCCCCHHHHHHHHHHHHHcCCEEEEeee-c
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLD------ASKYGSQADLKSLIQAFRQKGIKCLADMV-I 113 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-~~~gY~~~d~~~id------~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v-~ 113 (424)
...|.+-|+.++..++|.+++- -+. .++.+.+..|-.+- +..+=|.+|++++|+-|.++||.||-.+- |
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~H---ltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~P 93 (348)
T cd06562 17 VDSIKRTIDAMAYNKLNVLHWH---ITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDTP 93 (348)
T ss_pred HHHHHHHHHHHHHhCCcEEEEe---EEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccCc
Confidence 6778888899999999999873 111 12222222222222 01111799999999999999999998773 4
Q ss_pred ccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 014447 114 NHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (424)
Q Consensus 114 NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~ 193 (424)
.|+..--.. . +. ..+.+...|.... .-...-.||..+|++.+.+.+++..+++-
T Consensus 94 GH~~a~~~~-----~--p~------------l~~~~~~~~~~~~-------~~~~~~~L~~~~~~t~~fl~~vl~E~~~l 147 (348)
T cd06562 94 GHTGSWGQG-----Y--PE------------LLTGCYAVWRKYC-------PEPPCGQLNPTNPKTYDFLKTLFKEVSEL 147 (348)
T ss_pred hhhHHHHHh-----C--hh------------hhCCCCccccccc-------cCCCCccccCCChhHHHHHHHHHHHHHHh
Confidence 566431110 0 00 0000000000000 00112248999999999999999988875
Q ss_pred cC
Q 014447 194 IG 195 (424)
Q Consensus 194 ~g 195 (424)
|.
T Consensus 148 F~ 149 (348)
T cd06562 148 FP 149 (348)
T ss_pred cC
Confidence 54
|
The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in |
| >cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin | Back alignment and domain information |
|---|
Probab=90.57 E-value=3 Score=40.16 Aligned_cols=125 Identities=12% Similarity=0.123 Sum_probs=70.4
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCC----CCCCCCHHHHHHHHHHHHHcCCEEEEeee-cccC
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD----ASKYGSQADLKSLIQAFRQKGIKCLADMV-INHR 116 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id----~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v-~NH~ 116 (424)
...|.+.|+.++..++|.+++-=. + ..++.+.+..|-.+- ...+=|.+|++++|+-|.++||+||-.+- |-|+
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~Hlt-D-d~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH~ 94 (311)
T cd06570 17 VAVIKRQLDAMASVKLNVFHWHLT-D-DQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGHA 94 (311)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEe-c-CCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccch
Confidence 677888899999999998887310 0 011222222222221 01122789999999999999999997763 4566
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 014447 117 TAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 194 (424)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~ 194 (424)
..--.. +++ ...+......... + . ..-+.||..+|++.+.+.+.+..+++-|
T Consensus 95 ~a~~~~-------ype-----------l~~~~~~~~~~~~------~-~-~~~~~l~~~~p~t~~f~~~l~~E~~~lF 146 (311)
T cd06570 95 SAIAVA-------YPE-----------LASGPGPYVIERG------W-G-VFEPLLDPTNEETYTFLDNLFGEMAELF 146 (311)
T ss_pred HHHHHh-------CHH-----------hccCCCccccccc------c-c-cCCCccCCCChhHHHHHHHHHHHHHHhC
Confidence 421100 000 0000000000000 0 0 0112499999999999999998888633
|
Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. |
| >PLN03059 beta-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.74 Score=49.60 Aligned_cols=100 Identities=13% Similarity=0.158 Sum_probs=59.0
Q ss_pred ccchhhhHhhhhccCCCCCC---ceEEE--eecCCCCCC---------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCC-C
Q 014447 4 LKSFCFLSFLLAIFLPFTSP---ALLFQ--GFNWESSNK---------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQ-S 68 (424)
Q Consensus 4 ~~~~~~~~~~~~~~p~~~~~---~v~~~--~f~~ds~~~---------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~-~ 68 (424)
+++|++++++....+.|+-. .|-|. .|.-|-.+- -+=.=.-..++|.-+|.+|+|+|..==++. +
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~H 85 (840)
T PLN03059 6 LVVFLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGH 85 (840)
T ss_pred eehhhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 45667776666666777633 23332 221110000 011224566888899999999998532221 1
Q ss_pred CCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 69 VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 69 ~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
....| . -.|.+..||.+|++.|++.||.|||=.=+
T Consensus 86 Ep~~G--~--------~dF~G~~DL~~Fl~la~e~GLyvilRpGP 120 (840)
T PLN03059 86 EPSPG--N--------YYFEDRYDLVKFIKVVQAAGLYVHLRIGP 120 (840)
T ss_pred CCCCC--e--------eeccchHHHHHHHHHHHHcCCEEEecCCc
Confidence 11111 1 12335789999999999999999986544
|
|
| >PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.48 Score=55.00 Aligned_cols=69 Identities=19% Similarity=0.219 Sum_probs=57.1
Q ss_pred ceEEEeecCCCCCC-CCCcHHHHHhhhhHHHHcCCCEEEeCCCCC---CC--CCCCCCcccccCCCCCCCCCHHHH
Q 014447 24 ALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPSQ---SV--APQGYMPGRLYDLDASKYGSQADL 93 (424)
Q Consensus 24 ~v~~~~f~~ds~~~-~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~---~~--~~~gY~~~d~~~id~~~~Gt~edl 93 (424)
+++.|+|...|.+. |+|||.++.+-++.+++.|.+.|.|+|++. .. .+..|++.+-+.+| |-|=+.+++
T Consensus 174 G~~~qLYsLRS~~~~GIGDfgdL~~~~d~la~~Ga~~lqlnPLhA~~p~~p~~~SPYsp~Sr~alN-PlYIdle~l 248 (1693)
T PRK14507 174 GLAAQLYGLRSARNWGIGDFGDLGRLVRDAALRGASFLGLSPLHALFPTDPAKASPYSPSSRLFLN-TLYIDVEAV 248 (1693)
T ss_pred EEEeeeeeeeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcCcccccccC-hHhcCHhhc
Confidence 68999998888776 479999999999999999999999999993 21 45679999988888 777665444
|
|
| >COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.71 E-value=7.3 Score=36.32 Aligned_cols=123 Identities=20% Similarity=0.310 Sum_probs=77.4
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCC
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK 121 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~ 121 (424)
++-+-.++.-|.+-+++.+.+=|= +...+ ..=.+.|++|.+ .+.|.++|.=+-+-... ++.
T Consensus 29 ~ql~d~~~~~i~~~~f~llVVDps-------------~~g~~-~~~~~~eelr~~----~~gg~~pIAYlsIg~ae-~yR 89 (300)
T COG2342 29 YQLQDAYINEILNSPFDLLVVDPS-------------YCGPF-NTPWTIEELRTK----ADGGVKPIAYLSIGEAE-SYR 89 (300)
T ss_pred hhcccchHHHHhcCCCcEEEEecc-------------ccCCC-CCcCcHHHHHHH----hcCCeeEEEEEechhhh-hhh
Confidence 444457788888889998888762 22233 444568888876 66788888888876442 221
Q ss_pred CCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEe
Q 014447 122 DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201 (424)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~ 201 (424)
. | +...-...+++|-.. .++ ++.++| ...|..|+=++.+.+++..+++ .|+||.-+
T Consensus 90 ~----Y--wd~~w~~~~p~wLg~----edP---~W~Gny----------~VkYW~~eWkdii~~~l~rL~d-~GfdGvyL 145 (300)
T COG2342 90 F----Y--WDKYWLTGRPDWLGE----EDP---EWPGNY----------AVKYWEPEWKDIIRSYLDRLID-QGFDGVYL 145 (300)
T ss_pred h----H--hhhhhhcCCcccccC----CCC---CCCCCc----------eeeccCHHHHHHHHHHHHHHHH-ccCceEEE
Confidence 0 0 111001122333211 111 122232 3788999999999999999998 99999999
Q ss_pred cccCCC
Q 014447 202 DFVKGY 207 (424)
Q Consensus 202 D~a~~~ 207 (424)
|.+...
T Consensus 146 D~VD~y 151 (300)
T COG2342 146 DVVDAY 151 (300)
T ss_pred eeechH
Confidence 998654
|
|
| >PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=89.10 E-value=0.38 Score=46.53 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=37.4
Q ss_pred HHHhhhhHHHHcCCCEEEeCCCCC-CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 44 SLKNSIPDLSNAGITHVWLPPPSQ-SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi~~-~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
-..++|..+|.+|+|+|..-=++. +....| ..||. ...||++|++.|+++||.|||-.=+=
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g--~~df~--------g~~dl~~f~~~a~~~gl~vilrpGpy 86 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEEG--QFDFT--------GNRDLDRFLDLAQENGLYVILRPGPY 86 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBTT--B---S--------GGG-HHHHHHHHHHTT-EEEEEEES-
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCCC--ccccc--------chhhHHHHHHHHHHcCcEEEecccce
Confidence 455788999999999998743222 111111 23332 24589999999999999999886553
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B .... |
| >PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane | Back alignment and domain information |
|---|
Probab=88.89 E-value=0.86 Score=43.31 Aligned_cols=55 Identities=25% Similarity=0.434 Sum_probs=32.9
Q ss_pred HHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCC
Q 014447 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK 121 (424)
Q Consensus 45 i~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~ 121 (424)
...-+++||+||+|+|-+ |.|| |..- =....+++.+.||.||+|+-.-+++.+..
T Consensus 55 C~rDi~~l~~LgiNtIRV-----------------Y~vd-p~~n----Hd~CM~~~~~aGIYvi~Dl~~p~~sI~r~ 109 (314)
T PF03198_consen 55 CKRDIPLLKELGINTIRV-----------------YSVD-PSKN----HDECMSAFADAGIYVILDLNTPNGSINRS 109 (314)
T ss_dssp HHHHHHHHHHHT-SEEEE-----------------S----TTS------HHHHHHHHHTT-EEEEES-BTTBS--TT
T ss_pred HHHhHHHHHHcCCCEEEE-----------------EEeC-CCCC----HHHHHHHHHhCCCEEEEecCCCCccccCC
Confidence 333468999999999995 5677 6553 33344456779999999998887766543
|
It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A. |
| >PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=88.87 E-value=3 Score=39.17 Aligned_cols=64 Identities=17% Similarity=0.029 Sum_probs=41.8
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCC-CCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQG-YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~g-Y~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD 110 (424)
+-+......-+|+-+++|+.+|.+-=-+. .++ =...|+.... + ..++++||+=|+++|++|+|=
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~---~~~~~~~~d~~~~~-~----~~dl~elv~Ya~~KgVgi~lw 92 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWY---GWEKDDDFDFTKPI-P----DFDLPELVDYAKEKGVGIWLW 92 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCC---GS--TTT--TT-B--T----T--HHHHHHHHHHTT-EEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccc---cccccccccccccC-C----ccCHHHHHHHHHHcCCCEEEE
Confidence 56899999999999999999999921111 111 1345555565 3 478999999999999999873
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A. |
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=88.58 E-value=1.3 Score=40.64 Aligned_cols=45 Identities=16% Similarity=0.326 Sum_probs=37.1
Q ss_pred hhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 48 SIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 48 ~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
-|++.|+|||++|+|+- | +..+. .++..++|+.+++.|++|+-.+
T Consensus 76 Yl~~~k~lGf~~IEiS~--------G-----~~~i~------~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 76 YLNECDELGFEAVEISD--------G-----SMEIS------LEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHcCCCEEEEcC--------C-----ccCCC------HHHHHHHHHHHHhCCCeEeccc
Confidence 35599999999999983 2 34466 8899999999999999999664
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides | Back alignment and domain information |
|---|
Probab=88.16 E-value=1.8 Score=41.53 Aligned_cols=123 Identities=18% Similarity=0.159 Sum_probs=70.7
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCC----------CCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD----------ASKYGSQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id----------~~~~Gt~edl~~Lv~~aH~~Gi~VilD 110 (424)
+...|.+-|+.++..++|.++|-=- . ..++.+....|-.+- +..+=|.+|+++||+-|.++||.||-.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~-D-~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLT-D-DQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeee-c-CCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEe
Confidence 4677888899999999999987410 0 011122222221111 011226899999999999999999977
Q ss_pred ee-cccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 014447 111 MV-INHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNW 189 (424)
Q Consensus 111 ~v-~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~ 189 (424)
+- |.|+..--.. +++ . ...|.....+. ...-.||..+|++.+.+.+.+..
T Consensus 92 iD~PGH~~a~~~~-------~p~---l-------~~~~~~~~~~~------------~~~~~l~~~~~~t~~fl~~l~~e 142 (303)
T cd02742 92 IDMPGHSTAFVKS-------FPK---L-------LTECYAGLKLR------------DVFDPLDPTLPKGYDFLDDLFGE 142 (303)
T ss_pred ccchHHHHHHHHh-------CHH---h-------ccCccccCCCC------------CCCCccCCCCccHHHHHHHHHHH
Confidence 63 4566421100 000 0 00000000000 01124899999999999999999
Q ss_pred HHHhc
Q 014447 190 LKTEI 194 (424)
Q Consensus 190 w~~~~ 194 (424)
+++-+
T Consensus 143 ~~~lf 147 (303)
T cd02742 143 IAELF 147 (303)
T ss_pred HHHhC
Confidence 88744
|
These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself. |
| >TIGR03356 BGL beta-galactosidase | Back alignment and domain information |
|---|
Probab=87.94 E-value=1.8 Score=43.62 Aligned_cols=65 Identities=11% Similarity=0.215 Sum_probs=45.2
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
..+.-..+-++-+|+||++++-++=-+.-.-..|-. .+| -...+-++++|++|+++||++|+++.
T Consensus 51 d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~-----~~n---~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 51 DHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTG-----PVN---PKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCC-----CcC---HHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 357788899999999999999976322211111100 112 11256789999999999999999985
|
|
| >PLN03236 4-alpha-glucanotransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.93 E-value=0.82 Score=48.86 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCEEEEeeecccCCCCCC
Q 014447 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERK 121 (424)
Q Consensus 91 edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~ 121 (424)
++++++.+.|+++||+|+-|+.+- ++.++.
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIg-Va~dSa 303 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIG-VDKASV 303 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece-eCCCcH
Confidence 578888899999999999999994 555543
|
|
| >smart00812 Alpha_L_fucos Alpha-L-fucosidase | Back alignment and domain information |
|---|
Probab=87.69 E-value=5.4 Score=39.64 Aligned_cols=133 Identities=18% Similarity=0.104 Sum_probs=77.0
Q ss_pred HhhhhHHHHcCCCEEEeCCCCC-CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCC
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQ-SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR 124 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~-~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~ 124 (424)
.+-++-+|+.|.++|.|+-=+- +..-+.-..++|..++ ... ..+=+++|++||+++||++-+= |..
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~-~~p-krDiv~el~~A~rk~Glk~G~Y----~S~------- 150 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVD-TGP-KRDLVGELADAVRKRGLKFGLY----HSL------- 150 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccC-CCC-CcchHHHHHHHHHHcCCeEEEE----cCH-------
Confidence 3446688999999999886432 1111222234555566 444 4578999999999999999982 221
Q ss_pred cceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHhcCCCeEEe
Q 014447 125 GIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKEL---SDWMNWLKTEIGFDGWRF 201 (424)
Q Consensus 125 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l---~~~~~~w~~~~gvDGfR~ 201 (424)
.+|....+ .+. . .........+.-.+++ ...++.++..+|-|.+=+
T Consensus 151 --------------~DW~~p~y-------~~~---~-------~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWf 199 (384)
T smart00812 151 --------------FDWFNPLY-------AGP---T-------SSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWF 199 (384)
T ss_pred --------------HHhCCCcc-------ccc---c-------ccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 11211000 000 0 0000011223455666 788889999999999999
Q ss_pred cccCCCCHHH-----HHHHHHhcCCC
Q 014447 202 DFVKGYAPSI-----TKVYMENTSPD 222 (424)
Q Consensus 202 D~a~~~~~~~-----~~~~~~~~~p~ 222 (424)
|..-.-+... +.+++++..|.
T Consensus 200 D~~~~~~~~~~~~~~l~~~~~~~qP~ 225 (384)
T smart00812 200 DGGWEAPDDYWRSKEFLAWLYNLSPV 225 (384)
T ss_pred eCCCCCccchhcHHHHHHHHHHhCCC
Confidence 9864333321 22235666673
|
O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis. |
| >cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins | Back alignment and domain information |
|---|
Probab=87.63 E-value=4.1 Score=39.54 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=73.7
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeC-------CCCCCC--C-CCCCCc------ccccCCC-CCCCCCHHHHHHHHHHHHHc
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLP-------PPSQSV--A-PQGYMP------GRLYDLD-ASKYGSQADLKSLIQAFRQK 103 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~-------Pi~~~~--~-~~gY~~------~d~~~id-~~~~Gt~edl~~Lv~~aH~~ 103 (424)
+..-|.+-|+.++..++|.++|- ++-..| . ...|.. ..+.... ...+=|.+|+|++|+-|.++
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~r 94 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKDR 94 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHHc
Confidence 36778888899999999999982 111111 0 000100 0001111 01222799999999999999
Q ss_pred CCEEEEeee-cccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 014447 104 GIKCLADMV-INHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKE 182 (424)
Q Consensus 104 Gi~VilD~v-~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~ 182 (424)
||.||-.+- |-|+..--.. ++. ..+.+. ......-.||..+|++.++
T Consensus 95 gI~vIPEID~PGH~~a~~~~-------~pe------------l~~~~~-------------~~~~~~~~l~~~~~~t~~f 142 (326)
T cd06564 95 GVNIIPEIDSPGHSLAFTKA-------MPE------------LGLKNP-------------FSKYDKDTLDISNPEAVKF 142 (326)
T ss_pred CCeEeccCCCcHHHHHHHHh-------hHH------------hcCCCc-------------ccCCCcccccCCCHHHHHH
Confidence 999997663 4565321000 000 000000 0111222489999999999
Q ss_pred HHHHHHHHHHhcC--CCeEEe
Q 014447 183 LSDWMNWLKTEIG--FDGWRF 201 (424)
Q Consensus 183 l~~~~~~w~~~~g--vDGfR~ 201 (424)
+.+.+...++-|. -+=|-+
T Consensus 143 ~~~l~~E~~~~f~~~~~~~Hi 163 (326)
T cd06564 143 VKALFDEYLDGFNPKSDTVHI 163 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEe
Confidence 9999999988665 344443
|
Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. |
| >cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin | Back alignment and domain information |
|---|
Probab=86.03 E-value=3.2 Score=42.14 Aligned_cols=93 Identities=11% Similarity=0.098 Sum_probs=56.2
Q ss_pred CCCCCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeC-------CC--CCCC------CCCCCCcccccCC
Q 014447 18 LPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLP-------PP--SQSV------APQGYMPGRLYDL 82 (424)
Q Consensus 18 p~~~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~-------Pi--~~~~------~~~gY~~~d~~~i 82 (424)
|.+.-+++|+-+=- ... +...|.+-||.+...++|.+++- |+ -..| .+.++...+...+
T Consensus 3 Prf~~RGlmLDvaR-~f~-----~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~ 76 (445)
T cd06569 3 PRFEYRGMHLDVAR-NFH-----SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCL 76 (445)
T ss_pred CCCcccceeeeccC-CCC-----CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhccccccccccccccc
Confidence 55666666653221 111 47788888899999999998874 11 0011 1222222222222
Q ss_pred CCCCCC-------------CHHHHHHHHHHHHHcCCEEEEee-ecccCC
Q 014447 83 DASKYG-------------SQADLKSLIQAFRQKGIKCLADM-VINHRT 117 (424)
Q Consensus 83 d~~~~G-------------t~edl~~Lv~~aH~~Gi~VilD~-v~NH~~ 117 (424)
- |.+| |.+|++++|+-|++|||.||-.+ ++-|+.
T Consensus 77 ~-~~~~~~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~ 124 (445)
T cd06569 77 L-PQLGSGPDTNNSGSGYYSRADYIEILKYAKARHIEVIPEIDMPGHAR 124 (445)
T ss_pred c-cccccCcccCcccCCccCHHHHHHHHHHHHHcCCEEEEccCCchhHH
Confidence 2 2221 79999999999999999999776 345664
|
Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. |
| >PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D | Back alignment and domain information |
|---|
Probab=85.63 E-value=2 Score=40.90 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=40.6
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCC-----CCCCCCc--------ccccCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV-----APQGYMP--------GRLYDLDASKYGSQADLKSLIQAFRQKGIKC 107 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-----~~~gY~~--------~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~V 107 (424)
+...+..-|+.+|+.|||.|++.=+.+.. +..|..+ .|+..++ +.| -+-+.+.|+.|.++||.+
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N-~~Y--F~~~d~~i~~a~~~Gi~~ 104 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPN-PAY--FDHLDRRIEKANELGIEA 104 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT-----H--HHHHHHHHHHHHHTT-EE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCC-HHH--HHHHHHHHHHHHHCCCeE
Confidence 34566667999999999999996544421 2233333 3555666 444 578999999999999988
Q ss_pred EEeeeccc
Q 014447 108 LADMVINH 115 (424)
Q Consensus 108 ilD~v~NH 115 (424)
+||+-|
T Consensus 105 --~lv~~w 110 (289)
T PF13204_consen 105 --ALVPFW 110 (289)
T ss_dssp --EEESS-
T ss_pred --EEEEEE
Confidence 577765
|
|
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=85.00 E-value=6.9 Score=39.66 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=35.8
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
|++ ++|...-+.|.++|++..-. |..+-. . ..| +.+++++.|+.||++|.+|.+
T Consensus 11 g~~----e~l~aAi~~GADaVY~G~~~-------~~~R~~---~-~~f-~~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 11 GTL----KNMRYAFAYGADAVYAGQPR-------YSLRVR---N-NEF-NHENLALGINEAHALGKKFYV 64 (443)
T ss_pred CCH----HHHHHHHHCCCCEEEECCCc-------cchhhh---c-cCC-CHHHHHHHHHHHHHcCCEEEE
Confidence 566 44445557799999996421 111110 1 122 368999999999999999987
|
|
| >PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=84.43 E-value=10 Score=37.16 Aligned_cols=142 Identities=15% Similarity=0.023 Sum_probs=72.0
Q ss_pred hhhhHHHHcCCCEEEeCCCCCC-CCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCc
Q 014447 47 NSIPDLSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG 125 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~ 125 (424)
+-++-+|+.|.++|.|+--+-. ..=+.-..++|..++ ...+ .+=+++|++||+++|||+.+=+- ..
T Consensus 95 qW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~-~~~k-rDiv~El~~A~rk~Glk~G~Y~S---~~-------- 161 (346)
T PF01120_consen 95 QWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVN-SGPK-RDIVGELADACRKYGLKFGLYYS---PW-------- 161 (346)
T ss_dssp HHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGG-GGGT-S-HHHHHHHHHHHTT-EEEEEEE---SS--------
T ss_pred HHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccC-CCCC-CCHHHHHHHHHHHcCCeEEEEec---ch--------
Confidence 3456789999999999865431 111111223333333 2222 46799999999999999999222 11
Q ss_pred ceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014447 126 IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHL-NPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (424)
Q Consensus 126 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~-np~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (424)
+|.......... .+... .++..-. ...+.+++...++.+++++.+|++=+|..
T Consensus 162 --------------dw~~~~~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~ 215 (346)
T PF01120_consen 162 --------------DWHHPDYPPDEE--GDENG----------PADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGG 215 (346)
T ss_dssp --------------SCCCTTTTSSCH--CHHCC------------HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEEST
T ss_pred --------------HhcCcccCCCcc--CCccc----------ccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCC
Confidence 111100000000 00000 0000000 11245578888999999999999999997
Q ss_pred CCCCHH-----HHHHHHHhcCCCeEEee
Q 014447 205 KGYAPS-----ITKVYMENTSPDFAVGE 227 (424)
Q Consensus 205 ~~~~~~-----~~~~~~~~~~p~~~v~E 227 (424)
..-+.+ -+...+++..|..+|.-
T Consensus 216 ~~~~~~~~~~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 216 WPDPDEDWDSAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp TSCCCTHHHHHHHHHHHHHHSTTSEEEC
T ss_pred CCccccccCHHHHHHHHHHhCCeEEEec
Confidence 653221 12223566677444433
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B .... |
| >PLN02950 4-alpha-glucanotransferase | Back alignment and domain information |
|---|
Probab=84.26 E-value=2.6 Score=46.58 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCEEEEeeecccCCCCCC
Q 014447 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERK 121 (424)
Q Consensus 91 edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~ 121 (424)
++++++.+.|+++||+|+.|+.+- ++.++.
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpig-V~~dSa 490 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIG-VDRNSV 490 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece-eCCCcH
Confidence 578889999999999999999994 555443
|
|
| >PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds [] | Back alignment and domain information |
|---|
Probab=84.08 E-value=1.9 Score=39.68 Aligned_cols=55 Identities=20% Similarity=0.374 Sum_probs=39.0
Q ss_pred CCcHHH-------HHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 39 GGWYNS-------LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 39 ~G~~~g-------i~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
||||-. +.+-|++.|+|||++|+++= | +..+. .++..++|+.+.++|++|+-.+
T Consensus 73 GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSd--------G-----ti~l~------~~~r~~~I~~~~~~Gf~v~~Ev 133 (244)
T PF02679_consen 73 GGTLFEVAYQQGKFDEYLEECKELGFDAIEISD--------G-----TIDLP------EEERLRLIRKAKEEGFKVLSEV 133 (244)
T ss_dssp -HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE----------S-----SS---------HHHHHHHHHHHCCTTSEEEEEE
T ss_pred CcHHHHHHHhcChHHHHHHHHHHcCCCEEEecC--------C-----ceeCC------HHHHHHHHHHHHHCCCEEeecc
Confidence 566544 44567899999999999983 2 33455 7899999999999999998776
Q ss_pred e
Q 014447 112 V 112 (424)
Q Consensus 112 v 112 (424)
=
T Consensus 134 G 134 (244)
T PF02679_consen 134 G 134 (244)
T ss_dssp S
T ss_pred c
Confidence 4
|
Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A. |
| >COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.02 E-value=1 Score=47.32 Aligned_cols=72 Identities=21% Similarity=0.180 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC--CHHHHHHHHHhcCC-CeEEeee
Q 014447 157 QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY--APSITKVYMENTSP-DFAVGEK 228 (424)
Q Consensus 157 ~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~--~~~~~~~~~~~~~p-~~~v~E~ 228 (424)
.-+|.......++.-+.-+.+.|.+.--..+..|++|-=|||.|+|.+..+ |...++.+-++..| .+++-|-
T Consensus 258 ~inyRRFF~Vn~L~glRvEd~~VF~~tH~li~~L~~eglidGlRIDHiDGLaDP~gYl~rLR~~~G~~~~I~VEK 332 (889)
T COG3280 258 EINYRRFFDVNSLAGLRVEDPAVFEATHRLIFELLREGLIDGLRIDHIDGLADPKGYLRRLRQLVGPDRYIVVEK 332 (889)
T ss_pred ccCeeeeeeccchheeeeccHHHHHHHHHHHHHHHHhccccceeecccccccCHHHHHHHHHHhcCCCcEEEEeh
Confidence 346666667788888999999999999999999999777999999999888 44566666555554 5555554
|
|
| >cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex) | Back alignment and domain information |
|---|
Probab=83.80 E-value=3.6 Score=39.99 Aligned_cols=126 Identities=15% Similarity=0.093 Sum_probs=72.0
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCC-----------CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD-----------ASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id-----------~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
+...|.+-||.++..++|.+++----. .++...+..|-++- +..+=|.+|+++||+-|.++||+||-
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~--~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDD--QGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecC--CcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 477788889999999999999853110 11222222221111 01122799999999999999999997
Q ss_pred eee-cccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccC-CCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 014447 110 DMV-INHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRG-DKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWM 187 (424)
Q Consensus 110 D~v-~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~ 187 (424)
.+- +-|+..--.. ++. ..+.. .... + ...-.....||..+|++.+.+.+.+
T Consensus 94 EiD~PGH~~a~~~~-------~p~------------l~~~~~~~~~------~--~~~~~~~~~l~~~~~~t~~fl~~v~ 146 (329)
T cd06568 94 EIDMPGHTNAALAA-------YPE------------LNCDGKAKPL------Y--TGIEVGFSSLDVDKPTTYEFVDDVF 146 (329)
T ss_pred ecCCcHHHHHHHHh-------Chh------------hccCCCCCcc------c--cccCCCCcccCCCCHHHHHHHHHHH
Confidence 763 3454321000 000 00000 0000 0 0000112358999999999999999
Q ss_pred HHHHHhcC
Q 014447 188 NWLKTEIG 195 (424)
Q Consensus 188 ~~w~~~~g 195 (424)
..+++-+-
T Consensus 147 ~E~~~~f~ 154 (329)
T cd06568 147 RELAALTP 154 (329)
T ss_pred HHHHHhCC
Confidence 98887443
|
SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. |
| >PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=83.64 E-value=2.8 Score=32.28 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=27.5
Q ss_pred ecCCCEEEEEECC----EEEEEECCCCC-------CCCcCCCCcEEEEeCCcEE
Q 014447 377 ASDADVYIAAIGD----RVIMKIGPKMD-------IGNLIPSDFKVAADGTDYA 419 (424)
Q Consensus 377 ~~~~~v~~~~r~~----~~lv~ln~~~~-------~~~~~~~~~~~~~~~~~~~ 419 (424)
..++.++||.|.+ .++|++|.+.. ++-...+.|++.++++...
T Consensus 6 d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~~ 59 (95)
T PF02806_consen 6 DNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDDEE 59 (95)
T ss_dssp EESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTCEE
T ss_pred cCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCCcceeeEEeCCCccE
Confidence 4678999999932 68999997543 2222244666666665544
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A .... |
| >PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants | Back alignment and domain information |
|---|
Probab=82.91 E-value=0.75 Score=39.72 Aligned_cols=49 Identities=10% Similarity=0.224 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeE-------EEec----CCCEEEEEE-C------------CEEEEEECCCCC
Q 014447 352 KEAISKLAAVRNRNGINTASRVN-------ILAS----DADVYIAAI-G------------DRVIMKIGPKMD 400 (424)
Q Consensus 352 ~~~~~~L~~lR~~~~al~~G~~~-------~~~~----~~~v~~~~r-~------------~~~lv~ln~~~~ 400 (424)
.+++++|++||+.+|.++-+.-+ .... .++++++.. + +.++|++|.+.+
T Consensus 44 ~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~~ 116 (168)
T PF11852_consen 44 SAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATPE 116 (168)
T ss_dssp HHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SSS
T ss_pred HHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCCC
Confidence 68999999999999998766532 2222 368999885 2 358899998654
|
Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A. |
| >PF14883 GHL13: Hypothetical glycosyl hydrolase family 13 | Back alignment and domain information |
|---|
Probab=82.89 E-value=30 Score=32.68 Aligned_cols=122 Identities=18% Similarity=0.199 Sum_probs=72.5
Q ss_pred HHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHH-HHHHHHHHH-HcCCEEEEeeecccCCCCCCC
Q 014447 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQAD-LKSLIQAFR-QKGIKCLADMVINHRTAERKD 122 (424)
Q Consensus 45 i~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~ed-l~~Lv~~aH-~~Gi~VilD~v~NH~~~~~~~ 122 (424)
+-+-+++|+++|+++|+|-++....++.-.+. .|=++ .++=-.+| |-+.+=+++ +.|++|..=+.+ .+-+-+.
T Consensus 19 l~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~--~YFpn-r~lpvraDlf~rvawql~tr~~v~VyAWMPv--laf~lp~ 93 (294)
T PF14883_consen 19 LDKLIQRIKDMGINTVYLQAFADPDGDGNADA--VYFPN-RHLPVRADLFNRVAWQLRTRAGVKVYAWMPV--LAFDLPK 93 (294)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeCCCCCCceee--EEcCC-CCCchHHHHHHHHHHHHhhhhCCEEEEeeeh--hhccCCC
Confidence 33456789999999999998876533322222 22234 44444455 555553555 899999988776 3222110
Q ss_pred CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEe
Q 014447 123 GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201 (424)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~ 201 (424)
. ..+....... ..-.....|..-+|++|+.|.++.+-+..--.+||+=+
T Consensus 94 ~---------------~~~~~~~~~~---------------~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILF 142 (294)
T PF14883_consen 94 V---------------KRADEVRTDR---------------PDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILF 142 (294)
T ss_pred c---------------chhhhccccC---------------CCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 0 0000000000 00112223777789999999999999998449999988
|
|
| >cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin | Back alignment and domain information |
|---|
Probab=81.16 E-value=19 Score=35.43 Aligned_cols=126 Identities=10% Similarity=0.070 Sum_probs=69.0
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCC------CCCCC------CCCCCccc-------ccCCCCC--CCCCHHHHHHHHHHH
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPP------SQSVA------PQGYMPGR-------LYDLDAS--KYGSQADLKSLIQAF 100 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi------~~~~~------~~gY~~~d-------~~~id~~--~~Gt~edl~~Lv~~a 100 (424)
...|.+-++.++..++|.+++--- .+.+. ..+|...+ ..... + .+=|.+|++++|+-|
T Consensus 17 ~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~-~~~~~YT~~di~eiv~yA 95 (357)
T cd06563 17 VDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGT-PYGGFYTQEEIREIVAYA 95 (357)
T ss_pred HHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCC-ccCceECHHHHHHHHHHH
Confidence 677888889999999999998421 01110 01111111 01111 1 111699999999999
Q ss_pred HHcCCEEEEeee-cccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 014447 101 RQKGIKCLADMV-INHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRV 179 (424)
Q Consensus 101 H~~Gi~VilD~v-~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v 179 (424)
.++||+||-.+- |.|+..--.. ++. ..+.+... . .........-.||..+|++
T Consensus 96 ~~rgI~VIPEID~PGH~~a~l~~-------~pe------------l~~~~~~~------~-~~~~~~~~~~~L~~~~~~t 149 (357)
T cd06563 96 AERGITVIPEIDMPGHALAALAA-------YPE------------LGCTGGPG------S-VVSVQGVVSNVLCPGKPET 149 (357)
T ss_pred HHcCCEEEEecCCchhHHHHHHh-------Ccc------------ccCCCCCC------c-cccccCcCCCccCCCChhH
Confidence 999999997753 4555321000 000 00000000 0 0000011122389999999
Q ss_pred HHHHHHHHHHHHHhc
Q 014447 180 QKELSDWMNWLKTEI 194 (424)
Q Consensus 180 ~~~l~~~~~~w~~~~ 194 (424)
.+.+.+.+..+++-|
T Consensus 150 ~~f~~~ll~E~~~lF 164 (357)
T cd06563 150 YTFLEDVLDEVAELF 164 (357)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999998888744
|
Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. |
| >PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=80.66 E-value=2.2 Score=42.12 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=47.9
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeC---CCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLP---PPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~---Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
.++++.+...|..||.+||++|-+- .+.|...+.. -| ...+++|.+-+++.|+||.+=+-++.
T Consensus 12 ~~~~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~--------yd------Ws~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 12 DNDWNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQ--------YD------WSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp TSECHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB-----------------HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCc--------cC------cHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 4789999999999999999999763 1223322222 22 56899999999999999999999988
Q ss_pred CCCC
Q 014447 116 RTAE 119 (424)
Q Consensus 116 ~~~~ 119 (424)
|+.+
T Consensus 78 cGgN 81 (402)
T PF01373_consen 78 CGGN 81 (402)
T ss_dssp BSSS
T ss_pred CCCC
Confidence 8654
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 424 | ||||
| 1ava_A | 403 | Amy2BASI PROTEIN-Protein Complex From Barley Seed L | 1e-165 | ||
| 2qpu_A | 405 | Sugar Tongs Mutant S378p In Complex With Acarbose L | 1e-157 | ||
| 3bsg_A | 414 | Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant | 1e-156 | ||
| 2qps_A | 405 | "sugar Tongs" Mutant Y380a In Complex With Acarbose | 1e-156 | ||
| 1ht6_A | 405 | Crystal Structure At 1.5a Resolution Of The Barley | 1e-156 | ||
| 3bsh_A | 414 | Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant | 1e-155 | ||
| 1rp8_A | 405 | Crystal Structure Of Barley Alpha-Amylase Isozyme 1 | 1e-155 | ||
| 1gcy_A | 527 | High Resolution Crystal Structure Of Maltotetraose- | 3e-33 | ||
| 2amg_A | 418 | Structure Of Hydrolase (Glycosidase) Length = 418 | 3e-33 | ||
| 1jda_A | 429 | Maltotetraose-Forming Exo-Amylase Length = 429 | 8e-33 | ||
| 1qi3_A | 429 | Mutant (D193n) Maltotetraose-Forming Exo-Amylase In | 1e-32 | ||
| 1qi5_A | 429 | Mutant (D294n) Maltotetraose-Forming Exo-Amylase In | 1e-32 | ||
| 1qi4_A | 429 | Mutant (e219g) Maltotetraose-forming Exo-amylase In | 2e-32 | ||
| 1qpk_A | 418 | Mutant (D193g) Maltotetraose-Forming Exo-Amylase In | 2e-32 | ||
| 1mwo_A | 435 | Crystal Structure Analysis Of The Hyperthermostable | 1e-28 | ||
| 3qgv_A | 435 | Crystal Structure Of A Thermostable Amylase Variant | 5e-26 | ||
| 3bc9_A | 599 | Alpha-Amylase B In Complex With Acarbose Length = 5 | 3e-22 | ||
| 1ud2_A | 480 | Crystal Structure Of Calcium-Free Alpha-Amylase Fro | 4e-21 | ||
| 1ud3_A | 480 | Crystal Structure Of Amyk38 N289h Mutant Length = 4 | 4e-21 | ||
| 1w9x_A | 481 | Bacillus Halmapalus Alpha Amylase Length = 481 | 2e-20 | ||
| 2gjp_A | 485 | Structure Of Bacillus Halmapalus Alpha-Amylase, Cry | 2e-20 | ||
| 3bh4_A | 483 | High Resolution Crystal Structure Of Bacillus Amylo | 5e-20 | ||
| 1wp6_A | 485 | Crystal Structure Of Maltohexaose-producing Amylase | 3e-19 | ||
| 1e3x_A | 483 | Native Structure Of Chimaeric Amylase From B. Amylo | 3e-19 | ||
| 2die_A | 485 | Alkaline Alpha-Amylase Amyk From Bacillus Sp. Ksm-1 | 8e-19 | ||
| 1vjs_A | 483 | Structure Of Alpha-Amylase Precursor Length = 483 | 2e-18 | ||
| 1bli_A | 483 | Bacillus Licheniformis Alpha-Amylase Length = 483 | 1e-17 | ||
| 1ob0_A | 483 | Kinetic Stabilization Of Bacillus Licheniformis-Amy | 1e-17 | ||
| 1hvx_A | 515 | Bacillus Stearothermophilus Alpha-Amylase Length = | 1e-17 | ||
| 1lwh_A | 441 | Crystal Structure Of T. Maritima 4-Alpha-Glucanotra | 1e-12 | ||
| 1sma_A | 588 | Crystal Structure Of A Maltogenic Amylase Length = | 2e-11 | ||
| 1j0h_A | 588 | Crystal Structure Of Bacillus Stearothermophilus Ne | 2e-11 | ||
| 1j0j_A | 588 | Crystal Structure Of Neopullulanase E357q Complex W | 6e-11 | ||
| 1gvi_A | 588 | Thermus Maltogenic Amylase In Complex With Beta-Cd | 1e-10 | ||
| 2guy_A | 478 | Orthorhombic Crystal Structure (Space Group P21212) | 3e-09 | ||
| 1qho_A | 686 | Five-Domain Alpha-Amylase From Bacillus Stearotherm | 4e-09 | ||
| 1pj9_A | 686 | Bacillus Circulans Strain 251 Loop Mutant 183-195 L | 4e-09 | ||
| 1pez_A | 686 | Bacillus Circulans Strain 251 Mutant A230v Length = | 4e-09 | ||
| 2taa_A | 478 | Structure And Possible Catalytic Residues Of Taka-A | 4e-09 | ||
| 1bpl_B | 294 | Glycosyltransferase Length = 294 | 6e-09 | ||
| 1cdg_A | 686 | Nucleotide Sequence And X-Ray Structure Of Cyclodex | 7e-09 | ||
| 1tcm_A | 686 | Cyclodextrin Glycosyltransferase W616a Mutant From | 8e-09 | ||
| 1cgw_A | 686 | Site Directed Mutations Of The Active Site Residue | 8e-09 | ||
| 1cgx_A | 686 | Site Directed Mutations Of The Active Site Residue | 9e-09 | ||
| 1cgv_A | 686 | Site Directed Mutations Of The Active Site Residue | 1e-08 | ||
| 1dtu_A | 686 | Bacillus Circulans Strain 251 Cyclodextrin Glycosyl | 1e-08 | ||
| 1cgy_A | 686 | Site Directed Mutations Of The Active Site Residue | 1e-08 | ||
| 1ea9_C | 583 | Cyclomaltodextrinase Length = 583 | 1e-08 | ||
| 1kck_A | 686 | Bacillus Circulans Strain 251 Cyclodextrin Glycosyl | 1e-08 | ||
| 1cxl_A | 686 | Complex Between A Covalent Intermediate And Bacillu | 2e-08 | ||
| 1bpl_A | 189 | Glycosyltransferase Length = 189 | 2e-08 | ||
| 1wza_A | 488 | Crystal Structure Of Alpha-Amylase From H.Orenii Le | 2e-08 | ||
| 1ot2_A | 686 | Bacillus Circulans Strain 251 Cyclodextrin Glycosyl | 2e-08 | ||
| 1v3k_A | 686 | Crystal Structure Of F283y Mutant Cyclodextrin Glyc | 4e-08 | ||
| 1d7f_A | 686 | Crystal Structure Of Asparagine 233-Replaced Cyclod | 4e-08 | ||
| 1cyg_A | 680 | Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgt | 4e-08 | ||
| 1ot1_A | 686 | Bacillus Circulans Strain 251 Cyclodextrin Glycosyl | 5e-08 | ||
| 1v3j_A | 686 | Crystal Structure Of F283l Mutant Cyclodextrin Glyc | 5e-08 | ||
| 1pam_A | 686 | Cyclodextrin Glucanotransferase Length = 686 | 5e-08 | ||
| 1cxk_A | 686 | Complex Between A Maltononaose Substrate And Bacill | 6e-08 | ||
| 4cgt_A | 678 | Deletion Mutant Delta(145-150), F151d Of Cyclodextr | 6e-08 | ||
| 1kcl_A | 686 | Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl | 6e-08 | ||
| 1ukt_A | 686 | Crystal Structure Of Y100l Mutant Cyclodextrin Gluc | 2e-07 | ||
| 1eo5_A | 686 | Bacillus Circulans Strain 251 Cyclodextrin Glycosyl | 3e-07 | ||
| 1uks_A | 686 | Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN | 3e-07 | ||
| 1cgt_A | 684 | Structure Of Cyclodextrin Glycosyltransferase Refin | 8e-07 | ||
| 2wc7_A | 488 | Crystal Structure Of Nostoc Punctiforme Debranching | 9e-07 | ||
| 6cgt_A | 684 | Hoxa Complex Of Cyclodextrin Glycosyltransferase Mu | 1e-06 | ||
| 8cgt_A | 684 | Structure Of Cyclodextrin Glycosyltransferase Compl | 4e-06 | ||
| 1cgu_A | 684 | Catalytic Center Of Cyclodextrin Glycosyltransferas | 6e-06 | ||
| 3gbd_A | 558 | Crystal Structure Of The Isomaltulose Synthase Smua | 2e-05 | ||
| 1m53_A | 570 | Crystal Structure Of Isomaltulose Synthase (Pali) F | 4e-05 | ||
| 2aaa_A | 484 | Calcium Binding In Alpha-Amylases: An X-Ray Diffrac | 4e-05 | ||
| 1jf5_A | 585 | Crystal Structure Of Thermoactinomyces Vulgaris R-4 | 7e-05 | ||
| 3dc0_A | 422 | Crystal Structure Of Native Alpha-Amylase From Baci | 1e-04 | ||
| 1wzl_A | 585 | Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (T | 1e-04 | ||
| 4gin_A | 584 | Crystal Structure Of The Mutb R284c Mutant From Cry | 2e-04 | ||
| 1wzm_A | 585 | Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (t | 2e-04 | ||
| 4h2c_A | 557 | Trehalulose Synthase Mutb R284c Mutant Length = 557 | 2e-04 | ||
| 1bvz_A | 585 | Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vul | 2e-04 | ||
| 2pwg_A | 556 | Crystal Structure Of The Trehalulose Synthase Mutb | 2e-04 | ||
| 4gi6_A | 557 | Crystal Structure Of The Mutb F164l Mutant In Compl | 2e-04 | ||
| 1wzk_A | 585 | Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (T | 2e-04 | ||
| 2pwe_A | 556 | Crystal Structure Of The Mutb E254q Mutant In Compl | 2e-04 | ||
| 1zja_A | 557 | Crystal Structure Of The Trehalulose Synthase Mutb | 2e-04 | ||
| 1jf6_A | 585 | Crystal Structure Of Thermoactinomyces Vulgaris R-4 | 2e-04 | ||
| 3bmv_A | 683 | Cyclodextrin Glycosyl Transferase From Thermoanerob | 2e-04 | ||
| 1uok_A | 558 | Crystal Structure Of B. Cereus Oligo-1,6-Glucosidas | 2e-04 | ||
| 2z1k_A | 475 | Crystal Structure Of Ttha1563 From Thermus Thermoph | 3e-04 | ||
| 4aie_A | 549 | Structure Of Glucan-1,6-Alpha-Glucosidase From Lact | 4e-04 | ||
| 2wan_A | 921 | Pullulanase From Bacillus Acidopullulyticus Length | 5e-04 | ||
| 1jl8_A | 585 | Complex Of Alpha-Amylase Ii (Tva Ii) From Thermoact | 5e-04 | ||
| 2vnc_A | 718 | Crystal Structure Of Glycogen Debranching Enzyme Tr | 6e-04 | ||
| 1ua7_A | 422 | Crystal Structure Analysis Of Alpha-Amylase From Ba | 7e-04 | ||
| 1bag_A | 425 | Alpha-Amylase From Bacillus Subtilis Complexed With | 8e-04 | ||
| 1vfm_A | 585 | Crystal Structure Of Thermoactinomyces Vulgaris R-4 | 9e-04 |
| >pdb|1AVA|A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed Length = 403 | Back alignment and structure |
|
| >pdb|2QPU|A Chain A, Sugar Tongs Mutant S378p In Complex With Acarbose Length = 405 | Back alignment and structure |
|
| >pdb|3BSG|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant Length = 414 | Back alignment and structure |
|
| >pdb|2QPS|A Chain A, "sugar Tongs" Mutant Y380a In Complex With Acarbose Length = 405 | Back alignment and structure |
|
| >pdb|1HT6|A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha- Amylase Isozyme 1 Length = 405 | Back alignment and structure |
|
| >pdb|3BSH|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant Y105aY380A IN COMPLEX WITH INHIBITOR ACARBOSE Length = 414 | Back alignment and structure |
|
| >pdb|1RP8|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1) Inactive Mutant D180a In Complex With Maltoheptaose Length = 405 | Back alignment and structure |
|
| >pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming Exo-Amylase Length = 527 | Back alignment and structure |
|
| >pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase) Length = 418 | Back alignment and structure |
|
| >pdb|1JDA|A Chain A, Maltotetraose-Forming Exo-Amylase Length = 429 | Back alignment and structure |
|
| >pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In Complex With Maltotetraose Length = 429 | Back alignment and structure |
|
| >pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In Complex With Maltotetraose Length = 429 | Back alignment and structure |
|
| >pdb|1QI4|A Chain A, Mutant (e219g) Maltotetraose-forming Exo-amylase In Complex With Maltotetraose Length = 429 | Back alignment and structure |
|
| >pdb|1QPK|A Chain A, Mutant (D193g) Maltotetraose-Forming Exo-Amylase In Complex With Maltotetraose Length = 418 | Back alignment and structure |
|
| >pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable Pyrocoocus Woesei Alpha-Amylase Length = 435 | Back alignment and structure |
|
| >pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant Length = 435 | Back alignment and structure |
|
| >pdb|3BC9|A Chain A, Alpha-Amylase B In Complex With Acarbose Length = 599 | Back alignment and structure |
|
| >pdb|1UD2|A Chain A, Crystal Structure Of Calcium-Free Alpha-Amylase From Bacillus Sp. Strain Ksm-K38 (Amyk38) Length = 480 | Back alignment and structure |
|
| >pdb|1UD3|A Chain A, Crystal Structure Of Amyk38 N289h Mutant Length = 480 | Back alignment and structure |
|
| >pdb|1W9X|A Chain A, Bacillus Halmapalus Alpha Amylase Length = 481 | Back alignment and structure |
|
| >pdb|2GJP|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase, Crystallized With The Substrate Analogue Acarbose And Maltose Length = 485 | Back alignment and structure |
|
| >pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus Amyloliquefaciens Alpha-Amylase Length = 483 | Back alignment and structure |
|
| >pdb|1WP6|A Chain A, Crystal Structure Of Maltohexaose-producing Amylase From Alkalophilic Bacillus Sp.707. Length = 485 | Back alignment and structure |
|
| >pdb|1E3X|A Chain A, Native Structure Of Chimaeric Amylase From B. Amyloliquefaciens And B. Licheniformis At 1.92a Length = 483 | Back alignment and structure |
|
| >pdb|2DIE|A Chain A, Alkaline Alpha-Amylase Amyk From Bacillus Sp. Ksm-1378 Length = 485 | Back alignment and structure |
|
| >pdb|1VJS|A Chain A, Structure Of Alpha-Amylase Precursor Length = 483 | Back alignment and structure |
|
| >pdb|1BLI|A Chain A, Bacillus Licheniformis Alpha-Amylase Length = 483 | Back alignment and structure |
|
| >pdb|1OB0|A Chain A, Kinetic Stabilization Of Bacillus Licheniformis-Amylase Through Introduction Of Hydrophobic Residues At The Surface Length = 483 | Back alignment and structure |
|
| >pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase Length = 515 | Back alignment and structure |
|
| >pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-Glucanotransferase Length = 441 | Back alignment and structure |
|
| >pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase Length = 588 | Back alignment and structure |
|
| >pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Neopullulanase Length = 588 | Back alignment and structure |
|
| >pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With Maltotetraose Length = 588 | Back alignment and structure |
|
| >pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd Length = 588 | Back alignment and structure |
|
| >pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of Aspergillus Niger Alpha-Amylase At 1.6 A Resolution Length = 478 | Back alignment and structure |
|
| >pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus Stearothermophilus, MaltoseACARBOSE COMPLEX Length = 686 | Back alignment and structure |
|
| >pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195 Length = 686 | Back alignment and structure |
|
| >pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v Length = 686 | Back alignment and structure |
|
| >pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase A Length = 478 | Back alignment and structure |
|
| >pdb|1BPL|B Chain B, Glycosyltransferase Length = 294 | Back alignment and structure |
|
| >pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 In A Maltose-Dependent Crystal Form Length = 686 | Back alignment and structure |
|
| >pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From Bacillus Circulans Strain 251 Length = 686 | Back alignment and structure |
|
| >pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686 | Back alignment and structure |
|
| >pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686 | Back alignment and structure |
|
| >pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686 | Back alignment and structure |
|
| >pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN Hexasaccharide Inhibitor Length = 686 | Back alignment and structure |
|
| >pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686 | Back alignment and structure |
|
| >pdb|1EA9|C Chain C, Cyclomaltodextrinase Length = 583 | Back alignment and structure |
|
| >pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl Transferase Mutant N193g Length = 686 | Back alignment and structure |
|
| >pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus Circulans Strain 251 Cgtase E257q Length = 686 | Back alignment and structure |
|
| >pdb|1BPL|A Chain A, Glycosyltransferase Length = 189 | Back alignment and structure |
|
| >pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii Length = 488 | Back alignment and structure |
|
| >pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl Transferase Mutant D135n Length = 686 | Back alignment and structure |
|
| >pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin Glycosyltransferase Length = 686 | Back alignment and structure |
|
| >pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin Glucanotransferase From Alkalophilic Bacillus Sp. 1011 Determined At 1.9 A Resolution Length = 686 | Back alignment and structure |
|
| >pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase) Length = 680 | Back alignment and structure |
|
| >pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl Transferase Mutant D135a Length = 686 | Back alignment and structure |
|
| >pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin Glycosyltransferase Length = 686 | Back alignment and structure |
|
| >pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase Length = 686 | Back alignment and structure |
|
| >pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus Circulans Strain 251 Cgtase E257qD229N Length = 686 | Back alignment and structure |
|
| >pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin Glycosyltransferase Length = 678 | Back alignment and structure |
|
| >pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl Transferase Mutant G179l Length = 686 | Back alignment and structure |
|
| >pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin Glucanotransferase Compexed With An Acarbose Length = 686 | Back alignment and structure |
|
| >pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyltransferase In Complex With Maltoheptaose Length = 686 | Back alignment and structure |
|
| >pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN Glucanotransferase Complexed With A Pseudo-Maltotetraose Derived From Acarbose Length = 686 | Back alignment and structure |
|
| >pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At 2.0 Angstroms Resolution Length = 684 | Back alignment and structure |
|
| >pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching Enzyme( Npde)(Acarbose Soaked) Length = 488 | Back alignment and structure |
|
| >pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant Length = 684 | Back alignment and structure |
|
| >pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed With A Thio-Maltohexaose Length = 684 | Back alignment and structure |
|
| >pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase Derived From X-Ray Structure Analysis Combined With Site- Directed Mutagenesis Length = 684 | Back alignment and structure |
|
| >pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From Protaminobacter Rubrum Length = 558 | Back alignment and structure |
|
| >pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From Klebsiella Sp. Lx3 Length = 570 | Back alignment and structure |
|
| >pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction Study At 2.1 Angstroms Resolution Of Two Enzymes From Aspergillus Length = 484 | Back alignment and structure |
|
| >pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha- Amylase 2 Mutant F286a Length = 585 | Back alignment and structure |
|
| >pdb|3DC0|A Chain A, Crystal Structure Of Native Alpha-Amylase From Bacillus Sp. Kr-8104 Length = 422 | Back alignment and structure |
|
| >pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii) Mutatnt R469l Length = 585 | Back alignment and structure |
|
| >pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals Soaked With The Inhibitor Deoxynojirimycin Length = 584 | Back alignment and structure |
|
| >pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii) Mutatnt R469k Length = 585 | Back alignment and structure |
|
| >pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant Length = 557 | Back alignment and structure |
|
| >pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris R- 47 Length = 585 | Back alignment and structure |
|
| >pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From Pseudomonas Mesoacidophila Mx-45 Complexed To The Inhibitor Castanospermine Length = 556 | Back alignment and structure |
|
| >pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With Glucose Length = 557 | Back alignment and structure |
|
| >pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii) Mutatnt D465n Length = 585 | Back alignment and structure |
|
| >pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With The Substrate Sucrose Length = 556 | Back alignment and structure |
|
| >pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From Pseudomonas Mesoacidophila Mx-45 (Triclinic Form) Length = 557 | Back alignment and structure |
|
| >pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha- Amylase Mutant F286y Length = 585 | Back alignment and structure |
|
| >pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p Length = 683 | Back alignment and structure |
|
| >pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase Length = 558 | Back alignment and structure |
|
| >pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus Hb8 Length = 475 | Back alignment and structure |
|
| >pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From Lactobacillus Acidophilus Ncfm Length = 549 | Back alignment and structure |
|
| >pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus Length = 921 | Back alignment and structure |
|
| >pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin Based On A Co- Crystallization With Methyl Beta-Cyclodextrin Length = 585 | Back alignment and structure |
|
| >pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From Sulfolobus Solfataricus Length = 718 | Back alignment and structure |
|
| >pdb|1UA7|A Chain A, Crystal Structure Analysis Of Alpha-Amylase From Bacillus Subtilis Complexed With Acarbose Length = 422 | Back alignment and structure |
|
| >pdb|1BAG|A Chain A, Alpha-Amylase From Bacillus Subtilis Complexed With Maltopentaose Length = 425 | Back alignment and structure |
|
| >pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha- Amylase 2ALPHA-Cyclodextrin Complex Length = 585 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* Length = 405 | Back alignment and structure |
|---|
Score = 492 bits (1268), Expect = e-174
Identities = 251/403 (62%), Positives = 306/403 (75%), Gaps = 3/403 (0%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+LFQGFNWES ++GGWYN + + D++ AG+THVWLPPPS SV+ +GYMPGRLYD+DA
Sbjct: 3 VLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDA 62
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
SKYG+ A+LKSLI A KG++ +AD+VINHR A+ KD RGIYCIFEGGTSD RLDWGP
Sbjct: 63 SKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPH 122
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
ICR D +YSDG N DTG DF APDIDHLN RVQ+EL +W+ WLK+++GFD WR DF
Sbjct: 123 MICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDFA 182
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGG---A 261
+GY+P + KVY++ TSP AV E WD+++ G DGKP+ +QD HR L +WV GG A
Sbjct: 183 RGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAASA 242
Query: 262 VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP 321
FDFTTKGIL AAV+GELWRL D GK PG +G P AVTF+DNHDTGSTQ +WPFP
Sbjct: 243 GMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFP 302
Query: 322 SDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDAD 381
SDKVM GYAYILTHPG PCIFYDHFF+WG K+ I+ L A+R RNGI S + IL + D
Sbjct: 303 SDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNGITATSALKILMHEGD 362
Query: 382 VYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEKN 424
Y+A I +V++KIG + D+G +IP+ F +A G DYAVWEKN
Sbjct: 363 AYVAEIDGKVVVKIGSRYDVGAVIPAGFVTSAHGNDYAVWEKN 405
|
| >1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* Length = 527 | Back alignment and structure |
|---|
Score = 325 bits (835), Expect = e-107
Identities = 114/423 (26%), Positives = 177/423 (41%), Gaps = 46/423 (10%)
Query: 26 LFQGFNWESSNKAGG-WYNSLKNSIPDLSNAGITHVWLPPP----------SQSVAPQGY 74
+ QGF+W +A WYN L+ ++ G + +W+P P S+S +GY
Sbjct: 19 ILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGY 78
Query: 75 MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGT 134
++ + +YGS A L+ A G+K L D+V NH D +G
Sbjct: 79 FW-HDFNKN-GRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFW 136
Query: 135 SDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA-PDIDHLNPRVQKELSDWMNWLKTE 193
+D D G + + D G+ F D++ +P+V D L+++
Sbjct: 137 RNDCADPG------------NYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQ 184
Query: 194 IGFDGWRFDFVKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALK 252
G G+RFDFV+GYAP +M +++ + F VGE W S P+ N + +K
Sbjct: 185 YGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNW-DWRNTASWQQIIK 243
Query: 253 DWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTG 312
DW A FDF K +Q + + N P + AVTF+DNHDTG
Sbjct: 244 DWSDRAK--CPVFDFALKERMQNGSIADWKHGLNGNPDPR-----WREVAVTFVDNHDTG 296
Query: 313 STQRL------WPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNG 366
+ W + YAYILT PGTP +++DH +DWG + I +L VR G
Sbjct: 297 YSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAG 356
Query: 367 INTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSD-----FKVAADGTDYAVW 421
+ S ++ + + + G + + + D+GN V A VW
Sbjct: 357 VRADSAISFHSGYSGLVATVSGSQQTLVVALNSDLGNPGQVASGSFSEAVNASNGQVRVW 416
Query: 422 EKN 424
Sbjct: 417 RSG 419
|
| >3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A Length = 599 | Back alignment and structure |
|---|
Score = 302 bits (775), Expect = 2e-97
Identities = 109/455 (23%), Positives = 165/455 (36%), Gaps = 81/455 (17%)
Query: 25 LLFQGFNWESSNKA--------GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ---G 73
+ Q F WE + +N L P+L+ AG T VWLPP ++ +A G
Sbjct: 124 TILQAFYWEMNTGEYATEHPEEANLWNLLAERAPELAEAGFTAVWLPPANKGMAGIHDVG 183
Query: 74 YMPGRLYDLD--------ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA------- 118
Y L+DL +KYG++ +L++ I A IK D V+NHR
Sbjct: 184 YGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETV 243
Query: 119 ----ERKDGRGIYCI------FEG-----------GTSDDRLDWGPSFICRGDKEYSDGQ 157
+D G Y F G G D DW G + +
Sbjct: 244 LLDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFDEKS 303
Query: 158 --GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY 215
+ ED+ D+D+ N VQ ++ DW W+ I FDG+R D VK +
Sbjct: 304 WDWTYNWDEDYLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAVKHIDYRFIDKW 363
Query: 216 MENTSPD-----FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGA-VAAFDFTT 269
M F VGE W LK ++ G + FDF
Sbjct: 364 MSAVQNSSNRDVFFVGEAW---------------VEDVDDLKGFLDTVGNPDLRVFDFPL 408
Query: 270 KGILQAAVQGE-LWRLKD-SNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP-SDKVM 326
+ + G + L++ PG+ AVTF+DNHDT + + +
Sbjct: 409 RSFFVDMLNGAYMADLRNAGLVNSPGY----ENRAVTFVDNHDTDRDEGSYTVSIYSRKY 464
Query: 327 LGYAYILTH-PGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIA 385
YAYILT G P +++ ++ W +KE + KL R + +DAD+Y
Sbjct: 465 QAYAYILTRAEGVPTVYWKDYYIWEMKEGLDKLLTARRYYAYG--PGYEVDNNDADIYSY 522
Query: 386 A-IGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYA 419
G + G + I + + +
Sbjct: 523 VRSGFPDVAGDGLVLMISDGTSGNVAGKWINSRQP 557
|
| >1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A* Length = 435 | Back alignment and structure |
|---|
Score = 282 bits (723), Expect = 2e-91
Identities = 107/386 (27%), Positives = 161/386 (41%), Gaps = 48/386 (12%)
Query: 15 AIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAP--- 71
A +L ++ Q F W+ G W++ +++ IP+ AGI+ +WLPPPS+ ++
Sbjct: 1 AKYLELEEGGVIMQAFYWDVPGG-GIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYS 59
Query: 72 QGYMPGRLYDLD--------ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDG 123
GY P +DL +++GS+ +L LIQ GIK +AD+VINHR +
Sbjct: 60 MGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEW 119
Query: 124 RGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKEL 183
+ T ++ G D ++ D F PDI H Q L
Sbjct: 120 NP-FVGDYTWTDFSKVASGKYTANYLDFHPNELHCCD--EGTFGGFPDICHHKEWDQYWL 176
Query: 184 ---SDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
++ IGFDGWRFD+VKGY + + ++ +AVGE W
Sbjct: 177 WKSNESYAAYLRSIGFDGWRFDYVKGYGAWVVRDWLN-WWGGWAVGEYW----------- 224
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILP 299
D + AL W +G V FDF + A + L + + P
Sbjct: 225 ----DTNVDALLSWAYESGAKV--FDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDP 278
Query: 300 QNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLA 359
AVTF+ NHDT +P YA+ILT+ G P IFY F +W K+ + L
Sbjct: 279 FKAVTFVANHDTDIIWNKYP--------AYAFILTYEGQPVIFYRDFEEWLNKDKLINLI 330
Query: 360 AVRNRNGINTASRVNILASDADVYIA 385
+ + + I+ D D I
Sbjct: 331 WIHDHLAGGS---TTIVYYDNDELIF 353
|
| >1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A Length = 480 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 1e-82
Identities = 98/403 (24%), Positives = 154/403 (38%), Gaps = 81/403 (20%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPP--SQSVAPQGYMPGRLYDL 82
+ Q + W G +N L + LS+AGIT +W+PP S A GY LYDL
Sbjct: 6 TMMQYYEWHL-ENDGQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDL 64
Query: 83 D--------ASKYGSQADLKSLIQAFRQKGIKCLADMVINHR----------------TA 118
+KYG++A L+ I + + I D+V+NH+ T
Sbjct: 65 GEFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTN 124
Query: 119 ERKDGRGIYCIF----------EGGTSDDRLDWGP-------------SFICRGDKEYSD 155
+D G Y I SD + W + ++
Sbjct: 125 RWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNW 184
Query: 156 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY 215
++ D+ +ID +P VQ EL DW +W E+ DG+R D +K T +
Sbjct: 185 RVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWYTSDW 244
Query: 216 MENTSPD-----FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTK 270
+ + + F VGE W GAL+ ++ ++ FD
Sbjct: 245 VRHQRNEADQDLFVVGEYW---------------KDDVGALEFYLDEMNWEMSLFDVPLN 289
Query: 271 G-ILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVM-LG 328
+A+ QG + +++ + P +AVTF+DNHDT + L + +D L
Sbjct: 290 YNFYRASQQGGSYDMRNIL--RGSLVEAHPMHAVTFVDNHDTQPGESLESWVADWFKPLA 347
Query: 329 YAYILTH-PGTPCIFYDHFF------DWGLKEAISKLAAVRNR 364
YA ILT G P +FY ++ K+ I +L R
Sbjct: 348 YATILTREGGYPNVFYGDYYGIPNDNISAKKDMIDELLDARQN 390
|
| >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A Length = 483 | Back alignment and structure |
|---|
Score = 257 bits (657), Expect = 3e-81
Identities = 111/468 (23%), Positives = 169/468 (36%), Gaps = 97/468 (20%)
Query: 24 ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRLYD 81
L Q F W + G + L+N LS+ GIT VW+PP + ++ GY P LYD
Sbjct: 3 GTLMQYFEWYT-PNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYD 61
Query: 82 LD--------ASKYGSQADLKSLIQAFRQKGIKCLADMVINHR----------------- 116
L +KYG++++L+ I + + ++ D+V+NH+
Sbjct: 62 LGEFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPA 121
Query: 117 ---------------TAERKDGRG--------IYCIFEGGTSDDRLDWGPSFICRGDKEY 153
T R GRG + F+G D+ F RG+ +
Sbjct: 122 NRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGKA 181
Query: 154 SDGQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT 212
D + + + G D+ D+D+ +P V E W W E+ DG+R D K S
Sbjct: 182 WDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSFL 241
Query: 213 KVYMENT-----SPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF 267
+ +++ F V E W + G L++++ + FD
Sbjct: 242 RDWVQAVRQATGKEMFTVAEYW---------------QNNAGKLENYLNKTSFNQSVFDV 286
Query: 268 TTKGILQAAVQGE----LWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLW-PFPS 322
LQAA + RL D + P+ AVTF++NHDT Q L +
Sbjct: 287 PLHFNLQAASSQGGGYDMRRLLDGT-----VVSRHPEKAVTFVENHDTQPGQSLESTVQT 341
Query: 323 DKVMLGYAYILT-HPGTPCIFYDHFFDWG---------LKEAISKLAAVRNRNGINTASR 372
L YA+ILT G P +FY + LK+ I + R
Sbjct: 342 WFKPLAYAFILTRESGYPQVFYGDMYGTKGTSPKEIPSLKDNIEPILKARKEYAYGP--- 398
Query: 373 VNILASDADVYIAA-IGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYA 419
+ DV GD K G I + P K G A
Sbjct: 399 QHDYIDHPDVIGWTREGDSSAAKSGLAALITDG-PGGSKRMYAGLKNA 445
|
| >1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A* Length = 485 | Back alignment and structure |
|---|
Score = 255 bits (652), Expect = 2e-80
Identities = 95/427 (22%), Positives = 154/427 (36%), Gaps = 87/427 (20%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRLYDL 82
+ Q F W G +N L + +L + GIT VW+PP + + GY LYDL
Sbjct: 8 TMMQYFEWYL-PNDGNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDL 66
Query: 83 D--------ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE--------------- 119
+KYG+++ L++ + + + GI+ D+V+NH+
Sbjct: 67 GEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNN 126
Query: 120 RKDGRGIYCIFEGGTSDD-------------------RLDWGPSFICRGDKEYSDGQGND 160
R E T D +DW S G G
Sbjct: 127 RNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKA 186
Query: 161 --------DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT 212
+ D+ DID +P V EL +W W +G DG+R D VK S T
Sbjct: 187 WDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKYSFT 246
Query: 213 KVYM----ENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF 267
+ ++ T + FAV E W GA+++++Q + FD
Sbjct: 247 RDWINHVRSATGKNMFAVAEFW---------------KNDLGAIENYLQKTNWNHSVFDV 291
Query: 268 TTKGIL-QAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVM 326
L A+ G + +++ + P +AVTF+DNHD+ + L F +
Sbjct: 292 PLHYNLYNASKSGGNYDMRNIFNG--TVVQRHPSHAVTFVDNHDSQPEEALESFVEEWFK 349
Query: 327 -LGYAYILTH-PGTPCIFYDHFFDW------GLKEAISKLAAVRNRNGINTASRVNILAS 378
L YA LT G P +FY ++ ++ I + R + + N
Sbjct: 350 PLAYALTLTREQGYPSVFYGDYYGIPTHGVPAMRSKIDPILEARQKYA---YGKQNDYLD 406
Query: 379 DADVYIA 385
++
Sbjct: 407 HHNIIGW 413
|
| >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 Length = 515 | Back alignment and structure |
|---|
Score = 215 bits (550), Expect = 5e-65
Identities = 103/425 (24%), Positives = 152/425 (35%), Gaps = 86/425 (20%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPP--SQSVAPQGYMPGRLYDL 82
+ Q F W + G + + N +LS+ GIT +WLPP S + GY LYDL
Sbjct: 7 TMMQYFEWYLPDD-GTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDL 65
Query: 83 D--------ASKYGSQADLKSLIQAFRQKGIKCLADMVINHR------------------ 116
+KYG++A IQA G++ AD+V +H+
Sbjct: 66 GEFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSD 125
Query: 117 --------------TAERKDGRG--------IYCIFEGGTSDDRLDWGPSFICRGDKEYS 154
T GRG + F+G D+ + RG +
Sbjct: 126 RNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGIGKAW 185
Query: 155 DGQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS--- 210
D + + + G D+ D+D +P V EL W W DG+R D VK S
Sbjct: 186 DWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIKFSFFP 245
Query: 211 --ITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFT 268
++ V + P F VGE W L +++ G ++ FD
Sbjct: 246 DWLSYVRSQTGKPLFTVGEYW---------------SYDINKLHNYIMKTNGTMSLFDAP 290
Query: 269 TK-GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLW-PFPSDKVM 326
A+ G + ++ + P AVTF+DNHDT Q L
Sbjct: 291 LHNKFYTASKSGGTFDMRTLMTN--TLMKDQPTLAVTFVDNHDTEPGQALQSWVDPWFKP 348
Query: 327 LGYAYILT-HPGTPCIFYDHFFDWG------LKEAISKLAAVRNRNGINTASRVNILASD 379
L YA+ILT G PC+FY ++ LK I L R T +
Sbjct: 349 LAYAFILTRQEGYPCVFYGDYYGIPQYNIPSLKSKIDPLLIARRDYAYGT---QHDYLDH 405
Query: 380 ADVYI 384
+D+
Sbjct: 406 SDIIG 410
|
| >1hx0_A Alpha amylase (PPA); inhibitor, carbohydrate, pancreas, hydrolase; HET: GLC AC1 BGC MAL; 1.38A {Sus scrofa} SCOP: b.71.1.1 c.1.8.1 PDB: 1wo2_A* 1ua3_A* 1kxq_A 1kxt_A 1kxv_A 1jfh_A* 1vah_A* 1ppi_A* 3l2m_A* 3l2l_A* 1dhk_A* 1ose_A* 1pig_A* 1pif_A* 1bvn_P 3oli_A* 3old_A* 3olg_A* 3ole_A* 3ij8_A* ... Length = 496 | Back alignment and structure |
|---|
Score = 148 bits (373), Expect = 7e-40
Identities = 74/427 (17%), Positives = 136/427 (31%), Gaps = 55/427 (12%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAP--------QGYMPG 77
+ F W W + L G V + PP++++ + Y P
Sbjct: 13 IVHLFEWR-------WVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQP- 64
Query: 78 RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDD 137
Y L ++ G++ + + ++ G++ D VINH +
Sbjct: 65 VSYKLC-TRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGN 123
Query: 138 RL----DWGPSFICRGDKEYSDGQGND------DTGEDFQPAPDIDHLNPRVQKELSDWM 187
R + G + + G D+ V+ ++D++
Sbjct: 124 REFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYL 183
Query: 188 NWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGH 247
N L +IG G+R D K P K ++ S + D
Sbjct: 184 NKL-IDIGVAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQE----VIDLG 238
Query: 248 RGALKDWVQAAGGAVAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFI 306
A+K G V F + K G + GE + G+ GF+ A+ F+
Sbjct: 239 GEAIKSSEYFGNGRVTEFKYGAKLGTVVRKWSGEKMSYLKNWGEGWGFMP--SDRALVFV 296
Query: 307 DNHDT------GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIFYDHFFDWGLKEAISKLA 359
DNHD G + L + + + ++L HP G + + +
Sbjct: 297 DNHDNQRGHGAGGSSILTFWDARLYKIAVGFMLAHPYGFTRVMSSYRWARNFVNGEDVND 356
Query: 360 AV--RNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTD 417
+ N NG+ +N + + ++ R +I N++ F+ DG
Sbjct: 357 WIGPPNNNGVIKEVTINADTTCGNDWVCEHRWR---------EIRNMV--WFRNVVDGQP 405
Query: 418 YAVWEKN 424
+A W N
Sbjct: 406 FANWWDN 412
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* Length = 844 | Back alignment and structure |
|---|
Score = 136 bits (342), Expect = 1e-34
Identities = 57/378 (15%), Positives = 110/378 (29%), Gaps = 96/378 (25%)
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-----GRGIYCIFEGGTSDDRL 139
+ + L+ I AF +K + N + + D G +Y TS
Sbjct: 105 TAEKNTNWLRQTISAF----VKTQSA--WNSDSEKPFDDHLQKGALLYSNNSKLTSQANS 158
Query: 140 DW-----GPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL---- 190
++ P+ G K+ G +F A D+D+ NP VQ E +W+++L
Sbjct: 159 NYRILNRTPTNQ-TGKKDPRYTADRTIGGYEFLLANDVDNSNPVVQAEQLNWLHFLMNFG 217
Query: 191 -----KTEIGFDGWRFDFVKGYAPSITKVYME-------------NTSPDFAVGEKWDSL 232
+ FD R D V + ++ + + ++ E W
Sbjct: 218 NIYANDPDANFDSIRVDAVDNVDADLLQIAGDYLKAAKGIHKNDKAANDHLSILEAWS-- 275
Query: 233 SYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPP 292
D + + + + ++ + A + + + L D N +
Sbjct: 276 --YNDTPYLHDDGDNMINMDNRLRLSLLYSLAKPLNQRSGMNPLITNSLVNRTDDNAETA 333
Query: 293 GFIGILPQNAVTFIDNHDTGSTQRL------WPFPS------------------------ 322
+ +FI HD+ + P+
Sbjct: 334 ------AVPSYSFIRAHDSEVQDLIRDIIKAEINPNVVGYSFTMEEIKKAFEIYNKDLLA 387
Query: 323 -------DKVMLGYAYILTH-PGTPCIFYDHFFDWG---------LKEAISKLAAVRNRN 365
L YA +LT+ P ++Y F EAI L R +
Sbjct: 388 TEKKYTHYNTALSYALLLTNKSSVPRVYYGDMFTDDGQYMAHKTINYEAIETLLKARIKY 447
Query: 366 GINTASRVNILASDADVY 383
+ N ++++
Sbjct: 448 VSGGQAMRNQQVGNSEII 465
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* Length = 844 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 4e-25
Identities = 45/219 (20%), Positives = 71/219 (32%), Gaps = 49/219 (22%)
Query: 24 ALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS---------VAP 71
++F+GF+ ++ K + ++ + G+T + P S V
Sbjct: 611 RVMFEGFSNFQAFATKKEEYTNVVIAKNVDKFAEWGVTDFEMAPQYVSSTDGSFLDSVIQ 670
Query: 72 QGYMPGRLYDLDAS---KYGSQADLKSLIQAFRQKGIKCLADMVINHR---------TAE 119
GY YDL S KYG+ DL I+A KGIK +AD V + TA
Sbjct: 671 NGYAFTDRYDLGISKPNKYGTADDLVKAIKALHSKGIKVMADWVPDQMYALPEKEVVTAT 730
Query: 120 RKDGRGIY------------CIFEGGTSDDRLDWGPSFICRGDKEYSD--GQGNDDTGED 165
R D G + D + +G +F+ +Y + + TG
Sbjct: 731 RVDKYGTPVAGSQIKNTLYVVDGKSSGKDQQAKYGGAFLEELQAKYPELFARKQISTGVP 790
Query: 166 FQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
P+ I W G +V
Sbjct: 791 MDPSVKIK-----------QWSAKYFNGTNILGRGAGYV 818
|
| >1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... Length = 686 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-31
Identities = 75/389 (19%), Positives = 128/389 (32%), Gaps = 90/389 (23%)
Query: 52 LSNAGITHVWLPPPSQSVAPQ------------GYMPGRLYDLDASKYGSQADLKSLIQA 99
L+ G+T +W+ P +++ GY + YG+ AD ++LI A
Sbjct: 66 LTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTN-PAYGTIADFQNLIAA 124
Query: 100 FRQKGIKCLADMVINH---RTAERKDGRGIYCIFEGGT--SDDRLDWGPSFICRGDKEYS 154
K IK + D NH ++++ +++ GT D F G ++S
Sbjct: 125 AHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFS 184
Query: 155 DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD--------FVKG 206
+ ++ D++H N V L D + ++G DG R + + K
Sbjct: 185 T--TENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMNAVKHMPFGWQKS 241
Query: 207 YAPSITKVYMENTSPDFAVGEKWD-SLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAF 265
+ ++ P F G+ + P+ AN+ G +
Sbjct: 242 FMAAVNNYK-----PVFTFGQWFLGVNEVSPENHKFANESGM---------------SLL 281
Query: 266 DFTTKGILQAAVQGELWRLKDSNGKPPGFIGIL---------PQNAVTFIDNHDTGSTQR 316
DF ++ + + G +L + VTFIDNHD R
Sbjct: 282 DFRFAQKVRQVFRDNTDNMY-------GLKAMLEGSAADYAQVDDQVTFIDNHDME---R 331
Query: 317 LWPFPSD--KVMLGYAYILTHPGTPCIFY----------DHF----FDWG-----LKEAI 355
++ K+ A+ LT G P I+Y D + I
Sbjct: 332 FHASNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSGGTDPDNRARIPSFSTSTTAYQVI 391
Query: 356 SKLAAVRNRNGINTASRVNILASDADVYI 384
KLA +R N + DV I
Sbjct: 392 QKLAPLRKCNPAIAYGSTQERWINNDVLI 420
|
| >1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 Length = 680 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 1e-30
Identities = 72/383 (18%), Positives = 121/383 (31%), Gaps = 79/383 (20%)
Query: 52 LSNAGITHVWLPPPSQSVAPQ-----------GYMPGRLYDLDASKYGSQADLKSLIQAF 100
L++ G+T +W+ P ++V GY + +G+ +D + L+ A
Sbjct: 63 LTDMGVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPN-PFFGTLSDFQRLVDAA 121
Query: 101 RQKGIKCLADMVINH---RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQ 157
KGIK + D NH + +++ GT + + +
Sbjct: 122 HAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDANMYFHHNGGTTFSS 181
Query: 158 GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD--------FVKGYAP 209
D + D++H NP + + L D + ++G DG R D + K
Sbjct: 182 LEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMW-IDMGIDGIRMDAVKHMPFGWQKSLMD 240
Query: 210 SITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFT- 268
I P F GE + + N + + DF
Sbjct: 241 EIDNYR-----PVFTFGEWFL----SENEVDANNHYFANESGM----------SLLDFRF 281
Query: 269 TKGILQAAVQGELW------RLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS 322
+ + Q ++D+ + VTFIDNHD R
Sbjct: 282 GQKLRQVLRNNSDNWYGFNQMIQDTASAYDE-----VLDQVTFIDNHDMD---RFMIDGG 333
Query: 323 D--KVMLGYAYILTHPGTPCIFY----------DH----FFDWG-----LKEAISKLAAV 361
D KV + A +LT G P I+Y D + I KL+++
Sbjct: 334 DPRKVDMALAVLLTSRGVPNIYYGTEQYMTGNGDPNNRKMMSSFNKNTRAYQVIQKLSSL 393
Query: 362 RNRNGINTASRVNILASDADVYI 384
R N + DVY+
Sbjct: 394 RRNNPALAYGDTEQRWINGDVYV 416
|
| >1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A* Length = 448 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 4e-30
Identities = 66/346 (19%), Positives = 111/346 (32%), Gaps = 55/346 (15%)
Query: 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV---APQGYMPGR 78
+P F W W + + L G V + PP++ +
Sbjct: 1 TPTTFVHLFEWN-------WQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPV 53
Query: 79 LYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDR 138
Y+L S+ G++A ++ G+ D +INH A G G S
Sbjct: 54 SYELQ-SRGGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTG-------TAGNSFGN 105
Query: 139 LDWG--------PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL 190
+ S +D + D+D + VQ ++ ++N L
Sbjct: 106 KSFPIYSPQDFHESCTINNSDYGND--RYRVQNCELVGLADLDTASNYVQNTIAAYINDL 163
Query: 191 KTEIGFDGWRFDFVKGYAPS-ITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRG 249
IG G+RFD K A S I + + E D
Sbjct: 164 -QAIGVKGFRFDASKHVAASDIQSLMAKVNGSPVVFQEVI---------------DQGGE 207
Query: 250 ALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNH 309
A+ + G V F ++T+ L + + G+ GF+ +AV F+DNH
Sbjct: 208 AVGASEYLSTGLVTEFKYSTE--LGNTFRNGSLAWLSNFGEGWGFMP--SSSAVVFVDNH 263
Query: 310 D-----TGSTQRLWPFPSDKVMLGYAYILTHP-GTPCIFYDHFFDW 349
D G+ + L ++L +P G P + + F
Sbjct: 264 DNQRGHGGAGNVITFEDGRLYDLANVFMLAYPYGYPKVMSSYDFHG 309
|
| >1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A Length = 422 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 5e-30
Identities = 70/395 (17%), Positives = 123/395 (31%), Gaps = 80/395 (20%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAP-----------QGYMPGRLYDLDASKY 87
+N+LK+++ D+ +AG T + P +Q Y P +
Sbjct: 13 NWSFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGN-RYL 71
Query: 88 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFIC 147
G++ + K + A + GIK + D VINH T + S++
Sbjct: 72 GTEQEFKEMCAAAEEYGIKVIVDAVINHTTFD-----------YAAISNEVKSIPNWTHG 120
Query: 148 RGD-KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206
K +SD D T D + N +VQ L ++ G DG+RFD K
Sbjct: 121 NTQIKNWSD--RWDVTQNSLLGLYDWNTQNTQVQSYLKRFLERAL-NDGADGFRFDAAKH 177
Query: 207 YAPSITKVY-------MENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAG 259
Y + NTS +F GE + A +
Sbjct: 178 IELPDDGSYGSQFWPNITNTSAEFQYGEILQ----DSASRDAAYAN-------------Y 220
Query: 260 GAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILP-QNAVTFIDNHDT--GSTQR 316
V A ++ +++A++ + + + + VT++++HDT +
Sbjct: 221 MDVTASNYGHS--IRSALKNRNLGVSN----ISHYASDVSADKLVTWVESHDTYANDDEE 274
Query: 317 LWPFPSDKVMLGYAYILTHP-GTPCIFYDHFFD---------------WGLKEAISKLAA 360
D + LG+A I + TP F + A
Sbjct: 275 STWMSDDDIRLGWAVIASRSGSTPLFFSRPEGGGNGVRFPGKSQIGDRGSALFEDQAITA 334
Query: 361 -VRNRNGINTASRVNILASDADVYIAAI--GDRVI 392
R N + + + I G +
Sbjct: 335 VNRFHNVMAGQP-EELSNPQGNNQIFMNQRGSHGV 368
|
| >3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A Length = 683 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 1e-29
Identities = 73/392 (18%), Positives = 116/392 (29%), Gaps = 96/392 (24%)
Query: 52 LSNAGITHVWLPPPSQSVAPQ-------------GYMPGRLYDLDASKYGSQADLKSLIQ 98
L+ G+T +W+P P +++ GY + +GS D ++LI
Sbjct: 66 LTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTN-PYFGSFTDFQNLIN 124
Query: 99 AFRQKGIKCLADMVINH--------RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD 150
IK + D NH T GG ++D + + G
Sbjct: 125 TAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFHHY---GG 181
Query: 151 KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD-------- 202
++S D + D++ N + L + ++G DG R D
Sbjct: 182 TDFSS--YEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVW-LDMGIDGIRLDAVKHMPFG 238
Query: 203 FVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAV 262
+ K + SI P F GE + + G +
Sbjct: 239 WQKNFMDSILSYR-----PVFTFGEWFLG-------------TNEIDVNNTYFANESG-M 279
Query: 263 AAFDF-TTKGILQAAVQGELW------RLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQ 315
+ DF ++ + Q ++ + + VTFIDNHD
Sbjct: 280 SLLDFRFSQKVRQVFRDNTDTMYGLDSMIQSTASDYNF-----INDMVTFIDNHDMD--- 331
Query: 316 RLWPFPS----DKVMLGYAYILTHPGTPCIFY----------DH----FFDWG-----LK 352
R F + V A+ LT G P I+Y D
Sbjct: 332 R---FYNGGSTRPVEQALAFTLTSRGVPAIYYGTEQYMTGNGDPYNRAMMTSFNTSTTAY 388
Query: 353 EAISKLAAVRNRNGINTASRVNILASDADVYI 384
I KLA +R N + DVYI
Sbjct: 389 NVIKKLAPLRKSNPAIAYGTTQQRWINNDVYI 420
|
| >2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 Length = 484 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 1e-29
Identities = 66/368 (17%), Positives = 113/368 (30%), Gaps = 75/368 (20%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--------GYMPGRLYDLDASKYGSQ 90
GG + + + + + G T +W+ P ++ + GY ++YD++ S +G+
Sbjct: 39 GGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVN-SNFGTA 97
Query: 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD 150
+LKSL A +G+ + D+V +H Y +F+ S I D
Sbjct: 98 DNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHP-YCLITDWD 156
Query: 151 KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS 210
+ G+ PD+D V+ DW+ L + DG R D
Sbjct: 157 NLTMVEDCWE--GDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRID----SVLE 210
Query: 211 ITKVYME--NTSPDF-AVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF 267
+ + N + VGE + G Q G L ++
Sbjct: 211 VQPDFFPGYNKASGVYCVGEIDN----GNPASDCPYQKVLDGVL--------------NY 252
Query: 268 T-TKGILQAAVQGELW------RLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPF 320
+L A +K P FI+NHD R +
Sbjct: 253 PIYWQLLYAFESSSGSISNLYNMIKSVASDCSD-----PTLLGNFIENHDNP---RFAKY 304
Query: 321 PSD--KVMLGYAYILTHPGTPCIFY----------DHF----FDWG-------LKEAISK 357
SD + +YI G P ++ + L I+
Sbjct: 305 TSDYSQAKNVLSYIFLSDGIPIVYAGEEQHYAGGKVPYNREATWLSGYDTSAELYTWIAT 364
Query: 358 LAAVRNRN 365
A+R
Sbjct: 365 TNAIRKLA 372
|
| >2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A Length = 478 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 9e-29
Identities = 66/369 (17%), Positives = 118/369 (31%), Gaps = 77/369 (20%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--------GYMPGRLYDLDASKYGSQ 90
GG + + + + + G T +W+ P + + GY +Y L+ YG+
Sbjct: 39 GGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLN-ENYGTA 97
Query: 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD 150
DLK+L A ++G+ + D+V NH + Y +F+ +S D D
Sbjct: 98 DDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYED 157
Query: 151 KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS 210
+ + + G++ PD+D V+ E DW+ L + DG R D
Sbjct: 158 QTQVE---DCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRID----TVKH 210
Query: 211 ITKVYME--NTSPDF-AVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAV-AAFD 266
+ K + N + +GE D + + +
Sbjct: 211 VQKDFWPGYNKAAGVYCIGEVLDGDP-------------------AYTCPYQNVMDGVLN 251
Query: 267 F-TTKGILQAAVQGELW------RLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP 319
+ +L A + P TF++NHD R
Sbjct: 252 YPIYYPLLNAFKSTSGSMDDLYNMINTVKSDCPD-----STLLGTFVENHDNP---RFAS 303
Query: 320 FPSD--KVMLGYAYILTHPGTPCIFY----------DHF----FDWG-------LKEAIS 356
+ +D A+I+ + G P I+ D L + I+
Sbjct: 304 YTNDIALAKNVAAFIILNDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIA 363
Query: 357 KLAAVRNRN 365
A+RN
Sbjct: 364 SANAIRNYA 372
|
| >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* Length = 686 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-27
Identities = 77/386 (19%), Positives = 116/386 (30%), Gaps = 78/386 (20%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGR---------LYDLDASKYGSQADLKSLIQAFRQ 102
L G+T +WL P ++ ++ +G+ +L+ Q
Sbjct: 61 LKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIE-EHFGNWTTFDTLVNDAHQ 119
Query: 103 KGIKCLADMVINH--------RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD-KEY 153
GIK + D V NH T + G DD F GD +
Sbjct: 120 NGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDA--TKGYFHHNGDISNW 177
Query: 154 SDGQGNDDTGEDFQPA---PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK----G 206
D D+ N + + L+D L G DG R D VK G
Sbjct: 178 DDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQL-VAHGADGLRIDAVKHFNSG 236
Query: 207 YAPSITKVYMENTSPDF-AVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAF 265
++ S+ + D VGE + D + + +G V F
Sbjct: 237 FSKSLADKLYQK--KDIFLVGEWYG----------DDPGTANHLEKVRYANNSGVNVLDF 284
Query: 266 DFTTKGILQAAVQGELW------RLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP 319
D I + + + +N +TFIDNHD R
Sbjct: 285 DL-NTVIRNVFGTFTQTMYDLNNMVNQTGNEYKY-----KENLITFIDNHDMS---RFLS 335
Query: 320 FPSD--KVMLGYAYILTHPGTPCIFY----------DHF----FDWG-----LKEAISKL 358
S+ + A+ILT GTP I+Y D + + +S L
Sbjct: 336 VNSNKANLHQALAFILTSRGTPSIYYGTEQYMAGGNDPYNRGMMPAFDTTTTAFKEVSTL 395
Query: 359 AAVRNRNGINTASRVNILASDADVYI 384
A +R N + DVYI
Sbjct: 396 AGLRRNNAAIQYGTTTQRWINNDVYI 421
|
| >3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A Length = 601 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 4e-27
Identities = 66/339 (19%), Positives = 110/339 (32%), Gaps = 65/339 (19%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ----GYMPGRLYDLDASKYGSQADLK 94
GG + + ++ G T +W P ++ A GY Y +D +YGS D
Sbjct: 144 GGDIRGTIDHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRID-PRYGSNEDFV 202
Query: 95 SLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154
L R++G+ + D+V++H + + + D +++G F+ +
Sbjct: 203 RLSTEARKRGMGLIQDVVLSHIGKH-------HWWMKDLPTPDWINYGGKFVPTQHHRVA 255
Query: 155 DGQ--------GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD---- 202
N G + PD++ NP V L W G G R D
Sbjct: 256 VQDPYAAQADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGY 315
Query: 203 ----FVKGYAPSITKVYMENTSPDF-AVGEKW--DSLSYGPDGKPDANQDGHRGALKDWV 255
F+ Y + Y P VG++W + AN DG+ L
Sbjct: 316 SDGAFLTEYTRRLMAEY-----PRLNMVGQEWSTRVPVVARWQRGKANFDGYTSHLP--- 367
Query: 256 QAAGGAVAAFDFTTKGILQAAVQGELW--------RLKDSNGKPPGFIGILPQNAVTFID 307
+ DF ++ A+ + P PQN V F
Sbjct: 368 -------SLMDFPLVDAMRNALSKTGEENGLNEVYETLSLDYLYPE-----PQNLVLFGG 415
Query: 308 NHDTGSTQR-LWPFPSD--KVMLGYAYILTHPGTPCIFY 343
NHD R D + + +++T P P +
Sbjct: 416 NHDMA---RMFSAAGEDFDRWRMNLVFLMTMPRIPQFYS 451
|
| >1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A* Length = 471 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 67/334 (20%), Positives = 114/334 (34%), Gaps = 34/334 (10%)
Query: 28 QGFNWESSNKAGGWYNSLKNSIPD-LSNAGITHVWLPPPSQSVAPQ-----GYMPGRLYD 81
F W+ +N + + L G V + PP++ + Y
Sbjct: 15 HLFEWK--------WNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYI 66
Query: 82 LDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDW 141
++ ++ G ++ + + G++ D VINH T G G + + +
Sbjct: 67 IN-TRSGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPY 125
Query: 142 GPS-FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWR 200
G F + N E D++ + V+ L D+MN + ++G G+R
Sbjct: 126 GSGDFHSPCEVNNYQDADNVRNCE-LVGLRDLNQGSDYVRGVLIDYMNHM-IDLGVAGFR 183
Query: 201 FDFVKGYAPSITKVY---MENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA 257
D K +P V ++N + D+ + Y D A+
Sbjct: 184 VDAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIYQE------VIDLGGEAISKNEYT 237
Query: 258 AGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT---GST 314
G V F F A G + + G G + +AV F+DNHD G +
Sbjct: 238 GFGCVLEFQFGVSLG-NAFQGGNQLKNLANWGPEWGLLE--GLDAVVFVDNHDNQRTGGS 294
Query: 315 QRLWPFPSDKVMLGYAYILTHP-GTPCIFYDHFF 347
Q L + A++L HP GT I F
Sbjct: 295 QILTYKNPKPYKMAIAFMLAHPYGTTRIMSSFDF 328
|
| >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* Length = 588 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 2e-25
Identities = 81/376 (21%), Positives = 140/376 (37%), Gaps = 75/376 (19%)
Query: 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108
+ L + GIT ++L P +S + Y +++D +G + LK+LI +KGI+ +
Sbjct: 182 LDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVD-PHFGDKETLKTLIDRCHEKGIRVM 240
Query: 109 ADMVINHRTAERKDGRG---IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGED 165
D V NH G +++ G S DW F ++ + N DT
Sbjct: 241 LDAVFNHC------GYEFAPFQDVWKNGESSKYKDW---FHIHEFPLQTEPRPNYDTFAF 291
Query: 166 FQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD--------FVKGYAPSITKVYME 217
P ++ NP V++ L D + E DGWR D F + + + +
Sbjct: 292 VPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALK-- 349
Query: 218 NTSPDFA-VGEKW-DSLSYGPDGKPDANQD-GHRGALKDWVQAAGGAVAAFDFTTKGILQ 274
PD +GE W D++ + + DA + + + A ++A F +
Sbjct: 350 ---PDVYILGEIWHDAMPWLRGDQFDAVMNYPFTDGVLRFF--AKEEISARQFANQ---- 400
Query: 275 AAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQR-LWPFPSD--KVMLGYAY 331
+ + S + + A + +HD T R L D KV L + +
Sbjct: 401 ------MMHVLHSYPNN------VNEAAFNLLGSHD---TSRILTVCGGDIRKVKLLFLF 445
Query: 332 ILTHPGTPCIFY----------DHF----FDWG-------LKEAISKLAAVRNRN-GINT 369
LT G+PCI+Y D W L + + +L A+R + +
Sbjct: 446 QLTFTGSPCIYYGDEIGMTGGNDPECRKCMVWDPMQQNKELHQHVKQLIALRKQYRSLRR 505
Query: 370 ASRVNILASDADVYIA 385
+ A D Y+
Sbjct: 506 GEISFLHADDEMNYLI 521
|
| >1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Length = 583 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 4e-25
Identities = 79/377 (20%), Positives = 129/377 (34%), Gaps = 76/377 (20%)
Query: 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108
+ LS G+ V+ P ++ Y + +D ++G + LK L+ ++GI+ L
Sbjct: 178 LDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQID-PQFGDKDTLKKLVDLCHERGIRVL 236
Query: 109 ADMVINHRTAERKDGRG---IYCIFEGGTSDDRLDWGPSFICRGDK-EYSDGQGNDDTGE 164
D V NH GR + + G DW F R E DG DT
Sbjct: 237 LDAVFNHS------GRTFPPFVDVLKNGEKSKYKDW---FHIRSLPLEVVDGIPTYDTFA 287
Query: 165 DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD--------FVKGYAPSITKVYM 216
P ++ +P V++ L + E G DGWR D F + + + +
Sbjct: 288 FEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFRRVVKQAN- 346
Query: 217 ENTSPDFA-VGEKW-DSLSYGPDGKPDANQD-GHRGALKDWVQAAGGAVAAFDFTTKGIL 273
PD +GE W +S + + DA + A+ D+ A F+
Sbjct: 347 ----PDAYILGEVWHESSIWLEGDQFDAVMNYPFTNAVLDFF--IHQIADAEKFSFM--- 397
Query: 274 QAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQR-LWPFPSD--KVMLGYA 330
L + + + +D+HD T R L D K+ L
Sbjct: 398 -------LGKQLAGYPRQ------ASEVMFNLLDSHD---TARLLTQADGDKRKMKLAVL 441
Query: 331 YILTHPGTPCIFY----------DHF----FDWG-------LKEAISKLAAVRNRN-GIN 368
+ T+ GTPCI+Y D +W L + +R + +
Sbjct: 442 FQFTYFGTPCIYYGDEVGLDGGHDPGCRKCMEWDETKHDKDLFAFYQTVIRLRQAHAALR 501
Query: 369 TASRVNILASDADVYIA 385
T + + A IA
Sbjct: 502 TGTFKFLTAEKNSRQIA 518
|
| >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A Length = 585 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 4e-24
Identities = 81/383 (21%), Positives = 132/383 (34%), Gaps = 89/383 (23%)
Query: 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108
+P L G+T ++ P S + Y +D ++G + L+ ++GIK +
Sbjct: 179 LPYLEELGVTALYFTPIFASPSHHKYDTADYLAID-PQFGDLPTFRRLVDEAHRRGIKII 237
Query: 109 ADMVINH--------RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160
D V NH R +K + Y DW F + N
Sbjct: 238 LDAVFNHAGDQFFAFRDVLQKGEQSRYK-----------DW---FFIEDFPVSKTSRTNY 283
Query: 161 DTGEDFQPA-PDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFD--------FVKGYAPS 210
+T PA P + NP V++ L D W++ G DGWR D F + +
Sbjct: 284 ETFAVQVPAMPKLRTENPEVKEYLFDVARFWMEQ--GIDGWRLDVANEVDHAFWREFRRL 341
Query: 211 ITKVYMENTSPDFA-VGEKW-DSLSYGPDGKPDANQD-GHRGALKDWVQAAGGAVAAFDF 267
+ + PD VGE W D+ + + D+ + R ++ + A G + A F
Sbjct: 342 VKSLN-----PDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFF--ATGEIHAERF 394
Query: 268 TTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQR-LWPFPSD--K 324
EL R + + Q +D+HD T+R L + K
Sbjct: 395 DA----------ELTRARMLYPEQ------AAQGLWNLLDSHD---TERFLTSCGGNEAK 435
Query: 325 VMLGYAYILTHPGTPCIFY----------DHF----FDWG-------LKEAISKLAAVRN 363
L + +T+ GTP I+Y D W L E +L +R+
Sbjct: 436 FRLAVLFQMTYLGTPLIYYGDEIGMAGATDPDCLRPMIWEEKEQNRGLFEFYKELIRLRH 495
Query: 364 RN-GINTASRVNILASDADVYIA 385
R + + + A A
Sbjct: 496 RLASLTRGNVRSWHADKQANLYA 518
|
| >2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A Length = 488 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 3e-22
Identities = 73/404 (18%), Positives = 123/404 (30%), Gaps = 76/404 (18%)
Query: 31 NWESSNKAGGWY----NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASK 86
+W+S G+ + + + N GI ++ P QS + Y Y +D
Sbjct: 40 DWDSMPTLQGYKGGDLWGIMEDLDYIQNLGINAIYFTPIFQSASNHRYHTHDYYQVD-PM 98
Query: 87 YGSQADLKSLIQAFRQKGIKCLADMVINH---RTAERKDGRGIYCIFEGGTSDDRLDWGP 143
G K L+ A Q+ IK + D V NH D E G ++W
Sbjct: 99 LGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVL------ENGPHSPWVNW-- 150
Query: 144 SFICRGDKEYSDGQGND---DTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGW 199
F G + P+ +H NP V++ + + WL + G DGW
Sbjct: 151 -FKIEGWPLSPYNGEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYWL--KFGIDGW 207
Query: 200 RFD---------FVKGYAPSITKVYMENTSPDFA-VGEKW-DSLSYGPDGKPDANQD-GH 247
R D F + + + P+ VGE W DS + + D +
Sbjct: 208 RLDVPFEIKTPGFWQEFRDRTKAIN-----PEAYIVGEVWGDSRQWLDGTQFDGVMNYLF 262
Query: 248 RGALKDWV----QAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAV 303
G + + + A ++ + + +
Sbjct: 263 AGPTIAFAAGDRVVLEQVQSRDYQPYPPLFAAEYATKIQEVLQLYPWE------IQLTQL 316
Query: 304 TFIDNHDTGSTQR-LWPFPSD--KVMLGYAYILTHPGTPCIFY----------DHF---- 346
+ +HD T R + D V L +LT PG P I+Y D
Sbjct: 317 NLLASHD---TARLMTIAGGDIASVELSTLLLLTFPGAPSIYYGDEVGLPGGIDPDSRRG 373
Query: 347 FDWG------LKEAISKLAAVRNRNGINTASRVNILASDADVYI 384
F + +L +R +L + +Y+
Sbjct: 374 FPLEANWNQEIFNTHRQLITIRQTYPALRTGDYQVLYAQGQLYL 417
|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} Length = 475 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 5e-22
Identities = 72/382 (18%), Positives = 126/382 (32%), Gaps = 71/382 (18%)
Query: 31 NWESSNKAGGWY----NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASK 86
WE+ G+ + +P L + G+ ++L P S A Y + +D
Sbjct: 34 PWEAPPTLRGFKGGTLWGVAEKLPYLLDLGVEAIYLNPVFASTANHRYHTVDYFQVD-PI 92
Query: 87 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAER----KDGRGIYCIFEGGTSDDRLDWG 142
G L+ L++ G++ + D V NH T + + E G DW
Sbjct: 93 LGGNEALRHLLEVAHAHGVRVILDGVFNH-TGRGFFAFQH------LMENGEQSPYRDW- 144
Query: 143 PSFICRGDKEYS-DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWR 200
+ +G + N + P + P V++ L W+ G DGWR
Sbjct: 145 --YHVKGFPLKAYTAHPNYEAWWGNPELPKLKVETPAVREYLLAVAEHWI--RFGVDGWR 200
Query: 201 FD---------FVKGYAPSITKVYMENTSPDFA-VGEKW-DSLSYGPDGKPDANQD-GHR 248
D F + + + P+ VGE W ++ + DA +
Sbjct: 201 LDVPNEIPDPTFWREFRQRVKGAN-----PEAYIVGEIWEEADFWLQGDMFDAVMNYPLA 255
Query: 249 GALKDWVQAAGGAVAAFDFTTKGILQAAVQGELW-RLKDSNGKPPGFIGILPQNAVTFID 307
A+ +V T G ++ RL+D G+ + + + +
Sbjct: 256 RAVLGFVGGEALDRDLAAQTGLGRIEPLQALAFSHRLEDLFGRYRPEV---VRAQMNLLT 312
Query: 308 NHDTGSTQR-LWPFPSD--KVMLGYAYILTHPGTPCIFY----------DHF----FDWG 350
+HDT R L + L A + PG P ++Y D W
Sbjct: 313 SHDT---PRLLSLMRGSVERARLALALLFLLPGNPTVYYGEEVGMAGGKDPENRGGMVWE 369
Query: 351 -------LKEAISKLAAVRNRN 365
L+E + +LA +R +
Sbjct: 370 EARWQKDLRETVKRLARLRKEH 391
|
| >3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* Length = 1108 | Back alignment and structure |
|---|
Score = 97.4 bits (242), Expect = 7e-22
Identities = 38/225 (16%), Positives = 65/225 (28%), Gaps = 45/225 (20%)
Query: 25 LLFQGFNWESSNKAGGW---YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGR--- 78
L+++GF+ + + +N GIT + P +S ++
Sbjct: 832 LIYEGFSNFQPKATTHDELTNVVIAKNADVFNNWGITSFEMAPQYRSSGDHTFLDSTIDN 891
Query: 79 ------LYDLDAS---KYGSQADLKSLIQAFRQKGIKCLADMVINHR---------TAER 120
YDL + KYG+ DL++ IQA ++ +AD+V N +A R
Sbjct: 892 GYAFTDRYDLGFNTPTKYGTDGDLRATIQALHHANMQVMADVVDNQVYNLPGKEVVSATR 951
Query: 121 KD--------------------GRGIYCIFEGGTSDDRLDW-GPSFICRGDKEYSDGQGN 159
G G Y G + L P +Y
Sbjct: 952 AGVYGNDDATGFGTQLYVTNSVGGGQYQEKYAGQYLEALKAKYPDLFEGKAYDYWYKNYA 1011
Query: 160 DDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
+D + D + + W G +V
Sbjct: 1012 NDGSNPYYTLSHGDRESIPADVAIKQWSAKYMNGTNVLGNGMGYV 1056
|
| >3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* Length = 1108 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 3e-09
Identities = 37/293 (12%), Positives = 72/293 (24%), Gaps = 82/293 (27%)
Query: 140 DWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL--------- 190
+ + DF A D+D+ NP VQ E +W+++L
Sbjct: 382 GYLKYGNNPLTPTTNSDYRQPGNAFDFLLANDVDNSNPVVQAENLNWLHYLMNFGTITAG 441
Query: 191 KTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGA 250
+ + FD R D V + + + V + A + H
Sbjct: 442 QDDANFDSIRIDAVDFIHNDTIQRTYDYLRDAYQVQQSE------------AKANQHISL 489
Query: 251 LKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGIL------------ 298
++ + A + + +AA + +
Sbjct: 490 VEAGLDAGTSTIHNDALIESNLREAATLSLTNEPGKNKPLTNMLQDVDGGTLITDHTQNS 549
Query: 299 ----PQNAVTFIDNHDTGSTQRLWPFPSDKVM---------------------------- 326
+ I HD G +++ +D
Sbjct: 550 TENQATPNYSIIHAHDKGVQEKVGAAITDATGADWTNFTDEQLKAGLELFYKDQRATNKK 609
Query: 327 -------LGYAYILTHP-GTPCIFYDHFFDWG---------LKEAISKLAAVR 362
YA +LT+ P ++Y + +A+ L R
Sbjct: 610 YNSYNIPSIYALMLTNKDTVPRMYYGDMYQDDGQYMANKSIYYDALVSLMTAR 662
|
| >1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A Length = 637 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 9e-22
Identities = 63/372 (16%), Positives = 111/372 (29%), Gaps = 90/372 (24%)
Query: 56 GITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKG----IKCLADM 111
G ++L P ++ Y +D +G + L++LI + D
Sbjct: 205 GANILYLNPIFKAPTNHKYDTQDYMAVD-PAFGDNSTLQTLINDIHSTANGPKGYLILDG 263
Query: 112 VINH--RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKE-YSDGQGNDDTGEDFQP 168
V NH + D + +G W + + Y+ G +
Sbjct: 264 VFNHTGDSHPWFDKYNNF-SSQGAYESQSSPWYNYYTFYTWPDSYASFLGFNSL------ 316
Query: 169 APDIDHLNP--RVQKELSDWMN-----WLKTEIGFDGWRFD------------------- 202
P +++ N V+ + + N +L DGWR D
Sbjct: 317 -PKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRLDAAQYVDANGNNGSDVTNHQ 375
Query: 203 FVKGYAPSITKVYMENTSPDFA-VGEKWDS----LSYGPDGKPDANQDGHRGALKDWVQA 257
+ ++ V + A +GE W + + G N DG + +W+
Sbjct: 376 IWSEFRNAVKGVN-----SNAAIIGEYWGNANPWTAQGNQWDAATNFDGFTQPVSEWITG 430
Query: 258 AGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQR- 316
+ +T L + + + Q+ + F+ NHD R
Sbjct: 431 KDYQNNSASISTTQFDSW-----LRGTRANYPTN------VQQSMMNFLSNHDI---TRF 476
Query: 317 LWPFPSD--KVMLGYAYILTHPGTPCIFY----------DHF----FDWG-------LKE 353
D K L + +T+ GTP I+Y D FDW
Sbjct: 477 ATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQGGADPDNRRSFDWSQATPSNSAVA 536
Query: 354 AISKLAAVRNRN 365
KL +RN+
Sbjct: 537 LTQKLITIRNQY 548
|
| >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} Length = 449 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 4e-21
Identities = 64/380 (16%), Positives = 113/380 (29%), Gaps = 88/380 (23%)
Query: 49 IPDLSNAGITHVWLPP--PSQSVAPQ-----GYMPGRLYDLDASKYGSQADLKSLIQAFR 101
+ + + G +WL P P V + Y ++ +YG+ AD K+L
Sbjct: 36 LQRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGIN-PEYGTLADFKALTDRAH 94
Query: 102 QKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSD------DRLDWGPSFICRGDKEYSD 155
+ G+K + D+V NH TS + +W F D +
Sbjct: 95 ELGMKVMLDIVYNH------------------TSPDSVLATEHPEW---FYHDADGQ--- 130
Query: 156 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFD--------FVKG 206
+ D+ D+D+ + + + D + W + DG+R D F
Sbjct: 131 ---LTNKVGDWSDVKDLDYGHHELWQYQIDTLLYWSQ---FVDGYRCDVAPLVPLDFWLE 184
Query: 207 YAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAF 265
+ Y P+ + E G + G+ G + A +
Sbjct: 185 ARKQVNAKY-----PETLWLAESA-----GSGFIEELRSQGYTGLSDSELYQAFDMTYDY 234
Query: 266 DFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAV--TFIDNHDTGSTQRLWPFPSD 323
D + + R D + P N V F++NHD L ++
Sbjct: 235 DVFGDFKDYWQGRSTVERYVDLLQR---QDATFPGNYVKMRFLENHDNARMMSLMHSKAE 291
Query: 324 KVMLGYAYILTHPGTPCIFY----------DHF----FDWG----LKEAISKLAAVRNRN 365
V +I G P I+ F + I KL ++
Sbjct: 292 AVNN-LTWIFMQRGIPLIYNGQEFLAEHQPSLFDRDTMVADRHGDVTPLIQKLVTIKQLP 350
Query: 366 GINTASRVNILASDADVYIA 385
+ A + + V I
Sbjct: 351 LLRAADYQLAVVEEGIVKIT 370
|
| >4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 4e-21
Identities = 67/401 (16%), Positives = 119/401 (29%), Gaps = 106/401 (26%)
Query: 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDAS-------KYGSQADLKSLIQAFR 101
I L + G+ ++L P S + Y D G+ D + L+Q
Sbjct: 271 IDHLEDLGVETIYLTPIFSSTSYHRY--------DTIDYKSIDKYLGTMEDFEKLVQVLH 322
Query: 102 QKGIKCLADMVINH--------RTAERKDGRGIYC---IFEGGTSDDRLDWGPSFICRGD 150
+ IK + D+ ++H A R+ Y F + ++ +I +
Sbjct: 323 SRKIKIVLDITMHHTNPCNELFVKALREGENSPYWEMFSFLSPPPKEIVELMLKYIDGEE 382
Query: 151 KEYSDGQGNDDTGEDFQPA---------PDIDHLNPRVQKELSDWMN-WLKTEIGFDGWR 200
+ D + +H NPR D W+ G DG+R
Sbjct: 383 CRSRELYKLDYFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYFIDITKFWIDK--GIDGFR 440
Query: 201 FD--------FVKGYAPSITKVYMENTSPDFA-VGEKWDSLSYGPDGKPDANQDGH---- 247
D ++K Y I Y PDF +GE ++ P D D
Sbjct: 441 IDVAMGIHYSWMKQYYEYIKNTY-----PDFLVLGELAEN----PRIYMDYF-DSAMNYY 490
Query: 248 -RGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFI 306
R A+ + + + +F ++ + + + +
Sbjct: 491 LRKAILELL--IYKRIDLNEFISR----------INNVYAYIPHYK------ALSLYNML 532
Query: 307 DNHDTGSTQR-LWPFPSDKVM-LGYAYILTHPGTPCIFY----------DHF----FDWG 350
+HD R ++K++ L Y I PG+P I+Y D W
Sbjct: 533 GSHD---VPRIKSMVQNNKLLKLMYVLIFALPGSPVIYYGDEIGLEGGRDPDNRRPMIWD 589
Query: 351 -------LKEAISKLAAVRNRNGINTASRVNILASDADVYI 384
L E I KL + + +++
Sbjct: 590 RGNWDLELYEHIKKLIRIYKSCRSMRHGYFLVENLGSNLLF 630
|
| >3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* Length = 1039 | Back alignment and structure |
|---|
Score = 69.8 bits (170), Expect = 6e-13
Identities = 37/187 (19%), Positives = 64/187 (34%), Gaps = 37/187 (19%)
Query: 24 ALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPP---------SQSVAP 71
++++GF+ + ++ + + + GIT L P S+
Sbjct: 664 NVIYEGFSNFIYWPTTESERTNVRIAQNADLFKSWGITTFELAPQYNSSKDGTFLDSIID 723
Query: 72 QGYMPGRLYDL---DASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA---------- 118
GY YDL +KYGS DL++ +QA + G++ +AD V +
Sbjct: 724 NGYAFTDRYDLGMSTPNKYGSDEDLRNALQALHKAGLQAIADWVPDQIYNLPGKEAVTVT 783
Query: 119 ------ERKDGRGI----YCIFEGGTSDDRLDWGPSFICRGDKEYSD--GQGNDDTGEDF 166
+ I Y G + + +G F+ KEY Q T
Sbjct: 784 RSDDHGTTWEVSPIKNVVYITNTIGGGEYQKKYGGEFLDTLQKEYPQLFSQVYPVTQTTI 843
Query: 167 QPAPDID 173
P+ I
Sbjct: 844 DPSVKIK 850
|
| >3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* Length = 1039 | Back alignment and structure |
|---|
Score = 66.3 bits (161), Expect = 9e-12
Identities = 46/304 (15%), Positives = 79/304 (25%), Gaps = 93/304 (30%)
Query: 134 TSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL--- 190
+ D + S ++ ++ G + G +F A DID+ NP VQ E +W+ +L
Sbjct: 209 VNSDLTKYANSDWRLMNRTATNIDGKNYGGAEFLLANDIDNSNPVVQAEELNWLYYLMNF 268
Query: 191 ------KTEIGFDGWRFD--------FVKGYAPSITKVYMENTSPD-----FAVGEKWDS 231
E FDG R D + Y S + E W
Sbjct: 269 GTITGNNPEANFDGIRVDAVDNVDVDLLSIARDYFNAAYNMEQSDASANKHINILEDWG- 327
Query: 232 LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE------LWRLK 285
+V G D + + + G L +L
Sbjct: 328 -----------------WDDPAYVNKIGNPQLTMDDRLRNAIMDTLSGAPDKNQALNKLI 370
Query: 286 DS--NGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVM----------------- 326
+ + F+ HD+ + ++
Sbjct: 371 TQSLVNRANDNTENAVIPSYNFVRAHDSNAQDQIRQAIQAATGKPYGEFNLDDEKKGMEA 430
Query: 327 ------------------LGYAYILTHP-GTPCIFY-DHFFDWG--------LKEAISKL 358
Y +LT+ P ++Y D + D G + I+ L
Sbjct: 431 YINDQNSTNKKWNLYNMPSAYTILLTNKDSVPRVYYGDLYQDGGQYMEHKTRYFDTITNL 490
Query: 359 AAVR 362
R
Sbjct: 491 LKTR 494
|
| >1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A* Length = 441 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 66/341 (19%), Positives = 113/341 (33%), Gaps = 117/341 (34%)
Query: 56 GITHVWLPPPSQSVAPQGY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKC 107
GI VWL P S++ GY +YGS+ + K +I+AF GIK
Sbjct: 36 GIDFVWLMPVFSSISFHGYDVVDFYSFKA---------EYGSEREFKEMIEAFHDSGIKV 86
Query: 108 LADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFI--CRGDKEY------SDGQGN 159
+ D+ I+H T W F +GD Y ++ + +
Sbjct: 87 VLDLPIHH------------------TGFLH-TW---FQKALKGDPHYRDYYVWANKETD 124
Query: 160 DDTGEDF--QPA------------------PDIDHLNPRVQKELSDWMN-WLKTEIGFDG 198
D ++ + PD+++ NP+V E+ + L ++G DG
Sbjct: 125 LDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLNYDNPQVFDEMKRLVLHLL--DMGVDG 182
Query: 199 WRFDFVKGYAPSITKVYMENTS---------PDFAVGEKWDSLSYGPDGKPDANQDGHRG 249
+RFD K + +N + E W
Sbjct: 183 FRFDAAKH----MRDTIEQNVRFWKYFLSDLKGIFLAEIWAEARM--------------- 223
Query: 250 ALKDWVQAAGGAVAAFDFT-TKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAV--TFI 306
+ +F + I +A + L +S + ++ ++ + F
Sbjct: 224 ----VDEHGRIFGYMLNFDTSHCIKEAVWKENTRVLIESIER-----AVIAKDYLPVNFT 274
Query: 307 DNHDTGSTQRLWP----FPSDKVMLGYAYILTHPGTPCIFY 343
NHD RL F +K+ L + + T PG P +FY
Sbjct: 275 SNHD---MSRLASFEGGFSKEKIKLSISILFTLPGVPLVFY 312
|
| >3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A* Length = 655 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 4e-10
Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 29/182 (15%)
Query: 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQ---GYMPGRLYDLDASKYGSQADLKSLIQAFR 101
++ + L G+ ++ L P + + GY + G+ DL +L +A R
Sbjct: 113 VEERLDYLEGLGVKYLHLMPLLRPREGENDGGYAVQDYRAVR-PDLGTMDDLSALARALR 171
Query: 102 QKGIKCLADMVINHRTAE----------RKDGRGIYCIFEGGTSDD-----RLDWGPSFI 146
+GI + D+V+NH E R + +F D + P F
Sbjct: 172 GRGISLVLDLVLNHVAREHAWAQKARAGDPKYRAYFHLFPDRRGPDAFEATLPEIFPDFA 231
Query: 147 CRGDKEYSDGQGNDDTGE------DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWR 200
G+ + + G + G +Q D++ NP V E D + +L G + +R
Sbjct: 232 -PGNFSWDEEIGEGEGGWVWTTFNSYQ--WDLNWANPDVFLEFVDIILYL-ANRGVEVFR 287
Query: 201 FD 202
D
Sbjct: 288 LD 289
|
| >3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A Length = 644 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 4e-09
Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 27/179 (15%)
Query: 45 LKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101
+ +P L G+ ++ L P G+ ++ GS DL +L R
Sbjct: 108 VAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVE-PSLGSNDDLVALTSRLR 166
Query: 102 QKGIKCLADMVINH--------RTAERKD--GRGIYCIFEGGTSDDRLDWGPSF-ICRGD 150
+ GI AD V+NH + A D Y F T D + +
Sbjct: 167 EAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVPD--RYEATLGQVFPH 224
Query: 151 KEYSDGQGNDDTGE-------DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD 202
+ DDT + +Q D++ NP V +++ M L +G + +R D
Sbjct: 225 TAPGNFTWVDDTAQWMWTTFYPYQ--WDLNWSNPAVFGDMALAMLRL-ANLGVEAFRLD 280
|
| >3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* Length = 695 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 6e-09
Identities = 44/343 (12%), Positives = 87/343 (25%), Gaps = 83/343 (24%)
Query: 32 WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPP-----------PSQSVAPQGYMPGRLY 80
+ + G + + +P ++ G V+LPP + +++ G G +
Sbjct: 242 EGTPHTPHGTFRTAARRLPAIAAMGFDVVYLPPIHPIGTTHRKGRNNTLSATGDDVGVPW 301
Query: 81 DLDAS---------KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFE 131
+ + G+ D + + G++ D +
Sbjct: 302 AIGSPEGGHDSIHPALGTLDDFDHFVTEAGKLGLEIALDFALQC---------------- 345
Query: 132 GGTSDDRL-----DWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDW 186
+ D +W F R D + + +D P D + E
Sbjct: 346 --SPDHPWVHKHPEW---FHHRPDGTIAHAENPPKKYQDIYP-IAFDADPDGLATETVRI 399
Query: 187 MN-WLKTEIGFDGWRFD---FVKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPD 241
+ W+ + G +R D + T PD + E + P
Sbjct: 400 LRHWM--DHGVRIFRVDNPHTKPVAFWERVIADINGTDPDVIFLAEAFTR----PAMMAT 453
Query: 242 ANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWR-LKDSNGKPPGFIGILPQ 300
Q G F + + EL L + +G+ ++
Sbjct: 454 LAQIG------------------FQQSYTYFTWRNTKQELTEYLTELSGEAASYM----- 490
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFY 343
F N L + T T I+
Sbjct: 491 -RPNFFANTPDILHAYLQHGGRPAFEVRAVLAATLSPTWGIYS 532
|
| >1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A* Length = 628 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 8e-09
Identities = 41/180 (22%), Positives = 67/180 (37%), Gaps = 30/180 (16%)
Query: 45 LKNSIPDLSNAGITHVWLPP--PS-QSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101
LK+ IP G+T++ L P + + GY D++ G+ DL+ +I A
Sbjct: 115 LKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVN-PALGTIGDLREVIAALH 173
Query: 102 QKGIKCLADMVINHRTAE----------RKDGRGIYCIFEGGTSDDRL--DWGPSFICRG 149
+ GI + D + NH + E Y IF D+ F
Sbjct: 174 EAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIF---P 230
Query: 150 DKEYSDGQGNDDTGE-------DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD 202
D+ + G FQ D+++ NP V + ++ M +L +G D R D
Sbjct: 231 DQHPGGFS-QLEDGRWVWTTFNSFQ--WDLNYSNPWVFRAMAGEMLFL-ANLGVDILRMD 286
|
| >1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1 Length = 488 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 68/341 (19%), Positives = 101/341 (29%), Gaps = 105/341 (30%)
Query: 56 GITHVWLPPPSQSVAPQ--GY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKGI 105
G+ +WL P +S P GY P YG+ D L++A Q+GI
Sbjct: 48 GVNGIWLMPIFKS--PSYHGYDVTDYYKINP---------DYGTLEDFHKLVEAAHQRGI 96
Query: 106 KCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFI-CRGDKE--YSD------- 155
K + D+ INH TS+ W F+ DK Y D
Sbjct: 97 KVIIDLPINH------------------TSERH-PW---FLKASRDKNSEYRDYYVWAGP 134
Query: 156 GQGNDDTGEDFQPA-----------------PDIDHLNPRVQKELSDWMN-WLKTEIGFD 197
+T D PD+++ NP VQ+++ WL + G D
Sbjct: 135 DTDTKETKLDGGRVWHYSPTGMYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWL--KQGVD 192
Query: 198 GWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPD------ANQDGHRGAL 251
G+R D P W+ + A
Sbjct: 193 GFRLDGAMHIFP-------PAQYDK--NFTWWEKFRQEIEEVKPVYLVGEVWDISETVAP 243
Query: 252 KDWVQAAGGAVAAFDFTTKGILQAAVQGE-----LWRLKDSNGKPPGFIGILPQNAVTFI 306
G + F+F + A + + K G +G F+
Sbjct: 244 ----YFKYGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYIDAPFL 299
Query: 307 DNHDTGSTQR----LWPFPSDKVMLGYAYILTHPGTPCIFY 343
NHD Q +K + + LT PG P I+Y
Sbjct: 300 TNHD----QNRILDQLGQDRNKARVAASIYLTLPGNPFIYY 336
|
| >3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str} Length = 704 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 34/210 (16%), Positives = 59/210 (28%), Gaps = 46/210 (21%)
Query: 56 GITHVWLPPPSQSVAPQ---GYMPGRLYDLDAS-------KYGSQADLKSLIQAFRQKGI 105
G+TH++L P ++ P GY D + G + + LI + KG+
Sbjct: 28 GVTHLYLSPVLKA-RPGSTHGY--------DVVDYNTINDELGGEEEYIRLIDEAKSKGL 78
Query: 106 KCLADMVINHRTA----------ERKDGRG----IYCIFEGGTSDDRL-DWGPSFICRGD 150
+ D+V NH A K GR Y F R+ G +
Sbjct: 79 GIIQDIVPNH-MAVHHTNWRLMDVLKKGRHSRYYNYFDFYEEEEKIRIPILGDRNF-KIT 136
Query: 151 KEYSDGQGN--DDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 208
+ + + + + ++ K + + F
Sbjct: 137 YVNDEPYLDYYGNLFPINDEGRNYLNDIEKLLKVQYYELVDWRDYPS-YRRFFA-----V 190
Query: 209 PSITKVYMENTSPDFAVGEKWDSLSYGPDG 238
+ V E LS+ DG
Sbjct: 191 NELIAVRQEL--EWVFEDSHSKILSFEVDG 218
|
| >1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A* Length = 504 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 6e-06
Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 33/181 (18%)
Query: 45 LKNSIPDLSNAGITHVWLPP--PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQ 102
+ + + + V + P A G+ P +D + GS D+ L
Sbjct: 22 MTDILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVD-ERLGSWDDVAEL-----S 75
Query: 103 KGIKCLADMVINHRTAE-------RKDG-----RGIYCIFEGGTSDDRLDWGPSFICRGD 150
K + D ++NH + E G ++ + + + I R
Sbjct: 76 KTHNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGIYR-P 134
Query: 151 KEYSDGQGNDDTGE---------DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201
+ G+ Q DID + + + L + + R
Sbjct: 135 RPGLPFTHYKFAGKTRLVWVSFTPQQ--VDIDTDSDKGWEYLMSIFDQM-AASHVSYIRL 191
Query: 202 D 202
D
Sbjct: 192 D 192
|
| >1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1 Length = 720 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 43/310 (13%), Positives = 87/310 (28%), Gaps = 78/310 (25%)
Query: 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDL-DASK----YGSQADLKSLIQAFRQK 103
+ + G++H++L P + G G YD+ D S+ G + + + LI+
Sbjct: 23 LWYFXDLGVSHLYLSPVLMASP--GSNHG--YDVIDHSRINDELGGEKEYRRLIETAHTI 78
Query: 104 GIKCLADMVINH---------------------------------RTAERKDGRGIYCIF 130
G+ + D+V NH + G + +
Sbjct: 79 GLGIIQDIVPNHMAVNSLNWRLMDVLXMGXXSXYYTYFDFFPEDDKIRLPILGEDLDTVI 138
Query: 131 EGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGE--DFQPAPDIDHLNPRVQKELSDWMN 188
G D F+ + + +D + Q + NP + D
Sbjct: 139 SKGLLKIVKDGDEYFLEYFKWKLPLTEVGNDIYDTLQKQNYTLMSWKNPPSYRRFFDVNT 198
Query: 189 WLK----------------TEIGFDGWRFDFVKG-YAPSITKVYMENTSPD--------F 223
+ ++ DG+R D + G Y P + + +
Sbjct: 199 LIGVNVEXDHVFQESHSXILDLDVDGYRIDHIDGLYDPEKYINDLRSIIKNXIIIVEKIL 258
Query: 224 AVGEKWDSLSYGPDGKPDANQ-----DGHRGALKDWVQAAGGAVAAFDFTT----KGILQ 274
E+ S G G N + ++ + + + + I+
Sbjct: 259 GFQEELKLNSDGTTGYDFLNYSNLLFNFNQEIMDSIYENFTAEKISISESIXKIKAQIID 318
Query: 275 AAVQGELWRL 284
E+ RL
Sbjct: 319 ELFSYEVXRL 328
|
| >2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* Length = 543 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 22/71 (30%)
Query: 56 GITHVWLPPPSQSVAPQ---GY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKG 104
G+ +WL P S P GY +G+ AD+ +L+ + +G
Sbjct: 44 GVMAIWLSPVYDS--PMDDNGYDIANYEAIAD---------IFGNMADMDNLLTQAKMRG 92
Query: 105 IKCLADMVINH 115
IK + D+V+NH
Sbjct: 93 IKIIMDLVVNH 103
|
| >3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A* Length = 589 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 22/71 (30%)
Query: 56 GITHVWLPPPSQSVAPQ---GY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKG 104
G +W+ P S PQ GY P YG+ D +LI+ + G
Sbjct: 53 GADAIWISPFYDS--PQDDMGYDIANYEKVWP---------TYGTNEDCFALIEKTHKLG 101
Query: 105 IKCLADMVINH 115
+K + D+VINH
Sbjct: 102 MKFITDLVINH 112
|
| >1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1 Length = 558 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 22/71 (30%)
Query: 56 GITHVWLPPPSQSVAPQ---GY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKG 104
GI +WL P +S P GY M ++G+ D L+ ++
Sbjct: 44 GIDVIWLSPVYES--PNDDNGYDISDYCKIMN---------EFGTMEDWDELLHEMHERN 92
Query: 105 IKCLADMVINH 115
+K + D+V+NH
Sbjct: 93 MKLMMDLVVNH 103
|
| >1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1 Length = 570 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 22/71 (30%)
Query: 56 GITHVWLPPPSQSVAPQ---GY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKG 104
GI +W+ P S P GY M +YG+ D SL+ +++
Sbjct: 58 GIDAIWINPHYDS--PNTDNGYDISNYRQIMK---------EYGTMEDFDSLVAEMKKRN 106
Query: 105 IKCLADMVINH 115
++ + D+VINH
Sbjct: 107 MRLMIDVVINH 117
|
| >2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP} Length = 555 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 4e-04
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 22/71 (30%)
Query: 56 GITHVWLPPPSQSVAPQ---GY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKG 104
G+ VW+ P +S P GY M ++G+ D L+ ++G
Sbjct: 44 GVDIVWICPIYRS--PNADNGYDISDYYAIMD---------EFGTMDDFDELLAQAHRRG 92
Query: 105 IKCLADMVINH 115
+K + D+VINH
Sbjct: 93 LKVILDLVINH 103
|
| >1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* Length = 557 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 4e-04
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 22/71 (30%)
Query: 56 GITHVWLPPPSQSVAPQ---GY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKG 104
GI +W+ P S P GY M +YG+ D L+ +++G
Sbjct: 45 GIDAIWINPHYAS--PNTDNGYDISDYREVMK---------EYGTMEDFDRLMAELKKRG 93
Query: 105 IKCLADMVINH 115
++ + D+VINH
Sbjct: 94 MRLMVDVVINH 104
|
| >3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A* Length = 669 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 7e-04
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 17/68 (25%)
Query: 56 GITHVWLPPPSQSVAPQGY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKC 107
G+ +WL P ++ GY P + G+++D L+ +GIK
Sbjct: 73 GVKALWLSPIHPCMSYHGYDVTDYTKVNP---------QLGTESDFDRLVTEAHNRGIKI 123
Query: 108 LADMVINH 115
D V+NH
Sbjct: 124 YLDYVMNH 131
|
| >2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A Length = 424 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 8e-04
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 52 LSNAGITHVWLPPPSQSVAPQ---GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108
LS+ + + L P ++ + L +D +GS+ D SL+Q+ ++K I+ +
Sbjct: 45 LSSLKVKGLVLGPIHKN--QKDDVAQ--TDLLQID-PNFGSKEDFDSLLQSAKKKSIRVI 99
Query: 109 ADMVINH 115
D+ N+
Sbjct: 100 LDLTPNY 106
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 424 | |||
| 1ht6_A | 405 | AMY1, alpha-amylase isozyme 1; barley, beta-alpha- | 100.0 | |
| 1gcy_A | 527 | Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b | 100.0 | |
| 2wc7_A | 488 | Alpha amylase, catalytic region; CD/PUL-hydrolyzin | 100.0 | |
| 1lwj_A | 441 | 4-alpha-glucanotransferase; alpha-amylase family, | 100.0 | |
| 4aee_A | 696 | Alpha amylase, catalytic region; hydrolase, hypert | 100.0 | |
| 2z1k_A | 475 | (NEO)pullulanase; hydrolase, structural genomics, | 100.0 | |
| 1wza_A | 488 | Alpha-amylase A; hydrolase, halophilic, thermophil | 100.0 | |
| 4aef_A | 645 | Neopullulanase (alpha-amylase II); hydrolase, ther | 100.0 | |
| 3edf_A | 601 | FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin c | 100.0 | |
| 1j0h_A | 588 | Neopullulanase; beta-alpha-barrels, hydrolase; 1.9 | 100.0 | |
| 4aie_A | 549 | Glucan 1,6-alpha-glucosidase; hydrolase, glycoside | 100.0 | |
| 1ea9_C | 583 | Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A | 100.0 | |
| 1wzl_A | 585 | Alpha-amylase II; pullulan, GH-13, alpha-amylase f | 100.0 | |
| 2zic_A | 543 | Dextran glucosidase; TIM barrel, (beta/alpha)8-bar | 100.0 | |
| 1mxg_A | 435 | Alpha amylase; hyperthermostable, family 13 glycos | 100.0 | |
| 1ud2_A | 480 | Amylase, alpha-amylase; calcium-free, alkaline, hy | 100.0 | |
| 3bh4_A | 483 | Alpha-amylase; calcium, carbohydrate metabolism, g | 100.0 | |
| 1wpc_A | 485 | Glucan 1,4-alpha-maltohexaosidase; maltohexaose-pr | 100.0 | |
| 1qho_A | 686 | Alpha-amylase; glycoside hydrolase, starch degrada | 100.0 | |
| 1hvx_A | 515 | Alpha-amylase; hydrolase, glycosyltransferase, the | 100.0 | |
| 1uok_A | 558 | Oligo-1,6-glucosidase; sugar degradation, hydrolas | 100.0 | |
| 1m53_A | 570 | Isomaltulose synthase; klebsiella SP. LX3, sucrose | 100.0 | |
| 2aaa_A | 484 | Alpha-amylase; glycosidase; 2.10A {Aspergillus nig | 100.0 | |
| 1zja_A | 557 | Trehalulose synthase; sucrose isomerase, alpha-amy | 100.0 | |
| 3dhu_A | 449 | Alpha-amylase; structural genomics, hydrolase, gly | 100.0 | |
| 1cyg_A | 680 | Cyclodextrin glucanotransferase; glycosyltransfera | 100.0 | |
| 3k8k_A | 669 | Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, bet | 100.0 | |
| 3aj7_A | 589 | Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydro | 100.0 | |
| 3bmv_A | 683 | Cyclomaltodextrin glucanotransferase; glycosidase, | 100.0 | |
| 2ze0_A | 555 | Alpha-glucosidase; TIM barrel, glucoside hydrolase | 100.0 | |
| 2guy_A | 478 | Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; | 100.0 | |
| 3bc9_A | 599 | AMYB, alpha amylase, catalytic region; acarbose, t | 100.0 | |
| 1d3c_A | 686 | Cyclodextrin glycosyltransferase; alpha-amylase, p | 100.0 | |
| 1jae_A | 471 | Alpha-amylase; glycosidase, carbohydrate metabolis | 100.0 | |
| 1ji1_A | 637 | Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6 | 100.0 | |
| 1g94_A | 448 | Alpha-amylase; beta-alpha-8-barrel, 3 domain struc | 100.0 | |
| 3czg_A | 644 | Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; | 100.0 | |
| 1g5a_A | 628 | Amylosucrase; glycosyltransferase, glycoside hydro | 100.0 | |
| 3ucq_A | 655 | Amylosucrase; thermostability, amylose synthesis, | 100.0 | |
| 1r7a_A | 504 | Sucrose phosphorylase; beta-alpha-barrels, dimer, | 100.0 | |
| 2bhu_A | 602 | Maltooligosyltrehalose trehalohydrolase; alpha-amy | 100.0 | |
| 3zss_A | 695 | Putative glucanohydrolase PEP1A; alpha-glucan bios | 100.0 | |
| 1ua7_A | 422 | Alpha-amylase; beta-alpha-barrels, acarbose, greek | 100.0 | |
| 2e8y_A | 718 | AMYX protein, pullulanase; multiple domain, beta-a | 100.0 | |
| 2dh2_A | 424 | 4F2 cell-surface antigen heavy chain; TIM-barrel, | 100.0 | |
| 1gjw_A | 637 | Maltodextrin glycosyltransferase; alpha-amylase, m | 100.0 | |
| 1m7x_A | 617 | 1,4-alpha-glucan branching enzyme; alpha/beta barr | 100.0 | |
| 2wan_A | 921 | Pullulanase; hydrolase, glycoside hydrolase, polys | 100.0 | |
| 2vr5_A | 718 | Glycogen operon protein GLGX; hydrolase, glycosida | 100.0 | |
| 3m07_A | 618 | Putative alpha amylase; IDP00968, csgid, structura | 100.0 | |
| 4gqr_A | 496 | Pancreatic alpha-amylase; glycosyl hydrolase, diab | 100.0 | |
| 3k1d_A | 722 | 1,4-alpha-glucan-branching enzyme; mycobacterium t | 100.0 | |
| 3vgf_A | 558 | Malto-oligosyltrehalose trehalohydrolase; alpha/be | 100.0 | |
| 2wsk_A | 657 | Glycogen debranching enzyme; carbohydrate metaboli | 100.0 | |
| 1bf2_A | 750 | Isoamylase; hydrolase, glycosidase, debranching en | 100.0 | |
| 3aml_A | 755 | OS06G0726400 protein; starch-branching, transferas | 100.0 | |
| 2ya0_A | 714 | Putative alkaline amylopullulanase; hydrolase, gly | 100.0 | |
| 3faw_A | 877 | Reticulocyte binding protein; TIM barrel, beta bar | 100.0 | |
| 2ya1_A | 1014 | Putative alkaline amylopullulanase; hydrolase, gly | 100.0 | |
| 2fhf_A | 1083 | Pullulanase; multiple domain, beta-alpha-barrel, a | 100.0 | |
| 4aio_A | 884 | Limit dextrinase; hydrolase, pullulanase, glycosid | 100.0 | |
| 1iv8_A | 720 | Maltooligosyl trehalose synthase; beta alpha barre | 100.0 | |
| 3hje_A | 704 | 704AA long hypothetical glycosyltransferase; treha | 99.97 | |
| 3aie_A | 844 | Glucosyltransferase-SI; beta-alpha-barrels; HET: M | 99.95 | |
| 3klk_A | 1039 | Glucansucrase; native form, open conformation, mul | 99.94 | |
| 3aie_A | 844 | Glucosyltransferase-SI; beta-alpha-barrels; HET: M | 99.87 | |
| 3ttq_A | 1108 | Dextransucrase; (beta/alpha)8 barrel, transferase; | 99.87 | |
| 3klk_A | 1039 | Glucansucrase; native form, open conformation, mul | 99.84 | |
| 3ttq_A | 1108 | Dextransucrase; (beta/alpha)8 barrel, transferase; | 99.58 | |
| 3mi6_A | 745 | Alpha-galactosidase; NESG, structural genomics, PS | 98.39 | |
| 2yfo_A | 720 | Alpha-galactosidase-sucrose kinase agask; hydrolas | 98.33 | |
| 4fnq_A | 729 | Alpha-galactosidase AGAB; glycoside hydrolase, hyd | 98.11 | |
| 2xn2_A | 732 | Alpha-galactosidase; hydrolase, glycosidase; HET: | 98.02 | |
| 1esw_A | 500 | Amylomaltase; (beta,alpha)8-barrel, glucanotransfe | 98.0 | |
| 1tz7_A | 505 | 4-alpha-glucanotransferase; (beta, alpha)8- barrel | 97.97 | |
| 1x1n_A | 524 | 4-alpha-glucanotransferase; disproportionating enz | 97.93 | |
| 1zy9_A | 564 | Alpha-galactosidase; TM1192, struc genomics, joint | 97.63 | |
| 1qnr_A | 344 | Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt | 97.24 | |
| 3vmn_A | 643 | Dextranase; TIM barrel, immunoglobrin fold, greek- | 97.02 | |
| 2f2h_A | 773 | Putative family 31 glucosidase YICI; BETA8alpha8 b | 96.89 | |
| 4ba0_A | 817 | Alpha-glucosidase, putative, ADG31B; hydrolase; HE | 96.36 | |
| 3hje_A | 704 | 704AA long hypothetical glycosyltransferase; treha | 96.23 | |
| 3lpp_A | 898 | Sucrase-isomaltase; glycoside hydrolase family 31, | 96.19 | |
| 2g3m_A | 693 | Maltase, alpha-glucosidase; hydrolase, glycoside h | 96.18 | |
| 3n9k_A | 399 | Glucan 1,3-beta-glucosidase; aromatic entranceway/ | 96.04 | |
| 1x7f_A | 385 | Outer surface protein; structural genomics, unknow | 96.03 | |
| 3l4y_A | 875 | Maltase-glucoamylase, intestinal; glycoside hydrol | 95.92 | |
| 1h4p_A | 408 | Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca | 95.91 | |
| 3civ_A | 343 | Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1. | 95.81 | |
| 2p0o_A | 372 | Hypothetical protein DUF871; structural genomics, | 95.77 | |
| 3cc1_A | 433 | BH1870 protein, putative alpha-N-acetylgalactosami | 95.71 | |
| 3gyc_A | 393 | Putative glycoside hydrolase; YP_001304622.1, stru | 95.66 | |
| 1hjs_A | 332 | Beta-1,4-galactanase; 4-galactanases, family 53 gl | 95.64 | |
| 1ur4_A | 399 | Galactanase; hydrolase, beta-1, glycoside hydrolas | 95.41 | |
| 1fob_A | 334 | Beta-1,4-galactanase; B/A barrel, glycosyl hydrola | 95.38 | |
| 3nsx_A | 666 | Alpha-glucosidase; structural genomics, PSI-2, pro | 95.17 | |
| 3vup_A | 351 | Beta-1,4-mannanase; TIM barrel, digestive fluid, H | 95.03 | |
| 3pzg_A | 383 | Mannan endo-1,4-beta-mannosidase. glycosyl hydrol | 94.66 | |
| 2xvl_A | 1020 | Alpha-xylosidase, putative, XYL31A; hydrolase, gly | 94.53 | |
| 3jug_A | 345 | Beta-mannanase; TIM-barrel, glycosidase, hydrolase | 94.38 | |
| 2whl_A | 294 | Beta-mannanase, baman5; glycoside hydrolase, hydro | 94.35 | |
| 1uuq_A | 440 | Mannosyl-oligosaccharide glucosidase; hydrolase, m | 94.3 | |
| 1bqc_A | 302 | Protein (beta-mannanase); glycosyl hydrolase, fami | 94.29 | |
| 1ece_A | 358 | Endocellulase E1; glycosyl hydrolase; HET: BGC; 2. | 94.23 | |
| 3pzt_A | 327 | Endoglucanase; alpha/beta barrel, glycosyl hydrola | 94.0 | |
| 1tvn_A | 293 | Cellulase, endoglucanase G; glycoside hydrolase, C | 93.85 | |
| 1kwg_A | 645 | Beta-galactosidase; TIM barrel, glycoside hydrolas | 93.78 | |
| 3icg_A | 515 | Endoglucanase D; cellulase, xylanase, carbohydrate | 93.74 | |
| 3nco_A | 320 | Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1 | 93.74 | |
| 2c0h_A | 353 | Mannan endo-1,4-beta-mannosidase; hydrolase, signa | 93.66 | |
| 1vjz_A | 341 | Endoglucanase; TM1752, structural genomics, JCSG, | 93.65 | |
| 1edg_A | 380 | Endoglucanase A; family A, cellulases, xylanases, | 93.62 | |
| 1ceo_A | 343 | Cellulase CELC; glycosyl hydrolase, family A/5 of | 93.42 | |
| 3tty_A | 675 | Beta-GAL, beta-galactosidase; TIM barrel, glycosid | 93.32 | |
| 3ndz_A | 345 | Endoglucanase D; cellotriose, xylanase, carbohydra | 93.32 | |
| 1rh9_A | 373 | Endo-beta-mannanase; endo-beta-mannase, retaining, | 93.15 | |
| 3qho_A | 458 | Endoglucanase, 458AA long hypothetical endo-1,4-be | 92.87 | |
| 2ki0_A | 36 | DS119; beta-alpha-beta, de novo protein; NMR {Synt | 92.86 | |
| 2y8k_A | 491 | Arabinoxylanase, carbohydrate binding family 6; hy | 92.78 | |
| 3n12_A | 333 | Chitinase A, chinctu2; zinc atoms, complex, hydrol | 92.61 | |
| 1h1n_A | 305 | Endo type cellulase ENGI; hydrolase, glycosyl hydr | 92.56 | |
| 3aof_A | 317 | Endoglucanase; glycosyl hydrolase family 5, cellul | 92.53 | |
| 3l55_A | 353 | B-1,4-endoglucanase/cellulase; putative beta-1,4-e | 92.51 | |
| 2osx_A | 481 | Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel | 92.49 | |
| 3ayr_A | 376 | Endoglucanase; TIM barrel, hydrolase, carbohydrate | 92.49 | |
| 1uas_A | 362 | Alpha-galactosidase; TIM-barrel, beta-alpha-barrel | 92.42 | |
| 1wky_A | 464 | Endo-beta-1,4-mannanase; TIM barrel, catalytic dom | 92.39 | |
| 3a24_A | 641 | Alpha-galactosidase; glycoside hydrolase family 97 | 92.26 | |
| 2jep_A | 395 | Xyloglucanase; family 5, plant cell WALL, hydrolas | 92.03 | |
| 3ebv_A | 302 | Chinitase A; chitinase A, CHIA, glycosidase, struc | 91.89 | |
| 3qr3_A | 340 | Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A | 91.7 | |
| 1egz_A | 291 | Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CL | 91.69 | |
| 1g01_A | 364 | Endoglucanase; alpha/beta barrel, TIM barrel, hydr | 91.1 | |
| 3a21_A | 614 | Putative secreted alpha-galactosidase; beta-alpha- | 90.53 | |
| 2cks_A | 306 | Endoglucanase E-5; carbohydrate metabolism, polysa | 90.33 | |
| 2aam_A | 309 | Hypothetical protein TM1410; structural genomics, | 90.32 | |
| 2x2h_A | 1027 | Alpha-1,4-glucan lyase isozyme 1; anhydrofructose | 89.92 | |
| 7a3h_A | 303 | Endoglucanase; hydrolase, cellulose degradation, g | 89.83 | |
| 3poh_A | 451 | Endo-beta-N-acetylglucosaminidase F1; TIM barrel, | 89.82 | |
| 4axn_A | 328 | Chitinase C1; hydrolase; 1.68A {Serratia marcescen | 89.0 | |
| 2ebn_A | 289 | Endo-beta-N-acetylglucosaminidase F1; hydrolase(gl | 88.67 | |
| 2cho_A | 716 | Glucosaminidase, hexosaminiase; O-GLCNACASE, hydro | 88.56 | |
| 4hty_A | 359 | Cellulase; (alpha/beta)8 barrel, family 5 endogluc | 88.55 | |
| 3d3a_A | 612 | Beta-galactosidase; protein structure initiative I | 88.46 | |
| 3a5v_A | 397 | Alpha-galactosidase; beta/alpha barrel, N-glycosyl | 88.37 | |
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 88.35 | |
| 4awe_A | 387 | Endo-beta-D-1,4-mannanase; hydrolase, endo-mannana | 88.32 | |
| 2d73_A | 738 | Alpha-glucosidase SUSB; glycoside hydrolase family | 88.0 | |
| 1jak_A | 512 | Beta-N-acetylhexosaminidase; glycoside hydrolase, | 87.94 | |
| 2zxd_A | 455 | Alpha-L-fucosidase, putative; TIM barrel, hydrolas | 87.88 | |
| 1szn_A | 417 | Alpha-galactosidase; (beta/alpha)8 barrel,TWO doma | 87.35 | |
| 2wvv_A | 450 | Alpha-L-fucosidase; alpha-L-fucose, hydrolase, gly | 87.28 | |
| 2w61_A | 555 | GAS2P, glycolipid-anchored surface protein 2; glyc | 87.27 | |
| 3eyp_A | 469 | Putative alpha-L-fucosidase; structural genomics, | 86.05 | |
| 3kzs_A | 463 | Glycosyl hydrolase family 5; structural genomics, | 85.98 | |
| 1edt_A | 271 | Endo-beta-N-acetylglucosaminidase H, endo H; hydro | 85.39 | |
| 4e8d_A | 595 | Glycosyl hydrolase, family 35; TIM barrel, beta-pr | 85.34 | |
| 4ac1_X | 283 | Endo-N-acetyl-beta-D-glucosaminidase; hydrolase, g | 85.19 | |
| 3ozo_A | 572 | N-acetylglucosaminidase; beta-N-acetyl-D-hexosamin | 85.15 | |
| 3ues_A | 478 | Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydr | 84.87 | |
| 3thd_A | 654 | Beta-galactosidase; TIM-barrel domain, glycosyl hy | 84.87 | |
| 3ian_A | 321 | Chitinase; structural genomics, hydrolase, glycosi | 84.62 | |
| 1ug6_A | 431 | Beta-glycosidase; glucosidase, atomic resolution, | 83.64 | |
| 1eok_A | 290 | Endo-beta-N-acetylglucosaminidase F3; alpha/beta-b | 82.37 | |
| 3obe_A | 305 | Sugar phosphate isomerase/epimerase; structural ge | 81.99 | |
| 3lrk_A | 479 | Alpha-galactosidase 1; tetramer, GH27, glycoprotei | 81.78 | |
| 1now_A | 507 | Beta-hexosaminidase beta chain; (beta/alpha)8-barr | 81.44 | |
| 1vff_A | 423 | Beta-glucosidase; glycosyl hydrolase, membrane-bou | 81.04 | |
| 4f9d_A | 618 | Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; | 80.81 | |
| 2o9p_A | 454 | Beta-glucosidase B; family 1 glycoside hydrolase; | 80.72 | |
| 2gjx_A | 507 | Beta-hexosaminidase alpha chain; beta-hexosaminida | 80.38 |
| >1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-80 Score=614.60 Aligned_cols=402 Identities=62% Similarity=1.199 Sum_probs=344.2
Q ss_pred CceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHH
Q 014447 23 PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQ 102 (424)
Q Consensus 23 ~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~ 102 (424)
++|++|+|.|||.++++|||+||+++|+|||+||||+|||+||++++++|||++.||++||+|+|||++|||+||++||+
T Consensus 1 ~~v~~~~F~~d~~~d~~G~~~gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~ 80 (405)
T 1ht6_A 1 HQVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHG 80 (405)
T ss_dssp CCCEEECCCTTGGGCTTCHHHHHHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHH
T ss_pred CccEEEeEEcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCccccccCCCccCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred cCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 014447 103 KGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKE 182 (424)
Q Consensus 103 ~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~ 182 (424)
+||+||+|+|+||++.+|+.+.+.|+.|.+..+..+.+|...+.+.+...|.++.+++..++++.++||||++||+||++
T Consensus 81 ~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~ 160 (405)
T 1ht6_A 81 KGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRE 160 (405)
T ss_dssp TTCEEEEEECCSBCCCSEECTTSCEEECCCSSSSSTTCCCGGGBCTTCTTTCCSCSCCCSSCCCTTSCBBCTTCHHHHHH
T ss_pred CCCEEEEEECcCcccCCCCCCCCCcccCCCCCcCCCCCCCCccccCCCCCcCCCCCcccCCCCcCcCCccCcCCHHHHHH
Confidence 99999999999999999887777788887765555677776544444556766666777888999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCC--
Q 014447 183 LSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGG-- 260 (424)
Q Consensus 183 l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 260 (424)
|++++++|++++||||||+|+|++++.+||++++++.+|.++|||+|...++.+++.++|....+++.+..|+...++
T Consensus 161 i~~~~~~w~~~~gvDGfR~D~~~~~~~~f~~~~~~~~~p~~~igE~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~g~~~ 240 (405)
T 1ht6_A 161 LKEWLLWLKSDLGFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAA 240 (405)
T ss_dssp HHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHCCSCEEECCCCCCCBCTTSSBCSCCHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHhccCCCEEEEeccccCCHHHHHHHHHhhCCceEEEEeccCCcccCccccccccchhHHHHHHHHhccCccc
Confidence 999999999999999999999999999999999998889889999998765544556677653356778888876433
Q ss_pred -ceeeecccchHHHHHHhcchhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCee
Q 014447 261 -AVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTP 339 (424)
Q Consensus 261 -~~~~~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P 339 (424)
..++|||++...+..++.++...+.+.....+......|...++|++|||+.|..+....+.++.++|++++||+||+|
T Consensus 241 ~~~~vfdf~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~~fl~nHD~~r~~~~~~~~~~~~~~a~a~llt~pG~P 320 (405)
T 1ht6_A 241 SAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFPSDKVMQGYAYILTHPGIP 320 (405)
T ss_dssp SSEEEECHHHHHHHHHHTTTCGGGGSCTTSSCSSHHHHCGGGEEEESCCTTTSTTTCSSCCCGGGHHHHHHHHHHSSSEE
T ss_pred ccceeechhhHHHHHHHHhhhHHHHHhhhcccchhhhcChhhhhhccCCcCCccccccccCcHHHHHHHHHHHHhCCCcc
Confidence 3445999988888777766655555433222222233456779999999999998776666788999999999999999
Q ss_pred EEecCCCCCcchHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEECCEEEEEECCCCCCCCcCCCCcEEEEeCCcEE
Q 014447 340 CIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYA 419 (424)
Q Consensus 340 ~iyyG~~~~w~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r~~~~lv~ln~~~~~~~~~~~~~~~~~~~~~~~ 419 (424)
+||||+|++|+++++||+|++||+++|+|+.|.++++..++++++|.|+++++|++|++.+....++++|++.++++.|+
T Consensus 321 ~iy~G~e~~W~~~~~~~~Li~lR~~~~al~~g~~~~~~~~~~v~af~R~~~~lv~~N~~~~~~~~~~~~~~~~~~~~~~~ 400 (405)
T 1ht6_A 321 CIFYDHFFNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIPAGFVTSAHGNDYA 400 (405)
T ss_dssp EEEHHHHHTSSCHHHHHHHHHHHHHTTCCTTCCEEEEEEETTEEEEEETTTEEEEESSCSCCGGGSCTTCEEEEEETTEE
T ss_pred eEEcCCCcCchHHHHHHHHHHHHHhCcccccCceEEEecCCCEEEEEECCeEEEEEcCCCcccccCCCccEEEecCCcEE
Confidence 99999999999999999999999999999999999988888999999999999999997654345567899999999999
Q ss_pred EEecC
Q 014447 420 VWEKN 424 (424)
Q Consensus 420 ~~~~~ 424 (424)
||+++
T Consensus 401 v~~~~ 405 (405)
T 1ht6_A 401 VWEKN 405 (405)
T ss_dssp EEEC-
T ss_pred EEeCC
Confidence 99875
|
| >1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-66 Score=530.88 Aligned_cols=379 Identities=28% Similarity=0.500 Sum_probs=293.9
Q ss_pred CCCceEEEeecCCCCCCCCCcH-HHHHhhhhHHHHcCCCEEEeCCCC----------CCCCCCCCCcccccCCC-CCCCC
Q 014447 21 TSPALLFQGFNWESSNKAGGWY-NSLKNSIPDLSNAGITHVWLPPPS----------QSVAPQGYMPGRLYDLD-ASKYG 88 (424)
Q Consensus 21 ~~~~v~~~~f~~ds~~~~~G~~-~gi~~~L~ylk~lGv~~I~l~Pi~----------~~~~~~gY~~~d~~~id-~~~~G 88 (424)
.+++||||+|.|++..+.|||| +||+++|||||+||||+||||||+ +++.+|||+ |++|| .|+||
T Consensus 14 ~~~~vi~q~F~w~~~~~~gGd~~~gi~~~LdyLk~LGvt~IwL~Pi~e~~~~~~~~~~~~~~~GY~---~~~id~~p~~G 90 (527)
T 1gcy_A 14 GGDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYF---WHDFNKNGRYG 90 (527)
T ss_dssp GGCCCEEECCCTTHHHHSTTTHHHHHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTT---CSSSCSCSSSC
T ss_pred CCCcEEEEEEEcCCCcccCCcHHHHHHHHHHHHHhcCCCEEEeCCccccccccccCCCCCCCCCcc---cccCCCCCCCC
Confidence 4678999999999998889999 999999999999999999999999 555789999 88888 48999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC-C
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-Q 167 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~ 167 (424)
|++|||+||++||++||+||||+|+||++.+|+.. .|. . ...+|+....|.....|. +++..+..+ .
T Consensus 91 t~~dfk~Lv~~aH~~GI~VilD~V~NHt~~~~~~~--~~~--~-----~~~~~y~~~~~~~~~~~~---~~~~~~~~f~~ 158 (527)
T 1gcy_A 91 SDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDK--EIN--L-----PAGQGFWRNDCADPGNYP---NDCDDGDRFIG 158 (527)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCSSC--SCC--C-----CSSSSCBGGGSCCCSSSC---BTTBSSCCSTT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEeecCcCCCCCCc--ccc--C-----CCcchhcccccCCCCCcc---cCcccCccccc
Confidence 99999999999999999999999999999988621 122 0 011222111111112222 223333334 8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcC-CCeEEeeecCCCCCCCCCCCCCCCCC
Q 014447 168 PAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTS-PDFAVGEKWDSLSYGPDGKPDANQDG 246 (424)
Q Consensus 168 ~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~-p~~~v~E~~~~~~~~~~~~~~~~~~~ 246 (424)
++||||++||+||++|++++++|++++||||||+|+|++++.+||+++.++.+ |.+++||+|...... ....|.+..
T Consensus 159 ~~~dLn~~np~Vr~~i~~~~~~w~~~~gvDGfRlDa~~~i~~~f~~~~~~~~~~p~~~vgE~~~~~~~~--~~~~y~~~~ 236 (527)
T 1gcy_A 159 GDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEY--PNWDWRNTA 236 (527)
T ss_dssp STTBBCTTSHHHHHHHHHHHHHHHHHSCEEEEEESCGGGSCHHHHHHHHHHHCTTSEEEECCCCCGGGS--CTTSGGGGS
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHhcCCceEEEEecCCCCcc--ccccccccc
Confidence 99999999999999999999999999999999999999999999999988876 788999999753200 012333211
Q ss_pred -chhHHHHHHHhcCCceeeecccchHHHHHHhcchhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCC------
Q 014447 247 -HRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP------ 319 (424)
Q Consensus 247 -~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~------ 319 (424)
+.+.+..|+... ..+.|||.+...+..++. ..+++ .... ......|...++|++|||+.|..+...
T Consensus 237 ~~~~~~~~~~~~~--~~~~fdf~~~~~l~~~~~-~~~~l-~~~~---~~~~~~~~~~~~f~~nHD~~r~~~~~~g~~~~~ 309 (527)
T 1gcy_A 237 SWQQIIKDWSDRA--KCPVFDFALKERMQNGSI-ADWKH-GLNG---NPDPRWREVAVTFVDNHDTGYSPGQNGGQHHWA 309 (527)
T ss_dssp CHHHHHHHHHHHH--TSCEECHHHHHHHHHSCG-GGGGG-SGGG---CSSHHHHTTEEECSCCTTTSBCSSGGGBCCSSC
T ss_pred chhhHHHHHhhcc--CCceechHHHHHHHHHHH-Hhhhh-hhcC---CccccChhhceEEEeCCCCCCcccccCcccccc
Confidence 135566777643 566789987776766554 22332 1111 011123556799999999999865432
Q ss_pred CCchhHHHHHHHHHcCCCeeEEecCCCCCcchHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEE--CCEEEEEECC
Q 014447 320 FPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAI--GDRVIMKIGP 397 (424)
Q Consensus 320 ~~~~~~~~a~a~~l~~pG~P~iyyG~~~~w~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r--~~~~lv~ln~ 397 (424)
+..+++++|++++|++||+|+||||+|++|+++++||+|++|||++|+|+.|.++++..++++++|.| +++++|++|+
T Consensus 310 ~~~~~~~~a~a~~lt~~G~P~iy~G~E~~W~l~~~~~~Li~lRk~~~al~~g~~~~~~~~~~v~a~~r~~~~~~lv~~N~ 389 (527)
T 1gcy_A 310 LQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAGVRADSAISFHSGYSGLVATVSGSQQTLVVALNS 389 (527)
T ss_dssp CCGGGHHHHHHHHHHSSSEEEEEHHHHHTSSCHHHHHHHHHHHHHHTCCTTCEEEECTTSSSEEEEEECSSCEEEEEESC
T ss_pred CChhHHHHHHHHHhCCCCcceeecccccCChHHHHHHHHHHHHHhChhhcCCceEEEecCCCEEEEEecCCCeEEEEECC
Confidence 23578999999999999999999999999999999999999999999999999999888889999999 5899999999
Q ss_pred CCCCC-CcCCCCcEEEEeC--CcEEEEec
Q 014447 398 KMDIG-NLIPSDFKVAADG--TDYAVWEK 423 (424)
Q Consensus 398 ~~~~~-~~~~~~~~~~~~~--~~~~~~~~ 423 (424)
+.+.. ..+.+.|++.+++ +.++||..
T Consensus 390 ~~~~~~~v~~g~~~~~~~~~~~~~~~w~~ 418 (527)
T 1gcy_A 390 DLGNPGQVASGSFSEAVNASNGQVRVWRS 418 (527)
T ss_dssp CCCCGGGTCCSCCEEEEEETTTTEEEEEC
T ss_pred CCCCceeecCCceEEEEecCCCcEEEEEc
Confidence 75432 3334589999888 79999964
|
| >2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-65 Score=521.75 Aligned_cols=352 Identities=20% Similarity=0.322 Sum_probs=268.9
Q ss_pred ccCCCCCCceEEEeecCCCCC-------C-------------------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC
Q 014447 16 IFLPFTSPALLFQGFNWESSN-------K-------------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV 69 (424)
Q Consensus 16 ~~p~~~~~~v~~~~f~~ds~~-------~-------------------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~ 69 (424)
..|.|+++.|+||+|+ +++. + ++|||+||+++|+|||+||||+|||+||++++
T Consensus 4 ~~~~W~~~~viYqi~~-~~F~~~gd~~~d~~~~~~~~~w~~~~~~~~~~~Gdl~gi~~~LdyL~~LGv~~I~L~Pi~~~~ 82 (488)
T 2wc7_A 4 QTPDWVKHAVFYQIFP-DRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGIMEDLDYIQNLGINAIYFTPIFQSA 82 (488)
T ss_dssp CCCHHHHTCCEEEECG-GGTCCCSSCCCCSCTTCCGGGGGGCHHHHC-CCCCHHHHHHTHHHHHHHTCCEEEESCCEEEC
T ss_pred CCCCccccceEEEEcc-ccccCCCCccCCcccccccccccCCCccCccCCcCHHHHHHhhHHHHHcCCCEEEECCCCCCC
Confidence 3589999999999998 6662 1 27999999999999999999999999999999
Q ss_pred CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeec--CCCCCCCCCCCCCcccc
Q 014447 70 APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIF--EGGTSDDRLDWGPSFIC 147 (424)
Q Consensus 70 ~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~--~~~~~~~~~~w~~~~~~ 147 (424)
.+|||++.||++|| |+|||++||++||++||++|||||||+|+|||+.+|+. +.- ..+....+.+|+.....
T Consensus 83 ~~~GYd~~dy~~id-p~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~s~~~~~-----f~~~~~~~~~s~y~~~y~~~~~ 156 (488)
T 2wc7_A 83 SNHRYHTHDYYQVD-PMLGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFF-----FHDVLENGPHSPWVNWFKIEGW 156 (488)
T ss_dssp TTCTTSEEEEEEEC-GGGTHHHHHHHHHHHHHHTTCEEEEEECCSBCCSSSHH-----HHHHHHHGGGCTTGGGBCBCSS
T ss_pred CCCCCCCcCccccC-cccCCHHHHHHHHHHHHHCCCEEEEEeCCCcCCCcCHH-----HHHHHhcCCCCCCCCceeecCC
Confidence 99999999999999 99999999999999999999999999999999998751 100 00000111222211100
Q ss_pred cCCCccCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHH-HHHHH---HHhcCC-
Q 014447 148 RGDKEYSD-GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS-ITKVY---MENTSP- 221 (424)
Q Consensus 148 ~~~~~~~~-~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~-~~~~~---~~~~~p- 221 (424)
. ...+.+ ...++..+.+...+||||++||+||++|++++++|+ ++||||||+|++++++.+ ||+++ +++.+|
T Consensus 157 ~-~~~~~~~~~~~~~~~~~~~~~pdln~~np~vr~~i~~~~~~Wl-~~gvDGfR~D~~~~i~~~~~~~~~~~~~~~~~p~ 234 (488)
T 2wc7_A 157 P-LSPYNGEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYWL-KFGIDGWRLDVPFEIKTPGFWQEFRDRTKAINPE 234 (488)
T ss_dssp S-CCSSCTTSCCCBCBGGGCTTSBBBCTTSHHHHHHHHHHHHHHH-HHTCCEEEESSGGGCCCTTHHHHHHHHHHHHCTT
T ss_pred C-CCCCCCCCCCCccccCCCCCcCeeccCCHHHHHHHHHHHHHHH-HCCCCEEEEecccccChHHHHHHHHHHHHhhCCC
Confidence 0 000110 022455556778999999999999999999999999 599999999999999998 99998 445567
Q ss_pred CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcchh-------------------h
Q 014447 222 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGEL-------------------W 282 (424)
Q Consensus 222 ~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~-------------------~ 282 (424)
.++|||+|.... .|+. ..++++.++|.+...+...+.+.. .
T Consensus 235 ~~~vgE~~~~~~-------------------~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (488)
T 2wc7_A 235 AYIVGEVWGDSR-------------------QWLD-GTQFDGVMNYLFAGPTIAFAAGDRVVLEQVQSRDYQPYPPLFAA 294 (488)
T ss_dssp CEEEECCCSCCG-------------------GGCS-SSSCSEEEEHHHHHHHHHHHTGGGCCGGGCCTTTCCCCSCCCHH
T ss_pred eEEEEEecCCcH-------------------Hhhc-CCCcCceeCchHHHHHHHHHhcCccccccccccccccccCCCHH
Confidence 789999986421 1222 134666777777766666553321 1
Q ss_pred hhh----hhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCCC----------
Q 014447 283 RLK----DSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFD---------- 348 (424)
Q Consensus 283 ~~~----~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~~---------- 348 (424)
.+. ......+. ..+...++|++|||++|+.+..+.+.++.++|++++|++||+|+||||+|++
T Consensus 295 ~~~~~~~~~~~~~~~---~~~~~~~~f~~nHD~~R~~~~~~~~~~~~~~a~~~ll~~pG~P~iy~G~E~g~~~~~d~~~r 371 (488)
T 2wc7_A 295 EYATKIQEVLQLYPW---EIQLTQLNLLASHDTARLMTIAGGDIASVELSTLLLLTFPGAPSIYYGDEVGLPGGIDPDSR 371 (488)
T ss_dssp HHHHHHHHHHTSSCH---HHHTTCEECSCCTTSCCHHHHTTTCHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCC----
T ss_pred HHHHHHHHHHHhccc---hhhcceeEeccccchhhHHHhcCCcHHHHHHHHHHHHhCCCCcEEEEeeccCcCCCCCchhh
Confidence 111 11111110 0023458899999999998877655678999999999999999999999863
Q ss_pred --------c--chHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEE---CCEEEEEECCCC
Q 014447 349 --------W--GLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAI---GDRVIMKIGPKM 399 (424)
Q Consensus 349 --------w--~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r---~~~~lv~ln~~~ 399 (424)
| +++++||+|++||+++|+|+.|.++.+..++++++|.| +++++|++|.+.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~Li~lRk~~~~l~~g~~~~~~~~~~v~a~~R~~~~~~~~v~~N~~~ 435 (488)
T 2wc7_A 372 RGFPLEANWNQEIFNTHRQLITIRQTYPALRTGDYQVLYAQGQLYLFARTLGTEELIIAINAGT 435 (488)
T ss_dssp CCCTTC-CCCHHHHHHHHHHHHHHHHCTHHHHSEEEEEEEETTEEEEEEEETTEEEEEEEECSS
T ss_pred cCCCCccccCHHHHHHHHHHHHHHhhCccccCCCeEEEecCCCEEEEEEECCCCEEEEEEECCC
Confidence 3 48999999999999999999999998887788999999 678999999864
|
| >1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-63 Score=502.69 Aligned_cols=346 Identities=22% Similarity=0.299 Sum_probs=270.8
Q ss_pred eEEEeec---CCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHH
Q 014447 25 LLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101 (424)
Q Consensus 25 v~~~~f~---~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH 101 (424)
|+||+|. -|+.++++|||+||+++|+|||+||||+|||+||++++++|||++.||++|| |+|||++||++||++||
T Consensus 2 viYei~~~~F~~~~~~g~Gd~~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~GY~~~dy~~id-p~~Gt~~df~~lv~~aH 80 (441)
T 1lwj_A 2 IGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFK-AEYGSEREFKEMIEAFH 80 (441)
T ss_dssp CEEEECHHHHCCSSSSSSCCHHHHHHTHHHHHHTTCCEEEECCCEECSSSSCCSCSEEEEEC-TTTCCHHHHHHHHHHHH
T ss_pred eEEEEehHHhcCCCCCCccCHHHHHHhhHHHHHcCCCEEEeCCCcCCCCCCCCCcccccccC-cccCCHHHHHHHHHHHH
Confidence 7888884 2556677999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HcCCEEEEeeecccCCCCCCCC---------CcceeecCCCCCCCCCCCCCcccccCCCccCCC-CCCCCCCCCCCCCCC
Q 014447 102 QKGIKCLADMVINHRTAERKDG---------RGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDG-QGNDDTGEDFQPAPD 171 (424)
Q Consensus 102 ~~Gi~VilD~v~NH~~~~~~~~---------~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d 171 (424)
++||+||||+|+|||+.+|+.. ..+|+.+.+... ++...........|... .++++.+.++.++||
T Consensus 81 ~~Gi~VilD~V~NH~~~~~~~f~~~~~~~~~y~d~y~~~~~~~----~~~~~~~~~~~~~w~~~~~~~~y~~~f~~~~pd 156 (441)
T 1lwj_A 81 DSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKET----DLDERREWDGEKIWHPLEDGRFYRGLFGPFSPD 156 (441)
T ss_dssp HTTCEEEEEECTTBCCTTCHHHHHHHTTCHHHHTTBCBCCTTS----CTTCBCSSSCCBCEEECTTSCEEECTTCTTSCB
T ss_pred HCCCEEEEEeCCCcccCchHHHHHHhccCCCCcceeeecCCCC----CCcccccCCCccccccccCCceEEcccCCCCCc
Confidence 9999999999999999988511 123444433111 11100000111223221 345666778899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC------CHHHHHHHHHhcCCCeEEeeecCCCCCCCCCCCCCCCC
Q 014447 172 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY------APSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQD 245 (424)
Q Consensus 172 ln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~------~~~~~~~~~~~~~p~~~v~E~~~~~~~~~~~~~~~~~~ 245 (424)
||++||+||++|++++++|+++ ||||||+|+++++ +.+||+++.+..+.. ++||+|.+
T Consensus 157 ln~~np~V~~~l~~~~~~wl~~-gvDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~-~igE~~~~-------------- 220 (441)
T 1lwj_A 157 LNYDNPQVFDEMKRLVLHLLDM-GVDGFRFDAAKHMRDTIEQNVRFWKYFLSDLKGI-FLAEIWAE-------------- 220 (441)
T ss_dssp BCSSSHHHHHHHHHHHHHHHTT-TCCEEEETTGGGSSSSHHHHHHHHHHHTTTCCSE-EEECCCSC--------------
T ss_pred cCCCCHHHHHHHHHHHHHHHhC-CCCEEEEeChhhhccCCccHHHHHHHHHHHhHhh-EEEccCCC--------------
Confidence 9999999999999999999995 9999999999999 788999997766655 99999863
Q ss_pred CchhHHHHHHHhcCCceeeecccchHHHHHHhc-chhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCC-ch
Q 014447 246 GHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ-GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP-SD 323 (424)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~-~~ 323 (424)
...+..|.. ++++.|+|++...+..++. ++...+......... ..+...++|++|||++|..+..+.+ .+
T Consensus 221 --~~~~~~y~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~fl~nHD~~R~~~~~~~~~~~ 292 (441)
T 1lwj_A 221 --ARMVDEHGR---IFGYMLNFDTSHCIKEAVWKENTRVLIESIERAVI---AKDYLPVNFTSNHDMSRLASFEGGFSKE 292 (441)
T ss_dssp --HHHHHHHHH---HHSEEECHHHHHHHHHHHHTTCSHHHHHHHHHHTS---SCSSEEEEESCCTTSCCGGGTTTCCCHH
T ss_pred --HHHHHHHHH---hCCEeEehHHHHHHHHhhccCCHHHHHHHHHHHhc---cCCCceeeeccCCCCCCcccccCCcHHH
Confidence 344556654 4678899998887776553 332222221110000 1234568999999999998887655 67
Q ss_pred hHHHHHHHHHcCCCeeEEecCCCC------------------Cc----------------------------------ch
Q 014447 324 KVMLGYAYILTHPGTPCIFYDHFF------------------DW----------------------------------GL 351 (424)
Q Consensus 324 ~~~~a~a~~l~~pG~P~iyyG~~~------------------~w----------------------------------~l 351 (424)
+.++|++++|++||+|+||||+|+ +| ++
T Consensus 293 ~~~~a~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~R~~m~W~~~~~~g~~~~w~~~~~~~~~~~~~v~~q~~~~~~l 372 (441)
T 1lwj_A 293 KIKLSISILFTLPGVPLVFYGDELGMKGVYQKPNTEVVLDPFPWNESMCVEGQTFWKWPAYNGPFSGISVEYQKRDPDSI 372 (441)
T ss_dssp HHHHHHHHHHTSSSEEEEETTTTTTCCCCCCSSCGGGGSCCCCSSSSSCSTTCCCSSCCSSCCSSSSCSHHHHTTCTTSH
T ss_pred HHHHHHHHHHhCCCceEEEchHhhCCCCCCCCCCCccccCCcccccCCCCCCCCCCCCcccccccccCCHHHhhcCcHHH
Confidence 899999999999999999999863 35 26
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEE---CCEEEEEECCCC
Q 014447 352 KEAISKLAAVRNRNGINTASRVNILASDADVYIAAI---GDRVIMKIGPKM 399 (424)
Q Consensus 352 ~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r---~~~~lv~ln~~~ 399 (424)
+++||+|++||+++|+|+.|.++.+..++++++|.| +++++|++|.+.
T Consensus 373 ~~~~~~L~~lR~~~~al~~g~~~~~~~~~~v~a~~R~~~~~~~lvv~N~~~ 423 (441)
T 1lwj_A 373 LSHTLGWTRFRKENQWIDRAKLEFLCKEDKFLVYRLYDDQHSLKVFHNLSG 423 (441)
T ss_dssp HHHHHHHHHHHHHTGGGTTCEEEEEEECSSEEEEEEEETTEEEEEEEECSS
T ss_pred HHHHHHHHHHHhCChhhhcCceEEEecCCCEEEEEEEeCCcEEEEEEECCC
Confidence 899999999999999999999998888889999999 457888888754
|
| >4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-64 Score=533.21 Aligned_cols=355 Identities=17% Similarity=0.239 Sum_probs=273.1
Q ss_pred hccCCCCCCceEEEeecCCCCCC---------------------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCC
Q 014447 15 AIFLPFTSPALLFQGFNWESSNK---------------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQG 73 (424)
Q Consensus 15 ~~~p~~~~~~v~~~~f~~ds~~~---------------------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~g 73 (424)
...|+|+++.|+||+|. +++.+ ++|||+||+++|||||+||||+|||+||++++++||
T Consensus 217 ~~~p~W~~~~viYqI~p-~rF~~~~~~n~~~~~~~w~~~~~~~~~gGdl~Gi~~kLdyLk~LGvt~IwL~Pi~~s~~~~G 295 (696)
T 4aee_A 217 VDKPRWYMGTVYYQIFI-DSFDNGDPNNDPPNRIKKTVPREYGYYGGDLAGIMKHIDHLEDLGVETIYLTPIFSSTSYHR 295 (696)
T ss_dssp CSSCCTTSSCCEEEECG-GGTCCCCGGGCCSSCCCCCSSCCSSCCCCCHHHHHTTHHHHHHHTCCEEEECCCEEESSSSC
T ss_pred CCCcchhhcCeEEEEeh-HHhcCCCCCCCccccccccCCcccccCCcCHHHHHHHhHHHHHcCCCEEEECCcccCCCCCC
Confidence 34799999999999997 54432 589999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCC-----------CCCcceeecCCCCCC------
Q 014447 74 YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK-----------DGRGIYCIFEGGTSD------ 136 (424)
Q Consensus 74 Y~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~-----------~~~~~~~~~~~~~~~------ 136 (424)
|++.||++|| |+|||++||++||++||++|||||||+|+||||.+|+ .+..+|+.+.+....
T Consensus 296 Yd~~Dy~~id-p~~Gt~~df~~Lv~~aH~~GikVilD~V~NHts~~~~~f~~~~~~~~~s~y~dwy~~~~~~~~~~~~~~ 374 (696)
T 4aee_A 296 YDTIDYKSID-KYLGTMEDFEKLVQVLHSRKIKIVLDITMHHTNPCNELFVKALREGENSPYWEMFSFLSPPPKEIVELM 374 (696)
T ss_dssp CSEEEEEEEC-GGGCCHHHHHHHHHHHHHTTCEEEEEECSSEECTTSHHHHHHHHHCTTSTTGGGBCBCSCCCHHHHHHH
T ss_pred cCcccccccC-cccCCHHHHHHHHHHHHHCCCEEEEeccccccCccCHHHHHHHhcCCCCCCCCceEecCCCCccccccc
Confidence 9999999999 9999999999999999999999999999999998874 112233333221000
Q ss_pred ----CCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHH
Q 014447 137 ----DRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT 212 (424)
Q Consensus 137 ----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~ 212 (424)
...+|..... .....|.....+|..+.+...+||||++||+||++|++++++|+ ++||||||||+|++++.+||
T Consensus 375 ~~~~~~~~~~s~~~-~~~~~~~~~~~~y~~~~~~~~~pdLN~~np~Vr~~i~~~~~~Wl-~~GvDGfRlDaa~~i~~~f~ 452 (696)
T 4aee_A 375 LKYIDGEECRSREL-YKLDYFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYFIDITKFWI-DKGIDGFRIDVAMGIHYSWM 452 (696)
T ss_dssp HHHHSSSSCCGGGG-GGSHHHHHSCCSBCBGGGCTTCEEBCTTCHHHHHHHHHHHHHHH-TTTCCEEEETTGGGSCHHHH
T ss_pred ccccCCCccccccc-cccccccCCCCceeeecCCCCchhhcCCCHHHHHHHHHHHHHHH-hCCCCEEEEechhhCCHHHH
Confidence 0011110000 00001111234666677889999999999999999999999999 59999999999999999999
Q ss_pred HHH---HHhcCC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc---hhhh--
Q 014447 213 KVY---MENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG---ELWR-- 283 (424)
Q Consensus 213 ~~~---~~~~~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~---~~~~-- 283 (424)
+++ +++.+| .+++||+ ... .|+. ..+++++++|++...+...+.+ ....
T Consensus 453 ~~~~~~v~~~~p~~~~igE~-~~~--------------------~~l~-~~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~ 510 (696)
T 4aee_A 453 KQYYEYIKNTYPDFLVLGEL-AEN--------------------PRIY-MDYFDSAMNYYLRKAILELLIYKRIDLNEFI 510 (696)
T ss_dssp HHHHHHHHHHCTTCEEEECC-CSC--------------------GGGT-TTTCSEEBCHHHHHHHHHHHTSCCSCHHHHH
T ss_pred HHHHHHHHhhCCCcEEEecc-cch--------------------hhhc-CCccceEECcHHHHHHHHHHhcCCCCHHHHH
Confidence 998 445577 7899998 221 1222 2457788999888777766532 1222
Q ss_pred --hhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC--------------
Q 014447 284 --LKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF-------------- 347 (424)
Q Consensus 284 --~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~-------------- 347 (424)
+.......+.. .....++|++|||++|..+..+.+. ++++|++++|++||+|+||||+|+
T Consensus 511 ~~l~~~~~~~~~~---~~~~~~nfl~nHD~~R~~s~~~~~~-~~kla~a~llt~pG~P~IYyGdE~G~~~~~dp~~R~~~ 586 (696)
T 4aee_A 511 SRINNVYAYIPHY---KALSLYNMLGSHDVPRIKSMVQNNK-LLKLMYVLIFALPGSPVIYYGDEIGLEGGRDPDNRRPM 586 (696)
T ss_dssp HHHHHHHTTSCHH---HHHHCEECSCCTTSCCHHHHHCCHH-HHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTTTCCCC
T ss_pred HHHHHHHHhcchh---hhhheeEecCCCCCCeehhhcCCcH-HHHHHHHHHHhCCCceEEEecccccccCCCCccccCCc
Confidence 22211111110 0123488999999999988766333 899999999999999999999864
Q ss_pred Cc-------chHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEE---CCEEEEEECCCC
Q 014447 348 DW-------GLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAI---GDRVIMKIGPKM 399 (424)
Q Consensus 348 ~w-------~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r---~~~~lv~ln~~~ 399 (424)
+| +++++||+|++||+++++|+.|.++++..++++++|.| +++++|++|.+.
T Consensus 587 ~W~~~~~~~~l~~~~k~Li~lRk~~~al~~g~~~~~~~~~~v~af~R~~~~~~~lVv~N~s~ 648 (696)
T 4aee_A 587 IWDRGNWDLELYEHIKKLIRIYKSCRSMRHGYFLVENLGSNLLFIKRWINNEEIIFLLNVSS 648 (696)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHCHHHHSCEEEEEECSTTEEEEEEEETTEEEEEEEECSS
T ss_pred CCCCCCCchHHHHHHHHHHHHHhhCHHhcCCcEEEEecCCCEEEEEEEcCCCEEEEEEECCC
Confidence 46 48999999999999999999999999888899999999 568889999864
|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-63 Score=508.27 Aligned_cols=349 Identities=20% Similarity=0.330 Sum_probs=268.7
Q ss_pred CCCCCceEEEeecCCCC-C--C------C----------------CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCC
Q 014447 19 PFTSPALLFQGFNWESS-N--K------A----------------GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQG 73 (424)
Q Consensus 19 ~~~~~~v~~~~f~~ds~-~--~------~----------------~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~g 73 (424)
.|+++.|+||+|. |++ . + + +|||+||+++|+|||+||||+||||||++++.+||
T Consensus 2 ~W~~~~viYqi~~-~~F~~~gd~~~~~~g~~~~~~~~~~~~~~~~~G~~~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~g 80 (475)
T 2z1k_A 2 AWYEGAFFYQIFP-DRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTLWGVAEKLPYLLDLGVEAIYLNPVFASTANHR 80 (475)
T ss_dssp CTTSSCCEEEECG-GGSCCCSCCCSSCCCSCCCCTTSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEEESSTTC
T ss_pred CcccCceEEEEcc-CeecCCCCcccCCCccccccccCCCCccccCCCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCC
Confidence 5999999999998 665 1 2 3 79999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCcc
Q 014447 74 YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEY 153 (424)
Q Consensus 74 Y~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 153 (424)
|++.||++|| |+|||++|||+||++||++||+||||+|+||++.+|+.... ...++....+.+|+....... ..+
T Consensus 81 Y~~~dy~~id-p~~Gt~~df~~lv~~~h~~Gi~VilD~V~NH~~~~~~~f~~---~~~~g~~s~y~~~y~~~~~~~-~~~ 155 (475)
T 2z1k_A 81 YHTVDYFQVD-PILGGNEALRHLLEVAHAHGVRVILDGVFNHTGRGFFAFQH---LMENGEQSPYRDWYHVKGFPL-KAY 155 (475)
T ss_dssp CSEEEEEEEC-GGGTCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHH---HHHHGGGCTTGGGBCBCSSSC-CTT
T ss_pred cCCCCcCccC-cccCCHHHHHHHHHHHHHCCCEEEEEEecccccCCCHHHHH---HHhcCCCCCCcceeecCCCCC-cCC
Confidence 9999999999 99999999999999999999999999999999988751000 000001111122321110000 001
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHH-HHHHH---HHhcCC-CeEEeee
Q 014447 154 SDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS-ITKVY---MENTSP-DFAVGEK 228 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~-~~~~~---~~~~~p-~~~v~E~ 228 (424)
. +..++..+.+...+||||++||+||++|++++++|+ ++||||||+|++++++.+ ||+++ +++.+| .+++||+
T Consensus 156 ~-~~~~y~~~~~~~~~pdln~~np~v~~~i~~~~~~w~-~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~p~~~~igE~ 233 (475)
T 2z1k_A 156 T-AHPNYEAWWGNPELPKLKVETPAVREYLLAVAEHWI-RFGVDGWRLDVPNEIPDPTFWREFRQRVKGANPEAYIVGEI 233 (475)
T ss_dssp S-SSCSBCBGGGCTTSBBBCTTSHHHHHHHHHHHHHHH-HHTCCEEEESSGGGCCCHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred C-CCCCccccCCCCCcCccccCCHHHHHHHHHHHHHHH-HCCCCEEeecccccCCHHHHHHHHHHHHhhcCCCcEEEEEe
Confidence 0 123555566778999999999999999999999999 599999999999999998 99998 445567 7899999
Q ss_pred cCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcchh-------------------hhhh----
Q 014447 229 WDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGEL-------------------WRLK---- 285 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~-------------------~~~~---- 285 (424)
|.... .|+. ..++++.++|.+...+...+.+.. ..+.
T Consensus 234 ~~~~~-------------------~~~~-~~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 293 (475)
T 2z1k_A 234 WEEAD-------------------FWLQ-GDMFDAVMNYPLARAVLGFVGGEALDRDLAAQTGLGRIEPLQALAFSHRLE 293 (475)
T ss_dssp SSCCS-------------------GGGS-SSSCSEEBCHHHHHHHHHHHHGGGSCHHHHTTSTTCSCCCCCHHHHHHHHH
T ss_pred cCCcc-------------------cccc-CCCcCeeeChhHHHHHHHHHhCCccccccccccccccccCCCHHHHHHHHH
Confidence 96422 1221 234667788887777666553321 1111
Q ss_pred hhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC--------------Cc--
Q 014447 286 DSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF--------------DW-- 349 (424)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~--------------~w-- 349 (424)
......+. ..+...++|++|||++|+.+..+.+.++.++|++++|++||+|+||||+|+ +|
T Consensus 294 ~~~~~~~~---~~~~~~~~f~~nHD~~R~~~~~~~~~~~~~~a~a~ll~~pG~P~iy~G~E~g~~~~~d~~~r~~~~W~~ 370 (475)
T 2z1k_A 294 DLFGRYRP---EVVRAQMNLLTSHDTPRLLSLMRGSVERARLALALLFLLPGNPTVYYGEEVGMAGGKDPENRGGMVWEE 370 (475)
T ss_dssp HHTTSSCH---HHHTTCEECSCCTTSCCHHHHTTTCHHHHHHHHHHHTTSSSEEEEETTGGGTCCCCSTTTTCCCCCCCG
T ss_pred HHHHhccc---hhhhhheeeccCCchhhHHHhcCCcHHHHHHHHHHHHhCCCCCEEEeecccCcCCCCChhhccCCCCCc
Confidence 11111100 012345899999999999887765567899999999999999999999864 46
Q ss_pred -----chHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEECCEEEEEECCCC
Q 014447 350 -----GLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKM 399 (424)
Q Consensus 350 -----~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r~~~~lv~ln~~~ 399 (424)
+++++||+|++||+++|+|+.|.++++..++++++|.| ++++|++|.+.
T Consensus 371 ~~~~~~l~~~~~~Li~lRk~~~~l~~g~~~~~~~~~~v~a~~R-~~~lv~~N~~~ 424 (475)
T 2z1k_A 371 ARWQKDLRETVKRLARLRKEHPALRTAPYLRIYAQDGHLAFAR-GPYLAVVNASP 424 (475)
T ss_dssp GGSCHHHHHHHHHHHHHHHHCTHHHHSCCEEEEEETTEEEEEE-TTEEEEEECSS
T ss_pred ccccHHHHHHHHHHHHHHhcCHhhcCCceEEEecCCCEEEEEE-CeEEEEEECCC
Confidence 48899999999999999999999999888889999999 88999999864
|
| >1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-63 Score=509.52 Aligned_cols=354 Identities=21% Similarity=0.354 Sum_probs=269.4
Q ss_pred CCCceEEEeec---CCCCCCCCCcHHHHHhhhhHH--------HHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCC
Q 014447 21 TSPALLFQGFN---WESSNKAGGWYNSLKNSIPDL--------SNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGS 89 (424)
Q Consensus 21 ~~~~v~~~~f~---~ds~~~~~G~~~gi~~~L~yl--------k~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt 89 (424)
.++.|+||+|. -|+.++++|||+||+++|||| |+||||+|||+||++++.+|||++.||++|| |+|||
T Consensus 2 ~~~~viYqi~~~~F~~~~~~g~Gdl~gi~~~LdyL~~~~~~~~~~LGv~~I~L~Pi~~~~~~~GYd~~dy~~id-p~~Gt 80 (488)
T 1wza_A 2 EKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKIN-PDYGT 80 (488)
T ss_dssp CCCCCEEEECGGGSCCSSSSSCCCHHHHHHTHHHHCCSCTTCCSSCCCSEEEECCCEECSSSSCCSCSEEEEEC-GGGCC
T ss_pred CCCcEEEEEEChhhcCCCCCCcCCHHHHHHhhhhhhccccchhhhcCccEEEECCcccCCCCCCcCcccccccC-cccCC
Confidence 46789999996 144556789999999999999 9999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCC----------CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGN 159 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~----------~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 159 (424)
++||++||++||++||+||||+|+|||+.+|+. +..+|+.+.+..+ +|..... .....|......
T Consensus 81 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~y~d~y~~~~~~~----~~~~~~~-~~~~~w~~~~~~ 155 (488)
T 1wza_A 81 LEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDT----DTKETKL-DGGRVWHYSPTG 155 (488)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCC----CCCBCSS-SCBCSEEEETTE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccccccCccHhhhhhhcCCCCCCcCeeecCCCCC----CCCCccc-cCCCcccccCCc
Confidence 999999999999999999999999999998841 1234444443110 1111000 011122211123
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH--------HHHHHHHH---hcCCCeEEeee
Q 014447 160 DDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP--------SITKVYME---NTSPDFAVGEK 228 (424)
Q Consensus 160 ~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~--------~~~~~~~~---~~~p~~~v~E~ 228 (424)
+..+.++.++||||++||+||++|++++++|+++ ||||||+|+++++.+ +||+++.+ +.+|.++|||+
T Consensus 156 ~~~~~f~~~~pdln~~np~Vr~~i~~~~~~Wl~~-gvDGfR~Da~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~vgE~ 234 (488)
T 1wza_A 156 MYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLKQ-GVDGFRLDGAMHIFPPAQYDKNFTWWEKFRQEIEEVKPVYLVGEV 234 (488)
T ss_dssp EEECSSCTTSCBBCTTSHHHHHHHHHHHHHHHHT-TCCEEEEECCCTTSCGGGTTHHHHHHHHHHHHHTTTSCCEEEEEC
T ss_pred eEEeccCCCCcccccCCHHHHHHHHHHHHHHHHc-CCCChhHhhHhhhccccCcchHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 4556778999999999999999999999999995 999999999999974 79998844 45677799999
Q ss_pred cCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh-cchhhhhh----hhcCCCCCCcCcCCCcce
Q 014447 229 WDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLK----DSNGKPPGFIGILPQNAV 303 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~ 303 (424)
|.+ ...+..|.. .+++++|+|++...+...+ .+....+. ......+...+..+...+
T Consensus 235 ~~~----------------~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 296 (488)
T 1wza_A 235 WDI----------------SETVAPYFK--YGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYIDA 296 (488)
T ss_dssp CSC----------------HHHHGGGGT--TTCSEEBCHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHTCTTSCCCB
T ss_pred CCC----------------HHHHHHHHh--cCCCEEECHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccccccceee
Confidence 963 333444543 2578899999887765544 22211111 110000000000122347
Q ss_pred ecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC---------------Cc-------------------
Q 014447 304 TFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF---------------DW------------------- 349 (424)
Q Consensus 304 ~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~---------------~w------------------- 349 (424)
+|++|||+.|..+.++.+.++.++|++++|++||+|+||||||+ +|
T Consensus 297 ~fl~nHD~~R~~~~~~~~~~~~~la~~~llt~pG~P~iy~G~E~G~~~~~~d~~~R~pm~w~~~~~~~~~~w~~~~~~~~ 376 (488)
T 1wza_A 297 PFLTNHDQNRILDQLGQDRNKARVAASIYLTLPGNPFIYYGEEIGMRGQGPHEVIREPFQWYNGSGEGETYWEPAMYNDG 376 (488)
T ss_dssp CBSCCTTSCCHHHHTTTCHHHHHHHHHHHTTSSSCCEEETTGGGTCCCCSSHHHHTCCCCCSSSCCTTCCCSSCCTTTTT
T ss_pred eeccCCCcchhhhhhcCCHHHHHHHHHHHHhCCCCcEEEechhcCccCCCCCCCCcCCCCCCccCCCCCCCCCCCCcccc
Confidence 89999999999887765667899999999999999999999863 46
Q ss_pred ------------chHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEE---CCEEEEEECCCC
Q 014447 350 ------------GLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAI---GDRVIMKIGPKM 399 (424)
Q Consensus 350 ------------~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r---~~~~lv~ln~~~ 399 (424)
+++++||+|++||+++|+|+.|.++.+..++++++|.| +++++|++|.+.
T Consensus 377 ~~~v~~q~~~~~~~~~~~~~Li~lRk~~~al~~G~~~~~~~~~~v~a~~R~~~~~~~~v~~N~s~ 441 (488)
T 1wza_A 377 FTSVEQEEKNLDSLLNHYRRLIHFRNENPVFYTGKIEIINGGLNVVAFRRYNDKRDLYVYHNLVN 441 (488)
T ss_dssp TCCHHHHTTCTTSHHHHHHHHHHHHHHCTHHHHSEEEEECCCTTEEEEEEECSSCEEEEEEECSS
T ss_pred cccHhhhccCcHHHHHHHHHHHHHHhcChHhhCCeeEEEcCCCcEEEEEEECCCceEEEEEECCC
Confidence 37899999999999999999999988887889999999 568999999753
|
| >4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-64 Score=532.30 Aligned_cols=355 Identities=18% Similarity=0.253 Sum_probs=264.7
Q ss_pred cCCCCCCceEEEeecCCCCCC--------------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCC
Q 014447 17 FLPFTSPALLFQGFNWESSNK--------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDL 82 (424)
Q Consensus 17 ~p~~~~~~v~~~~f~~ds~~~--------------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~i 82 (424)
.|+|++++|+||+|. +++.+ +||||+||++||||||+||||+||||||++++++|||+++||++|
T Consensus 200 ~P~W~~~aViYqI~p-~~F~~~~~~~g~~~~~~~~~gGdl~Gi~~kLdYLk~LGvt~I~L~Pif~s~~~~GYd~~dy~~i 278 (645)
T 4aef_A 200 FPTWVIDRVFYQIMP-DKFARSRKIQGIAYPKDKYWGGDLIGIKEKIDHLVNLGINAIYLTPIFSSLTYHGYDIVDYFHV 278 (645)
T ss_dssp CCGGGGGCCEEEECH-HHHCCCSSCC---------CCCCHHHHHHTHHHHHHHTCCEEEECCCEEESSTTCSSEEEEEEE
T ss_pred CChhHcCCEEEEEec-chhcCCCCCCcccCCcCcCCCcCHHHHHHhhHHHHHcCCCEEEECCCCCCCCCCCcCccCCCcc
Confidence 599999999999996 44322 369999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCC-----------CCcceeecCCCCCCCCCCCCCcccccCCC
Q 014447 83 DASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-----------GRGIYCIFEGGTSDDRLDWGPSFICRGDK 151 (424)
Q Consensus 83 d~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~-----------~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 151 (424)
| |+|||++||++||++||++||+||||+|+||||.+|+. +..+|+.+.+.. ....++..... ...
T Consensus 279 d-p~~Gt~~df~~LV~~aH~~GI~VIlD~V~NHts~~h~wf~~~~~~~~~s~~~d~y~~~~~~-~~~~~~~~~~~--~~~ 354 (645)
T 4aef_A 279 A-RRLGGDRAFVDLLSELKRFDIKVILDGVFHHTSFFHPYFQDVVRKGENSSFKNFYRIIKFP-VVSKEFLQILH--SKS 354 (645)
T ss_dssp C-GGGTCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHHSTTCTTGGGBCBSSSS-CSCTTHHHHHH--HSC
T ss_pred C-cccCCHHHHHHHHHHhhhcCCEEEEEecccccccCCchhhhHhhcCCCCCcccccEeccCC-CcccccccccC--CCc
Confidence 9 99999999999999999999999999999999998851 112222222110 00000000000 001
Q ss_pred ccCC-------CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCC-Ce
Q 014447 152 EYSD-------GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSP-DF 223 (424)
Q Consensus 152 ~~~~-------~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p-~~ 223 (424)
.|.. ....+........+||||++||+||+++++++++|++ +||||||+|++++++++||+.+.+..++ .+
T Consensus 355 ~w~~~~~~~~~~~~~y~~~~~~~~~pdLn~~np~V~~~~~~~~~~Wl~-~gvDGfR~D~a~~i~~~f~~~~~~~~~~~~~ 433 (645)
T 4aef_A 355 SWEEKYKKIKSLGWNYESFFSVWIMPRLNHDNPKVREFIKNVILFWTN-KGVDGFRMDVAHGVPPEVWKEVREALPKEKY 433 (645)
T ss_dssp GGGTTHHHHHHHCCSBCEETTEEEEEBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCHHHHHHHHHHSCTTCE
T ss_pred ccccccccccccccccccccccccCccccccCHHHHHHHHHHHHHHHh-cCCCEEEeccccccchhHHHHHHhhhhcccc
Confidence 1110 0112223334457899999999999999999999998 8999999999999999999999888777 77
Q ss_pred EEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch---hhhhhhhcCCCCCCcCcCCC
Q 014447 224 AVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLKDSNGKPPGFIGILPQ 300 (424)
Q Consensus 224 ~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 300 (424)
++||++.... .++ .......+++.+...+...+... ...+..............+.
T Consensus 434 ~~gE~~~~~~-------------------~~~--~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (645)
T 4aef_A 434 LIGEVMDDAR-------------------LWL--FDKFHGVMNYRLYDAILRFFGYEEITAEEFLNELELLSSYYGPAEY 492 (645)
T ss_dssp EEECCCSCCG-------------------GGT--TTTCSEEBCHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHGGGGG
T ss_pred ccccccccch-------------------hhh--ccccceecchhHHHHHHHhhhccccchHHHHHHHHHHhhhcccccc
Confidence 9999986532 011 12345566666665555544221 11111100000000000123
Q ss_pred cceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC-----------------Cc-------chHHHHH
Q 014447 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF-----------------DW-------GLKEAIS 356 (424)
Q Consensus 301 ~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~-----------------~w-------~l~~~~~ 356 (424)
..++|++|||++|..+..+ +.+++++|++++||+||+|+||||||+ +| ++++++|
T Consensus 493 ~~~~fl~nHD~~R~~s~~g-d~~~~~~a~a~llt~pG~P~iyyGdE~G~~~~~~~~~~~~R~pm~W~~~~~~~~l~~~~r 571 (645)
T 4aef_A 493 LMYNFLDNHDVERFLDIVG-DKRKYVCALVFLMTYKGIPSLFYGDEIGLRGINLQGMESSRAPMLWNEEEWDQRILEITK 571 (645)
T ss_dssp GCBCCSCCTTSCCHHHHHC-CHHHHHHHHHHHHHSSSBCEEETTGGGTCCCEEETTEEESCCCCCCCGGGSCHHHHHHHH
T ss_pred ccccccCCCCCcccccccC-CHHHHHHHHHHHHHcCCCcEEECChhhCCCCCCCCCCccccCCCCCCCccccHHHHHHHH
Confidence 3578999999999988765 567899999999999999999999964 46 3899999
Q ss_pred HHHHHHHhcCCCCCCCeEEEecCCCEEEEEE---CCEEEEEECCCC
Q 014447 357 KLAAVRNRNGINTASRVNILASDADVYIAAI---GDRVIMKIGPKM 399 (424)
Q Consensus 357 ~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r---~~~~lv~ln~~~ 399 (424)
+|++|||++|+|+.|.++.+..++++++|.| +++++|++|.+.
T Consensus 572 ~Li~lRk~~paL~~G~~~~~~~~~~v~af~R~~~~~~~lVv~N~s~ 617 (645)
T 4aef_A 572 TLVKIRKNNKALLFGNFVPVKFKRKFMVYKREHMGERTIVAINYSN 617 (645)
T ss_dssp HHHHHHHTCHHHHHCEEEEEEEETTEEEEEEEETTEEEEEEEECSS
T ss_pred HHHHHHhcCHHHhcCceEEEEcCCCEEEEEEEeCCCEEEEEEECCC
Confidence 9999999999999999999999999999999 568899999853
|
| >3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-63 Score=516.85 Aligned_cols=359 Identities=18% Similarity=0.287 Sum_probs=270.5
Q ss_pred cCCCCCCceEEEeecCCCCC-----------------------CCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC----
Q 014447 17 FLPFTSPALLFQGFNWESSN-----------------------KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV---- 69 (424)
Q Consensus 17 ~p~~~~~~v~~~~f~~ds~~-----------------------~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~---- 69 (424)
...|.+..||||+|. |.+. -+||||+||+++|||||+||||+|||+||++++
T Consensus 100 ~~~~~~~~viY~i~~-drF~~gd~~nd~~~~~~~~~~~~~~~~~~gGdl~gi~~~Ldyl~~LGv~aI~l~Pi~~~~~~~~ 178 (601)
T 3edf_A 100 RQGFGPGDAIYQIMP-DRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIAGLGFTQLWPTPLVENDAAAY 178 (601)
T ss_dssp CCCCCTTCCEEEECH-HHHCCSCGGGSSCTTCSCCCCTTSTTSCCCCCHHHHHHTHHHHHHTTCCEEEESCCEECCCSSS
T ss_pred cCCCCccCeEEEEeh-HHhcCCCCCcCcCcCcccccCccccccccCcCHHHHHHHHHHHHHcCCCEEEECccccCCCCCC
Confidence 356888999999994 2211 158999999999999999999999999999976
Q ss_pred CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCC----CcceeecCCCCCCCCCCCCCcc
Q 014447 70 APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDG----RGIYCIFEGGTSDDRLDWGPSF 145 (424)
Q Consensus 70 ~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~----~~~~~~~~~~~~~~~~~w~~~~ 145 (424)
++|||++.||++|| |+|||++||++||++||++||+||||+|+||||.+|+.. ..+|+.+.++ ....+|....
T Consensus 179 ~~~GY~~~dy~~id-p~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~p~~dw~~~~~~--~~~~~~~~~~ 255 (601)
T 3edf_A 179 SYHGYAATDHYRID-PRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGK--FVPTQHHRVA 255 (601)
T ss_dssp GGGCCSCSEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSGGGGSCSSTTSBGGGGS--CCBCCCCGGG
T ss_pred CCCCcCcccccccc-ccCCCHHHHHHHHHHHHHcCCEEEEEECCcccCCcchhhhhCCccCceeeCCC--CCCCcccccc
Confidence 45999999999999 999999999999999999999999999999999988521 1223322111 0011111000
Q ss_pred cccCCCccCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHH---HhcC
Q 014447 146 ICRGDKEYSDGQ--GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTS 220 (424)
Q Consensus 146 ~~~~~~~~~~~~--~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~---~~~~ 220 (424)
. .+ .+.... .....+++..++||||++||+||++|++++++|++++||||||+|++++++.+||+++. ++.+
T Consensus 256 ~-~d--~~~~~~~~~~~~~~wf~~~lpdLN~~np~V~~~l~~~~~~Wi~~~GVDGfRlD~~~~~~~~f~~~~~~~v~~~~ 332 (601)
T 3edf_A 256 V-QD--PYAAQADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLTEYTRRLMAEY 332 (601)
T ss_dssp G-GC--TTCCHHHHHHHHHSBSSTTSCBBCTTSHHHHHHHHHHHHHHHHHHTCSEEEESSGGGSCHHHHHHHHHHHHHHC
T ss_pred c-cC--CCCccccccccccccccccccccccCCHHHHHHHHHHHHHHHhhcCCCEEEeeccccCCHHHHHHHHHHHHHhC
Confidence 0 00 000000 00011235689999999999999999999999997799999999999999999999984 4456
Q ss_pred C-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHh-------cCCceeeecccchHHHHHHhcch-----hhhhhhh
Q 014447 221 P-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-------AGGAVAAFDFTTKGILQAAVQGE-----LWRLKDS 287 (424)
Q Consensus 221 p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~df~~~~~~~~~~~~~-----~~~~~~~ 287 (424)
| .+++||+|... ...+..|... ..++.++++|++...+..++.+. +..+...
T Consensus 333 p~~~~vgE~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~~v~nf~~~~~l~~~~~~~~~~~~~~~l~~~ 397 (601)
T 3edf_A 333 PRLNMVGQEWSTR---------------VPVVARWQRGKANFDGYTSHLPSLMDFPLVDAMRNALSKTGEENGLNEVYET 397 (601)
T ss_dssp TTCEEEECCCCSC---------------HHHHHTTSTTCCCTTCCCCCCCEEBCHHHHHHHHHHHHCTTSSSTTHHHHHH
T ss_pred CCeEEEeeecCCc---------------hHHHhhhhccccccccccccCCeEEChHHHHHHHHHHhccchhhHHHHHHHH
Confidence 7 78999999642 1222223221 23567889999988888877543 2233222
Q ss_pred cCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC--------------------
Q 014447 288 NGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF-------------------- 347 (424)
Q Consensus 288 ~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~-------------------- 347 (424)
... ......+...++|++|||++|..+..+.+.+++++|++++|++||+|+||||+|+
T Consensus 398 ~~~--~~~~~~~~~~~~fl~NHD~~R~~s~~~~~~~~~k~a~alllt~pG~P~IYyG~E~G~~~~~~~~~d~~~R~~~p~ 475 (601)
T 3edf_A 398 LSL--DYLYPEPQNLVLFGGNHDMARMFSAAGEDFDRWRMNLVFLMTMPRIPQFYSGDEILMTSTVKGRDDASYRRDFPG 475 (601)
T ss_dssp HGG--GGGSSCGGGSEEESCCTTSCCHHHHTTTCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCCSSCCGGGGCCCCTT
T ss_pred Hhh--hcccCCccceEEeeccCCCCCchhhcCCCHHHHHHHHHHHHhcCCCcEEEeehcccccCCCCCCCChhhhhcCcc
Confidence 111 1111124567899999999999886665677899999999999999999999864
Q ss_pred Cc------------------chHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEE---CCEEEEEECCCC
Q 014447 348 DW------------------GLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAI---GDRVIMKIGPKM 399 (424)
Q Consensus 348 ~w------------------~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r---~~~~lv~ln~~~ 399 (424)
+| +++++||+|++||+++|+|+.|.+..+..++++++|.| +++++|++|.+.
T Consensus 476 ~W~~~~~~~F~~~~~~~~~~~l~~~~~~Li~lRk~~~al~~G~~~~~~~~~~v~af~R~~~~~~vlVv~N~s~ 548 (601)
T 3edf_A 476 GWAGDKANAFSGAGLTSQQRAAQDLVRKLANWRKNQPVIHNGRLMHFGPEENTWVYFRYNKDKRIMVAMNNND 548 (601)
T ss_dssp SSTTCSSBTTTTBTCCHHHHHHHHHHHHHHHHHHTCHHHHHSEEEECCCBTTEEEEEEECSSEEEEEEEECSS
T ss_pred CcCcccccCcCccccccchHHHHHHHHHHHHHHhhCccccCCceEEEEecCCEEEEEEEcCCCEEEEEEECCC
Confidence 25 27899999999999999999999998888899999999 568999999864
|
| >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-62 Score=510.41 Aligned_cols=353 Identities=22% Similarity=0.366 Sum_probs=268.9
Q ss_pred ccCCCCCCceEEEeecCCCC---------------CC--------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCC
Q 014447 16 IFLPFTSPALLFQGFNWESS---------------NK--------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ 72 (424)
Q Consensus 16 ~~p~~~~~~v~~~~f~~ds~---------------~~--------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~ 72 (424)
..|.|.++.|+||+|. +++ ++ .+|||+||+++|+|||+||||+||||||++++.+|
T Consensus 127 ~~~~W~~~~viYqi~~-~~F~~~~~~~~~~~~~~w~~~~~~~~~~~~G~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~ 205 (588)
T 1j0h_A 127 EAPDWVKDTVWYQIFP-ERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLGITGIYLTPIFRSPSNH 205 (588)
T ss_dssp CCCGGGGGCCEEEECG-GGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSSSS
T ss_pred CCCccccccEEEEEcc-hhhcCCCCCcCcccccccCCCCCcccccCCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCC
Confidence 3688999999999995 322 11 37999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCc
Q 014447 73 GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKE 152 (424)
Q Consensus 73 gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 152 (424)
||++.||++|| |+|||++||++||++||++||+||||+|+||++.+|+.... ....+....+.+|+... +.+.
T Consensus 206 GYd~~dy~~id-p~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~f~~---~~~~g~~s~y~dwy~~~---~~~~ 278 (588)
T 1j0h_A 206 KYDTADYFEVD-PHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQD---VWKNGESSKYKDWFHIH---EFPL 278 (588)
T ss_dssp CCSCSEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHHHH---HHHHGGGCTTGGGBCBS---SSSC
T ss_pred CcCccccCccC-ccCCCHHHHHHHHHHHHHCCCEEEEEECcCcCcccchhHHH---HHhcCCCCCcccccccc---cCCC
Confidence 99999999999 99999999999999999999999999999999987741000 00000011112222110 0000
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC-CeEEeee
Q 014447 153 YSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP-DFAVGEK 228 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p-~~~v~E~ 228 (424)
+....+++..+.+.+.+|+||++||+||++|++++++|++++||||||+|++++++.+||+++ +++.+| ++++||+
T Consensus 279 ~~~~~~~y~~~~~~~~~pdLn~~np~Vr~~l~~~~~~Wl~~~giDGfR~D~a~~~~~~f~~~~~~~v~~~~p~~~~igE~ 358 (588)
T 1j0h_A 279 QTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALKPDVYILGEI 358 (588)
T ss_dssp CCSSSCSBCBSTTCTTSBBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCCCCCCeEEecCCCCccccccCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 111123455556778999999999999999999999999889999999999999999999998 555677 7899999
Q ss_pred cCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhc-ch--hhhhh----hhcCCCCCCcCcCCCc
Q 014447 229 WDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ-GE--LWRLK----DSNGKPPGFIGILPQN 301 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~-~~--~~~~~----~~~~~~~~~~~~~~~~ 301 (424)
|.... .|+. ..++++.++|.+...+...+. +. ...+. ......+.. .+..
T Consensus 359 ~~~~~-------------------~~~~-g~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~y~~~---~~~~ 415 (588)
T 1j0h_A 359 WHDAM-------------------PWLR-GDQFDAVMNYPFTDGVLRFFAKEEISARQFANQMMHVLHSYPNN---VNEA 415 (588)
T ss_dssp SSCCG-------------------GGCS-SSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTSCHH---HHHT
T ss_pred cCchh-------------------hhhc-CCCcCEEEChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccc---hhhh
Confidence 96422 1222 235677888887777666552 21 11111 111100100 0123
Q ss_pred ceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC--------------Cc-------chHHHHHHHHH
Q 014447 302 AVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF--------------DW-------GLKEAISKLAA 360 (424)
Q Consensus 302 ~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~--------------~w-------~l~~~~~~L~~ 360 (424)
.++|++|||++|+.+..+.+.+++++|++++|++||+|+||||+|+ +| +++++||+|++
T Consensus 416 ~~~~~~nHD~~r~~~~~~~~~~~~~~a~~~~~~~pG~P~iy~G~E~g~~~~~dp~~r~~~~W~~~~~~~~l~~~~~~Li~ 495 (588)
T 1j0h_A 416 AFNLLGSHDTSRILTVCGGDIRKVKLLFLFQLTFTGSPCIYYGDEIGMTGGNDPECRKCMVWDPMQQNKELHQHVKQLIA 495 (588)
T ss_dssp CBCBSCCTTSCCHHHHTTTCHHHHHHHHHHHHHSSSCCEEETTGGGTCCCCSTTGGGCCCCCCTTTSCHHHHHHHHHHHH
T ss_pred heeecCCCCCchhhhhcCCcHHHHHHHHHHHHhCCCCcEEEeecccCccCCCCccccCCcCCCCCCCcHHHHHHHHHHHH
Confidence 4789999999999887765667899999999999999999999974 46 48999999999
Q ss_pred HHHhcCCCCCCCeEEEec--CCCEEEEEE---CCEEEEEECCCC
Q 014447 361 VRNRNGINTASRVNILAS--DADVYIAAI---GDRVIMKIGPKM 399 (424)
Q Consensus 361 lR~~~~al~~G~~~~~~~--~~~v~~~~r---~~~~lv~ln~~~ 399 (424)
||+++|+|+.|.++++.. ++++++|.| +++++|++|.+.
T Consensus 496 lRk~~~al~~g~~~~~~~~~~~~v~a~~R~~~~~~~lvv~N~~~ 539 (588)
T 1j0h_A 496 LRKQYRSLRRGEISFLHADDEMNYLIYKKTDGDETVLVIINRSD 539 (588)
T ss_dssp HHHHCHHHHHCEEEEECCSCTTTEEEEEEECSSCEEEEEEECSS
T ss_pred HHhhCHHHcCCcEEEEEECCCCCEEEEEEECCCCEEEEEEECCC
Confidence 999999999999998876 578999999 468999999864
|
| >4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-62 Score=509.92 Aligned_cols=363 Identities=20% Similarity=0.292 Sum_probs=261.5
Q ss_pred ccCCCCCCceEEEeec---CCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccccCCCCCCCCCHH
Q 014447 16 IFLPFTSPALLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQA 91 (424)
Q Consensus 16 ~~p~~~~~~v~~~~f~---~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~e 91 (424)
+.|.|++++|+||+|. -|+.++++|||+||++||||||+||||+||||||+++++ +|||++.||++|| |+|||++
T Consensus 2 a~~~Ww~~~viYei~~~~F~d~~~dg~Gdl~Gi~~kLdYLk~LGvt~I~L~Pi~~~~~~~~GYd~~dy~~vd-p~~Gt~~ 80 (549)
T 4aie_A 2 ASASWWKNAVVYQVYPKSFQDSNGDGIGDLQGIISRLDYLEKLGIDAIWLSPVYQSPGVDNGYDISDYEAID-PQYGTMA 80 (549)
T ss_dssp --CCGGGSCCEEEECGGGTCCSSSSSSCCHHHHHTTHHHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEEC-TTTCCHH
T ss_pred CCchhhccCeEEEEEcchhcCCCCCCCcCHHHHHHhhHHHHHCCCCEEEeCCCcCCCCCCCCcCccCCCCcC-cccCCHH
Confidence 3689999999999996 245566789999999999999999999999999999985 7999999999999 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEeeecccCCCCCCC----------CCcceeecCCCC-CCCCCCCCCcccccCCCccCCCCCCC
Q 014447 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGT-SDDRLDWGPSFICRGDKEYSDGQGND 160 (424)
Q Consensus 92 dl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~----------~~~~~~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~ 160 (424)
|||+||++||++||+||||+|+||||.+|+. +...|+.+.++. .....+|...+. .....+.+..+.+
T Consensus 81 dfk~Lv~~aH~~Gi~VilD~V~NHts~~~~wf~~~~~~~~~~~~~~y~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 159 (549)
T 4aie_A 81 DMDELISKAKEHHIKIVMDLVVNHTSDQHKWFVEAKKGKDNQYRDYYIWRDPVDEHEPNDLKSAFS-GSAWKYDERSGQY 159 (549)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCTTSTTGGGBCEECCBTTBCSSCCBCTTS-SBSEEEETTTTEE
T ss_pred HHHHHHHHHHHCCCEEEEEECccCCcCCcchhhhhhhcccccccccccccCCcccCCCCCcccccC-CCcccccccCCce
Confidence 9999999999999999999999999998841 122334444322 122233333222 1222334455667
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHH--------------HHHH---hcCCCe
Q 014447 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITK--------------VYME---NTSPDF 223 (424)
Q Consensus 161 ~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~--------------~~~~---~~~p~~ 223 (424)
..+.+...+||||++||+|+++|++++++|++ +||||||+|+|++++.+++. .+.+ ...+.+
T Consensus 160 ~~~~f~~~~~dln~~np~v~~~i~~~~~~W~e-~gvDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (549)
T 4aie_A 160 YLHFFADQQPDLNWQNTELRQKIYNMMNFWLD-KGIGGFRMDVIELIGKDPDKNIRENGPMLHPYLQEMNKATFGKRDVM 238 (549)
T ss_dssp EECSSCTTSCBBCTTCHHHHHHHHHHHHHHHH-TTCCEEEETTGGGTTCBGGGTBCTTCTTHHHHHHHHHHHTTTTTCCE
T ss_pred EecccCCCCCccccCCHHHHHHHHHHHHHHHH-hcCCceeEecHHhccccchhhhcccccccchHHHhhhhcccccccee
Confidence 77888999999999999999999999999997 99999999999998754332 2211 123478
Q ss_pred EEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcC-CceeeecccchHHHHHHhcc----------hhhhhh-hhcCCC
Q 014447 224 AVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAG-GAVAAFDFTTKGILQAAVQG----------ELWRLK-DSNGKP 291 (424)
Q Consensus 224 ~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~df~~~~~~~~~~~~----------~~~~~~-~~~~~~ 291 (424)
++||+|... ......|..... .....|+|............ ...... ......
T Consensus 239 ~vgE~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (549)
T 4aie_A 239 TVGETWNAT---------------PKIAEEYSDPDRHELSMVFQFENQSLDQQPGKEKWDLKPLDLGELKKVLVKWQTKI 303 (549)
T ss_dssp EEEECTTCC---------------HHHHHHHHCGGGCSCSEEECCGGGGGGBCTTSCTTSBCCCCHHHHHHHHHHHHHSS
T ss_pred eeecccCCC---------------HHHHHHhcCCccccccccccccccccccccccccccccccchHHHHHHHHHhhhhc
Confidence 999998642 344555554332 23444444332110000000 000000 000000
Q ss_pred CCCcCcCCCcceecccCCCCCcCcccCCCC----chhHHHHHHHHHcCCCeeEEecCCCCC-------------------
Q 014447 292 PGFIGILPQNAVTFIDNHDTGSTQRLWPFP----SDKVMLGYAYILTHPGTPCIFYDHFFD------------------- 348 (424)
Q Consensus 292 ~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~----~~~~~~a~a~~l~~pG~P~iyyG~~~~------------------- 348 (424)
. ......++|++|||++|..+..+.. .++.++++++++++||+|+||||+|++
T Consensus 304 ~----~~~~~~~~f~~nHD~~r~~s~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~~~~~~~~d~~~~~ 379 (549)
T 4aie_A 304 D----FDHAWNSLFWENHDIPRVISRWGNDQEYRVQCAKMFAIILHMMHGTPYIFNGEEIGMTNCPVKNIDEVEDIESIN 379 (549)
T ss_dssp C----TTSCCCEECSCCTTSCCHHHHHSCCSTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCCSSGGGCCCHHHHH
T ss_pred c----ccccccceeeccCCchhhhhhcCCcHHHHHHHHHHHHHHHhcCCCceEEEcchhhCccCCCCCChhhcCCHHHHh
Confidence 0 0122346799999999987654422 346788999999999999999999743
Q ss_pred --------------------------------cc----------------------------------hHHHHHHHHHHH
Q 014447 349 --------------------------------WG----------------------------------LKEAISKLAAVR 362 (424)
Q Consensus 349 --------------------------------w~----------------------------------l~~~~~~L~~lR 362 (424)
|+ ++.+||+|++||
T Consensus 380 ~~~~~~~~g~~~~~~~~~~~~~~r~~~R~~m~W~~~~~~gfs~~~~~~~~~~~~~~~nv~~q~~d~~Sll~~~r~Li~lR 459 (549)
T 4aie_A 380 MYNERLAEGYDEEELIHAINVKGRDNARRPMQWNDEKNAGFSEVDPWLSVNPNYKDINVENALADPNSIFYTYQKLIKLR 459 (549)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHCGGGGCSCCCCSSSGGGGSCSSCCSSCCCGGGGTSSHHHHHHCTTSHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCHHHHHhhhhccCCccccCCCCCCCCCCCCCCCCCccccCCcchhhhhHHHHHhCcchHHHHHHHHHHHH
Confidence 31 678999999999
Q ss_pred HhcCCCCCCCeEEEec-CCCEEEEEE---CCEEEEEECCCCC
Q 014447 363 NRNGINTASRVNILAS-DADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 363 ~~~~al~~G~~~~~~~-~~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
+++|+|+.|.++++.. ++.|++|.| +++++|++|.+.+
T Consensus 460 k~~pal~~G~~~~~~~~~~~v~a~~R~~~~~~~lvv~N~s~~ 501 (549)
T 4aie_A 460 HENPIVVDGDFSLVSNTQDAVLAYYRILNDKKWLVVANLSNE 501 (549)
T ss_dssp HHCHHHHHCEEEECTTCCTTEEEEEEEETTEEEEEEEECSSS
T ss_pred hhCHHhhCCceEEEecCCCcEEEEEEEeCCCEEEEEEECCCC
Confidence 9999999999998765 457999998 6788888887654
|
| >1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-62 Score=509.95 Aligned_cols=354 Identities=19% Similarity=0.329 Sum_probs=271.7
Q ss_pred ccCCCCCCceEEEeecCCCCC---------------C--------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCC
Q 014447 16 IFLPFTSPALLFQGFNWESSN---------------K--------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ 72 (424)
Q Consensus 16 ~~p~~~~~~v~~~~f~~ds~~---------------~--------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~ 72 (424)
..|.|.++.|+||+|. +++. . .+|||+||+++|+|||+||||+|||+||++++.+|
T Consensus 123 ~~~~W~~~~viYqi~~-~~F~~~~~~~~~~~~~~w~~~~~~~~~~~~Gd~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~ 201 (583)
T 1ea9_C 123 QPPAWVKDAIFYQIFP-ERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLGVNAVYFTPLFKATTNH 201 (583)
T ss_dssp CCCTHHHHCCCCEECS-TTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHTHHHHHHHTCSEEEECCCSSCSSSS
T ss_pred CCCcccccceEEEEch-HHhcCCCCccCccccccccCCCCcccccCCcCHHHHHHhhHHHHHcCCCEEEECCCccCCCCC
Confidence 4578889999999986 3321 1 26999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceee--cCCCCCCCCCCCCCcccccCC
Q 014447 73 GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCI--FEGGTSDDRLDWGPSFICRGD 150 (424)
Q Consensus 73 gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~--~~~~~~~~~~~w~~~~~~~~~ 150 (424)
||++.||++|| |+|||++||++||++||++||+||||+|+||++.+|+ |+. ...+......+|+.....
T Consensus 202 GYd~~dy~~id-p~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~-----~f~~~~~~g~~s~y~~~y~~~~~--- 272 (583)
T 1ea9_C 202 KYDTEDYFQID-PQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFP-----PFVDVLKNGEKSKYKDWFHIRSL--- 272 (583)
T ss_dssp TTSCSCTTCCC-TTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTTH-----HHHHHHTTTTTCTTTTSSCBCSS---
T ss_pred CcCcccccccC-cccCCHHHHHHHHHHHHHCCCEEEEEEccccCCCccH-----HHHHHHhcCCCCCccCceEecCC---
Confidence 99999999999 9999999999999999999999999999999998874 110 011112223334321110
Q ss_pred CccCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC-CeEE
Q 014447 151 KEYSD-GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP-DFAV 225 (424)
Q Consensus 151 ~~~~~-~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p-~~~v 225 (424)
+.+.+ ...++..+.+...+|+||++||+||++|++++++|++++||||||+|++++++.+||+++ +++.+| ++++
T Consensus 273 ~~~~~~~~~~y~~~~~~~~~pdln~~~p~Vr~~l~~~~~~W~~~~gvDGfR~D~~~~~~~~f~~~~~~~v~~~~p~~~~i 352 (583)
T 1ea9_C 273 PLEVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFRRVVKQANPDAYIL 352 (583)
T ss_dssp SCCCTTSCCSBCBSSSCTTSBBCCTTSHHHHHHHHHHHHHHHHHHCCSEEEETTCTTSCHHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCCCCCCCCceecCCCCCcceeccCCHHHHHHHHHHHHHHHHhcCceEEEecccccCCHHHHHHHHHHHHhhCCCeEEE
Confidence 00111 123555666778999999999999999999999999779999999999999999999998 455677 7899
Q ss_pred eeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch---hhhhhhhcCCC-CCCcCcCCCc
Q 014447 226 GEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLKDSNGKP-PGFIGILPQN 301 (424)
Q Consensus 226 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~ 301 (424)
||+|.... .|+. ..+++..++|.++..+...+.++ ...+....... .......+..
T Consensus 353 gE~~~~~~-------------------~~~~-~~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 412 (583)
T 1ea9_C 353 GEVWHESS-------------------IWLE-GDQFDAVMNYPFTNAVLDFFIHQIADAEKFSFMLGKQLAGYPRQASEV 412 (583)
T ss_dssp ECCCSCCT-------------------TTTT-TTSCSEEBCHHHHHHHHHHTTSCCSCHHHHHHHHHHTTTTSCHHHHHT
T ss_pred EEEcCChH-------------------HHhc-CCCcCEEECHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcchhhhhh
Confidence 99996432 1111 13466778888877777665432 11221111100 0000001223
Q ss_pred ceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC--------------Cc-------chHHHHHHHHH
Q 014447 302 AVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF--------------DW-------GLKEAISKLAA 360 (424)
Q Consensus 302 ~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~--------------~w-------~l~~~~~~L~~ 360 (424)
.++|++|||+.|+.+..+.+.+++++|+++++++||+|+||||+|+ +| +++++||+|++
T Consensus 413 ~~~~~~nHD~~r~~~~~~~~~~~~~la~~~~~~~pG~P~iy~G~E~g~~~~~d~~~r~~~~W~~~~~~~~~~~~~~~Li~ 492 (583)
T 1ea9_C 413 MFNLLDSHDTARLLTQADGDKRKMKLAVLFQFTYFGTPCIYYGDEVGLDGGHDPGCRKCMEWDETKHDKDLFAFYQTVIR 492 (583)
T ss_dssp CEECSCCTTSCCHHHHHCSCHHHHHHHHHHHTTSSSEECCCSSCSSCCCCCSHHHHTCCCCCCTTSCCHHHHHHHHHHHH
T ss_pred heeecCCCCchhhhhhcCCcHHHHHHHHHHHHcCCCCcEEEeccccCccCCCChhhcCCcCCCCCCCcHHHHHHHHHHHH
Confidence 4889999999998877665567899999999999999999999975 46 38999999999
Q ss_pred HHHhcCCCCCCCeEEEecC--CCEEEEEE---CCEEEEEECCCC
Q 014447 361 VRNRNGINTASRVNILASD--ADVYIAAI---GDRVIMKIGPKM 399 (424)
Q Consensus 361 lR~~~~al~~G~~~~~~~~--~~v~~~~r---~~~~lv~ln~~~ 399 (424)
||+++|+|+.|.++++..+ +++++|.| +++++|++|.+.
T Consensus 493 lRk~~~al~~g~~~~~~~~~~~~v~af~R~~~~~~~lvv~N~~~ 536 (583)
T 1ea9_C 493 LRQAHAALRTGTFKFLTAEKNSRQIAYLREDDQDTILVVMNNDK 536 (583)
T ss_dssp HHHHCSHHHHCCCCCSBCCSSCCEEEEEEECSSCEEEEEEECSS
T ss_pred HhhhChHhccCceEEEeeCCCCCEEEEEEEcCCCEEEEEEECCC
Confidence 9999999999999887765 78999999 478999999864
|
| >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-62 Score=506.14 Aligned_cols=352 Identities=22% Similarity=0.327 Sum_probs=268.3
Q ss_pred ccCCCCCCceEEEeecCCCC---------------CC---------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCC
Q 014447 16 IFLPFTSPALLFQGFNWESS---------------NK---------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAP 71 (424)
Q Consensus 16 ~~p~~~~~~v~~~~f~~ds~---------------~~---------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~ 71 (424)
..|.|.++.|+||+|. +++ +. .+|||+||+++|+|||+||||+||||||++++.+
T Consensus 123 ~~~~W~~~~viYqi~~-~~F~~~~~~~~~~~~~~w~~~~~~~~~~f~~G~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~ 201 (585)
T 1wzl_A 123 TTPEWAKEAVIYQIFP-ERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFASPSH 201 (585)
T ss_dssp CCCSGGGGCCEEEECG-GGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSSS
T ss_pred CCcchhccceEEEEcc-hhhcCCCcccccccccccCccCCCcccccCCCCHHHHHHHhHHHHHcCCCEEEECCcccCCCC
Confidence 4688999999999986 332 11 3799999999999999999999999999999999
Q ss_pred CCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCC
Q 014447 72 QGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDK 151 (424)
Q Consensus 72 ~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 151 (424)
|||+++||++|| |+|||++|||+||++||++||+||||+|+||++.+|+.... ....+......+|+.... .+
T Consensus 202 ~GYd~~dy~~id-~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~~~~~~~f~~---~~~~g~~s~y~~~y~~~~---~~ 274 (585)
T 1wzl_A 202 HKYDTADYLAID-PQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDWFFIED---FP 274 (585)
T ss_dssp SCCSCSEEEEEC-TTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHH---HHHHGGGCTTGGGBCBSS---SS
T ss_pred CCcCcccccccC-cccCCHHHHHHHHHHHHHCCCEEEEEEcCCcCCCccHHHHH---HHhcCCCCCccCceEecC---CC
Confidence 999999999999 99999999999999999999999999999999988741000 000001111122221100 00
Q ss_pred ccCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC-CeEEe
Q 014447 152 EYSDGQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP-DFAVG 226 (424)
Q Consensus 152 ~~~~~~~~~~~~~-~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p-~~~v~ 226 (424)
.+.....++..+. +...+|+||++||+||++|++++++|+ ++||||||+|++++++.+||+++ +++.+| ++++|
T Consensus 275 ~~~~~~~~y~~~~~~~~~~pdln~~~~~vr~~l~~~~~~Wl-~~gvDGfR~D~a~~~~~~f~~~~~~~v~~~~p~~~~ig 353 (585)
T 1wzl_A 275 VSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDALIVG 353 (585)
T ss_dssp CCCSSCCSBCBSSSSCTTCBBBCTTSHHHHHHHHHHHHHHH-HTTCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CCCCCCCCeeEcccCCCCCCeeCcCCHHHHHHHHHHHHHHH-hCCCeEEEEeccccCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 0011122444455 778899999999999999999999999 69999999999999999999998 455677 78999
Q ss_pred eecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch---hhhhh----hhcCCCCCCcCcCC
Q 014447 227 EKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLK----DSNGKPPGFIGILP 299 (424)
Q Consensus 227 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~ 299 (424)
|+|.... .|+. ..+++..++|.+...+...+.++ ...+. ......+. ..+
T Consensus 354 E~~~~~~-------------------~~~~-~~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~y~~---~~~ 410 (585)
T 1wzl_A 354 EIWHDAS-------------------GWLM-GDQFDSVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPE---QAA 410 (585)
T ss_dssp CCSSCCG-------------------GGCS-SSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHTTSCH---HHH
T ss_pred EecCchH-------------------HHhc-CCCcCEEECHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcch---hhh
Confidence 9996422 1221 23466778888777777665432 11111 11111110 012
Q ss_pred CcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC--------------Cc-------chHHHHHHH
Q 014447 300 QNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF--------------DW-------GLKEAISKL 358 (424)
Q Consensus 300 ~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~--------------~w-------~l~~~~~~L 358 (424)
...++|++|||+.|+.+.++.+.+++++|+++++++||+|+||||+|+ +| +++++||+|
T Consensus 411 ~~~~~~~~nHD~~r~~~~~~~~~~~~~~a~~~~~~~pG~P~iy~G~E~g~~~~~d~~~r~~~~W~~~~~~~~l~~~~~~L 490 (585)
T 1wzl_A 411 QGLWNLLDSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAGATDPDCLRPMIWEEKEQNRGLFEFYKEL 490 (585)
T ss_dssp TTCEEESCCTTSCCHHHHTTTCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCGGGSCHHHHHHHHHH
T ss_pred ccceEecCCCCchhhHHhcCCcHHHHHHHHHHHHhCCCCcEEEeecccCcCCCCCcccccCCCCCCCCCcHHHHHHHHHH
Confidence 345889999999999887765667899999999999999999999874 46 389999999
Q ss_pred HHHHHhcCCCCCCCeEEEecC--CCEEEEEE---CCEEEEEECCCC
Q 014447 359 AAVRNRNGINTASRVNILASD--ADVYIAAI---GDRVIMKIGPKM 399 (424)
Q Consensus 359 ~~lR~~~~al~~G~~~~~~~~--~~v~~~~r---~~~~lv~ln~~~ 399 (424)
++||+++|+|+.|.++++..+ +++++|.| +++++|++|.+.
T Consensus 491 i~lRk~~~al~~g~~~~~~~~~~~~v~af~R~~~~~~~lvv~N~~~ 536 (585)
T 1wzl_A 491 IRLRHRLASLTRGNVRSWHADKQANLYAFVRTVQDQHVGVVLNNRG 536 (585)
T ss_dssp HHHHHHCHHHHHCEEEEEEEETTTTEEEEEEEETTEEEEEEEECSS
T ss_pred HHHHhhCHHHcCCcEEEEEeCCCCCEEEEEEEcCCCEEEEEEECCC
Confidence 999999999999999988764 79999999 468889999864
|
| >2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-62 Score=502.12 Aligned_cols=358 Identities=19% Similarity=0.281 Sum_probs=271.3
Q ss_pred CCCCCCceEEEeecCCCC----CCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccccCCCCCCCCCHHH
Q 014447 18 LPFTSPALLFQGFNWESS----NKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQAD 92 (424)
Q Consensus 18 p~~~~~~v~~~~f~~ds~----~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~ed 92 (424)
|.|+++.|+||+|. +++ ++++|||+||+++|+|||+||||+|||+||++++. +|||++.||++|| |+|||++|
T Consensus 3 ~~W~~~~viYqi~~-~~F~~~~~dg~Gdl~gi~~~Ldyl~~LGv~~I~l~Pi~~~~~~~~GY~~~dy~~id-p~~Gt~~d 80 (543)
T 2zic_A 3 KHWWHKATVYQIYP-KSFMDTNGDGIGDLKGITSKLDYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIA-DIFGNMAD 80 (543)
T ss_dssp CCGGGGCCEEEECG-GGTCCSSSSSSCCHHHHHHTHHHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEEC-GGGCCHHH
T ss_pred ccchhhCeEEEEEc-HHhcCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCcccccccC-cccCCHHH
Confidence 89999999999996 444 45689999999999999999999999999999986 6999999999999 99999999
Q ss_pred HHHHHHHHHHcCCEEEEeeecccCCCCCCC----------CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCC
Q 014447 93 LKSLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDT 162 (424)
Q Consensus 93 l~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~----------~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 162 (424)
|++||++||++||+||||+|+|||+.+|+. +..+|+.+.+. +.+|...+. ...+.+.+..++++.
T Consensus 81 f~~lv~~~h~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~y~d~y~~~~~----p~~~~~~f~-~~~w~~~~~~~~~y~ 155 (543)
T 2zic_A 81 MDNLLTQAKMRGIKIIMDLVVNHTSDEHAWFIEAREHPDSSERDYYIWCDQ----PNDLESIFG-GSAWQYDDKSDQYYL 155 (543)
T ss_dssp HHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHHCTTSGGGGGBCEESS----CCSCBCTTS-SBSEEEETTTTEEEE
T ss_pred HHHHHHHHHHCCCEEEEEEecCcccccchhhHhhhcCCCCCCcceeecCCC----CCcccccCC-CCCCcccCCCCcEEE
Confidence 999999999999999999999999998751 12245544431 233433221 122233344456677
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH--------------HHHHHHHHhc--CC-CeEE
Q 014447 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP--------------SITKVYMENT--SP-DFAV 225 (424)
Q Consensus 163 ~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~--------------~~~~~~~~~~--~p-~~~v 225 (424)
+.+...+||||++||+||++|++++++|++ +||||||+|+|++++. +||+++.+.+ +| +++|
T Consensus 156 ~~f~~~~pdLN~~np~Vr~~i~~~~~~Wl~-~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v 234 (543)
T 2zic_A 156 HFFSKKQPDLNWENANLRQKIYDMMNFWID-KGIGGFRMDVIDMIGKIPAQHIVSNGPKLHAYLKEMNAASFGQHDLLTV 234 (543)
T ss_dssp CSSCTTSCBBCTTCHHHHHHHHHHHHHHHT-TTCCEEEETTGGGTTCBGGGTBCSSCTTHHHHHHHHHHHTGGGSCCEEE
T ss_pred CcccCCCCccCcCCHHHHHHHHHHHHHHHh-cCCCEEEECCccceeecCCCccccccHHHHHHHHHHHHHHhccCCeEEE
Confidence 788899999999999999999999999998 9999999999999975 7888884433 34 8899
Q ss_pred eeecCCCCCCCCCCCCCCCCCchhHHHHHHHhc-CCceeeecccchHHHHHHh-c-------c--hhhhhhhhcCCCCCC
Q 014447 226 GEKWDSLSYGPDGKPDANQDGHRGALKDWVQAA-GGAVAAFDFTTKGILQAAV-Q-------G--ELWRLKDSNGKPPGF 294 (424)
Q Consensus 226 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~df~~~~~~~~~~-~-------~--~~~~~~~~~~~~~~~ 294 (424)
||+|... ...+..|+... .++.+.|+|..... ... . + ....+..........
T Consensus 235 gE~~~~~---------------~~~~~~y~~~~~~~~~~~~~f~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 297 (543)
T 2zic_A 235 GETWGAT---------------PEIAKQYSNPVNHELSMVFQFEHIGL--QHKPEAPKWDYVKELNVPALKTIFNKWQTE 297 (543)
T ss_dssp EECTTCC---------------HHHHHHHHCGGGCSCSEEECCTTGGG--GBCTTSCTTSBCSSCCHHHHHHHHHHHHHH
T ss_pred eeecCCC---------------HHHHHHHhCCCCCccceEecchhhcc--ccccccccccccCCCCHHHHHHHHHHHHHh
Confidence 9998531 45566777643 56888888875421 000 0 0 111111110000000
Q ss_pred cCcCCCcceecccCCCCCcCcccCCCCc----hhHHHHHHHHHcCCCeeEEecCCCCC----------------------
Q 014447 295 IGILPQNAVTFIDNHDTGSTQRLWPFPS----DKVMLGYAYILTHPGTPCIFYDHFFD---------------------- 348 (424)
Q Consensus 295 ~~~~~~~~~~f~~nHD~~r~~~~~~~~~----~~~~~a~a~~l~~pG~P~iyyG~~~~---------------------- 348 (424)
....+...++|++|||++|..+..+... ++.++|+++++++||+|+||||+|++
T Consensus 298 ~~~~~~~~~~f~~nHD~~R~~~~~~~~~~~~~~~~k~a~~~llt~pG~P~iy~G~E~G~~~~~~~~~~~~~D~~~~n~~~ 377 (543)
T 2zic_A 298 LELGQGWNSLFWNNHDLPRVLSIWGNTGKYREKSAKALAILLHLMRGTPYIYQGEEIGMTNYPFKDLNELDDIESLNYAK 377 (543)
T ss_dssp SCTTTCCCEECSCCTTSCCHHHHTSCSSTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCCCSSTTCCCHHHHHHHH
T ss_pred cccCCCeeeeeecCCCCccchhhcCCchhhhHHHHHHHHHHHHhCCCceEEEeccccCCCCCCCCCHHHcCCHHHhhhHH
Confidence 0001233478999999999877665332 26889999999999999999998632
Q ss_pred -----------------------------c-----------------------------------chHHHHHHHHHHHHh
Q 014447 349 -----------------------------W-----------------------------------GLKEAISKLAAVRNR 364 (424)
Q Consensus 349 -----------------------------w-----------------------------------~l~~~~~~L~~lR~~ 364 (424)
| +++.+||+|++||++
T Consensus 378 ~~~~~g~~~~~~~~~~~~~~rd~~R~pm~W~~~~~agFs~~~~pwl~~~~~y~~~nv~~q~~~~~s~~~~~~~Li~lRk~ 457 (543)
T 2zic_A 378 EAFTNGKSMETIMDSIRMIGRDNARTPMQWDASQNAGFSTADKTWLPVNPNYKDINVQAALKNSNSIFYTYQQLIQLRKE 457 (543)
T ss_dssp HHHTTTCCHHHHHHHHHHHCGGGGCSCCCCCSSGGGGTCSSSSCSSCCCGGGGTSCHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHhhCCCCCcCCcccCCCCCCCCCCCCCCCcCCCCCcCccCHHHHHhchhhHHHHHHHHHHHHhc
Confidence 2 267899999999999
Q ss_pred cCCCCCCCeEEEecCCCEEEEEE---CCEEEEEECCCCC
Q 014447 365 NGINTASRVNILASDADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 365 ~~al~~G~~~~~~~~~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
+|+|+.|.++.+..++++++|.| +++++|++|.+..
T Consensus 458 ~~al~~G~~~~~~~~~~v~a~~R~~~~~~~lvv~N~s~~ 496 (543)
T 2zic_A 458 NDWLVDADFELLPTADKVFAYLRKVREERYLIVVNVSDQ 496 (543)
T ss_dssp CTHHHHCCCEECCCCTTEEEEEEEETTEEEEEEEECSSS
T ss_pred ChhhhcCceEEecCCCcEEEEEEEeCCcEEEEEEECCCC
Confidence 99999999998855678999999 4688899998653
|
| >1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-61 Score=482.49 Aligned_cols=336 Identities=31% Similarity=0.531 Sum_probs=259.8
Q ss_pred CCceEEEeecCCCCCCCCCc-HHHHHhhhhHHHHcCCCEEEeCCCCCCCC---CCCCCccccc---------CCCCCCCC
Q 014447 22 SPALLFQGFNWESSNKAGGW-YNSLKNSIPDLSNAGITHVWLPPPSQSVA---PQGYMPGRLY---------DLDASKYG 88 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~-~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~---~~gY~~~d~~---------~id~~~~G 88 (424)
++.||||+|.|+..+ +|| |+||+++|+|||+||||+|||+||++++. +|||++.||+ +|| |+||
T Consensus 8 ~~~viyq~f~w~~~~--~G~~~~gi~~~Ldyl~~lGvt~I~l~Pi~~~~~~~~~~gY~~~dy~~lg~~~~~~~id-~~~G 84 (435)
T 1mxg_A 8 EGGVIMQAFYWDVPG--GGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVE-TRFG 84 (435)
T ss_dssp GTCCEEECCCTTCCC--SSCHHHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSS-CSSC
T ss_pred CCcEEEEEEEeccCC--CCCHHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCCcCcccccccccccccCcCC-CCCC
Confidence 678999999999765 689 99999999999999999999999999874 5899999999 599 9999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCC--CCcc---eeecCCCCCC-CCCCCCCcccccCCCccCCCCCCCCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKD--GRGI---YCIFEGGTSD-DRLDWGPSFICRGDKEYSDGQGNDDT 162 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~--~~~~---~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~ 162 (424)
|++||++||++||++||+||+|+|+||++.+++. +... |..|....+. .+.+|. .+...+...+ ..
T Consensus 85 t~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~f~~~~~~~~-------~~ 156 (435)
T 1mxg_A 85 SKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTANYL-DFHPNELHCC-------DE 156 (435)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCCCEEEEETTTTEEEEEECTTCTTCCSCCCGG-GBSSSSSCSC-------CS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcccccCCCcccCCCCCccccccCCCccCCCCccccc-cCCCCCcCcc-------CC
Confidence 9999999999999999999999999999987631 1111 2223211010 011121 1111110011 11
Q ss_pred CCCCCCCCCCCCCCHHHHHHH----HHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEeeecCCCCCCCCC
Q 014447 163 GEDFQPAPDIDHLNPRVQKEL----SDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDG 238 (424)
Q Consensus 163 ~~~~~~~~dln~~np~v~~~l----~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~v~E~~~~~~~~~~~ 238 (424)
+ .+.++||||++||+||++| .+++++|++ +||||||+|+|++++.+||+++.++. +.+++||+|...
T Consensus 157 g-~~~~~~dln~~np~V~~~l~~~~~~~~~~w~~-~gvDGfR~Da~~~i~~~f~~~~~~~~-~~~~vgE~~~~~------ 227 (435)
T 1mxg_A 157 G-TFGGFPDICHHKEWDQYWLWKSNESYAAYLRS-IGFDGWRFDYVKGYGAWVVRDWLNWW-GGWAVGEYWDTN------ 227 (435)
T ss_dssp C-CCTTSCBBCTTSHHHHHHHTSSTTSHHHHHHH-TTCCEEEETTGGGSCHHHHHHHHHHH-CCCEEECCCCSC------
T ss_pred C-cccCccccCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEhhhhhhccHHHHHHHHHhc-CceEEEccccCC------
Confidence 1 3568999999999999554 689999998 99999999999999999999997765 578999999642
Q ss_pred CCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch-hhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCccc
Q 014447 239 KPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE-LWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRL 317 (424)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~ 317 (424)
...+..|+...+ .+.|||++...+..++.+. ...+..............+..+++|++|||++|..
T Consensus 228 ---------~~~~~~~~~~~~--~~~fd~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~-- 294 (435)
T 1mxg_A 228 ---------VDALLSWAYESG--AKVFDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIW-- 294 (435)
T ss_dssp ---------HHHHHHHHHHHT--SEEECHHHHHHHHHHHTTTCHHHHHHHHHTTCSSTTTCTTTEEEESCCSSCCCCS--
T ss_pred ---------hHHHHhhhccCC--CceeehHHHHHHHHHHhcCCHHHHHHHHhccccccccCHHHhhhhcccCCccchh--
Confidence 345677876543 7789999988888887543 32333322111122222466789999999999864
Q ss_pred CCCCchhHHHHHHHHHcCCCeeEEecCCCCCcchHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEEC-----CEEE
Q 014447 318 WPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIG-----DRVI 392 (424)
Q Consensus 318 ~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~~w~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r~-----~~~l 392 (424)
..++|++++|++||+|+||||+|.+|++.++|++|+++|+ +++.|.++.+..++++++|.|. +.++
T Consensus 295 ------~~~~a~a~~lt~~G~P~iyyG~e~~~~~~~~i~~L~~~r~---al~~g~~~~~~~~~~~~~~~R~~~~~~~~~~ 365 (435)
T 1mxg_A 295 ------NKYPAYAFILTYEGQPVIFYRDFEEWLNKDKLINLIWIHD---HLAGGSTTIVYYDNDELIFVRNGDSRRPGLI 365 (435)
T ss_dssp ------CHHHHHHHHHHSSSEEEEEHHHHHTTSCHHHHHHHHHHHH---HTCCSCEEEEEECSSEEEEEECCCSSCCCEE
T ss_pred ------hHHHHHHHHHcCCCccEEEecccccchHHHHHHHHHHHHH---HhccCCeEEEecCCCEEEEEEeCCCCCCEEE
Confidence 1379999999999999999999999999999999999997 5789999998888899999983 3688
Q ss_pred EEECCCC
Q 014447 393 MKIGPKM 399 (424)
Q Consensus 393 v~ln~~~ 399 (424)
|++|++.
T Consensus 366 vv~N~~~ 372 (435)
T 1mxg_A 366 TYINLSP 372 (435)
T ss_dssp EEEECSS
T ss_pred EEEeCCC
Confidence 8888753
|
| >1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-61 Score=487.61 Aligned_cols=355 Identities=26% Similarity=0.428 Sum_probs=260.3
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCC--CCCCCCCcccccC---------CCCCCCCCH
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS--VAPQGYMPGRLYD---------LDASKYGSQ 90 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~--~~~~gY~~~d~~~---------id~~~~Gt~ 90 (424)
++.||||+|.|++.. +||||+||+++|+|||+||||+||||||+++ +.+|||++.||++ || |+|||+
T Consensus 3 ~~~vi~q~f~w~~~~-~gG~~~gi~~~LdyL~~LGvt~I~l~Pi~~~~~~~~~GY~~~dy~~~~~~~~~~~id-p~~Gt~ 80 (480)
T 1ud2_A 3 LNGTMMQYYEWHLEN-DGQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVR-TKYGTK 80 (480)
T ss_dssp CCCCEEECCCTTCCC-SSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSS-CSSCCH
T ss_pred CCceEEEeeeccCCC-CCCcHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCcCccchhhcccccccCccC-CCCCCH
Confidence 467999999999887 4799999999999999999999999999994 4689999999995 99 999999
Q ss_pred HHHHHHHHHHHHcCCEEEEeeecccCCC--CCCC-------CCc------------ceee--cCCC-CCCCCC--CCCCc
Q 014447 91 ADLKSLIQAFRQKGIKCLADMVINHRTA--ERKD-------GRG------------IYCI--FEGG-TSDDRL--DWGPS 144 (424)
Q Consensus 91 edl~~Lv~~aH~~Gi~VilD~v~NH~~~--~~~~-------~~~------------~~~~--~~~~-~~~~~~--~w~~~ 144 (424)
+||++||++||++||+||||+|+||++. +|+. +.. .|.. |++. .+.... +|+..
T Consensus 81 ~df~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~~w~~~~~pg~~~~y~~~~~~~~~~ 160 (480)
T 1ud2_A 81 AQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHF 160 (480)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCGGGTTSSCCCCBCGGGE
T ss_pred HHHHHHHHHHHHCCCEEEEEEccCccccccccccceeeecCCcccccccccccccccccccccCCCCCCcccCccccccc
Confidence 9999999999999999999999999974 3320 000 0110 1110 011111 12100
Q ss_pred c--cccC-----------CCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHH
Q 014447 145 F--ICRG-----------DKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSI 211 (424)
Q Consensus 145 ~--~~~~-----------~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~ 211 (424)
. ...+ ...|.+........+.+..+||||++||+||++|++++++|++++||||||+|+|++++.+|
T Consensus 161 ~~~d~~~~~~~~~~~~~~~~~W~~~~~~~~g~~~~~~~~dLn~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i~~~f 240 (480)
T 1ud2_A 161 NGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWY 240 (480)
T ss_dssp EEEEEETTTTEEEEEEETTCCCCSSCCCTTSCCCCCSSEEECTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHH
T ss_pred CCCCCcccccccccccccCCCcccccccccCccccccCCccCCCCHHHHHHHHHHHHHHHHccCCCEEEEcchhhCCHHH
Confidence 0 0000 11121100001122345567999999999999999999999988999999999999999999
Q ss_pred HHHHHHh----cCC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc-hhhhhh
Q 014447 212 TKVYMEN----TSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWRLK 285 (424)
Q Consensus 212 ~~~~~~~----~~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~-~~~~~~ 285 (424)
|+++.++ .+| .++|||+|... ...+..|+...++..+.|||++...+..++.+ ....+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~igE~~~~~---------------~~~~~~y~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~ 305 (480)
T 1ud2_A 241 TSDWVRHQRNEADQDLFVVGEYWKDD---------------VGALEFYLDEMNWEMSLFDVPLNYNFYRASQQGGSYDMR 305 (480)
T ss_dssp HHHHHHHHHHHCSSCCEEEECCCCSC---------------HHHHHHHHHHTTTCSEEECHHHHHHHHHHHHHCTTSCGG
T ss_pred HHHHHHHHHHhcCCCcEEEEeccCCC---------------HHHHHHHHhccCCcceeechHHHHHHHHHHhcCCcccHH
Confidence 9999554 456 78999999642 45567888766666778999988888877643 222222
Q ss_pred hhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCc-hhHHHHHHHHHcCC-CeeEEecCCCCCc------chHHHHHH
Q 014447 286 DSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS-DKVMLGYAYILTHP-GTPCIFYDHFFDW------GLKEAISK 357 (424)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~-~~~~~a~a~~l~~p-G~P~iyyG~~~~w------~l~~~~~~ 357 (424)
.... ..+....|...++|++|||+.|..+...... .+.++|++++|++| |+|+||||+|++. .+.++||+
T Consensus 306 ~~~~--~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~~a~a~~l~~~~G~P~iy~G~E~g~~g~~d~~~~~~~~~ 383 (480)
T 1ud2_A 306 NILR--GSLVEAHPMHAVTFVDNHDTQPGESLESWVADWFKPLAYATILTREGGYPNVFYGDYYGIPNDNISAKKDMIDE 383 (480)
T ss_dssp GTTT--TCHHHHCGGGEEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCCCHHHHHH
T ss_pred HHHh--ccccccCCCceEEEeccCCCCccccccccchhHHHHHHHHHHHHCCCCceEEecchhhCCCCCCCchHHHHHHH
Confidence 2211 1111123556789999999999987664322 24689999999997 9999999999765 58999999
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCCEEEEEECC-------EEEEEECCC
Q 014447 358 LAAVRNRNGINTASRVNILASDADVYIAAIGD-------RVIMKIGPK 398 (424)
Q Consensus 358 L~~lR~~~~al~~G~~~~~~~~~~v~~~~r~~-------~~lv~ln~~ 398 (424)
|++||+++ +.|.+..+..++++++|.|.. .++|++||.
T Consensus 384 Li~lR~~~---~~g~~~~~~~~~~~~af~R~~~~~~~~~~~vvv~~N~ 428 (480)
T 1ud2_A 384 LLDARQNY---AYGTQHDYFDHWDVVGWTREGSSSRPNSGLATIMSNG 428 (480)
T ss_dssp HHHHHHHT---CCSCEEEECCSSSEEEEEECCCTTSTTCCEEEEEESS
T ss_pred HHHHHHHh---ccCCceEEecCCCEEEEEEEcCCCCCCCCEEEEEECC
Confidence 99999994 578887777778999999921 467776653
|
| >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-61 Score=488.10 Aligned_cols=355 Identities=26% Similarity=0.438 Sum_probs=260.2
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccC---------CCCCCCCCH
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYD---------LDASKYGSQ 90 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~---------id~~~~Gt~ 90 (424)
++.||||+|.|+... ++|||+||+++|+|||+||||+|||+||++++ .+|||++.||++ || |+|||+
T Consensus 1 ~~~vi~q~f~w~~~~-~gG~~~gi~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~GY~~~dy~~~~~~~~~~~id-~~~Gt~ 78 (483)
T 3bh4_A 1 VNGTLMQYFEWYTPN-DGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVR-TKYGTK 78 (483)
T ss_dssp CCCCEEECCCTTCCS-SSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTSCSSSEEETTCSSCSCCSSCSS-CSSCCH
T ss_pred CCccEEEEEEeccCC-CCCCHHHHHHHHHHHHhcCCCEEEcCccccCCCCCCCCcccccccccccccccCccC-CCCCCH
Confidence 578999999999875 58999999999999999999999999999954 689999999995 99 999999
Q ss_pred HHHHHHHHHHHHcCCEEEEeeecccCCC--CCCCC-------C------------cceee--cCCC-CCCCCCCCCCccc
Q 014447 91 ADLKSLIQAFRQKGIKCLADMVINHRTA--ERKDG-------R------------GIYCI--FEGG-TSDDRLDWGPSFI 146 (424)
Q Consensus 91 edl~~Lv~~aH~~Gi~VilD~v~NH~~~--~~~~~-------~------------~~~~~--~~~~-~~~~~~~w~~~~~ 146 (424)
+||++||++||++||+||||+|+||++. .|+.. . ..|.. |++. .+.....|.....
T Consensus 79 ~df~~lv~~aH~~Gi~VilD~V~NH~~~~d~~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~ 158 (483)
T 3bh4_A 79 SELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHF 158 (483)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGE
T ss_pred HHHHHHHHHHHHCCCEEEEEEccCcccCcccccceeeeeeCccccccccccccccccccccccCCCCcccccCccccccC
Confidence 9999999999999999999999999974 22200 0 01111 1110 0111111110000
Q ss_pred cc-----------------CCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH
Q 014447 147 CR-----------------GDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 209 (424)
Q Consensus 147 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~ 209 (424)
.. ....|.+........+.+..+||||++||+||++|++++++|++++||||||+|+|++++.
T Consensus 159 ~~~d~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i~~ 238 (483)
T 3bh4_A 159 DGADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKF 238 (483)
T ss_dssp EEEEEETTTTEEEEEEECSTTCCCCSSSCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCH
T ss_pred CCCCcccccCccccccccCCCCCcccccccccCccccccCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEechhcCCH
Confidence 00 0112221000111223455679999999999999999999999889999999999999999
Q ss_pred HHHHHHHHh----cCC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc-hhhh
Q 014447 210 SITKVYMEN----TSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWR 283 (424)
Q Consensus 210 ~~~~~~~~~----~~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~-~~~~ 283 (424)
+||+++.++ .+| .++|||+|... ...+..|+...++..+.|||++...+..++.+ ....
T Consensus 239 ~f~~~~~~~~~~~~~~~~~~igE~~~~~---------------~~~~~~y~~~~~~~~~~fd~~~~~~~~~~~~~~~~~~ 303 (483)
T 3bh4_A 239 SFLRDWVQAVRQATGKEMFTVAEYWQNN---------------AGKLENYLNKTSFNQSVFDVPLHFNLQAASSQGGGYD 303 (483)
T ss_dssp HHHHHHHHHHHHHHCSCCEEEECCCCSC---------------HHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEecCCC---------------hHHHHHHHhhcCCCceeecHHHHHHHHHHHhcCCccc
Confidence 999998543 456 78999999631 45667888766666788999988888777643 2222
Q ss_pred hhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCch-hHHHHHHHHHcCC-CeeEEecCCCCCc---------chH
Q 014447 284 LKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD-KVMLGYAYILTHP-GTPCIFYDHFFDW---------GLK 352 (424)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~-~~~~a~a~~l~~p-G~P~iyyG~~~~w---------~l~ 352 (424)
+..... ..+....|...++|++|||+.|..+..+...+ ..++|++++|++| |+|+||||+|++. ++.
T Consensus 304 l~~~~~--~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~~a~a~~l~~~~G~P~iy~G~E~g~~g~~~~~~~~~~ 381 (483)
T 3bh4_A 304 MRRLLD--GTVVSRHPEKAVTFVENHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFYGDMYGTKGTSPKEIPSLK 381 (483)
T ss_dssp GGGTTT--TCHHHHCGGGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCCCCSSTTCCCCCH
T ss_pred HHHHHh--hhhhhcCCcceeeEcccCCCCccccccccchhHHHHHHHHHHHHCCCCeEEEEehhhcCCCCCCcccchHHH
Confidence 222211 11111235567899999999999877653222 4679999999997 9999999998764 489
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEECC-------EEEEEECCC
Q 014447 353 EAISKLAAVRNRNGINTASRVNILASDADVYIAAIGD-------RVIMKIGPK 398 (424)
Q Consensus 353 ~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r~~-------~~lv~ln~~ 398 (424)
++||+|++||++ ++.|.+..+..++++++|.|.. .++|++||.
T Consensus 382 ~~~~~Li~lR~~---~~~g~~~~~~~~~~~~af~R~~~~~~~~~~~~vvi~N~ 431 (483)
T 3bh4_A 382 DNIEPILKARKE---YAYGPQHDYIDHPDVIGWTREGDSSAAKSGLAALITDG 431 (483)
T ss_dssp HHHHHHHHHHHH---TCCSCEEEECCSSSEEEEEECCCTTSTTCCEEEEEESS
T ss_pred HHHHHHHHHHHH---hccCCceEeeCCCCEEEEEEECCCCCCCCCEEEEEECC
Confidence 999999999999 3678888777778999999932 366665553
|
| >1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-60 Score=484.68 Aligned_cols=344 Identities=26% Similarity=0.479 Sum_probs=254.3
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCC--CCCCCCCCcccccC---------CCCCCCCCH
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ--SVAPQGYMPGRLYD---------LDASKYGSQ 90 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~--~~~~~gY~~~d~~~---------id~~~~Gt~ 90 (424)
++.||||+|.|+... ++|||+||+++|+|||+||||+||||||++ ++.+|||++.||++ || |+|||+
T Consensus 5 ~~~vi~q~f~w~~~~-~gG~~~gi~~~LdyL~~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~~~~~~q~~~id-p~~Gt~ 82 (485)
T 1wpc_A 5 TNGTMMQYFEWYLPN-DGNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVR-TKYGTR 82 (485)
T ss_dssp CCCCEEECCCTTCCS-SSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSS-CSSCCH
T ss_pred CCceEEEEEecCCCC-CCCcHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCCCeecccccccccccCccC-CCCCCH
Confidence 478999999998875 589999999999999999999999999999 44689999999995 99 999999
Q ss_pred HHHHHHHHHHHHcCCEEEEeeecccCCC--CCCC-------CC------------cceee--cCCC-CCCCCCCCCCccc
Q 014447 91 ADLKSLIQAFRQKGIKCLADMVINHRTA--ERKD-------GR------------GIYCI--FEGG-TSDDRLDWGPSFI 146 (424)
Q Consensus 91 edl~~Lv~~aH~~Gi~VilD~v~NH~~~--~~~~-------~~------------~~~~~--~~~~-~~~~~~~w~~~~~ 146 (424)
+||++||++||++||+||||+|+||++. .|+. +. ..|.. |++. .+.....|.....
T Consensus 83 ~df~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~ 162 (485)
T 1wpc_A 83 SQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHF 162 (485)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSEECSCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGE
T ss_pred HHHHHHHHHHHHCCCEEEEEEeccccCCCCcCcceeEEeeCccccccccccccccccccccCCCCCCCccccCccccccC
Confidence 9999999999999999999999999974 3320 00 01111 1110 0111111110000
Q ss_pred cc-C-----------------CCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC
Q 014447 147 CR-G-----------------DKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 208 (424)
Q Consensus 147 ~~-~-----------------~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~ 208 (424)
.. + ...|.+........+.+..+||||++||+||++|++++++|++++||||||+|+|++++
T Consensus 163 ~~~d~~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i~ 242 (485)
T 1wpc_A 163 DGVDWDQSRRLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIK 242 (485)
T ss_dssp EEESCCTTTCCSSCEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSC
T ss_pred CCCCcccccccccceeeecCCCCCcccccccccCCccccccCccccCCHHHHHHHHHHHHHHHHhCCCCEEEhHhhhcCC
Confidence 00 0 11121100001122345567999999999999999999999987999999999999999
Q ss_pred HHHHHHHHHh----cCC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc-hhh
Q 014447 209 PSITKVYMEN----TSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELW 282 (424)
Q Consensus 209 ~~~~~~~~~~----~~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~-~~~ 282 (424)
.+||+++.++ .+| .++|||+|... ...+..|+...++..+.|||++...+..++.+ ...
T Consensus 243 ~~f~~~~~~~~~~~~~~~~~~igE~~~~~---------------~~~~~~y~~~~~~~~~~fd~~~~~~~~~~~~~~~~~ 307 (485)
T 1wpc_A 243 YSFTRDWINHVRSATGKNMFAVAEFWKND---------------LGAIENYLQKTNWNHSVFDVPLHYNLYNASKSGGNY 307 (485)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEECCCCSC---------------HHHHHHHHHHTTTCSEEECHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeccCC---------------hHHHHHHHhhcCCcceeeCHHHHHHHHHHHccCCcc
Confidence 9999998543 456 88999999631 45667788766666778999988888777643 222
Q ss_pred hhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCch-hHHHHHHHHHcCC-CeeEEecCCCCCc------chHHH
Q 014447 283 RLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD-KVMLGYAYILTHP-GTPCIFYDHFFDW------GLKEA 354 (424)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~-~~~~a~a~~l~~p-G~P~iyyG~~~~w------~l~~~ 354 (424)
.+...... .+....|...++|++|||+.|..+..+.... ..++|++++|++| |+|+||||+|++. .+.++
T Consensus 308 ~l~~~~~~--~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~~a~a~~l~~~~G~P~iy~G~E~g~~~~~d~~~~~~ 385 (485)
T 1wpc_A 308 DMRNIFNG--TVVQRHPSHAVTFVDNHDSQPEEALESFVEEWFKPLAYALTLTREQGYPSVFYGDYYGIPTHGVPAMRSK 385 (485)
T ss_dssp CGGGTTTT--CHHHHCGGGEEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCCCHHH
T ss_pred cHHHHHhh--hhcccCCCcceEEeccCCCCccccccccchhHHHHHHHHHHHhCCCCeeEEEeccccCcCCCCCccHHHH
Confidence 22222111 1111235567899999999999876653222 4689999999997 9999999999875 48899
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEE
Q 014447 355 ISKLAAVRNRNGINTASRVNILASDADVYIAAI 387 (424)
Q Consensus 355 ~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r 387 (424)
||+|++||+++ +.|.++.+..++++++|.|
T Consensus 386 ~~~Li~lR~~~---~~g~~~~~~~~~~~~a~~R 415 (485)
T 1wpc_A 386 IDPILEARQKY---AYGKQNDYLDHHNIIGWTR 415 (485)
T ss_dssp HHHHHHHHHHT---CCSCEEEECCSSSEEEEEE
T ss_pred HHHHHHHHHHh---ccCCcceeecCCCEEEEEE
Confidence 99999999995 5788888777789999999
|
| >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-62 Score=515.90 Aligned_cols=364 Identities=22% Similarity=0.333 Sum_probs=267.3
Q ss_pred cCCCCCCceEEEeecCCCCCCC-------------------------CCcHHHHHhhhhHHHHcCCCEEEeCCCCCC---
Q 014447 17 FLPFTSPALLFQGFNWESSNKA-------------------------GGWYNSLKNSIPDLSNAGITHVWLPPPSQS--- 68 (424)
Q Consensus 17 ~p~~~~~~v~~~~f~~ds~~~~-------------------------~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~--- 68 (424)
.|+|+++.|+||+|+ |++.++ +|||+||+++|||||+|||++|||+||+++
T Consensus 2 ~~~~~~~~viYqI~p-~~F~d~d~~n~~~~~~~~~~d~~~~~~~~~~gGdl~gi~~kLdyLk~LGv~aIwL~Pi~~~~~~ 80 (686)
T 1qho_A 2 SSASVKGDVIYQIII-DRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDT 80 (686)
T ss_dssp TTSCCTTCCEEEECG-GGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHTHHHHHHHTCCEEEECCCEEECSS
T ss_pred CcccCccCcEEEEec-cccCCCCcccCcccccccccCCCccccccccCCCHHHHHHhhHHHHhcCCCEEEECccccCCcc
Confidence 588999999999997 544321 599999999999999999999999999985
Q ss_pred ------CCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCC---CcceeecCCCCC--CC
Q 014447 69 ------VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDG---RGIYCIFEGGTS--DD 137 (424)
Q Consensus 69 ------~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~---~~~~~~~~~~~~--~~ 137 (424)
.++|||++.||++|| |+|||++||++||++||++|||||||+|+||++.+|... ......+.++.. ..
T Consensus 81 ~~~~g~~~~~GYd~~Dy~~id-p~~Gt~~df~~Lv~~aH~~GikVilD~V~NHts~~~~~~~~~~~~g~~~~~g~~~~~~ 159 (686)
T 1qho_A 81 LAGTDNTGYHGYWTRDFKQIE-EHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNY 159 (686)
T ss_dssp CSSTTCCCTTSCSEEEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBTTBTTSTTTTCEEETTEEEECS
T ss_pred cccCCCCCcCCcCcccccccC-cccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccccCccccCCcccccC
Confidence 367999999999999 999999999999999999999999999999999987421 111111111110 00
Q ss_pred CCCC-CCcccccCC-CccCCCCCCCCCCCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHH
Q 014447 138 RLDW-GPSFICRGD-KEYSDGQGNDDTGEDF-----QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS 210 (424)
Q Consensus 138 ~~~w-~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~ 210 (424)
+.+| ...++..+. ..|.+....++ +.+ .++||||++||+||++|++++++|++ +||||||+|++++++.+
T Consensus 160 ~~~~~~~~f~~~~~i~~w~~~~~~~y--~~~~~~~~~~~pDLn~~np~Vr~~l~~~~~~Wl~-~GVDGfRlDa~~~i~~~ 236 (686)
T 1qho_A 160 FDDATKGYFHHNGDISNWDDRYEAQW--KNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVA-HGADGLRIDAVKHFNSG 236 (686)
T ss_dssp SSCTTTCCBCCSCBCSCTTCHHHHHH--SBCEETTTEEEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCHH
T ss_pred CCCcccCeeecCCCcCcCCCCcccce--eecccCCcCCCCccccCCHHHHHHHHHHHHHHHh-cCCCEEEEeccccCCHH
Confidence 1111 111211111 22321110111 111 46899999999999999999999999 99999999999999999
Q ss_pred HHHHHHH---hcCCCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc---hhhhh
Q 014447 211 ITKVYME---NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG---ELWRL 284 (424)
Q Consensus 211 ~~~~~~~---~~~p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~---~~~~~ 284 (424)
||+++.+ +.+|.+++||+|.... . .........|.... ..++|+|++...+..++.+ ....+
T Consensus 237 f~~~~~~~v~~~~~~~~vgE~~~~~~------~----~~~~~~~~~~~~~~--~~~~~df~~~~~~~~~~~~~~~~~~~l 304 (686)
T 1qho_A 237 FSKSLADKLYQKKDIFLVGEWYGDDP------G----TANHLEKVRYANNS--GVNVLDFDLNTVIRNVFGTFTQTMYDL 304 (686)
T ss_dssp HHHHHHHHHHHHCCCEEEECCCCCCT------T----STTHHHHHHHHHHS--SCEEBCHHHHHHHHHHHTSCSSCHHHH
T ss_pred HHHHHHHHHHhcCCceEEeeeecCCC------c----ccchhhhhhhcccC--CCeeeccHHHHHHHHHHhcCCCCHHHH
Confidence 9999844 4467889999985410 0 00123455666532 2457899988888777643 22222
Q ss_pred hhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCCC---------------c
Q 014447 285 KDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFD---------------W 349 (424)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~~---------------w 349 (424)
........... ..+...++|++|||++|..+. ..+.+++++|++++|++||+|+||||+|++ |
T Consensus 305 ~~~l~~~~~~~-~~~~~~~~fl~NHD~~R~~s~-~~~~~~~~~a~a~llt~pG~P~IYyG~E~g~~~~~d~~~R~~~~~~ 382 (686)
T 1qho_A 305 NNMVNQTGNEY-KYKENLITFIDNHDMSRFLSV-NSNKANLHQALAFILTSRGTPSIYYGTEQYMAGGNDPYNRGMMPAF 382 (686)
T ss_dssp HHHHHHHHHHC-TTGGGCEECSCCTTSCCHHHH-CCCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTTTCCCCCCC
T ss_pred HHHHHHHHHhc-cchhhceeeccCCCCcccccc-CCCHHHHHHHHHHHHcCCCcCEEEecccccccCCCCccccccCCCC
Confidence 22111000000 023456899999999999873 335568999999999999999999999753 2
Q ss_pred ----chHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEE---CCEEEEEECCCC
Q 014447 350 ----GLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAI---GDRVIMKIGPKM 399 (424)
Q Consensus 350 ----~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r---~~~~lv~ln~~~ 399 (424)
+++++||+|++||+++|+|+.|.++.+..++++++|.| +++++|++|.+.
T Consensus 383 ~~~~~~~~~~~~Li~lRk~~~al~~G~~~~~~~~~~v~af~R~~~~~~~lV~~N~~~ 439 (686)
T 1qho_A 383 DTTTTAFKEVSTLAGLRRNNAAIQYGTTTQRWINNDVYIYERKFFNDVVLVAINRNT 439 (686)
T ss_dssp CTTSHHHHHHHHHHHHHHHCHHHHHCEEEEEEECSSEEEEEEEETTEEEEEEEECCT
T ss_pred CCCcHHHHHHHHHHHHHhhCHHhhcCceEEEeeCCCEEEEEEECCCcEEEEEEECCC
Confidence 48899999999999999999999988888889999999 578889999863
|
| >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-60 Score=489.87 Aligned_cols=355 Identities=26% Similarity=0.420 Sum_probs=261.7
Q ss_pred CCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccC---------CCCCCCCC
Q 014447 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYD---------LDASKYGS 89 (424)
Q Consensus 21 ~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~---------id~~~~Gt 89 (424)
.++.||||+|.|+... ++|||+||+++|+|||+||||+|||+||++++ .+|||++.||++ || |+|||
T Consensus 3 ~~~~v~~q~F~W~~~~-~gG~~~gi~~~LdyLk~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~l~~f~~~~~id-p~~Gt 80 (515)
T 1hvx_A 3 PFNGTMMQYFEWYLPD-DGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVR-TKYGT 80 (515)
T ss_dssp CCCCCEEECCCTTCCS-SSCHHHHHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSS-CSSCC
T ss_pred CCCceEEEEEEccCCC-CCCcHHHHHHHHHHHHhcCCCEEEeCCcccCCCCCCCCcCeecccccccccccCccC-CCCCC
Confidence 3678999999999886 48999999999999999999999999999954 689999999997 99 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCC--CCCC-------CC------------cceee--cCCC-CCCCCCCCCCcc
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTA--ERKD-------GR------------GIYCI--FEGG-TSDDRLDWGPSF 145 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~--~~~~-------~~------------~~~~~--~~~~-~~~~~~~w~~~~ 145 (424)
++||++||++||++||+||||+|+||++. .|+. +. ..|.. |++. .+.....|....
T Consensus 81 ~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~d~~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~pg~~~~y~~~~~~~~~ 160 (515)
T 1hvx_A 81 KAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYH 160 (515)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGG
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCCccCCCcccceeEEEecCcccccccccccccccccccccCCCCCccccCcccccc
Confidence 99999999999999999999999999974 2210 00 00110 1110 011111111000
Q ss_pred ccc-----------------CCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC
Q 014447 146 ICR-----------------GDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 208 (424)
Q Consensus 146 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~ 208 (424)
... ....|.+........+.+..+||||++||+||++|++++++|++++||||||+|+|++++
T Consensus 161 ~~~~d~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~dLn~~np~V~~~l~~~~~~w~~~~gvDGfRlDaa~~i~ 240 (515)
T 1hvx_A 161 FDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIK 240 (515)
T ss_dssp EEEEEEETTTTEEEEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSC
T ss_pred cCCCCccccccccccccccCCCCCcccccccccCccccccCCccCCCCHHHHHHHHHHHHHHHHhcCCCEEEEehhhhcC
Confidence 000 011222110011122344567999999999999999999999988999999999999999
Q ss_pred HHHHHHHHHh----cCC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc-hhh
Q 014447 209 PSITKVYMEN----TSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELW 282 (424)
Q Consensus 209 ~~~~~~~~~~----~~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~-~~~ 282 (424)
.+||+++.++ .+| .++|||+|... ...+..|+...++..+.|||++...+..++.+ ...
T Consensus 241 ~~f~~~~~~~v~~~~~~~~~~igE~~~~~---------------~~~~~~y~~~~~~~~~~fd~~~~~~~~~~~~~~~~~ 305 (515)
T 1hvx_A 241 FSFFPDWLSYVRSQTGKPLFTVGEYWSYD---------------INKLHNYIMKTNGTMSLFDAPLHNKFYTASKSGGTF 305 (515)
T ss_dssp TTHHHHHHHHHHHHHCCCCEEEECCCCSC---------------HHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEEecCCC---------------hHHHHHHHhccCCcceeecHHHHHHHHHHHhcCCch
Confidence 9999998543 456 78999998631 45667888766666788999988888877643 221
Q ss_pred hhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCC-chhHHHHHHHHHcCC-CeeEEecCCCCCc------chHHH
Q 014447 283 RLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP-SDKVMLGYAYILTHP-GTPCIFYDHFFDW------GLKEA 354 (424)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~-~~~~~~a~a~~l~~p-G~P~iyyG~~~~w------~l~~~ 354 (424)
.+..... ..+....|..+++|++|||+.|..+..+.. ....++|++++|++| |+|+||||+|++- .+.++
T Consensus 306 ~l~~~~~--~~~~~~~~~~~~~fl~nHD~~r~~s~~~~~~~~~~~la~a~~l~~~~G~P~iyyG~E~G~~~~~d~~~~~~ 383 (515)
T 1hvx_A 306 DMRTLMT--NTLMKDQPTLAVTFVDNHDTEPGQALQSWVDPWFKPLAYAFILTRQEGYPCVFYGDYYGIPQYNIPSLKSK 383 (515)
T ss_dssp CGGGTTT--TCHHHHCGGGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCBGGGTBCCCHHH
T ss_pred hHHHHHH--hhHhhcCCccceEEeccccCCcchhcccchhhHHHHHHHHHHHhCCCCceEEEeccccCCCCCCCchHHHH
Confidence 2222211 111112355678999999999998766432 235789999999997 9999999999875 48999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEEC---C----EEEEEECC
Q 014447 355 ISKLAAVRNRNGINTASRVNILASDADVYIAAIG---D----RVIMKIGP 397 (424)
Q Consensus 355 ~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r~---~----~~lv~ln~ 397 (424)
|++|++||++ ++.|.+..+..++++++|.|. + .++|++||
T Consensus 384 ~~~L~~lR~~---~~~g~~~~~~~~~~~~af~R~~~~~~~~~~~vvvi~N 430 (515)
T 1hvx_A 384 IDPLLIARRD---YAYGTQHDYLDHSDIIGWTREGVTEKPGSGLAALITD 430 (515)
T ss_dssp HHHHHHHHHH---TCCSCEEEECCSSSEEEEEECCBTTBTTCCEEEEEES
T ss_pred HHHHHHHHHH---hccCCceeEecCCCEEEEEEECCCCCCCCCEEEEEEC
Confidence 9999999999 467888887778899999993 2 46666555
|
| >1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-61 Score=496.26 Aligned_cols=363 Identities=17% Similarity=0.272 Sum_probs=269.8
Q ss_pred CCCCCCceEEEeecCCC----CCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccccCCCCCCCCCHHH
Q 014447 18 LPFTSPALLFQGFNWES----SNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQAD 92 (424)
Q Consensus 18 p~~~~~~v~~~~f~~ds----~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~ed 92 (424)
|.|+++.|+||+|. ++ .++++|||+||+++|+|||+||||+|||+||++++. +|||++.||++|| |+|||++|
T Consensus 3 ~~w~~~~viYqi~~-~~F~d~~~dg~Gdl~gi~~~ldyl~~LGv~~I~l~Pi~~~~~~~~GYd~~dy~~id-~~~Gt~~d 80 (558)
T 1uok_A 3 KQWWKESVVYQIYP-RSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIM-NEFGTMED 80 (558)
T ss_dssp CCHHHHCCEEEECG-GGTCCSSSSSSCCHHHHHTTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEEC-GGGCCHHH
T ss_pred chhhhcCeEEEEec-HHhcCCCCCCcCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCcccccccC-cccCCHHH
Confidence 88999999999996 44 455689999999999999999999999999999986 6999999999999 99999999
Q ss_pred HHHHHHHHHHcCCEEEEeeecccCCCCCCC----------CCcceeecCCCCC-CCCCCCCCcccccCCCccCCCCCCCC
Q 014447 93 LKSLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTS-DDRLDWGPSFICRGDKEYSDGQGNDD 161 (424)
Q Consensus 93 l~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~----------~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~ 161 (424)
|++||++||++||+||||+|+||||.+|+. +..+|+.|.++.. ..+.+|...+. ...+.|.+..++++
T Consensus 81 f~~lv~~~h~~Gi~VilD~V~NH~s~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~~~~~f~-~~~w~~~~~~~~~y 159 (558)
T 1uok_A 81 WDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFS-GSAWQYDEMTDEYY 159 (558)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCSSSSCSSCBBCTTS-SBSEEEETTTTEEE
T ss_pred HHHHHHHHHHCCCEEEEEEecccccccchHHHHHhcCCCCCcccceEeccCcCCCCCccccccCC-CccccccCCcCcEE
Confidence 999999999999999999999999998741 2234555544211 12234443321 12223334455677
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH----------------------------HHHH
Q 014447 162 TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP----------------------------SITK 213 (424)
Q Consensus 162 ~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~----------------------------~~~~ 213 (424)
.+.+...+||||++||+||++|++++++|++ +||||||+|+|++++. +|++
T Consensus 160 ~~~f~~~~pdLn~~np~Vr~~i~~~~~~W~~-~gvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 238 (558)
T 1uok_A 160 LHLFSKKQPDLNWDNEKVRQDVYEMMKFWLE-KGIDGFRMDVINFISKEEGLPTVETEEEGYVSGHKHFMNGPNIHKYLH 238 (558)
T ss_dssp ECSSCTTSCBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCCCTTCCCCCCCCSSCBCCGGGTTTCTTHHHHHH
T ss_pred eeccccccccccCCCHHHHHHHHHHHHHHHH-cCCCEEEEccccccccccccCCCCCcccccccccccccCChHHHHHHH
Confidence 7778899999999999999999999999998 9999999999998764 4677
Q ss_pred HHHH---hcCCCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHh-cCCceeeecccchHHHHH---Hhc-c--hhhh
Q 014447 214 VYME---NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGILQA---AVQ-G--ELWR 283 (424)
Q Consensus 214 ~~~~---~~~p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~df~~~~~~~~---~~~-~--~~~~ 283 (424)
++.+ ...+.++|||+|... ...+..|+.. ..++++.|+|........ .+. + +...
T Consensus 239 ~~~~~~~~~~~~~~vgE~~~~~---------------~~~~~~y~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 303 (558)
T 1uok_A 239 EMNEEVLSHYDIMTVGEMPGVT---------------TEEAKLYTGEERKELQMVFQFEHMDLDSGEGGKWDVKPCSLLT 303 (558)
T ss_dssp HHHHHTGGGSCCEEEEECTTCC---------------HHHHHHHHCGGGCSCSCEECCGGGSTTEETTEEEEECCCCHHH
T ss_pred HHHHHhhccCCeEEEEeccCCC---------------HHHHHHHhccCCCccceEEehhhhhcccccccccccCCCCHHH
Confidence 7643 223588999999521 4566677764 346777888875421000 000 0 0111
Q ss_pred hhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCc----hhHHHHHHHHHcCCCeeEEecCCCC------------
Q 014447 284 LKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS----DKVMLGYAYILTHPGTPCIFYDHFF------------ 347 (424)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~----~~~~~a~a~~l~~pG~P~iyyG~~~------------ 347 (424)
+............ .+...++|++|||++|..+..+... ++.++|++++|++||+|+||||+|+
T Consensus 304 l~~~l~~~~~~~~-~~~~~~~fl~NHD~~R~~~~~g~~~~~~~~~~k~~~~~llt~pG~P~iy~G~E~G~~~~~~~~~~~ 382 (558)
T 1uok_A 304 LKENLTKWQKALE-HTGWNSLYWNNHDQPRVVSRFGNDGMYRIESAKMLATVLHMMKGTPYIYQGEEIGMTNVRFESIDE 382 (558)
T ss_dssp HHHHHHHHHHHTS-SSSCCEECSCCTTSCCHHHHTSCSSTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCCSSGGG
T ss_pred HHHHHHHHHHhcc-cCCccceeecCCCccchhhhcCCchhhhHHHHHHHHHHHHhCCCceEEEechhcCccCCCCCCHHh
Confidence 1111000000000 1123478999999999877665332 2589999999999999999999852
Q ss_pred ----------------------------------------Cc----------------------------------chHH
Q 014447 348 ----------------------------------------DW----------------------------------GLKE 353 (424)
Q Consensus 348 ----------------------------------------~w----------------------------------~l~~ 353 (424)
+| +++.
T Consensus 383 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~sRd~~R~pm~W~~~~~agFs~~~pwl~~~~~~~~~nv~~q~~~~~s~~~ 462 (558)
T 1uok_A 383 YRDIETLNMYKEKVMERGEDIEKVMQSIYIKGRDNARTPMQWDDQNHAGFTTGEPWITVNPNYKEINVKQAIQNKDSIFY 462 (558)
T ss_dssp CCCHHHHHHHHHHHHTSCCCHHHHHHHHHHHCGGGGTSCCCCCSSTTTTSCSSCCSSCCCGGGGTSSHHHHHHCTTSHHH
T ss_pred hcChhhhcchhhhhhhcCCcHHHhhhhhccccCCCCcCCccCCCcCCCCCcCCCCCCcCCccccccCHHHHhhccccHHH
Confidence 23 3788
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEe-cCCCEEEEEE---CCEEEEEECCCCC
Q 014447 354 AISKLAAVRNRNGINTASRVNILA-SDADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 354 ~~~~L~~lR~~~~al~~G~~~~~~-~~~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
+||+|++||+++|+|+.|.++.+. .++++++|.| +++++|++|.+..
T Consensus 463 ~y~~Li~lRk~~~~l~~G~~~~~~~~~~~v~a~~R~~~~~~~lvv~N~s~~ 513 (558)
T 1uok_A 463 YYKKLIELRKNNEIVVYGSYDLILENNPSIFAYVRTYGVEKLLVIANFTAE 513 (558)
T ss_dssp HHHHHHHHHHHCHHHHHCEEEEESTTCSSEEEEEEEETTEEEEEEEECSSS
T ss_pred HHHHHHHHHccCccccccceEEeecCCCCEEEEEEEeCCcEEEEEEECCCC
Confidence 999999999999999999999874 4668999999 5688899997643
|
| >1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-61 Score=497.60 Aligned_cols=367 Identities=18% Similarity=0.252 Sum_probs=271.6
Q ss_pred hccCCCCCCceEEEeecC---CCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccccCCCCCCCCCH
Q 014447 15 AIFLPFTSPALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQ 90 (424)
Q Consensus 15 ~~~p~~~~~~v~~~~f~~---ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~ 90 (424)
...|.|+++.|+||+|.. |+.++++|||+||+++|+|||+||||+|||+||++++. +|||++.||++|| |+|||+
T Consensus 14 ~~~~~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~~GYd~~dy~~id-p~~Gt~ 92 (570)
T 1m53_A 14 SEYPAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIM-KEYGTM 92 (570)
T ss_dssp -CCCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEEC-GGGCCH
T ss_pred ccCchhHhhCcEEEEechhhccCCCCCccCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCcccccccC-cccCCH
Confidence 346899999999999972 33445689999999999999999999999999999986 6999999999999 999999
Q ss_pred HHHHHHHHHHHHcCCEEEEeeecccCCCCCC----------CCCcceeecCCCCC-CCCCCCCCcccccCCCccCCCCCC
Q 014447 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERK----------DGRGIYCIFEGGTS-DDRLDWGPSFICRGDKEYSDGQGN 159 (424)
Q Consensus 91 edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~----------~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~ 159 (424)
+||++||++||++||+||||+|+||||.+|+ .+..+|+.|.++.. ..+.+|...+. +..+.|....++
T Consensus 93 ~df~~lv~~aH~~Gi~VilD~V~NH~s~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~~~~~f~-~~~w~~~~~~~~ 171 (570)
T 1m53_A 93 EDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFG-GSAWQKDAKSGQ 171 (570)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHCTTCTTGGGBCEECCSSSSCSSCCBCTTS-SBSEEECTTTCC
T ss_pred HHHHHHHHHHHHCCCEEEEEEeccccccccHHHHHhhcCCCCCCccceeecCCCCCCCCccccccCC-CccccccCCCCc
Confidence 9999999999999999999999999999874 12234665554321 12334543332 222334445567
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH--------------------------HHHH
Q 014447 160 DDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP--------------------------SITK 213 (424)
Q Consensus 160 ~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~--------------------------~~~~ 213 (424)
++.+.+...+||||++||+||++|++++++|++ +||||||+|+|++++. +|++
T Consensus 172 ~y~~~f~~~~pdLN~~np~Vr~~l~~~~~~Wl~-~gvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 250 (570)
T 1m53_A 172 YYLHYFARQQPDLNWDNPKVREDLYAMLRFWLD-KGVSGMRFDTVATYSKIPGFPNLTPEQQKNFAEQYTMGPNIHRYIQ 250 (570)
T ss_dssp EEECSSCTTCCBBCTTSHHHHHHHHHHHHHHHT-TTCCEEEETTGGGSSCCTTCCCCCHHHHHTHHHHTTCCTTHHHHHH
T ss_pred EEECcccCcCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEccccccccccccccCCCcccccccccccCchHHHHHHH
Confidence 777888899999999999999999999999997 9999999999998864 4677
Q ss_pred HHHH---hcCCCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHh-cCCceeeecccchHHHHH---Hhc-c--hhhh
Q 014447 214 VYME---NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGILQA---AVQ-G--ELWR 283 (424)
Q Consensus 214 ~~~~---~~~p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~df~~~~~~~~---~~~-~--~~~~ 283 (424)
++.+ ...+.++|||+|... ...+..|+.. ..++++.|+|........ .+. + ....
T Consensus 251 ~~~~~v~~~~~~~~vgE~~~~~---------------~~~~~~y~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 315 (570)
T 1m53_A 251 EMNRKVLSRYDVATAGEIFGVP---------------LDRSSQFFDRRRHELNMAFMFDLIRLDRDSNERWRHKSWSLSQ 315 (570)
T ss_dssp HHHHHTGGGSCCEEEEECTTCC---------------GGGTHHHHCGGGCSCSEEECCTTTTTTBCSSCTTCBCCCCHHH
T ss_pred HHHHHHhccCCeEEEecccCCC---------------HHHHHHHhcccCcccceeechhhhhcccccccccccCCCCHHH
Confidence 6643 223488999999531 3455677654 346777888875421000 000 0 0111
Q ss_pred hhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCc-----hhHHHHHHHHHcCCCeeEEecCCCC-----------
Q 014447 284 LKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS-----DKVMLGYAYILTHPGTPCIFYDHFF----------- 347 (424)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~-----~~~~~a~a~~l~~pG~P~iyyG~~~----------- 347 (424)
+............ .+...++|++|||++|..+..+... ++.++|++++|++||+|+||||+|+
T Consensus 316 l~~~l~~~~~~~~-~~~~~~~fl~nHD~~R~~~~~~~~~~~~~~~~~k~~~~~llt~pG~P~iy~G~E~G~~~~~~~~~~ 394 (570)
T 1m53_A 316 FRQIISKMDVTVG-KYGWNTFFLDNHDNPRAVSHFGDDRPQWREASAKALATITLTQRATPFIYQGSELGMTNYPFRQLN 394 (570)
T ss_dssp HHHHHHHHHHHHT-TTCCBEECSCCTTSCCHHHHHSCCSTTTHHHHHHHHHHHHTSSSSEEEEETTTTTTCCCCCCCSGG
T ss_pred HHHHHHHHHHhcc-cCCcccccCCCCCchhhHHhhCCCchhHHHHHHHHHHHHHHhCCCCeEEEechhcCCCCCCCCCHH
Confidence 1111100000000 1133478999999999877654322 2589999999999999999999853
Q ss_pred -----------------------------------------Cc----------------------------------chH
Q 014447 348 -----------------------------------------DW----------------------------------GLK 352 (424)
Q Consensus 348 -----------------------------------------~w----------------------------------~l~ 352 (424)
+| +++
T Consensus 395 ~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~~rd~~R~pm~W~~~~~agFs~~~pwl~~~~~~~~~nv~~q~~~~~s~~ 474 (570)
T 1m53_A 395 EFDDIEVKGFWQDYVQSGKVTATEFLDNVRLTSRDNSRTPFQWNDTLNAGFTRGKPWFHINPNYVEINAEREETREDSVL 474 (570)
T ss_dssp GCCCHHHHHHHHHHTTTTSSCHHHHHHHHHHHCGGGGCSCCCCSSSGGGGSCSSCCSSCCCGGGGTSCHHHHHHCTTSHH
T ss_pred hccCHHHhcchhhhhhcCCccHHHHhhhhhcccCCCCCCCcccCCCCCCCCcCCCCCCcCCcccccccHHHhhhccchHH
Confidence 23 277
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEe-cCCCEEEEEE---CCEEEEEECCCCC
Q 014447 353 EAISKLAAVRNRNGINTASRVNILA-SDADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 353 ~~~~~L~~lR~~~~al~~G~~~~~~-~~~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
.+||+|++||+++|+|+.|.++++. .++++++|.| +++++|++|.+..
T Consensus 475 ~~~~~Li~lR~~~~~l~~G~~~~~~~~~~~v~a~~R~~~~~~~lvv~N~s~~ 526 (570)
T 1m53_A 475 NYYKKMIQLRHHIPALVYGAYQDLNPQDNTVYAYTRTLGNERYLVVVNFKEY 526 (570)
T ss_dssp HHHHHHHHHHHHCHHHHHSEEEESCTTCSSEEEEEEEETTEEEEEEEECSSS
T ss_pred HHHHHHHHHHcCCchhhccceEEeecCCCCEEEEEEECCCcEEEEEEECCCC
Confidence 8999999999999999999999864 4668999999 4688899997643
|
| >2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-61 Score=493.93 Aligned_cols=351 Identities=20% Similarity=0.286 Sum_probs=257.7
Q ss_pred CCCCCCceEEEeecCCCC----CCC------------CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--------CCCC
Q 014447 18 LPFTSPALLFQGFNWESS----NKA------------GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------APQG 73 (424)
Q Consensus 18 p~~~~~~v~~~~f~~ds~----~~~------------~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--------~~~g 73 (424)
|.|+++.||||+|. +++ +++ +|||+||+++|+|||+||||+|||+||++++ ++||
T Consensus 3 ~~~w~~~viYqi~~-~~F~~~~~~~~~~~~~~~~~~~gG~~~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~~~~~~~~~G 81 (484)
T 2aaa_A 3 AASWRTQSIYFLLT-DRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHG 81 (484)
T ss_dssp HHHHTTCCEEECCH-HHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTTS
T ss_pred hhhhccCcEEEEeC-ccccCCCCCCCCCCCccccccCCCCHHHHHHHHHHHHhcCCCEEEeCccccCcccccccCCCCCC
Confidence 33447789999995 332 222 5999999999999999999999999999964 5699
Q ss_pred CCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccC-CCc
Q 014447 74 YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRG-DKE 152 (424)
Q Consensus 74 Y~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~ 152 (424)
|++.||++|| |+|||++|||+||++||++||+||||+|+||++.+++....+|..|.. .++...+.... ...
T Consensus 82 Y~~~dy~~id-~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~d~~~~~~------~~~~~~~~~~~~~~~ 154 (484)
T 2aaa_A 82 YWQQKIYDVN-SNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDP------FDSSSYFHPYCLITD 154 (484)
T ss_dssp CSEEEEEEEC-TTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCBSSCGGGCCGGGSBS------CCSGGGBCCCCBCCC
T ss_pred cCcccccccC-cccCCHHHHHHHHHHHHHCCCEEEEEECcCCcCCCCCCCccccccccc------CCcccccCCCCCccc
Confidence 9999999999 999999999999999999999999999999999877533334433321 00000000000 001
Q ss_pred cCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEeeecC
Q 014447 153 YSDGQG--NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWD 230 (424)
Q Consensus 153 ~~~~~~--~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~v~E~~~ 230 (424)
|.+... ....+.+...+||||++||+||++|++++++|++++||||||+|+|++++.+||+++.+. .+.+++||+|.
T Consensus 155 ~~~~~~~~~~w~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~~~~i~~~f~~~~~~~-~~~~~igE~~~ 233 (484)
T 2aaa_A 155 WDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNKA-SGVYCVGEIDN 233 (484)
T ss_dssp TTCHHHHHHSBEECSSSEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEESCSTTSCGGGHHHHHHH-HTSEEEECCCC
T ss_pred CCCCccccccccccCccccCccccCCHHHHHHHHHHHHHHHHhcCCCEEEecccccCCHHHHHHHHhc-CCcEEEecCCC
Confidence 111100 011123446799999999999999999999999989999999999999999999999775 34889999996
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhc---chhhhhhhhcCCCCCCcCcCCCcceeccc
Q 014447 231 SLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ---GELWRLKDSNGKPPGFIGILPQNAVTFID 307 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 307 (424)
.. ...+..|. ++++++++|++...+..++. +....+........... ..+...++|++
T Consensus 234 ~~---------------~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~f~~ 294 (484)
T 2aaa_A 234 GN---------------PASDCPYQ---KVLDGVLNYPIYWQLLYAFESSSGSISNLYNMIKSVASDC-SDPTLLGNFIE 294 (484)
T ss_dssp SC---------------HHHHGGGG---GTSSEEBCHHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHC-SCGGGSEECSC
T ss_pred CC---------------hHHHHhhc---ccCCceeccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-CChhhhceecc
Confidence 31 22333333 34777899998888887764 23333332211000000 01345689999
Q ss_pred CCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCCC-------------c--------chHHHHHHHHHHHHhcC
Q 014447 308 NHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFD-------------W--------GLKEAISKLAAVRNRNG 366 (424)
Q Consensus 308 nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~~-------------w--------~l~~~~~~L~~lR~~~~ 366 (424)
|||+.|..+... +.++.++|++++|++||+|+||||+|++ | +++++||+|++||++++
T Consensus 295 nHD~~r~~~~~~-~~~~~~~a~a~~l~~~G~P~iy~G~E~g~~~~~d~~~r~~~W~~~~~~~~~l~~~~~~Li~lRk~~~ 373 (484)
T 2aaa_A 295 NHDNPRFAKYTS-DYSQAKNVLSYIFLSDGIPIVYAGEEQHYAGGKVPYNREATWLSGYDTSAELYTWIATTNAIRKLAI 373 (484)
T ss_dssp CTTSCCGGGTCC-CHHHHHHHHHHHHHSSSEEEEETTTTTTCCCCTTTTTCCCGGGGTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCccccccccC-CHHHHHHHHHHHHhcCCccEEEecccccccCCCCcchhhhccccCCCCchHHHHHHHHHHHHHHhch
Confidence 999999988764 5678999999999999999999999865 2 37999999999999997
Q ss_pred CCC----CCCeEEEecCCCEEEEEEC---CEEE-EEECC
Q 014447 367 INT----ASRVNILASDADVYIAAIG---DRVI-MKIGP 397 (424)
Q Consensus 367 al~----~G~~~~~~~~~~v~~~~r~---~~~l-v~ln~ 397 (424)
+++ .|.+.++..++++++|.|. ++.+ |++|.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~af~R~~~~~~~~~v~~N~ 412 (484)
T 2aaa_A 374 AADSAYITYANDAFYTDSNTIAMAKGTSGSQVITVLSNK 412 (484)
T ss_dssp HHCTTTTTSCCEEEEEETTEEEEEESSTTTCEEEEEECS
T ss_pred hhcccccccceeEEEeCCCEEEEEEEcCCCcEEEEEEcC
Confidence 764 3556677777899999993 2444 55554
|
| >1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-60 Score=491.92 Aligned_cols=364 Identities=20% Similarity=0.292 Sum_probs=269.4
Q ss_pred cCCCCCCceEEEeecCCC----CCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccccCCCCCCCCCHH
Q 014447 17 FLPFTSPALLFQGFNWES----SNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQA 91 (424)
Q Consensus 17 ~p~~~~~~v~~~~f~~ds----~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~e 91 (424)
.|.|++..|+||+|. ++ .++++|||+||+++|+|||+||||+||||||++++. +|||++.||++|| |+|||++
T Consensus 3 ~~~w~~~~viYqi~~-~~F~~~~~dg~Gdl~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~GYd~~dy~~id-p~~Gt~~ 80 (557)
T 1zja_A 3 GAPWWKSAVFYQVYP-RSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVM-KEYGTME 80 (557)
T ss_dssp CCCHHHHCCEEEECG-GGTCCSSSSSSCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEEC-TTTCCHH
T ss_pred cchhhhcCcEEEEEc-hHhcCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCccCCCCCCCCCcccccccC-cccCCHH
Confidence 588999999999996 44 445689999999999999999999999999999986 6999999999999 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEeeecccCCCCCCC----------CCcceeecCCCCC-CCCCCCCCcccccCCCccCCCCCCC
Q 014447 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTS-DDRLDWGPSFICRGDKEYSDGQGND 160 (424)
Q Consensus 92 dl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~----------~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~ 160 (424)
||++||++||++||+||||+|+|||+.+|+. +..+|+.|.++.. ..+.+|...+. +..+.|....+.+
T Consensus 81 df~~Lv~~aH~~Gi~VilD~V~NHts~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~~~~~f~-~~~w~~~~~~~~~ 159 (557)
T 1zja_A 81 DFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFG-GSAWEKDPVTGQY 159 (557)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCBTTBCSSCCBCTTS-SBSEEEETTTTEE
T ss_pred HHHHHHHHHHHCCCEEEEEEeccccccchhHHHHhhcCCCCCCccceEecCCcCCCCCccccccCC-CccccccCCcCcE
Confidence 9999999999999999999999999988741 2234555544211 12334543331 2223334445667
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH--------------------------HHHHH
Q 014447 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP--------------------------SITKV 214 (424)
Q Consensus 161 ~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~--------------------------~~~~~ 214 (424)
+.+.+...+||||++||+||++|++++++|++ +||||||+|++++++. +|+++
T Consensus 160 y~~~f~~~~pdLN~~np~Vr~~l~~~~~~Wl~-~gvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 238 (557)
T 1zja_A 160 YLHYFGRQQPDLNWDTPKLREELYAMLRFWLD-KGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQGPNLHRYLQE 238 (557)
T ss_dssp EECSSCTTSCBBCTTCHHHHHHHHHHHHHHHT-TTCCEEEETTGGGSSCCTTCCCCCHHHHHTHHHHTTCCTTHHHHHHH
T ss_pred EEecccccCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEeecchhhcccccccCcCCCcccccccccccCChHHHHHHHH
Confidence 77778899999999999999999999999997 9999999999998753 46777
Q ss_pred HHH---hcCCCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHh-cCCceeeecccchHHHH--HHhc-c--hhhhhh
Q 014447 215 YME---NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGILQ--AAVQ-G--ELWRLK 285 (424)
Q Consensus 215 ~~~---~~~p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~df~~~~~~~--~~~~-~--~~~~~~ 285 (424)
+.+ ...++++|||+|... ...+..|... ..++++.|+|....... ..+. + ....+.
T Consensus 239 ~~~~v~~~~~~~~igE~~~~~---------------~~~~~~y~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 303 (557)
T 1zja_A 239 MHEKVFDHYDAVTAGEIFGAP---------------LNQVPLFIDSRRKELDMAFTFDLIRYDRALDRWHTIPRTLADFR 303 (557)
T ss_dssp HHHHTGGGSCCEEEEECCSCC---------------GGGHHHHHCGGGCSCSEEECCTTTTTTBCTTSSCBCCCCHHHHH
T ss_pred HHHHHhccCCeEEEEeccCCC---------------HHHHHHHhccCCCcccEEEehhhhhhcccccccccCCCCHHHHH
Confidence 644 223588999998531 3456677754 24677788886541100 0000 0 011111
Q ss_pred hhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCc-----hhHHHHHHHHHcCCCeeEEecCCCC-------------
Q 014447 286 DSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS-----DKVMLGYAYILTHPGTPCIFYDHFF------------- 347 (424)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~-----~~~~~a~a~~l~~pG~P~iyyG~~~------------- 347 (424)
........... .+...++|++|||++|..+.++... ++.++|+++++++||+|+||||||+
T Consensus 304 ~~l~~~~~~~~-~~~~~~~fl~nHD~~R~~~~~~~~~~~~~~~~~k~~~~~llt~pG~P~iy~G~E~G~~~~~~~~~~~~ 382 (557)
T 1zja_A 304 QTIDKVDAIAG-EYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDF 382 (557)
T ss_dssp HHHHHHHHHHT-TTCCBEECSCCTTSCCHHHHHSCCSTTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCCCSGGGC
T ss_pred HHHHHHHHhcc-cCCccceeccCCCCcchhhhhCCCchhhHHHHHHHHHHHHHhCCCceEEEecccccccCCCcCCHHHc
Confidence 11000000000 1123478999999999876654322 2589999999999999999999853
Q ss_pred ---------------------------------------Cc----------------------------------chHHH
Q 014447 348 ---------------------------------------DW----------------------------------GLKEA 354 (424)
Q Consensus 348 ---------------------------------------~w----------------------------------~l~~~ 354 (424)
+| +++.+
T Consensus 383 ~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~rd~~R~pm~W~~~~~~gFs~~~pwl~~~~~~~~~nv~~q~~~~~s~~~~ 462 (557)
T 1zja_A 383 DDIEVKGFFQDYVETGKATAEELLTNVALTSRDNARTPFQWDDSANAGFTTGKPWLKVNPNYTEINAAREIGDPKSVYSF 462 (557)
T ss_dssp CCHHHHHHHHHHTTTTSSCHHHHHHHHHHHCGGGGCSCCCCSSSGGGGSCSSCCSSCCCGGGGTSCHHHHHTCTTSHHHH
T ss_pred cCHHHhhhHHHHhhcCCccHHHHHhhhccccCCCCcCCccCCCCCCCCCCCCCCCCcCCccccccCHHHHhcccchHHHH
Confidence 22 37889
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEe-cCCCEEEEEE---CCEEEEEECCCCC
Q 014447 355 ISKLAAVRNRNGINTASRVNILA-SDADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 355 ~~~L~~lR~~~~al~~G~~~~~~-~~~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
||+|++||+++|+|+.|.++.+. .++++++|.| +++++|++|.+..
T Consensus 463 ~~~Li~lRk~~~~l~~g~~~~~~~~~~~v~a~~R~~~~~~~lvv~N~s~~ 512 (557)
T 1zja_A 463 YRNLISIRHETPALSTGSYRDIDPSNADVYAYTRSQDGETYLVVVNFKAE 512 (557)
T ss_dssp HHHHHHHHHHCTHHHHSEEEESCTTCSSEEEEEEEETTEEEEEEEECSSS
T ss_pred HHHHHHHHccCchhhcceEEEeecCCCcEEEEEEEcCCceEEEEEECCCC
Confidence 99999999999999999998864 4668999999 4578888997643
|
| >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-61 Score=484.30 Aligned_cols=358 Identities=16% Similarity=0.235 Sum_probs=267.8
Q ss_pred hhccCCCCCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC-------CCCCCcccccCCCCCC
Q 014447 14 LAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-------PQGYMPGRLYDLDASK 86 (424)
Q Consensus 14 ~~~~p~~~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~-------~~gY~~~d~~~id~~~ 86 (424)
+...|.|+++.|+||+|. +++.+ +|||+||+++|+|||+|||++|||+||++++. ++||++.||++|| |+
T Consensus 3 ~~~~~~w~~~~viYei~~-~~f~~-~G~~~~i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~gY~~~dy~~i~-~~ 79 (449)
T 3dhu_A 3 LRDTQTQLRNEMIYSVFV-RNYSE-AGNFAGVTADLQRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGIN-PE 79 (449)
T ss_dssp ----CGGGGGCCEEEECH-HHHSS-SCSHHHHHTTHHHHHHHTCSEEEECCCSCBCSTTCCTTTCCTTSBSCTTSCC-GG
T ss_pred CCCCchhhhcCEEEEEEh-hhhCC-CCCHHHHHHhHHHHHHcCCCEEEECCcccccccCCCCCCCCCcCcccccccC-cc
Confidence 345799999999999998 65544 69999999999999999999999999998764 3689999999999 99
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC
Q 014447 87 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF 166 (424)
Q Consensus 87 ~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (424)
|||++||++||++||++||+||+|+|+||++.+++.... .++|+... ....+. .....|
T Consensus 80 ~Gt~~~~~~lv~~~h~~Gi~vi~D~V~NH~~~~~~~~~~------------~~~~~~~~---~~~~~~------~~~~~w 138 (449)
T 3dhu_A 80 YGTLADFKALTDRAHELGMKVMLDIVYNHTSPDSVLATE------------HPEWFYHD---ADGQLT------NKVGDW 138 (449)
T ss_dssp GCCHHHHHHHHHHHHHTTCEEEEEECCSEECTTSHHHHH------------CGGGBCBC---TTSCBC------CSSTTC
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEccCcCcCccchhhc------------CccceEEC---CCCCcC------CCCCCC
Confidence 999999999999999999999999999999987641000 01222110 000000 012246
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC-CeEEeeecCCCCCCCCCCCCC
Q 014447 167 QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP-DFAVGEKWDSLSYGPDGKPDA 242 (424)
Q Consensus 167 ~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p-~~~v~E~~~~~~~~~~~~~~~ 242 (424)
.++||||++||+||++|++++++|++ . |||||+|+|++++++||+++ +++.+| .+++||+|..
T Consensus 139 ~~~~dLn~~np~Vr~~l~~~l~~w~~-~-vDGfRlDaa~~~~~~f~~~~~~~~~~~~p~~~~~gE~~~~----------- 205 (449)
T 3dhu_A 139 SDVKDLDYGHHELWQYQIDTLLYWSQ-F-VDGYRCDVAPLVPLDFWLEARKQVNAKYPETLWLAESAGS----------- 205 (449)
T ss_dssp TTCEEBCTTSHHHHHHHHHHHHHHTT-T-CSEEEETTGGGSCHHHHHHHHHHHHHHSTTCEEEECCCCH-----------
T ss_pred CCCCccCCCCHHHHHHHHHHHHHHHH-h-CCEEEEEChhhCCHHHHHHHHHHHHhhCCCeEEEeccCCc-----------
Confidence 78999999999999999999999999 5 99999999999999999998 445577 7789999852
Q ss_pred CCCCchhHHHHHHHhc-----------CCceeeecccchHHHHHHhcch--hhhhhhhcCCCCCCcCcCCCcceecccCC
Q 014447 243 NQDGHRGALKDWVQAA-----------GGAVAAFDFTTKGILQAAVQGE--LWRLKDSNGKPPGFIGILPQNAVTFIDNH 309 (424)
Q Consensus 243 ~~~~~~~~~~~~~~~~-----------~~~~~~~df~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~nH 309 (424)
....++... ..++..++|.+...+...+.+. ...+............ .+...++|++||
T Consensus 206 -------~~~~~~~~~g~~~~~~~~l~~~fd~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~fl~NH 277 (449)
T 3dhu_A 206 -------GFIEELRSQGYTGLSDSELYQAFDMTYDYDVFGDFKDYWQGRSTVERYVDLLQRQDATFP-GNYVKMRFLENH 277 (449)
T ss_dssp -------HHHHHHHHTTCCCCCHHHHHTTCSEEEGGGTHHHHHHHHTTSSCHHHHHHHHHHHHTTSC-TTCEEEECSCCT
T ss_pred -------hHHHHHHhcCccccccchhhhccCccccHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcC-CchhheeecccC
Confidence 111222111 3467778888877776655443 2222221110001110 123458999999
Q ss_pred CCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC--------------Cc----chHHHHHHHHHHHHhcCCCCCC
Q 014447 310 DTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF--------------DW----GLKEAISKLAAVRNRNGINTAS 371 (424)
Q Consensus 310 D~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~--------------~w----~l~~~~~~L~~lR~~~~al~~G 371 (424)
|++|..+... +.+++++|++++|++||+|+||||+|+ +| ++.++|++|++||++ ++++.|
T Consensus 278 D~~R~~~~~~-~~~~~k~a~a~~lt~pG~P~IyyG~E~g~~~~~d~~~r~~~~W~~~~~~~~~i~~Li~lR~~-~al~~g 355 (449)
T 3dhu_A 278 DNARMMSLMH-SKAEAVNNLTWIFMQRGIPLIYNGQEFLAEHQPSLFDRDTMVADRHGDVTPLIQKLVTIKQL-PLLRAA 355 (449)
T ss_dssp TSCCHHHHCC-SHHHHHHHHHHHHHSSSEEEEETTGGGTCCSCCCSSSCCCCTTCCCCCCHHHHHHHHHHHTS-GGGGCS
T ss_pred CccchhhhcC-CHHHHHHHHHHHHhCCCCcEEEccEecccCCCCCcccCCCcCCCccchHHHHHHHHHHHhhh-HhccCC
Confidence 9999988765 567899999999999999999999864 35 488999999999999 999999
Q ss_pred CeEEEecCCCEEEEEE---CCEEEEEECCCCCC---C-CcCCCCcEEEEeCCcE
Q 014447 372 RVNILASDADVYIAAI---GDRVIMKIGPKMDI---G-NLIPSDFKVAADGTDY 418 (424)
Q Consensus 372 ~~~~~~~~~~v~~~~r---~~~~lv~ln~~~~~---~-~~~~~~~~~~~~~~~~ 418 (424)
.++++..++++++|.| +++++|++|++... . ..+.+.|...++|+.+
T Consensus 356 ~~~~~~~~~~~iaf~R~~~~~~~~vv~N~s~~~~~~~~~lp~g~y~Dvlsg~~~ 409 (449)
T 3dhu_A 356 DYQLAVVEEGIVKITYRAAGEALTAWIPLKGQVTAVATKLAAGSYQNLLTDGPT 409 (449)
T ss_dssp EEEEEECGGGCEEEEEEETTEEEEEEECTTCCEEEEECCSCSEEEEETTTTEEE
T ss_pred ceEEEecCCCEEEEEEEeCCcEEEEEEECCCCceEEEeecCCCeEEEcccCceE
Confidence 9999988889999999 78899999986421 1 1222345555555443
|
| >1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-61 Score=506.66 Aligned_cols=356 Identities=22% Similarity=0.322 Sum_probs=263.2
Q ss_pred CCceEEEeecCCCCCCC----------------------CCcHHHHHhhhh--HHHHcCCCEEEeCCCCCC---------
Q 014447 22 SPALLFQGFNWESSNKA----------------------GGWYNSLKNSIP--DLSNAGITHVWLPPPSQS--------- 68 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~----------------------~G~~~gi~~~L~--ylk~lGv~~I~l~Pi~~~--------- 68 (424)
++.|+||+|. |++.++ +|||+||+++|| |||+|||++|||+||+++
T Consensus 10 ~~~viYqI~p-~rF~d~~~~n~~~~~~~~~~~~~~~~~~gGdl~gi~~kLd~~yLk~LGv~aIwL~Pi~~~~~~~~~~~~ 88 (680)
T 1cyg_A 10 TSDVVYQIVV-DRFVDGNTSNNPSGALFSSGCTNLRKYCGGDWQGIINKINDGYLTDMGVTAIWISQPVENVFSVMNDAS 88 (680)
T ss_dssp TTCCEEEECG-GGTCCSCGGGCCCGGGBCGGGCSTTSBCCCCHHHHHHHHHTSTTTTTTCCEEEECCCEEECCCCCSSSS
T ss_pred ccceEEEEec-ccccCCCCCcCCCCcccCCCccccccccCcCHHHHHhhcCHHHHHhCCCCEEEeCccccCccccccccC
Confidence 8899999997 554331 499999999999 999999999999999984
Q ss_pred --CCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCC---cceeecCCCCC--CCCCCC
Q 014447 69 --VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR---GIYCIFEGGTS--DDRLDW 141 (424)
Q Consensus 69 --~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~---~~~~~~~~~~~--~~~~~w 141 (424)
.++|||++.||++|| |+|||++||++||++||++|||||||+|+||++..|.... .....+.++.. ....+|
T Consensus 89 g~~~~~GY~~~Dy~~id-p~~Gt~~df~~Lv~~aH~~GIkVilD~V~NHts~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (680)
T 1cyg_A 89 GSASYHGYWARDFKKPN-PFFGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDA 167 (680)
T ss_dssp CCCSTTSCSEEEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCT
T ss_pred CCCCCCCcCchhccccC-cccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccccCcchhhcCccccCcccccccCCCc
Confidence 257999999999999 9999999999999999999999999999999998874211 11111111100 001112
Q ss_pred CCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHH---h
Q 014447 142 GPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYME---N 218 (424)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~---~ 218 (424)
...++..+...|.+....+ .+.+.++||||++||+||++|++++++|++ +||||||||++++++.+||+++.+ +
T Consensus 168 ~~~f~~~~~~~~~~~~~~~--y~~~~~~pDLn~~np~Vr~~i~~~~~~Wl~-~GVDGfRlDa~~~i~~~f~~~~~~~v~~ 244 (680)
T 1cyg_A 168 NMYFHHNGGTTFSSLEDGI--YRNLFDLADLNHQNPVIDRYLKDAVKMWID-MGIDGIRMDAVKHMPFGWQKSLMDEIDN 244 (680)
T ss_dssp TCCBCCSCBCCCSSHHHHH--SSBSTTEEEBCTTSHHHHHHHHHHHHHHHT-TTCCEEEESCGGGSCSHHHHHHHHHHHH
T ss_pred hhceecCCCCCcCCCcccc--ccCcCCCCccccCCHHHHHHHHHHHHHHHh-CCCCEEEEeccccCCHHHHHHHHHHHhh
Confidence 1222211122332211111 123457999999999999999999999999 999999999999999999998844 4
Q ss_pred cCCCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc---hhhhhhhhcCCCCCCc
Q 014447 219 TSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG---ELWRLKDSNGKPPGFI 295 (424)
Q Consensus 219 ~~p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 295 (424)
.+|.+++||++.... ........|... . ..+.++|++...+..++.+ ....+...........
T Consensus 245 ~~~~~~vgE~~~~~~------------~~~~~~~~~~~~-~-~~~~~df~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 310 (680)
T 1cyg_A 245 YRPVFTFGEWFLSEN------------EVDANNHYFANE-S-GMSLLDFRFGQKLRQVLRNNSDNWYGFNQMIQDTASAY 310 (680)
T ss_dssp HCCCEEEECCCCCTT------------CCCHHHHHHHHH-S-SCEEBCHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHC
T ss_pred cCCcEEEccCCCCCc------------ccchhhhhhhcc-C-CCceECchHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 467889999985421 011334455543 2 2457899988888877643 2222222111000000
Q ss_pred CcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCCC---------------c----chHHHHH
Q 014447 296 GILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFD---------------W----GLKEAIS 356 (424)
Q Consensus 296 ~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~~---------------w----~l~~~~~ 356 (424)
..+...++|++|||++|..+. ..+.+++++|++++|++||+|+||||+|++ | +++++||
T Consensus 311 -~~~~~~~~fl~NHD~~R~~s~-~~~~~~~~~a~a~llt~pG~P~IYyG~E~g~~~~~dp~~R~~m~~~~~~~~~~~~~~ 388 (680)
T 1cyg_A 311 -DEVLDQVTFIDNHDMDRFMID-GGDPRKVDMALAVLLTSRGVPNIYYGTEQYMTGNGDPNNRKMMSSFNKNTRAYQVIQ 388 (680)
T ss_dssp -TTGGGCEECSCCTTSCCSCCT-TCCTHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCCSCSHHHHHHH
T ss_pred -cchhhceEEecCCCcchhccc-CCCHHHHHHHHHHHHhCCCCCEEEEeecccccCCCCccccccCcCCCCCcHHHHHHH
Confidence 123456899999999999873 335578999999999999999999999853 2 4889999
Q ss_pred HHHHHHHhcCCCCCCCeEEEecCCCEEEEEE---CCEEEEEECCC
Q 014447 357 KLAAVRNRNGINTASRVNILASDADVYIAAI---GDRVIMKIGPK 398 (424)
Q Consensus 357 ~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r---~~~~lv~ln~~ 398 (424)
+|++||+++|+|+.|.++.+..++++++|.| +++++|++|.+
T Consensus 389 ~Li~lRk~~~al~~G~~~~~~~~~~v~af~R~~~~~~~lV~~N~s 433 (680)
T 1cyg_A 389 KLSSLRRNNPALAYGDTEQRWINGDVYVYERQFGKDVVLVAVNRS 433 (680)
T ss_dssp HHHHHHHHCHHHHHCEEEEEEECSSEEEEEEEETTEEEEEEEECC
T ss_pred HHHHHHhhCHHHccCceEEEEeCCCEEEEEEEcCCcEEEEEEECC
Confidence 9999999999999999988878889999999 56888999976
|
| >3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-61 Score=503.11 Aligned_cols=353 Identities=19% Similarity=0.259 Sum_probs=266.3
Q ss_pred ceEEEeecC---CCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHH
Q 014447 24 ALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAF 100 (424)
Q Consensus 24 ~v~~~~f~~---ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~a 100 (424)
.|+||++.. |+.++++|||+||+++|+|||+|||++|||+||++++.++||++.||++|| |+|||++||++||++|
T Consensus 38 ~viY~i~~~~f~~~~~~~~G~~~g~~~~l~yl~~lGv~~i~l~Pi~~~~~~~gY~~~dy~~i~-~~~Gt~~d~~~lv~~~ 116 (669)
T 3k8k_A 38 DISYQLLLYSFADSDGDGYGDLNGVTQKLDYLNQLGVKALWLSPIHPCMSYHGYDVTDYTKVN-PQLGTESDFDRLVTEA 116 (669)
T ss_dssp CCEEEECTTTSCCSSSSSSCCHHHHHTTHHHHHTTTCSEEEECCCSSBSSTTCCSBSCTTSCC-TTTCCHHHHHHHHHHH
T ss_pred cEEEEEEhHHhcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcccccccc-cccCCHHHHHHHHHHH
Confidence 799999861 445567899999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHcCCEEEEeeecccCCCCCC----------CCCcceeecCC-CC-----------------CCCCCCCCCcccccC---
Q 014447 101 RQKGIKCLADMVINHRTAERK----------DGRGIYCIFEG-GT-----------------SDDRLDWGPSFICRG--- 149 (424)
Q Consensus 101 H~~Gi~VilD~v~NH~~~~~~----------~~~~~~~~~~~-~~-----------------~~~~~~w~~~~~~~~--- 149 (424)
|++||+||+|+|+||++.+|+ .+..+|+.+.+ +. ...+.+|...+....
T Consensus 117 h~~gi~vi~D~V~NH~~~~~~wf~~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~f~g~~~~~ 196 (669)
T 3k8k_A 117 HNRGIKIYLDYVMNHTGTAHPWFTEASSSSESPYRNYYSFSEDPKTDIAAGKIAMITQEGAAGYNAAEWFQVSDETAAVK 196 (669)
T ss_dssp HHTTCEEEEEECCSEEETTSHHHHHHHHCTTSTTGGGBCEESCHHHHHHTTCSTTSCSSGGGGCCGGGEEESCSCCCCEE
T ss_pred HHcCCEEEEEECcccCCCcCHHHHHHhhCCCCCccceeEECCCCcccccccccccccccccccCCCcccccccCCCcccc
Confidence 999999999999999999874 23344555541 10 111112211110000
Q ss_pred ----------------------------------------------------------------------------CC--
Q 014447 150 ----------------------------------------------------------------------------DK-- 151 (424)
Q Consensus 150 ----------------------------------------------------------------------------~~-- 151 (424)
..
T Consensus 197 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (669)
T 3k8k_A 197 GLLKFTLDWSNAPSPILVVSTGTKADEDNPDTGTDNAKYLYYGEDICKKFYDKGNNIYELTVDFESTWGLLIRTSNASFW 276 (669)
T ss_dssp EEEEEEEECTTTTSCEEEEEECSSCCCCCCCCCCTTCCEEEETTTEEEECEEEETTEEEEEEEEEESSCEEEESCCSSSC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00
Q ss_pred --------------------------------ccCCCCCCCCCCCCCCC-CCCCCCC-------CHHHHHHHHHHHHHHH
Q 014447 152 --------------------------------EYSDGQGNDDTGEDFQP-APDIDHL-------NPRVQKELSDWMNWLK 191 (424)
Q Consensus 152 --------------------------------~~~~~~~~~~~~~~~~~-~~dln~~-------np~v~~~l~~~~~~w~ 191 (424)
.|....+.++.+.+... +||||++ ||+| ++|++++++|+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~~~~qPDLN~~~~~~~~~Np~V-~~l~dvl~~Wl 355 (669)
T 3k8k_A 277 PSGTKYGASSSSEKLALNKDFKLTNAGNPANIMFDSQQITYFHSHFCTDWFADLNYGPVDQAGESPAY-QAIADAAKGWI 355 (669)
T ss_dssp CTTCEEBBSSTTCCBCTTSCEECBCSSSCBCBCBTTCCCCEEECTTSCTTEEEBCCCSGGGGGGCHHH-HHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccceeeeccccccCCccCCCCCccCCCCHHH-HHHHHHHHHHH
Confidence 01112344556677778 9999999 9999 99999999999
Q ss_pred HhcCCCeEEecccCCC--------CHHHHHHH---HHh------cCC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHH
Q 014447 192 TEIGFDGWRFDFVKGY--------APSITKVY---MEN------TSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 253 (424)
Q Consensus 192 ~~~gvDGfR~D~a~~~--------~~~~~~~~---~~~------~~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (424)
+ .||||||+|+|+++ +.+||+++ +++ .+| .++|||+|.+ ...+..
T Consensus 356 ~-~GVDGFRlDaa~~i~k~~~~~~~~~f~~e~~~~v~~~~~~~g~~pd~~lvGEv~~~----------------~~~~~~ 418 (669)
T 3k8k_A 356 A-RGVDGLRLDAVKHIYHSETSEENPRFLKMFYEDMNAYYKQKGHTDDFYMIGEVLSE----------------YDKVAP 418 (669)
T ss_dssp T-TTCCEEEETTGGGSSSCSSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEEEECCCSC----------------HHHHGG
T ss_pred H-CCCCEEEEechhhhhhccCCCccHHHHHHHHHHHHHHhhhcccCCCeEEEeccCCC----------------HHHHHH
Confidence 9 59999999999999 68899888 344 456 7899999863 233344
Q ss_pred HHHhcCCceeeecccchHHHHHHhcc-hhh----hhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHH
Q 014447 254 WVQAAGGAVAAFDFTTKGILQAAVQG-ELW----RLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLG 328 (424)
Q Consensus 254 ~~~~~~~~~~~~df~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a 328 (424)
|. .++.++|+|.+...+..++.+ ... .+.......+... .....++|++|||++|..+.++.+.+++++|
T Consensus 419 y~---~~l~~vfnF~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~Fl~NHD~~R~~s~~g~d~~~~kla 493 (669)
T 3k8k_A 419 YY---KGLPALFEFSFWYRLEWGINNSTGCYFAKDILSYQQKYANYR--SDYIEATKLSNHDEDRTSSKLGKSADKCKLA 493 (669)
T ss_dssp GG---GTCSEEECHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTC--TTCEEECCSCCTTSCCHHHHTTTCHHHHHHH
T ss_pred Hh---ccCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc--ccceeeeeccCCCCCccccccCCCHHHHHHH
Confidence 44 368899999988766655432 211 1111110000000 0112478999999999998876567889999
Q ss_pred HHHHHcCCCeeEEecCCCC-----------------Cc-------------------------------chHHHHHHHHH
Q 014447 329 YAYILTHPGTPCIFYDHFF-----------------DW-------------------------------GLKEAISKLAA 360 (424)
Q Consensus 329 ~a~~l~~pG~P~iyyG~~~-----------------~w-------------------------------~l~~~~~~L~~ 360 (424)
++++|++||+|+||||||+ +| +++.+||+|++
T Consensus 494 ~allltlpG~P~IYyGdEiGm~~~~~~~d~~~Rtpm~W~~~~~~w~~~~~n~~~~~~~~nv~~q~~d~~sll~~yr~Li~ 573 (669)
T 3k8k_A 494 AAVLLTSAGHPYIYYGEELGLYGTKDNGDEYVRSPMLWGDSYTTNYTDKTDATVSKNVKTVADQQADTHSLLNIYFSLTR 573 (669)
T ss_dssp HHHHHTSSSCCEEETTTTTTCCCCSTTCGGGGSCCCCCSSTTCCCCCSCCCTTHHHHSCCHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHHHhCCCccEEEecccccccCCCCCCCccccCCccCCCCCCCCCCcccccccccccccHHHhhcCcHHHHHHHHHHHH
Confidence 9999999999999999863 46 27999999999
Q ss_pred HHHhcCCCCCCCeEE---Eec-C----CCEEEEEE---CCEEEEEECCCCC
Q 014447 361 VRNRNGINTASRVNI---LAS-D----ADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 361 lR~~~~al~~G~~~~---~~~-~----~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
||+++|+|+.|.++. +.. + +++++|.| +++++|++|.+..
T Consensus 574 LRk~~paL~~G~~~~~~~~~~~~~~~~~~v~ay~R~~~~e~~lVv~N~s~~ 624 (669)
T 3k8k_A 574 LRNTYPALAEGNMTKHSVYNESQEKDYKPIAAWYMTKDNEKLLVIHNFGGT 624 (669)
T ss_dssp HHHHCHHHHHCEEEECSSSSGGGTTTCTTEEEEEEEETTEEEEEEEECSSS
T ss_pred HHHhChhhcCCceEEeeeeeccCccCcCCEEEEEEEeCCCEEEEEEeCCCC
Confidence 999999999999883 333 3 68999999 5688889998643
|
| >3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-60 Score=493.14 Aligned_cols=364 Identities=15% Similarity=0.180 Sum_probs=270.9
Q ss_pred ccCCCCCCceEEEeecC---CCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccccCCCCCCCCCHH
Q 014447 16 IFLPFTSPALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQA 91 (424)
Q Consensus 16 ~~p~~~~~~v~~~~f~~---ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~e 91 (424)
..|.|+++.|+||+|.. |+.++++|||+||+++|+|||+||||+|||+||++++. +|||++.||++|| |+|||++
T Consensus 10 ~~~~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~Ldyl~~LGv~~i~l~Pi~~~~~~~~GY~~~dy~~id-~~~Gt~~ 88 (589)
T 3aj7_A 10 TEPKWWKEATFYQIYPASFKDSNDDGWGDMKGIASKLEYIKELGADAIWISPFYDSPQDDMGYDIANYEKVW-PTYGTNE 88 (589)
T ss_dssp GSCCHHHHCCEEEECGGGSCCSSSSSSCCHHHHHHTHHHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEEC-TTTCCHH
T ss_pred CCccchhhCeEEEEEhHHhcCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCcCcccccccc-cccCCHH
Confidence 35889999999999961 34456789999999999999999999999999999986 6899999999999 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEeeecccCCCCCCC----------CCcceeecCCCCC-------CCCCCCCCcccccCCCccC
Q 014447 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTS-------DDRLDWGPSFICRGDKEYS 154 (424)
Q Consensus 92 dl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~----------~~~~~~~~~~~~~-------~~~~~w~~~~~~~~~~~~~ 154 (424)
||++||++||++||+||||+|+||++.+|+. +..+|+.+.++.. ..+.+|...+. ...+.+.
T Consensus 89 df~~lv~~~h~~Gi~VilD~V~NH~~~~~~wf~~~~~~~~~~y~d~y~~~~~~~~~~~g~~~~p~~~~~~f~-g~~w~~~ 167 (589)
T 3aj7_A 89 DCFALIEKTHKLGMKFITDLVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFG-GSAWTFD 167 (589)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCSSSTTGGGBCEECCSEECTTSCEECSSCBBCTTS-SBSEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEecccccccchhHHHHHhcCCCCCCCCceeecCCcccccccCCCCCCcccccCC-Cccceec
Confidence 9999999999999999999999999988741 1234555543221 12335543331 2223333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHhcCCCeEEecccCCCC-------------------------
Q 014447 155 DGQGNDDTGEDFQPAPDIDHLNPRVQKELSD-WMNWLKTEIGFDGWRFDFVKGYA------------------------- 208 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~dln~~np~v~~~l~~-~~~~w~~~~gvDGfR~D~a~~~~------------------------- 208 (424)
...+.++.+.+...+||||++||+||++|++ ++++|++ +||||||+|+|+++.
T Consensus 168 ~~~~~~y~~~f~~~~pdLN~~np~Vr~~l~~~~~~~Wl~-~gvDGfRlDa~~~i~~~~~~~d~~~~~~~~~~~~~~~~~~ 246 (589)
T 3aj7_A 168 EKTQEFYLRLFCSTQPDLNWENEDCRKAIYESAVGYWLD-HGVDGFRIDVGSLYSKVVGLPDAPVVDKNSTWQSSDPYTL 246 (589)
T ss_dssp TTTTEEEECSSSTTCCBBCTTCHHHHHHHHHHHTHHHHH-TTCCEEEETTGGGSCCCTTCCCCCCCCTTCSSBCCHHHHS
T ss_pred CCCCeEEECccCCCCCccCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEccccccccccCCCcCCcccccccccccccccc
Confidence 4455677788889999999999999999999 9999998 999999999999884
Q ss_pred -----HHHHHHHHH----hc--CC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhc-CCceeeecccchHHHHH
Q 014447 209 -----PSITKVYME----NT--SP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAA-GGAVAAFDFTTKGILQA 275 (424)
Q Consensus 209 -----~~~~~~~~~----~~--~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~df~~~~~~~~ 275 (424)
.+|++++.+ .+ +| .++|||+|... ...+..|.... .++...|+|... ...
T Consensus 247 n~~~~~~~l~~~~~~~~~~v~~~~~~~~vgE~~~~~---------------~~~~~~y~~~~~~~~~~~f~f~~~--~~~ 309 (589)
T 3aj7_A 247 NGPRIHEFHQEMNQFIRNRVKDGREIMTVGEMQHAS---------------DETKRLYTSASRHELSELFNFSHT--DVG 309 (589)
T ss_dssp SCTTHHHHHHHHHHHHHHHCSSCCCCEEEEEEECCC---------------HHHHHHHHCGGGCSCSEEEECHHH--HTT
T ss_pred ccHHHHHHHHHHHHHHHHHhccCCCeEEEEEeCCCC---------------HHHHHHhhccCCCccceeeehhhh--hhh
Confidence 246666644 33 34 78999999642 34556676543 346667777543 111
Q ss_pred Hhc--------chhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCC-----chhHHHHHHHHHcCCCeeEEe
Q 014447 276 AVQ--------GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP-----SDKVMLGYAYILTHPGTPCIF 342 (424)
Q Consensus 276 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~-----~~~~~~a~a~~l~~pG~P~iy 342 (424)
... .....+..............+...++|++|||++|..+.++.+ .++.++|+++++++||+|+||
T Consensus 310 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~fl~NHD~~R~~~~~~~~~~~~~~~~~k~~~~~llt~pG~P~iy 389 (589)
T 3aj7_A 310 TSPLFRYNLVPFELKDWKIALAELFRYINGTDCWSTIYLENHDQPRSITRFGDDSPKNRVISGKLLSVLLSALTGTLYVY 389 (589)
T ss_dssp EETTEEEEECCCCHHHHHHHHHTTTGGGTTSSCCCEECSCCTTSCCHHHHHSCCSTTTHHHHHHHHHHHHHTSSSEEEEE
T ss_pred cccccccccCCCCHHHHHHHHHHHHHhcccCCCcccccccCCCCcchHHHhCCCchhhHHHHHHHHHHHHHHCCCCcEEE
Confidence 100 1112222221111111100123347899999999987765533 257899999999999999999
Q ss_pred cCCCC------------------------------------------------------------------------Cc-
Q 014447 343 YDHFF------------------------------------------------------------------------DW- 349 (424)
Q Consensus 343 yG~~~------------------------------------------------------------------------~w- 349 (424)
||||+ +|
T Consensus 390 ~G~E~G~~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~rd~~R~pm~W~~~~~~~GFs~~~~~pwl 469 (589)
T 3aj7_A 390 QGQELGQINFKNWPVEKYEDVEIRNNYNAIKEEHGENSEEMKKFLEAIALISRDHARTPMQWSREEPNAGFSGPSAKPWF 469 (589)
T ss_dssp TTGGGTCCCCCSCCGGGCCCHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHCGGGGTSCCCCCSCTTTTTSSCTTCCCSS
T ss_pred cChhcccCCCCCCCHHHhcCHHhhhhhHHHhhcCCcccchhhhhhhhhcccCCCCCccceecCCCCCCCCCCCCCCCCCc
Confidence 99852 12
Q ss_pred --------------------chHHHHHHHHHHHHhcCCCC-C-CCeEEEecCC-CEEEEEE---CCEEEEEECCCC
Q 014447 350 --------------------GLKEAISKLAAVRNRNGINT-A-SRVNILASDA-DVYIAAI---GDRVIMKIGPKM 399 (424)
Q Consensus 350 --------------------~l~~~~~~L~~lR~~~~al~-~-G~~~~~~~~~-~v~~~~r---~~~~lv~ln~~~ 399 (424)
+++.+||+|++||+++|+|. . |.++++..++ ++++|.| +++++|++|.+.
T Consensus 470 ~~~~~~~~~~nv~~q~~d~~Sl~~~yr~Li~lRk~~~~l~~~~G~~~~~~~~~~~v~ay~R~~~~~~~lvv~N~s~ 545 (589)
T 3aj7_A 470 YLNDSFREGINVEDEIKDPNSVLNFWKEALKFRKAHKDITVYGYDFEFIDLDNKKLFSFTKKYNNKTLFAALNFSS 545 (589)
T ss_dssp CCCGGGGGTCSHHHHHHCTTSHHHHHHHHHHHHHHTHHHHTSCEEEEEESTTCSSEEEEEEEETTEEEEEEEECSS
T ss_pred cCCccccccccHHHHhhCCCcHHHHHHHHHHHHhcChhhhccCCceEEEecCCCcEEEEEEEcCCCEEEEEEeCCC
Confidence 18899999999999999998 8 9999987664 8999999 568888888754
|
| >3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-60 Score=504.57 Aligned_cols=358 Identities=22% Similarity=0.311 Sum_probs=264.2
Q ss_pred CCCCceEEEeecCCCCCCC----------------------CCcHHHHHhhhh--HHHHcCCCEEEeCCCCCC-------
Q 014447 20 FTSPALLFQGFNWESSNKA----------------------GGWYNSLKNSIP--DLSNAGITHVWLPPPSQS------- 68 (424)
Q Consensus 20 ~~~~~v~~~~f~~ds~~~~----------------------~G~~~gi~~~L~--ylk~lGv~~I~l~Pi~~~------- 68 (424)
.+++.|+||+|. |++.++ ||||+||+++|| |||+|||++|||+||+++
T Consensus 11 ~~~~~viYqi~~-~~F~d~~~~n~~~~~~~dg~~~~~~~~~gGdl~gi~~kLd~~yLk~LGvtaIwL~Pi~~~~~~~~~~ 89 (683)
T 3bmv_A 11 NYSTDVIYQIVT-DRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLTGMGVTAIWIPQPVENIYAVLPD 89 (683)
T ss_dssp CCTTCCEEECCG-GGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHHHHTSTTGGGTCCEEEECCCEEECCCCEEE
T ss_pred CCccCcEEEEec-ccccCCCCCCCCCCcccCCCccccccccCcCHHHHHHhcCHHHHHHcCCCEEEeCccccCccccccc
Confidence 348899999997 554331 599999999999 999999999999999984
Q ss_pred ------CCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCC---cceeecCCCCC--CC
Q 014447 69 ------VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR---GIYCIFEGGTS--DD 137 (424)
Q Consensus 69 ------~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~---~~~~~~~~~~~--~~ 137 (424)
.++|||++.||++|| |+|||++||++||++||++|||||||+|+||++.+|.... .....+.++.. ..
T Consensus 90 ~g~~g~~~~~GYd~~dy~~id-p~~Gt~~dfk~Lv~~aH~~GikVilD~V~NHts~~~~~~~~~~~~g~~~~~~~~~~~~ 168 (683)
T 3bmv_A 90 STFGGSTSYHGYWARDFKRTN-PYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGY 168 (683)
T ss_dssp TTTEEECSTTSCSEEEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECS
T ss_pred ccccCCCCCCCcCcccccccC-cccCCHHHHHHHHHHHHHCCCEEEEEEcccccccccccCcchhccCccccCCcccccC
Confidence 367999999999999 9999999999999999999999999999999998874211 00011111100 00
Q ss_pred CCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHH
Q 014447 138 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYME 217 (424)
Q Consensus 138 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~ 217 (424)
+.+|...++..+...|.+....+ .+.+.++||||++||+||++|++++++|++ +||||||||++++++.+||+++.+
T Consensus 169 ~~~~~~~f~~~~~~~w~~~~~~~--y~~~~~~pdLn~~np~Vr~~i~~~l~~Wl~-~GVDGfRlDa~~~i~~~f~~~~~~ 245 (683)
T 3bmv_A 169 TNDTNGYFHHYGGTDFSSYEDGI--YRNLFDLADLNQQNSTIDSYLKSAIKVWLD-MGIDGIRLDAVKHMPFGWQKNFMD 245 (683)
T ss_dssp TTCTTCCBCCSCBCCCSSHHHHH--HSBSTTEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEESCGGGSCHHHHHHHHH
T ss_pred CCCcccccccCCCCCcCCccccc--ccCcCCCCCcccCCHHHHHHHHHHHHHHHh-CCCCEEEEeccccCCHHHHHHHHH
Confidence 11122222211122232211111 122347999999999999999999999999 999999999999999999999844
Q ss_pred ---hcCCCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc---hhhhhhhhcCCC
Q 014447 218 ---NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG---ELWRLKDSNGKP 291 (424)
Q Consensus 218 ---~~~p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~---~~~~~~~~~~~~ 291 (424)
+.+|.+++||+|.... ........|... .+ .+++||++...+..++.+ ....+.......
T Consensus 246 ~v~~~~~~~~vgE~~~~~~------------~~~~~~~~~~~~-~~-~~~~df~~~~~l~~~~~~~~~~~~~l~~~l~~~ 311 (683)
T 3bmv_A 246 SILSYRPVFTFGEWFLGTN------------EIDVNNTYFANE-SG-MSLLDFRFSQKVRQVFRDNTDTMYGLDSMIQST 311 (683)
T ss_dssp HHHHHSCCEEEECCCCCTT------------CCCHHHHHHHHH-SS-SEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHH
T ss_pred HHHhcCCceEEccccCCCc------------ccchhhhhhhcc-CC-CceECchHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4467889999986421 001344555543 23 356999998888877643 222222211100
Q ss_pred CCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCCC---------------c----chH
Q 014447 292 PGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFD---------------W----GLK 352 (424)
Q Consensus 292 ~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~~---------------w----~l~ 352 (424)
.... ..+...++|++|||++|.. ...+.++.++|++++|++||+|+||||+|++ | +++
T Consensus 312 ~~~~-~~~~~~~~fl~NHD~~R~~--~~~~~~~~~~a~a~llt~pG~P~IYyG~E~g~~~~~d~~~R~~~~~~~~~~~~~ 388 (683)
T 3bmv_A 312 ASDY-NFINDMVTFIDNHDMDRFY--NGGSTRPVEQALAFTLTSRGVPAIYYGTEQYMTGNGDPYNRAMMTSFNTSTTAY 388 (683)
T ss_dssp HHHC-TTGGGCEECSCCSSSCCSC--CSSCSHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCCTTSHHH
T ss_pred HHhc-cchhhceeeccCCCCcccc--cCCCHHHHHHHHHHHHhCCCCCEEEeeeeecccCCCCccccccCCCccCCcHHH
Confidence 0000 0234568999999999988 3445678999999999999999999999853 2 489
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEE---CCEEEEEECCCC
Q 014447 353 EAISKLAAVRNRNGINTASRVNILASDADVYIAAI---GDRVIMKIGPKM 399 (424)
Q Consensus 353 ~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r---~~~~lv~ln~~~ 399 (424)
++||+|++||+++|+|+.|.+..+..++++++|.| +++++|++|.+.
T Consensus 389 ~~~~~Li~lRk~~~al~~G~~~~~~~~~~v~af~R~~~~~~~lV~~N~~~ 438 (683)
T 3bmv_A 389 NVIKKLAPLRKSNPAIAYGTTQQRWINNDVYIYERKFGNNVALVAINRNL 438 (683)
T ss_dssp HHHHHHTTHHHHCHHHHHCEEEEEEECSSEEEEEEEETTEEEEEEEECCS
T ss_pred HHHHHHHHHHhhCHHhhcCcEEEEeeCCCEEEEEEEcCCeEEEEEEECCC
Confidence 99999999999999999999988877889999999 568889999763
|
| >2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-60 Score=488.11 Aligned_cols=364 Identities=20% Similarity=0.319 Sum_probs=266.3
Q ss_pred CCCCCCceEEEeecC---CCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccccCCCCCCCCCHHHH
Q 014447 18 LPFTSPALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQADL 93 (424)
Q Consensus 18 p~~~~~~v~~~~f~~---ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~edl 93 (424)
|.|+++.|+||+|.. |+.++++|||+||+++|+|||+||||+|||+||++++. +|||+++||++|| |+|||++||
T Consensus 3 ~~w~~~~viYqi~~~~F~d~~~dg~Gd~~gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~~gY~~~dy~~id-~~~Gt~~d~ 81 (555)
T 2ze0_A 3 KTWWKEGVAYQIYPRSFMDANGDGIGDLRGIIEKLDYLVELGVDIVWICPIYRSPNADNGYDISDYYAIM-DEFGTMDDF 81 (555)
T ss_dssp CCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTCSCSEEEEEC-GGGCCHHHH
T ss_pred hhhhhcCcEEEEEchHhcCCCCCCcCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCcCcccccccC-cccCCHHHH
Confidence 889999999999971 34455789999999999999999999999999999986 6999999999999 999999999
Q ss_pred HHHHHHHHHcCCEEEEeeecccCCCCCC----------CCCcceeecCCCCC-CCCCCCCCcccccCCCccCCCCCCCCC
Q 014447 94 KSLIQAFRQKGIKCLADMVINHRTAERK----------DGRGIYCIFEGGTS-DDRLDWGPSFICRGDKEYSDGQGNDDT 162 (424)
Q Consensus 94 ~~Lv~~aH~~Gi~VilD~v~NH~~~~~~----------~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~ 162 (424)
++||++||++||+||||+|+||++.+|+ .+..+|+.+.++.. ..+.+|...+. ...+.|....+.++.
T Consensus 82 ~~lv~~~h~~Gi~vilD~V~NH~~~~~~~f~~~~~~~~~~~~~~y~~~~~~~g~~p~~~~~~f~-~~~w~~~~~~~~~~~ 160 (555)
T 2ze0_A 82 DELLAQAHRRGLKVILDLVINHTSDEHPWFIESRSSRDNPKRDWYIWRDGKDGREPNNWESIFG-GSAWQYDERTGQYYL 160 (555)
T ss_dssp HHHHHHHHHTTCEEEEEEECSBCCTTSHHHHHHHHCSSSTTGGGBCEECCBTTBCSSCEECTTS-SBSEEEETTTTEEEE
T ss_pred HHHHHHHHHCCCEEEEEEecccccchhhHHHHhhcCCCCCccccccccCCCCCCCCCcccccCC-CccceecCCCCceee
Confidence 9999999999999999999999998874 12234555544211 12334443321 122233344556677
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH-----------------------------HHHH
Q 014447 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP-----------------------------SITK 213 (424)
Q Consensus 163 ~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~-----------------------------~~~~ 213 (424)
+.+...+||||++||+||++|++++++|++ +||||||+|+|++++. ++++
T Consensus 161 ~~f~~~~pdLn~~np~V~~~l~~~~~~W~~-~gvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
T 2ze0_A 161 HIFDVKQPDLNWENSEVRQALYEMVNWWLD-KGIDGFRIDAISHIKKKPGLPDLPNPKGLKYVPSFAGHMNQPGIMEYLR 239 (555)
T ss_dssp CSSCTTCCBBCTTCHHHHHHHHHHHHHHHH-HTCCEEEEESGGGSSCCTTCCCCC----CCSEECHHHHSSCTTHHHHHH
T ss_pred cccCccCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEccccccccccccccCCcccccccccccccccCcHHHHHHHH
Confidence 778899999999999999999999999998 9999999999998754 3566
Q ss_pred HHHH---hcCCCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHh-cCCceeeecccchHHHHHH--hcchhhhhhhh
Q 014447 214 VYME---NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGILQAA--VQGELWRLKDS 287 (424)
Q Consensus 214 ~~~~---~~~p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~df~~~~~~~~~--~~~~~~~~~~~ 287 (424)
++.+ ...+.++|||++... ...+..|... ..++++.|+|.....+... .......+...
T Consensus 240 ~~r~~v~~~~~~~~vgE~~~~~---------------~~~~~~y~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~ 304 (555)
T 2ze0_A 240 ELKEQTFARYDIMTVGEANGVT---------------VDEAEQWVGEENGVFNMIFQFEHLGLWERRADGSIDVRRLKRT 304 (555)
T ss_dssp HHHHHTGGGSSCEEEEECTTCC---------------TTTTHHHHCSSSCSCSEEECCTTCCCCCCCC--CCCHHHHHHH
T ss_pred HHHHHhhccCCeEEEeccCCCC---------------HHHHHHHhccccccccceeehHHHhhhhccccCCCCHHHHHHH
Confidence 6633 223588999998531 2344566653 2457778888754210000 00000111100
Q ss_pred cCCCCCCcCcCCCcceecccCCCCCcCcccCCCCc----hhHHHHHHHHHcCCCeeEEecCCCC----------------
Q 014447 288 NGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS----DKVMLGYAYILTHPGTPCIFYDHFF---------------- 347 (424)
Q Consensus 288 ~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~----~~~~~a~a~~l~~pG~P~iyyG~~~---------------- 347 (424)
......... .....++|++|||++|..+..+... ++.++|+++++++||+|+||||+|+
T Consensus 305 ~~~~~~~~~-~~~~~~~fl~NHD~~R~~s~~g~~~~~~~~~~k~~~~~l~t~pG~P~iy~G~E~G~~~~~~~~~~~~~d~ 383 (555)
T 2ze0_A 305 LTKWQKGLE-NRGWNALFLENHDLPRSVSTWGNDRDYWAESAKALGALYFFMQGTPFIYQGQEIGMTNVRFDDIRDYRDV 383 (555)
T ss_dssp HHHHHHHHT-TTCCBEECSCCTTSCCHHHHTSCSSSSHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCCSSGGGCCSH
T ss_pred HHHHHhhcc-CCCceeeeecCCCCcchhhhhCCchhhhHHHHHHHHHHHHhCCCceEEEeceecCcCCCCCCCHHHccCH
Confidence 000000000 0123368999999999877654322 2588999999999999999999853
Q ss_pred -----------------------------------Cc----------------------------------chHHHHHHH
Q 014447 348 -----------------------------------DW----------------------------------GLKEAISKL 358 (424)
Q Consensus 348 -----------------------------------~w----------------------------------~l~~~~~~L 358 (424)
+| +++.+||+|
T Consensus 384 ~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~~R~pm~W~~~~~~gFs~~~pWl~~~~~~~~~nv~~q~~~~~s~~~~y~~L 463 (555)
T 2ze0_A 384 SALRLYELERAKGRTHEEAMTIIWKTGRDNSRTPMQWSGASNAGFTTGTPWIKVNENYRTINVEAERRDPNSVWSFYRQM 463 (555)
T ss_dssp HHHC-----------------CHHHHCGGGGTSCCCCCSSGGGGSCSSCCSSCCCGGGGTSSHHHHHHCTTSHHHHHHHH
T ss_pred HhhcchhhhhhcCCcHHHHHhhhhcccCCCCcCCcccCCCCCCCCcCCCCCccCCCcccccCHHHHhhccccHHHHHHHH
Confidence 22 378899999
Q ss_pred HHHHHhcCCCCCCCeEEEe-cCCCEEEEEE---CCEEEEEECCCCC
Q 014447 359 AAVRNRNGINTASRVNILA-SDADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 359 ~~lR~~~~al~~G~~~~~~-~~~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
++||+++|+|+.|.++.+. .++++++|.| +++++|++|.+..
T Consensus 464 i~lRk~~~al~~G~~~~~~~~~~~v~a~~R~~~~~~~lvv~N~s~~ 509 (555)
T 2ze0_A 464 IQLRKANELFVYGTYDLLLENHPSIYAYTRTLGRDRALVVVNLSDR 509 (555)
T ss_dssp HHHHHHCTHHHHSEEEEESTTCSSEEEEEEEETTEEEEEEEECSSS
T ss_pred HHHHcCCchhhccceEEeecCCCcEEEEEEEcCCceEEEEEECCCC
Confidence 9999999999999999874 4668999999 5688899997643
|
| >2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-61 Score=487.90 Aligned_cols=351 Identities=20% Similarity=0.301 Sum_probs=253.2
Q ss_pred CCCCCCceEEEeecCCCCC----CC------------CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--------CCCC
Q 014447 18 LPFTSPALLFQGFNWESSN----KA------------GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------APQG 73 (424)
Q Consensus 18 p~~~~~~v~~~~f~~ds~~----~~------------~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--------~~~g 73 (424)
|.| ++.+|||+|. +++. ++ ||||+||+++|+|||+||||+|||+||++++ ++||
T Consensus 4 ~~w-~~~~iYqi~~-~~F~~~~~~~~~~~~~~~~~~~gG~~~gi~~~LdyL~~lGvt~I~l~Pi~~~~~~~~~~~~~~~G 81 (478)
T 2guy_A 4 ADW-RSQSIYFLLT-DRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHG 81 (478)
T ss_dssp HHH-TTCCEEEECH-HHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCTTS
T ss_pred hhh-ccCcEEEEec-ccccCCCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhcCCCEEEeCCcccCCccccCCCCCCCC
Confidence 445 6789999995 3332 21 4999999999999999999999999999964 5799
Q ss_pred CCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCcc
Q 014447 74 YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEY 153 (424)
Q Consensus 74 Y~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 153 (424)
|++.||++|| |+|||++||++||++||++||+||||+|+||++.+++....+|..|.. .....|+... + ....|
T Consensus 82 Y~~~d~~~id-p~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~d~~~~~~---~~~~~~~~~~-~-~~~~~ 155 (478)
T 2guy_A 82 YWQQDIYSLN-ENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKP---FSSQDYFHPF-C-FIQNY 155 (478)
T ss_dssp CSEEEEEEEC-TTSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCEEBCGGGCCGGGSBS---CCSGGGBCCS-C-BCCCT
T ss_pred CCcccccccC-ccCCCHHHHHHHHHHHHHCCCEEEEEECcccCCCCCCcccccccccCC---CCchhhcCCC-C-cccCC
Confidence 9999999999 999999999999999999999999999999999887633333332221 0000111000 0 00011
Q ss_pred CCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEeeecCC
Q 014447 154 SDGQG--NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDS 231 (424)
Q Consensus 154 ~~~~~--~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~v~E~~~~ 231 (424)
.+... +...+.+..++||||++||+||++|++++++|++++||||||+|+|++++.+||+++.+. .+.+++||+|..
T Consensus 156 ~~~~~~~~~w~g~~~~~~~dln~~~~~V~~~l~~~~~~w~~~~gvDGfR~Da~~~~~~~f~~~~~~~-~~~~~igE~~~~ 234 (478)
T 2guy_A 156 EDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKA-AGVYCIGEVLDG 234 (478)
T ss_dssp TCHHHHHHSBEECSSEEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCGGGHHHHHHH-HTSEEEECCCCS
T ss_pred CCCcccccccccCCCCCCCeeCcCCHHHHHHHHHHHHHHHHhcCCCEEEEeccccCCHHHHHHHHhc-CCceEEeeecCC
Confidence 11000 000122335689999999999999999999999999999999999999999999999775 348899999964
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhc---chhhhhhhhcCCCCCCcCcCCCcceecccC
Q 014447 232 LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ---GELWRLKDSNGKPPGFIGILPQNAVTFIDN 308 (424)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~f~~n 308 (424)
. ...+..|. ++++.+++|++...+..++. ++...+........... ..+...++|++|
T Consensus 235 ~---------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~f~~n 295 (478)
T 2guy_A 235 D---------------PAYTCPYQ---NVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKSDC-PDSTLLGTFVEN 295 (478)
T ss_dssp C---------------HHHHGGGG---GTSSEEBCHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHS-SCGGGSEECSCC
T ss_pred C---------------chhHHhhh---ccCccccCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhC-cChhhceeeccC
Confidence 1 22233332 34677899998877777664 22333322211000000 113456899999
Q ss_pred CCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCCC-------------c--------chHHHHHHHHHHHHhcCC
Q 014447 309 HDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFD-------------W--------GLKEAISKLAAVRNRNGI 367 (424)
Q Consensus 309 HD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~~-------------w--------~l~~~~~~L~~lR~~~~a 367 (424)
||+.|..+... +.++.++|++++|++||+|+||||+|++ | +++++||+|++||+++++
T Consensus 296 HD~~r~~~~~~-~~~~~~~a~a~~l~~pG~P~iy~G~E~g~~~~~~~~~r~~~W~~~~~~~~~l~~~~~~L~~lR~~~~~ 374 (478)
T 2guy_A 296 HDNPRFASYTN-DIALAKNVAAFIILNDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASANAIRNYAIS 374 (478)
T ss_dssp TTSCCGGGTCC-CHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTTTCCCGGGGTCCTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccccC-CHHHHHHHHHHHHcCCCccEEEeehhhccCCCCCccchhhhcccCCCcchHHHHHHHHHHHHHHhhhh
Confidence 99999987654 5568899999999999999999999754 3 388999999999998743
Q ss_pred C----CCCCeEEEecCCCEEEEEEC---CEEEEEECC
Q 014447 368 N----TASRVNILASDADVYIAAIG---DRVIMKIGP 397 (424)
Q Consensus 368 l----~~G~~~~~~~~~~v~~~~r~---~~~lv~ln~ 397 (424)
. ..+.++++..++++++|.|. ++.+||++|
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~af~R~~~~~~~~vv~~N 411 (478)
T 2guy_A 375 KDTGFVTYKNWPIYKDDTTIAMRKGTDGSQIVTILSN 411 (478)
T ss_dssp HCTTTTTSCCEEEEEETTEEEEEESSTTSCEEEEEEC
T ss_pred cCCcccccceeEEeeCCeEEEEEEEcCCCcEEEEEEC
Confidence 3 22345677778899999993 345544444
|
| >3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-59 Score=485.36 Aligned_cols=347 Identities=28% Similarity=0.536 Sum_probs=256.2
Q ss_pred hhccCCCCCCceEEEeecCC--------CCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC---CCCCCcccccC-
Q 014447 14 LAIFLPFTSPALLFQGFNWE--------SSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---PQGYMPGRLYD- 81 (424)
Q Consensus 14 ~~~~p~~~~~~v~~~~f~~d--------s~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~---~~gY~~~d~~~- 81 (424)
....|.|.++.||||+|+|. +....||||+||+++|+|||+||||+|||+||+++++ +|||++.||++
T Consensus 113 ~~~~p~w~~~~viyq~F~w~~~~~~f~~~~~~~gG~~~gi~~~LdyLk~LGvtaIwL~Pi~~~~s~~~~~GYd~~dy~~l 192 (599)
T 3bc9_A 113 YPQIPDQEVNHTILQAFYWEMNTGEYATEHPEEANLWNLLAERAPELAEAGFTAVWLPPANKGMAGIHDVGYGTYDLWDL 192 (599)
T ss_dssp CCCCCGGGCCCCEEECCCTTTTSHHHHHHCGGGGGHHHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSCSEEETTCS
T ss_pred cCCCchhhcCceEEEEeeccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCChhhcccc
Confidence 34469999999999999987 1123479999999999999999999999999999654 59999999996
Q ss_pred --------CCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCC--CCC-------C---Ccceee-----cCCC-CC
Q 014447 82 --------LDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE--RKD-------G---RGIYCI-----FEGG-TS 135 (424)
Q Consensus 82 --------id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~--~~~-------~---~~~~~~-----~~~~-~~ 135 (424)
|| |+|||++||++||++||++|||||||+|+||++.. |+. + ...+.. |++. ..
T Consensus 193 ~e~~q~g~id-p~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NH~~~~~~~~wf~~~~~~~~~~~~~~~~w~~~~~pg~~~~ 271 (599)
T 3bc9_A 193 GEFDQKGTVR-TKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETVLLDENSRDKPGQYIKAWTGFNFPGRNGE 271 (599)
T ss_dssp SCSCBTTBSS-BTTBCHHHHHHHHHHHHHTTCEEEEEECCSEECSCSEEEEEEBCTTCSSSTTCEEEEEEEBCCTTTTTS
T ss_pred cccccccccC-CCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCCCCcCCccccccccCCCCCcccccccccccCCCCCCC
Confidence 99 99999999999999999999999999999999742 320 0 000111 1110 00
Q ss_pred CCCCCCCCcccccCCCcc--------------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEe
Q 014447 136 DDRLDWGPSFICRGDKEY--------------SDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201 (424)
Q Consensus 136 ~~~~~w~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~ 201 (424)
.....|. .+ +..+..| ..+.......+.+..+||||++||+||++|++++++|++++||||||+
T Consensus 272 Y~~~~~~-w~-~f~g~d~~~~~~~~~~f~~~~~~W~~~~~~~~~~~~~pdLn~~np~Vr~~l~~~l~~Wl~e~GVDGfRl 349 (599)
T 3bc9_A 272 YSNFTWN-GQ-CFDGTDWDDYSKESGKYLFDEKSWDWTYNWDEDYLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRL 349 (599)
T ss_dssp SCCCCBC-GG-GEEEEEEETTTTEEEEEEBTTCCCCCCSSTTCSCCSSEEECTTCHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CccCccc-cc-cCCCCCCccccccccccccCCCCcccccCCccccccCCCcCCCCHHHHHHHHHHHHHHHHcCCCCEEEe
Confidence 1110111 00 0000001 011111112334566799999999999999999999998899999999
Q ss_pred cccCCCCHHHHHHHHHh----cCC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCC-ceeeecccchHHHHH
Q 014447 202 DFVKGYAPSITKVYMEN----TSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGG-AVAAFDFTTKGILQA 275 (424)
Q Consensus 202 D~a~~~~~~~~~~~~~~----~~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~df~~~~~~~~ 275 (424)
|+|++++.+||+++.++ .+| .+++||+|... ...+..|+...++ ..+.|||++...+..
T Consensus 350 Daa~~i~~~f~~~~~~~l~~~~~p~~~~igE~~~~~---------------~~~~~~y~~~~~~~~~~~fdf~~~~~~~~ 414 (599)
T 3bc9_A 350 DAVKHIDYRFIDKWMSAVQNSSNRDVFFVGEAWVED---------------VDDLKGFLDTVGNPDLRVFDFPLRSFFVD 414 (599)
T ss_dssp TTGGGSCHHHHHHHHHHHHHTCSSCCEEEECCCCCS---------------HHHHHHHHHHHCCTTEEEECHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHhhCCCeEEEEcccCCC---------------HHHHHHHhcccCCccceecChHHHHHHHH
Confidence 99999999999999554 345 78999999641 4566778876543 678899998888877
Q ss_pred Hhcch-hhhhhhhcCCCCCCcC--cCCCcceecccCCCCCcCcccCCCCc--hhHHHHHHHHH-cCCCeeEEecCCCCCc
Q 014447 276 AVQGE-LWRLKDSNGKPPGFIG--ILPQNAVTFIDNHDTGSTQRLWPFPS--DKVMLGYAYIL-THPGTPCIFYDHFFDW 349 (424)
Q Consensus 276 ~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~f~~nHD~~r~~~~~~~~~--~~~~~a~a~~l-~~pG~P~iyyG~~~~w 349 (424)
++.+. +.++... .+.. ..|..+++|++|||++|..+... +. ++.++|+|+++ ++||+|+||||+|++.
T Consensus 415 ~~~g~~l~~~~~~-----~~~~~~~~p~~~v~fl~NHD~~R~~s~~~-~~~~~~~~lA~a~ll~t~pG~P~IyyG~E~G~ 488 (599)
T 3bc9_A 415 MLNGAYMADLRNA-----GLVNSPGYENRAVTFVDNHDTDRDEGSYT-VSIYSRKYQAYAYILTRAEGVPTVYWKDYYIW 488 (599)
T ss_dssp HTTCCCGGGGGSC-----SGGGSTTTGGGEEECSCCTTTSCSSSCSS-CCCCSSHHHHHHHHHHCSSSEEEEEHHHHHTS
T ss_pred HhcchhHHHHHHH-----HHhhccCCchhheeEecCCCCCccccccc-cHhHHHHHHHHHHHHHcCCCceEEEechhhCC
Confidence 76543 2222211 1111 12556789999999999877632 22 34788888866 5799999999999988
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCeEEEe-cCCCEEEEEE
Q 014447 350 GLKEAISKLAAVRNRNGINTASRVNILA-SDADVYIAAI 387 (424)
Q Consensus 350 ~l~~~~~~L~~lR~~~~al~~G~~~~~~-~~~~v~~~~r 387 (424)
.+..+||+|++||+++ ..|.+..+. .++++++|.|
T Consensus 489 ~~~~~~~~Li~lRk~~---~~G~~~~~~~~~~~v~af~R 524 (599)
T 3bc9_A 489 EMKEGLDKLLTARRYY---AYGPGYEVDNNDADIYSYVR 524 (599)
T ss_dssp CCHHHHHHHHHHHHHT---CCSCEEECSCCCSSEEEEEE
T ss_pred chHHHHHHHHHHHHHh---ccCCeEEEEeCCCCEEEEEE
Confidence 8899999999999996 478887766 6779999999
|
| >1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-60 Score=502.96 Aligned_cols=358 Identities=23% Similarity=0.342 Sum_probs=263.1
Q ss_pred CCCceEEEeecCCCCCCC----------------------CCcHHHHHhhhh--HHHHcCCCEEEeCCCCCC--------
Q 014447 21 TSPALLFQGFNWESSNKA----------------------GGWYNSLKNSIP--DLSNAGITHVWLPPPSQS-------- 68 (424)
Q Consensus 21 ~~~~v~~~~f~~ds~~~~----------------------~G~~~gi~~~L~--ylk~lGv~~I~l~Pi~~~-------- 68 (424)
+++.|+||+|. |++.++ +|||+||+++|| |||+||||+||||||+++
T Consensus 12 ~~~~viYqi~~-~~F~d~~~~n~~~~~~~dg~~~~~~~~~gGdl~gi~~kLd~~yLk~LGvt~IwL~Pi~~~~~~~~~~~ 90 (686)
T 1d3c_A 12 FSTDVIYQIFT-DRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYS 90 (686)
T ss_dssp CTTCCEEEECG-GGTCCSCGGGCCCGGGBCTTCCSTTSBCCCCHHHHHHHHHTTTTGGGTCCEEEECCCEEECCCCEESS
T ss_pred CccCcEEEEec-ccccCCCCCcCCCCcccCCCccccccccCcCHHHHHHhcCHHHHHhcCCCEEEeCCcccCCccccccc
Confidence 38899999997 544321 499999999999 999999999999999984
Q ss_pred ----CCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCC---CcceeecCCCCC--CCCC
Q 014447 69 ----VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDG---RGIYCIFEGGTS--DDRL 139 (424)
Q Consensus 69 ----~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~---~~~~~~~~~~~~--~~~~ 139 (424)
.++|||++.||++|| |+|||++||++||++||++|||||||+|+||++.+|... ......+.++.. ....
T Consensus 91 g~~~~~~~GYd~~dy~~id-p~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NHts~~~~~~~~~~~~g~~~~~~~~~~~~~~ 169 (686)
T 1d3c_A 91 GVNNTAYHGYWARDFKKTN-PAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTN 169 (686)
T ss_dssp SCEECCTTSCSEEEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTT
T ss_pred CccCCCCCCCCcccccccC-cccCCHHHHHHHHHHHHHCCCEEEEEeCcCccccccccccchhhcCccccCCcccccCCC
Confidence 356999999999999 999999999999999999999999999999999887421 111111211110 0011
Q ss_pred CCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHH--
Q 014447 140 DWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYME-- 217 (424)
Q Consensus 140 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~-- 217 (424)
+|...++..+...|.+....+ .+.+.++||||++||+||++|++++++|++ +||||||+|++++++.+||+++.+
T Consensus 170 ~~~~~f~~~~~~~~~~~~~~~--y~~~~~~pDLn~~np~Vr~~i~~~l~~Wl~-~GVDGfRlDa~~~i~~~f~~~~~~~v 246 (686)
T 1d3c_A 170 DTQNLFHHNGGTDFSTTENGI--YKNLYDLADLNHNNSTVDVYLKDAIKMWLD-LGIDGIRMNAVKHMPFGWQKSFMAAV 246 (686)
T ss_dssp CTTCCBCCSCBCCSSSHHHHH--HSBBTTEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCHHHHHHHHHHH
T ss_pred CccCceecCCCCCcCCCcccc--ccCcCCCCCcccCCHHHHHHHHHHHHHHHh-CCCCEEEEeccccCCHHHHHHHHHHH
Confidence 111122211112232211111 122347999999999999999999999999 999999999999999999999844
Q ss_pred -hcCCCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc---hhhhhhhhcCCCCC
Q 014447 218 -NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG---ELWRLKDSNGKPPG 293 (424)
Q Consensus 218 -~~~p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~---~~~~~~~~~~~~~~ 293 (424)
+.+|.+++||+|.... ........|... .+ .+.+||++...+..++.+ ....+.........
T Consensus 247 ~~~~~~~~vgE~~~~~~------------~~~~~~~~~~~~-~~-~~~~df~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 312 (686)
T 1d3c_A 247 NNYKPVFTFGQWFLGVN------------EVSPENHKFANE-SG-MSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAA 312 (686)
T ss_dssp HTTSCCEEEECCCCCTT------------CCCHHHHHHHHH-SS-SEEBCHHHHHHHHHHHTTCSSCHHHHHHHHHHHHH
T ss_pred HhcCCceEEeccccCCc------------ccchhhhhhhcc-CC-CceeCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 4467889999986421 001334455543 22 357999988888877643 22222221110000
Q ss_pred CcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCCC---------------c----chHHH
Q 014447 294 FIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFD---------------W----GLKEA 354 (424)
Q Consensus 294 ~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~~---------------w----~l~~~ 354 (424)
. ...+...++|++|||++|..+. ..+.+++++|++++|++||+|+||||+|++ | +++++
T Consensus 313 ~-~~~~~~~~~fl~nHD~~R~~~~-~~~~~~~~~a~a~llt~pG~P~IyyG~E~g~~~~~dp~~R~~~~~~~~~~~~~~~ 390 (686)
T 1d3c_A 313 D-YAQVDDQVTFIDNHDMERFHAS-NANRRKLEQALAFTLTSRGVPAIYYGTEQYMSGGTDPDNRARIPSFSTSTTAYQV 390 (686)
T ss_dssp H-CTTGGGCEECSCCTTSCCSSCT-TSCHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCSTTGGGCCCCCCCSCSHHHHH
T ss_pred h-ccccccceeeccCCCccccccc-cCCHHHHHHHHHHHHhCCCCcEEEecceecccCCCCcccccCCCCcCCCcHHHHH
Confidence 0 0023456899999999999873 335578999999999999999999999753 1 38899
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEE---CCEEEEEECCCC
Q 014447 355 ISKLAAVRNRNGINTASRVNILASDADVYIAAI---GDRVIMKIGPKM 399 (424)
Q Consensus 355 ~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r---~~~~lv~ln~~~ 399 (424)
||+|++||+++|+|+.|.++.+..++++++|.| +++++|++|.+.
T Consensus 391 ~~~Li~lRk~~~al~~G~~~~~~~~~~v~af~R~~~~~~~lVv~N~s~ 438 (686)
T 1d3c_A 391 IQKLAPLRKCNPAIAYGSTQERWINNDVLIYERKFGSNVAVVAVNRNL 438 (686)
T ss_dssp HHHHTTHHHHCHHHHHCEEEEEEECSSEEEEEEECSSEEEEEEEECCT
T ss_pred HHHHHHHHhhChHhhCCcEEEEeeCCCEEEEEEEcCCcEEEEEEECCC
Confidence 999999999999999999988878889999999 568899999863
|
| >1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-59 Score=470.74 Aligned_cols=343 Identities=20% Similarity=0.296 Sum_probs=252.4
Q ss_pred CC-CCCCceEEEeecCCCCCCCCCcHHHHHhh-hhHHHHcCCCEEEeCCCCCCCCC------CCCCcccccCCCCCCCCC
Q 014447 18 LP-FTSPALLFQGFNWESSNKAGGWYNSLKNS-IPDLSNAGITHVWLPPPSQSVAP------QGYMPGRLYDLDASKYGS 89 (424)
Q Consensus 18 p~-~~~~~v~~~~f~~ds~~~~~G~~~gi~~~-L~ylk~lGv~~I~l~Pi~~~~~~------~gY~~~d~~~id~~~~Gt 89 (424)
|+ |.+++||+|.|.|+ |+||+++ |+|||+||||+|||+||++++.. |||++.|| +|| |+|||
T Consensus 4 ~~~~~~~~~i~~~F~w~--------~~gi~~~~ldyL~~LGv~~I~l~Pi~~~~~~~~~~~~~gYd~~dy-~id-p~~Gt 73 (471)
T 1jae_A 4 ANFASGRNSIVHLFEWK--------WNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSY-IIN-TRSGD 73 (471)
T ss_dssp CCCCTTCEEEEEETTCC--------HHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCS-CSE-ETTEE
T ss_pred CCCCCCCCeEEEEecCC--------HHHHHHHHHHHHHHcCCCEEEeCccccccCCCCCCcccccccccc-ccc-CCCCC
Confidence 44 45889999999986 9999999 69999999999999999998753 69999996 999 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCCCCC-CCCcceeecCCCC-CCCCCCCCCccccc-CCCccCCCCCCCCCCCCC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERK-DGRGIYCIFEGGT-SDDRLDWGPSFICR-GDKEYSDGQGNDDTGEDF 166 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~-~~~~~~~~~~~~~-~~~~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~ 166 (424)
++||++||++||++|||||+|+|+||++.+|. +..+.++.+.... +..+.+|. .+... ....|.+.. ...++++
T Consensus 74 ~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~f~~~~~i~~~~~~~--~~~~~~~ 150 (471)
T 1jae_A 74 ESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSG-DFHSPCEVNNYQDAD--NVRNCEL 150 (471)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCSSCEEBTTSCEEBTTTTBBTTTTBCGG-GBCCCCBCCCTTCHH--HHHHSBB
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCCCCcCCCCCccCccCCcCCCCCCCHh-HcCCCCCccCCCChh--hcccccc
Confidence 99999999999999999999999999999871 1111222110000 00011111 11100 012232211 2334567
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcC-----------C-CeEEeeecCCCCC
Q 014447 167 QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTS-----------P-DFAVGEKWDSLSY 234 (424)
Q Consensus 167 ~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~-----------p-~~~v~E~~~~~~~ 234 (424)
.++||||++||+||++|++++++|++ +||||||+|+|++++++||+++.++.+ | .+++||+|....
T Consensus 151 ~~~pdLn~~np~V~~~i~~~~~~w~~-~gvDGfRlDa~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~- 228 (471)
T 1jae_A 151 VGLRDLNQGSDYVRGVLIDYMNHMID-LGVAGFRVDAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDLGG- 228 (471)
T ss_dssp TTBCBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCHHHHHHHHHTCCCCCGGGTCCTTCCCEEEEECCCCSS-
T ss_pred CCCCccCcCCHHHHHHHHHHHHHHHH-cCCCEEEeechhcCCHHHHHHHHHHHhhhccccccccCCCceEEEeeecCCC-
Confidence 89999999999999999999999996 999999999999999999999866543 3 689999996421
Q ss_pred CCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc--hhhhhhhhcCCCCCCcCcCCCcceecccCCCCC
Q 014447 235 GPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG--ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTG 312 (424)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~ 312 (424)
+... ...| .++.++++|++...+..++.+ .+..+....... . ...+...++|++|||++
T Consensus 229 ------~~~~------~~~y----~~~~~~~~f~~~~~l~~~~~~~~~~~~l~~~~~~~-~--~~~~~~~~~fl~nHD~~ 289 (471)
T 1jae_A 229 ------EAIS------KNEY----TGFGCVLEFQFGVSLGNAFQGGNQLKNLANWGPEW-G--LLEGLDAVVFVDNHDNQ 289 (471)
T ss_dssp ------SSCC------GGGT----TTSSEEECHHHHHHHHHHHTTTSCGGGGGGCSGGG-T--CCCGGGEEECSCCTTHH
T ss_pred ------cccc------hhhh----cCCCceeccHHHHHHHHHHhCCCcHHHHHHhhhhc-C--CCChhheeEEeecCCCC
Confidence 0000 0011 246778999998888888754 344443321100 1 11245679999999999
Q ss_pred cCc--ccCC-CCchhHHHHHHHHHcCC-CeeEEecCCCCC------------------------c-------chHHHHHH
Q 014447 313 STQ--RLWP-FPSDKVMLGYAYILTHP-GTPCIFYDHFFD------------------------W-------GLKEAISK 357 (424)
Q Consensus 313 r~~--~~~~-~~~~~~~~a~a~~l~~p-G~P~iyyG~~~~------------------------w-------~l~~~~~~ 357 (424)
|.. +... .+.++.++|++++|++| |+|+||||+|++ | +++++||+
T Consensus 290 R~~g~~~~~~~~~~~~~la~a~llt~pyG~P~iy~G~E~g~~~~~~p~~~~~~~~~p~f~~~~~w~~~~~~~~l~~~~~~ 369 (471)
T 1jae_A 290 RTGGSQILTYKNPKPYKMAIAFMLAHPYGTTRIMSSFDFTDNDQGPPQDGSGNLISPGINDDNTCSNGYVCEHRWRQVYG 369 (471)
T ss_dssp HHSCTTCCCTTSHHHHHHHHHHHHHSCSSEEEEEECBCCSSTTCCCCBCTTSCBCCCEECTTSCEETTBCCGGGSHHHHH
T ss_pred CCCCCcccccCCHHHHHHHHHHHHhCcCCceEEEecceecCCCCCCCccCCCCccccccccCCccccCcccchHHHHHHH
Confidence 986 4433 34578999999999999 999999998642 2 37899999
Q ss_pred HHHHHHhcCCCCCCCeE--EEecCCCEEEEEECCEEEEEECCC
Q 014447 358 LAAVRNRNGINTASRVN--ILASDADVYIAAIGDRVIMKIGPK 398 (424)
Q Consensus 358 L~~lR~~~~al~~G~~~--~~~~~~~v~~~~r~~~~lv~ln~~ 398 (424)
|++||+++ .|... +...++++++|.|+++++|++|++
T Consensus 370 Li~lR~~~----~g~~~~~~~~~~~~~~af~R~~~~~vv~N~~ 408 (471)
T 1jae_A 370 MVGFRNAV----EGTQVENWWSNDDNQIAFSRGSQGFVAFTNG 408 (471)
T ss_dssp HHHHHHHT----TTCCEEEEEECSSSEEEEEETTTEEEEEESS
T ss_pred HHHHHHhc----cCCceEEEEeCCCCEEEEecCCCEEEEEeCC
Confidence 99999997 35543 344457899999988899999987
|
| >1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-59 Score=490.37 Aligned_cols=328 Identities=19% Similarity=0.269 Sum_probs=241.0
Q ss_pred CCcHHHHHhhhhHHHH-cCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcC--C--EEEEeeec
Q 014447 39 GGWYNSLKNSIPDLSN-AGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKG--I--KCLADMVI 113 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~-lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~G--i--~VilD~v~ 113 (424)
||||+||+++|+|||+ ||||+||||||++++.+|||++.||++|| |+|||++|||+||++||++| | +||||+|+
T Consensus 187 gG~~~gi~~~LdyLk~~LGvt~I~L~Pi~~~~~~~GYd~~dy~~id-~~~Gt~~dfk~LV~~~H~~G~~I~~~VIlD~V~ 265 (637)
T 1ji1_A 187 GGDLAGIDQKLGYIKKTLGANILYLNPIFKAPTNHKYDTQDYMAVD-PAFGDNSTLQTLINDIHSTANGPKGYLILDGVF 265 (637)
T ss_dssp CCCHHHHHHTHHHHHTTTCCCEEEESCCEECSSSSCCSCSEEEEEC-TTTCCHHHHHHHHHHHHCSSSSSCCEEEEEECC
T ss_pred CcCHHHHHHhHHHHHhccCCCEEEECCCccCCCCCCcCccchhhhc-cccCCHHHHHHHHHHHHhCCCCccceEEEEECc
Confidence 4999999999999999 99999999999999999999999999999 99999999999999999999 9 99999999
Q ss_pred ccCCCCCCCCCcceeecCC-C----CCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCH--HHHHHH---
Q 014447 114 NHRTAERKDGRGIYCIFEG-G----TSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP--RVQKEL--- 183 (424)
Q Consensus 114 NH~~~~~~~~~~~~~~~~~-~----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np--~v~~~l--- 183 (424)
||++.+|+..... ..|.. + ....+.+|+.. .+..+.+..++....+|+||++|| +||++|
T Consensus 266 NH~~~~~~~f~~~-~~f~~~g~y~~~~~py~~~y~~---------~~~~~~~~~~~g~~~~pdln~~~p~~~Vr~~i~~~ 335 (637)
T 1ji1_A 266 NHTGDSHPWFDKY-NNFSSQGAYESQSSPWYNYYTF---------YTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNN 335 (637)
T ss_dssp SBCCTTSTTTCTT-CCSSSCCTTTCTTCTTGGGBCE---------EETTTEECEETTEEEEEBBBCCSTTCHHHHHHTTS
T ss_pred ccCCCCcHHHhhh-hccCccccccCCCCcccccccc---------CCCCCCcccccCCCCcccccccCChHHHHHHHHhh
Confidence 9999987621100 00000 0 00001112111 111112222223456899999999 999999
Q ss_pred -HHHHHHHHHh-cCCCeEEecccCCC---C--------HHHHHHHH---HhcCC-CeEEeeecCCCCCCCCCCCCCCCCC
Q 014447 184 -SDWMNWLKTE-IGFDGWRFDFVKGY---A--------PSITKVYM---ENTSP-DFAVGEKWDSLSYGPDGKPDANQDG 246 (424)
Q Consensus 184 -~~~~~~w~~~-~gvDGfR~D~a~~~---~--------~~~~~~~~---~~~~p-~~~v~E~~~~~~~~~~~~~~~~~~~ 246 (424)
++++++|+++ +||||||+|+|+++ + .+||+++. ++..| +++|||.|....
T Consensus 336 ~~~~~~~Wl~~~~gvDGfR~Da~~~l~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~ligE~~~~~~------------- 402 (637)
T 1ji1_A 336 SNSVAKTYLNPPYSVDGWRLDAAQYVDANGNNGSDVTNHQIWSEFRNAVKGVNSNAAIIGEYWGNAN------------- 402 (637)
T ss_dssp TTSHHHHHHSTTTCCCEEEETTGGGCBSTTCCCSSHHHHHHHHHHHHHHHHHCTTCEEEECCSSCCG-------------
T ss_pred hHHHHHHHHhCcCCCCEEEEEchhhhhccCccccccchHHHHHHHHHHHHhhCCCeEEEEEecCCch-------------
Confidence 9999999998 99999999999999 6 78999884 44566 889999996432
Q ss_pred chhHHHHHHHhcCCceeeecc-cchHHHHHHhcc----------hhhh----hhhhcCCCCCCcCcCCCcceecccCCCC
Q 014447 247 HRGALKDWVQAAGGAVAAFDF-TTKGILQAAVQG----------ELWR----LKDSNGKPPGFIGILPQNAVTFIDNHDT 311 (424)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~df-~~~~~~~~~~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~f~~nHD~ 311 (424)
.|+....+++..++| .++..+...+.+ .... +.......+.. .+...++|++|||+
T Consensus 403 ------~~~~~g~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~~~~f~~nHD~ 473 (637)
T 1ji1_A 403 ------PWTAQGNQWDAATNFDGFTQPVSEWITGKDYQNNSASISTTQFDSWLRGTRANYPTN---VQQSMMNFLSNHDI 473 (637)
T ss_dssp ------GGTTTSSSCSEEBCTTTTHHHHHHHHTSBCTTSCBCCCCHHHHHHHHHHHHTTSCHH---HHTTCEEESCCTTS
T ss_pred ------hhhccCCccceEEecHHHHHHHHHHhcCCccccccCCCCHHHHHHHHHHHHHhcccc---chhhceecccCCch
Confidence 111111234444554 233344433322 1111 11111111100 11235899999999
Q ss_pred CcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC--------------Cc-------chHHHHHHHHHHHHhcCCCCC
Q 014447 312 GSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF--------------DW-------GLKEAISKLAAVRNRNGINTA 370 (424)
Q Consensus 312 ~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~--------------~w-------~l~~~~~~L~~lR~~~~al~~ 370 (424)
.|+.+.+..+.+++++|++++|++||+|+||||+|+ +| ++++++|+|++||+++|+|+.
T Consensus 474 ~rl~~~~~g~~~~~~~a~a~ll~~pG~P~iy~GdE~G~~~~~d~~~r~~~~W~~~~~~~~l~~~~~~Li~lRk~~~al~~ 553 (637)
T 1ji1_A 474 TRFATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQGGADPDNRRSFDWSQATPSNSAVALTQKLITIRNQYPALRT 553 (637)
T ss_dssp CCHHHHTTTCHHHHHHHHHHHTTSSSEEEEETTGGGTCCCCSTTGGGCCCCTTSSSTTSHHHHHHHHHHHHHHHCHHHHH
T ss_pred hhHhhhcCCcHHHHHHHHHHHHhCCCCceEEeeeccccCCCCCCcccCCCCCCcCCChHHHHHHHHHHHHHHhhChHhhc
Confidence 999887764567899999999999999999999974 46 389999999999999999999
Q ss_pred CCeEEEecCC--CEEEEEE---CCEEEEEECCCC
Q 014447 371 SRVNILASDA--DVYIAAI---GDRVIMKIGPKM 399 (424)
Q Consensus 371 G~~~~~~~~~--~v~~~~r---~~~~lv~ln~~~ 399 (424)
|.+.++..++ .+++|.| +++++|++|.+.
T Consensus 554 g~~~~~~~~~~~~v~a~~R~~~~~~~lvv~N~~~ 587 (637)
T 1ji1_A 554 GSFMTLITDDTNKIYSYGRFDNVNRIAVVLNNDS 587 (637)
T ss_dssp SEEEEEEEETTTTEEEEEEECSSCEEEEEEECSS
T ss_pred CceEEEEeCCCeEEEEEEEEcCCCEEEEEEECCC
Confidence 9998877655 4599998 468999999754
|
| >1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-57 Score=459.48 Aligned_cols=341 Identities=20% Similarity=0.286 Sum_probs=245.0
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhh-hhHHHHcCCCEEEeCCCCCCCCC----CCCCcccccCCCCCCCCCHHHHHHH
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNS-IPDLSNAGITHVWLPPPSQSVAP----QGYMPGRLYDLDASKYGSQADLKSL 96 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~-L~ylk~lGv~~I~l~Pi~~~~~~----~gY~~~d~~~id~~~~Gt~edl~~L 96 (424)
+++||+|.|.|+ |+||+++ |||||+||||+||||||++++.. |||++.|| +|| |+|||++|||+|
T Consensus 1 ~~~~~~q~F~w~--------~~gi~~~lldyL~~LGv~~I~l~Pi~~~~~~~~~~~gY~~~~y-~id-p~~Gt~~dfk~L 70 (448)
T 1g94_A 1 TPTTFVHLFEWN--------WQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSY-ELQ-SRGGNRAQFIDM 70 (448)
T ss_dssp CCCCEEEETTCC--------HHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCS-CSC-BTTBCHHHHHHH
T ss_pred CCCEEEEEecCc--------HHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCccccccccc-ccC-CCCCCHHHHHHH
Confidence 357999999976 9999998 59999999999999999998753 69999974 899 999999999999
Q ss_pred HHHHHHcCCEEEEeeecccCCCCCCCCC--cceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCC
Q 014447 97 IQAFRQKGIKCLADMVINHRTAERKDGR--GIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDH 174 (424)
Q Consensus 97 v~~aH~~Gi~VilD~v~NH~~~~~~~~~--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~ 174 (424)
|++||++||+||||+|+||++.+|+... ..|..+.- .+..+..|.... ...+..|.+... ....+.+.++||||+
T Consensus 71 v~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~-~~~g~~~~~~~~-~~~~~~~~~~~dln~ 147 (448)
T 1g94_A 71 VNRCSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSF-PIYSPQDFHESC-TINNSDYGNDRY-RVQNCELVGLADLDT 147 (448)
T ss_dssp HHHHHHTTCEEEEEEECSEECSSCEEBTTSCEEBTTBC-SSCCGGGBCCCC-BCCTTHHHHCHH-HHHHSBSTTCEEBCT
T ss_pred HHHHHHCCCEEEEEEeeccccCCCCCCCCCCCCccccC-CCCCHHHcCCCC-CcCccccCCccc-ccceeeccCCCCcCC
Confidence 9999999999999999999999873110 11211000 001111111100 000002211100 011123478999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHH
Q 014447 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 253 (424)
Q Consensus 175 ~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (424)
+||+||++|++++++|++ +||||||+|+|++++.+||+++.++.++ .+++||+|.... +. .....
T Consensus 148 ~np~Vr~~i~~~~~~w~~-~gvDGfR~D~~~~i~~~~~~~~~~~~~~~~~~vgE~~~~~~-------~~------~~~~~ 213 (448)
T 1g94_A 148 ASNYVQNTIAAYINDLQA-IGVKGFRFDASKHVAASDIQSLMAKVNGSPVVFQEVIDQGG-------EA------VGASE 213 (448)
T ss_dssp TSHHHHHHHHHHHHHHHH-HTCCEEEEETGGGSCHHHHHHHHHTSCSCCEEEECCCCSSC-------CS------SCGGG
T ss_pred CCHHHHHHHHHHHHHHHh-cCCCEEeecccccCCHHHHHHHHHHhccCCeEEEEeecCCC-------Cc------ccHHh
Confidence 999999999999999996 9999999999999999999999998875 889999996421 00 01123
Q ss_pred HHHhcCCceeeecccchHHHHHHhc-chhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcC--c--ccCC-CCchhHHH
Q 014447 254 WVQAAGGAVAAFDFTTKGILQAAVQ-GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGST--Q--RLWP-FPSDKVML 327 (424)
Q Consensus 254 ~~~~~~~~~~~~df~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~--~--~~~~-~~~~~~~~ 327 (424)
|.. ..++++|++...+..++. +++..+...... .....+...++|++|||+.|. . .... .+.++.++
T Consensus 214 y~~----~~~~~~f~~~~~l~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~f~~nHD~~r~~~~~g~~l~~~~~~~~~l 286 (448)
T 1g94_A 214 YLS----TGLVTEFKYSTELGNTFRNGSLAWLSNFGEG---WGFMPSSSAVVFVDNHDNQRGHGGAGNVITFEDGRLYDL 286 (448)
T ss_dssp GGG----GSEEECHHHHHHHHHHHHHSCGGGGGGTTGG---GTCCCGGGEEECSCCTTGGGTSSCCTTSCCGGGTHHHHH
T ss_pred hcC----CCceeeccchhhHHHHhcCCCHHHHHHhhhh---cCCCChhHceEEecCCCCCCCCCCcccccccCCHHHHHH
Confidence 332 345677877777777664 344444442111 011235677999999999998 3 2221 24568999
Q ss_pred HHHHHHcCC-CeeEEecCCCCC------------------------c---chHHHHHHHHHHHHhcCCCCCC-CeEEE-e
Q 014447 328 GYAYILTHP-GTPCIFYDHFFD------------------------W---GLKEAISKLAAVRNRNGINTAS-RVNIL-A 377 (424)
Q Consensus 328 a~a~~l~~p-G~P~iyyG~~~~------------------------w---~l~~~~~~L~~lR~~~~al~~G-~~~~~-~ 377 (424)
|++++|++| |+|+||||+|++ | +++++||+|++||+++. .+ .+... .
T Consensus 287 a~a~~l~~~~G~P~iy~G~E~G~~~~~~~p~~r~~~~~~~~~~~~~w~~~~l~~~~~~Li~lR~~~~---g~~~~~~~~~ 363 (448)
T 1g94_A 287 ANVFMLAYPYGYPKVMSSYDFHGDTDAGGPNVPVHNNGNLECFASNWKCEHRWSYIAGGVDFRNNTA---DNWAVTNWWD 363 (448)
T ss_dssp HHHHHHHSCSSEEEEEECBCCTTCTTCCCCSSCSEETTEECBSSSSBCCGGGSHHHHHHHHHHHHST---TCCCCEEEEE
T ss_pred HHHHHHhCCCCeeEEEechhccccCCCCCCccccccccCCcccCCCcccccHHHHHHHHHHHHHhcc---CCCceEEEEe
Confidence 999999999 999999999761 2 36799999999999972 22 23433 3
Q ss_pred cCCCEEEEEECCEEEEEECCCC
Q 014447 378 SDADVYIAAIGDRVIMKIGPKM 399 (424)
Q Consensus 378 ~~~~v~~~~r~~~~lv~ln~~~ 399 (424)
.++++++|.|.++++|++|++.
T Consensus 364 ~~~~~~af~R~~~~~v~~N~~~ 385 (448)
T 1g94_A 364 NTNNQISFGRGSSGHMAINKED 385 (448)
T ss_dssp CSSSEEEEECGGGEEEEEECSS
T ss_pred CCCCEEEEEcCCcEEEEEECCC
Confidence 4478999999778999999864
|
| >3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-58 Score=483.33 Aligned_cols=359 Identities=18% Similarity=0.208 Sum_probs=264.0
Q ss_pred cCCCCCC--ceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC---CCCCCCcccccCCCCCCCCCHH
Q 014447 17 FLPFTSP--ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV---APQGYMPGRLYDLDASKYGSQA 91 (424)
Q Consensus 17 ~p~~~~~--~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~---~~~gY~~~d~~~id~~~~Gt~e 91 (424)
.|.|++. .|+||++. +++. |||+||+++|+|||+||||+|||+||++++ ++|||++.||++|| |+|||++
T Consensus 82 ~~~W~~~~~~viY~i~~-~~F~---Gdl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~~~~GY~~~dy~~vd-p~~Gt~~ 156 (644)
T 3czg_A 82 HAGWFGQPHMLGYSAYA-DRFA---GTLQGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVE-PSLGSND 156 (644)
T ss_dssp CTTGGGSTTCCEEEECH-HHHH---SSHHHHHHTHHHHHHHTCCEEEECCCBCBCSSCCTTTTSBSCTTSBC-GGGCCHH
T ss_pred CCccccCCCcEEEEEec-hhhC---CCHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCCcCcccccccC-cccCCHH
Confidence 4789877 79999997 7664 899999999999999999999999999987 47999999999999 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEeeecccCCCCCCC---------CCcceeecCCCCCCCCCCC----CCcccc--cCCCccCCC
Q 014447 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKD---------GRGIYCIFEGGTSDDRLDW----GPSFIC--RGDKEYSDG 156 (424)
Q Consensus 92 dl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~---------~~~~~~~~~~~~~~~~~~w----~~~~~~--~~~~~~~~~ 156 (424)
||++||++||++||+||+|+|+||+|.+|+. +..+|+.+.+... .+.+| ...+.. ...+.|.+.
T Consensus 157 df~~Lv~~aH~~GI~VilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~-~p~~~~~~~~~~f~~~~~~~~~~~~~ 235 (644)
T 3czg_A 157 DLVALTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRT-VPDRYEATLGQVFPHTAPGNFTWVDD 235 (644)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCHHHHTTBCEESSSH-HHHHHHHHCCCC------CCEEEETT
T ss_pred HHHHHHHHHHHCCCEEEEEEecCCcccchhhHHHHhcCCCcccCceecCCCCC-CCcchhhcccccCCCCCCCCccccCC
Confidence 9999999999999999999999999998851 1112332221000 00011 000000 011223334
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC-------------HHHHHHH---HHhcC
Q 014447 157 QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------PSITKVY---MENTS 220 (424)
Q Consensus 157 ~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~-------------~~~~~~~---~~~~~ 220 (424)
.++++++.+...+||||++||+|+++|++++++|++ +||||||+|+++++. .+||+++ +++.+
T Consensus 236 ~~~~~~~~f~~~~pdLN~~np~V~~~i~~~~~~wl~-~GvDGfRlDa~~~i~~~~~~~~~n~p~~~~~l~~~r~~~~~~~ 314 (644)
T 3czg_A 236 TAQWMWTTFYPYQWDLNWSNPAVFGDMALAMLRLAN-LGVEAFRLDSTAYLWKRIGTDCMNQSEAHTLLVALRAVTDIVA 314 (644)
T ss_dssp TTEEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHHH-TTEEEEEEETGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHHHC
T ss_pred CCceEecccccCCCcCCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecccccccccCCcccCcHHHHHHHHHHHHHHHHhC
Confidence 456667778899999999999999999999999996 999999999999884 3577777 44556
Q ss_pred C-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhc----CCceeeecccchHHHHHHh-cchhhhhhhhcCCCCCC
Q 014447 221 P-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAA----GGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGF 294 (424)
Q Consensus 221 p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~df~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 294 (424)
| +++|||+|.+ ...+..|+... .++.+.|+|++...+..++ .++...+..........
T Consensus 315 p~~~ligE~~~~----------------~~~~~~y~~~~~~~~~~~~~~ynf~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 378 (644)
T 3czg_A 315 PAVVMKAEAIVP----------------MTQLPPYFGSGVDEGHECHLAYHSTLMAAGWSALALQRGDILHNVIAHSPPL 378 (644)
T ss_dssp TTCEEEEECCSC----------------GGGSGGGGCCGGGTTSSCSEEECHHHHHHHHHHHHHTCTHHHHHHHHTCCCC
T ss_pred CCeEEEEEecCC----------------HHHHHHhhCCCcccccccceeechHHHHHHHHHhccCCHHHHHHHHHhhhcc
Confidence 7 8899999953 22233444322 3577889998776655544 44433333332211111
Q ss_pred cCcCCCcceecccCCCCC--------------------cCcccC---------------C--------------------
Q 014447 295 IGILPQNAVTFIDNHDTG--------------------STQRLW---------------P-------------------- 319 (424)
Q Consensus 295 ~~~~~~~~~~f~~nHD~~--------------------r~~~~~---------------~-------------------- 319 (424)
. .+...++|++|||+- |..... .
T Consensus 379 ~--~~~~~~nfl~nHD~~~~~~~~~~~~~~g~~~~~~~r~~~~~~~g~~~~s~~~G~~y~~N~t~d~Ri~g~las~~g~~ 456 (644)
T 3czg_A 379 P--RHCAWLSYVRCHDDIGWNVLQHEACGNAAQPPFSLRDVARFYANAVPGSYARGESFQSSGDGVHGTNGMAAALAGIQ 456 (644)
T ss_dssp C--TTCEEEEESCCSSCBCGGGGHHHHTCCSSSCCCCHHHHHHHHTTCSTTCCCCCEEC-----CCCCEECCHHHHHTHH
T ss_pred C--CCCeeeEEeccCcccccccchhhhhhccccchhhHHHHHHhhcCCCCcccccCcccccCCccccccccccccccchh
Confidence 1 134568999999962 211000 0
Q ss_pred -----CC-------chhHHHHHHHHHcCCCeeEEecCCCC--------------------------Ccc-----------
Q 014447 320 -----FP-------SDKVMLGYAYILTHPGTPCIFYDHFF--------------------------DWG----------- 350 (424)
Q Consensus 320 -----~~-------~~~~~~a~a~~l~~pG~P~iyyG~~~--------------------------~w~----------- 350 (424)
.+ .+++++|++++|++||+|+||||+|+ +|+
T Consensus 457 ~a~~~~d~~~~~~~~~r~~la~a~llt~pG~P~IY~GdE~G~~~~~~~~~dp~~~~~~R~~~R~~m~W~~~~~~~~~~~~ 536 (644)
T 3czg_A 457 AAQEAGDAAALAVAVDRLVLLYAIALAMPGVPLIYMGDELAMVNDPGYRDDPHRQHEGRWLHRPAMDWQLAAQRHDAKSL 536 (644)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTSSEEEEEETTGGGTCCCCGGGGGSGGGTTCGGGGGCCCCCHHHHHGGGCTTSH
T ss_pred hhhccccchhhhhHHHHHHHHHHHHHHcCCcceEEcchhhcCCCCcccccChhhcccccccCCCCCCcchhhhccCCccc
Confidence 00 24678999999999999999999863 342
Q ss_pred ---hHHHHHHHHHHHHhcCCCCCC-CeEEEecC-CCEEEEEECCEEEEEECCCCC
Q 014447 351 ---LKEAISKLAAVRNRNGINTAS-RVNILASD-ADVYIAAIGDRVIMKIGPKMD 400 (424)
Q Consensus 351 ---l~~~~~~L~~lR~~~~al~~G-~~~~~~~~-~~v~~~~r~~~~lv~ln~~~~ 400 (424)
++++||+|++||+++|+|+.| .++++..+ +++++|.|+++++|++|.+..
T Consensus 537 ~~~l~~~~~~Li~lRk~~pal~~g~~~~~l~~~~~~vlaf~R~~~~lvv~N~s~~ 591 (644)
T 3czg_A 537 SGTVYRRLRGLIRQRAALGALAADQALASIALNDPRVFALTRGDSFIALHNFSDQ 591 (644)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGSTTSCEEEECCSCTTEEEEEETTTEEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHHhCccccCCCeeEEEecCCCCEEEEEECCeEEEEEECCCC
Confidence 679999999999999999988 88888764 689999998889999998643
|
| >1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-57 Score=473.93 Aligned_cols=357 Identities=17% Similarity=0.176 Sum_probs=261.9
Q ss_pred cCCCCCC--ceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC---CCCCCCcccccCCCCCCCCCHH
Q 014447 17 FLPFTSP--ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV---APQGYMPGRLYDLDASKYGSQA 91 (424)
Q Consensus 17 ~p~~~~~--~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~---~~~gY~~~d~~~id~~~~Gt~e 91 (424)
.|.|++. .|+||++. ++++ |||+||+++|+|||+||||+|||+||++++ ++|||++.||++|| |+|||++
T Consensus 89 ~~~W~~~~~~viY~~~~-~~f~---Gdl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~~~~GY~v~dy~~vd-p~~Gt~~ 163 (628)
T 1g5a_A 89 NPDWILSNKQVGGVCYV-DLFA---GDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVN-PALGTIG 163 (628)
T ss_dssp CGGGGGCTTCCEEEECH-HHHH---SSHHHHHTTHHHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBC-TTTCCHH
T ss_pred CcccccCCCcEEEEEch-hhhC---CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCcCCcccCCcC-ccCCCHH
Confidence 4788866 69999997 6663 999999999999999999999999999987 46999999999999 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEeeecccCCCCCCC---------CCcceeecCCCCCCCCCCCC----Ccccc--cCCCccCCC
Q 014447 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKD---------GRGIYCIFEGGTSDDRLDWG----PSFIC--RGDKEYSDG 156 (424)
Q Consensus 92 dl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~---------~~~~~~~~~~~~~~~~~~w~----~~~~~--~~~~~~~~~ 156 (424)
||++||++||++||+||+|+|+||||.+|+. +..+|+.+.+... .+.+|. ..+.. .....|...
T Consensus 164 d~~~Lv~~ah~~GI~VilD~V~NH~s~~~~wf~~~~~g~~~y~d~y~~~~~~~-~P~~~~~~~~~~f~~~~~~~~~~~~~ 242 (628)
T 1g5a_A 164 DLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRR-MPDQYDRTLREIFPDQHPGGFSQLED 242 (628)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCGGGTTSBCEESSSH-HHHHHTTTCCCSSTTTCSTTEEECTT
T ss_pred HHHHHHHHHHHCCCEEEEEEecCcccccchhHHHHhcCCCccccccccCCCCC-CcccccccccccCCCCCCCccccCCC
Confidence 9999999999999999999999999998851 1123332221000 000010 00000 011112222
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC-------------HHHHHHH---HHhcC
Q 014447 157 QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------PSITKVY---MENTS 220 (424)
Q Consensus 157 ~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~-------------~~~~~~~---~~~~~ 220 (424)
+.+.++.+...+||||++||+|+++|++++++|++ +||||||+|+++++. .+||+++ +++.+
T Consensus 243 -~~~~~~~f~~~~pdLN~~np~V~~~i~~~l~~w~~-~GvDGfRlDa~~~i~k~~g~~~~~~p~~~~~~~~~r~~~~~~~ 320 (628)
T 1g5a_A 243 -GRWVWTTFNSFQWDLNYSNPWVFRAMAGEMLFLAN-LGVDILRMDAVAFIWKQMGTSCENLPQAHALIRAFNAVMRIAA 320 (628)
T ss_dssp -SCEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHHT-TTCSEEEETTGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHHHC
T ss_pred -CCEEeccCCCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecccccccccCccccCcHHHHHHHHHHHHHHHHhC
Confidence 45556667889999999999999999999999996 999999999999884 3577777 45556
Q ss_pred C-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh-cchhhhhhhhcCCCCCCcCcC
Q 014447 221 P-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGIL 298 (424)
Q Consensus 221 p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 298 (424)
| +++|||+|.+ ...+..|+.. +++.+.|+|++...+..++ .++...+........... .
T Consensus 321 p~~~~igE~~~~----------------~~~~~~y~~~-~~~~~~y~f~l~~~~~~~~~~~~~~~l~~~l~~~~~~~--~ 381 (628)
T 1g5a_A 321 PAVFFKSEAIVH----------------PDQVVQYIGQ-DECQIGYNPLQMALLWNTLATREVNLLHQALTYRHNLP--E 381 (628)
T ss_dssp TTCEEEECCCSC----------------HHHHGGGBST-TSBSEEECHHHHHHHHHHHHHCCCHHHHHHHHHSCCCC--T
T ss_pred CCeEEEEEecCC----------------HHHHHHhhCC-CCcceeecHHHHHHHHHhhccCCHHHHHHHHHHhhccc--C
Confidence 7 8899999953 3445566653 3578889998876665544 344333333221111111 1
Q ss_pred CCcceecccCCCCC--------------------cCccc---------------C--C----------------------
Q 014447 299 PQNAVTFIDNHDTG--------------------STQRL---------------W--P---------------------- 319 (424)
Q Consensus 299 ~~~~~~f~~nHD~~--------------------r~~~~---------------~--~---------------------- 319 (424)
....++|++|||+- |.... . +
T Consensus 382 ~~~~~nfl~nHD~i~~~~~~~~~~~~g~~~~~~~r~l~~~~~g~~~~s~~~g~~~~~n~d~~d~Ri~~~~as~~g~~~~~ 461 (628)
T 1g5a_A 382 HTAWVNYVRSHDDIGWTFADEDAAYLGISGYDHRQFLNRFFVNRFDGSFARGVPFQYNPSTGDCRVSGTAAALVGLAQDD 461 (628)
T ss_dssp TCEEEEESCCSSCBCCCCCHHHHHHTTCCHHHHHHHHHHHHTTCSTTCCCCCEEECCCTTTCCCEEECCHHHHHTGGGTC
T ss_pred CCeeEeehhccccccccccchhhhhccccchhHHHHHHHHhcCccccccccccccccCccchhhhhccccccccccccch
Confidence 23458899999962 11000 0 0
Q ss_pred -CCchhHHHHHHHHHcCCCeeEEecCCCC--------------------------Ccc--------------hHHHHHHH
Q 014447 320 -FPSDKVMLGYAYILTHPGTPCIFYDHFF--------------------------DWG--------------LKEAISKL 358 (424)
Q Consensus 320 -~~~~~~~~a~a~~l~~pG~P~iyyG~~~--------------------------~w~--------------l~~~~~~L 358 (424)
...++.++|++++|++||+|+||||+|+ +|+ ++++||+|
T Consensus 462 ~~~~~~~~la~a~llt~pG~P~IY~G~EiG~~~~~~~~~dp~~~~~~R~~~R~~~~W~~~~~~~~~~~~~~~l~~~~~~L 541 (628)
T 1g5a_A 462 PHAVDRIKLLYSIALSTGGLPLIYLGDEVGTLNDDDWSQDSNKSDDSRWAHRPRYNEALYAQRNDPSTAAGQIYQDLRHM 541 (628)
T ss_dssp TTHHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSSGGGCTTTTTCGGGGGCCCCCHHHHTTTTCTTSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCcEEEecccccCCCCcccccCchhcccCcccCCCCCCcchhhhccCCCCcHHHHHHHHHHH
Confidence 0024678999999999999999999853 342 77999999
Q ss_pred HHHHHhcCCCCCCCeEEEecC-CCEEEEEECCEEEEEECCCCC
Q 014447 359 AAVRNRNGINTASRVNILASD-ADVYIAAIGDRVIMKIGPKMD 400 (424)
Q Consensus 359 ~~lR~~~~al~~G~~~~~~~~-~~v~~~~r~~~~lv~ln~~~~ 400 (424)
++||+++|+|+.|.++++..+ +.+++|.|..+++|++|.+..
T Consensus 542 i~lRk~~pal~~g~~~~l~~~~~~v~af~R~~~~lvv~N~s~~ 584 (628)
T 1g5a_A 542 IAVRQSNPRFDGGRLVTFNTNNKHIIGYIRNNALLAFGNFSEY 584 (628)
T ss_dssp HHHHHHCGGGCSSCCEECCCSCTTEEEEEETTTEEEEEECSSS
T ss_pred HHHHhhCccccCCceEEEecCCCcEEEEEEeCcEEEEEeCCCC
Confidence 999999999999999888765 689999996689999998653
|
| >3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-56 Score=464.61 Aligned_cols=358 Identities=16% Similarity=0.182 Sum_probs=266.9
Q ss_pred cCCCCCCc--eEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC---CCCCCCcccccCCCCCCCCCHH
Q 014447 17 FLPFTSPA--LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV---APQGYMPGRLYDLDASKYGSQA 91 (424)
Q Consensus 17 ~p~~~~~~--v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~---~~~gY~~~d~~~id~~~~Gt~e 91 (424)
.|.|++.+ |+||++. +++. |||+||+++|+|||+|||++|||+|+++++ .++||+|.||++|| |+|||++
T Consensus 87 ~~~W~~~~~~viY~~~~-~~f~---G~~~gl~~~LdyL~~lGv~~v~l~P~~~~~~~~~~~GY~~~dy~~i~-~~~Gt~~ 161 (655)
T 3ucq_A 87 RPDWLQRPEMVGYVAYT-DRFA---GTLKGVEERLDYLEGLGVKYLHLMPLLRPREGENDGGYAVQDYRAVR-PDLGTMD 161 (655)
T ss_dssp CTTGGGSTTCCEEEECH-HHHH---SSHHHHHTTHHHHHHTTCCEEEECCCEEECSSCCGGGTSEEEEEEEC-GGGCCHH
T ss_pred CCCcccCCceEEEEEeh-hhhC---CCHHHHHHhhHHHHHcCCCEEEECCCcCCCCCCCCCCcCCcCcCccC-ccCCCHH
Confidence 58899887 9999997 6664 899999999999999999999999999876 57999999999999 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEeeecccCCCCCCC---------CCcceee-cCCCCC------CCCCCCCCcccccCCCccCC
Q 014447 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKD---------GRGIYCI-FEGGTS------DDRLDWGPSFICRGDKEYSD 155 (424)
Q Consensus 92 dl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~---------~~~~~~~-~~~~~~------~~~~~w~~~~~~~~~~~~~~ 155 (424)
||++||++||++||+||+|+|+||+|.+|+. ...+|+. +.++.. ..+..|.. .. .....|.+
T Consensus 162 d~~~lv~~~h~~Gi~Vi~D~V~NH~s~~~~wf~~~~~~~~~~~d~y~~~~~~~~~~~~~~~~p~~~~~-~~-~~~~~~~~ 239 (655)
T 3ucq_A 162 DLSALARALRGRGISLVLDLVLNHVAREHAWAQKARAGDPKYRAYFHLFPDRRGPDAFEATLPEIFPD-FA-PGNFSWDE 239 (655)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCHHHHTTBCEESSSHHHHHHHTTCCCSCTT-TS-CSSEEEET
T ss_pred HHHHHHHHHHHCCCEEEEEeeccccccchHHHHHhhcCCCCCcccEEEcCCCCCCccccccCcccccc-CC-CCcccccc
Confidence 9999999999999999999999999998841 1122322 221100 00111110 00 01112322
Q ss_pred C----CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC-------------HHHHHHH---
Q 014447 156 G----QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------PSITKVY--- 215 (424)
Q Consensus 156 ~----~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~-------------~~~~~~~--- 215 (424)
. .+.++++.+...+||||++||+|+++|++++++|++ +||||||+|+|+++. .++++.+
T Consensus 240 ~~~~~~~~~~~~~f~~~qpDLn~~np~V~~~i~~~l~~w~~-~GvDGfRlDa~~~l~k~~g~~~~~~~~~~~~l~~~r~~ 318 (655)
T 3ucq_A 240 EIGEGEGGWVWTTFNSYQWDLNWANPDVFLEFVDIILYLAN-RGVEVFRLDAIAFIWKRLGTDCQNQPEVHHLTRALRAA 318 (655)
T ss_dssp TSSSSSCEEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHHT-TTCCEEEETTGGGSCCCTTSCSSSCHHHHHHHHHHHHH
T ss_pred cccccCCceEeccccCCCCccCCCCHHHHHHHHHHHHHHHH-CCCCEEEEechhhccccCCCccCCcHHHHHHHHHHHHH
Confidence 2 567778888999999999999999999999999997 999999999999984 4566666
Q ss_pred HHhcCC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcC----CceeeecccchHHHHHHh-cchhhhhhhhcC
Q 014447 216 MENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAG----GAVAAFDFTTKGILQAAV-QGELWRLKDSNG 289 (424)
Q Consensus 216 ~~~~~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~df~~~~~~~~~~-~~~~~~~~~~~~ 289 (424)
++...| .+++||+|.. ...+..|+.... ++.++|+|++...+..++ .++...+.+...
T Consensus 319 ~~~~~p~~~~vgE~~~~----------------~~~~~~y~~~~~~~~~~~~~~fdf~l~~~~~~a~~~~~~~~L~~~l~ 382 (655)
T 3ucq_A 319 ARIVAPAVAFKAEAIVA----------------PADLIHYLGTRAHHGKVSDMAYHNSLMVQLWSSLASRNTRLFEEALR 382 (655)
T ss_dssp HHHHCTTCEEEECCCCC----------------HHHHGGGTCCSSSSCCSCSEEECHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHhCCCeEEEEecCCC----------------HHHHHHHhCCCCccccccCeEECccchHHHHHHHhcCCHHHHHHHHH
Confidence 455567 7899999853 455556665332 377899999988877765 444444444433
Q ss_pred CCCCCcCcCCCcceecccCCCCCcCcc-----------------------------------------------cCC---
Q 014447 290 KPPGFIGILPQNAVTFIDNHDTGSTQR-----------------------------------------------LWP--- 319 (424)
Q Consensus 290 ~~~~~~~~~~~~~~~f~~nHD~~r~~~-----------------------------------------------~~~--- 319 (424)
..+... .+...++|++|||+-.+.- +..
T Consensus 383 ~~~~~~--~~~~~v~Fv~nHD~i~l~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~n~~~~~~~i~~~~~ 460 (655)
T 3ucq_A 383 AFPPKP--TSTTWGLYVRCHDDIGWAISDEDAARAGLNGAAHRHFLSDFYSGQFPGSFARGLVFQYNPVNGDRRISGSAA 460 (655)
T ss_dssp TCCCCC--TTCEEEECSCCSSCBCCCCCHHHHHHTTCCHHHHHHHHHHHHTTCSTTCCCCCEEESCCTTTCCCEEECCHH
T ss_pred hCcCCC--CCCeEEEEeeeCCCCCccCChHHHHhhcccchHHHHHHHHHhcccCCcccccCccccccccccccccccccc
Confidence 222221 2455699999999932110 000
Q ss_pred -----------CC-------chhHHHHHHHHHcCCCeeEEecCCCC--------------------------Ccc-----
Q 014447 320 -----------FP-------SDKVMLGYAYILTHPGTPCIFYDHFF--------------------------DWG----- 350 (424)
Q Consensus 320 -----------~~-------~~~~~~a~a~~l~~pG~P~iyyG~~~--------------------------~w~----- 350 (424)
.+ .+++++|++++|++||+|+||||+|+ +|+
T Consensus 461 s~~g~~~al~~~d~~~~~~~~~r~~la~aill~~pGiP~iy~GdE~G~~nd~~~~~d~~~~~~~R~~~R~~~~w~~v~~~ 540 (655)
T 3ucq_A 461 SLAGLEAALETGDPGRIEDAVRRLLLLHTVILGFGGVPLLYMGDELALLNDYAFEDVPEHAPDNRWVHRPQMDWALAERV 540 (655)
T ss_dssp HHTTHHHHHHHCCHHHHHHHHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCGGGGGSTTTTTCGGGGGCCCCCHHHHHHH
T ss_pred chhhHHHHhccCCchhhhhHHHHHHHHHHHHHhCCCeeEEEchHhhcCCCchhhhccccccCcccccccCCCChHHHHHH
Confidence 00 13778999999999999999999864 342
Q ss_pred ----------hHHHHHHHHHHHHhcCCCCCC-CeEEEec-CCCEEEEEE---CCEEEEEECCCCC
Q 014447 351 ----------LKEAISKLAAVRNRNGINTAS-RVNILAS-DADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 351 ----------l~~~~~~L~~lR~~~~al~~G-~~~~~~~-~~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
++.++|+|+++|+++|+|+.| .++.+.. ++.|++|.| +++++|++|.+..
T Consensus 541 ~~d~~s~~~~v~~~~~~Li~lRk~~paf~~~~~~~~l~~~~~~vlaf~R~~~~~~llvv~N~s~~ 605 (655)
T 3ucq_A 541 RQEPSSPAGRVNTGLRHLLRVRRDTPQLHASIESQVLPSPDSRALLLRRDHPLGGMVQVYNFSEE 605 (655)
T ss_dssp HHCTTSHHHHHHHHHHHHHHHHHTCGGGCTTSCCEECCCSSTTEEEEEECCTTCCEEEEEECSSS
T ss_pred hcCCCChHHHHHHHHHHHHHHHHhCccccCCCceEEEeCCCCcEEEEEEECCCCeEEEEEeCCCC
Confidence 378899999999999999988 5887754 478999999 5688888887643
|
| >1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-54 Score=438.26 Aligned_cols=337 Identities=18% Similarity=0.171 Sum_probs=245.7
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhh-HHHHcCCCEEEeCCCC-CCCC-CCCCCcccccCCCCCCCCCHHHHHHHHH
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIP-DLSNAGITHVWLPPPS-QSVA-PQGYMPGRLYDLDASKYGSQADLKSLIQ 98 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~-ylk~lGv~~I~l~Pi~-~~~~-~~gY~~~d~~~id~~~~Gt~edl~~Lv~ 98 (424)
+++|++++|. |+.. ||+|+||+++|+ |||+| ||+|||+||+ +++. +|||++.||++|| |+|||++||++||+
T Consensus 2 ~n~i~~~sf~-d~~~--gg~~~~i~~~ld~yL~~L-v~~IwL~Pi~~~~~~~~~GY~~~dy~~id-p~~Gt~~df~~Lv~ 76 (504)
T 1r7a_A 2 KNKVQLITYA-DRLG--DGTIKSMTDILRTRFDGV-YDGVHILPFFTPFDGADAGFDPIDHTKVD-ERLGSWDDVAELSK 76 (504)
T ss_dssp CSSCEEEECS-SSBS--SSSHHHHHHHHHHHSTTT-CCEEEECCCEECSSSSSTTSSCSEEEEEC-TTTCCHHHHHHHHT
T ss_pred CccEeeeeeE-eccC--CCCHHHHHHHHHHHHHHH-hCeEEECCcccCCCCCCCCCCccChhhcC-cccCCHHHHHHHHh
Confidence 5789999997 8773 589999999998 99999 9999999999 8886 9999999999999 99999999999996
Q ss_pred HHHHcCCEEEEeeecccCCCCCCC-----------CCcceee-----cCCCCCCCCCCCCCcccccCC-----CccCCCC
Q 014447 99 AFRQKGIKCLADMVINHRTAERKD-----------GRGIYCI-----FEGGTSDDRLDWGPSFICRGD-----KEYSDGQ 157 (424)
Q Consensus 99 ~aH~~Gi~VilD~v~NH~~~~~~~-----------~~~~~~~-----~~~~~~~~~~~w~~~~~~~~~-----~~~~~~~ 157 (424)
||+||||+|+|||+.+|+. +..+|+. ++++.+ ..+|...+..... +.|. +.
T Consensus 77 -----Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~~y~~~y~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~-~~ 148 (504)
T 1r7a_A 77 -----THNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGAT--EEDLAGIYRPRPGLPFTHYKFA-GK 148 (504)
T ss_dssp -----TSEEEEEEECSEEETTSHHHHHHHHHGGGSTTGGGBCBHHHHCTTCBC--HHHHHTSCCSSSSCSEEEEEET-TE
T ss_pred -----CCEEEEEECCCcCCCcchHHHHHhhcCCCCccccceEeccccCcCCCC--CcchhhhcCCCCCCCCCCceEc-CC
Confidence 9999999999999988741 1123332 111110 0011111100000 1111 23
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC----------HHH---HHHH---HHhcCC
Q 014447 158 GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA----------PSI---TKVY---MENTSP 221 (424)
Q Consensus 158 ~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~----------~~~---~~~~---~~~~~p 221 (424)
+.+.++.+...+||||++||+||++|++++++|++ +||||||+|+++++. +++ ++++ ++. .+
T Consensus 149 ~~~~~~~f~~~~pdLn~~np~Vr~~i~~~~~~W~~-~gvDGfR~Da~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 226 (504)
T 1r7a_A 149 TRLVWVSFTPQQVDIDTDSDKGWEYLMSIFDQMAA-SHVSYIRLDAVGYGAKEAGTSCFMTPKTFKLISRLREEGVK-RG 226 (504)
T ss_dssp EEEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEEETGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHH-TT
T ss_pred ceEEECccCCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEcccccccccCCCcccCchhHHHHHHHHHHHhCc-CC
Confidence 34445667789999999999999999999999995 999999999998773 233 3333 222 34
Q ss_pred CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh-cchhhhhhhhcCCCCCCcCcCCC
Q 014447 222 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQ 300 (424)
Q Consensus 222 ~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
+++|||+|... .. ......+..+.|+|++...+..++ .+....+...... .|.
T Consensus 227 ~~~igE~~~~~---------------~~----~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~-------~p~ 280 (504)
T 1r7a_A 227 LEILIEVHSYY---------------KK----QVEIASKVDRVYDFALPPLLLHALSTGHVEPVAHWTDI-------RPN 280 (504)
T ss_dssp CEEEECCCSCH---------------HH----HHHHHTTSSEEEECSHHHHHHHHHHHCCCHHHHHHHHH-------SCS
T ss_pred cEEEEEecccc---------------cc----ccccCCccceEECchhhhhhhhhhhccchHHHHHHHHh-------Ccc
Confidence 88999998520 11 111235678889998866555544 3332222222111 134
Q ss_pred cceecccCCCCCcCccc--------------------------------------------------------CCCCchh
Q 014447 301 NAVTFIDNHDTGSTQRL--------------------------------------------------------WPFPSDK 324 (424)
Q Consensus 301 ~~~~f~~nHD~~r~~~~--------------------------------------------------------~~~~~~~ 324 (424)
..++|++|||+.|+... .+...++
T Consensus 281 ~~~nfl~nHD~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~~~~~ 360 (504)
T 1r7a_A 281 NAVTVLDTHDGIGVIDIGSDQLDRSLKGLVPDEDVDNLVNTIHANTHGESQAATGAAASNLDLYQVNSTYYSALGCNDQH 360 (504)
T ss_dssp SEEECSCCSSCBCSTTTSCCSSCTTSCCSSCHHHHHHHHHHHHHHTTTHHHHHSGGGSBCSCSSSBCSCHHHHTTTCHHH
T ss_pred ccceecccCCcccccccccccccccccccCCHHHHHHHHHHHhhccccccccccccccccCCccccccchhhhccCcHHH
Confidence 56999999999985411 1112357
Q ss_pred HHHHHHHHHcCCCeeEEecCCC-----------------------CCcc---------hHHHHHHHHHHHHhcCCCCCCC
Q 014447 325 VMLGYAYILTHPGTPCIFYDHF-----------------------FDWG---------LKEAISKLAAVRNRNGINTASR 372 (424)
Q Consensus 325 ~~~a~a~~l~~pG~P~iyyG~~-----------------------~~w~---------l~~~~~~L~~lR~~~~al~~G~ 372 (424)
+++|++++|++||+|+|||||| |+|+ +++++|+|++||+++|+| .|.
T Consensus 361 ~~la~a~llt~pG~P~iy~GdE~G~~~~~~~~~~~~~~r~~~r~~~~W~~~~~~~~~~~~~~~~~Li~lRk~~~al-~G~ 439 (504)
T 1r7a_A 361 YIAARAVQFFLPGVPQVYYVGALAGKNDMELLRKTNNGRDINRHYYSTAEIDENLKRPVVKALNALAKFRNELDAF-DGT 439 (504)
T ss_dssp HHHHHHHHHHSSSEEEEEHHHHTTCCCCHHHHHHHCBGGGGGCCCBCHHHHHHHTTSHHHHHHHHHHHHHHHCGGG-GSE
T ss_pred HHHHHHHHHhCCCceEEEeccccccCCCccccccccCCCCcccCCCChhHhhhhhhhHHHHHHHHHHHHHhhCccc-cCc
Confidence 8899999999999999999986 3452 779999999999999999 999
Q ss_pred eEEEecCCCEEEEEE---CCEEEEEECCCCC
Q 014447 373 VNILASDADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 373 ~~~~~~~~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
++....++++++|.| +++++|++|.+..
T Consensus 440 ~~~~~~~~~v~af~R~~~~~~~lv~~N~~~~ 470 (504)
T 1r7a_A 440 FSYTTDDDTSISFTWRGETSQATLTFEPKRG 470 (504)
T ss_dssp EEEEEETTTEEEEEEECSSCEEEEEECGGGS
T ss_pred eEEecCCCCEEEEEEECCCeEEEEEEECCCC
Confidence 888777889999999 5789999998654
|
| >2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-53 Score=443.96 Aligned_cols=328 Identities=16% Similarity=0.161 Sum_probs=235.8
Q ss_pred CCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHH
Q 014447 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQ 98 (424)
Q Consensus 21 ~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~ 98 (424)
+++.|+||++. +++. ++|||+||+++|+|||+||||+||||||++++ .+|||++.||++|| |+|||.+|||+||+
T Consensus 124 ~~~~viYei~~-~~f~-~~G~~~gi~~~L~yl~~lGv~~I~L~Pi~~~~~~~~wGY~~~~y~~~~-~~~Gt~~d~~~lv~ 200 (602)
T 2bhu_A 124 LADCVFYEVHV-GTFT-PEGTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPY-APYGRPEDLMALVD 200 (602)
T ss_dssp GGGCCEEEECH-HHHS-SSCSHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEEC-GGGCCHHHHHHHHH
T ss_pred cccceEEEEee-cccc-cCCCHHHHHHHHHHHHHcCCCEEEECChhhccCCCCCCcccccCcccC-cCCCCHHHHHHHHH
Confidence 35679999997 4443 37999999999999999999999999999876 46899999999999 99999999999999
Q ss_pred HHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHH
Q 014447 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPR 178 (424)
Q Consensus 99 ~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~ 178 (424)
+||++||+||||+|+||++.+++... .|. +.|+.. . + .....+++|+++|+
T Consensus 201 ~~H~~Gi~VilD~V~NH~~~~~~~~~----~~~-------~~~~~~---~----~-----------~~~w~~~ln~~~~~ 251 (602)
T 2bhu_A 201 AAHRLGLGVFLDVVYNHFGPSGNYLS----SYA-------PSYFTD---R----F-----------SSAWGMGLDYAEPH 251 (602)
T ss_dssp HHHHTTCEEEEEECCSCCCSSSCCHH----HHC-------GGGEEE---E----E-----------ECSSSEEECTTSHH
T ss_pred HHHHCCCEEEEEecccccccCCcccc----ccC-------cccccC---C----C-----------CCCCCCCccCCCHH
Confidence 99999999999999999987664100 010 011100 0 0 00113579999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEecccCCC----CHHHHHHHHH---hcCCCeEEeeecCCCCCCCCCCCCCCCCCchhHH
Q 014447 179 VQKELSDWMNWLKTEIGFDGWRFDFVKGY----APSITKVYME---NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGAL 251 (424)
Q Consensus 179 v~~~l~~~~~~w~~~~gvDGfR~D~a~~~----~~~~~~~~~~---~~~p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~ 251 (424)
||++|++++++|++++||||||+|+++++ +.+||+++.+ +..++++|||.+....
T Consensus 252 v~~~i~~~~~~W~~~~gvDGfR~D~~~~i~~~~~~~fl~~~~~~v~~~~~~~li~E~~~~~~------------------ 313 (602)
T 2bhu_A 252 MRRYVTGNARMWLRDYHFDGLRLDATPYMTDDSETHILTELAQEIHELGGTHLLLAEDHRNL------------------ 313 (602)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEETTGGGCCCCSSSCHHHHHHHHHHTTCSCCEEEEECSSCC------------------
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEechHhhhccchHHHHHHHHHHHhhcCCeEEEEEeCCCCc------------------
Confidence 99999999999998899999999999999 6779998844 3434889999986422
Q ss_pred HHHHHhcCCceeeecccchHHHHHHhcchh-----------hhhhhh----c------CCCC------C--CcCcCCCcc
Q 014447 252 KDWVQAAGGAVAAFDFTTKGILQAAVQGEL-----------WRLKDS----N------GKPP------G--FIGILPQNA 302 (424)
Q Consensus 252 ~~~~~~~~~~~~~~df~~~~~~~~~~~~~~-----------~~~~~~----~------~~~~------~--~~~~~~~~~ 302 (424)
.++....+++..+++.++..+...+.++. ..+... . .... + .....+...
T Consensus 314 -~~~~~~~g~~~~~n~~~~~~l~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 392 (602)
T 2bhu_A 314 -PDLVTVNHLDGIWTDDFHHETRVTLTGEQEGYYAGYRGGAEALAYTIRRGWRYEGQFWAVKGEEHERGHPSDALEAPNF 392 (602)
T ss_dssp -THHHHTTCCSEEECTHHHHHHHHHHHCCCSGGGGGCCCSHHHHHHHHHHSSSCEEEEECCTTCCEEEECCCTTCCGGGE
T ss_pred -ccccCCCCcceEECchhhHHHHHHhcCCCcccccccccCHHHHHHHHHhccccccccchhhccccccCccccCCCccce
Confidence 01111123344444444443333322210 011100 0 0000 0 001124556
Q ss_pred eecccCCCCC-------cCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC----------------------------
Q 014447 303 VTFIDNHDTG-------STQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF---------------------------- 347 (424)
Q Consensus 303 ~~f~~nHD~~-------r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~---------------------------- 347 (424)
++|++|||+. |.........+++++|+++++++||+|+||||||+
T Consensus 393 ~~fl~nHD~~~n~~~g~r~~~~~~~~~~~~k~a~a~ll~~pG~P~iy~G~E~G~~~~~~~~~~~D~~~~~~~r~g~~~~~ 472 (602)
T 2bhu_A 393 VYCIQNHDQIGNRPLGERLHQSDGVTLHEYRGAAALLLTLPMTPLLFQGQEWAASTPFQFFSDHAGELGQAVSEGRKKEF 472 (602)
T ss_dssp EEESCCHHHHHTSTTCCCGGGSTTCCHHHHHHHHHHHHHSSSEEEEETTGGGTCSSCCCCCCCCCHHHHHHHHHHHHHHC
T ss_pred eeehhcCccccccCccchhhhhhcccHHHHHHHHHHHHhCCCCcEEecchhhcCcCCCcccccCCHHHhhhhhhcchhhh
Confidence 9999999983 33322223557899999999999999999999863
Q ss_pred -------------------------Cc---------chHHHHHHHHHHHHhcCCCCCCCeEEEec---CCCEEEEEE---
Q 014447 348 -------------------------DW---------GLKEAISKLAAVRNRNGINTASRVNILAS---DADVYIAAI--- 387 (424)
Q Consensus 348 -------------------------~w---------~l~~~~~~L~~lR~~~~al~~G~~~~~~~---~~~v~~~~r--- 387 (424)
+| +++++||+|++||+++|+|+.|.+..+.. ++ +++|.|
T Consensus 473 ~~~~~~~~~r~p~~~~~~~f~~~~l~w~~~q~~~~~s~~~~yr~Li~LRk~~pal~~g~~~~~~~~~~~~-v~a~~R~~~ 551 (602)
T 2bhu_A 473 GGFSGFSGEDVPDPQAEQTFLNSKLNWAEREGGEHARTLRLYRDLLRLRREDPVLHNRQRENLTTGHDGD-VLWVRTVTG 551 (602)
T ss_dssp ---------CCCCTTSHHHHHTTSCCSGGGGSHHHHHHHHHHHHHHHHHHHCTTTTCCCGGGEEEEEETT-EEEEEEEET
T ss_pred hhcccccccCCCCCccccccccccCChhhhcccccHHHHHHHHHHHHHHhcChhhhcCCcccccccccCC-eEEEEEEeC
Confidence 34 37899999999999999999998765443 55 999998
Q ss_pred CCEEEEEECCCCC
Q 014447 388 GDRVIMKIGPKMD 400 (424)
Q Consensus 388 ~~~~lv~ln~~~~ 400 (424)
+++++|++|.+..
T Consensus 552 ~~~~lVv~N~s~~ 564 (602)
T 2bhu_A 552 AGERVLLWNLGQD 564 (602)
T ss_dssp TEEEEEEEECSSS
T ss_pred CCcEEEEEeCCCC
Confidence 5678888887643
|
| >3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-53 Score=441.03 Aligned_cols=328 Identities=13% Similarity=0.142 Sum_probs=238.5
Q ss_pred CCceEEEeecCCCCCC---CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC---------------CCC--CCccc---
Q 014447 22 SPALLFQGFNWESSNK---AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---------------PQG--YMPGR--- 78 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~---~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~---------------~~g--Y~~~d--- 78 (424)
...++|++|. .++.+ .+|||+||+++|+|||+||||+|||+||++++. ++| |++.|
T Consensus 230 ~~~~iYEi~~-rsf~~~~~~~Gd~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~g~~n~~~~~~~d~GspY~i~d~~~ 308 (695)
T 3zss_A 230 LYGAWYEFFP-RSEGTPHTPHGTFRTAARRLPAIAAMGFDVVYLPPIHPIGTTHRKGRNNTLSATGDDVGVPWAIGSPEG 308 (695)
T ss_dssp HCEEEEECCG-GGSCCSSCCSCCHHHHGGGHHHHHHTTCCEEEECCCSCBCCTTCCCGGGCSSCCTTCCCCTTSBCBTTB
T ss_pred ccceEEEEeh-hHhcCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCcccCCccccccccccccccccCCCCcccccCCCC
Confidence 3458888886 44433 289999999999999999999999999999753 345 88888
Q ss_pred -ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCC
Q 014447 79 -LYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQ 157 (424)
Q Consensus 79 -~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 157 (424)
|++|| |+|||++|||+||++||++||+||||+|+|| +.+|+.... .++|+.....+. ..|..
T Consensus 309 ~y~~id-p~~Gt~edfk~LV~~aH~~GI~VilD~V~Nh-s~~~~~~~~------------~~dwf~~~~dg~-~~~~~-- 371 (695)
T 3zss_A 309 GHDSIH-PALGTLDDFDHFVTEAGKLGLEIALDFALQC-SPDHPWVHK------------HPEWFHHRPDGT-IAHAE-- 371 (695)
T ss_dssp CTTSCC-TTTCCHHHHHHHHHHHHHTTCEEEEEECCEE-CTTSTHHHH------------CGGGSCCCTTSC-CCCEE--
T ss_pred CccccC-cccCCHHHHHHHHHHHHHCCCEEEEEeeccC-Cccchhhhc------------ccceeeecCCCC-cccCC--
Confidence 99999 9999999999999999999999999999998 566642100 112221110000 00000
Q ss_pred CCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC-CeEEeeecCC
Q 014447 158 GNDDTGEDFQPAPDIDHLN--PRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP-DFAVGEKWDS 231 (424)
Q Consensus 158 ~~~~~~~~~~~~~dln~~n--p~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p-~~~v~E~~~~ 231 (424)
.....|.++++||++| |+|+++|++++++|++ +||||||+|++++++.+||+++ +++.+| ++++||+|..
T Consensus 372 ---~~~~~~~~~~dLn~~n~~p~V~~~l~~~l~~Wi~-~GVDGfRlD~a~~~~~~f~~~~~~~v~~~~pd~~~vgE~~~~ 447 (695)
T 3zss_A 372 ---NPPKKYQDIYPIAFDADPDGLATETVRILRHWMD-HGVRIFRVDNPHTKPVAFWERVIADINGTDPDVIFLAEAFTR 447 (695)
T ss_dssp ---ETTEEETTCEECCCSSCHHHHHHHHHHHHHHHHH-TTCCEEEESSGGGSCHHHHHHHHHHHHHHCTTCEEEECCCSC
T ss_pred ---CCCccccccccccccCCcHHHHHHHHHHHHHHHH-hCCCEEEecCcchhhHHHHHHHHHHHHhhCCCceEEEeecCC
Confidence 0112345678999999 9999999999999998 9999999999999999999999 445577 7899999952
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcchhhhhhhhcCCCCCCcCcCCCcceecccCCCC
Q 014447 232 LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT 311 (424)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~ 311 (424)
...+..+.. .+++..+++....... ..+..+...... .. . .....++|++|||+
T Consensus 448 ----------------p~~~~~l~~--~gfd~~~~y~~~~~~~----~~l~~~~~~l~~--~~-~-~~~~~~~FvdNHD~ 501 (695)
T 3zss_A 448 ----------------PAMMATLAQ--IGFQQSYTYFTWRNTK----QELTEYLTELSG--EA-A-SYMRPNFFANTPDI 501 (695)
T ss_dssp ----------------HHHHHHHHH--TTCSEEECSGGGCCSH----HHHHHHHHHHTT--GG-G-GTCCEEEESCBTTB
T ss_pred ----------------hHHhhhhhc--cCcCceechhhhhcch----hHHHHHHHhhhh--hh-h-hcccceecccCCCc
Confidence 223333332 3566666654321111 011111111110 00 0 01234689999999
Q ss_pred CcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC------------------------Cc--------chHHHHHHHH
Q 014447 312 GSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF------------------------DW--------GLKEAISKLA 359 (424)
Q Consensus 312 ~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~------------------------~w--------~l~~~~~~L~ 359 (424)
.|..+..+ +.++.++++++++|+||+|+||||+|+ +| +++++||+|+
T Consensus 502 ~R~~s~~g-~~~~~kla~all~tl~GiP~IYyGdE~G~~g~~dp~~~ey~d~e~~~r~p~~W~~~~~~~~~l~~~ik~Li 580 (695)
T 3zss_A 502 LHAYLQHG-GRPAFEVRAVLAATLSPTWGIYSGYELCENTPLREGSEEYLDSEKYQLKPRDWTRAAREGTTIAPLVTRLN 580 (695)
T ss_dssp CCHHHHHH-CHHHHHHHHHHHHHHCSEEEEETTGGGTCCCBSSTTCCSBTTCTTSSCCCCCHHHHHHHTCSCHHHHHHHH
T ss_pred cchhcccc-hHHHHHHHHHHHHhcCCCcEEEcCeeccccCCCCCCccccccccccccCCCCccccccccchHHHHHHHHH
Confidence 99765543 456788999999999999999999854 34 3899999999
Q ss_pred HHHHhcCCCCCC-CeEEEec-CCCEEEEEE---CCEEEEEECCC
Q 014447 360 AVRNRNGINTAS-RVNILAS-DADVYIAAI---GDRVIMKIGPK 398 (424)
Q Consensus 360 ~lR~~~~al~~G-~~~~~~~-~~~v~~~~r---~~~~lv~ln~~ 398 (424)
+||+++|+|+.| .++++.. ++++++|.| +++++|++|.+
T Consensus 581 ~LRk~~paL~~g~~~~~~~~~~~~vlaf~R~~~~~~vlVviN~s 624 (695)
T 3zss_A 581 TIRRENPALRQLRDLHFHPTDKEEVIAYSKRQGSNTVLVVVNLD 624 (695)
T ss_dssp HHHHHCGGGGCSSCCEECCBSCTTEEEEEEEETTEEEEEEEECC
T ss_pred HHHHhCHHhcCCCcEEEEEcCCCcEEEEEEEcCCCEEEEEEECC
Confidence 999999999885 6777653 578999999 67999999986
|
| >1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-53 Score=427.24 Aligned_cols=328 Identities=20% Similarity=0.274 Sum_probs=234.0
Q ss_pred CCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC-----------CCCCCCcccccCCCCCCCCC
Q 014447 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-----------APQGYMPGRLYDLDASKYGS 89 (424)
Q Consensus 21 ~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-----------~~~gY~~~d~~~id~~~~Gt 89 (424)
.++.||||+|.| +|+||+++|+|||+||||+|||+||++.+ .+|||+++||+.+| |+|||
T Consensus 3 ~~~~~~~q~f~~--------~~~~i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~~~~~gY~~~~y~~~~-~~~G~ 73 (422)
T 1ua7_A 3 IKSGTILHAWNW--------SFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGN-RYLGT 73 (422)
T ss_dssp TTTSCEEECTTB--------CHHHHHHTHHHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEE-TTTEE
T ss_pred CcCcEEEEEecC--------CHHHHHHHHHHHHHcCCCEEEeCCccccccCCcCcCccCCccccccceeeeccC-CCCCC
Confidence 367899999997 59999999999999999999999998742 16899999999999 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA 169 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (424)
++||++||++||++||+||+|+|+||++.+++..... .. ...+|+... .....|.+. ....++++.++
T Consensus 74 ~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~---~~-----~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~ 141 (422)
T 1ua7_A 74 EQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNE---VK-----SIPNWTHGN--TQIKNWSDR--WDVTQNSLLGL 141 (422)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECCSBCCSCTTTSCHH---HH-----TSTTCEEEC--CBCCCTTCH--HHHHHSBBTTB
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccCcccCCccccCcc---cc-----CCcccccCC--CCCCCcCch--hcccccccCCC
Confidence 9999999999999999999999999999987531110 00 012232110 000111110 00012356789
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC--------HHHHHHHHHhcCC-CeEEeeecCCCCCCCCCCC
Q 014447 170 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA--------PSITKVYMENTSP-DFAVGEKWDSLSYGPDGKP 240 (424)
Q Consensus 170 ~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~--------~~~~~~~~~~~~p-~~~v~E~~~~~~~~~~~~~ 240 (424)
||||++||+||++|++++++|++ +||||||+|+|++++ .+||+++. .+| .+++||+|.+..
T Consensus 142 ~dln~~~~~v~~~l~~~~~~w~~-~gvDGfR~D~~~~~~~~~~~~~~~~f~~~~~--~~~~~~~vgE~~~~~~------- 211 (422)
T 1ua7_A 142 YDWNTQNTQVQSYLKRFLERALN-DGADGFRFDAAKHIELPDDGSYGSQFWPNIT--NTSAEFQYGEILQDSA------- 211 (422)
T ss_dssp CEECTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCCTTSGGGCCSHHHHHT--CSSCSEEEECCCCSTT-------
T ss_pred CccccCCHHHHHHHHHHHHHHHH-cCCCEEEEEhhhhcCccchhhhHHHHHHHhh--cCCCceEEEEeecCCC-------
Confidence 99999999999999999999997 999999999999986 57999885 345 889999996421
Q ss_pred CCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch---hhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCccc
Q 014447 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRL 317 (424)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~ 317 (424)
.....|.... ...+|.+...+..++.+. ...+.+. .. ...+..+++|++|||+.|....
T Consensus 212 --------~~~~~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~---~~~~~~~~~f~~nHD~~r~~~~ 273 (422)
T 1ua7_A 212 --------SRDAAYANYM----DVTASNYGHSIRSALKNRNLGVSNISHY---AS---DVSADKLVTWVESHDTYANDDE 273 (422)
T ss_dssp --------CCHHHHHTTS----EEECHHHHHHHHHHHHHTCCCHHHHSSC---SS---SSCGGGEEECSSCHHHHHSTTC
T ss_pred --------ccHHHHhhcC----CcchhHHHHHHHHHHhCCCcCHHHHhhc---cc---cCChhheeEEEecCCCCCCCcc
Confidence 2234565422 234555566666666432 2233221 11 2245677999999999987532
Q ss_pred --CCCCchhHHHHHHHHHc-CCCeeEEecCCCCC-----c-----------chHHHHHHHHHHHHhcCCCCCCCeEEEec
Q 014447 318 --WPFPSDKVMLGYAYILT-HPGTPCIFYDHFFD-----W-----------GLKEAISKLAAVRNRNGINTASRVNILAS 378 (424)
Q Consensus 318 --~~~~~~~~~~a~a~~l~-~pG~P~iyyG~~~~-----w-----------~l~~~~~~L~~lR~~~~al~~G~~~~~~~ 378 (424)
...+.++.++|++++++ .||+|+||||+|++ | .++. ++.|.++|+.+++++ |....+..
T Consensus 274 ~~~~~~~~~~~la~a~ll~~~~G~P~iy~G~E~g~~~~~~p~~~~~~~~~~~~~~-~~~l~~l~~~~~al~-g~~~~~~~ 351 (422)
T 1ua7_A 274 ESTWMSDDDIRLGWAVIASRSGSTPLFFSRPEGGGNGVRFPGKSQIGDRGSALFE-DQAITAVNRFHNVMA-GQPEELSN 351 (422)
T ss_dssp SSTTCCHHHHHHHHHHHHTSSSSEEEEECCCTTCBTTBSCCSSCBTBSCCCGGGG-CHHHHHHHHHHHHHT-TCCCCEEC
T ss_pred ccccCCHHHHHHHHHHHHhCCCCeeEEecCcccCCCCCCCCccCcCCCCCCchhh-CHHHHHHHHHHHhcC-CCceEEEe
Confidence 22345678999999999 59999999999853 2 1331 244444444444564 55444443
Q ss_pred ---CCCEEEEEECCEEEEEECCCC
Q 014447 379 ---DADVYIAAIGDRVIMKIGPKM 399 (424)
Q Consensus 379 ---~~~v~~~~r~~~~lv~ln~~~ 399 (424)
++++++|.|.++.+|++|.+.
T Consensus 352 ~~~~~~v~af~R~~~~lVv~N~~~ 375 (422)
T 1ua7_A 352 PQGNNQIFMNQRGSHGVVLANAGS 375 (422)
T ss_dssp GGGCTTEEEEEETTTEEEEEECSS
T ss_pred eCCCceEEEEEcCCcEEEEEeCCC
Confidence 578999999888999999864
|
| >2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-53 Score=446.17 Aligned_cols=347 Identities=19% Similarity=0.259 Sum_probs=239.0
Q ss_pred CCCceEEEeecC---CCCCCC---CCcHHHHHh-----------hhhHHHHcCCCEEEeCCCCCCCC----------CCC
Q 014447 21 TSPALLFQGFNW---ESSNKA---GGWYNSLKN-----------SIPDLSNAGITHVWLPPPSQSVA----------PQG 73 (424)
Q Consensus 21 ~~~~v~~~~f~~---ds~~~~---~G~~~gi~~-----------~L~ylk~lGv~~I~l~Pi~~~~~----------~~g 73 (424)
.++.|+||++.- ++.+++ .|||.|+++ +|+|||+||||+||||||++++. +||
T Consensus 212 ~~~~viYei~v~~F~~~~~~g~~~~G~~~g~~e~~~~~l~Gi~~~LdyLk~LGvtaI~L~Pi~~~~~~de~~~~~~~~wG 291 (718)
T 2e8y_A 212 PVDAVIYETHLRDFSIHENSGMINKGKYLALTETDTQTANGSSSGLAYVKELGVTHVELLPVNDFAGVDEEKPLDAYNWG 291 (718)
T ss_dssp GGGCCEEEECHHHHHHSTTSCCSSTTSGGGGGCTTCBCTTSCBCHHHHHHHHTCSEEEESCCEEESSSCTTSGGGCCCCC
T ss_pred hhhcEEEEEehHHhcCCCCCCCCCCCCeeccccccccccccchhhhHHHHHcCCCEEEECCccccCccccccccccCcCC
Confidence 456899999951 222233 388888876 89999999999999999997543 599
Q ss_pred CCcccccCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcc
Q 014447 74 YMPGRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 145 (424)
Q Consensus 74 Y~~~d~~~id~~~~Gt--------~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 145 (424)
|++.||++++ ++||+ ++|||+||++||++||+||||+|+||++.+|. .| |.+.. +.|+...
T Consensus 292 Yd~~dy~a~~-~~yg~~p~~g~~~~~dfk~LV~~aH~~GI~VIlDvV~NHt~~~~~----~~--f~~~~----p~y~~~~ 360 (718)
T 2e8y_A 292 YNPLHFFAPE-GSYASNPHDPQTRKTELKQMINTLHQHGLRVILDVVFNHVYKREN----SP--FEKTV----PGYFFRH 360 (718)
T ss_dssp CSEEEEEEEC-STTSSCSSSHHHHHHHHHHHHHHHHHTTCEEEEEECTTCCSSGGG----SH--HHHHS----TTTSBCB
T ss_pred CCccCCCCcC-cccccCCCCccccHHHHHHHHHHHHHCCCEEEEEEecccccCccc----cc--ccccC----CCeEEec
Confidence 9999999999 99997 69999999999999999999999999998762 01 11100 1121100
Q ss_pred cccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC-
Q 014447 146 ICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP- 221 (424)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p- 221 (424)
.....+.+ + ....+|||++||+||++|++++++|++++||||||+|++++++.++|+++ +++..|
T Consensus 361 --~~~g~~~n-------~--~~~g~dln~~np~Vr~~i~d~~~~Wl~e~gVDGfR~D~~~~~~~~~~~~~~~~~~~~~p~ 429 (718)
T 2e8y_A 361 --DECGKPSN-------G--TGVGNDIASERRMARKFIADCVVYWLEEYNVDGFRFDLLGILDIDTVLYMKEKATKAKPG 429 (718)
T ss_dssp --CTTSSBCC-------T--TSSSCCBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHHHSTT
T ss_pred --CCCCcccC-------C--CCcccccccCCHHHHHHHHHHHHHHHHHhCCCEEEEeccccCCHHHHHHHHHHHHHhCCC
Confidence 00011111 1 11236899999999999999999999999999999999999999999988 445567
Q ss_pred CeEEeeecCCCC-CCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHH---------Hhcch---hhhhhhhc
Q 014447 222 DFAVGEKWDSLS-YGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQA---------AVQGE---LWRLKDSN 288 (424)
Q Consensus 222 ~~~v~E~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~---------~~~~~---~~~~~~~~ 288 (424)
+++|||.|.... ..... .+. .+-...-.....|++.++..+.. ...|. ...+....
T Consensus 430 ~~ligE~w~~~~~~~~~~--~~~---------~~~~~~~~~~~~~n~~~~~~~~~~~f~~~~~~f~~g~~~~~~~l~~~l 498 (718)
T 2e8y_A 430 ILLFGEGWDLATPLPHEQ--KAA---------LANAPRMPGIGFFNDMFRDAVKGNTFHLKATGFALGNGESAQAVMHGI 498 (718)
T ss_dssp CEEEECCCCCCCSSCGGG--BCC---------GGGGGGCTTCEEECHHHHHHHHCCSSSTTCCCGGGTCGGGHHHHHHHH
T ss_pred eEEEEeecCCCCcccccc--ccc---------cccccCCCceEEEChHHHHHhhcccccccccceecCChhhHHHHHHHH
Confidence 789999986422 00000 000 00000001123455444444332 01111 11222111
Q ss_pred CC-C--CC--CcCcCCCcceecccCCCCCcCcccCC----C-C----chhHHHHHHHHHcCCCeeEEecCCCC-------
Q 014447 289 GK-P--PG--FIGILPQNAVTFIDNHDTGSTQRLWP----F-P----SDKVMLGYAYILTHPGTPCIFYDHFF------- 347 (424)
Q Consensus 289 ~~-~--~~--~~~~~~~~~~~f~~nHD~~r~~~~~~----~-~----~~~~~~a~a~~l~~pG~P~iyyG~~~------- 347 (424)
.. . .. .....|...++|++|||+.|+...+. . . .+++++|++++|++||+|+||||||+
T Consensus 499 ~~~~~~~~~~~~~~~~~~~vnfv~nHD~~rl~~~~~~~~~~~~~~~~~~~~kla~a~ll~~~G~P~iy~GdE~g~~~~g~ 578 (718)
T 2e8y_A 499 AGSSGWKALAPIVPEPSQSINYVESHDNHTFWDKMSFALPQENDSRKRSRQRLAVAIILLAQGVPFIHSGQEFFRTKQGV 578 (718)
T ss_dssp BTTSCBTTBCCSSSSGGGEEECSCCSSSSCHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTSBSEEEEETTGGGTCCCTTC
T ss_pred hcCccccccccccCCcccEEEEEecCCCchHHhhhhccCCCCCHHHHHHHHHHHHHHHHHCCCCcEEeechhhCccCCCC
Confidence 10 0 00 01123456799999999998754321 0 1 25789999999999999999999974
Q ss_pred -------------Cc-------chHHHHHHHHHHHHhcCCCCCCCe-------EEEecCCCEEEEEEC--------CEEE
Q 014447 348 -------------DW-------GLKEAISKLAAVRNRNGINTASRV-------NILASDADVYIAAIG--------DRVI 392 (424)
Q Consensus 348 -------------~w-------~l~~~~~~L~~lR~~~~al~~G~~-------~~~~~~~~v~~~~r~--------~~~l 392 (424)
+| +++++||+|++||+++|+|+.|.+ .++..++++++|.|. ++++
T Consensus 579 ~~~y~~~d~~~~~~W~~~~~~~~l~~~~~~Li~lRk~~pal~~g~~~~i~~~~~~~~~~~~v~a~~r~~~~~~~~~~~~l 658 (718)
T 2e8y_A 579 ENSYQSSDSINQLDWDRRETFKEDVHYIRRLISLRKAHPAFRLRSAADIQRHLECLTLKEHLIAYRLYDLDEVDEWKDII 658 (718)
T ss_dssp SCCTTCCHHHHSCCHHHHHHTHHHHHHHHHHHHHHHHCGGGGCCSHHHHHHHEEEEEECSSEEEEEECCCTTTCSSSEEE
T ss_pred CcccCCCccccccCcccccccCHHHHHHHHHHHHHhhChhhccCchhhhccceEEecCCCCEEEEEEecCCCCCCCCeEE
Confidence 34 378999999999999999999975 344567789999994 3899
Q ss_pred EEECCCCC
Q 014447 393 MKIGPKMD 400 (424)
Q Consensus 393 v~ln~~~~ 400 (424)
|++|.+.+
T Consensus 659 Vv~N~~~~ 666 (718)
T 2e8y_A 659 VIHHASPD 666 (718)
T ss_dssp EEEECSSS
T ss_pred EEEeCCCC
Confidence 99998643
|
| >2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-52 Score=415.91 Aligned_cols=295 Identities=16% Similarity=0.227 Sum_probs=225.9
Q ss_pred cCCCCCCceEEEee-cCCCC-CCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHH
Q 014447 17 FLPFTSPALLFQGF-NWESS-NKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLK 94 (424)
Q Consensus 17 ~p~~~~~~v~~~~f-~~ds~-~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~ 94 (424)
.+.|++..|+||++ . +|+ ++++|||+||+++|||||+||||+|||+||++++. .+|++.||++|| |+|||++||+
T Consensus 9 ~~~ww~~~viYqi~~~-~sf~gdg~Gdl~gi~~~Ldyl~~LGv~~i~l~Pi~~~~~-~~y~~~dy~~id-p~~Gt~~d~~ 85 (424)
T 2dh2_A 9 AQKWWHTGALYRIGDL-QAFQGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQK-DDVAQTDLLQID-PNFGSKEDFD 85 (424)
T ss_dssp CCCGGGSSCEEEECCH-HHHHCTTCCSHHHHHTTHHHHHHTTCSEEEECCCEEECT-TCSTTEEEEEEC-GGGCCHHHHH
T ss_pred cccccccCeEEEEcCc-cccCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCC-CCCCcccccccC-ccCCCHHHHH
Confidence 46799999999998 6 443 67899999999999999999999999999999975 469999999999 9999999999
Q ss_pred HHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCC
Q 014447 95 SLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDH 174 (424)
Q Consensus 95 ~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~ 174 (424)
+||++||++|||||||+|+||+| +|+ |+ ..
T Consensus 86 ~lv~~ah~~Gi~vilD~V~NH~s-~~~-------------------wF------------------------------~~ 115 (424)
T 2dh2_A 86 SLLQSAKKKSIRVILDLTPNYRG-ENS-------------------WF------------------------------ST 115 (424)
T ss_dssp HHHHHHHHTTCEEEEECCTTTTS-SST-------------------TC------------------------------SS
T ss_pred HHHHHHHHCCCEEEEEECCCcCC-Ccc-------------------cc------------------------------cc
Confidence 99999999999999999999998 442 32 01
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH--HHHHHH---HHhcCC-Ce-EEeeecCCCCCCCCCCCCCCCCCc
Q 014447 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP--SITKVY---MENTSP-DF-AVGEKWDSLSYGPDGKPDANQDGH 247 (424)
Q Consensus 175 ~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~--~~~~~~---~~~~~p-~~-~v~E~~~~~~~~~~~~~~~~~~~~ 247 (424)
++|+||++|++++++|++ +||||||+|++++++. +|++++ +++..| .+ +++|.+.+
T Consensus 116 q~~~Vr~~~~~~~~~Wl~-~gvDGfRlD~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~~~---------------- 178 (424)
T 2dh2_A 116 QVDTVATKVKDALEFWLQ-AGVDGFQVRDIENLKDASSFLAEWQNITKGFSEDRLLIAGTNSSD---------------- 178 (424)
T ss_dssp CHHHHHHHHHHHHHHHHH-HTCCEEEECCGGGSTTHHHHHHHHHHHHHHHCTTCEEEEECSCCC----------------
T ss_pred cCHHHHHHHHHHHHHHHH-cCCCEEEEeccccCCccHHHHHHHHHHHHHhCCCcEEEEEEecCC----------------
Confidence 358999999999999998 9999999999999875 477766 455666 45 55665532
Q ss_pred hhHHHHHHHhcCCceeeecccchH-------HHHHHhcchhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCC
Q 014447 248 RGALKDWVQAAGGAVAAFDFTTKG-------ILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPF 320 (424)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~df~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~ 320 (424)
...+..|... +....|+|.+.. .+...+. ....... .. + ...|+ |++|..+...
T Consensus 179 ~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~----~~~~~~~--~~---~----~~~~~---d~~r~~s~~~- 239 (424)
T 2dh2_A 179 LQQILSLLES--NKDLLLTSSYLSDSGSTGEHTKSLVT----QYLNATG--NR---W----CSWSL---SQARLLTSFL- 239 (424)
T ss_dssp HHHHHHHTTT--CTTCEEECSTTTTCSSCHHHHHHHHH----HHHHHHT--TC---C----CEECS---CSSCCGGGTS-
T ss_pred HHHHHHHhcc--ccccccchhhhcCCCCCHHHHHHHHH----HHHHhhc--cC---c----eeeee---cCcchhhhcC-
Confidence 3445556553 233456654321 1111111 1111110 00 0 12244 5677655544
Q ss_pred CchhHHHHHHHHHcCCCeeEEecCCCC-----------------Cc--------------------------chHHHHHH
Q 014447 321 PSDKVMLGYAYILTHPGTPCIFYDHFF-----------------DW--------------------------GLKEAISK 357 (424)
Q Consensus 321 ~~~~~~~a~a~~l~~pG~P~iyyG~~~-----------------~w--------------------------~l~~~~~~ 357 (424)
+.++.++|.++++++||+|+||||+|+ +| +++++||+
T Consensus 240 ~~~~~k~~~~lllt~pG~P~iY~GeE~G~~~~~~~~~~~~r~~m~W~~~~~~~~w~~~~~~~nv~~q~~~~~s~~~~yr~ 319 (424)
T 2dh2_A 240 PAQLLRLYQLMLFTLPGTPVFSYGDEIGLDAAALPGQPMEAPVMLWDESSFPDIPGAVSANMTVKGQSEDPGSLLSLFRR 319 (424)
T ss_dssp CHHHHHHHHHHHTTSSSEEEEETTGGGTCCGGGSSSCCSSSCCCCSSTTSCTTSTTCCCGGGSHHHHHTCTTSHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCeEEEeceecCCcCCCCCCCcccCCCCCCCccCCCCCCcccccccCHHhhhcCcHHHHHHHHH
Confidence 456789999999999999999999863 45 26899999
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCCEEEEEE----CCEEEEEECCCCC
Q 014447 358 LAAVRNRNGINTASRVNILASDADVYIAAI----GDRVIMKIGPKMD 400 (424)
Q Consensus 358 L~~lR~~~~al~~G~~~~~~~~~~v~~~~r----~~~~lv~ln~~~~ 400 (424)
|++||+++|+|+.|.++.+..++++++|.| +++++|++|.+..
T Consensus 320 Li~lRk~~~~l~~G~~~~~~~~~~v~a~~R~~~~~~~~lvv~N~s~~ 366 (424)
T 2dh2_A 320 LSDQRSKERSLLHGDFHAFSAGPGLFSYIRHWDQNERFLVVLNFGDV 366 (424)
T ss_dssp HHHHHHHCHHHHHCEEEEEBCCTTEEEEEEECTTSCEEEEEEECSSS
T ss_pred HHHHHhcChhhhcCceEEEecCCCEEEEEEEcCCCCEEEEEEECCCC
Confidence 999999999999999998888889999999 2588889988643
|
| >1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-52 Score=437.08 Aligned_cols=374 Identities=14% Similarity=0.164 Sum_probs=257.2
Q ss_pred CCCCCCceEEEeec-----CCCCCC------------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC-------CCC
Q 014447 18 LPFTSPALLFQGFN-----WESSNK------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-------PQG 73 (424)
Q Consensus 18 p~~~~~~v~~~~f~-----~ds~~~------------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~-------~~g 73 (424)
|.|.++.|||+++. |++.+. .+|||+|++++|+|||+||||+||||||++++. +||
T Consensus 78 ~~~~~~~~iYe~~~~~f~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~l~~lG~~~v~l~Pi~~~~~~~~~g~~~~g 157 (637)
T 1gjw_A 78 PDWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLLPFVKSLGADAIYLLPVSRMSDLFKKGDAPSP 157 (637)
T ss_dssp GGGGGGCCEEEECHHHHTCCCTTSSSCCCSBCTTSCBCSCCHHHHHHTHHHHHHHTCCEEEECCCEEECCSSCSSSSCCT
T ss_pred cCchhhCeEEEEeeccccCCCCCCCCccccccccchhccccHHHHHHHHHHHHHcCCCEEEeCCCeecccccccCCCCCc
Confidence 55777889999994 333222 249999999999999999999999999998652 469
Q ss_pred CCcccccCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCC--CCcceeecCCCCCCCC--CCC
Q 014447 74 YMPGRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKD--GRGIYCIFEGGTSDDR--LDW 141 (424)
Q Consensus 74 Y~~~d~~~id~~~~Gt--------~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~--~~~~~~~~~~~~~~~~--~~w 141 (424)
|++.||++++ ++||| .+|||+||++||++||+||||+|+||++.+++. ....|+.+........ +.|
T Consensus 158 Y~~~~~~~~~-~~~g~~~~~~~~~~~~~~~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~~~p~~f~~~~~~~~~~y~~p~ 236 (637)
T 1gjw_A 158 YSVKNPMELD-ERYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPPR 236 (637)
T ss_dssp TSEEEEEEEC-GGGSCGGGTTSCHHHHHHHHHHHHHHTTCEEEEEECTTEEETTCGGGTTCGGGSCCEEGGGSTTCCCCC
T ss_pred cCCCCcCCcC-cccCCCcccccchHHHHHHHHHHHHHCCCEEEEEECcCCCcCcchhhhhCCceeEecccccccccCCcc
Confidence 9999999999 99999 799999999999999999999999999988752 1223332211000000 000
Q ss_pred CCc--------------------------c------------------------------cccCCCccCCCCC--CCCCC
Q 014447 142 GPS--------------------------F------------------------------ICRGDKEYSDGQG--NDDTG 163 (424)
Q Consensus 142 ~~~--------------------------~------------------------------~~~~~~~~~~~~~--~~~~~ 163 (424)
.+. + .+.....|.++.. ...++
T Consensus 237 ~~~l~~~~~~~~~~~~~Y~~~~~~~~~~~f~~~~~~~~p~~w~~~~~~~g~~~~~~~~~fg~~~~~~~~dw~~~~~~~w~ 316 (637)
T 1gjw_A 237 AEELPFKVPDEDELEIIYNKENVKRHLKKFTLPPNLIDPQKWEKIKREEGNILELIVKEFGIITPPGFSDLINDPQPTWD 316 (637)
T ss_dssp CTTSCSBCCCHHHHHHHHTSHHHHHHHTTBCCCHHHHCHHHHHHHHTCSSCHHHHHHHHHSEECCCBCCSSBTCCSCCBT
T ss_pred ccccccCCcccccccccccChhhhhhhhhcccCccccChhhcccccccccchhhhhhhccccccCcccccccccCCCCcc
Confidence 000 0 0000011111000 00000
Q ss_pred -----------------------CCC-------CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHH
Q 014447 164 -----------------------EDF-------QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITK 213 (424)
Q Consensus 164 -----------------------~~~-------~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~ 213 (424)
..+ ..++++|++||+||++|++++++|++++||||||||+|++++.+||+
T Consensus 317 d~~~l~~~~~~p~~~~~~~~~~~~dy~~f~~~~~~~~~ln~~np~V~~~l~d~~~~W~~e~gvDGfRlD~a~~l~~~f~~ 396 (637)
T 1gjw_A 317 DVTFLRLYLDHPEASKRFLDPNQPPYVLYDVIKASKFPGKEPNRELWEYLAGVIPHYQKKYGIDGARLDMGHALPKELLD 396 (637)
T ss_dssp TEEECCCBSSCCGGGGGGSCTTCCCCCCHHHHCTTTSCCSSBCHHHHHHHTTHHHHHHHHHCCCEEEESSGGGSCHHHHH
T ss_pred cceeeecccCCchhhhhccccCCCcceecchhhhcccCcccCCHHHHHHHHHHHHHHhhhcCCceEEecchhhCCHHHHH
Confidence 000 12566799999999999999999999999999999999999999999
Q ss_pred HH---HHhcCC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcchhhhhhhhcC
Q 014447 214 VY---MENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNG 289 (424)
Q Consensus 214 ~~---~~~~~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~~~~ 289 (424)
++ +++.+| +++|||+|... ....|.. .+++..+++...... . ...+..+....
T Consensus 397 ~~~~~v~~~~p~~~ligE~~~~~-----------------~~~~~~~--~gfd~~~~~~~~~~~--~-~~~~~~~~~~l- 453 (637)
T 1gjw_A 397 LIIKNVKEYDPAFVMIAEELDME-----------------KDKASKE--AGYDVILGSSWYFAG--R-VEEIGKLPDIA- 453 (637)
T ss_dssp HHHHHHHHHCTTCEEEECCCCGG-----------------GHHHHHH--HTCSEECCCHHHHHT--C-TTTGGGHHHHH-
T ss_pred HHHHHHHHhCCCeEEEEeCCCCc-----------------chhhHhh--cCCceEeccchhccc--c-HHHHHHHHHhh-
Confidence 98 455677 77999999631 1123443 245666666533220 0 01111111111
Q ss_pred CCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCC-CeeEEecCCCCC--------------------
Q 014447 290 KPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHP-GTPCIFYDHFFD-------------------- 348 (424)
Q Consensus 290 ~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~p-G~P~iyyG~~~~-------------------- 348 (424)
...+...++|++|||+.|+.+... ..++.++|+++++++| |+|+||||+|++
T Consensus 454 ------~~~~~~~v~fl~nHD~~Rl~~~~~-~~~~~~~a~~l~l~~~~GiP~iy~GdE~G~~~p~~~g~~~d~~~R~~~~ 526 (637)
T 1gjw_A 454 ------EELVLPFLASVETPDTPRIATRKY-ASKMKKLAPFVTYFLPNSIPYVNTGQEIGEKQPMNLGLDTDPNLRKVLS 526 (637)
T ss_dssp ------HTCSSCEEECSCCTTSCCGGGSTT-HHHHHHHHHHHHHTSTTEEEEEETTGGGTCCSCSCCCSSCCGGGGGCSC
T ss_pred ------hccchHHhhcccCCCccccccccc-CcHHHHHHHHHHHHcCCCCcEEEeeeecCccCccccCCCCCcccccccc
Confidence 113566799999999999988764 3456788899999998 999999999752
Q ss_pred ------------------c-----chHHHHHHHHHHHHhcCCC-CCCCeEEEecCCCEEEEEE---CCEEEEEECCCCCC
Q 014447 349 ------------------W-----GLKEAISKLAAVRNRNGIN-TASRVNILASDADVYIAAI---GDRVIMKIGPKMDI 401 (424)
Q Consensus 349 ------------------w-----~l~~~~~~L~~lR~~~~al-~~G~~~~~~~~~~v~~~~r---~~~~lv~ln~~~~~ 401 (424)
| +++++||+|++||+++|+| +.|.+.++ .++.+++|.| +++++|++|.+...
T Consensus 527 ~~Dp~~~~~~~~~~~~l~W~~~~~~l~~~~~~Li~lRk~~paL~~~g~~~~~-~~~~vlaf~R~~~~~~~lvv~N~~~~~ 605 (637)
T 1gjw_A 527 PTDEFFGKLAFFDHYVLHWDSPDRGVLNFIKKLIKVRHEFLDFVLNGKFENL-TTKDLVMYSYEKNGQKIVIAANVGKEP 605 (637)
T ss_dssp TTSTTTTCCTTTSCCCCCTTSCCHHHHHHHHHHHHHHHHTHHHHHHSEEEEC-CCSSEEEEEEEETTEEEEEEEECSSSC
T ss_pred ccCccccccccccccccchhhcChHHHHHHHHHHHHHhhChhhhhCCcEEEe-cCCCEEEEEEEcCCceEEEEEeCCCCc
Confidence 4 3789999999999999999 88888854 4668999998 45888999986432
Q ss_pred CCcCC---------CCcEEEEeCCcEEEEec
Q 014447 402 GNLIP---------SDFKVAADGTDYAVWEK 423 (424)
Q Consensus 402 ~~~~~---------~~~~~~~~~~~~~~~~~ 423 (424)
..... .+-.+.+++.++.|...
T Consensus 606 ~~v~~~~~~~~~~~~~~~~~L~p~~~~vl~~ 636 (637)
T 1gjw_A 606 KEITGGRVWNGKWSDEEKVVLKPLEFALVVQ 636 (637)
T ss_dssp EEEEEEEEESSSEEEEEEEEECTTCEEEEEC
T ss_pred EEecCceEEeccccccCeeEECCCeEEEEEe
Confidence 11110 11244566667766543
|
| >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=430.32 Aligned_cols=349 Identities=17% Similarity=0.211 Sum_probs=239.0
Q ss_pred CCceEEEeecCCCCCC----C-CCcHHHHHhhh-hHHHHcCCCEEEeCCCCCCCC--CCCCCcccccCCCCCCCCCHHHH
Q 014447 22 SPALLFQGFNWESSNK----A-GGWYNSLKNSI-PDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLDASKYGSQADL 93 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~----~-~G~~~gi~~~L-~ylk~lGv~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~~Gt~edl 93 (424)
+..++||++. +++.+ + .|||+||+++| +|||+||||+||||||++++. +|||++.||++|+ |+|||.+||
T Consensus 130 ~~~~iYei~~-~~f~~~~~~g~~g~~~~i~~~ll~yl~~lGv~~i~l~Pi~~~~~~~~~GY~~~~y~~~~-~~~Gt~~~~ 207 (617)
T 1m7x_A 130 APISIYEVHL-GSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPT-RRFGTRDDF 207 (617)
T ss_dssp SCCEEEEECT-TSSCBCTTTCCBCCHHHHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEEEEC-GGGSCHHHH
T ss_pred CCcEEEEEEH-HHhcCCCCCCCccCHHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcccccCCccC-ccCCCHHHH
Confidence 4579999997 55433 3 68999999997 999999999999999999875 6999999999999 999999999
Q ss_pred HHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCC
Q 014447 94 KSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDID 173 (424)
Q Consensus 94 ~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln 173 (424)
|+||++||++||+||||+|+||++.+... |..|.+ + .+...... ..+.. ..| +.++||
T Consensus 208 ~~lv~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~d~-~-----~~y~~~~~--------~~g~~---~~w-~~~~ln 265 (617)
T 1m7x_A 208 RYFIDAAHAAGLNVILDWVPGHFPTDDFA----LAEFDG-T-----NLYEHSDP--------REGYH---QDW-NTLIYN 265 (617)
T ss_dssp HHHHHHHHHTTCEEEEEECTTSCCCSTTS----STTGGG-S-----CSSBCC-----------------------CCCBC
T ss_pred HHHHHHHHHCCCEEEEEEecCcccCccch----hhhcCC-C-----ccccccCc--------ccCCc---CCC-CCceec
Confidence 99999999999999999999999765321 111211 0 01000000 00000 011 235799
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC------------------------CHHHHHHH---HHhcCC-CeEE
Q 014447 174 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITKVY---MENTSP-DFAV 225 (424)
Q Consensus 174 ~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~------------------------~~~~~~~~---~~~~~p-~~~v 225 (424)
++||+||++|++++++|++++||||||+|+++++ +.+||+++ +++.+| +++|
T Consensus 266 ~~~p~v~~~i~~~~~~W~~~~gvDGfR~D~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~~i 345 (617)
T 1m7x_A 266 YGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTM 345 (617)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSCCCEEEECCSHHHHCC--------------CTTCCHHHHHHHHHHHHHHHHSSTTCEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHhCcCEEEEcchhhhhhccccccccccccccccccCCchHHHHHHHHHHHHHHHCCCeEEE
Confidence 9999999999999999999999999999998764 14688887 445567 8899
Q ss_pred eeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch-hh------hhhhhcCCCCCCcCcC
Q 014447 226 GEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE-LW------RLKDSNGKPPGFIGIL 298 (424)
Q Consensus 226 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~ 298 (424)
||.+.... ... ..+.....+++..+++.+.......+.++ .. .+.... ....
T Consensus 346 aE~~~~~~-------~~~--------~~~~~~g~gfd~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~ 404 (617)
T 1m7x_A 346 AEESTDFP-------GVS--------RPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGI------LYNY 404 (617)
T ss_dssp ECCSSCCT-------TTT--------BCTTTTBSCCSEEECHHHHHHHHHHHHSCGGGGGGCTHHHHGGG------TTTT
T ss_pred EeCCCCCc-------cce--------eeccCCCCccCcEeCCchHHHHHHHhccCccchhhhhccchhhh------hccc
Confidence 99886421 000 00001112455666666544444433322 11 111110 0001
Q ss_pred CCcceecccCCCCCcCc-----ccCCCC----chhHHHHHHHHHcCCCeeEEecCCCC------------Cc--------
Q 014447 299 PQNAVTFIDNHDTGSTQ-----RLWPFP----SDKVMLGYAYILTHPGTPCIFYDHFF------------DW-------- 349 (424)
Q Consensus 299 ~~~~~~f~~nHD~~r~~-----~~~~~~----~~~~~~a~a~~l~~pG~P~iyyG~~~------------~w-------- 349 (424)
+ ....+++|||+.|.. +.+..+ .+++++|++++|++||+|+||||+|+ +|
T Consensus 405 ~-~~fv~~~nHD~~~~g~~~~~~~~~g~~~~~~~~~r~a~~~~l~~pG~P~iy~G~E~G~~~~~~~~~~~~W~~~~~~~~ 483 (617)
T 1m7x_A 405 T-ENFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDASLDWHLLEGGDN 483 (617)
T ss_dssp T-SCEEEEECGGGSSTTSCCHHHHSCSSHHHHHHHHHHHHHHHHHSSSEEEEETTTTTTCSSCCCTTSCCCGGGGCSSCC
T ss_pred c-cceEEEeCCCCcccCccchhhhCCCcHHHHHHHHHHHHHHHHHCCCCcEEEcchhcCCCCCCCcccccChhhccccch
Confidence 1 113345999998642 222222 25789999999999999999999975 35
Q ss_pred ---chHHHHHHHHHHHHhcCCCCCCC-----eEEEe---cCCCEEEEEE----CCEEEEEECCCCCC------CCcCCCC
Q 014447 350 ---GLKEAISKLAAVRNRNGINTASR-----VNILA---SDADVYIAAI----GDRVIMKIGPKMDI------GNLIPSD 408 (424)
Q Consensus 350 ---~l~~~~~~L~~lR~~~~al~~G~-----~~~~~---~~~~v~~~~r----~~~~lv~ln~~~~~------~~~~~~~ 408 (424)
++++++|+|++||+++|+|..|. ++++. .++++++|.| +++++|++|.+... +-...+.
T Consensus 484 ~~~~l~~~~~~L~~lR~~~~al~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~lvv~N~s~~~~~~~~i~~p~~g~ 563 (617)
T 1m7x_A 484 WHHGVQRLVRDLNLTYRHHKAMHELDFDPYGFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRHDYRFGINQPGK 563 (617)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGTSCTTSGGGEEEEEEEETTTTEEEEEEECTTCCEEEEEEECSSCCEEEECCBCSSCSE
T ss_pred hhHHHHHHHHHHHHHHhhCHHhhcCCCCCCCeEEEeccCCCCeEEEEEEEcCCCCEEEEEECCCCCCccceEECCCCCCe
Confidence 27889999999999999998764 35554 4678999999 34799999976431 1111235
Q ss_pred cEEEEeCC
Q 014447 409 FKVAADGT 416 (424)
Q Consensus 409 ~~~~~~~~ 416 (424)
|+..++.+
T Consensus 564 ~~~~l~sd 571 (617)
T 1m7x_A 564 WREILNTD 571 (617)
T ss_dssp EEEEEETT
T ss_pred EEEEEeCc
Confidence 77777654
|
| >2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=445.54 Aligned_cols=360 Identities=19% Similarity=0.262 Sum_probs=243.3
Q ss_pred CCCCceEEEeecC---CCCCC---CCCcHHHHHhh-----------hhHHHHcCCCEEEeCCCCCCCC---------CCC
Q 014447 20 FTSPALLFQGFNW---ESSNK---AGGWYNSLKNS-----------IPDLSNAGITHVWLPPPSQSVA---------PQG 73 (424)
Q Consensus 20 ~~~~~v~~~~f~~---ds~~~---~~G~~~gi~~~-----------L~ylk~lGv~~I~l~Pi~~~~~---------~~g 73 (424)
|..+.||||++.- ++..+ ..|||.|++++ |+|||+||||+||||||++++. +||
T Consensus 429 ~~~~~vIYEihv~~F~~~~~~g~~~~Gt~~g~~e~~~~~l~Gi~~~LdyLk~LGvtaI~L~Pi~e~~~~de~~~~~~~wG 508 (921)
T 2wan_A 429 NPVDEVIYEAHVRDFSIDANSGMKNKGKYLAFTEHGTKGPDHVKTGIDSLKELGITTVQLQPVEEFNSIDETQPDTYNWG 508 (921)
T ss_dssp SGGGCCEEEECHHHHHCSTTSCCSSTTSGGGGGCCSCBCGGGCBCHHHHHHHHTCCEEEESCCEEESSSCTTSTTSCCCC
T ss_pred CchhcEEEEEEcCcccCCCCCCCCCCCCeeheeccccccccccchhhHHHHHcCCCEEEeCCccccCcccccccCcCCcC
Confidence 4466899999951 22222 23788887765 9999999999999999999763 699
Q ss_pred CCccccc------CCCCCCCCC--HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcc
Q 014447 74 YMPGRLY------DLDASKYGS--QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 145 (424)
Q Consensus 74 Y~~~d~~------~id~~~~Gt--~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 145 (424)
|++.||+ .+| | +|| ++|||+||++||++||+||||+|+||++.++. .| |.+.. +.|+...
T Consensus 509 Yd~~dy~ap~~~y~~d-p-~Gt~~~~dfk~LV~~aH~~GI~VILDvV~NHt~~~~~----~~--f~~~~----p~y~~~~ 576 (921)
T 2wan_A 509 YDPRNYNVPEGAYATT-P-EGTARITELKQLIQSLHQQRIGVNMDVVYNHTFDVMV----SD--FDKIV----PQYYYRT 576 (921)
T ss_dssp CSEEEEEEECGGGSSC-S-STTHHHHHHHHHHHHHHHTTCEEEEEECTTCCSCSSS----SH--HHHHS----TTTTBCB
T ss_pred CCCcCCCCCCcccccC-C-CCCccHHHHHHHHHHHHHcCCEEEEEEcccccccccc----cc--ccCCC----CCeEEEc
Confidence 9999997 555 5 666 79999999999999999999999999998873 11 11100 1111000
Q ss_pred cccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC-
Q 014447 146 ICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP- 221 (424)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p- 221 (424)
.....+.+ .+...++||++||+||++|++++++|++++||||||||++++++.++|+++ +++.+|
T Consensus 577 --~~~g~~~~---------~~g~~~dln~~~p~Vr~~i~d~l~~Wl~e~gVDGfR~Da~~~~~~~~~~~~~~~l~~~~p~ 645 (921)
T 2wan_A 577 --DSNGNYTN---------GSGCGNEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFDLMALLGKDTMAKISNELHAINPG 645 (921)
T ss_dssp --CTTSCBCC---------TTSSSCCBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGGCHHHHHHHHHHHHHHCTT
T ss_pred --CCCCcccC---------CCCcccccccCCHHHHHHHHHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHHHHHhCCc
Confidence 00111111 122346899999999999999999999889999999999999999999887 555677
Q ss_pred CeEEeeecCCC--CCCCCCCC-CCCCCCchhHHHHHHHhcCCc-eeeecccchHHHHHH---------hcch---hhhhh
Q 014447 222 DFAVGEKWDSL--SYGPDGKP-DANQDGHRGALKDWVQAAGGA-VAAFDFTTKGILQAA---------VQGE---LWRLK 285 (424)
Q Consensus 222 ~~~v~E~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~df~~~~~~~~~---------~~~~---~~~~~ 285 (424)
+++|||.|... .+...... .++ ..++ ...|++.++..+... ..|. ...+.
T Consensus 646 ~~ligE~w~~~~~~~~~~~~~~~~~--------------~~gf~~~~~nd~~rd~~~~~~f~~~~~~f~~g~~~~~~~l~ 711 (921)
T 2wan_A 646 IVLYGEPWTGGTSGLSSDQLVTKGQ--------------QKGLGIGVFNDNIRNGLDGNVFDKTAQGFATGDPNQVDVIK 711 (921)
T ss_dssp CEEEECSSCSSCCSSCTTTSCCTTT--------------TTTTTCEEECHHHHHHHHCCTTCTTCCCTTTTCSSCHHHHH
T ss_pred eEEEEecccCCCcccccchhccccc--------------cCCCCeEEechHHHHHHhcccccccchhhhcCChhHHHHHH
Confidence 78999999641 11110000 011 0112 344555544444321 0111 11122
Q ss_pred hhcCCCCCCcCcCCCcceecccCCCCCcCcccCC----C-C----chhHHHHHHHHHcCCCeeEEecCCCC---------
Q 014447 286 DSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP----F-P----SDKVMLGYAYILTHPGTPCIFYDHFF--------- 347 (424)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~----~-~----~~~~~~a~a~~l~~pG~P~iyyG~~~--------- 347 (424)
.............|...++|++|||+.|+...+. . . .+++++|++++|++||+|+||||+|+
T Consensus 712 ~~l~~~~~~~~~~p~~~vnfv~nHD~~rl~d~l~~~~~~~~~~~~~~~~rla~a~llt~pG~P~iy~GdE~g~~~~g~~n 791 (921)
T 2wan_A 712 NGVIGSIQDFTSAPSETINYVTSHDNMTLWDKILASNPSDTEADRIKMDELAHAVVFTSQGVPFMQGGEEMLRTKGGNDN 791 (921)
T ss_dssp HHHBTTTTTTCSSGGGEEECSCCSSSCCHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSBSEEEEETTGGGTCCCTTCSC
T ss_pred HHHhcchhhcccCcceeEEeeeccCCccHHHHhhhhCCCCCHHHHHHHHHHHHHHHHHCCCCcEEEcchhhcccCCCCCc
Confidence 1111000111112566799999999998755321 0 1 24789999999999999999999974
Q ss_pred -----------Cc-------chHHHHHHHHHHHHhcCCCCCCCe-------EEEecCCCEEEEEEC--------CEEEEE
Q 014447 348 -----------DW-------GLKEAISKLAAVRNRNGINTASRV-------NILASDADVYIAAIG--------DRVIMK 394 (424)
Q Consensus 348 -----------~w-------~l~~~~~~L~~lR~~~~al~~G~~-------~~~~~~~~v~~~~r~--------~~~lv~ 394 (424)
+| ++++++|+|++||+++|+|+.|.+ .++..++++++|.|. ++++|+
T Consensus 792 ~y~~~d~~~~~~W~~~~~~~~l~~~~~~Li~lRk~~paL~~g~~~~i~~~~~~~~~~~~vlaf~r~~~~~~~~~~~~lVv 871 (921)
T 2wan_A 792 SYNAGDSVNQFDWSRKAQFKDVFDYFSSMIHLRNQHPAFRMTTADQIKQNLTFLESPTNTVAFELKNYANHDTWKNIIVM 871 (921)
T ss_dssp CTTCCHHHHSCCTHHHHHTHHHHHHHHHHHHHHHHCGGGGCCSHHHHHHHEEECCCCTTCEEEEECSSGGGCSSSCEEEE
T ss_pred ccCCcccccccCCcccccchHHHHHHHHHHHHHhhChhhhCCchhhhccceEEecCCCcEEEEEEecCCCCCCCCeEEEE
Confidence 35 378999999999999999999875 355556789999993 379999
Q ss_pred ECCCCCCC--CcCCCCcEEEEeCC
Q 014447 395 IGPKMDIG--NLIPSDFKVAADGT 416 (424)
Q Consensus 395 ln~~~~~~--~~~~~~~~~~~~~~ 416 (424)
+|.+.... ..+.+.|++.+++.
T Consensus 872 ~N~~~~~~~~~Lp~g~w~~~~~~~ 895 (921)
T 2wan_A 872 YNPNKTSQTLNLPSGDWTIVGLGD 895 (921)
T ss_dssp EECSSSCEEEECCSSCEEEEEETT
T ss_pred EECCCCCEEEECCCCcEEEEEcCC
Confidence 99864311 11123466655543
|
| >2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-50 Score=425.03 Aligned_cols=347 Identities=18% Similarity=0.254 Sum_probs=232.9
Q ss_pred CCCCceEEEeecCCCCC--------CCCCcHHHHHhh--hhHHHHcCCCEEEeCCCCCCCC-----------CCCCCccc
Q 014447 20 FTSPALLFQGFNWESSN--------KAGGWYNSLKNS--IPDLSNAGITHVWLPPPSQSVA-----------PQGYMPGR 78 (424)
Q Consensus 20 ~~~~~v~~~~f~~ds~~--------~~~G~~~gi~~~--L~ylk~lGv~~I~l~Pi~~~~~-----------~~gY~~~d 78 (424)
|+++.|||+++. +++. ..+|||+||+++ |+|||+||||+||||||++++. +|||++.|
T Consensus 170 ~~~~~vIYeihv-~~f~~~~~~~~~~~~Gt~~gi~~~~~l~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~~wGY~~~~ 248 (718)
T 2vr5_A 170 PLKDTVIYEVHV-KGFTKLRLDLPENIRGTYEGLASEQMISYLKDLGITTVELMPVFHFIDQRFLTDKGLTNYWGYDPIN 248 (718)
T ss_dssp CTTSCCEEEECT-TTTTTTCTTSCTTSTTSHHHHTSHHHHHHHHHHTCCEEEECCCBCBCCCHHHHTTTCCCSSCCCBSC
T ss_pred ChhHCEEEEEEc-chhhcCCCCCCcccCcCHHHHhcchhhHHHHHcCCCeEEEeCCEecCccccccccCCcCccCcCccc
Confidence 446689999997 4433 248999999999 9999999999999999999763 58999999
Q ss_pred ccCCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCC
Q 014447 79 LYDLDASKYGS-------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDK 151 (424)
Q Consensus 79 ~~~id~~~~Gt-------~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 151 (424)
|++|| |+||| .+|||+||++||++||+||||+|+||++.+++.... ..|.+- ....|+... .+
T Consensus 249 y~~~~-~~yGt~~~~~~~~~dfk~lv~~~H~~Gi~VilDvV~NH~~~~~~~~~~--~~~~~~---~~~~yy~~~--~~-- 318 (718)
T 2vr5_A 249 FFSPE-CRYSSTGCLGGQVLSFKKMVNELHNAGIEVIIDVVYNHTAEGNHLGPT--LSFRGI---DNTAYYMLQ--PD-- 318 (718)
T ss_dssp SSSBC-GGGCSSCTTTHHHHHHHHHHHHHHTTTCEEEEEECCSCCSSCSTTSCC--SSHHHH---HSTTTBCBC--TT--
T ss_pred CcccC-hhhcCCCCCCchHHHHHHHHHHHHHCCCEEEEEeccCcccCccccCcc--ccccCC---CCCcceEeC--CC--
Confidence 99999 99999 799999999999999999999999999988752110 001100 001121100 00
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHH---------HHHHHHHh-cCC
Q 014447 152 EYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS---------ITKVYMEN-TSP 221 (424)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~---------~~~~~~~~-~~p 221 (424)
+...+ ..+...+++||++||+||++|++++++|++++||||||||++++++.+ +++.+.+. ..|
T Consensus 319 ----~~~~~--~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gvDGfR~D~~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 392 (718)
T 2vr5_A 319 ----NKRYY--LDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEMHVDGFRFDLAAALARELYSVNMLNTFFIALQQDPILS 392 (718)
T ss_dssp ----TSSSB--CCSSSSSCCBCTTSHHHHHHHHHHHHHHHHTTCCCEEEETTGGGGGBSSSSBCTTCHHHHHHHHCTTGG
T ss_pred ----CCcee--ecCCCccCeecCCCHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhhhccCCccchHHHHHHHHhCcccC
Confidence 00011 123445689999999999999999999999999999999999988654 45554321 334
Q ss_pred -CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch---hhhhhhhcCCCCCC---
Q 014447 222 -DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLKDSNGKPPGF--- 294 (424)
Q Consensus 222 -~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~---~~~~~~~~~~~~~~--- 294 (424)
+++|||.|...... |....+ ......++..++..+...+.|+ ...+..........
T Consensus 393 ~~~liaE~w~~~~~~------~~~~~f-----------~~~~~~wn~~~r~~~~~f~~g~~~~~~~~~~~l~~~~~~y~~ 455 (718)
T 2vr5_A 393 QVKLIAEPWDVGQGG------YQVGNF-----------PYQWAEWNGKYRDSIRRFWRGEALPYSEIANRLLGSPDIYLG 455 (718)
T ss_dssp GSEEEECCBCSSTTC------BCTTCS-----------CTTEEEECHHHHHHHHHHHHTCCEEHHHHHHHHTTCHHHHGG
T ss_pred CcEEEecccccCCCc------ccccCC-----------chhHHHHhHHHHHHHHHHHcCCcchHHHHHHHHhcchhhhcc
Confidence 77999998642200 100000 0011123333333444333222 11111111000000
Q ss_pred cCcCCCcceecccCCCCCcCcccCCC-------------------------------C-------chhHHHHHHHHHcCC
Q 014447 295 IGILPQNAVTFIDNHDTGSTQRLWPF-------------------------------P-------SDKVMLGYAYILTHP 336 (424)
Q Consensus 295 ~~~~~~~~~~f~~nHD~~r~~~~~~~-------------------------------~-------~~~~~~a~a~~l~~p 336 (424)
....|...++|++|||+.++...... . .+++++|++++|++|
T Consensus 456 ~~~~p~~~vnf~~~HD~~~l~dl~~~~~k~~~~~g~~~~dg~~~n~sw~~~~~g~~~~~~~~~~~~~~~r~a~a~ll~~~ 535 (718)
T 2vr5_A 456 NNKTPFASINYVTSHDGFTLEDLVSYNQKHNEANGFNNQDGMNENYSWNCGAEGPTNDQNVVICREKQKRNFMITLLVSQ 535 (718)
T ss_dssp GTCCGGGEEECSCCSSSCCHHHHSSCSSCCCGGGSSTTCCSCSCCCCCCSSSSSSCCCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred cCCCcceeeeeeecCCCCCHHHHHHHhhhhhhhcccccccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 01124567999999999753211100 0 236789999999999
Q ss_pred CeeEEecCCCC--------------------Cc-------chHHHHHHHHHHHHhcCCCCCCCe--------------EE
Q 014447 337 GTPCIFYDHFF--------------------DW-------GLKEAISKLAAVRNRNGINTASRV--------------NI 375 (424)
Q Consensus 337 G~P~iyyG~~~--------------------~w-------~l~~~~~~L~~lR~~~~al~~G~~--------------~~ 375 (424)
|+|+||||||+ +| +++++||+|++||+++|+|+.|.+ .+
T Consensus 536 G~P~iy~GdE~G~~~~G~~~~y~~~~~~~~~~W~~~~~~~~l~~~~~~Li~lRk~~pal~~~~~~~~~~~~~~~~~~~~~ 615 (718)
T 2vr5_A 536 GTPMILGGDELSRTQRGNNNAFCQDNEITWFDWNLDERKSKFLEFVKKMIQFYRAHPAFRRERYFQGKKLFGMPLKDVTF 615 (718)
T ss_dssp SEEEEETTTTTTCCCTTCSCCTTCCSTTTSCCCCCCHHHHHHHHHHHHHHHHHHHCGGGSCSSCCCSSBCTTCSSBSEEE
T ss_pred CCcEEEechhhcccCCCCCCcccCCccccccCccccccchHHHHHHHHHHHHHhhCcccccCcccccccccccCCCceEE
Confidence 99999999964 35 389999999999999999988764 23
Q ss_pred Eec------------CCCEEEEEEC----------------CEEEEEECCCCC
Q 014447 376 LAS------------DADVYIAAIG----------------DRVIMKIGPKMD 400 (424)
Q Consensus 376 ~~~------------~~~v~~~~r~----------------~~~lv~ln~~~~ 400 (424)
+.. +..+++|.|. ++++|++|.+.+
T Consensus 616 ~~~~g~~~~~~~~~~~~~~la~~r~~~~~~~~~~~~~~~~~~~ilv~~N~~~~ 668 (718)
T 2vr5_A 616 YTLEGREVDEKTWSSPTQLVIFVLEGSVMDEINMYGERIADDSFLIILNANPN 668 (718)
T ss_dssp ECSSSCBCCTTTTTSEESEEEEEEEGGGCCCBCTTSCBCCCCEEEEEEECCSS
T ss_pred ECCCCCcCCccccCCCCCEEEEEEeCCccccccccccccCCCeEEEEECCCCC
Confidence 321 2579999982 378999998643
|
| >3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-51 Score=427.09 Aligned_cols=330 Identities=19% Similarity=0.224 Sum_probs=236.6
Q ss_pred CceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHH
Q 014447 23 PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAF 100 (424)
Q Consensus 23 ~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~a 100 (424)
+.+||+++. .++.. +|||++++++|+|||+||||+||||||++.+ .+|||++.||++|| ++|||.+|||+||++|
T Consensus 136 ~~~iYe~~v-~~f~~-~G~~~~~~~~L~yl~~lGv~~v~l~Pi~~~~~~~~~GY~~~~~~~~~-~~~G~~~~~~~lv~~~ 212 (618)
T 3m07_A 136 QAVVYEMHT-GTFTP-EGTFRAAIAKLPYLAELGVTVIEVMPVAQFGGERGWGYDGVLLYAPH-SAYGTPDDFKAFIDAA 212 (618)
T ss_dssp GCCEEEECH-HHHSS-SCSHHHHHTTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEEC-TTTCCHHHHHHHHHHH
T ss_pred hCeEEEEeh-hhcCC-CCCHHHHHHHHHHHHHcCCCEEEeCChhccCCCCCCCcCcccccccC-cCcCCHHHHHHHHHHH
Confidence 369999986 33332 6999999999999999999999999997754 68999999999999 9999999999999999
Q ss_pred HHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 014447 101 RQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180 (424)
Q Consensus 101 H~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~ 180 (424)
|++||+||+|+|+||++.+++... .+. +.|+. ... .....++||+++|+||
T Consensus 213 H~~Gi~VilD~V~NH~~~~~~~~~----~~~-------~~~~~---~~~---------------~~~wg~~ln~~~p~V~ 263 (618)
T 3m07_A 213 HGYGLSVVLDIVLNHFGPEGNYLP----LLA-------PAFFH---KER---------------MTPWGNGIAYDVDAVR 263 (618)
T ss_dssp HHTTCEEEEEECCSCCCSSSCCHH----HHC-------GGGEE---EEE---------------EETTEEEECTTSHHHH
T ss_pred HHCCCEEEEeecCccCCCCccccc----ccC-------chhhc---CCC---------------CCCCCCCcCCCCHHHH
Confidence 999999999999999998764210 000 01110 000 0011246999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEecccCCC----CHHHHHHHH---HhcCC---CeEEeeecCCCCCCCCCCCCCCCCCchhH
Q 014447 181 KELSDWMNWLKTEIGFDGWRFDFVKGY----APSITKVYM---ENTSP---DFAVGEKWDSLSYGPDGKPDANQDGHRGA 250 (424)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~D~a~~~----~~~~~~~~~---~~~~p---~~~v~E~~~~~~~~~~~~~~~~~~~~~~~ 250 (424)
++|++++++|++++||||||+|+++++ +.+||+++. ++..| +++|||.+.+........ .+
T Consensus 264 ~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~f~~~l~~~v~~~~p~~~~~li~E~~~~~~~~l~~~-~~-------- 334 (618)
T 3m07_A 264 RYIIEAPLYWLTEYHLDGLRFDAIDQIEDSSARHVLVEIAQRIREDITDRPIHLTTEDSRNIISLHPRD-QD-------- 334 (618)
T ss_dssp HHHHHHHHHHHHHTTCSEEEETTGGGCCCCSSSCHHHHHHHHHHHHCCSSCCEEEECCSSCCCTTSCCC-TT--------
T ss_pred HHHHHHHHHHHHHhCccEEEecchhhhcccchHHHHHHHHHHHHHhCCCCCEEEEEEecCCchhhhccc-cc--------
Confidence 999999999997799999999999999 889999984 34433 789999987643110000 00
Q ss_pred HHHHHHhcCCceeeecccchHHHHHHhcchh------------hh----hhhhcCC----------CCCC--cCcCCCcc
Q 014447 251 LKDWVQAAGGAVAAFDFTTKGILQAAVQGEL------------WR----LKDSNGK----------PPGF--IGILPQNA 302 (424)
Q Consensus 251 ~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~------------~~----~~~~~~~----------~~~~--~~~~~~~~ 302 (424)
...++++..+++.++..+...+.|+. .. +...+.. ..+. ....+...
T Consensus 335 -----g~~g~~d~~~n~~~~~~l~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~f~~~g~~s~~~~~~~G~~~~~~~~~~~ 409 (618)
T 3m07_A 335 -----GNAPLFTAEWNDDFHNAVHVFATGETQAYYNDFADAPEKHLARALAEGFAYQGEISPQTGEPRGVKSTGQPPVAF 409 (618)
T ss_dssp -----SCCSSCSEEECHHHHHHHHHHHHCCCSGGGGGGCSCHHHHHHHHHHHSCSCSSCBCTTTSSBCCCCCTTSCGGGE
T ss_pred -----CCccccceeechhHHHHHHHHhcCCccchhhhcccCcHHHHHHHHHHhhccCcccccccccccCCccccCChhhh
Confidence 00011444455544444443332211 00 1111100 0000 00123567
Q ss_pred eecccCCCC-------CcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC----------------------------
Q 014447 303 VTFIDNHDT-------GSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF---------------------------- 347 (424)
Q Consensus 303 ~~f~~nHD~-------~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~---------------------------- 347 (424)
++|++|||+ +|..+.. +.+++++|++++|++||+|+||||+|+
T Consensus 410 v~fl~NHD~~gnr~~G~Rl~~~~--~~~~~~~a~alllt~PG~P~iy~G~E~G~~~pf~~f~d~~~~l~~~vr~gr~~e~ 487 (618)
T 3m07_A 410 VDFIQNHDQVGNRAQGDRLITLA--GAERTKVLLATLLLSPHIPLLFMGEEYGESRPFLFFTDFHGDLARAVREGRAKEF 487 (618)
T ss_dssp EECSCCHHHHHTSTTCCCHHHHH--CHHHHHHHHHHHHHSSSEEEEETTGGGTCCSCCCCCCCCCHHHHHHHHHHHHHTT
T ss_pred eeeecccccccccccccchhhhc--CHHHHHHHHHHHHhCCCcCEEecchhhCCCCCccccccCchhhhhhhhccchhhh
Confidence 999999999 6665543 357899999999999999999999862
Q ss_pred ----------------------Cc---------chHHHHHHHHHHHHhc--CCCC---CCCeEEEecCCCEEEEEE---C
Q 014447 348 ----------------------DW---------GLKEAISKLAAVRNRN--GINT---ASRVNILASDADVYIAAI---G 388 (424)
Q Consensus 348 ----------------------~w---------~l~~~~~~L~~lR~~~--~al~---~G~~~~~~~~~~v~~~~r---~ 388 (424)
+| +++++||+|++||+++ |+|+ .|.+..+..++++++|.| +
T Consensus 488 ~~f~~~~~~dP~~~~~~~~~~l~W~~~~~~~~~~ll~~~r~Li~lRr~~~~PaL~~~~~~~~~~~~~~~~vl~~~R~~~~ 567 (618)
T 3m07_A 488 ADHAGENVPDPNAPETFQRSKLNWKQQHSEEGKAWLAFTRELLLLRQKHIVPLLSAARESSGTVLQTAPGFIAVSWRFPG 567 (618)
T ss_dssp GGGTTCCCCCTTSHHHHHTTSCCHHHHHSHHHHHHHHHHHHHHHHHHHHTHHHHTTCCSCCEEEEEEETTEEEEEEEETT
T ss_pred ccCCcccCCCCCChhhcccccCChhhhcccccHHHHHHHHHHHHHHHhccCcccccCCCCceEEEecCCCEEEEEEEeCC
Confidence 24 3789999999999999 7787 445777767889999998 4
Q ss_pred CEEEEEECCCCC
Q 014447 389 DRVIMKIGPKMD 400 (424)
Q Consensus 389 ~~~lv~ln~~~~ 400 (424)
++++|++|.+.+
T Consensus 568 ~~llvv~Nls~~ 579 (618)
T 3m07_A 568 GTLSLALNISAT 579 (618)
T ss_dssp EEEEEEEECSSS
T ss_pred CEEEEEEECCCC
Confidence 578888887654
|
| >4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-50 Score=411.79 Aligned_cols=350 Identities=18% Similarity=0.244 Sum_probs=239.3
Q ss_pred cCCCC-CCceEEEeecCCCCCCCCCcHHHHHhhh-hHHHHcCCCEEEeCCCCCCCC--------CCCCCcccccCCCCCC
Q 014447 17 FLPFT-SPALLFQGFNWESSNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSVA--------PQGYMPGRLYDLDASK 86 (424)
Q Consensus 17 ~p~~~-~~~v~~~~f~~ds~~~~~G~~~gi~~~L-~ylk~lGv~~I~l~Pi~~~~~--------~~gY~~~d~~~id~~~ 86 (424)
.|+.. +++||+|.|.|. ++.|++++ +||++||||+||||||.|+.. ++||++.|| +|+ |+
T Consensus 3 ~p~~~~g~~~i~~~f~W~--------w~~ia~e~~~yl~~~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~dy-~i~-~~ 72 (496)
T 4gqr_A 3 SPNTQQGRTSIVHLFEWR--------WVDIALECERYLAPKGFGGVQVSPPNENVAIYNPFRPWWERYQPVSY-KLC-TR 72 (496)
T ss_dssp SCCCCTTCCEEEEETTCC--------HHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCS-CSC-BT
T ss_pred CCCCCCCCcEEEEecCCC--------HHHHHHHHHHHHHHhCCCEEEeCccccCccCCCCCCCcccccCccCc-eeC-CC
Confidence 36665 678999999994 99998776 799999999999999999631 369999995 799 99
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCc-----ceeecCCCCCCCCCCCCCc-cc---cc----CCCcc
Q 014447 87 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG-----IYCIFEGGTSDDRLDWGPS-FI---CR----GDKEY 153 (424)
Q Consensus 87 ~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~-----~~~~~~~~~~~~~~~w~~~-~~---~~----~~~~~ 153 (424)
|||++|||+||++||++|||||+|+|+||++.+++.... .++.... .......|... +. +. ....|
T Consensus 73 ~Gt~~df~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (496)
T 4gqr_A 73 SGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGS-RDFPAVPYSGWDFNDGKCKTGSGDIENY 151 (496)
T ss_dssp TBCHHHHHHHHHHHHHTTCEEEEEECCSEEEETTSCSBSCBTTCCCBBTTT-TBBTTTTBCGGGBSTTTCCSSSSBCCCT
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEccCcCCCccccccccCcCCccccccc-ccCCCCCCCccccCCCcccCCCCccccc
Confidence 999999999999999999999999999999988753211 1110000 00000000000 00 00 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcC----------C-C
Q 014447 154 SDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTS----------P-D 222 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~----------p-~ 222 (424)
.+ .....++++.++||||++||+||++|++++++|++ +||||||+|+|++++.++|+.+.+..+ + .
T Consensus 152 ~~--~~~~~~~~~~~~~Dln~~n~~V~~~l~~~~~~~~~-~gvDGfR~D~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (496)
T 4gqr_A 152 ND--ATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLID-IGVAGFRLDASKHMWPGDIKAILDKLHNLNSNWFPAGSKP 228 (496)
T ss_dssp TC--HHHHHHSBGGGEEEBCTTSHHHHHHHHHHHHHHHH-HTCCEEEETTGGGSCHHHHHHHHTTCCCCCTTTSCTTCCC
T ss_pred CC--cceeEeeecCCCCccccCCHHHHHHHHHHHHHHHh-cCcceeecccccccchHHHHHHHHHHHhhccchhcccCcc
Confidence 00 01112345578999999999999999999999997 999999999999999999999965542 2 4
Q ss_pred eEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch-hhhhhhhcCCCCCCcCcCCCc
Q 014447 223 FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE-LWRLKDSNGKPPGFIGILPQN 301 (424)
Q Consensus 223 ~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 301 (424)
++++|++.... +.. ..+ ...+....++|.+...+..++... ...+..............+..
T Consensus 229 ~~~~e~~~~~~-------~~~--------~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (496)
T 4gqr_A 229 FIYQEVIDLGG-------EPI--------KSS--DYFGNGRVTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGFVPSDR 291 (496)
T ss_dssp EEEECCCCCSS-------SSC--------CGG--GGTTTSEEECHHHHHHHHHHHTTGGGCCGGGGGGTTGGGTCCCGGG
T ss_pred eEEeeeeccCc-------ccc--------chh--hhcCCCcccchhhHHHHHHHHhhccchhHHHHHhhhhhhccCCccc
Confidence 67888875422 000 001 112355678888777777766332 111111111111111223557
Q ss_pred ceecccCCCCCcCcccCCC------CchhHHHHHHHHHcCC-CeeEEecCCCCC--------------------------
Q 014447 302 AVTFIDNHDTGSTQRLWPF------PSDKVMLGYAYILTHP-GTPCIFYDHFFD-------------------------- 348 (424)
Q Consensus 302 ~~~f~~nHD~~r~~~~~~~------~~~~~~~a~a~~l~~p-G~P~iyyG~~~~-------------------------- 348 (424)
+++|++|||++|..+.... +.++.++|+++++++| |+|+||+|.+.+
T Consensus 292 ~v~Fv~NHD~~R~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~G~P~i~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (496)
T 4gqr_A 292 ALVFVDNHDNQRGHGAGGASILTFWDARLYKMAVGFMLAHPYGFTRVMSSYRWPRQFQNGNDVNDWVGPPNNNGVIKEVT 371 (496)
T ss_dssp EEECSCCTTGGGSSSTTGGGCCCGGGHHHHHHHHHHHHHSCSSEEEEEECBCCCCCEETTEETTTTCCSSEETTEECCCC
T ss_pred eeeecccccccccccccCCccccccCHHHHHHHHHHHHhccCCccceeecccccccccCCCCCCccccccCCCccccccc
Confidence 7999999999998765321 2345678888888888 999998775321
Q ss_pred ----------c---chHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEECCEEEEEECCCC
Q 014447 349 ----------W---GLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKM 399 (424)
Q Consensus 349 ----------w---~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r~~~~lv~ln~~~ 399 (424)
| ..+..|++|+++|+.. ...+...+...+++++||.|+++++|++|++.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~i~~l~~~r~~~--~g~~~~~~~~~~~~~iaF~Rg~~~~V~~N~~~ 433 (496)
T 4gqr_A 372 INPDTTCGNDWVCEHRWRQIRNMVIFRNVV--DGQPFTNWYDNGSNQVAFGRGNRGFIVFNNDD 433 (496)
T ss_dssp BCTTSCBCTTBCCGGGSHHHHHHHHHHHHT--TTCCEEEEEECSSSEEEEEETTTEEEEEECSS
T ss_pred cCccccccchhhHHHHHHHHHHHHHHHhhc--cCCceEEEEeCCCCEEEEEeCCcEEEEEECCC
Confidence 1 1467899999999873 22333455667789999999999999999864
|
| >3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-50 Score=420.07 Aligned_cols=334 Identities=18% Similarity=0.202 Sum_probs=233.5
Q ss_pred CceEEEeecCCCCCCCCCcHHHHHhhh-hHHHHcCCCEEEeCCCCCCCC--CCCCCcccccCCCCCCCCCHHHHHHHHHH
Q 014447 23 PALLFQGFNWESSNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (424)
Q Consensus 23 ~~v~~~~f~~ds~~~~~G~~~gi~~~L-~ylk~lGv~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~~Gt~edl~~Lv~~ 99 (424)
..++|+++. .++.+ +|||++|+++| +|||+||||+||||||++++. +|||++.||++|+ ++|||.+||++||++
T Consensus 245 ~~~IYE~h~-~s~~~-~G~~~~l~~~l~~yLk~lG~t~I~L~Pi~e~~~~~~wGY~~~~y~a~~-~~yGt~~dfk~lV~~ 321 (722)
T 3k1d_A 245 AMSTYEVHL-GSWRP-GLSYRQLARELTDYIVDQGFTHVELLPVAEHPFAGSWGYQVTSYYAPT-SRFGTPDDFRALVDA 321 (722)
T ss_dssp CCEEEEECT-TTSST-TCCHHHHHHHHHHHHHHHTCSEEEESCCEECSCGGGTTCSCSEEEEEC-GGGCCHHHHHHHHHH
T ss_pred CeEEEEEeh-hhccC-CCCHHHHHHHHHHHHHHcCCCeEEECCcccCCCCCCCCCCcccCcCcc-ccCCCHHHHHHHHHH
Confidence 359999997 55554 59999999998 999999999999999999874 6999999999999 999999999999999
Q ss_pred HHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 014447 100 FRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRV 179 (424)
Q Consensus 100 aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v 179 (424)
||++||+||||+|+||++.+... +..|. +++ +... . +.. ......| +.++||+++|+|
T Consensus 322 ~H~~GI~VilD~V~NH~~~~~~~----~~~fd-g~~-----~y~~---~------d~~--~~~~~~W-g~~~ln~~~p~V 379 (722)
T 3k1d_A 322 LHQAGIGVIVDWVPAHFPKDAWA----LGRFD-GTP-----LYEH---S------DPK--RGEQLDW-GTYVFDFGRPEV 379 (722)
T ss_dssp HHHTTCEEEEEECTTCCCCCTTT----TTTTT-SSC-----CSBC---C------CCC--SSSTTCC-CCCCBCTTSHHH
T ss_pred HHHcCCEEEEEEEeeccCCccch----hhcCC-CCc-----cccc---C------Ccc--cCccCCC-CCeeecCCCHHH
Confidence 99999999999999999865311 00011 100 0000 0 000 0001112 236799999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEecccCCC------------------------CHHHHHHH---HHhcCC-CeEEeeecCC
Q 014447 180 QKELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITKVY---MENTSP-DFAVGEKWDS 231 (424)
Q Consensus 180 ~~~l~~~~~~w~~~~gvDGfR~D~a~~~------------------------~~~~~~~~---~~~~~p-~~~v~E~~~~ 231 (424)
|++|++++++|++++||||||+|++++| +.+||+++ +++.+| +++|||.+.+
T Consensus 380 r~~l~~~~~~Wl~~~gvDGfR~Dav~~mly~d~~r~~g~w~~n~~gg~~n~~~~~fl~~l~~~v~~~~P~~~~iaE~~t~ 459 (722)
T 3k1d_A 380 RNFLVANALYWLQEFHIDGLRVDAVASMLYLDYSRPEGGWTPNVHGGRENLEAVQFLQEMNATAHKVAPGIVTIAEESTP 459 (722)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCTHHHHBCCCCCCSSCCSCCCSSCSBCHHHHHHHHHHHHHHHHHSTTCEEEECCCSS
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcchhhhhhccccccccccccccCCCccChHHHHHHHHHHHHHHHhCCCeEEEEEecCC
Confidence 9999999999999999999999998765 35788888 455677 8899998753
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh-cchhhhhh--hhcCCCCCCcCcCCCcceecccC
Q 014447 232 LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLK--DSNGKPPGFIGILPQNAVTFIDN 308 (424)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~n 308 (424)
.+ .... .......+++..+++.........+ .....+.. .... ..+... ....+++++|
T Consensus 460 ~p-------~v~~--------~~~~gGlGfd~~wn~~~~~d~l~y~~~~~~~r~~~~~~lt--~~~~ya-~~e~f~l~~s 521 (722)
T 3k1d_A 460 WS-------GVTR--------PTNIGGLGFSMKWNMGWMHDTLDYVSRDPVYRSYHHHEMT--FSMLYA-FSENYVLPLS 521 (722)
T ss_dssp CC-------CTTS--------CGGGTCCCCSEEECHHHHHHHHHHHHSCGGGGGGGHHHHH--GGGGTT-TSSCEEEEEC
T ss_pred Cc-------cccc--------ccccCCCccccccccchHHHHHHHHhcCchhhhhhhhccc--hhhhhh-cccceecccC
Confidence 21 0000 0011123455555555544333333 22221110 0000 000000 1122677899
Q ss_pred CCCC-----cCcccCCCC----chhHHHHHHHHHcCCCeeEEecCCCC------------Cc----------chHHHHHH
Q 014447 309 HDTG-----STQRLWPFP----SDKVMLGYAYILTHPGTPCIFYDHFF------------DW----------GLKEAISK 357 (424)
Q Consensus 309 HD~~-----r~~~~~~~~----~~~~~~a~a~~l~~pG~P~iyyG~~~------------~w----------~l~~~~~~ 357 (424)
||+. |+...+..+ .+++++++++|+++||+|+||||+|+ +| ++.+++|+
T Consensus 522 HD~~~~Gk~~ll~~~~gd~~~~~a~lr~~~a~~lt~PG~plif~G~E~G~~~e~~~~~~l~W~~~~~~~~~~~l~~~~~~ 601 (722)
T 3k1d_A 522 HDEVVHGKGTLWGRMPGNNHVKAAGLRSLLAYQWAHPGKQLLFMGQEFGQRAEWSEQRGLDWFQLDENGFSNGIQRLVRD 601 (722)
T ss_dssp GGGSSTTSCCHHHHSCSSHHHHHHHHHHHHHHHHHSSSEEEEETTGGGTCCSCCCTTTCCCGGGGGSSSSHHHHHHHHHH
T ss_pred cchhccCccchhhhCCCcHHHHHHHHHHHHHHHHhCCCeeEEecccccccccccccccccCcccccCccccHHHHHHHHH
Confidence 9998 554444433 34788999999999999999999874 34 26889999
Q ss_pred HHHHHHhcCCCCC-----CCeEEEec---CCCEEEEEE----CCEEEEEECCCC
Q 014447 358 LAAVRNRNGINTA-----SRVNILAS---DADVYIAAI----GDRVIMKIGPKM 399 (424)
Q Consensus 358 L~~lR~~~~al~~-----G~~~~~~~---~~~v~~~~r----~~~~lv~ln~~~ 399 (424)
|++||+++|+|.. +.++++.. ++++++|.| ++.++|++|.+.
T Consensus 602 Ln~lR~~~paL~~~d~~~~gf~wi~~~d~~~~viaf~R~~~~~~~llvv~N~s~ 655 (722)
T 3k1d_A 602 INDIYRCHPALWSLDTTPEGYSWIDANDSANNVLSFMRYGSDGSVLACVFNFAG 655 (722)
T ss_dssp HHHHHHHCGGGTTTTTSGGGEEEEEEEETTTTEEEEEEECTTSCEEEEEEECSS
T ss_pred HHHHHHhChhhhccccCCCceEEEEccCCCCCEEEEEEEcCCCCEEEEEEeCCC
Confidence 9999999999964 45677653 679999998 247788888843
|
| >3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-51 Score=420.95 Aligned_cols=329 Identities=16% Similarity=0.154 Sum_probs=236.5
Q ss_pred CceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHH
Q 014447 23 PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAF 100 (424)
Q Consensus 23 ~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~a 100 (424)
..+||+++. .++.. +|||++++++|+|||+||||+||||||++.+ .+|||++.||++|| ++|||.+|||+||++|
T Consensus 101 ~~~iYe~~~-~~f~~-~G~~~~~~~~l~~l~~lG~~~v~l~Pi~~~~~~~~~GY~~~~~~~~~-~~~Gt~~d~~~lv~~~ 177 (558)
T 3vgf_A 101 DLIIYEIHV-GTFTP-EGTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQ-NSYGGPEGFRKLVDEA 177 (558)
T ss_dssp GCCEEEECH-HHHSS-SCSHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEEC-GGGTHHHHHHHHHHHH
T ss_pred ccEEEEEeH-HHhCC-CCCHHHHHHHHHHHHHcCCcEEEECCcccCCCCCCcCcccccccccc-cccCCHHHHHHHHHHH
Confidence 459999996 44332 5899999999999999999999999998865 47899999999999 9999999999999999
Q ss_pred HHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCC-CCCHHH
Q 014447 101 RQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDID-HLNPRV 179 (424)
Q Consensus 101 H~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln-~~np~v 179 (424)
|++||+||+|+|+||++.+++..... ..|+...+. ..| ....+++ .++|+|
T Consensus 178 h~~Gi~VilD~V~NH~~~~~~~~~~~------------~~~~~~~~~---~~~-------------g~~~n~~~~~~~~v 229 (558)
T 3vgf_A 178 HKKGLGVILDVVYNHVGPEGNYMVKL------------GPYFSQKYK---TPW-------------GLTFNFDDAESDEV 229 (558)
T ss_dssp HHTTCEEEEEECCSCCCSSSCCGGGT------------SCCEEEEEE---ETT-------------EEEECSSSTTHHHH
T ss_pred HHcCCEEEEEEeeccccCCCCccccc------------CCccCCCCC---CCC-------------CCcccCCCCCCHHH
Confidence 99999999999999999876521100 011100000 000 1111122 358999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEecccCCC----CHHHHHHHHHhcCC--CeEEeeecCCCCCCCCCCCCCCCCCchhHHHH
Q 014447 180 QKELSDWMNWLKTEIGFDGWRFDFVKGY----APSITKVYMENTSP--DFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 253 (424)
Q Consensus 180 ~~~l~~~~~~w~~~~gvDGfR~D~a~~~----~~~~~~~~~~~~~p--~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (424)
|++|++++++|++++||||||+|+++++ +.+||+++.+..+. .++|||.+.+.. ..+..
T Consensus 230 ~~~l~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~f~~~l~~~~~~~~~~~iaE~~~~~~---------------~~~~~ 294 (558)
T 3vgf_A 230 RKFILENVEYWIKEYNVDGFRLSAVHAIIDTSPKHILEEIADVVHKYNRIVIAESDLNDP---------------RVVNP 294 (558)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEESCGGGCCCCSSSCHHHHHHHHHHHTTCEEEEECSSCCG---------------GGTSC
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecccccccccHHHHHHHHHHHHhhcCEEEEEecCCCCc---------------ceecc
Confidence 9999999999998899999999999999 67899998544322 779999986421 11111
Q ss_pred HHHhcCCceeeecccchHHHHHHhcchh----------hhhhhh----cCCC------------CCCcCcCCCcceeccc
Q 014447 254 WVQAAGGAVAAFDFTTKGILQAAVQGEL----------WRLKDS----NGKP------------PGFIGILPQNAVTFID 307 (424)
Q Consensus 254 ~~~~~~~~~~~~df~~~~~~~~~~~~~~----------~~~~~~----~~~~------------~~~~~~~~~~~~~f~~ 307 (424)
+.....+++..+++.++..+..++.++. ..+... .... .......|.++++|++
T Consensus 295 ~~~~g~g~d~~~~~~~~~~l~~~~~~e~~~~~~d~~~~~~l~~~l~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~v~Fv~ 374 (558)
T 3vgf_A 295 KEKCGYNIDAQWVDDFHHSIHAYLTGERQGYYTDFGNLDDIVKSYKDVFVYDGKYSNFRRKTHGEPVGELDGCNFVVYIQ 374 (558)
T ss_dssp GGGTCCCCSEEECHHHHHHHHHHHHCCCSGGGGGCCCHHHHHHHHHHSCSCSSEEETTTTEEECCCCTTCCGGGEEECSC
T ss_pred ccCCCCceeeEEcHHHHHHHHHHhcCCccccccccccHHHHHHHHHhhhccccccchhhhcccCCCcccCChHHheeeee
Confidence 1122235666777777777766654321 111111 0000 0000113567799999
Q ss_pred CCCC--CcCcc--c-CCCCchhHHHHHHHHHcCCCeeEEecCCCCC----------------------------------
Q 014447 308 NHDT--GSTQR--L-WPFPSDKVMLGYAYILTHPGTPCIFYDHFFD---------------------------------- 348 (424)
Q Consensus 308 nHD~--~r~~~--~-~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~~---------------------------------- 348 (424)
|||+ .|... . ...+.++.++|++++|++||+|+||||+|++
T Consensus 375 NHD~~gnr~~g~r~~~~~~~~~~~la~al~lt~pG~P~Iy~G~E~g~~~p~~~f~d~~d~~l~~~v~~Gr~~ef~~~~dp 454 (558)
T 3vgf_A 375 NHDQVGNRGKGERIIKLVDRESYKIAAALYLLSPYIPMIFMGEEYGEENPFYFFSDFSDSKLIQGVREGRKKENGQDTDP 454 (558)
T ss_dssp CHHHHHTSTTCCCGGGTSCHHHHHHHHHHHHTSSSEEEEETTGGGTCCSCCCCCCCCCSHHHHHHHHHHHHHHHCCCSCT
T ss_pred ccchhccccccccccccCCHHHHHHHHHHHHhCCCcceeecChhhcCCCCCcccccCCCHHHHHHHhhhhhccccCCCCC
Confidence 9998 55421 1 1135678999999999999999999998642
Q ss_pred ------------c----chHHHHHHHHHHHHhcCCCCCCCeE-EEecCCCEEEEEECCEEEEEECCCCC
Q 014447 349 ------------W----GLKEAISKLAAVRNRNGINTASRVN-ILASDADVYIAAIGDRVIMKIGPKMD 400 (424)
Q Consensus 349 ------------w----~l~~~~~~L~~lR~~~~al~~G~~~-~~~~~~~v~~~~r~~~~lv~ln~~~~ 400 (424)
| +++++||+|++||+++| ..|... ....++.+++|.| ++++|++|.+..
T Consensus 455 ~~~~~f~~~~~~w~~~~~l~~~~r~L~~lR~~~~--~~g~~~~~~~~~~~vla~~R-~~vlVv~N~s~~ 520 (558)
T 3vgf_A 455 QDESTFNASKLSWKIDEEIFSFYKILIKMRKELS--IACDRRVNVVNGENWLIIKG-REYFSLYVFSKS 520 (558)
T ss_dssp TSHHHHHHTSCCCCCCHHHHHHHHHHHHHHHHTT--CTTCCCCEEEECSSEEEEEC-SSCEEEEESSCE
T ss_pred CchhhhhccCCChhHHHHHHHHHHHHHHHHhhCc--cCCCceeEEcCCCeEEEEEc-CeEEEEEECCCC
Confidence 4 48999999999999999 556553 3456788999999 899999998653
|
| >2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-51 Score=431.20 Aligned_cols=346 Identities=19% Similarity=0.249 Sum_probs=232.3
Q ss_pred CCCCceEEEeecC---CCCCC----CCCcHHHHHhh--hhHHHHcCCCEEEeCCCCCCCC-----------CCCCCcccc
Q 014447 20 FTSPALLFQGFNW---ESSNK----AGGWYNSLKNS--IPDLSNAGITHVWLPPPSQSVA-----------PQGYMPGRL 79 (424)
Q Consensus 20 ~~~~~v~~~~f~~---ds~~~----~~G~~~gi~~~--L~ylk~lGv~~I~l~Pi~~~~~-----------~~gY~~~d~ 79 (424)
|+++.||||++.- ++.++ ++|||+||+++ |+|||+||||+||||||++++. +|||++.||
T Consensus 147 ~~~~~vIYei~v~~F~~~~~~~~~~~~G~~~gi~~~~~l~yL~~LGvt~i~L~Pi~~~~~~~~~~~~g~~~~wGY~~~~y 226 (657)
T 2wsk_A 147 PWGSTIIYEAHVKGLTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAM 226 (657)
T ss_dssp CGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHTSHHHHHHHHHHTCCEEEESCCEEECCCHHHHTTTCCCSSCCCEEEE
T ss_pred CchhcEEEEEEcceeeccCCCCCccCCcCHHHHhcccchHHHHHcCCCEEEECCccccCccccccccccccccCcCcccC
Confidence 4566899999851 22222 58999999999 9999999999999999999764 689999999
Q ss_pred cCCCCCCCC-----CHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccC
Q 014447 80 YDLDASKYG-----SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154 (424)
Q Consensus 80 ~~id~~~~G-----t~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 154 (424)
++|+ |+|| |++|||+||++||++||+||||+|+||++.+++.... ..+.+.. ...|+ ....
T Consensus 227 ~~~~-~~~G~~p~~~~~d~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~--~~~~~~~---~~~~y---~~~~----- 292 (657)
T 2wsk_A 227 FALH-PAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPL--FSLRGID---NRSYY---WIRE----- 292 (657)
T ss_dssp EEEC-GGGCSSGGGHHHHHHHHHHHHHHTTCEEEEEECCSCCTTCSTTSBC--CSHHHHH---HHHHB---CBCT-----
T ss_pred CCCC-HHHcCCCCcCHHHHHHHHHHHHHCCCEEEEEEeecccccccccCcc--ccccCCC---Cccce---EECC-----
Confidence 9999 9999 4899999999999999999999999999988752110 0000000 00111 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH--------HHHHHHHH-hcCC-CeE
Q 014447 155 DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP--------SITKVYME-NTSP-DFA 224 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~--------~~~~~~~~-~~~p-~~~ 224 (424)
.+.+ ..++..+++||++||+||++|++++++|++++||||||+|+|++++. ++++.+.+ ...| +++
T Consensus 293 --~~~~--~~~~~~~~~ln~~~p~v~~~i~d~~~~W~~e~gvDGfR~D~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~l 368 (657)
T 2wsk_A 293 --DGDY--HNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVMGRTPEFRQDAPLFTAIQNCPVLSQVKL 368 (657)
T ss_dssp --TSSB--CCSSSSSCCBCTTSHHHHHHHHHHHHHHHHTTCCCEEEETTTHHHHBSSSBCTTCHHHHHHHHCTTGGGSEE
T ss_pred --CCCe--eCCCCcCCcccCCCHHHHHHHHHHHHHHHHHhCCcEEEEecccccccccccchhHHHHHHHHhCcccCCcEE
Confidence 0111 12344568999999999999999999999999999999999987643 35555532 2334 789
Q ss_pred EeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch---hhhhhhhcCCCCCC---cCcC
Q 014447 225 VGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLKDSNGKPPGF---IGIL 298 (424)
Q Consensus 225 v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~ 298 (424)
+||.|...... |....+ ......++..++..+...+.++ ...+.......... ....
T Consensus 369 iaE~w~~~~~~------~~~~~f-----------~~~~~~~n~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~y~~~~~~ 431 (657)
T 2wsk_A 369 IAEPWDIAPGG------YQVGNF-----------PPLFAEWNDHFRDAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRL 431 (657)
T ss_dssp EECCBCSSTTC------BCTTCS-----------CTTEEEEEHHHHHHHHHHHHTSCSCHHHHHHHHBTTHHHHSSTTCC
T ss_pred EEccccCCCCc------ccccCC-----------CccHHHHhHHHHHHHHHHhccCCchHHHHHHHHhcchhhhccCCCC
Confidence 99998642210 000000 0001122223333333332221 11111110000000 0112
Q ss_pred CCcceecccCCCCCcCcccC-----------------------------CC---------CchhHHHHHHHHHcCCCeeE
Q 014447 299 PQNAVTFIDNHDTGSTQRLW-----------------------------PF---------PSDKVMLGYAYILTHPGTPC 340 (424)
Q Consensus 299 ~~~~~~f~~nHD~~r~~~~~-----------------------------~~---------~~~~~~~a~a~~l~~pG~P~ 340 (424)
+...++|++|||+.++.... +. ..+++++|++++|++||+|+
T Consensus 432 ~~~~~nf~~~HD~~~l~dl~~~~~~~~~~~g~~~~~g~~~~~s~n~~~~g~~~~~~~~~~~~~~~r~~~a~ll~~~G~P~ 511 (657)
T 2wsk_A 432 PSAAINLVTAHDGFTLRDCVCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQGTPM 511 (657)
T ss_dssp GGGEEECSCCSSSCCHHHHTTCSSCCCGGGSSTTCSSCSCCCCCCTTSSSSCCCHHHHHHHHHHHHHHHHHHHHSBSEEE
T ss_pred ccceeehhhcCCCCcHHHHHHHHhhhhhhccccccCCcccccccccccccCCCchhHHHHHHHHHHHHHHHHHHcccCCE
Confidence 45668999999986432110 00 12357899999999999999
Q ss_pred EecCCCC--------------------Cc-----chHHHHHHHHHHHHhcCCCCCCCeE--------EEecC--------
Q 014447 341 IFYDHFF--------------------DW-----GLKEAISKLAAVRNRNGINTASRVN--------ILASD-------- 379 (424)
Q Consensus 341 iyyG~~~--------------------~w-----~l~~~~~~L~~lR~~~~al~~G~~~--------~~~~~-------- 379 (424)
||||||+ +| +++++||+|++||+++|+|+.|.+. ++..+
T Consensus 512 iy~GdE~G~~~~g~~~~y~~d~~~~~~~W~~~~~~l~~~~~~Li~lRk~~pal~~g~~~~~~~~~v~~~~~~g~~~~~~~ 591 (657)
T 2wsk_A 512 LLAGDEHGHSQHGNNNAYCQDNQLTWLDWSQASSGLTAFTAALIHLRKRIPALVENRWWEEGDGNVRWLNRYAQPLSTDE 591 (657)
T ss_dssp EETTTTTTCCCTTCSCCTTCCSTTTSCCGGGCCHHHHHHHHHHHHHHTTCHHHHSCCCCCTTSSSEEEECTTSSBCCHHH
T ss_pred EEechhhccccCCCCCccccCCccCccCcccccHHHHHHHHHHHHHHhhCcccccCcccccCCCceEEEcCCCccccccc
Confidence 9999963 45 3899999999999999999888653 33333
Q ss_pred ----CCEEEEEECCEEEEEECCCCC
Q 014447 380 ----ADVYIAAIGDRVIMKIGPKMD 400 (424)
Q Consensus 380 ----~~v~~~~r~~~~lv~ln~~~~ 400 (424)
..+++|.|.++++|++|.+.+
T Consensus 592 w~~~~~~la~~r~~~~lv~~N~s~~ 616 (657)
T 2wsk_A 592 WQNGPKQLQILLSDRFLIAINATLE 616 (657)
T ss_dssp HHHSCSEEEEEETTTEEEEEECSSS
T ss_pred ccCCCceEEEEEcCCEEEEEcCCCC
Confidence 579999998889999998643
|
| >1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-50 Score=425.44 Aligned_cols=349 Identities=18% Similarity=0.249 Sum_probs=233.4
Q ss_pred CCceEEEeecC---CCCC----CCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--------------CCCCCCccccc
Q 014447 22 SPALLFQGFNW---ESSN----KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------------APQGYMPGRLY 80 (424)
Q Consensus 22 ~~~v~~~~f~~---ds~~----~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--------------~~~gY~~~d~~ 80 (424)
.+.+||+++.. ++.+ ..+|||++|+++|+|||+||||+||||||++++ ++|||++.||+
T Consensus 177 ~~~vIYe~hv~~f~~~~~~~~~~~~Gt~~gl~~~l~yLk~LGvt~V~L~Pi~~~~~~~~~~~~~~~g~~~~wGY~~~dy~ 256 (750)
T 1bf2_A 177 KDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYF 256 (750)
T ss_dssp GGCCEEEECHHHHHTTCTTSCGGGTTSHHHHHHTHHHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCCBSCSS
T ss_pred cccEEEEEEhhHhhCcCCCCCccCCcCHHHHHHHHHHHHHcCCCEEEECCcccCccccccccccccccccccCcCccccc
Confidence 45799999952 1111 248999999999999999999999999999975 35899999999
Q ss_pred CCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCcc
Q 014447 81 DLDASKYGS-------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEY 153 (424)
Q Consensus 81 ~id~~~~Gt-------~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 153 (424)
+|+ ++||| .+|||+||++||++||+||||+|+||++.+++.... +........|.... ....|
T Consensus 257 ~~~-~~yGt~~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~------d~~~~p~~~~~~~d---~~~~y 326 (750)
T 1bf2_A 257 SPD-RRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSS------DPTTATIYSWRGLD---NATYY 326 (750)
T ss_dssp CBC-GGGCSCCSTTHHHHHHHHHHHHHHHTTCEEEEEECCSSCTTCSBSSSS------CSSCBBCSSHHHHH---HHHHB
T ss_pred ccC-ccccCCCCCccHHHHHHHHHHHHHHCCCEEEEEEecccccCccccccc------ccccCCCcccccCC---CCcce
Confidence 999 99999 999999999999999999999999999987752100 00000000110000 00000
Q ss_pred C--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHH---------------------
Q 014447 154 S--DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS--------------------- 210 (424)
Q Consensus 154 ~--~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~--------------------- 210 (424)
. +..+.+ ...+...++||+++|+|+++|++++++|++++||||||||+|++++.+
T Consensus 327 ~~~~~~~~~--~~~~g~~~~ln~~~p~V~~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~f~~~~~~~~~~~~~~g~~~~~ 404 (750)
T 1bf2_A 327 ELTSGNQYF--YDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGNSCLNGAYTASAPNCPNGGYNFD 404 (750)
T ss_dssp CBCTTSSSB--CCSSSSSCCBCTTSHHHHHHHHHHHHHHHHTSCCCEEEETTGGGGGBCCSSSSCCTTSTTCTTCSCCBC
T ss_pred EECCCCCce--ecCCCcCCccccCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhcCchhhhcccccccccccccccccc
Confidence 0 000111 112344589999999999999999999999999999999999988644
Q ss_pred -------HHHHHHHh-c---C--C-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHH
Q 014447 211 -------ITKVYMEN-T---S--P-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAA 276 (424)
Q Consensus 211 -------~~~~~~~~-~---~--p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~ 276 (424)
|++.+.+. . . | +++|||.|..... .|....| ......++..++..+...
T Consensus 405 ~~~~~~~~~~~i~~~~~~~~~~g~~~~liaE~w~~~~~------~~~~~~F-----------~~~~~~wn~~~rd~l~~f 467 (750)
T 1bf2_A 405 AADSNVAINRILREFTVRPAAGGSGLDLFAEPWAIGGN------SYQLGGF-----------PQGWSEWNGLFRDSLRQA 467 (750)
T ss_dssp TTCTTSHHHHHHHHSCBCCTTCCSSBEEEECCCCSSTT------CCCTTCS-----------CTTCEEECHHHHHHHHHH
T ss_pred cccchHHHHHHHHhCcchhhccCCCceEEeccccCCcc------chhhccC-----------CccHHHHhHHHHHHHHHH
Confidence 44444322 1 2 4 6799999864320 0100000 001123344444444444
Q ss_pred hcc------hhhhhhhhcCCCCCCc---CcCCCcceecccCCCCCcCcccCCC---------------------------
Q 014447 277 VQG------ELWRLKDSNGKPPGFI---GILPQNAVTFIDNHDTGSTQRLWPF--------------------------- 320 (424)
Q Consensus 277 ~~~------~~~~~~~~~~~~~~~~---~~~~~~~~~f~~nHD~~r~~~~~~~--------------------------- 320 (424)
..| ....+........... ...|...++|++|||+.|+..+...
T Consensus 468 ~~g~~~~~~~~~~l~~~l~~~~~~y~~~~~~p~~~vnfv~nHD~~~l~dl~s~~~~~n~~~~~~G~n~dG~~~n~s~n~g 547 (750)
T 1bf2_A 468 QNELGSMTIYVTQDANDFSGSSNLFQSSGRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDGGTSTNYSWDQG 547 (750)
T ss_dssp HHCBTTBCCCHHHHHHHHTTCHHHHGGGTCCGGGEEECSCCSSSCCHHHHTTCSSCCCCCCTTSCCCCCCCSCCCCCCTT
T ss_pred hcCCCCCCCCHHHHHHHhhcchhhhccCCCCcceEEEEeecCCCCcHHHHHhhhcccchhhhhccCCCCCcccccccccc
Confidence 333 1112221111000000 1235667999999999775321110
Q ss_pred ----------CchhHHHHHHHHHcCCCeeEEecCCCCC--------------------c-------chHHHHHHHHHHHH
Q 014447 321 ----------PSDKVMLGYAYILTHPGTPCIFYDHFFD--------------------W-------GLKEAISKLAAVRN 363 (424)
Q Consensus 321 ----------~~~~~~~a~a~~l~~pG~P~iyyG~~~~--------------------w-------~l~~~~~~L~~lR~ 363 (424)
..++.++|++++|++||+||||||||++ | ++.+++++|++||+
T Consensus 548 ~~g~t~~~~~r~~~~r~a~a~ll~~~G~P~i~~GdE~g~t~~G~~n~y~~~~~i~~~dW~~~~~~~~l~~~~~~Li~lRk 627 (750)
T 1bf2_A 548 MSAGTGAAVDQRRAARTGMAFEMLSAGTPLMQGGDEYLRTLQCNNNAYNLDSSANWLTYSWTTDQSNFYTFAQRLIAFRK 627 (750)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHHSSSEEEEETTGGGTCCCTTCSCCTTCCSTTTSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCchhhHHHHHHHHHHHHHHHHcCCcceeeechhhccCCCCCCCcccCCCcccccCCCccccchHHHHHHHHHHHHHh
Confidence 0136889999999999999999998742 4 48999999999999
Q ss_pred hcCCCCCCCe------EEEe-------------cCCCEEEEEEC-------CEEEEEECCCC
Q 014447 364 RNGINTASRV------NILA-------------SDADVYIAAIG-------DRVIMKIGPKM 399 (424)
Q Consensus 364 ~~~al~~G~~------~~~~-------------~~~~v~~~~r~-------~~~lv~ln~~~ 399 (424)
++|+|+.+.+ .++. .+..+++|.|. +.++|++|.+.
T Consensus 628 ~~pal~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~la~~r~~~~~~~~~~~~vv~N~~~ 689 (750)
T 1bf2_A 628 AHPALRPSSWYSGSQLTWYQPSGAVADSNYWNNTSNYAIAYAINGPSLGDSNSIYVAYNGWS 689 (750)
T ss_dssp HCGGGSCSSCCCTTTEEEECTTSSBCCHHHHTCTTCCEEEEEECGGGGTCSSCEEEEEECSS
T ss_pred hChhhcCCcccccCcEEEecCCCCccCcccccCCCCCEEEEEEECCCCCCCCEEEEEECCCC
Confidence 9999998864 4432 14689999984 36899999864
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-50 Score=421.79 Aligned_cols=332 Identities=16% Similarity=0.224 Sum_probs=231.0
Q ss_pred CceEEEeecCCCCC--CCCCcHHHHHh-hhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHH
Q 014447 23 PALLFQGFNWESSN--KAGGWYNSLKN-SIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLI 97 (424)
Q Consensus 23 ~~v~~~~f~~ds~~--~~~G~~~gi~~-~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv 97 (424)
..+||+++. .++. .+.|||+++++ +|+|||+||||+||||||++++ .+|||+++||++|+ |+|||.+||++||
T Consensus 180 ~~~IYE~hv-~~~~~~~~~Gt~~~l~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~dy~a~~-~~~Gt~~df~~lv 257 (755)
T 3aml_A 180 APRIYEAHV-GMSGEEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVS-SRSGTPEDLKYLV 257 (755)
T ss_dssp SCEEEEEES-TTCSSSSSCCCHHHHHHHTHHHHHHTTCCEEEEESCEECSCGGGTTCSCSEEEEEC-GGGCCHHHHHHHH
T ss_pred CCEEEEEee-eccccCCCCCCHHHHHHHHHHHHHHcCCCEEEECchhcCCCCCCCCCccCCCCccC-CCCCCHHHHHHHH
Confidence 469999997 3432 34699999988 7999999999999999999987 68999999999999 9999999999999
Q ss_pred HHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCH
Q 014447 98 QAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP 177 (424)
Q Consensus 98 ~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np 177 (424)
++||++||+||||+|+||++.+++.... .|..+. .....|+ .... .+ +. ..| +.++||++||
T Consensus 258 ~~~H~~Gi~VilD~V~NH~~~~~~~g~~---~fd~~~-~~~~~yf---~~~~-------~g-~~--~~w-~~~~lN~~~p 319 (755)
T 3aml_A 258 DKAHSLGLRVLMDVVHSHASNNVTDGLN---GYDVGQ-NTHESYF---HTGD-------RG-YH--KLW-DSRLFNYANW 319 (755)
T ss_dssp HHHHHTTCEEEEEECCSCBCCCTTTSGG---GGCSSC-CGGGSSB---CCGG-------GG-EE--TTT-TEECBCTTSH
T ss_pred HHHHHCCCEEEEEEeccccccccccchh---ccccCC-CCCccee---ecCC-------CC-cc--CCC-CCceeccCCH
Confidence 9999999999999999999988742111 111000 0001111 1000 00 00 011 3468999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEecccCCC--------------------------CHHHHHHH---HHhcCC-CeEEee
Q 014447 178 RVQKELSDWMNWLKTEIGFDGWRFDFVKGY--------------------------APSITKVY---MENTSP-DFAVGE 227 (424)
Q Consensus 178 ~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~--------------------------~~~~~~~~---~~~~~p-~~~v~E 227 (424)
+||++|++++++|++++||||||+|++++| ..+||+.+ +++..| +++|||
T Consensus 320 ~V~~~l~~~l~~Wl~e~gvDGfR~Dav~~m~~~~~g~~~~f~~~~~~~~~~~~~~~ai~fl~~~~~~v~~~~p~~~lIaE 399 (755)
T 3aml_A 320 EVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEYFSLDTDVDAIVYMMLANHLMHKLLPEATIVAE 399 (755)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEETTHHHHHBTTTTTTCCCCSCGGGTSSTTBCHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecchhhhhhcccCcccccccccccccccccchhHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 999999999999999999999999999643 11355554 556677 789999
Q ss_pred ecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccc----hHHHHHHhcc------hhhhhhhhcCCCCCCcCc
Q 014447 228 KWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTT----KGILQAAVQG------ELWRLKDSNGKPPGFIGI 297 (424)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 297 (424)
.|.+.+. . ...|.. ++. .|||.+ ...+...+.+ .+..+....... .
T Consensus 400 ~~~~~p~-------~--------~~~~~~--ggl--gFd~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~-----~ 455 (755)
T 3aml_A 400 DVSGMPV-------L--------CRPVDE--GGV--GFDFRLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNR-----R 455 (755)
T ss_dssp CSSCCTT-------T--------TSCGGG--TSC--CCSEEECTTHHHHHHHHHHHCCGGGCCHHHHHHHHHCS-----C
T ss_pred ccCCCcc-------c--------eeeccC--CCc--cccccccccchHHHHHHHhhCCccccCHHHHHHHHHhc-----c
Confidence 9864221 0 001111 121 244433 2223333221 111222211110 1
Q ss_pred CCCcceecccCCCCCcCcccC-----------------CC-------CchhHHHHHHHHHcCCCeeEE-ecCCCC-----
Q 014447 298 LPQNAVTFIDNHDTGSTQRLW-----------------PF-------PSDKVMLGYAYILTHPGTPCI-FYDHFF----- 347 (424)
Q Consensus 298 ~~~~~~~f~~nHD~~r~~~~~-----------------~~-------~~~~~~~a~a~~l~~pG~P~i-yyG~~~----- 347 (424)
.+.+.++|++|||+.|..... .. ..++.|+|.++++++||+|+| |||+|+
T Consensus 456 ~~~~~vnf~~nHD~~r~g~~~~~f~l~d~~~~~~~~~l~~~~~~~~~~~~~~k~a~~~llt~pG~P~lly~G~E~G~~~~ 535 (755)
T 3aml_A 456 YTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPTINRGIALQKMIHFITMALGGDGYLNFMGNEFGHPEW 535 (755)
T ss_dssp TTSCEEECSCCCCTTSCCCBCHHHHHHTTHHHHSCBSSSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETTGGGTCCSB
T ss_pred CchhheehhhcCCccccccccccccccchhhhhhhhhccccchhhhhhHHHHHHHHHHHHHCCCCEEEEeCchhcCCcCc
Confidence 345678999999998874321 00 124678999999999999977 999864
Q ss_pred -----------------Cc-----------chHHHHHHHHHHHHhcCCCCCCCeEEE--ecCCCEEEEEECCEEEEEECC
Q 014447 348 -----------------DW-----------GLKEAISKLAAVRNRNGINTASRVNIL--ASDADVYIAAIGDRVIMKIGP 397 (424)
Q Consensus 348 -----------------~w-----------~l~~~~~~L~~lR~~~~al~~G~~~~~--~~~~~v~~~~r~~~~lv~ln~ 397 (424)
+| .+.+++|+|++||+++|+|+.|..... ..++++++|.|. .++|++|.
T Consensus 536 ~~~p~~g~~~~~~~~r~~W~~~~~~~~~~~~l~~~~r~Li~lRk~~paL~~G~~~~~~~~~~~~vlaf~R~-~llVv~N~ 614 (755)
T 3aml_A 536 IDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEFSFLSSSKQIVSDMNEKDKVIVFERG-DLVFVFNF 614 (755)
T ss_dssp CCCCCGGGTTCCTTSSCCHHHHHCTTBSHHHHHHHHHHHHHHHHHHCGGGCCCEEEEEEETTTTEEEEEET-TEEEEEEC
T ss_pred ccCcccCCCCCcccccCCcccccCccchhHHHHHHHHHHHHHHHhChhhcCCCEEEEeecCCCcEEEEEEC-CEEEEEEC
Confidence 23 277899999999999999998854322 347899999997 68899998
Q ss_pred CC
Q 014447 398 KM 399 (424)
Q Consensus 398 ~~ 399 (424)
+.
T Consensus 615 s~ 616 (755)
T 3aml_A 615 HP 616 (755)
T ss_dssp CS
T ss_pred CC
Confidence 54
|
| >2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=421.60 Aligned_cols=346 Identities=21% Similarity=0.366 Sum_probs=234.3
Q ss_pred CCceEEEeec--CCCC-------CCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCC-------------------CC-CC
Q 014447 22 SPALLFQGFN--WESS-------NKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS-------------------VA-PQ 72 (424)
Q Consensus 22 ~~~v~~~~f~--~ds~-------~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~-------------------~~-~~ 72 (424)
.+.|||+++. |... ...+|||+||+++|+|||+||||+||||||++. .+ +|
T Consensus 150 ~~~viYE~hv~~f~~~~~~~~~~~~~~Gt~~gi~~~L~yLk~LGvt~I~L~Pi~~~~~~~e~~~~~~~~~~~~~~~~~~w 229 (714)
T 2ya0_A 150 EDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNW 229 (714)
T ss_dssp GGCCEEEECHHHHHCCGGGTTTCSSCTTSHHHHHTTHHHHHHHTCSEEEESCCBCBSSCBGGGTTSCCCSCCSSSCSCCC
T ss_pred cccEEEEEEehhhccCCCCccccccCCcCHHHHHHHhHHHHHcCCCEEEECCcccccccCcccccccccccccCcCcCcc
Confidence 3479999884 1111 123599999999999999999999999999973 12 49
Q ss_pred CCCcccccCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCc
Q 014447 73 GYMPGRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144 (424)
Q Consensus 73 gY~~~d~~~id~~~~Gt--------~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 144 (424)
||++.||++++ ++||+ .+|||+||++||++||+||||+|+||++.++. |.+- .++|+..
T Consensus 230 GY~~~~~~a~~-~~yg~~~~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~--------~~~~----~~~yy~~ 296 (714)
T 2ya0_A 230 GYDPQNYFSLT-GMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDL--------FEDL----EPNYYHF 296 (714)
T ss_dssp SCSBSCSSSBC-STTSSCTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTBCSCHHH--------HHTT----STTTSBC
T ss_pred CCCCccCcccC-hhhccCCCCccchHHHHHHHHHHHHHCCCEEEEEeccCcccCccc--------cccc----CCCeeEE
Confidence 99999999999 99999 79999999999999999999999999997652 1110 1122211
Q ss_pred ccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC
Q 014447 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP 221 (424)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p 221 (424)
. . ..+.... .+. ..++|+++|.||++|++++++|++++||||||||++++++.++|+.+ +++.+|
T Consensus 297 ~--~-------~~g~~~~--~~~-~~~l~~~~~~v~~~i~d~l~~W~~e~~vDGfR~D~~~~~~~~~~~~~~~~~~~~~p 364 (714)
T 2ya0_A 297 M--D-------ADGTPRT--SFG-GGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGDHDAASIEEAYKAARALNP 364 (714)
T ss_dssp B--C-------TTCCBCE--ETT-EEBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHHHCT
T ss_pred e--C-------CCCCCcc--ccC-CCCcccCCHHHHHHHHHHHHHHHHhhCceEEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 0 0 0000000 011 25699999999999999999999999999999999999999998877 444577
Q ss_pred -CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh---------cc---hhhhhhhhc
Q 014447 222 -DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV---------QG---ELWRLKDSN 288 (424)
Q Consensus 222 -~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~---------~~---~~~~~~~~~ 288 (424)
+++|||.|.... +...+.. ......|+... +....|+..++..+...+ .| .+..+....
T Consensus 365 ~~~ligE~w~~~~----g~~~~~~---~~~~~~~~~~~-~~~~~f~d~~r~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l 436 (714)
T 2ya0_A 365 NLIMLGEGWRTYA----GDENMPT---KAADQDWMKHT-DTVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNL 436 (714)
T ss_dssp TCEEEECCCSCCC----CSTTCCC---CBSSGGGGGGC-SSSEEECHHHHHHHHCCSSSTTCCCTTTTCCEEHHHHHHHH
T ss_pred CeEEEeccccccc----Ccccccc---cccchhHHhcC-CCccccchHHHHHHhccCCcccchhhhcCCcccHHHHHHHH
Confidence 789999997421 0000000 00001222211 123345444444443211 01 112222221
Q ss_pred C-CCCCCcCcCCCcceecccCCCCCcCcccC----CCC----------chhHHHHHHHHHcCCCeeEEecCCCC------
Q 014447 289 G-KPPGFIGILPQNAVTFIDNHDTGSTQRLW----PFP----------SDKVMLGYAYILTHPGTPCIFYDHFF------ 347 (424)
Q Consensus 289 ~-~~~~~~~~~~~~~~~f~~nHD~~r~~~~~----~~~----------~~~~~~a~a~~l~~pG~P~iyyG~~~------ 347 (424)
. .........|...++|++|||+.|+.... ..+ .++.++|++++|++||+||||||||+
T Consensus 437 ~~~~~~~~~~~p~~~vnfv~nHD~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~la~~lll~~~G~P~i~~GdE~g~~~~~ 516 (714)
T 2ya0_A 437 IAQPTNFEADSPGDVIQYIAAHDNLTLFDIIAQSIKKDPSKAENYAEIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQF 516 (714)
T ss_dssp TTCCTTSCCSSGGGEEECSCCSSSSCHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHSSSEEEEETTTTTTCCCBC
T ss_pred hcCccccCCCCHHHHhhHHHhCCCcchhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHCCCCcEEEechhhcccCCC
Confidence 1 11111122466789999999999864321 111 13788999999999999999999863
Q ss_pred ------------------------------------------------Cc-------------chHHHHHHHHHHHHhcC
Q 014447 348 ------------------------------------------------DW-------------GLKEAISKLAAVRNRNG 366 (424)
Q Consensus 348 ------------------------------------------------~w-------------~l~~~~~~L~~lR~~~~ 366 (424)
+| +++++||+|++||+++|
T Consensus 517 ~d~~~~~~~~~gr~~e~~~~~~~~~g~~f~~p~~~~d~~~~~~~~~~ldW~~~~~~~~~~~~~~l~~~~~~Li~lRk~~p 596 (714)
T 2ya0_A 517 RNPAYRTPVAEDKVPNKSHLLRDKDGNPFDYPYFIHDSYDSSDAVNKFDWTKATDGKAYPENVKSRDYMKGLIALRQSTD 596 (714)
T ss_dssp CCGGGSSCCCGGGCCTTEEEEECTTCCEEEEEEEESCCTTCCHHHHCCCHHHHHCTTTCHHHHHHHHHHHHHHHHHHTCG
T ss_pred CCchhhhccccccccchhhhhhhccccccccccccccccCCCCcceeccCCcccccccccchHHHHHHHHHHHHHHhhCh
Confidence 23 26899999999999999
Q ss_pred CCCCCCeEEE-------e--------cCCCEEEEEE----CCEEEEEECCCCC
Q 014447 367 INTASRVNIL-------A--------SDADVYIAAI----GDRVIMKIGPKMD 400 (424)
Q Consensus 367 al~~G~~~~~-------~--------~~~~v~~~~r----~~~~lv~ln~~~~ 400 (424)
+|+.|.+..+ . .++.+++|.| +++++|++|.+.+
T Consensus 597 ~l~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~V~~N~~~~ 649 (714)
T 2ya0_A 597 AFRLKSLQDIKDRVHLITVPGQNGVEKEDVVIGYQITAPNGDIYAVFVNADEK 649 (714)
T ss_dssp GGGCSSHHHHHHHEEESSCTTSTTCCSEESEEEEEEECTTSCEEEEEEECSSS
T ss_pred hhcCCchhhhcCceEEECCCCCCCCCCCCcEEEEEEeCCCCCEEEEEECCCCC
Confidence 9999976422 1 1236899997 3579999998653
|
| >3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=416.65 Aligned_cols=348 Identities=19% Similarity=0.302 Sum_probs=235.5
Q ss_pred CCceEEEeecCCCCC---------CCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCC------------------CC-CCC
Q 014447 22 SPALLFQGFNWESSN---------KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS------------------VA-PQG 73 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~---------~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~------------------~~-~~g 73 (424)
.+.|||+++..+... .+.|||.+++++|+|||+||||+||||||++. .+ +||
T Consensus 266 ~~~vIYElhvr~ft~~~~~~~~~~~~~Gt~~gl~~~L~yLk~LGvtaV~L~Pi~~~~~~~e~~~~~~~~~~~~~~~ynwG 345 (877)
T 3faw_A 266 QDAVIYEAHVRDFTSDQSLDGKLKNQLGTFAAFSEKLDYLQKLGVTHIQLLPVLSYFYVNEMDKSRSTAYTSSDNNYNWG 345 (877)
T ss_dssp GGCEEEEECTTGGGCCGGGTTTCSSCTTSHHHHGGGHHHHHHHTCSEEEESCCBCBSSCBTTCCCCCCSCCSSSCSCCCS
T ss_pred cccEEEEEEchHhcCCCCCCccccCCCCCHHHHHHHHHHHHHcCCCEEEEcchhcccccccccccccccccCCCCCCccC
Confidence 457999999632111 12499999999999999999999999999972 12 399
Q ss_pred CCcccccCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcc
Q 014447 74 YMPGRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 145 (424)
Q Consensus 74 Y~~~d~~~id~~~~Gt--------~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 145 (424)
|++.+|++++ ++||| .+|||+||++||++||+||||+|+|||+.+++ |.+. .+.|+...
T Consensus 346 Y~~~~~~a~~-~~yGt~p~~~~~~~~efk~lV~~~H~~GI~VILDvV~NH~a~~~~--------~~~~----~p~yy~~~ 412 (877)
T 3faw_A 346 YDPQSYFALS-GMYSEKPKDPSARIAELKQLIHDIHKRGMGVILDVVYNHTAKTYL--------FEDI----EPNYYHFM 412 (877)
T ss_dssp CSBSCSSSBC-STTCSCTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTCCSCTHH--------HHTT----STTTSBCB
T ss_pred cCcCcccccc-ccccCCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeeccccCccc--------cccC----CCceeeee
Confidence 9999999999 99999 69999999999999999999999999998753 2211 01222110
Q ss_pred cccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC-
Q 014447 146 ICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP- 221 (424)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p- 221 (424)
+..+.+.. ..+.++||+++|.||++|++++++|++++||||||||++++++.++|+.+ +++.+|
T Consensus 413 ---------~~dg~~~~---~~~g~~ln~~~p~Vr~~i~d~l~~Wv~e~gVDGFRfD~a~~~~~~~~~~~~~~~~~~~P~ 480 (877)
T 3faw_A 413 ---------NEDGSPRE---SFGGGRLGTTHAMSRRVLVDSIKYLTSEFKVDGFRFDMMGDHDAAAIELAYKEAKAINPN 480 (877)
T ss_dssp ---------CTTSCBCE---ETTEECBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHHHCTT
T ss_pred ---------CCCCCeec---cCCCcccccCCHHHHHHHHHHHHHHHHHcCCcEEEEecCCcCCHHHHHHHHHHHHhhCCC
Confidence 00011000 01235799999999999999999999999999999999999999999988 445577
Q ss_pred CeEEeeecCCCCC--C-C--CCC---CCCC--CCCchhHHHHHHHhcCCceeeecccchHHHHHHhcchhhhhhhhcCC-
Q 014447 222 DFAVGEKWDSLSY--G-P--DGK---PDAN--QDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGK- 290 (424)
Q Consensus 222 ~~~v~E~~~~~~~--~-~--~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~~~~~- 290 (424)
++++||.|....- . + ... ..++ ...++..++.++.+.........|.. .-.+++..+......
T Consensus 481 ~~ligE~Wd~~~g~~~~~~~~~~~~~~~~~~~i~~f~d~iR~~~rg~~~~~~~~gf~~------g~~~~l~~~~~~l~~~ 554 (877)
T 3faw_A 481 MIMIGEGWRTFQGDQGKPVKPADQDWMKSTDTVGVFSDDIRNSLKSGFPNEGTPAFIT------GGPQSLQGIFKNIKAQ 554 (877)
T ss_dssp CEEEECCCSCCCCBTTBCCCBSSGGGGGGCSSEEEECHHHHHHHHCCTTCTTCCCGGG------TCCEEHHHHHHHHTTC
T ss_pred cEEEEcccccccccccccccccchhhhhcCCccchhhHHHHHHHccccccccchhhhc------CCcHHHHHHHHHhhcC
Confidence 7899999974210 0 0 000 0000 01123334444332100000000000 000112222222111
Q ss_pred CCCCcCcCCCcceecccCCCCCcCcccCCCC------------chhHHHHHHHHHcCCCeeEEecCCCCC----------
Q 014447 291 PPGFIGILPQNAVTFIDNHDTGSTQRLWPFP------------SDKVMLGYAYILTHPGTPCIFYDHFFD---------- 348 (424)
Q Consensus 291 ~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~------------~~~~~~a~a~~l~~pG~P~iyyG~~~~---------- 348 (424)
........|...++|++|||+.++....... .++.++|++++|+++|+|+||+|||++
T Consensus 555 ~~~~~~~~P~~sVnFV~nHD~~tl~Dlls~~~k~n~~~~~~~~~~r~~lA~alllls~GiP~i~~GdE~grs~~gnnn~Y 634 (877)
T 3faw_A 555 PGNFEADSPGDVVQYIAAHDNLTLHDVIAKSINKDPKVAEEDIHRRLRLGNVMILTSQGTAFIHSGQEYGRTKRLLNPDY 634 (877)
T ss_dssp CSSSCCSSGGGEEECSCCSSSSCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTSSSEEEEETTTTTTCCCBCCCGGG
T ss_pred ccccccCCccceeeeeecccchhHHhhhhhhhcCCcccCHHHHHHHHHHHHHHHHhcCCccccccchhhhcccCCCcccc
Confidence 1112122467889999999998875543211 247889999999999999999998742
Q ss_pred ----------------------------------------c-------------chHHHHHHHHHHHHhcCCCCCCCe--
Q 014447 349 ----------------------------------------W-------------GLKEAISKLAAVRNRNGINTASRV-- 373 (424)
Q Consensus 349 ----------------------------------------w-------------~l~~~~~~L~~lR~~~~al~~G~~-- 373 (424)
| ++.+++|+|++||+++|+|+.+.+
T Consensus 635 cq~~~~D~~p~k~~~~d~p~~~~~f~~nsy~s~d~in~~DW~~~~~~~~~~~~~~l~~~~k~Li~lRk~~palr~~~~~~ 714 (877)
T 3faw_A 635 MTKVSDDKLPNKATLIEAVKEYPYFIHDSYDSSDAINHFDWAAATDNNKHPISTKTQAYTAGLITLRRSTDAFRKLSKAE 714 (877)
T ss_dssp SSCCCGGGCCTTEEECTTCSSSCEEESCCTTCCHHHHSCCHHHHHCTTTCHHHHHHHHHHHHHHHHHHHCGGGSCSCHHH
T ss_pred ccccccccccccccccccccccccccccccCCcccccccccccccccccccccHHHHHHHHHHHHHHhhChhhhCCchHh
Confidence 2 178999999999999999998853
Q ss_pred -----EEEec--------CCCEEEEEE----CCEEEEEECCCCC
Q 014447 374 -----NILAS--------DADVYIAAI----GDRVIMKIGPKMD 400 (424)
Q Consensus 374 -----~~~~~--------~~~v~~~~r----~~~~lv~ln~~~~ 400 (424)
.++.. ++.+++|.+ ++.++|++|.+..
T Consensus 715 i~~~v~~~~~~~~~~~~~~~~vlay~~~~~~~~~~lVv~N~~~~ 758 (877)
T 3faw_A 715 IDREVSLITEVGQGDIKEKDLVIAYQTIDSKGDIYAVFVNADSK 758 (877)
T ss_dssp HHHHCEESSCTTSTTCCSEESEEEEEEECTTCCEEEEEEECSSS
T ss_pred hcCceEEEcCCCCCCcCcCCCEEEEEEECCCCCEEEEEEeCCCC
Confidence 44433 246999986 3578899998643
|
| >2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-48 Score=419.93 Aligned_cols=345 Identities=22% Similarity=0.364 Sum_probs=232.1
Q ss_pred CceEEEeec--CCCC-------CCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCC-------------------CC-CCC
Q 014447 23 PALLFQGFN--WESS-------NKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS-------------------VA-PQG 73 (424)
Q Consensus 23 ~~v~~~~f~--~ds~-------~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~-------------------~~-~~g 73 (424)
+.|||+++. |... ....|||+||+++|+|||+||||+||||||++. .+ +||
T Consensus 458 ~~vIYE~hv~~ft~~~~~~~~~~~~~Gt~~gl~~~LdyLk~LGvtaV~L~Pv~~~~~~~e~~~~~~~~~y~~~~~~ynwG 537 (1014)
T 2ya1_A 458 DAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWG 537 (1014)
T ss_dssp GCCEEEECHHHHHCCGGGTTTCSSCTTSHHHHHTTHHHHHHHTCSEEEESCCBCBSSCBGGGTTSCCCSCCSSSCSCCCS
T ss_pred ccEEEEEecCCCCCCCCccccccCCCcCHHHHHHHhHHHHHcCCCeEEecCcccccccccccccccccccccCcCCcccC
Confidence 469999874 1111 123599999999999999999999999999973 11 499
Q ss_pred CCcccccCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcc
Q 014447 74 YMPGRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 145 (424)
Q Consensus 74 Y~~~d~~~id~~~~Gt--------~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 145 (424)
|++.+|++++ ++||+ .+|||+||++||++||+||||+|+||++.++. |.+- .++|+...
T Consensus 538 Y~~~~y~a~~-~~ygt~p~~~~~~~~efk~lV~~~H~~GI~VIlDvV~NHt~~~~~--------~~~~----~~~yy~~~ 604 (1014)
T 2ya1_A 538 YDPQNYFSLT-GMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDL--------FEDL----EPNYYHFM 604 (1014)
T ss_dssp CSBSCSSSBC-STTCSCTTCTTHHHHHHHHHHHHHHTTTCEEEEEECTTCCSCHHH--------HHTT----STTTSBCB
T ss_pred CCcCcCcccc-ccccCCCccccchHHHHHHHHHHHHHcCCEEEEEEeccccccccc--------cccC----CCCeeEEe
Confidence 9999999999 99998 69999999999999999999999999997652 1110 11221100
Q ss_pred cccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC-
Q 014447 146 ICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP- 221 (424)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p- 221 (424)
.. ++ .... .+ +..++|+++|+||++|++++++|++++||||||||++++++.++|+.+ +++.+|
T Consensus 605 --~~-----~g--~~~~--~~-~~~~l~~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~p~ 672 (1014)
T 2ya1_A 605 --DA-----DG--TPRT--SF-GGGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGDHDAASIEEAYKAARALNPN 672 (1014)
T ss_dssp --CT-----TC--CBCE--ET-TEECBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHHHCTT
T ss_pred --CC-----CC--Cccc--CC-CCCCcCcCCHHHHHHHHHHHHHHHHhcCceEEEEeCCCCCCHHHHHHHHHHHHHhCCC
Confidence 00 00 0000 01 124699999999999999999999999999999999999999998887 444577
Q ss_pred CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh---------cc---hhhhhhhhcC
Q 014447 222 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV---------QG---ELWRLKDSNG 289 (424)
Q Consensus 222 ~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~---------~~---~~~~~~~~~~ 289 (424)
+++|||.|.... ++. .+... .....|+... +....|+..++..+...+ .| .+..+.....
T Consensus 673 ~~ligE~W~~~~--g~~--~~~~~---~~~~~w~~~~-~~~~~f~d~~r~~l~~~~~~~~~~~~~~g~~~~~~~l~~~l~ 744 (1014)
T 2ya1_A 673 LIMLGEGWRTYA--GDE--NMPTK---AADQDWMKHT-DTVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLI 744 (1014)
T ss_dssp CEEEECCCSCCC--CST--TCCCC---BSSGGGGGGC-SSSEEECHHHHHHHSCCTTSTTCCCTTTTCCEEHHHHHHHHT
T ss_pred eEEEEeeccccc--Ccc--ccccc---ccccchhhcC-CcccchhHHHHHHHhcccccccchhhhccCcccHHHHHHHHh
Confidence 789999996421 000 00000 0001222211 122234443333332110 01 1112222111
Q ss_pred -CCCCCcCcCCCcceecccCCCCCcCcccC----CCC----------chhHHHHHHHHHcCCCeeEEecCCCC-------
Q 014447 290 -KPPGFIGILPQNAVTFIDNHDTGSTQRLW----PFP----------SDKVMLGYAYILTHPGTPCIFYDHFF------- 347 (424)
Q Consensus 290 -~~~~~~~~~~~~~~~f~~nHD~~r~~~~~----~~~----------~~~~~~a~a~~l~~pG~P~iyyG~~~------- 347 (424)
.........|...++|++|||+.|+.... ..+ .+++++|++++|++||+||||||||+
T Consensus 745 ~~~~~~~~~~p~~~vnfv~nHD~~~l~d~v~~~~~~~~~~~~~~~~~~~~~rla~~lll~spGiP~i~~GdE~g~t~~~~ 824 (1014)
T 2ya1_A 745 AQPTNFEADSPGDVIQYIAAHDNLTLFDIIAQSIKKDPSKAENYAEIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQFR 824 (1014)
T ss_dssp TCCSSSCCSSGGGEEECSCCSSSSCHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHTSSSEEEEETTTTTTCCCBCC
T ss_pred cCccccccCChhhheEeeecCCCCcccchhhhhccCCcccchhhHHHHHHHHHHHHHHHhCCCCcEEEechhhcccCCCC
Confidence 11111122466789999999998864321 111 13788999999999999999999863
Q ss_pred -----------------------------------------------Cc-------------chHHHHHHHHHHHHhcCC
Q 014447 348 -----------------------------------------------DW-------------GLKEAISKLAAVRNRNGI 367 (424)
Q Consensus 348 -----------------------------------------------~w-------------~l~~~~~~L~~lR~~~~a 367 (424)
+| ++++++|+|++||+++|+
T Consensus 825 d~~~r~~~~~g~~~e~~~~~~~~~g~~f~~~~~~~dsy~~~~~~n~ldW~~~~~~~~~~~~~~l~~f~r~Li~LRk~~pa 904 (1014)
T 2ya1_A 825 NPAYRTPVAEDKVPNKSHLLRDKDGNPFDYPYFIHDSYDSSDAVNKFDWTKATDGKAYPENVKSRDYMKGLIALRQSTDA 904 (1014)
T ss_dssp CGGGSSCCCTTTCCTTEEEEECTTSCEEEEEEEESCCTTCCHHHHCCCHHHHHCTTTCHHHHHHHHHHHHHHHHHHHCGG
T ss_pred ChhhhhhhhcccccchhhhhhcccccccccccccccCCCCCccccccCCccccccccccchHHHHHHHHHHHHHHhhCcc
Confidence 23 278899999999999999
Q ss_pred CCCCCeEE-------Ee--------cCCCEEEEEE----CCEEEEEECCCCC
Q 014447 368 NTASRVNI-------LA--------SDADVYIAAI----GDRVIMKIGPKMD 400 (424)
Q Consensus 368 l~~G~~~~-------~~--------~~~~v~~~~r----~~~~lv~ln~~~~ 400 (424)
|+.|.+.. +. .++.+++|.| ++.++|++|.+.+
T Consensus 905 l~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~a~~r~~~~~~~~lVv~N~~~~ 956 (1014)
T 2ya1_A 905 FRLKSLQDIKDRVHLITVPGQNGVEKEDVVIGYQITAPNGDIYAVFVNADEK 956 (1014)
T ss_dssp GSCSCHHHHHHHEEESSCTTSTTCCSEESEEEEEEECTTSCEEEEEEECSSS
T ss_pred ccCCchhhhcCceEEEcCCCCCcccCCCcEEEEEEECCCCCEEEEEEcCCCC
Confidence 99987632 21 1236899997 3589999998653
|
| >2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-46 Score=403.78 Aligned_cols=358 Identities=18% Similarity=0.226 Sum_probs=228.9
Q ss_pred eEEEeecC---CCCCC----CCCcHHHHHh-------hhhHHHHcCCCEEEeCCCCCC------C---------------
Q 014447 25 LLFQGFNW---ESSNK----AGGWYNSLKN-------SIPDLSNAGITHVWLPPPSQS------V--------------- 69 (424)
Q Consensus 25 v~~~~f~~---ds~~~----~~G~~~gi~~-------~L~ylk~lGv~~I~l~Pi~~~------~--------------- 69 (424)
|||+++.. ++.++ .+|||.|+++ +|+|||+||||+||||||++. +
T Consensus 425 vIYE~hvr~ft~~~~~~~~~~~Gt~~g~~e~~~~~i~~L~~L~~lGvt~i~LlPv~~~~~v~e~~~~~~~~~~p~~~~~~ 504 (1083)
T 2fhf_A 425 TIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLCE 504 (1083)
T ss_dssp EEEEECHHHHHTTCTTSCGGGTTSGGGGGCTTSHHHHHHHHHHHHTCCEEEESCCEEESSSCCCGGGCCCTTSBHHHHHH
T ss_pred EEEEEecchhcCCCCCCCcCCCCChhhhhhhhhhhHHHHHHHHhcCCCEEEECCcccccccccccccccccccccccccc
Confidence 99999842 22222 3699999977 699999999999999999852 1
Q ss_pred ------------------------------------------------C--CCCCCcccccCCCCCCCCC-------HHH
Q 014447 70 ------------------------------------------------A--PQGYMPGRLYDLDASKYGS-------QAD 92 (424)
Q Consensus 70 ------------------------------------------------~--~~gY~~~d~~~id~~~~Gt-------~ed 92 (424)
. +|||++.||++|+ ++||| ++|
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~d~~nwGYd~~~y~a~~-~~yGt~p~~~~r~~e 583 (1083)
T 2fhf_A 505 VNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPE-GSYATDPEGTARIKE 583 (1083)
T ss_dssp HCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBTTBCHHHHHHHHHTTSSSCCCCCCEEEEEEEC-STTSSCCSTTHHHHH
T ss_pred cccccccccccccccccccchhhhhcccccccchhhhhhhhhccccccCCCCCCCCcCcCCCcC-hhhcCCCCccccHHH
Confidence 1 3999999999999 99999 899
Q ss_pred HHHHHHHHHHc-CCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCC
Q 014447 93 LKSLIQAFRQK-GIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPD 171 (424)
Q Consensus 93 l~~Lv~~aH~~-Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (424)
||+||++||++ ||+||||+|+||++.+|+.....+ +... .+.|+.... . ..+.+. .+.+..+
T Consensus 584 fk~LV~~~H~~~GI~VILDvV~NHt~~~~~~~~~~~--~d~~----~p~yy~~~~-p-------~~g~~~---~~tg~~d 646 (1083)
T 2fhf_A 584 FRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSV--LDKI----VPWYYQRLN-E-------TTGSVE---SATCCSD 646 (1083)
T ss_dssp HHHHHHHHHHTSCCEEEEEECTTEESCCSSSCTTCC--HHHH----STTTSBCBC-T-------TTCCBC---CTTSSEE
T ss_pred HHHHHHHHHhhcCCEEEEEeccccCcCCCccchhcc--ccCC----CCCceeecC-C-------CCCcee---cCCccCC
Confidence 99999999998 999999999999998875211110 1100 011111000 0 011111 1223457
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHH---HhcCC-CeEEeeecCCCCCCC-C---C-CC-C
Q 014447 172 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP-DFAVGEKWDSLSYGP-D---G-KP-D 241 (424)
Q Consensus 172 ln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~---~~~~p-~~~v~E~~~~~~~~~-~---~-~~-~ 241 (424)
+|++||.||++|++++++|++++||||||||++++++.++|.++. ++..| +++|||.|....... . . .. .
T Consensus 647 ln~~~p~Vr~~i~d~l~~W~~e~gVDGfR~D~a~~~~~~~~~~~~~~l~~~~p~~~ligE~w~~~~~~~~~~a~q~~~~g 726 (1083)
T 2fhf_A 647 SAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQILSAWERIKALNPDIYFFGEGWDSNQSDRFEIASQINLKG 726 (1083)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHTTCTTCEEEECCCCCSCTTTSCBCCTTTTTT
T ss_pred cCcCCHHHHHHHHHHHHHHHHHhCCcEEEEeCcccCCHHHHHHHHHHHHHhCCCeEEEEeeccCccccchhhhhhhhccC
Confidence 899999999999999999999999999999999999999998874 45677 789999997543100 0 0 00 0
Q ss_pred CCCCCchhHHHHHHHhcCCcee--------eecc-----------cchHHH-------HHHhcchhhh----------hh
Q 014447 242 ANQDGHRGALKDWVQAAGGAVA--------AFDF-----------TTKGIL-------QAAVQGELWR----------LK 285 (424)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~--------~~df-----------~~~~~~-------~~~~~~~~~~----------~~ 285 (424)
..-..+...++.-+.....+.. .|.. .....+ .....+.+.. +.
T Consensus 727 ~~ig~fnd~~Rd~vr~~~~F~~g~~l~~~~gf~~G~~~~p~~~~~~~a~rl~~~~d~~~~~~~g~l~~f~~~~~~g~~l~ 806 (1083)
T 2fhf_A 727 TGIGTFSDRLRDAVRGGGPFDSGDALRQNQGVGSGAGVLPNELTTLSDDQARHLADLTRLGMAGNLADFVLIDKDGAVKR 806 (1083)
T ss_dssp SSCEEECHHHHHHHHCSCTTCCTTHHHHCCCGGGTTTTSCCSSCCCCHHHHHHHHHHHHHHHTTCBTTCEEECTTSCEEE
T ss_pred CchhhhhHHHHHHHhccCccccccccccccceeeccccccccchHHHHHHhhchhhhhhhhhhhhhhhhhhccccccccc
Confidence 0000111122222211000000 0000 000000 0000111000 00
Q ss_pred hhcCCCCC---CcCcCCCcceecccCCCCCcCcccCC------C----CchhHHHHHHHHHcCCCeeEEecCCCC-----
Q 014447 286 DSNGKPPG---FIGILPQNAVTFIDNHDTGSTQRLWP------F----PSDKVMLGYAYILTHPGTPCIFYDHFF----- 347 (424)
Q Consensus 286 ~~~~~~~~---~~~~~~~~~~~f~~nHD~~r~~~~~~------~----~~~~~~~a~a~~l~~pG~P~iyyG~~~----- 347 (424)
........ .....|...++|++|||+.|+..... . ..++.++|++++|++||+||||||||+
T Consensus 807 gs~~~y~~~~~~~~~~p~~~infl~nHD~~rL~D~vs~~~~~~~~~~~r~r~~kla~alLlts~GiP~IY~GdEiG~t~~ 886 (1083)
T 2fhf_A 807 GSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWDMISYKAAQEADLDTRVRMQAVSLATVMLGQGIAFDQQGSELLRSKS 886 (1083)
T ss_dssp GGGSEETTEESCCBSSGGGEEECSCCSSSSCHHHHHHHHSCTTCCHHHHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCT
T ss_pred cchhhhcccccccccCccceeeeeccCCcchhhhhhhhhcCCccchHHHHHHHHHHHHHHHHCCCCcEEEeehhcCCcCC
Confidence 00000000 00123456799999999999643221 0 123578999999999999999999863
Q ss_pred ---------------Cc----------------------------------------chHHHHHHHHHHHHhcCCCCCCC
Q 014447 348 ---------------DW----------------------------------------GLKEAISKLAAVRNRNGINTASR 372 (424)
Q Consensus 348 ---------------~w----------------------------------------~l~~~~~~L~~lR~~~~al~~G~ 372 (424)
+| ++++++|+|++||+++|+|+.|.
T Consensus 887 gn~n~Y~~~d~~n~~dW~~~dN~ws~g~p~~~~~~~~W~~~~~~~~~nv~~q~~d~~sl~~f~r~LI~LRk~~paLr~g~ 966 (1083)
T 2fhf_A 887 FTRDSYDSGDWFNRVDYSLQDNNYNVGMPRSSDDGSNYDIIARVKDAVATPGETELKQMTAFYQELTALRKSSPLFTLGD 966 (1083)
T ss_dssp TCSCCTTSHHHHHCCCTTCSCCSCSSSCCCHHHHGGGHHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHHHTSCGGGGCCC
T ss_pred cccCccccccccccccccccCccccccccccccccCCchhccccccccccccccCHHHHHHHHHHHHHHHhhCHHhcCCc
Confidence 22 16889999999999999999998
Q ss_pred e-------EEEecC----CCEEEEEEC-------------CEEEEEECCCCC
Q 014447 373 V-------NILASD----ADVYIAAIG-------------DRVIMKIGPKMD 400 (424)
Q Consensus 373 ~-------~~~~~~----~~v~~~~r~-------------~~~lv~ln~~~~ 400 (424)
+ .++..+ +.+++|.|. ++++|++|.+.+
T Consensus 967 ~~~i~~~v~~~~~~~~~~~~vlaf~R~~~~~~~~~~d~~~~~llVv~N~s~~ 1018 (1083)
T 2fhf_A 967 GATVMKRVDFRNTGADQQTGLLVMTIDDGMQAGASLDSRVDGIVVAINAAPE 1018 (1083)
T ss_dssp HHHHHHHEEEESCSTTCCTTEEEEEEECSTTTSSCSCTTEEEEEEEEECSSS
T ss_pred cccccceEEEecCCCCCCCCEEEEEEcCCCccccccCCCCCEEEEEEeCCCC
Confidence 4 444443 689999982 268899998643
|
| >4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=376.70 Aligned_cols=190 Identities=20% Similarity=0.252 Sum_probs=137.8
Q ss_pred CceEEEeec----C---CCCCCCCCcHHHH-------HhhhhHHHHcCCCEEEeCCCCCCC-------------------
Q 014447 23 PALLFQGFN----W---ESSNKAGGWYNSL-------KNSIPDLSNAGITHVWLPPPSQSV------------------- 69 (424)
Q Consensus 23 ~~v~~~~f~----~---ds~~~~~G~~~gi-------~~~L~ylk~lGv~~I~l~Pi~~~~------------------- 69 (424)
+.|||++.. . +...+..|+|.|+ +++|+|||+||||+||||||++++
T Consensus 252 ~~vIYE~HVr~ft~~~~~~~~~~~Gtf~g~~~~~~~~ie~L~yLk~LGVtaveLmPv~e~~~~~~~~~~~~~~d~~~l~~ 331 (884)
T 4aio_A 252 DITIYELHIRDFSAHDGTVDSDSRGGFRAFAYQASAGMEHLRKLSDAGLTHVHLLPSFHFAGVDDIKSNWKFVDECELAT 331 (884)
T ss_dssp GCCEEEECHHHHHTTCTTSCTTTTTSGGGGSCTTSHHHHHHHHHHHHTCCEEEECCCEEESSSCSCGGGCCCCCHHHHTT
T ss_pred cCEEEEEEcCccccCCCCCCccccCcccccccchhhHHHHhHHHHHcCCCEEEeccccccCccccccccccccccccccc
Confidence 369998752 1 1223457999875 789999999999999999999864
Q ss_pred --------------------CCCCCCcccccCCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCC
Q 014447 70 --------------------APQGYMPGRLYDLDASKYGS-------QADLKSLIQAFRQKGIKCLADMVINHRTAERKD 122 (424)
Q Consensus 70 --------------------~~~gY~~~d~~~id~~~~Gt-------~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~ 122 (424)
.+|||++.+|++++ ++||| .++||+||++||++||+||||+|+|||+.+|+.
T Consensus 332 ~~~~~~~~~~l~~~~~~~~~~~WGYd~~~y~a~~-~~ygt~~d~~~~~~efk~LV~~aH~~GIkVIlDvV~NHts~~h~w 410 (884)
T 4aio_A 332 FPPGSDMQQAAVVAIQEEDPYNWGYNPVLWGVPK-GSYASDPDGPSRIIEYRQMVQALNRIGLRVVMDVVYNHLDSSGPC 410 (884)
T ss_dssp SCTTCSHHHHHHHHHTTTSSCCCCCCEEEEEEEC-GGGSSCSSTTHHHHHHHHHHHHHHHTTCEEEEEECCSBCSCCSSS
T ss_pred cCCchHHHHhhhhhhhhccccccCcCcccccCCC-cccccCccccchHHHHHHHHHHHHhcCCceeeeeccccccCCCcc
Confidence 36999999999999 99999 456999999999999999999999999998863
Q ss_pred CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEec
Q 014447 123 GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD 202 (424)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D 202 (424)
..... +....+ ...|. ....+.+ ....+..++|+++|.|++++++.+++|+++++|||||+|
T Consensus 411 f~~~~--~~~~~~--~~~~~-----------~~~~~~~---~~~~~~~~~~~~~~~v~~~~~d~~~~w~~~~~vDg~R~D 472 (884)
T 4aio_A 411 GISSV--LDKIVP--GYYVR-----------RDTNGQI---ENSAAMNNTASEHFMVDRLIVDDLLNWAVNYKVDGFRFD 472 (884)
T ss_dssp STTCC--HHHHST--TTSBC-----------BCTTSCB---CCTTSSSBBCTTSHHHHHHHHHHHHHHHHHSCCCEEEET
T ss_pred hhhcc--ccccCc--ceeec-----------cCCCCCc---cCcCCccccCCCCchhhhhhhhhhhhhhhhcccccCCcc
Confidence 11100 000000 00000 0000011 122345678999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHh--------c----CCCeEEeeecCC
Q 014447 203 FVKGYAPSITKVYMEN--------T----SPDFAVGEKWDS 231 (424)
Q Consensus 203 ~a~~~~~~~~~~~~~~--------~----~p~~~v~E~~~~ 231 (424)
.+..+..+.+..+... . ....+++|.|..
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~ 513 (884)
T 4aio_A 473 LMGHIMKRTMMRAKSALQSLTTDAHGVDGSKIYLYGEGWDF 513 (884)
T ss_dssp TGGGSBHHHHHHHHHHHHTCCHHHHSSCGGGCEEEECCCCC
T ss_pred cchhhhhHHHHhhhhhcccccccccccccccceecccCCcc
Confidence 9999987655444221 1 124578898754
|
| >1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-41 Score=345.46 Aligned_cols=187 Identities=15% Similarity=0.143 Sum_probs=141.9
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+|||+|++++|+|||+|||++|||+||+++. ++|||++.||++|| |+|||++||++||++||++||+||+|+|+||+
T Consensus 13 gGtf~gi~~~LdYLk~LGVtaIwLsPi~~~~~gs~hGYdv~Dy~~Id-p~lGt~edfk~LV~aaH~~GIkVIlDvV~NHt 91 (720)
T 1iv8_A 13 NFNFGDVIDNLWYFXDLGVSHLYLSPVLMASPGSNHGYDVIDHSRIN-DELGGEKEYRRLIETAHTIGLGIIQDIVPNHM 91 (720)
T ss_dssp TBCHHHHHHTHHHHHHHTCCEEEECCCEEECTTCSSCCSEEEEEEEC-TTTTHHHHHHHHHHHHHHTTCEEEEEECCSEE
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEECCcccCCCCCCCCCCCccCCCcC-ccCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 7999999999999999999999999999974 68999999999999 99999999999999999999999999999999
Q ss_pred C--CCCC-----------CCCcceeecCCC--C---CC-C-C---------C--CCC---------Cccccc-CC-----
Q 014447 117 T--AERK-----------DGRGIYCIFEGG--T---SD-D-R---------L--DWG---------PSFICR-GD----- 150 (424)
Q Consensus 117 ~--~~~~-----------~~~~~~~~~~~~--~---~~-~-~---------~--~w~---------~~~~~~-~~----- 150 (424)
+ .+|+ ++..+|+.+... + |. . + . .|. .+.+.. ..
T Consensus 92 a~~~~~~wf~d~l~~G~~s~y~d~f~~~~~~g~~~~P~~g~~yg~~l~~g~l~~~~d~g~~~~~Yy~~~fp~~~~~~~l~ 171 (720)
T 1iv8_A 92 AVNSLNWRLMDVLXMGXXSXYYTYFDFFPEDDKIRLPILGEDLDTVISKGLLKIVKDGDEYFLEYFKWKLPLTEVGNDIY 171 (720)
T ss_dssp ECCTTCHHHHHHHHHGGGSTTGGGBCBCTTCSSEEEEEESSCHHHHHHTTCEEEEECSSCEEEEETTEEEECSCCCSSHH
T ss_pred cCccccHHHHHhhhcccccccccceeecCCCCcccCCcccccccccccccceeeeecCCCcchhhccccCCcCccccchh
Confidence 9 5542 112233333210 0 00 0 0 0 000 000000 00
Q ss_pred ----------CccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC--CHHHHHHHHHh
Q 014447 151 ----------KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY--APSITKVYMEN 218 (424)
Q Consensus 151 ----------~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~--~~~~~~~~~~~ 218 (424)
..|... .+|.....+.++++||++||+|++++.+++++| ||||||+|+++++ +.+||+.+.+.
T Consensus 172 ~~~~~q~yrl~~W~~~-lNyr~f~d~~~L~dLn~enP~V~~~i~d~l~~W----GVDGFRiDaa~~L~~p~~f~~~lr~~ 246 (720)
T 1iv8_A 172 DTLQKQNYTLMSWKNP-PSYRRFFDVNTLIGVNVEXDHVFQESHSXILDL----DVDGYRIDHIDGLYDPEKYINDLRSI 246 (720)
T ss_dssp HHHTTSSEEEEETTSC-CSBCEETTEEEEEEBCTTSHHHHHHHTTTGGGS----CCSEEEETTGGGCSCHHHHHHHHHHH
T ss_pred hhhhccceeccccccc-ccccccccccCCcccccCcHHHHHHHHHHHHhc----CCCEEEEechhhhcChHHHHHHHHHH
Confidence 001000 233333344678999999999999999999999 9999999999999 78999999887
Q ss_pred cCCCeEEeeecCC
Q 014447 219 TSPDFAVGEKWDS 231 (424)
Q Consensus 219 ~~p~~~v~E~~~~ 231 (424)
.+|.++|||.|..
T Consensus 247 v~p~~ligE~~~~ 259 (720)
T 1iv8_A 247 IKNXIIIVEKILG 259 (720)
T ss_dssp HTTCEEEECCCCC
T ss_pred hccceEEeeccCC
Confidence 7787799999965
|
| >3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-32 Score=279.12 Aligned_cols=187 Identities=16% Similarity=0.204 Sum_probs=143.9
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+|||++++++|+||++|||++|||+||+++. ++|||++.||++|| |+|||++||++||++||++||+||+|+|+||+
T Consensus 11 gGtf~~i~~~LdyL~~LGvt~V~LsPi~e~~~~s~~GYd~~Dy~~vd-p~lGt~edfk~LV~~aH~~GI~VilDvV~NH~ 89 (704)
T 3hje_A 11 PMKFSEIRNRLDYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNTIN-DELGGEEEYIRLIDEAKSKGLGIIQDIVPNHM 89 (704)
T ss_dssp SCCHHHHHTTHHHHHHHTCSEEEECCCEEESTTCSSSCSEEEEEEEC-GGGTHHHHHHHHHHHHHHHTCEEEEEECCSEE
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCccCCCCCCCCCCCcCCCCcC-ccCCCHHHHHHHHHHHHHCCCEEEEeeccccc
Confidence 6999999999999999999999999999974 68999999999999 99999999999999999999999999999999
Q ss_pred CC--CCC-----------CCCcceeecCCC--CCC----CCCCCCCcc--------------cccCC-------------
Q 014447 117 TA--ERK-----------DGRGIYCIFEGG--TSD----DRLDWGPSF--------------ICRGD------------- 150 (424)
Q Consensus 117 ~~--~~~-----------~~~~~~~~~~~~--~~~----~~~~w~~~~--------------~~~~~------------- 150 (424)
+. +|+ ++..+|+.|... +.. ...+|.... .....
T Consensus 90 s~~~~~~wf~d~l~~g~~s~Y~d~F~W~~~~g~v~~P~lg~~~~~y~~~l~~G~i~lY~d~~Pl~p~~~~~~~~l~~l~~ 169 (704)
T 3hje_A 90 AVHHTNWRLMDVLKKGRHSRYYNYFDFYEEEEKIRIPILGDRNFKITYVNDEPYLDYYGNLFPINDEGRNYLNDIEKLLK 169 (704)
T ss_dssp ECSTTCHHHHHHHHHGGGSGGGGGBCBCTTCSSEEEEEESSCCCEEEEETTEEEEEETTEEEECCTTGGGCTTCHHHHHH
T ss_pred ccccchHHHHHHHhcCCCCCCCccccccCCCCceecCcCCCCcccccccccCCceeeccccCCCCcccccccchhhhhhh
Confidence 87 332 122334433210 000 011110000 00000
Q ss_pred ------CccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC--CHHHHHHHHHhcCCC
Q 014447 151 ------KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY--APSITKVYMENTSPD 222 (424)
Q Consensus 151 ------~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~--~~~~~~~~~~~~~p~ 222 (424)
..|... .+|...+...++++||++||+|++++.+.+.+| ||||||+|+++++ |..+|+.+.+...+.
T Consensus 170 ~Q~Yrl~~w~~~-~nyrRff~l~~L~dLn~e~p~V~~~i~~~L~~L----GVdGFRvDaadgL~DP~~yl~rLr~~~~~~ 244 (704)
T 3hje_A 170 VQYYELVDWRDY-PSYRRFFAVNELIAVRQELEWVFEDSHSKILSF----EVDGYRIDHIDGLFKPEEYLRRLKNKIGNK 244 (704)
T ss_dssp TSSEEEEETTSC-CSBCEETTEEEEEEBCTTSHHHHHHHHTTGGGS----CCSEEEETTGGGCSSHHHHHHHHHHHHTTC
T ss_pred hhhhhhcccccc-cccccccccCCchhccCCCHHHHHHHHHHHHHc----CCCEEEEeCcCcccCHHHHHHHHHHhCCCc
Confidence 011111 355555666788899999999999999999999 9999999999999 889999997666668
Q ss_pred eEEeeecCC
Q 014447 223 FAVGEKWDS 231 (424)
Q Consensus 223 ~~v~E~~~~ 231 (424)
++++|+...
T Consensus 245 ~iv~EkIl~ 253 (704)
T 3hje_A 245 HIFVEKILS 253 (704)
T ss_dssp EEEECCCCC
T ss_pred EEEEEEeCC
Confidence 999999854
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-28 Score=256.82 Aligned_cols=206 Identities=20% Similarity=0.309 Sum_probs=147.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---------hcCCCeEEecccCCCCHHHHHHHHH---hc--C--------
Q 014447 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWRFDFVKGYAPSITKVYME---NT--S-------- 220 (424)
Q Consensus 163 ~~~~~~~~dln~~np~v~~~l~~~~~~w~~---------~~gvDGfR~D~a~~~~~~~~~~~~~---~~--~-------- 220 (424)
++.+..+||||++||+||++|+++++||++ ++||||||+|+|++++.+||+++.+ +. .
T Consensus 186 ~y~l~~~~DLN~~NP~Vr~~l~~~~~~Wl~~~~i~~~~~~~GIDGFRlDAvkhv~~df~~~~~~~l~~~~~~~~~~~~~~ 265 (844)
T 3aie_A 186 GYEFLLANDVDNSNPVVQAEQLNWLHFLMNFGNIYANDPDANFDSIRVDAVDNVDADLLQIAGDYLKAAKGIHKNDKAAN 265 (844)
T ss_dssp CCSCCSSEEECTTSHHHHHHHHHHHHHHHTHHHHHHSCTTSCCCEEEETTGGGSCTHHHHHHHHHHHHHHCTTTBHHHHH
T ss_pred ceeeCCccccCCCCHHHHHHHHHHHHHHhhccccccccccCCCCEEEEehhhcCCHHHHHHHHHHHHHHhcccccccccC
Confidence 446677799999999999999999999998 8999999999999999999999844 22 2
Q ss_pred CCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhc------chhhhhhhh-cCC-CC
Q 014447 221 PDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ------GELWRLKDS-NGK-PP 292 (424)
Q Consensus 221 p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~------~~~~~~~~~-~~~-~~ 292 (424)
+.|+|||+|.. .. ..|+...++..++|||+++..+...+. +++..+... ... .+
T Consensus 266 d~~~VGEvw~~-----------------~~-~~Y~~~~~~~~~vfDFpl~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~p 327 (844)
T 3aie_A 266 DHLSILEAWSY-----------------ND-TPYLHDDGDNMINMDNRLRLSLLYSLAKPLNQRSGMNPLITNSLVNRTD 327 (844)
T ss_dssp TSCCEECCCST-----------------TH-HHHHHHHTSSSBEECHHHHHHHHHHTTSCGGGCCCSTHHHHSSSSCCSE
T ss_pred CeEEEEecCCC-----------------Ch-HHHhhcCCCcceeeChHHHHHHHHHHHhhccCHHhHHHHHHHHHHhhCc
Confidence 36899999963 11 577776667888999999877775542 233344332 110 00
Q ss_pred CCcCcCCCcceecccCCCCCcC---ccc-----------CCCCc-----------------------hhHHHHHHHHHcC
Q 014447 293 GFIGILPQNAVTFIDNHDTGST---QRL-----------WPFPS-----------------------DKVMLGYAYILTH 335 (424)
Q Consensus 293 ~~~~~~~~~~~~f~~nHD~~r~---~~~-----------~~~~~-----------------------~~~~~a~a~~l~~ 335 (424)
..........++|++|||++|. .+. ..+.. .+.++|+|++|++
T Consensus 328 ~~~~~~~~~~~tFldNHDt~R~~Ri~s~l~~~~~~~~~g~~~~~d~~~~~le~~~~~~~~~~k~y~~~~~~lA~AllLt~ 407 (844)
T 3aie_A 328 DNAETAAVPSYSFIRAHDSEVQDLIRDIIKAEINPNVVGYSFTMEEIKKAFEIYNKDLLATEKKYTHYNTALSYALLLTN 407 (844)
T ss_dssp ECCSSCSSCEEECSCCSSTTTHHHHHHHHHHHTCTTCCTTCCCHHHHHHHHHHHHHHHHCSSCSSSCSCHHHHHHHHTTC
T ss_pred ccccccceeeEEEeeCCcCCCccchhhhhccccccccccccccchhhhhhhhhhhhhhhccccccchhHHHHHHHHHHHh
Confidence 1000001125789999999985 210 01111 0157799999999
Q ss_pred C-CeeEEecCCCCCc---------chHHHHHHHHHHHHhcCCCCCCCeE---EEecCCCEEEEEECC
Q 014447 336 P-GTPCIFYDHFFDW---------GLKEAISKLAAVRNRNGINTASRVN---ILASDADVYIAAIGD 389 (424)
Q Consensus 336 p-G~P~iyyG~~~~w---------~l~~~~~~L~~lR~~~~al~~G~~~---~~~~~~~v~~~~r~~ 389 (424)
| |+|+||||+|++. .+.+.|++|+++|+.++. |... ....++++++|.|.+
T Consensus 408 ~~GiP~IYYGdEiGm~G~~~~~~~~~~d~I~~L~~~Rk~~~~---G~q~~~~~~~~~~~vla~~R~g 471 (844)
T 3aie_A 408 KSSVPRVYYGDMFTDDGQYMAHKTINYEAIETLLKARIKYVS---GGQAMRNQQVGNSEIITSVRYG 471 (844)
T ss_dssp SSSEEEEEHHHHBCSSSSTTCSBCTTHHHHHHHHHHHHHHCC---SCEEEEEEEETTEEEEEEEECC
T ss_pred CCCCceEEeccccCCCCCCCCCcHHHHHHHHHHHHHHHHhhh---CCcccceeccCcccceEEEEec
Confidence 8 9999999998764 478999999999999753 4433 123557899999843
|
| >3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-26 Score=242.68 Aligned_cols=211 Identities=19% Similarity=0.300 Sum_probs=152.8
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---------hcCCCeEEecccCCCCHHHHHHHHHhc---C-----
Q 014447 158 GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWRFDFVKGYAPSITKVYMENT---S----- 220 (424)
Q Consensus 158 ~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~---------~~gvDGfR~D~a~~~~~~~~~~~~~~~---~----- 220 (424)
+....++.+..+||||++||+||++|+++++||++ ++||||||+|+|+|++++||++++++. .
T Consensus 233 g~~~g~~d~l~l~DLN~~NPeVr~el~~~~~~Wld~g~w~~~~~e~GVDGFRLDAVkhI~~dFl~ef~~~l~~~~~~~~~ 312 (1039)
T 3klk_A 233 GKNYGGAEFLLANDIDNSNPVVQAEELNWLYYLMNFGTITGNNPEANFDGIRVDAVDNVDVDLLSIARDYFNAAYNMEQS 312 (1039)
T ss_dssp SSSCCSCSCCSSEEECTTSHHHHHHHHHHHHHHHTHHHHHHSCTTSSCCEEEETTGGGSCTHHHHHHHHHHHHHHCGGGC
T ss_pred CcccCCcccccccccCCCCHHHHHHHHHHHHHHHhhccccccccccCCCEEEEehhhcCCHHHHHHHHHHHHHHhccccc
Confidence 33456778899999999999999999999999998 899999999999999999999985432 1
Q ss_pred -----CCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch------hhhhhhhc-
Q 014447 221 -----PDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE------LWRLKDSN- 288 (424)
Q Consensus 221 -----p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~------~~~~~~~~- 288 (424)
+.++|||+|.. ....|+...++..+++||+++..+..++... +..+....
T Consensus 313 ~~~a~d~f~VGEvw~~------------------~~~~Yl~~~~~~~s~~Dfpl~~~l~~a~~~~~~~~~dL~~l~~~~l 374 (1039)
T 3klk_A 313 DASANKHINILEDWGW------------------DDPAYVNKIGNPQLTMDDRLRNAIMDTLSGAPDKNQALNKLITQSL 374 (1039)
T ss_dssp HHHHTTSCCEECCCCT------------------THHHHHHHTTCSSBEECHHHHHHHHHHTSSCTTTCCCTTHHHHSSS
T ss_pred ccccCCeEEEEecCCC------------------CHHHHHhccCCccceechHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 26799999963 1247877766677889999988888776322 22333220
Q ss_pred C-CCCCCcCcCCCcceecccCCCCCcC---ccc---------CC-----------------------CCchhHHHHHHHH
Q 014447 289 G-KPPGFIGILPQNAVTFIDNHDTGST---QRL---------WP-----------------------FPSDKVMLGYAYI 332 (424)
Q Consensus 289 ~-~~~~~~~~~~~~~~~f~~nHD~~r~---~~~---------~~-----------------------~~~~~~~~a~a~~ 332 (424)
. ..+..........++|++|||++|. ... .. .......+|+|++
T Consensus 375 ~~~~~~~a~~~~~~~vtFVdNHDt~R~~~i~~~is~~~~~~~l~~t~~~~~~al~~y~~d~~~~~k~y~~~~k~lAyAll 454 (1039)
T 3klk_A 375 VNRANDNTENAVIPSYNFVRAHDSNAQDQIRQAIQAATGKPYGEFNLDDEKKGMEAYINDQNSTNKKWNLYNMPSAYTIL 454 (1039)
T ss_dssp SCCTEECCSSCSCCEEEESCBTTBTTHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHHTSSSCSSSCSCHHHHHHHH
T ss_pred HhcCCccccccccccceEeeCCcCCCcccccccccccccccccccchhhhhhhhhhhcccccccchhhhhhhHHHHHHHH
Confidence 0 0000000011245899999999983 000 00 0011256788888
Q ss_pred HcC-CCeeEEecCCCCCc---------chHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEECC
Q 014447 333 LTH-PGTPCIFYDHFFDW---------GLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGD 389 (424)
Q Consensus 333 l~~-pG~P~iyyG~~~~w---------~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r~~ 389 (424)
|++ ||+|+|||||+++. .+.+.|++|+++|+++. .|.......++++++|.|.+
T Consensus 455 Ll~~~GtP~IYYGDeyG~~G~~~~~~~p~~~~I~~Ll~aRk~ya---~G~Q~d~~d~~~vi~~vR~G 518 (1039)
T 3klk_A 455 LTNKDSVPRVYYGDLYQDGGQYMEHKTRYFDTITNLLKTRVKYV---AGGQTMSVDKNGILTNVRFG 518 (1039)
T ss_dssp HHCSSCEEEEEHHHHBCSSBSTTCSBCTTHHHHHHHHHHHHHHC---CSCEEEEECTTSCEEEEECC
T ss_pred HHcCCCeEEEEechhcCCCCCCCcCCCcHHHHHHHHHHHHHHhc---cCCeeEeecCCCEEEEEEeC
Confidence 776 89999999998764 36889999999999974 46666666889999999933
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.2e-23 Score=215.50 Aligned_cols=99 Identities=28% Similarity=0.470 Sum_probs=86.8
Q ss_pred CCCCceEEEeec-CCCCCCCCCcH--HHHHhhhhHHHHcCCCEEEeCCCCCCCC---------CCCCCcccccCCC---C
Q 014447 20 FTSPALLFQGFN-WESSNKAGGWY--NSLKNSIPDLSNAGITHVWLPPPSQSVA---------PQGYMPGRLYDLD---A 84 (424)
Q Consensus 20 ~~~~~v~~~~f~-~ds~~~~~G~~--~gi~~~L~ylk~lGv~~I~l~Pi~~~~~---------~~gY~~~d~~~id---~ 84 (424)
+.+..||||+|. |.++.+.+|.+ +||+++|+|||+||||+|||+||++++. +|||++.||++|+ +
T Consensus 607 ~~~~~ViYe~f~~~~s~~~~g~~~~~~gi~~~l~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~GY~~~d~~~i~es~~ 686 (844)
T 3aie_A 607 ALDSRVMFEGFSNFQAFATKKEEYTNVVIAKNVDKFAEWGVTDFEMAPQYVSSTDGSFLDSVIQNGYAFTDRYDLGISKP 686 (844)
T ss_dssp HHHTCCEEECCCTTCCCCSSGGGCHHHHHHHTHHHHHHTTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSCSSC
T ss_pred ccCceEEEEeCCCcccCCCCCCcccHHHHHHHHHHHHHCCCCeEEECCcccCCCCCccccccCCCCCccccCccCCCCCC
Confidence 345579999998 66665444434 9999999999999999999999999773 6999999999998 2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
|+|||++||++||++||++||+||||+|+||++.
T Consensus 687 ~~~Gt~~df~~lv~~~H~~GI~VilD~V~NH~~~ 720 (844)
T 3aie_A 687 NKYGTADDLVKAIKALHSKGIKVMADWVPDQMYA 720 (844)
T ss_dssp BTTBCHHHHHHHHHHHHHTTCEEEEEECCSEECC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEccCcccC
Confidence 6999999999999999999999999999999974
|
| >3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-22 Score=212.24 Aligned_cols=96 Identities=26% Similarity=0.377 Sum_probs=86.9
Q ss_pred CceEEEeecCCCCCCC---CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC---------CCCCCcccccC----CCCCC
Q 014447 23 PALLFQGFNWESSNKA---GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---------PQGYMPGRLYD----LDASK 86 (424)
Q Consensus 23 ~~v~~~~f~~ds~~~~---~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~---------~~gY~~~d~~~----id~~~ 86 (424)
..||||.|.|++..++ .+++.+|+++|||||+|||++|||+||++++. ++||++.|++. |+ |+
T Consensus 830 s~Vi~QgF~W~~~~~g~~w~~Ty~~I~~kLdYLk~LGITaIwL~Pi~~s~~~~~~~~~~~d~GYdi~D~y~lGf~i~-~~ 908 (1108)
T 3ttq_A 830 SNLIYEGFSNFQPKATTHDELTNVVIAKNADVFNNWGITSFEMAPQYRSSGDHTFLDSTIDNGYAFTDRYDLGFNTP-TK 908 (1108)
T ss_dssp TCCEEECCCTTCCCCSSGGGSHHHHHHHTHHHHHHHTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSSSSC-CS
T ss_pred CceEEEeEECCCCCCCCccchhHHHHHHHHHHHHHcCCCEEEECCCccCCCccccccccccCCcccccccccCcCCC-CC
Confidence 3699999999988764 24566999999999999999999999999762 78999999988 69 99
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 87 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 87 ~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
|||++||++||++||++||+||||+|+||++..
T Consensus 909 yGt~edfk~LV~alH~~GI~VIlDvV~NHta~~ 941 (1108)
T 3ttq_A 909 YGTDGDLRATIQALHHANMQVMADVVDNQVYNL 941 (1108)
T ss_dssp SCCHHHHHHHHHHHHHTTCEEEEEECCSEECCC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEeccccccCC
Confidence 999999999999999999999999999999743
|
| >3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-21 Score=208.14 Aligned_cols=97 Identities=25% Similarity=0.355 Sum_probs=85.9
Q ss_pred CCceEEEeecC-CCCC--CCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC---------CCCCCCcccccC----CCCC
Q 014447 22 SPALLFQGFNW-ESSN--KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV---------APQGYMPGRLYD----LDAS 85 (424)
Q Consensus 22 ~~~v~~~~f~~-ds~~--~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~---------~~~gY~~~d~~~----id~~ 85 (424)
.++|||+.|.+ .+.. ...|+|++|+++|+|||+||||+||||||++++ .++||++.||+. ++ |
T Consensus 662 ~~~VIYEGFt~~~~~~~~~~~gt~~gi~~kldyLk~LGVtaIwL~Pi~~~~~~~~~~~~~~~~GYd~~d~~~~~~~i~-~ 740 (1039)
T 3klk_A 662 DSNVIYEGFSNFIYWPTTESERTNVRIAQNADLFKSWGITTFELAPQYNSSKDGTFLDSIIDNGYAFTDRYDLGMSTP-N 740 (1039)
T ss_dssp HTCCEEECCCTTBCCCSSGGGCHHHHHHHTHHHHHHTTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSCSSC-B
T ss_pred CCcEEEccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECccccCCcccccccCcCCCCCCcccccccccCCC-C
Confidence 45799999953 2222 236999999999999999999999999999985 689999999995 78 9
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 86 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 86 ~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
+|||++||++||++||++||+||||+|+||++..
T Consensus 741 ~~Gt~~efk~lV~alH~~GI~VIlDvV~NHta~~ 774 (1039)
T 3klk_A 741 KYGSDEDLRNALQALHKAGLQAIADWVPDQIYNL 774 (1039)
T ss_dssp TTBCHHHHHHHHHHHHHTTCEEEEEECCSEECCC
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEccCCcCCC
Confidence 9999999999999999999999999999999754
|
| >3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.5e-14 Score=146.94 Aligned_cols=200 Identities=18% Similarity=0.211 Sum_probs=137.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHH---------HhcCCCeEEecccCCCCHHHHHHHH---Hhc----------C
Q 014447 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLK---------TEIGFDGWRFDFVKGYAPSITKVYM---ENT----------S 220 (424)
Q Consensus 163 ~~~~~~~~dln~~np~v~~~l~~~~~~w~---------~~~gvDGfR~D~a~~~~~~~~~~~~---~~~----------~ 220 (424)
+..+--..|+|.+||.|++++++++.|++ ++.+.||||+|||+++..+|++.+. ++. .
T Consensus 405 ~ye~Ll~nDvDnsnP~Vqae~lnw~~~l~n~g~i~~~~~~~nfdG~RvDAvdnvdad~l~~~~~~~~~~yg~~~~~~~a~ 484 (1108)
T 3ttq_A 405 AFDFLLANDVDNSNPVVQAENLNWLHYLMNFGTITAGQDDANFDSIRIDAVDFIHNDTIQRTYDYLRDAYQVQQSEAKAN 484 (1108)
T ss_dssp SCCCCSSEEECTTSHHHHHHHHHHHHHHHTHHHHHHSCTTSSCCEEEETTGGGSCHHHHHHHHHHHHHHHCTTSBHHHHT
T ss_pred CeeeEeecccccCChHHHHHHHHHHHHHhhcccccccCCCCCCceEEEechhccCHHHHHHHHHHHHHHhCCCccchhhh
Confidence 44566677899999999999999999999 8899999999999999999988762 221 3
Q ss_pred CCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc------hhhhhhhh------c
Q 014447 221 PDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG------ELWRLKDS------N 288 (424)
Q Consensus 221 p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~------~~~~~~~~------~ 288 (424)
..|.|+|.|... ...|+. ....||++++..+...+.. .+.++.+. .
T Consensus 485 ~h~si~E~W~~~------------------~~~~~~----~~~l~D~~l~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~l 542 (1108)
T 3ttq_A 485 QHISLVEAGLDA------------------GTSTIH----NDALIESNLREAATLSLTNEPGKNKPLTNMLQDVDGGTLI 542 (1108)
T ss_dssp TSCCEESCSTTC------------------HHHHTT----TCSBEECSHHHHHHHHTSSCTTSCCCGGGGSEEEETTEEE
T ss_pred cceEEEeeccCC------------------cchhcc----CccccchHHHHHHHHHhcCcccccccHHHHhhccccccee
Confidence 468899999531 123443 1223888888777654422 13333221 0
Q ss_pred -CCCCCCcCcCCCcceecccCCCCCc-----------Cc-ccCCC-----------------------CchhHHHHHHHH
Q 014447 289 -GKPPGFIGILPQNAVTFIDNHDTGS-----------TQ-RLWPF-----------------------PSDKVMLGYAYI 332 (424)
Q Consensus 289 -~~~~~~~~~~~~~~~~f~~nHD~~r-----------~~-~~~~~-----------------------~~~~~~~a~a~~ 332 (424)
.+.+......+...++|+.|||++- .. ....+ ..-.+-+|+|++
T Consensus 543 v~r~~~~~~~~a~pn~sFV~aHDs~~q~~i~~ii~~~~~~~~~~~t~~~~~qa~~~y~~d~~~~~k~y~~~~~PlAYAlI 622 (1108)
T 3ttq_A 543 TDHTQNSTENQATPNYSIIHAHDKGVQEKVGAAITDATGADWTNFTDEQLKAGLELFYKDQRATNKKYNSYNIPSIYALM 622 (1108)
T ss_dssp EECTEECCSSCSCCEEECSCCSSTTTHHHHHHHHHHHSCCBTTBCCHHHHHHHHHHHHHHHTSSSCSSSCSCHHHHHHHH
T ss_pred eccccccccCccccceEEEecccchhhhhHHHHHhhcccccccccCHHHHHHHHHhhhhhhhhhhhcccccccHHHHHHH
Confidence 0111111112344589999999851 00 00011 112345899999
Q ss_pred HcC-CCeeEEecCCCCCc---------chHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEE
Q 014447 333 LTH-PGTPCIFYDHFFDW---------GLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAI 387 (424)
Q Consensus 333 l~~-pG~P~iyyG~~~~w---------~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r 387 (424)
|+- .|+|||||||.++- ...+-+.+|++.|+.+. .|.......+++++.|.|
T Consensus 623 Llrk~g~PcVfygDlY~~~g~~m~~~~~~~~~i~~Ll~AR~~ya---~G~Q~~~~d~~~~i~~vR 684 (1108)
T 3ttq_A 623 LTNKDTVPRMYYGDMYQDDGQYMANKSIYYDALVSLMTARKSYV---SGGQTMSVDNHGLLKSVR 684 (1108)
T ss_dssp HHCSSCEEEEEGGGTBCTTSSTTTSBCTTHHHHHHHHHHHHHHC---CSCEEEEECTTSCEEEEE
T ss_pred HhccCCcceeeehhhcCCCCcccCCCCcchhHHHHHHHHHHHhc---CCCcccccCCCCEEEEEe
Confidence 998 59999999997654 24688999999999975 566666677889999999
|
| >3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.5e-06 Score=87.97 Aligned_cols=139 Identities=15% Similarity=0.064 Sum_probs=91.7
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCC-CCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ-GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~-gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
|-+.+.+.++.++++|+..+.|=--+...... --...|+ .+|+.+|- +.|+.||+++|++||++.+-+.+..++.+
T Consensus 345 tee~il~~ad~~~~~G~e~fviDDGW~~~r~~d~~~~Gdw-~~d~~kFP--~Gl~~lv~~ih~~Glk~glW~~Pe~v~~d 421 (745)
T 3mi6_A 345 NEAKLMTIVNQAKRLGIEMFVLDDGWFGHRDDDTTSLGDW-FVDQRKFP--DGIEHFSQAVHQQGMKFGLWFEPEMVSVD 421 (745)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECTTCBTTCSSTTSCTTCC-SBCTTTCT--THHHHHHHHHHHTTCEEEEEECTTEECSS
T ss_pred CHHHHHHHHHHHHHcCCcEEEECcccccCCCCCcccCCCc-eeChhhcC--ccHHHHHHHHHHCCCEEEEEEcccccCCC
Confidence 46778888899999999999885544322111 1122333 34523454 36999999999999999999999877766
Q ss_pred CCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeE
Q 014447 120 RKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGW 199 (424)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGf 199 (424)
++.... .++|.-... + + .. .....+.-||+.||+|++++.+.+..+++++|||||
T Consensus 422 S~l~~~------------hPdw~l~~~--~------g--~~---~~~r~~~vLD~tnPevr~~i~~~l~~ll~~~GIDy~ 476 (745)
T 3mi6_A 422 SDLYQQ------------HPDWLIHAP--K------S--TP---TPGRHQFVLDMARPEVVDYLFKLMSQMIESANLDYI 476 (745)
T ss_dssp SSHHHH------------CGGGBCCCT--T------C--CC---CCSSSCEEBCTTCHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred CHHHHh------------CcceEEEcC--C------C--ce---eecCCeEEECCCCHHHHHHHHHHHHHHHHHCCCCEE
Confidence 531100 012221100 0 0 00 011234459999999999999999988877999999
Q ss_pred EecccCCC
Q 014447 200 RFDFVKGY 207 (424)
Q Consensus 200 R~D~a~~~ 207 (424)
.+|+-..+
T Consensus 477 K~D~nr~i 484 (745)
T 3mi6_A 477 KWDMNRYA 484 (745)
T ss_dssp EECCCSCC
T ss_pred EECCCCCC
Confidence 99985443
|
| >2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.5e-06 Score=91.44 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=89.3
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
|-+.+++.++.+|++|++.|.|=--+.... .+--...|+. +|+.+|. +.++.|++++|++|||+.+-+.+..++.+
T Consensus 344 ~e~~i~~~ad~~~~~G~~~~viDDgW~~~r~~~~~~~Gdw~-~d~~kFP--~Glk~lvd~ih~~Glk~GlW~~P~~v~~~ 420 (720)
T 2yfo_A 344 TGDTIVDLAKEAASLGIDMVVMDDGWFGKRNDDNSSLGDWQ-VNETKLG--GSLAELITRVHEQGMKFGIWIEPEMINED 420 (720)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECSSSBTTCSSTTSCTTCCS-BCHHHHT--SCHHHHHHHHHHTTCEEEEEECTTEECSS
T ss_pred CHHHHHHHHHHHHHcCCcEEEECcccccCCCcccccCCCCe-eChhhcC--ccHHHHHHHHHHCCCEEEEEecccccCCC
Confidence 467788899999999999998864442211 1111112332 4511343 24999999999999999999999877665
Q ss_pred CCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeE
Q 014447 120 RKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGW 199 (424)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGf 199 (424)
++.... .++|.-... + + .. ..+..+.-||+.||+|++++.+.+..++++.|||+|
T Consensus 421 S~l~~~------------hpdw~~~~~--~------~--~~---~~~~~~~~LD~t~Pea~~~~~~~l~~l~~~~GIDy~ 475 (720)
T 2yfo_A 421 SDLYRA------------HPDWAIRIQ--G------K--KP---VRSRNQLLLDFSRKEVRDCVFDQICVVLDQGKIDYV 475 (720)
T ss_dssp SHHHHH------------CGGGBCCCT--T------S--CC---CCBTTBEEBCTTSHHHHHHHHHHHHHHHTTSCCCEE
T ss_pred CHHHHh------------CcceEEECC--C------c--Cc---ccCCceEEECCCCHHHHHHHHHHHHHHHHHcCCCEE
Confidence 431000 112221100 0 0 00 001233449999999999999999998878999999
Q ss_pred EecccCC
Q 014447 200 RFDFVKG 206 (424)
Q Consensus 200 R~D~a~~ 206 (424)
.+|....
T Consensus 476 K~D~n~~ 482 (720)
T 2yfo_A 476 KWDMNRS 482 (720)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 9998543
|
| >4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00028 Score=74.43 Aligned_cols=139 Identities=12% Similarity=0.046 Sum_probs=86.2
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCC-cccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM-PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~-~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
|-+.+++.++.+|++|+..+.|===+-.......+ ..| -.+|+.+|- ..|+.|++.+|++|||.-+=+-+--++.+
T Consensus 344 ~e~~i~~~ad~aa~lG~e~fviDDGWf~~r~~d~~~lGd-W~~d~~kFP--~Glk~Lad~vh~~GmkfGLW~epe~v~~~ 420 (729)
T 4fnq_A 344 NEEKLVNIAKTEAELGIELFVLDDGWFGKRDDDRRSLGD-WIVNRRKLP--NGLDGLAKQVNELGMQFGLWVEPEMVSPN 420 (729)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECSCCBTTCCSTTSCTTC-CSBCTTTCT--THHHHHHHHHHHTTCEEEEEECTTEECSS
T ss_pred CHHHHHHHHHHHHhcCccEEEEcceeecCCCCCcccCCc-EEEChhhcC--ccHHHHHHHHHHCCCEEEEEeeccccCCC
Confidence 45678888899999999999984322221111111 122 234534453 37999999999999999988766544433
Q ss_pred CCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeE
Q 014447 120 RKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGW 199 (424)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGf 199 (424)
++. +. ..++|........ ......+-.||+.+|+|++++.+.+...+++.|||.|
T Consensus 421 S~l-------~~-----~hPdw~~~~~~~~-------------~~~~r~q~~LD~~~P~v~~y~~~~i~~ll~~~GidYi 475 (729)
T 4fnq_A 421 SEL-------YR-----KHPDWCLHVPNRP-------------RSEGRNQLVLDYSREDVCDYIIETISNVLASAPITYV 475 (729)
T ss_dssp SHH-------HH-----HCGGGBCCCTTSC-------------CCCBTTBEEBCTTSHHHHHHHHHHHHHHHTTTTCCEE
T ss_pred cHH-------HH-----hCchheeccCccC-------------CccCCccccccCCChhHHHHHHHHHHHHHHHCCCCEE
Confidence 320 00 0112211110000 0011223349999999999999999988888999999
Q ss_pred EecccCCC
Q 014447 200 RFDFVKGY 207 (424)
Q Consensus 200 R~D~a~~~ 207 (424)
.+|....+
T Consensus 476 K~D~n~~~ 483 (729)
T 4fnq_A 476 KWDMNRHM 483 (729)
T ss_dssp EEECCCCC
T ss_pred EEcCCCCC
Confidence 99985443
|
| >2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=4.1e-05 Score=80.68 Aligned_cols=137 Identities=12% Similarity=0.069 Sum_probs=87.9
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
|-+.+.+.++.++++|++.|.|==-+... ..+.-...|+ .+|+.+|.+ .++.|++.+|++|||+.+-+.+..++.+
T Consensus 348 ~ee~v~~~ad~~~~~G~~~~viDDGW~~~r~~~~~~~Gd~-~~d~~kFP~--Glk~lv~~ih~~Glk~GlW~~P~~v~~~ 424 (732)
T 2xn2_A 348 NEDKLKTIVDKAKKLGLEMFVLDDGWFGHRDDDNSSLGDW-KVYKKKFPN--GLGHFADYVHEQGLKFGLWFEPEMISYE 424 (732)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECSSSBTTCSSTTSCTTCC-SBCTTTCTT--CHHHHHHHHHHTTCEEEEEECTTEECSS
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCccccCce-eeCchhcCc--cHHHHHHHHHHcCCEEEEEeCccccCCC
Confidence 56778888999999999999873222211 1110012244 466234743 5999999999999999999988765544
Q ss_pred CCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeE
Q 014447 120 RKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGW 199 (424)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGf 199 (424)
++. +.. .++|.-.. .+ .. ......+.-||+.||++++++.+.+..++++.|||+|
T Consensus 425 S~l-------~~~-----hpdw~~~~--~g------~~-----~~~~~~~~~LD~t~Pev~~~i~~~l~~~~~~~GVD~~ 479 (732)
T 2xn2_A 425 SNL-------YKE-----HPDYLXHV--PG------RK-----PCPSRNQYVLELGRKEVRDNIFEQMVKILDSKKIDYI 479 (732)
T ss_dssp SHH-------HHH-----CGGGBCCC--TT------SC-----CCCBTTBEEBCTTSHHHHHHHHHHHHHHHTTSCCCEE
T ss_pred CHH-------HHh-----CchheecC--CC------CC-----CccCCceEEEcCCCHHHHHHHHHHHHHHHHHcCCCEE
Confidence 321 000 01121110 00 00 0001123349999999999999999988877999999
Q ss_pred EecccC
Q 014447 200 RFDFVK 205 (424)
Q Consensus 200 R~D~a~ 205 (424)
.+|...
T Consensus 480 K~D~~~ 485 (732)
T 2xn2_A 480 KWDMNR 485 (732)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 999975
|
| >1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase, alpha-amylase FAMI acarbose, transferase; HET: ACR; 1.90A {Thermus aquaticus} SCOP: c.1.8.1 PDB: 1cwy_A* 1fp8_A 1fp9_A 2owc_A* 2oww_A* 2owx_A* 2x1i_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=9.1e-05 Score=74.03 Aligned_cols=59 Identities=14% Similarity=0.047 Sum_probs=44.3
Q ss_pred ceEEEeecCCCCCCCCCcHHHHH-hhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccccCCC
Q 014447 24 ALLFQGFNWESSNKAGGWYNSLK-NSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLD 83 (424)
Q Consensus 24 ~v~~~~f~~ds~~~~~G~~~gi~-~~L~ylk~lGv~~I~l~Pi~~~~-~~~gY~~~d~~~id 83 (424)
+|+.|+|...|. -|+|||.... +-++.+++.|.+.++|+|+.... ....|++.+-+..|
T Consensus 8 Gill~l~SL~s~-~GIGdfgd~a~~~vd~la~~G~~~~qilPL~pt~~~~SPY~~~S~fa~N 68 (500)
T 1esw_A 8 GLLLHPTSLPGP-YGVGVLGREARDFLRFLKEAGGRYWQVLPLGPTGYGDSPYQSFSAFAGN 68 (500)
T ss_dssp EEECCGGGSCCS-SSSCCSSHHHHHHHHHHHHTTCCEEECCCCSCBCTTCCTTSBSCSSCCC
T ss_pred EEEecchhcCCC-CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccC
Confidence 577788876653 4689999876 88999999999999999999743 23456665554444
|
| >1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A {Aquifex aeolicus} SCOP: c.1.8.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=7.5e-05 Score=74.59 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=47.7
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHH-hhhhHHHHcCCCEEEeCCCCCCC---CCCCCCcccccCCC
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLK-NSIPDLSNAGITHVWLPPPSQSV---APQGYMPGRLYDLD 83 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~-~~L~ylk~lGv~~I~l~Pi~~~~---~~~gY~~~d~~~id 83 (424)
.-.++.|+|...|. -|+|||.... +-++.+++.|.+.++|+|+.+.. .+..|++.+-+..|
T Consensus 23 ~~Gill~l~SL~s~-~GIGdfgd~a~~~vd~la~~G~~~~qilPL~pt~p~~~~SPY~~~S~fa~N 87 (505)
T 1tz7_A 23 LAGILLHVTSLPSP-YGIGDLGKEAYRFLDFLKECGFSLWQVLPLNPTSLEAGNSPYSSNSLFAGN 87 (505)
T ss_dssp EEEEECCGGGSCCS-SSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCCCGGGTTCTTSCSCSSSCC
T ss_pred ceEEEecccccCCC-CCCccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCcCcccccccc
Confidence 34689999987764 5689999866 88999999999999999999754 23567776665555
|
| >1x1n_A 4-alpha-glucanotransferase; disproportionating enzyme, amylomaltase, D-enzyme; 1.80A {Solanum tuberosum} SCOP: c.1.8.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00029 Score=70.71 Aligned_cols=59 Identities=12% Similarity=-0.018 Sum_probs=45.6
Q ss_pred ceEEEeecCCCCCCCCCcHHHHH-hhhhHHHHcCCCEEEeCCCCCCC-----CCCCCCcccccCCC
Q 014447 24 ALLFQGFNWESSNKAGGWYNSLK-NSIPDLSNAGITHVWLPPPSQSV-----APQGYMPGRLYDLD 83 (424)
Q Consensus 24 ~v~~~~f~~ds~~~~~G~~~gi~-~~L~ylk~lGv~~I~l~Pi~~~~-----~~~gY~~~d~~~id 83 (424)
+++.|+|...|. -|+|||.... +-++.+++.|.+.++|+|+.... ....|++.+-+..|
T Consensus 29 Gill~l~SL~s~-~GIGdfgd~a~~fvd~la~~G~~~~qilPL~~t~~~~p~~~SPY~~~S~fa~N 93 (524)
T 1x1n_A 29 GILLHPTSFPGP-YGIGDLGPQAFKFLDWLHLAGCSLWQVLPLVPPGKRGNEDGSPYSGQDANCGN 93 (524)
T ss_dssp EEECCGGGSCCT-TSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCBCCSSSCTTCTTSBSCSSSCC
T ss_pred EEEecccccCCC-CCCccHHHHHHHHHHHHHHcCCCEEeecCCCCCCCCCCCCCCCcCcccccccC
Confidence 689999987764 5689999866 88999999999999999998753 23456665554444
|
| >1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13 | Back alignment and structure |
|---|
Probab=97.63 E-value=6.5e-05 Score=76.71 Aligned_cols=130 Identities=12% Similarity=0.145 Sum_probs=82.6
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCC--cccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM--PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~--~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-+.+.+.++.++++|++.|+|=- ||. ..|+. +|+.+|-. ++.||+++|++|||+.+=+.+--++.
T Consensus 210 te~~v~~~ad~~~~~G~~~~~IDd--------gW~~~~Gdw~-~d~~kFP~---lk~lvd~lh~~Glk~Giw~~P~~v~~ 277 (564)
T 1zy9_A 210 TWEETLKNLKLAKNFPFEVFQIDD--------AYEKDIGDWL-VTRGDFPS---VEEMAKVIAENGFIPGIWTAPFSVSE 277 (564)
T ss_dssp CHHHHHHHHHHGGGTTCSEEEECT--------TSEEETTEEE-EECTTCCC---HHHHHHHHHHTTCEEEEEECTTEEET
T ss_pred CHHHHHHHHHHHHhcCCcEEEECc--------ccccccCCcc-cCcccCCC---HHHHHHHHHHCCCEEEEEeCCCccCC
Confidence 567888889999999999999832 222 23332 34356764 99999999999999999877753332
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 014447 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (424)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~np~v~~~l~~~~~~w~~~~gvD 197 (424)
+++. +.. .++|.-.. ++.... .+..| ....-+|+.||++++++.+.++.+ .+.|||
T Consensus 278 ~S~l-------y~~-----~pdw~v~~---~G~~~~-------~~~~W~~~~~~lD~t~P~a~~~~~~~~~~~-~~~GVD 334 (564)
T 1zy9_A 278 TSDV-------FNE-----HPDWVVKE---NGEPKM-------AYRNWNKKIYALDLSKDEVLNWLFDLFSSL-RKMGYR 334 (564)
T ss_dssp TCHH-------HHH-----CGGGBCEE---TTEECE-------EEEETTEEEEEBCTTCHHHHHHHHHHHHHH-HHTTCC
T ss_pred CChh-------HHh-----CCCeEEec---CCeeee-------eecccCCceeecCCCCHHHHHHHHHHHHHH-HhcCCC
Confidence 2210 000 11221110 000000 00000 012338999999999999999988 559999
Q ss_pred eEEecccC
Q 014447 198 GWRFDFVK 205 (424)
Q Consensus 198 GfR~D~a~ 205 (424)
||.+|...
T Consensus 335 ~iK~D~~~ 342 (564)
T 1zy9_A 335 YFKIDFLF 342 (564)
T ss_dssp EEEECCGG
T ss_pred EEEEcCCC
Confidence 99999864
|
| >1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0011 Score=63.13 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=54.9
Q ss_pred CceEEEeec--CCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCC---CCCCCCCCcccccCCCCC--------CCCC
Q 014447 23 PALLFQGFN--WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ---SVAPQGYMPGRLYDLDAS--------KYGS 89 (424)
Q Consensus 23 ~~v~~~~f~--~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~---~~~~~gY~~~d~~~id~~--------~~Gt 89 (424)
+.+.++.++ |... .++-..+.+.|+++|++|+|+|.+....+ .|.... + ++++. + .-..
T Consensus 17 ~~~~~~G~n~~~~~~---~~~~~~~~~~l~~~k~~G~N~vR~~~~~~~~~~P~~~~--~--~~~~~-~~~~~~~~~~~~~ 88 (344)
T 1qnr_A 17 KVGYFAGTNCYWCSF---LTNHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQ--I--WFQKL-SATGSTINTGADG 88 (344)
T ss_dssp EESCEEEEECGGGGG---CCCHHHHHHHHHHHHHTTCCEEECCCCCEESSCCSTTC--C--CSEEC-CTTCCEECCSTTT
T ss_pred EEEEEEEEecccccc---cCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCCc--e--eeeec-CCCCcccccCHHH
Confidence 345555554 4332 23677888999999999999999942221 121110 0 12222 1 1235
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
.+.|+++++.|+++||+||+|+..+
T Consensus 89 ~~~ld~~i~~a~~~Gi~vild~~~~ 113 (344)
T 1qnr_A 89 LQTLDYVVQSAEQHNLKLIIPFVNN 113 (344)
T ss_dssp THHHHHHHHHHHHHTCEEEEESCBS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccC
Confidence 7899999999999999999998754
|
| >3vmn_A Dextranase; TIM barrel, immunoglobrin fold, greek-KEY-motif, glycoside H family 66, hydrolase; 1.60A {Streptococcus mutans} PDB: 3vmo_A* 3vmp_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.003 Score=64.05 Aligned_cols=144 Identities=17% Similarity=0.138 Sum_probs=84.1
Q ss_pred HHhhhhHHHHcCCCEEEeCCCCC-C--C--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 45 LKNSIPDLSNAGITHVWLPPPSQ-S--V--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 45 i~~~L~ylk~lGv~~I~l~Pi~~-~--~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
-.+.|+.|+++-||.|+.==.+- + | ....+. ..+.++. .+-=..+-+|.+|++||++||+-|.=--+.-...+
T Consensus 142 ~~~~i~~L~~yHIN~~QFYDW~yrHh~P~~~~~~~~-~~W~D~~-~R~i~~~tVk~yI~~ah~~gm~aM~YnmiYaA~~~ 219 (643)
T 3vmn_A 142 YYRELEQMKNMNINSYFFYDVYKSATNPFPNVPKFD-QSWNWWS-HSQVETDAVKALVNRVHQTGAVAMLYNMILAQNAN 219 (643)
T ss_dssp HHHHHHHHHHTTCCEEEETTCCSBTTBCSCSSSEEE-CTTCTTT-CCEEEHHHHHHHHHHHHHTTCEEEEEEESSEEETT
T ss_pred hHHHHHHHHhcCcCeEEeeeecccccCcCCCCCccc-ccccccc-CCEehHHHHHHHHHHHHHcCchhhhhHhhhccccC
Confidence 35778999999999999742221 0 0 000011 1233333 33334789999999999999999986655544433
Q ss_pred C-CCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 014447 120 R-KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 198 (424)
Q Consensus 120 ~-~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDG 198 (424)
. ......|..|.... .++... .....|. . ...+.+.=+|..+|+.|++|.+.+...++.+|+||
T Consensus 220 ~~~g~~~~~~~y~~~~----~~~g~~---~~~~~~~-~-------~g~p~~~~~nP~np~wq~yI~~~~~dvv~~~dfDG 284 (643)
T 3vmn_A 220 ETAVLPDTEYIYNYET----GGYGQN---GQVMTYS-I-------DDKPLQYYYNPLSKSWQNYISNAMAQAMKNGGFDG 284 (643)
T ss_dssp SCCSSCGGGBCEESSS----BTTBST---TSBCEEE-E-------TTEEEEEEBCTTCHHHHHHHHHHHHHHHHHHTCCE
T ss_pred cccCCcchhhhhcccc----cccccc---Cccceec-c-------CCCceEEEECCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 1 11222233332210 000000 0000000 0 00112233799999999999999999998999999
Q ss_pred EEecccC
Q 014447 199 WRFDFVK 205 (424)
Q Consensus 199 fR~D~a~ 205 (424)
|-+|...
T Consensus 285 ~HiD~lG 291 (643)
T 3vmn_A 285 WQGDTIG 291 (643)
T ss_dssp EEEECSC
T ss_pred EeecccC
Confidence 9999864
|
| >2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase; HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1 b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A* 1we5_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0083 Score=63.52 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=82.8
Q ss_pred HHHHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 42 YNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
-+.+.+-++.+++.|| +.|+|=--+-. +|.-.| +..|+.+|-. .+.|++++|++|+|+++=+-+ +.+.+
T Consensus 283 e~~v~~v~~~~r~~~IP~dvi~lD~~w~~----~~~w~d-ft~d~~~FPd---p~~mv~~Lh~~G~k~~l~i~P-~I~~~ 353 (773)
T 2f2h_A 283 EATVNSFIDGMAERNLPLHVFHFDCFWMK----AFQWCD-FEWDPLTFPD---PEGMIRRLKAKGLKICVWINP-YIGQK 353 (773)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEECGGGBC----TTCCSS-CCBCTTTCSC---HHHHHHHHHHTTCEEEEEECS-EECTT
T ss_pred HHHHHHHHHHHHHcCCCeeEEEECccccc----cccccc-ceEChhhCCC---HHHHHHHHHHCCCEEEEEecC-CcCCC
Confidence 4567778888888877 88887432221 222224 3466345664 478999999999999987766 55544
Q ss_pred CCCCC----cceee-cCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 014447 120 RKDGR----GIYCI-FEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLKTE 193 (424)
Q Consensus 120 ~~~~~----~~~~~-~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~np~v~~~l~~~~~~w~~~ 193 (424)
++... ..|+. .+++. .| .+..| ....-+|+.||++++...+.++.+++
T Consensus 354 s~~y~e~~~~g~~vk~~~G~-----------------~~--------~~~~w~g~~~~~DftnP~a~~ww~~~~~~l~d- 407 (773)
T 2f2h_A 354 SPVFKELQEKGYLLKRPDGS-----------------LW--------QWDKWQPGLAIYDFTNPDACKWYADKLKGLVA- 407 (773)
T ss_dssp STTHHHHHHHTCBCBCTTSS-----------------BC--------CBSSSSTTBEEBCTTSHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHCCceeECCCCC-----------------ee--------eeeecCCCceeeCCCCHHHHHHHHHHHHHHHh-
Confidence 32100 01111 00010 00 00011 12233899999999999999999997
Q ss_pred cCCCeEEecccCCCC
Q 014447 194 IGFDGWRFDFVKGYA 208 (424)
Q Consensus 194 ~gvDGfR~D~a~~~~ 208 (424)
.|||||-+|....+|
T Consensus 408 ~Gvd~~w~D~~e~~p 422 (773)
T 2f2h_A 408 MGVDCFKTDFGERIP 422 (773)
T ss_dssp TTCCEEEECCCCCCC
T ss_pred cCCCEEEccCCCCCC
Confidence 999999999866443
|
| >4ba0_A Alpha-glucosidase, putative, ADG31B; hydrolase; HET: 5GF PGE ARG; 1.85A {Cellvibrio japonicus} PDB: 4b9z_A* 4b9y_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.019 Score=61.09 Aligned_cols=138 Identities=16% Similarity=0.176 Sum_probs=82.7
Q ss_pred cHHHHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-+.+.+-++.+++.|| +.|||=--+-...+.+ .-.| +..|+.+|-. .++|++++|++|+|+++=+-+ +...
T Consensus 275 s~~ev~~vv~~~r~~~IP~Dvi~lD~dw~g~d~~~-~~gd-ftwd~~~FPd---p~~mv~~Lh~~G~k~vl~i~P-~I~~ 348 (817)
T 4ba0_A 275 SEAETRATVQKYKTEDFPLDTIVLDLYWFGKDIKG-HMGN-LDWDKENFPT---PLDMMADFKQQGVKTVLITEP-FVLT 348 (817)
T ss_dssp SHHHHHHHHHHHHHHTCCCCEEEECGGGSCSSSSS-CTTC-CSCCTTTCSC---HHHHHHHHHHTTCEEEEEECS-EEET
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEcccccCCcccc-ccCc-cccccccCCC---HHHHHHHHHHCCCEEEEEeCC-CccC
Confidence 56788888899999888 9999864221111100 0112 4566456765 479999999999999997766 4544
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 014447 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (424)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~np~v~~~l~~~~~~w~~~~gvD 197 (424)
+++. |..+. ..+|.-. +..+....+..| ....-+|+.||++++...+.++.+.+ .|||
T Consensus 349 ~s~~-------y~e~~---~~g~~vk----------~~~G~~~~~~~w~G~~~~~DftnP~ar~ww~~~~~~l~~-~GvD 407 (817)
T 4ba0_A 349 SSKR-------WDDAV---KAKALAK----------DPQGQPKAFELYFGNGGIIDVFSKEGSRWFSSIYKDLSK-QGVA 407 (817)
T ss_dssp TSTT-------HHHHH---HTTCBCB----------CTTSSBCCEEETTEEEEEBCTTSHHHHHHHHHHHHHHHH-HTCC
T ss_pred CcHH-------HHHHH---hCCEEEE----------CCCCCeEEEEecCCCceeecCCCHHHHHHHHHHHHHHHh-CCCc
Confidence 3321 11000 0011100 000000000011 11122788999999999999998887 9999
Q ss_pred eEEecccC
Q 014447 198 GWRFDFVK 205 (424)
Q Consensus 198 GfR~D~a~ 205 (424)
||=+|+..
T Consensus 408 g~W~DmnE 415 (817)
T 4ba0_A 408 GWWGDLGE 415 (817)
T ss_dssp EEEECCTT
T ss_pred EEEecCCC
Confidence 99999865
|
| >3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.009 Score=61.43 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=63.8
Q ss_pred HHHHHHcCCCeeEEecCCCCC--------------cc---------------hHH-HHHHHHHHHHhcCCC-CCCCeEEE
Q 014447 328 GYAYILTHPGTPCIFYDHFFD--------------WG---------------LKE-AISKLAAVRNRNGIN-TASRVNIL 376 (424)
Q Consensus 328 a~a~~l~~pG~P~iyyG~~~~--------------w~---------------l~~-~~~~L~~lR~~~~al-~~G~~~~~ 376 (424)
..++-+|+||+|=||+|.|.- +. +.. .+++++++|+++|.+ ..|.+..+
T Consensus 567 q~ll~lt~PGvPD~YQG~E~wd~sLVDPDNRRpvd~~~~~~~l~~~~~~~g~~Kl~~~~~~L~lR~~~p~~F~~g~Y~pl 646 (704)
T 3hje_A 567 LVALKITSPGVADFYQGLENFRYLLTDPDNRRPVVFSELPKRYEEGLFNNGRIKAYVTKVLLNLRKSMKDFFINSEYKPL 646 (704)
T ss_dssp HHHHHHHSSSEEEEETTTTSCCCCCSTTGGGSCCCCCCCCCSCCGGGTTTSTHHHHHHHHHHHHHHHTTTHHHHSCEEEC
T ss_pred HHHHHhcCCCCCccccCcccccccCcCCCCCCCCChHHHHhhhccccCCCchHHHHHHHHHHHHHHhChhhhccCCeEEE
Confidence 455677999999999998641 21 222 678999999999986 88999998
Q ss_pred ecCCCEEEEEECCEEEEEECCCCC-CCCcCCCCcEEEEeCCc
Q 014447 377 ASDADVYIAAIGDRVIMKIGPKMD-IGNLIPSDFKVAADGTD 417 (424)
Q Consensus 377 ~~~~~v~~~~r~~~~lv~ln~~~~-~~~~~~~~~~~~~~~~~ 417 (424)
...+.+++|.|++.++|++-.... ..-..++.|++.++|..
T Consensus 647 ~~~~h~~af~R~~~~~~v~~r~~~~l~l~~~g~w~d~ltg~~ 688 (704)
T 3hje_A 647 KLQKGLCGFMRGDKVLVIVKTLNRDYDIEIDGEYTDVITDET 688 (704)
T ss_dssp CCCTTEEEEEETTTEEEEEESSSSCEEEEEEEEEEETTTTEE
T ss_pred EecceEEEEecCCcEEEEEeccccceecCCCCeeEEeecCce
Confidence 877999999997777777744221 11012345777776543
|
| >3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31, alpha-glucosidase membrane, disease mutation, disulfide bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL; 2.15A {Homo sapiens} PDB: 3lpo_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.032 Score=59.77 Aligned_cols=141 Identities=16% Similarity=0.215 Sum_probs=87.0
Q ss_pred CcHHHHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 40 GWYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
.+-..+.+-++.+++.|| +.||+=-=+. .++ .| +..|+.+|- +.++|++++|++|+|+++=+-+. .+
T Consensus 330 ~s~~ev~~vv~~~r~~~IP~Dvi~lDidy~----~~~--~d-Ft~D~~~FP---dp~~mv~~Lh~~G~k~vl~idP~-I~ 398 (898)
T 3lpp_A 330 KSLDVVKEVVRRNREAGIPFDTQVTDIDYM----EDK--KD-FTYDQVAFN---GLPQFVQDLHDHGQKYVIILDPA-IS 398 (898)
T ss_dssp CSHHHHHHHHHHHHHTTCCCCEEEECGGGS----STT--CT-TCCCTTTTT---THHHHHHHHHHTTCEEEEEECSC-EE
T ss_pred CCHHHHHHHHHHHHHcCCCceeeEeccccc----cCC--Cc-ceEChhhCC---CHHHHHHHHHHCCCEEEEEeCCc-cc
Confidence 357888999999999999 9998742111 122 23 456634676 78999999999999999977773 54
Q ss_pred CCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCC-CCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 014447 118 AERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG-NDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKTEIG 195 (424)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~dln~~np~v~~~l~~~~~~w~~~~g 195 (424)
.+++.....|..|..+.. .+++ .. +..+ ....+..|++ ..-+|+.||++++...+.++.+.++.|
T Consensus 399 ~~~~~~~~~Y~~y~eg~~---~g~f----vk------~~~G~~~~~g~~WpG~~~~~Dftnp~a~~ww~~~~~~~~~~~g 465 (898)
T 3lpp_A 399 IGRRANGTTYATYERGNT---QHVW----IN------ESDGSTPIIGEVWPGLTVYPDFTNPNCIDWWANECSIFHQEVQ 465 (898)
T ss_dssp CSCCTTSCCCHHHHHHHH---HTCB----CB------CTTSSSBCCEEETTEEEECBCTTSHHHHHHHHHHHHHHHHHSC
T ss_pred cCCcccccccHHHHHHHh---CCcE----EE------CCCCCceeEEEecCCCccccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 444211122333321100 0010 00 0000 1111112221 223789999999999999998887799
Q ss_pred CCeEEeccc
Q 014447 196 FDGWRFDFV 204 (424)
Q Consensus 196 vDGfR~D~a 204 (424)
|||+=+|+-
T Consensus 466 iDg~W~Dmn 474 (898)
T 3lpp_A 466 YDGLWIDMN 474 (898)
T ss_dssp CSEEEECST
T ss_pred ccEEEEeCC
Confidence 999999985
|
| >2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family 31, multidomain protein, (beta/alpha)8 barrel, retaining mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.019 Score=60.09 Aligned_cols=135 Identities=13% Similarity=0.162 Sum_probs=84.8
Q ss_pred cHHHHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-+.+.+-++.+++.|| +.|||=-=+ ..+|. | +..|+.+|-. .++||+++|++|+|+++=+-+ +.+.
T Consensus 188 ~~~ev~~v~~~~~~~~IP~dvi~lD~~y----~~~~~--d-ft~d~~~FPd---p~~mv~~Lh~~G~k~~l~i~P-~I~~ 256 (693)
T 2g3m_A 188 PQDKVVELVDIMQKEGFRVAGVFLDIHY----MDSYK--L-FTWHPYRFPE---PKKLIDELHKRNVKLITIVDH-GIRV 256 (693)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEECGGG----SBTTB--T-TCCCTTTCSC---HHHHHHHHHHTTCEEEEEECS-CEEC
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEecce----ecCCc--c-ceEChhhCCC---HHHHHHHHHHCCCEEEEEecC-cccC
Confidence 56788888889999888 888875311 12332 3 3566346764 789999999999999998777 5544
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 014447 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ-PAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (424)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~np~v~~~l~~~~~~w~~~~gvD 197 (424)
+. .|..|..+.. |+-. ..++..+ .+..|+ ...-+|+.||+++++..+.++.+.+ .|||
T Consensus 257 ~~-----~y~~y~e~~~-----~fvk--~~~G~~~--------~g~~W~g~~~~~Dftnp~a~~ww~~~~~~l~~-~GiD 315 (693)
T 2g3m_A 257 DQ-----NYSPFLSGMG-----KFCE--IESGELF--------VGKMWPGTTVYPDFFREDTREWWAGLISEWLS-QGVD 315 (693)
T ss_dssp CT-----TCHHHHHHTT-----SBCE--ETTSSBC--------EEEETTEEEECBCTTSHHHHHHHHHHHHHHHT-TTCC
T ss_pred CC-----CcHHHHHHHh-----heEE--CCCCCEE--------EEEeCCCCeeeeCCCCHHHHHHHHHHHHHHHh-cCCc
Confidence 32 1222222110 1100 0000000 000111 1223789999999999999999886 8999
Q ss_pred eEEecccCCC
Q 014447 198 GWRFDFVKGY 207 (424)
Q Consensus 198 GfR~D~a~~~ 207 (424)
||=+|+....
T Consensus 316 g~w~DmnEp~ 325 (693)
T 2g3m_A 316 GIWLDMNEPT 325 (693)
T ss_dssp EEEECSTTTC
T ss_pred EEEEecCCcc
Confidence 9999997544
|
| >3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.079 Score=51.55 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=39.3
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEee
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKY-GSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~-Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+-++.||++|+|+|-|+=-+ +.+.+. .-+ |-. |..+-|+++|+.|+++||+||||+
T Consensus 77 ~D~~~ik~~G~N~VRipi~~-----~~~~~~---~~~-py~~~~~~~ld~vV~~a~~~Gl~VILDl 133 (399)
T 3n9k_A 77 QDFKQISNLGLNFVRIPIGY-----WAFQLL---DND-PYVQGQVQYLEKALGWARKNNIRVWIDL 133 (399)
T ss_dssp HHHHHHHHTTCCEEEEEEEG-----GGTCCC---TTC-CCCCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHcCCCEEEEcccH-----HHccCC---CCC-ccchhHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45788999999999984211 111111 111 211 568899999999999999999998
|
| >1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.015 Score=55.82 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=41.4
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
++....+.|+-.++.||+.|+.+=. .++...=-..+.|++|++.||+.||+||+|+-+.
T Consensus 39 ~~~~~~~Yi~~a~~~Gf~~IFTSL~---------------~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DVsp~ 97 (385)
T 1x7f_A 39 TKEKDMAYISAAARHGFSRIFTCLL---------------SVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPA 97 (385)
T ss_dssp CHHHHHHHHHHHHTTTEEEEEEEEC---------------CC--------HHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CHHHHHHHHHHHHHCCCCEEEccCC---------------ccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 4666666777777899999986521 1220111236789999999999999999999886
|
| >3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31, cell membrane, disulfide bond, glycoprotein, glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A {Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A* 3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.018 Score=61.55 Aligned_cols=141 Identities=13% Similarity=0.170 Sum_probs=83.5
Q ss_pred CcHHHHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 40 GWYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
.+-+.+.+-++.+++.|| ++||+=-=+ -.++ .| +..|+.+|- +.++|++++|++|+|+++=+-+. .+
T Consensus 302 ~s~~ev~~vv~~~r~~~IP~Dvi~lDidy----~~~~--~d-Ft~D~~~FP---dp~~mv~~Lh~~G~k~v~~idP~-I~ 370 (875)
T 3l4y_A 302 GTLDNMREVVERNRAAQLPYDVQHADIDY----MDER--RD-FTYDSVDFK---GFPEFVNELHNNGQKLVIIVDPA-IS 370 (875)
T ss_dssp CSHHHHHHHHHHHHHTTCCCCEEEECGGG----SBTT--BT-TCCCTTTTT---THHHHHHHHHHTTCEEEEEECSC-EE
T ss_pred CCHHHHHHHHHHHHhcCCCCceEEEccch----hcCC--Cc-eeeChhhCC---CHHHHHHHHHHCCCEEEEEeCCc-cc
Confidence 357888888999999888 888863111 0112 23 456734676 58999999999999999976663 43
Q ss_pred CCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 014447 118 AERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKTEIGF 196 (424)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~np~v~~~l~~~~~~w~~~~gv 196 (424)
.++. ....|..|..+... +++ ..+ .++. .+..+..|++ ..-+|+.||++++...+.++.+.++.||
T Consensus 371 ~~s~-~~~~y~~y~eg~~~---g~f----vk~----~dG~-~~~~g~~WpG~~~~pDFtnP~a~~WW~~~~k~~~~~~gi 437 (875)
T 3l4y_A 371 NNSS-SSKPYGPYDRGSDM---KIW----VNS----SDGV-TPLIGEVWPGQTVFPDYTNPNCAVWWTKEFELFHNQVEF 437 (875)
T ss_dssp CCCC-SSSCCHHHHHHHHH---TCB----CBC----TTSS-SBCCEEETTEEEECBCTTSHHHHHHHHHHHHHHHTTSCC
T ss_pred cCcc-cccccHHHHHHHHC---CeE----EEC----CCCC-cceEEEecCCCccCcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 3320 11122222211000 000 000 0000 0011112221 2226889999999999999988877999
Q ss_pred CeEEeccc
Q 014447 197 DGWRFDFV 204 (424)
Q Consensus 197 DGfR~D~a 204 (424)
||+=+|+-
T Consensus 438 dg~W~Dmn 445 (875)
T 3l4y_A 438 DGIWIDMN 445 (875)
T ss_dssp SEEEECST
T ss_pred cEEEEcCC
Confidence 99999984
|
| >1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.033 Score=54.46 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=39.8
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCC-CCC-CHHHHHHHHHHHHHcCCEEEEeee
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDAS-KYG-SQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~-~~G-t~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
.+-++.||++|+|+|-| ||.- +.+.+. .-+ | ..| ..+.|+++|+.|+++||+||||+-
T Consensus 76 e~d~~~i~~~G~N~VRi-pi~~----~~~~~~---~~~-py~~~~~l~~ld~vv~~a~~~Gi~VilDlH 135 (408)
T 1h4p_A 76 EQDFANIASQGFNLVRI-PIGY----WAFQIL---DDD-PYVSGLQESYLDQAIGWARNNSLKVWVDLH 135 (408)
T ss_dssp HHHHHHHHHTTCCEEEE-EEEG----GGTCCC---TTC-CCCCSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHCCCCEEEc-cCCH----HHcccC---CCC-CCccccHHHHHHHHHHHHHHCCCEEEEECC
Confidence 34578999999999998 3321 011110 001 1 124 578999999999999999999975
|
| >3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.013 Score=55.99 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=49.0
Q ss_pred CCcHH--HHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCC---CHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 39 GGWYN--SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG---SQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 39 ~G~~~--gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G---t~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
+|.+. +..+.|+.||++|+|+|-|.+.....+.++ ..+. -.+| +.+++.+++++|+++||+|+|+.-+
T Consensus 47 ~~~~~~~~~~~~l~~lk~~g~N~VrL~v~~~~~~~~~------~~~~-~~~~~t~~~~~v~~~~~~Ak~~GL~V~l~p~i 119 (343)
T 3civ_A 47 HGTWGTDEARASMRALAEQPFNWVTLAFAGLMEHPGD------PAIA-YGPPVTVSDDEIASMAELAHALGLKVCLKPTV 119 (343)
T ss_dssp TTGGGSHHHHHHHHHHHHSSCSEEEEEEEEEESSTTC------CCCB-CSTTTBCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCcCchhHHHHHHHHHHcCCCEEEEEeeecCCCCCC------Cccc-ccCCCCCCHHHHHHHHHHHHHCCCEEEEEEEe
Confidence 44444 466889999999999999987543221111 0111 1222 5899999999999999999999877
Q ss_pred c
Q 014447 114 N 114 (424)
Q Consensus 114 N 114 (424)
.
T Consensus 120 ~ 120 (343)
T 3civ_A 120 N 120 (343)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.012 Score=56.28 Aligned_cols=60 Identities=12% Similarity=0.037 Sum_probs=43.7
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKY-GSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~-Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+.....+.|+-.++.|++.|+.+= -.++ ..- -..+.|++|++.||+.||+||+|+-+.-.
T Consensus 15 ~~~~~~~yi~~a~~~Gf~~IFTSL---------------~~~e-~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l 75 (372)
T 2p0o_A 15 ITNDTIIYIKKMKALGFDGIFTSL---------------HIPE-DDTSLYRQRLTDLGAIAKAEKMKIMVDISGEAL 75 (372)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEEE---------------CCC------CHHHHHHHHHHHHHHHTCEEEEEECHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEccC---------------CccC-CChHHHHHHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 456666777778889999998652 1222 111 23688999999999999999999988633
|
| >3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.028 Score=55.45 Aligned_cols=140 Identities=11% Similarity=0.006 Sum_probs=78.6
Q ss_pred HHHHHhhhhHH----HHcCCCEEEeCCCCCCC--CCCCCCc--------ccccCCCCCCCCC---HHHHHHHHHHHHHcC
Q 014447 42 YNSLKNSIPDL----SNAGITHVWLPPPSQSV--APQGYMP--------GRLYDLDASKYGS---QADLKSLIQAFRQKG 104 (424)
Q Consensus 42 ~~gi~~~L~yl----k~lGv~~I~l~Pi~~~~--~~~gY~~--------~d~~~id~~~~Gt---~edl~~Lv~~aH~~G 104 (424)
-+.+.+.++.+ +++|+..|.|==-+... ..++|.. ..-..+|+.+|-+ -..++.|++.+|++|
T Consensus 28 e~~i~~~ad~~~~gl~~~G~~~~~iDDgW~~~~~~~~~y~~~~~~~~d~~G~~~~~~~kFP~~~~~~Gl~~l~~~ih~~G 107 (433)
T 3cc1_A 28 EEEVLGNAEYMANHLKKYGWEYIVVDIQWYEPTANSSAYNPFAPLCMDEYGRLLPATNRFPSAKNGAGFKPLSDAIHDLG 107 (433)
T ss_dssp HHHHHHHHHHHHHHTGGGTCCEEEECSCTTCCCTTSTTCCTTSCSCBCTTSCBCCCTTTCGGGTTTTTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcchhhCCeEEEECCCcCCCCCcccccccccccccCCCCCEeECCccCCCcccCCCHHHHHHHHHHcC
Confidence 46677777877 99999999874333322 1234431 1112234233321 116999999999999
Q ss_pred CEEEEeeecc----cCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 014447 105 IKCLADMVIN----HRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180 (424)
Q Consensus 105 i~VilD~v~N----H~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~ 180 (424)
||+-+=+.+- .+..+++... .+|.......... .+ ....++.-||+.+|.++
T Consensus 108 lk~Giw~~p~i~~~~v~~~s~~~~--------------~~~~~~di~~~~~----~~------~~~~~~~~lD~~~p~~~ 163 (433)
T 3cc1_A 108 LKFGIHIMRGIPRQAVYENSPVLG--------------STKTAREIAHTNS----IC------PWNTDMYGVDPTKEGAQ 163 (433)
T ss_dssp CEEEEEEESSEEHHHHHHTCBCTT--------------SSCBHHHHEETTC----CB------TTBTTEEEECTTSTTHH
T ss_pred CeeEEEeCCCCchhccCCCCcccc--------------ccceecccccCCc----cc------CCCCCceeecCCCHHHH
Confidence 9986655442 1111111100 0111000000000 00 00122233899999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEecccCC
Q 014447 181 KELSDWMNWLKTEIGFDGWRFDFVKG 206 (424)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~D~a~~ 206 (424)
+++.+.++.+.+ .|||.|.+|....
T Consensus 164 ~~~~~~~~~l~~-~GvDyvK~D~~~~ 188 (433)
T 3cc1_A 164 SYYNSLFELYAQ-WGVDFVKVDDIAA 188 (433)
T ss_dssp HHHHHHHHHHHH-TTCCEEEEESCSC
T ss_pred HHHHHHHHHHHH-cCCCEEEeCCccc
Confidence 999888888766 9999999998643
|
| >3gyc_A Putative glycoside hydrolase; YP_001304622.1, structural GEN joint center for structural genomics, JCSG; HET: MSE; 1.85A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0097 Score=54.53 Aligned_cols=76 Identities=14% Similarity=0.292 Sum_probs=53.9
Q ss_pred ecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCC--C--CCCCCC-------CCC---CcccccCCCCCCCCCHHHHHH
Q 014447 30 FNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPP--P--SQSVAP-------QGY---MPGRLYDLDASKYGSQADLKS 95 (424)
Q Consensus 30 f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~P--i--~~~~~~-------~gY---~~~d~~~id~~~~Gt~edl~~ 95 (424)
|.|-.-..-|+.|.++...++.+++.|+|+|-|-| . +.++.. +|- .+..-+.|| ....|.+
T Consensus 24 FSWytr~~PGepf~DLD~afdEavERGYNTVRIcAmP~LLf~~p~~l~~l~pl~gQrrW~~pg~~evd-----gr~~L~e 98 (393)
T 3gyc_A 24 FSWLERRWPGAGYEDWDQVLDELSERGYNAIRIDAYPHLIAENPMKKWLLKEVWNQQDWGSPDMNEVQ-----VQPNLNL 98 (393)
T ss_dssp THHHHCCSTTSSCSCHHHHHHHHHHTTCCEEEEECCHHHHHHCTTCCEEECCSCSSSSSSCSSCEEEC-----CTTHHHH
T ss_pred hhhhhhcCCCCChhHHHHHHHHHHHcCCCeEEeccccceeecCCcchhhccccccccccCCCCCceec-----hHHHHHH
Confidence 55655555578899999999999999999998843 2 222211 111 333334444 4678999
Q ss_pred HHHHHHHcCCEEEEe
Q 014447 96 LIQAFRQKGIKCLAD 110 (424)
Q Consensus 96 Lv~~aH~~Gi~VilD 110 (424)
|.++||+||++||+-
T Consensus 99 lf~aAk~hd~~ViLS 113 (393)
T 3gyc_A 99 FLSKCKERDIKVGLS 113 (393)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCEEEEe
Confidence 999999999999984
|
| >1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.034 Score=52.76 Aligned_cols=53 Identities=13% Similarity=0.044 Sum_probs=39.9
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
+.+.-||++|+|+|-|. ++-.|. +.+-+.+.+.+++++|+++||+|++|+ |.+
T Consensus 31 d~~~ilk~~G~N~VRi~-~w~~P~--------------~g~~~~~~~~~~~~~A~~~GlkV~ld~---Hys 83 (332)
T 1hjs_A 31 PLENILAANGVNTVRQR-VWVNPA--------------DGNYNLDYNIAIAKRAKAAGLGVYIDF---HYS 83 (332)
T ss_dssp CHHHHHHHTTCCEEEEE-ECSSCT--------------TCTTSHHHHHHHHHHHHHTTCEEEEEE---CCS
T ss_pred cHHHHHHHCCCCEEEEe-eeeCCC--------------CCcCCHHHHHHHHHHHHHCCCEEEEEe---ccC
Confidence 45778899999999984 331111 123357899999999999999999997 654
|
| >1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.061 Score=52.24 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=42.0
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCCC---CCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSVA---PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~~---~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
.+.+..||++|+|+|-| +++-.|. ..+|... ..+.+.+..++++|+++||+||+|+ |.+
T Consensus 51 ~d~~~ilk~~G~N~VRl-rvwv~p~~~~g~~y~~g---------~~d~~~~~~~a~~Ak~~GLkVlldf---Hys 112 (399)
T 1ur4_A 51 QDIFKTLKEAGVNYVRV-RIWNDPYDANGNGYGGG---------NNDLEKAIQIGKRATANGMKLLADF---HYS 112 (399)
T ss_dssp CCHHHHHHHTTCCEEEE-EECSCCBCTTCCBCSTT---------CCCHHHHHHHHHHHHHTTCEEEEEE---CSS
T ss_pred chHHHHHHHCCCCEEEE-eeecCCcccccCccCCC---------CCCHHHHHHHHHHHHHCCCEEEEEe---ccC
Confidence 35688899999999997 3343221 1222221 1248899999999999999999997 554
|
| >1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.057 Score=51.28 Aligned_cols=50 Identities=14% Similarity=0.059 Sum_probs=38.0
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+.+.-||++|+|+|-|-. +-.| . +..-+.+.+++++++|+++||+||+|+
T Consensus 31 ~~~~ilk~~G~n~vRlri-~v~P-------------~-~g~~d~~~~~~~~~~ak~~Gl~v~ld~ 80 (334)
T 1fob_A 31 ALETILADAGINSIRQRV-WVNP-------------S-DGSYDLDYNLELAKRVKAAGMSLYLDL 80 (334)
T ss_dssp CHHHHHHHHTCCEEEEEE-CSCC-------------T-TCTTCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHHcCCCEEEEEE-EECC-------------C-CCccCHHHHHHHHHHHHHCCCEEEEEe
Confidence 457889999999999822 2111 1 122348899999999999999999996
|
| >3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A 3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A* 3poc_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.073 Score=55.35 Aligned_cols=136 Identities=15% Similarity=0.307 Sum_probs=79.9
Q ss_pred cHHHHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-..+.+-++.+++.|| ++|||--=+. .+| .| +..|+.+|- +.++||+++|++|+|+|+=+-+. +..
T Consensus 176 ~~~~v~~v~~~~~~~~IP~dvi~lD~dy~----~~~--~~-ft~d~~~FP---dp~~mv~~Lh~~G~k~v~~idP~-i~~ 244 (666)
T 3nsx_A 176 TKEDFRAVAKGYRENHIPIDMIYMDIDYM----QDF--KD-FTVNEKNFP---DFPEFVKEMKDQELRLIPIIDAG-VKV 244 (666)
T ss_dssp SHHHHHHHHHHHHHTTCCCCEEEECGGGS----STT--CT-TCCCTTTCT---THHHHHHHHHTTTCEEEEEEESC-EEC
T ss_pred CHHHHHHHHHHHHhcCCCcceEEEecHHH----Hhh--cc-cccChhhCC---CHHHHHHHHHHcCceEEeeeccc-eee
Confidence 56778888888888777 8888753221 122 22 456734676 58999999999999999655442 221
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 014447 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (424)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~np~v~~~l~~~~~~w~~~~gvD 197 (424)
+. .+..|..+.. .+++ +. +..+....+..|++ ..=+|+.||++++...+.++.+.+ .|||
T Consensus 245 ~~-----~~~~y~e~~~---~g~f----vk------~~~G~~~~g~~WpG~~~~pDftnp~a~~ww~~~~~~~~~-~Gid 305 (666)
T 3nsx_A 245 EK-----GYEVYEEGVK---NNYF----CK------REDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLID-QGIE 305 (666)
T ss_dssp CT-----TCHHHHHHHH---TTCB----CB------CTTSCBCCEEETTEEEECBCTTSHHHHHHHHHTTHHHHT-TTCC
T ss_pred ec-----CchHHhhhcc---cCcc----cc------CCCCCcceEEecCCccCCccccCHHHHHHhhhhhhHHHh-ccch
Confidence 11 0111111100 0000 00 00001111111111 112688999999999999988887 9999
Q ss_pred eEEecccCC
Q 014447 198 GWRFDFVKG 206 (424)
Q Consensus 198 GfR~D~a~~ 206 (424)
||=+|+...
T Consensus 306 g~W~DmnEp 314 (666)
T 3nsx_A 306 GFWNDMNEP 314 (666)
T ss_dssp EEEEESTTT
T ss_pred hhhhccCCc
Confidence 999999754
|
| >3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.039 Score=51.52 Aligned_cols=66 Identities=21% Similarity=0.251 Sum_probs=42.8
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCC-----CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSV-----APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-----~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
-..+.+.|+.+|++|+|+|-+.--.+.. ...++... .+ ..-.-.+.++++++.|.++||+||+|+-
T Consensus 41 ~~~~~~~l~~~k~~G~N~vRv~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~d~~~~~a~~~Gi~vil~~~ 111 (351)
T 3vup_A 41 KNRIEPEFKKLHDAGGNSMRLWIHIQGETTPAFNDQGFVTG----PD-KQGTMLDDMKDLLDTAKKYNILVFPCLW 111 (351)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSCEEE----SC-SSSCHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCcEEEECcccccccCccccccccccc----cc-ccHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4456777999999999999872111111 11121111 11 1112368899999999999999999984
|
| >3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.019 Score=55.63 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=45.4
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCC------------CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~------------~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vi 108 (424)
+-..+.+.|+.+|++|+|+|-+.-+.+.. ...-|+... .++ ..--..+.|.++|++|+++||+||
T Consensus 41 ~~~~i~~~l~~~a~~G~N~VRv~~f~d~~~~~~~~~~~lqp~~G~yd~~~--~~~-~~~~~~~~LD~~i~~A~k~GI~vi 117 (383)
T 3pzg_A 41 SNRMIDSVLESARDMGIKVLRIWGFLDGESYCRDKNTYMHPEPGVFGVPE--GIS-NAQNGFERLDYTIAKAKELGIKLI 117 (383)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECCCBSHHHHHHHTEESBSBTTBCSSCT--TCS-SCEEHHHHHHHHHHHHHHHTCEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccCCCcccccc--ccc-chHHHHHHHHHHHHHHHHCCCEEE
Confidence 34567788999999999999885433210 111122100 111 101127899999999999999999
Q ss_pred Eeee
Q 014447 109 ADMV 112 (424)
Q Consensus 109 lD~v 112 (424)
||+.
T Consensus 118 L~l~ 121 (383)
T 3pzg_A 118 IVLV 121 (383)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9986
|
| >2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase family 31, (beta/alpha)8 barre; HET: PXN; 2.30A {Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.19 Score=54.44 Aligned_cols=134 Identities=12% Similarity=0.076 Sum_probs=75.1
Q ss_pred cHHHHHhhhhHHHHcCCC--EEEeCCCCCCCCCCC-CCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 41 WYNSLKNSIPDLSNAGIT--HVWLPPPSQSVAPQG-YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~--~I~l~Pi~~~~~~~g-Y~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
+-+.+.+-++.+++.||- .|||== .+++ ..-.| +..|+.+|-. .+.||+++|++|+|+++=+-+. .+
T Consensus 446 sq~ev~~va~~~re~gIPlDvi~lD~-----~y~~~~~~~d-FtwD~~rFPd---p~~mv~~Lh~~G~k~vl~V~P~-I~ 515 (1020)
T 2xvl_A 446 SSDEIIQNLKEYRDRKIPIDNIVLDW-----SYWPEDAWGS-HDFDKQFFPD---PKALVDKVHAMNAQIMISVWPK-FY 515 (1020)
T ss_dssp SHHHHHHHHHHHHHTTCCCCEEEECS-----CCSCTTCTTS-CCCCTTTCSC---HHHHHHHHHHTTCEEEEEECSE-EC
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEec-----cccccCcccc-eEEChhhCCC---HHHHHHHHHHCCCEEEEEECCc-cC
Confidence 566777777888887764 777621 1111 01122 4566445664 7899999999999998866553 43
Q ss_pred CCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHH-HHHHhc
Q 014447 118 AERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA--PDIDHLNPRVQKELSDWMN-WLKTEI 194 (424)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dln~~np~v~~~l~~~~~-~w~~~~ 194 (424)
.+++ .|.... ...|.-... .+. ......+++. .-+|+.||++++...+.+. .+.+ .
T Consensus 516 ~~s~----~Y~e~~------~~G~~v~~~-----~~~-----~~~~w~wpG~~~~v~DftNPear~~ww~~l~~~l~~-~ 574 (1020)
T 2xvl_A 516 PTTD----NYKELN------AKGFMFNRN-----LDE-----KNLDWIGKGYLNAFYDPFSPEATAIFWKQIRDKINV-H 574 (1020)
T ss_dssp TTSH----HHHHHH------HTTCEETHH-----HHT-----TCCCSSTTCCCCEEECTTSHHHHHHHHHHHHHHTGG-G
T ss_pred CCch----hHHHHH------hCCCEEEcC-----CCC-----ccccccCCCCCceeeCCCChHHHHHHHHHHHHHhhh-c
Confidence 3321 111000 001100000 000 0001122332 3469999999997777665 4555 9
Q ss_pred CCCeEEecccC
Q 014447 195 GFDGWRFDFVK 205 (424)
Q Consensus 195 gvDGfR~D~a~ 205 (424)
|||||=+|+..
T Consensus 575 GiDg~W~DmnE 585 (1020)
T 2xvl_A 575 GFDAWWLDAVE 585 (1020)
T ss_dssp TCCEEEECCTT
T ss_pred CCcEEEecCCC
Confidence 99999999864
|
| >3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.062 Score=51.21 Aligned_cols=52 Identities=15% Similarity=0.367 Sum_probs=40.3
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
.+.++.||++|+|+|-+ |+... + .+..+ ..+.++++|+.|.++||+||+|+-
T Consensus 57 ~~~i~~lk~~G~N~VRi-p~~~~----~-----~~~~~-----~l~~ld~~v~~a~~~GiyVIlDlH 108 (345)
T 3jug_A 57 STAIPAIAEQGANTIRI-VLSDG----G-----QWEKD-----DIDTVREVIELAEQNKMVAVVEVH 108 (345)
T ss_dssp HHHHHHHHHTTCSEEEE-EECCS----S-----SSCCC-----CHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHHHHHcCCCEEEE-EecCC----C-----ccCHH-----HHHHHHHHHHHHHHCCCEEEEEec
Confidence 35789999999999999 55321 1 11122 488999999999999999999984
|
| >2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.063 Score=49.79 Aligned_cols=52 Identities=15% Similarity=0.350 Sum_probs=40.4
Q ss_pred HHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 45 i~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
..+.++.||++|+|+|-| |+.. |. .+.-+ ..+.++++|+.|.++||+||+|+
T Consensus 33 ~~~~~~~i~~~G~N~VRi-~~~~-----~~----~~~~~-----~~~~ld~~v~~a~~~Gi~Vild~ 84 (294)
T 2whl_A 33 ASTAIPAIAEQGANTIRI-VLSD-----GG----QWEKD-----DIDTIREVIELAEQNKMVAVVEV 84 (294)
T ss_dssp HHHHHHHHHHTTCSEEEE-EECC-----SS----SSCCC-----CHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hHHHHHHHHHcCCCEEEE-EecC-----CC----ccCcc-----HHHHHHHHHHHHHHCCCEEEEEe
Confidence 446789999999999999 5542 10 11112 58899999999999999999996
|
| >1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase, mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uz4_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.12 Score=50.93 Aligned_cols=71 Identities=10% Similarity=0.156 Sum_probs=47.2
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCC-----HHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGS-----QADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt-----~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
++-..+.+.|+.+|++|+|+|-+. .+... . ++...-+..+. +.-|. .+.|.++++.|.++||+||+|+.-+
T Consensus 59 ~~~~~~~~dl~~~k~~G~N~vR~~-~~d~~-~-~~~~~~~~~~~-~~~g~~~e~~~~~lD~~l~~a~~~Gi~vil~l~~~ 134 (440)
T 1uuq_A 59 GDRDRLAKELDNLKAIGVNNLRVL-AVSEK-S-EINSAVKPAVT-NGFGNYDETLLQGLDYLLVELAKRDMTVVLYFNNF 134 (440)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEE-CCCBC-C-CSTTSCSSCSB-SSTTCBCHHHHHHHHHHHHHHHHTTCEEEEECCBS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEC-cccCC-C-CCccccccccc-CCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcccc
Confidence 467778889999999999999997 22110 0 11000011222 22232 5678899999999999999998743
|
| >1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.069 Score=49.72 Aligned_cols=50 Identities=16% Similarity=0.376 Sum_probs=38.7
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+.++.||++|+|+|-| |+... . +...+ ..+.++++|+.|.++||+||+|+
T Consensus 36 ~~~~~lk~~G~N~VRi-~~~~~---~------~w~~~-----~~~~ld~~v~~a~~~Gi~Vild~ 85 (302)
T 1bqc_A 36 QAFADIKSHGANTVRV-VLSNG---V------RWSKN-----GPSDVANVISLCKQNRLICMLEV 85 (302)
T ss_dssp THHHHHHHTTCSEEEE-EECCS---S------SSCCC-----CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHcCCCEEEE-EccCC---c------ccCCC-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 6788999999999998 44321 0 11223 36899999999999999999996
|
| >1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A | Back alignment and structure |
|---|
Probab=94.23 E-value=0.064 Score=51.17 Aligned_cols=88 Identities=16% Similarity=0.302 Sum_probs=53.7
Q ss_pred CCceEEEeecCCCCCC----CCCc-HHHHHhhhhHHHHcCCCEEEeCCCCC---CCCCCCCCcccccCCCCCCC-C--CH
Q 014447 22 SPALLFQGFNWESSNK----AGGW-YNSLKNSIPDLSNAGITHVWLPPPSQ---SVAPQGYMPGRLYDLDASKY-G--SQ 90 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~----~~G~-~~gi~~~L~ylk~lGv~~I~l~Pi~~---~~~~~gY~~~d~~~id~~~~-G--t~ 90 (424)
++.+.++..+|-.... ..|. -..+.+-++.||++|+|+|-|. +.- .+.... ...|+...+ |.+ | ..
T Consensus 18 G~~~~l~GvN~~g~~~~~~~~~g~~~~~~~~~~~~~~~~G~n~vRi~-~~~~~~~~~~~~-~~~~~~~~n-p~~~g~~~~ 94 (358)
T 1ece_A 18 NVPVRIAGINWFGFETCNYVVHGLWSRDYRSMLDQIKSLGYNTIRLP-YSDDILKPGTMP-NSINFYQMN-QDLQGLTSL 94 (358)
T ss_dssp SCEECCEEEECCCBTTTTCSCTTTTTSCHHHHHHHHHHTTCCEEEEE-EEGGGGSTTCCC-CSCCCSSSC-TTTTTCCHH
T ss_pred CCEEEEEEEecCCcCccccCccchhhchHHHHHHHHHHcCCCEEEee-ccHHHhcCCCCC-ccccccccC-ccccCccHH
Confidence 4456666666532110 0111 1235778899999999999985 321 011000 112222355 443 3 57
Q ss_pred HHHHHHHHHHHHcCCEEEEeee
Q 014447 91 ADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 91 edl~~Lv~~aH~~Gi~VilD~v 112 (424)
+.++++|+.|.++||+||+|+-
T Consensus 95 ~~ld~~v~~a~~~Gi~vild~h 116 (358)
T 1ece_A 95 QVMDKIVAYAGQIGLRIILDRH 116 (358)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEecC
Confidence 8899999999999999999986
|
| >3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A | Back alignment and structure |
|---|
Probab=94.00 E-value=0.061 Score=50.87 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=39.2
Q ss_pred hhhHH-HHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 48 SIPDL-SNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 48 ~L~yl-k~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
.++.| |++|+|+|-+ |+... ..|| .+| +. ..+.++++|+.|.++||+||+|+
T Consensus 73 ~~~~l~~~~G~N~VRi-~~~~~--~~~~------~~~-~~--~~~~ld~~v~~a~~~Gi~VilD~ 125 (327)
T 3pzt_A 73 SLKWLRDDWGITVFRA-AMYTA--DGGY------IDN-PS--VKNKVKEAVEAAKELGIYVIIDW 125 (327)
T ss_dssp HHHHHHHHTCCSEEEE-EEESS--TTST------TTC-GG--GHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHhcCCCEEEE-EeEEC--CCCc------ccC-HH--HHHHHHHHHHHHHHCCCEEEEEe
Confidence 46778 6899999998 44321 1232 235 54 38899999999999999999997
|
| >1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.045 Score=50.74 Aligned_cols=59 Identities=12% Similarity=0.226 Sum_probs=40.0
Q ss_pred HhhhhHHH-HcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 46 KNSIPDLS-NAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 46 ~~~L~ylk-~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
.+.++.|| ++|+|+|-++ +...+...+| ...| |. +..+.++++|+.|.++||+||+|+-
T Consensus 41 ~~di~~~~~~~G~N~vRi~-~~~~~~~~~~-----~~~~-p~-~~~~~ld~~v~~a~~~Gi~vild~h 100 (293)
T 1tvn_A 41 AETVAKAKTEFNATLIRAA-IGHGTSTGGS-----LNFD-WE-GNMSRLDTVVNAAIAEDMYVIIDFH 100 (293)
T ss_dssp HHHHHHHHHHHCCSEEEEE-EECCTTSTTS-----TTTC-HH-HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEe-ccccCCCCCc-----cccC-hH-HHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 35678899 5999999983 3221211222 2224 31 2367899999999999999999973
|
| >1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.099 Score=54.31 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=71.1
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCC--CCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD--ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id--~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
-.-+.+.++.+|++|+|+|-+. ++. | ..+. +..| ..+.++++++.||++||+||+++. |.+.
T Consensus 13 ~~~~~~dl~~mk~~G~N~vR~~-if~----W-------~~~eP~~g~~-d~~~ld~~ld~a~~~Gi~vil~~~--~~~~- 76 (645)
T 1kwg_A 13 KERWKEDARRMREAGLSHVRIG-EFA----W-------ALLEPEPGRL-EWGWLDEAIATLAAEGLKVVLGTP--TATP- 76 (645)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEC-TTC----H-------HHHCSBTTBC-CCHHHHHHHHHHHTTTCEEEEECS--TTSC-
T ss_pred HHHHHHHHHHHHHcCCCEEEEe-eec----h-------hhcCCCCCcc-ChHHHHHHHHHHHHCCCEEEEeCC--CCCC-
Confidence 4567788999999999999984 211 0 0111 0112 145799999999999999999863 2211
Q ss_pred CCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc----C
Q 014447 120 RKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI----G 195 (424)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~----g 195 (424)
..|..-. .++|.... ..+.. ..+......++.+|..++++...++.+++.+ .
T Consensus 77 -----P~Wl~~~------~P~~~~~~----------~~G~~---~~~g~r~~~~~~~p~~~~~~~~~~~~l~~ry~~~p~ 132 (645)
T 1kwg_A 77 -----PKWLVDR------YPEILPVD----------REGRR---RRFGGRRHYCFSSPVYREEARRIVTLLAERYGGLEA 132 (645)
T ss_dssp -----CHHHHHH------CGGGSCBC----------TTSCB---CCSSSSCCCCTTCHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred -----ChhHhhc------CCceeeeC----------CCCcC---cccCccccCCCCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 0111000 01111100 00000 0111122356788999999999988888766 5
Q ss_pred CCeEEecc
Q 014447 196 FDGWRFDF 203 (424)
Q Consensus 196 vDGfR~D~ 203 (424)
|.|+-++.
T Consensus 133 V~~w~i~N 140 (645)
T 1kwg_A 133 VAGFQTDN 140 (645)
T ss_dssp EEEEECSS
T ss_pred EEEEEecC
Confidence 77887776
|
| >3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.061 Score=50.53 Aligned_cols=58 Identities=10% Similarity=0.183 Sum_probs=40.3
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCCCCCCCC-cccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYM-PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~-~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
.+-++.||++|+|+|-|+ |.= .... ..+-+.+| +. ..+.++++|+.|+++||+||+|+
T Consensus 44 ~~d~~~l~~~G~n~vRi~-i~w----~~~~~~~~~~~~~-~~--~~~~~d~~v~~a~~~Gi~vildl 102 (320)
T 3nco_A 44 DEYFKIIKERGFDSVRIP-IRW----SAHISEKYPYEID-KF--FLDRVKHVVDVALKNDLVVIINC 102 (320)
T ss_dssp HHHHHHHHHHTCCEEEEC-CCG----GGSBCSSTTCCBC-HH--HHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHCCCCEEEEe-eeh----HHhcCCCCCCccC-HH--HHHHHHHHHHHHHHCCCEEEEEc
Confidence 467899999999999994 320 0110 01112344 22 16789999999999999999997
|
| >2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.076 Score=50.41 Aligned_cols=83 Identities=14% Similarity=0.304 Sum_probs=52.2
Q ss_pred CCceEEEeec--CCCCCC-C-CCc----HHHHHhhhhHHHHcCCCEEEeCCCCCC---C--CCCCCCcccccCCCCCCCC
Q 014447 22 SPALLFQGFN--WESSNK-A-GGW----YNSLKNSIPDLSNAGITHVWLPPPSQS---V--APQGYMPGRLYDLDASKYG 88 (424)
Q Consensus 22 ~~~v~~~~f~--~ds~~~-~-~G~----~~gi~~~L~ylk~lGv~~I~l~Pi~~~---~--~~~gY~~~d~~~id~~~~G 88 (424)
++.++++..+ |...+. . .|- ...+.+-|+.+|++|+|+|-+.-..+. | ...|+ ....| + .
T Consensus 16 G~~~~~~GvN~~w~~~~~~~~~~~~~~~~~~~~~d~~~~k~~G~N~vR~~~~~~~~~~p~~~~~g~----~~~~~-~--~ 88 (353)
T 2c0h_A 16 GHHIFLSGANQAWVNYARDFGHNQYSKGKSTFESTLSDMQSHGGNSVRVWLHIEGESTPEFDNNGY----VTGID-N--T 88 (353)
T ss_dssp TEEECEEEEECCCSSTTCSSSTTCHHHHHHHHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSC----EEECC-T--T
T ss_pred CeEEEEEEEEHHhhhccccccCCccccchHHHHHHHHHHHHcCCCEEEEceecCCccCccccCCCc----cccCC-H--H
Confidence 3456666654 444331 1 122 344666799999999999987411111 1 11121 12344 3 4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEee
Q 014447 89 SQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
..+.++++++.|+++||+||+|+
T Consensus 89 ~~~~ld~~~~~a~~~Gi~vil~l 111 (353)
T 2c0h_A 89 LISDMRAYLHAAQRHNILIFFTL 111 (353)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEc
Confidence 57889999999999999999999
|
| >1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=93.65 E-value=0.06 Score=51.05 Aligned_cols=58 Identities=9% Similarity=0.048 Sum_probs=40.2
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcc-cccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPG-RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~-d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
.+-++.||++|+|+|-|.--+.. +.+. +.+.++ + +..+.++++|+.|.++||+||||+
T Consensus 39 ~~d~~~i~~~G~n~vRi~i~~~~-----~~~~~~p~~~~-~--~~~~~ld~~v~~a~~~Gi~vildl 97 (341)
T 1vjz_A 39 EEDFLWMAQWDFNFVRIPMCHLL-----WSDRGNPFIIR-E--DFFEKIDRVIFWGEKYGIHICISL 97 (341)
T ss_dssp HHHHHHHHHTTCCEEEEEEEGGG-----TSCSSCTTCCC-G--GGHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEeeCCHHH-----hcCCCCCCcCC-H--HHHHHHHHHHHHHHHcCCEEEEEe
Confidence 35688999999999998521111 1110 011223 2 357889999999999999999998
|
| >1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=93.62 E-value=0.043 Score=53.05 Aligned_cols=58 Identities=12% Similarity=0.238 Sum_probs=39.8
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
.+-++.||++|+++|-|.--+.. +.+..-+.++ +. ..+.++++|+.|.++||+||||+
T Consensus 64 ~~di~~i~~~G~n~vRipv~w~~-----~~~~~~~~~~-~~--~l~~l~~~v~~a~~~Gi~vild~ 121 (380)
T 1edg_A 64 KQMIDAIKQKGFNTVRIPVSWHP-----HVSGSDYKIS-DV--WMNRVQEVVNYCIDNKMYVILNT 121 (380)
T ss_dssp HHHHHHHHHHTCCEEEECCCCGG-----GEETTTTEEC-HH--HHHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEecccHHh-----hcCCCCCcCC-HH--HHHHHHHHHHHHHHCCCEEEEeC
Confidence 45688999999999999532211 1110011233 22 26789999999999999999996
|
| >1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A | Back alignment and structure |
|---|
Probab=93.42 E-value=0.12 Score=48.97 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=39.8
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCCCCCCCCccc-ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGR-LYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d-~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
.+-++.||++|+|+|-|.--+.. +.+.+ -..++ + +..+.++++|+.|+++||+||+|+-
T Consensus 31 ~~d~~~i~~~G~n~vRi~i~~~~-----~~~~~~~g~~~-~--~~~~~l~~~v~~a~~~Gi~vildlh 90 (343)
T 1ceo_A 31 EKDIETIAEAGFDHVRLPFDYPI-----IESDDNVGEYK-E--DGLSYIDRCLEWCKKYNLGLVLDMH 90 (343)
T ss_dssp HHHHHHHHHHTCCEEEEEEEGGG-----TBCSSSTTCBC-H--HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEecCCHHH-----hccccCCCccc-H--HHHHHHHHHHHHHHHCCCEEEEEec
Confidence 35688999999999998532211 00000 00122 1 2367899999999999999999974
|
| >3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.15 Score=53.28 Aligned_cols=121 Identities=13% Similarity=0.049 Sum_probs=70.2
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCC-C--CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPS-Q--SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~-~--~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
-.-+.+.|..+|++|+|+|-+..+. . .|.. ..|. .+.+.++++.||++||+||+.+....+
T Consensus 22 ~~~~~~Dl~~mk~~G~n~vr~~if~W~~~eP~~-------------g~~~-f~~ld~~i~~~~~~Gi~vil~~~~~~~-- 85 (675)
T 3tty_A 22 KATMEEDMRMFNLAGIDVATVNVFSWAKIQRDE-------------VSYD-FTWLDDIIERLTKENIYLCLATSTGAH-- 85 (675)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECSSCHHHHBSSS-------------SCBC-CHHHHHHHHHHHHTTCEEEEECCTTSC--
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeechhhhCCcC-------------CccC-HHHHHHHHHHHHHCCCEEEEeCCCCCC--
Confidence 4567788999999999999985311 0 1111 1111 358999999999999999998653211
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCC--
Q 014447 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGF-- 196 (424)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gv-- 196 (424)
..|..-. .++|... +..+... .+......++.+|..++++.+.++.+++.++-
T Consensus 86 ------P~Wl~~~------~Pe~l~~----------d~~G~~~---~~g~r~~~~~~~p~~~~~~~~~~~~l~~ry~~~p 140 (675)
T 3tty_A 86 ------PAWMAKK------YPDVLRV----------DYEGRKR---KFGGRHNSCPNSPTYRKYAKILAGKLAERYKDHP 140 (675)
T ss_dssp ------CHHHHHH------CGGGBCB----------CTTSCBC---CSCSSSCBCTTCHHHHHHHHHHHHHHHHHTTTCT
T ss_pred ------Chhhhhc------CCceeee----------cCCCcCc---ccCCccCCCCCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 1111000 0111100 0000000 11122235688999999999999888876654
Q ss_pred --CeEEecc
Q 014447 197 --DGWRFDF 203 (424)
Q Consensus 197 --DGfR~D~ 203 (424)
-|+-++.
T Consensus 141 ~Vi~w~v~N 149 (675)
T 3tty_A 141 QIVMWHVSN 149 (675)
T ss_dssp TEEEEECSS
T ss_pred cEEEEEEcc
Confidence 4555554
|
| >3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.082 Score=50.37 Aligned_cols=58 Identities=14% Similarity=0.231 Sum_probs=40.0
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcc-cccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPG-RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~-d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
.+-++.||++|+++|-|+=-+.. +.+. .-+.+| +. ..+.++++|+.|+++||+||||+
T Consensus 45 ~~di~~i~~~G~n~vRipi~w~~-----~~~~~~~~~~~-~~--~l~~l~~~v~~a~~~Gi~vildl 103 (345)
T 3ndz_A 45 HAMINKIKEAGFNTLRLPVTWDG-----HMGAAPEYTID-QT--WMKRVEEIANYAFDNDMYVIINL 103 (345)
T ss_dssp HHHHHHHHHHTCCEEEECCCCTT-----SBCCTTTCCBC-HH--HHHHHHHHHHHHHTTTCEEEECC
T ss_pred HHHHHHHHHCCCCEEEEeeehHH-----hCCCCCCCccC-HH--HHHHHHHHHHHHHHCCCEEEEec
Confidence 35688999999999998422211 1000 012334 22 26889999999999999999996
|
| >1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=93.15 E-value=0.11 Score=49.70 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=42.5
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG--SQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G--t~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
-..+.+.|+.+|++|+|+|-+.-.... ....+.+ .+..|- ..+.|+++|+.|+++||+||+|+.-
T Consensus 41 ~~~~~~dl~~~k~~G~N~vR~~~~~~~-~w~~~~~------~~g~~~~~~~~~ld~~i~~a~~~Gi~vil~l~~ 107 (373)
T 1rh9_A 41 RIKVTNTFQQASKYKMNVARTWAFSHG-GSRPLQS------APGVYNEQMFQGLDFVISEAKKYGIHLIMSLVN 107 (373)
T ss_dssp THHHHHHHHHHHHTTCCEEEEESSCSS-SSSCSEE------ETTEECHHHHHHHHHHHHHHHHTTCEEEEECCB
T ss_pred HHHHHHHHHHHHHCCCCEEEECeecCC-CCccccC------CCCccCHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 456777899999999999998321111 0000111 101111 2567899999999999999999863
|
| >3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=0.1 Score=51.78 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=45.1
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCCC-CCCCCCCCcccc-cCCCCCCC---CCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPSQ-SVAPQGYMPGRL-YDLDASKY---GSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~~-~~~~~gY~~~d~-~~id~~~~---Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
+.+.+-++.||++|+|+|-|+ +.- .-...+ .+... +..+ |.+ ...+.++++|++|+++||+||+|+-
T Consensus 84 ~~~~~~i~~ik~~G~N~VRip-i~~~~l~~~~-~p~~~~~~~n-p~~~~~~~l~~ld~vV~~a~~~Gi~VIldlH 155 (458)
T 3qho_A 84 RNWEDMLLQIKSLGFNAIRLP-FCTESVKPGT-QPIGIDYSKN-PDLRGLDSLQIMEKIIKKAGDLGIFVLLDYH 155 (458)
T ss_dssp SCHHHHHHHHHHTTCCEEEEE-EETGGGSTTC-CCCCCCTTTC-GGGTTCCHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEe-eeHHHhCCCC-CccccccccC-ccccchHHHHHHHHHHHHHHHCCCEEEEecc
Confidence 346678899999999999995 221 100000 01000 3455 543 2488999999999999999999985
|
| >2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.058 Score=30.80 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHcCCEEE
Q 014447 87 YGSQADLKSLIQAFRQKGIKCL 108 (424)
Q Consensus 87 ~Gt~edl~~Lv~~aH~~Gi~Vi 108 (424)
-||.|+|+.|-++|++.+|+|-
T Consensus 11 ggtpeelkklkeeakkanirvt 32 (36)
T 2ki0_A 11 GGTPEELKKLKEEAKKANIRVT 32 (36)
T ss_dssp CCCHHHHHHHHHHHHHHCCCCC
T ss_pred cCCHHHHHHHHHHHHhccEEEE
Confidence 4899999999999999999874
|
| >2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.12 Score=51.71 Aligned_cols=58 Identities=14% Similarity=0.226 Sum_probs=40.8
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+-++.||++|+|+|-| |+.-.. .+|... -..+ +.+ ..+.++++|+.|.++||+||||+
T Consensus 43 ~d~~~i~~~G~N~VRi-pv~~~~--~~~~~~--~~~~-~~~-~l~~ld~vv~~a~~~Gl~VIlD~ 100 (491)
T 2y8k_A 43 DQIARVKELGFNAVHL-YAECFD--PRYPAP--GSKA-PGY-AVNEIDKIVERTRELGLYLVITI 100 (491)
T ss_dssp HHHGGGGGGTCCEEEE-EEEECC--TTTTST--TCCC-TTT-THHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHcCCCEEEE-Cceeec--ccccCC--CccC-hhH-HHHHHHHHHHHHHHCCCEEEEEC
Confidence 4577889999999997 553110 122111 0234 433 48899999999999999999996
|
| >3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A {Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A* 3n18_A* 3n1a_A* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.47 Score=44.83 Aligned_cols=69 Identities=23% Similarity=0.365 Sum_probs=52.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCC
Q 014447 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160 (424)
Q Consensus 81 ~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 160 (424)
.++ |...+.+++.+.+++||++|+||++-+ +. |.. +
T Consensus 50 ~~~-~~~~~~~~~~~~i~~~k~~g~kvllsi-----GG----------------------~~~----------s------ 85 (333)
T 3n12_A 50 EFS-PVYGTDADFKSDISYLKSKGKKVVLSI-----GG----------------------QNG----------V------ 85 (333)
T ss_dssp ECC-CSSSCHHHHHHHHHHHHHTTCEEEEEE-----ES----------------------TTC----------C------
T ss_pred Eec-CCccchHHHHHHHHHHHhCCCeEEEEe-----cC----------------------CCC----------c------
Confidence 356 666678899999999999999999855 11 100 0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014447 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (424)
Q Consensus 161 ~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (424)
--..+++.|+.+++.+..+++++|.||+-+|-=
T Consensus 86 -----------~~~~~~~~r~~fi~si~~~~~~~gfDGiDiDwE 118 (333)
T 3n12_A 86 -----------VLLPDNAAKDRFINSIQSLIDKYGFDGIDIDLE 118 (333)
T ss_dssp -----------CCCCSHHHHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred -----------cccCCHHHHHHHHHHHHHHHHHcCCCeEEEecc
Confidence 123568899999999988888899999999963
|
| >1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A | Back alignment and structure |
|---|
Probab=92.56 E-value=0.14 Score=47.81 Aligned_cols=58 Identities=26% Similarity=0.300 Sum_probs=38.4
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCCCCCCCCc-ccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMP-GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~-~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
.+-++.||++|+|+|-|+ +.-. ...+ ..-..++ + ...+-++++|+.|.++||+||+|+
T Consensus 34 ~~di~~~~~~G~n~vRi~-i~w~----~~~~~~~~~~~~-~--~~l~~~~~~v~~~~~~gi~vild~ 92 (305)
T 1h1n_A 34 PNTIDTLISKGMNIFRVP-FMME----RLVPNSMTGSPD-P--NYLADLIATVNAITQKGAYAVVDP 92 (305)
T ss_dssp HHHHHHHHHTTCCEEEEE-ECHH----HHSCSSTTSCCC-H--HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCCEEEec-ccHH----HcCCCCCCCCcC-H--HHHHHHHHHHHHHHHCCCEEEEec
Confidence 466889999999999984 2100 0000 0001122 1 125679999999999999999996
|
| >3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A* | Back alignment and structure |
|---|
Probab=92.53 E-value=0.21 Score=46.60 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=40.1
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
.+.++.||++|+++|-+.--+..-... ..-+.+| +. ..+.++++|+.|+++||+||+|+
T Consensus 36 ~~d~~~l~~~G~n~vR~~i~w~~~~~~----~~~~~~~-~~--~~~~~d~~v~~a~~~Gi~vild~ 94 (317)
T 3aof_A 36 DEFFDIIKEAGFSHVRIPIRWSTHAYA----FPPYKIM-DR--FFKRVDEVINGALKRGLAVVINI 94 (317)
T ss_dssp THHHHHHHHHTCSEEEECCCGGGGBCS----STTCCBC-HH--HHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeccHHHhcCC----CCCCcCC-HH--HHHHHHHHHHHHHHCCCEEEEEe
Confidence 456889999999999996322110000 0012234 31 36779999999999999999997
|
| >2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.094 Score=52.40 Aligned_cols=58 Identities=19% Similarity=0.276 Sum_probs=39.4
Q ss_pred HHhhh-hHHHHcCCCEEEeCCCCCC--CCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 45 LKNSI-PDLSNAGITHVWLPPPSQS--VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 45 i~~~L-~ylk~lGv~~I~l~Pi~~~--~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
..+.+ +.||++|+|+|-|.--+.. +.. | .+| ....+.++++|+.|+++||+||||+--
T Consensus 67 ~~~di~~~l~~~G~N~VRl~v~w~~~~p~~-g-------~~~---~~~l~~l~~~v~~a~~~Gi~vildlH~ 127 (481)
T 2osx_A 67 TEADLAREYADMGTNFVRFLISWRSVEPAP-G-------VYD---QQYLDRVEDRVGWYAERGYKVMLDMHQ 127 (481)
T ss_dssp CHHHHHHHHHHHCCCEEEEEECHHHHCSBT-T-------BCC---HHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cHHHHHHHHHHCCCCEEEEeCcHHHcCCCC-C-------CcC---HHHHHHHHHHHHHHHHCCCEEEEEccc
Confidence 44667 8999999999998421110 000 1 112 113568889999999999999999753
|
| >3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.26 Score=47.43 Aligned_cols=59 Identities=10% Similarity=0.146 Sum_probs=38.9
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
.+-++.||++|+|+|-|+ |.-.. -+....-+.++ + ...+.++++|+.|.++||+||||+
T Consensus 65 ~~di~~i~~~G~N~vRip-i~w~~---~~~~~~~~~~~-~--~~l~~~~~vv~~a~~~Gi~vildl 123 (376)
T 3ayr_A 65 EDMFKVLIDNQFNVFRIP-TTWSG---HFGEAPDYKID-E--KWLKRVHEVVDYPYKNGAFVILNL 123 (376)
T ss_dssp HHHHHHHHHTTCCEEEEC-CCCTT---SBCCTTTCCBC-H--HHHHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEe-eEChh---hcCCCCCCccC-H--HHHHHHHHHHHHHHHCCCEEEEEC
Confidence 355888999999999994 32110 00000011233 2 126789999999999999999996
|
| >1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=92.42 E-value=0.38 Score=46.00 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=43.4
Q ss_pred cHHHHHhhhhHH-----HHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 41 WYNSLKNSIPDL-----SNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 41 ~~~gi~~~L~yl-----k~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
+-+.+.+.++.+ +++|+.+|.|==-+....... -.|+ .+|+.+|-+ .++.|++.+|++|||+.+=.-
T Consensus 24 ~e~~i~~~ad~~~~~gl~~~G~~~v~iDdgW~~~~rd~--~G~~-~~~~~~FP~--Gl~~l~~~ih~~Glk~Giw~~ 95 (362)
T 1uas_A 24 NEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDS--QGNF-VPNRQTFPS--GIKALADYVHAKGLKLGIYSD 95 (362)
T ss_dssp CHHHHHHHHHHHHHTSHHHHTCCEEECCSSCBCSSCCT--TSCC-CBCTTTCTT--CHHHHHHHHHHTTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHcCchhcCCcEEEECCCcCCCCCCC--CCCe-eEChhccCc--cHHHHHHHHHHCCCEeEEEee
Confidence 466777888888 999999998732222111001 1233 566334632 499999999999999876443
|
| >1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3 | Back alignment and structure |
|---|
Probab=92.39 E-value=0.2 Score=49.83 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=40.1
Q ss_pred HHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 45 i~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
..+-++.||++|+|+|-| |+.. |+ .+.-+ ..+.++++|+.|.++||+||||+
T Consensus 41 ~~~di~~ik~~G~N~VRi-pv~~-----g~----~~~~~-----~l~~ld~vv~~a~~~Gl~VIlDl 92 (464)
T 1wky_A 41 ATTAIEGIANTGANTVRI-VLSD-----GG----QWTKD-----DIQTVRNLISLAEDNNLVAVLEV 92 (464)
T ss_dssp HHHHHHHHHTTTCSEEEE-EECC-----SS----SSCCC-----CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHHHHCCCCEEEE-EcCC-----CC----ccCHH-----HHHHHHHHHHHHHHCCCEEEEEe
Confidence 446789999999999998 5531 11 01112 58899999999999999999997
|
| >3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.26 E-value=1.2 Score=45.70 Aligned_cols=62 Identities=23% Similarity=0.155 Sum_probs=48.6
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD 110 (424)
+-+......-+|..+++|+.+|.+---++. . .-.|+..++ |.+ ++++|++-||++|++|+|=
T Consensus 305 g~n~~~~k~yIDfAa~~G~~yvlvD~gW~~-~----~~~d~~~~~-p~~----di~~l~~Ya~~kgV~i~lw 366 (641)
T 3a24_A 305 GVNNPTYKAYIDFASANGIEYVILDEGWAV-N----LQADLMQVV-KEI----DLKELVDYAASKNVGIILW 366 (641)
T ss_dssp SSSHHHHHHHHHHHHHTTCCEEEECTTSBC-T----TSCCTTCBC-TTC----CHHHHHHHHHHTTCEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeccccc-C----CCCCccccC-CcC----CHHHHHHHHHhcCCEEEEE
Confidence 458999999999999999999999332221 1 112677888 764 6999999999999999973
|
| >2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A* | Back alignment and structure |
|---|
Probab=92.03 E-value=0.16 Score=49.19 Aligned_cols=62 Identities=10% Similarity=0.180 Sum_probs=40.8
Q ss_pred HHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 45 i~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
..+-++.||++|+|+|-|+=-+... ..+..-+.+| + ...+.++++|+.|+++||+||||+--
T Consensus 71 ~~~d~~~l~~~G~n~vRl~i~w~~~----~~~~~~~~~~-~--~~l~~~d~~v~~a~~~Gi~vild~h~ 132 (395)
T 2jep_A 71 TPELIKKVKAAGFKSIRIPVSYLNN----IGSAPNYTIN-A--AWLNRIQQVVDYAYNEGLYVIINIHG 132 (395)
T ss_dssp CHHHHHHHHHTTCCEEEECCCCGGG----BCCTTTCCBC-H--HHHHHHHHHHHHHHTTTCEEEECCCG
T ss_pred cHHHHHHHHHcCCCEEEEeeeeccc----cCCCCCCccC-H--HHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 3456889999999999985322110 0000001223 1 12577999999999999999999754
|
| >3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics, unknown function, hydrolase, PSI-2, protein structure initiative; 1.50A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=91.89 E-value=1.1 Score=41.74 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP 168 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (424)
+.++|++.|++||++|+||+|-+ +. |. + .
T Consensus 60 ~~~~~~~~i~~~~~~g~kvllsi-----GG----------------------~~-------------~--s--------- 88 (302)
T 3ebv_A 60 TVDQFKADVRAKQAAGKKVIISV-----GG----------------------EK-------------G--T--------- 88 (302)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEE-----EE----------------------TT-------------C--C---------
T ss_pred CHHHHHHHHHHHHcCCCEEEEEE-----EC----------------------CC-------------C--C---------
Confidence 47889999999999999999876 11 00 0 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH
Q 014447 169 APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 209 (424)
Q Consensus 169 ~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~ 209 (424)
....+++.|+.+++.+..+++++|+||+-+|-=.....
T Consensus 89 ---~~~~~~~~r~~f~~~~~~~~~~~~~DGiDiD~E~p~~~ 126 (302)
T 3ebv_A 89 ---VSVNSSASATNFANSVYSVMREYGFDGVDIDLENGLNP 126 (302)
T ss_dssp ---CCCCSHHHHHHHHHHHHHHHHHHTCCEEEEEECSCCCH
T ss_pred ---cccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccccCH
Confidence 12456888999999998888889999999997544443
|
| >3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=91.70 E-value=0.076 Score=50.51 Aligned_cols=62 Identities=21% Similarity=0.249 Sum_probs=41.7
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCc-ccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMP-GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~-~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
.+..+-+++||++|+++|-|+ |.-. ...+ ..-..+| +. ..+.++++|+.|.++||+||||+-
T Consensus 43 ~~t~~m~~~i~~~G~N~vRip-i~w~----~~~~~~~~g~~~-~~--~l~~ld~vV~~a~~~Gi~vIlDlH 105 (340)
T 3qr3_A 43 DGIGQMQHFVNEDGMTIFRLP-VGWQ----YLVNNNLGGNLD-ST--SISKYDQLVQGCLSLGAYCIVDIH 105 (340)
T ss_dssp CHHHHHHHHHHHHCCCEEEEE-ECHH----HHTTTCTTCCCC-HH--HHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ccHHHHHHHHHHCCCCEEEEE-eeHH----HhCCCCCCCccC-HH--HHHHHHHHHHHHHHCCCEEEEEec
Confidence 455566678999999999984 3210 0000 0001344 32 278899999999999999999983
|
| >1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=91.69 E-value=0.12 Score=47.85 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=39.1
Q ss_pred HhhhhHHH-HcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 46 KNSIPDLS-NAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 46 ~~~L~ylk-~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
.+-++.|| ++|+|+|-++ +... ...+| ..+ |. +..+.++++|+.|.++||+||+|+
T Consensus 41 ~~d~~~l~~~~G~N~vR~~-~~~~-~~~~~------~~~-~~-~~~~~ld~~v~~a~~~Gi~vild~ 97 (291)
T 1egz_A 41 ADTVASLKKDWKSSIVRAA-MGVQ-ESGGY------LQD-PA-GNKAKVERVVDAAIANDMYAIIGW 97 (291)
T ss_dssp HHHHHHHHHTTCCCEEEEE-EECS-STTST------TTC-HH-HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEe-cccc-ccCCC------cCC-HH-HHHHHHHHHHHHHHHCCCEEEEEc
Confidence 35678899 8999999984 3211 11121 123 21 236789999999999999999997
|
| >1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A* | Back alignment and structure |
|---|
Probab=91.10 E-value=0.25 Score=47.28 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=40.3
Q ss_pred hhhhHHH-HcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 47 NSIPDLS-NAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 47 ~~L~ylk-~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
+.++.|+ ++|+|+|-|. +.-. ..+ +.+| +.+ .+.++++|+.|.++||+||||+--
T Consensus 57 ~d~~~l~~~~G~N~VRip-~~~~--~~~------~~~~-~~~--l~~ld~~v~~a~~~Gi~VIld~H~ 112 (364)
T 1g01_A 57 NAFVALSNDWGSNMIRLA-MYIG--ENG------YATN-PEV--KDLVYEGIELAFEHDMYVIVDWHV 112 (364)
T ss_dssp HHHHHHHTTSCCSEEEEE-EESS--SSS------TTTC-TTH--HHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHCCCCEEEEE-eeeC--CCC------CccC-HHH--HHHHHHHHHHHHHCCCEEEEEecc
Confidence 4577885 9999999984 3211 112 3456 543 688999999999999999999764
|
| >3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A* 3a23_A* | Back alignment and structure |
|---|
Probab=90.53 E-value=0.54 Score=48.38 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=43.8
Q ss_pred cHHHHHhhhhHH-----HHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 41 WYNSLKNSIPDL-----SNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 41 ~~~gi~~~L~yl-----k~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
+-+.+.+.++.+ +++|+.+|.|===+.......+ .|+ .+|+.+|-+ .++.|++.+|++|||+.+=+.+-
T Consensus 27 ~~~~~~~~ad~~~~~g~~~~G~~~~~iDdgW~~~~~d~~--g~~-~~~~~~fP~--gl~~l~~~i~~~Glk~gi~~~~~ 100 (614)
T 3a21_A 27 DYSVIKKQVDAFVAAGLPAAGYTYINIDEGWWQGTRDSA--GNI-TVDTAEWPG--GMSAITAYIHSKGLKAGIYTDAG 100 (614)
T ss_dssp CHHHHHHHHHHHHHTTHHHHTCCEEECCTTSCCSCBCTT--CCB-CCCTTTSTT--CHHHHHHHHHHTTCEEEEEEESS
T ss_pred CHHHHHHHHHHHHHcCHHhhCCEEEEECCCcCCCCcCCC--CCE-EECccccCC--cHHHHHHHHHHCCCeeEEEecCC
Confidence 456677777775 9999999987221111110011 233 566234732 59999999999999987766553
|
| >2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A* | Back alignment and structure |
|---|
Probab=90.33 E-value=0.14 Score=47.66 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=38.7
Q ss_pred hhhhHHH-HcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 47 NSIPDLS-NAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 47 ~~L~ylk-~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+.++.|+ ++|+|+|-+ |+.-. ..| +.++ +. +-.+.++++|+.|.++||+||+|+
T Consensus 46 ~d~~~l~~~~G~N~vRi-~~~~~--~~~------~~~~-~~-~~l~~ld~~v~~a~~~Gl~vild~ 100 (306)
T 2cks_A 46 SSLDALAYDWKADIIRL-SMYIQ--EDG------YETN-PR-GFTDRMHQLIDMATARGLYVIVDW 100 (306)
T ss_dssp HHHHHHHHTSCCSEEEE-EEESS--TTS------GGGC-HH-HHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEE-Eeeec--CCC------cccC-HH-HHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4577785 699999998 44311 122 2355 43 225789999999999999999996
|
| >2aam_A Hypothetical protein TM1410; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE UNL; 2.20A {Thermotoga maritima} SCOP: c.1.8.15 | Back alignment and structure |
|---|
Probab=90.32 E-value=0.28 Score=45.78 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCC
Q 014447 172 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206 (424)
Q Consensus 172 ln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~ 206 (424)
+|.++|++|+.|.+.+...++ .|+|||-+|.+..
T Consensus 113 vDi~~~~w~~i~~~rl~~~~~-kG~DGvflDnvD~ 146 (309)
T 2aam_A 113 VKYWYNEWKEIVFSYLDRVID-QGFKGIYLDRIDS 146 (309)
T ss_dssp ECTTSHHHHHHHHHHHHHHHH-TTCSEEEEECTTH
T ss_pred EecCCHHHHHHHHHHHHHHHH-cCCCeEeecccch
Confidence 899999999999999998887 9999999999743
|
| >2x2h_A Alpha-1,4-glucan lyase isozyme 1; anhydrofructose pathway, glycoside hydrolase family 3 starch binding domain; 2.06A {Gracilariopsis lemaneiformis} PDB: 2x2i_A* 2x2j_A* | Back alignment and structure |
|---|
Probab=89.92 E-value=0.1 Score=56.85 Aligned_cols=32 Identities=25% Similarity=0.146 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014447 172 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (424)
Q Consensus 172 ln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (424)
.|+.||++++...+.++.+.+ .|||||=+|+-
T Consensus 513 pDFtnp~a~~WW~~~~k~l~~-~GvDg~W~Dmn 544 (1027)
T 2x2h_A 513 PDWGRPDVAEWWGNNYKKLFS-IGLDFVWQDMT 544 (1027)
T ss_dssp BCTTSTTHHHHHHHTTHHHHT-TTCCEEEECST
T ss_pred cCCCCHHHHHHHHHHHHHHhh-CCCCEEEEcCC
Confidence 678999999999999998886 99999999995
|
| >7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A | Back alignment and structure |
|---|
Probab=89.83 E-value=0.41 Score=44.48 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=39.1
Q ss_pred hhhhHHH-HcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 47 NSIPDLS-NAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 47 ~~L~ylk-~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+-++.|+ ++|+|+|-|. +.. ...|| ..| +. ..+.++++|+.|.++||+||+|+
T Consensus 47 ~~~~~l~~~~G~N~VRip-~~~--~~~~~------~~~-~~--~~~~ld~~v~~a~~~Gi~Vild~ 100 (303)
T 7a3h_A 47 ESMKWLRDDWGINVFRAA-MYT--SSGGY------IDD-PS--VKEKVKEAVEAAIDLDIYVIIDW 100 (303)
T ss_dssp HHHHHHHHHTCCCEEEEE-EES--STTST------TTC-TT--HHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEE-EEe--CCCCc------cCC-HH--HHHHHHHHHHHHHHCCCEEEEEe
Confidence 3567887 7999999984 211 11222 235 54 47899999999999999999998
|
| >3poh_A Endo-beta-N-acetylglucosaminidase F1; TIM barrel, structural genomics, joint center for structural genomics, JCSG; 1.55A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.82 E-value=0.74 Score=45.09 Aligned_cols=58 Identities=21% Similarity=0.372 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCC
Q 014447 94 KSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDID 173 (424)
Q Consensus 94 ~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln 173 (424)
.++|+.+|++|+||+|-+==+|.+... ..+
T Consensus 231 ~~~v~~lq~~glKVllSIgGg~~~~gf-------------------------------------------------~~l- 260 (451)
T 3poh_A 231 ETLLQPLRRRGVKVLLGLLGNHDITGL-------------------------------------------------AQL- 260 (451)
T ss_dssp HHHTHHHHHTTCEEEEEEECCSSSCCT-------------------------------------------------TCB-
T ss_pred HHHHHHHHHCCCEEEEEECcCCCCCCc-------------------------------------------------ccC-
Confidence 678899999999999987555543210 013
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014447 174 HLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (424)
Q Consensus 174 ~~np~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (424)
+++-|+.+.+.++.+++++|.||+-+|-
T Consensus 261 --s~~~r~~Fa~~v~~~v~~yglDGIDiDw 288 (451)
T 3poh_A 261 --SEQGAKDFAREVAQYCKAYNLDGVNYDD 288 (451)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred --CHHHHHHHHHHHHHHHHHhCCCcEEEec
Confidence 5688999999999999999999999995
|
| >4axn_A Chitinase C1; hydrolase; 1.68A {Serratia marcescens} | Back alignment and structure |
|---|
Probab=89.00 E-value=1.4 Score=41.32 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+.-.+.++|++.|++||++|+||+|-+
T Consensus 77 ~~~~~~~~~~~~i~~~~~~g~kvllSi 103 (328)
T 4axn_A 77 PYNLSDTEFRRQVGVLNSQGRAVLISL 103 (328)
T ss_dssp CSSSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 445568899999999999999999854
|
| >2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase); 2.00A {Elizabethkingia meningoseptica} SCOP: c.1.8.5 | Back alignment and structure |
|---|
Probab=88.67 E-value=1.1 Score=41.13 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCC
Q 014447 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPD 171 (424)
Q Consensus 92 dl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (424)
.+.+.|++++++|+||+|-+==+|.+... ..
T Consensus 72 ~~~~~i~~lq~~glKVllSIGG~~~~~g~-------------------------------------------------~~ 102 (289)
T 2ebn_A 72 NRAKYLKPLQDKGIKVILSILGNHDRSGI-------------------------------------------------AN 102 (289)
T ss_dssp THHHHTHHHHHTTCEEEEEEECCSSSCCT-------------------------------------------------TC
T ss_pred chHHHHHHHHhCCCEEEEEeCCCCCCCCe-------------------------------------------------ec
Confidence 35677888999999999987555442110 00
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014447 172 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (424)
Q Consensus 172 ln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (424)
+. ++-|+.+.+.+..+++++|.||+-+|-
T Consensus 103 l~---~~~r~~Fa~sv~~~v~~ygfDGiDiDw 131 (289)
T 2ebn_A 103 LS---TARAKAFAQELKNTCDLYNLDGVFFDD 131 (289)
T ss_dssp BC---HHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CC---HHHHHHHHHHHHHHHHHhCCCcEEEee
Confidence 22 567888999998888889999999995
|
| >2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A* | Back alignment and structure |
|---|
Probab=88.56 E-value=3.8 Score=42.71 Aligned_cols=87 Identities=5% Similarity=-0.028 Sum_probs=59.5
Q ss_pred cCCCCCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHH
Q 014447 17 FLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSL 96 (424)
Q Consensus 17 ~p~~~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~L 96 (424)
.|.+.-+++|...+. ..+ +...+.+.|+.++..+.|.+++-+-= . .+|++ ..+...= |.+ |.+|+++|
T Consensus 124 ~P~f~~RG~m~d~~r-~~~-----s~~~ik~~id~ma~~KlN~~h~hl~D-d-p~~~~--~~wr~~y-P~l-t~~ei~el 191 (716)
T 2cho_A 124 YPSVRYRGVVEGFYG-TPW-----SHQARLSQLKFYGKNKMNTYIYGPKD-D-PYHSA--PNWRLPY-PDK-EAAQLQEL 191 (716)
T ss_dssp CCSSSEEEEEECCSS-SCC-----CHHHHHHHHHHHHHTTCCEEEECCTT-C-TTTST--TGGGSCC-CHH-HHHHHHHH
T ss_pred CCCCcccccccCcCC-CCC-----CHHHHHHHHHHHHHcCCcEEEEeecc-C-ccccc--ccccccC-Chh-hHHHHHHH
Confidence 466777777755432 111 47889999999999999999987621 1 13332 1122122 333 78999999
Q ss_pred HHHHHHcCCEEEEeeeccc
Q 014447 97 IQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 97 v~~aH~~Gi~VilD~v~NH 115 (424)
|+-|+++||.||-.+-+-|
T Consensus 192 v~yA~~rgI~vvpeI~Pg~ 210 (716)
T 2cho_A 192 VAVANENEVDFVWAIHPGQ 210 (716)
T ss_dssp HHHHHHTTCEEEEEECCTT
T ss_pred HHHHHHcCCEEEEeecccc
Confidence 9999999999998885443
|
| >4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A* | Back alignment and structure |
|---|
Probab=88.55 E-value=0.21 Score=47.68 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=37.7
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
.+-++.||++|+|+|-+. +... .+... .+ + ...+.++++|+.|.++||+||+|+
T Consensus 88 ~~di~~ik~~G~N~VRi~-~~~~----~~~~~----~~-~--~~l~~ld~~v~~a~~~Gi~Vild~ 141 (359)
T 4hty_A 88 KKHFEVIRSWGANVVRVP-VHPR----AWKER----GV-K--GYLELLDQVVAWNNELGIYTILDW 141 (359)
T ss_dssp HHHHHHHHHTTCSEEEEE-ECHH----HHHHH----HH-H--HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEe-ccHH----Hhhcc----CC-H--HHHHHHHHHHHHHHHCCCEEEEEc
Confidence 456788999999999985 3211 00000 01 1 126778999999999999999997
|
| >3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=88.46 E-value=0.38 Score=49.28 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=43.3
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCC--CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQ--SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~--~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
-.-+.+.|..+|++|+|+|.+.=.+. .|....| ||. ..+++.+|++.|+++||+||+..-
T Consensus 36 ~e~w~~dl~~mK~~G~N~Vrt~v~W~~hEP~~G~y---df~--------gl~~l~~fl~la~e~GL~VIl~~g 97 (612)
T 3d3a_A 36 KEYWEHRIKMCKALGMNTICLYVFWNFHEPEEGRY---DFA--------GQKDIAAFCRLAQENGMYVIVRPG 97 (612)
T ss_dssp GGGHHHHHHHHHHHTCCEEEEECCHHHHCSSTTCC---CCS--------GGGCHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEcChHHhcCCCCCcc---Chh--------HHHHHHHHHHHHHHCCCEEEEecC
Confidence 35677889999999999999863222 1122222 333 345899999999999999998864
|
| >3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase; HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea} | Back alignment and structure |
|---|
Probab=88.37 E-value=1.9 Score=41.68 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=41.8
Q ss_pred HHHHHhhhhHHHH-----cCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 42 YNSLKNSIPDLSN-----AGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 42 ~~gi~~~L~ylk~-----lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
-+.+.+.++.+++ +|+.+|.|==-+....... -.|+ .+++.+|-+ .++.|++.+|++|||+.+=+-+
T Consensus 25 e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~r~~--~G~~-~~~~~kFP~--Gl~~l~~~i~~~Glk~Giw~~p 96 (397)
T 3a5v_A 25 EQLILDAAKAIASSGLKDLGYNYVIIDDCWQKNERES--SKTL-LADPTKFPR--GIKPLVDDIHNLGLKAGIYSSA 96 (397)
T ss_dssp HHHHHHHHHHHHHHTHHHHTCCEEECCSSCBCSSCCT--TSCC-CBCTTTCTT--CHHHHHHHHHHTTCEEEEEEES
T ss_pred HHHHHHHHHHHHHcCCcccCceEEEECCCcCCCCCCC--CCCe-EEChhcCCc--CHHHHHHHHHHcCCEEEEEecC
Confidence 4556666777766 9999999832222111001 1233 566234632 5999999999999998775543
|
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=88.35 E-value=1.1 Score=40.00 Aligned_cols=108 Identities=14% Similarity=0.156 Sum_probs=73.3
Q ss_pred HHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCC
Q 014447 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR 124 (424)
Q Consensus 45 i~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~ 124 (424)
+.+-|++.|++||++|+++- | +-.+. .++..++|+.+++.|++|+..+ +..++.
T Consensus 87 ~~~yl~~~k~lGf~~iEiS~--------G-----~i~l~------~~~~~~~I~~~~~~G~~v~~Ev-----G~k~~~-- 140 (251)
T 1qwg_A 87 FDEFLNECEKLGFEAVEISD--------G-----SSDIS------LEERNNAIKRAKDNGFMVLTEV-----GKKMPD-- 140 (251)
T ss_dssp HHHHHHHHHHHTCCEEEECC--------S-----SSCCC------HHHHHHHHHHHHHTTCEEEEEE-----CCSSHH--
T ss_pred HHHHHHHHHHcCCCEEEECC--------C-----cccCC------HHHHHHHHHHHHHCCCEEeeec-----cccCCc--
Confidence 44557889999999999983 2 33455 8899999999999999997766 221100
Q ss_pred cceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014447 125 GIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (424)
Q Consensus 125 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (424)
.+ ... -...+++.++..++ -|++=.-+++=
T Consensus 141 -----------------------~~-----------------------~~~---~~~~~I~~~~~~Le-AGA~~ViiEar 170 (251)
T 1qwg_A 141 -----------------------KD-----------------------KQL---TIDDRIKLINFDLD-AGADYVIIEGR 170 (251)
T ss_dssp -----------------------HH-----------------------TTC---CHHHHHHHHHHHHH-HTCSEEEECCT
T ss_pred -----------------------cc-----------------------CCC---CHHHHHHHHHHHHH-CCCcEEEEeee
Confidence 00 001 12367777887787 89988888874
Q ss_pred ------------CCCCHHHHHHHHHhcCCCeEEeee
Q 014447 205 ------------KGYAPSITKVYMENTSPDFAVGEK 228 (424)
Q Consensus 205 ------------~~~~~~~~~~~~~~~~p~~~v~E~ 228 (424)
..+-.+...+++++..+--++-|+
T Consensus 171 EsG~~iGi~~~~g~~r~d~v~~i~~~l~~eklifEA 206 (251)
T 1qwg_A 171 ESGKGKGLFDKEGKVKENELDVLAKNVDINKVIFEA 206 (251)
T ss_dssp TTCCSSTTBCTTSCBCHHHHHHHHTTSCGGGEEEEC
T ss_pred cccCCcccCCCCCCCcHHHHHHHHHhCChhhEEEEC
Confidence 233456777777776544466675
|
| >4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila} | Back alignment and structure |
|---|
Probab=88.32 E-value=0.51 Score=44.13 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=45.4
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCC---CC--------CCCCcccccCCC---CCCCC--CHHHHHHHHHHHHHc
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSV---AP--------QGYMPGRLYDLD---ASKYG--SQADLKSLIQAFRQK 103 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~---~~--------~gY~~~d~~~id---~~~~G--t~edl~~Lv~~aH~~ 103 (424)
.+-..+.+.|+.+|++|+|.|-+-...+.. .. .|-.+.+..... ++.+. ..+.+..++++|.++
T Consensus 34 ~~~~~~~~~l~~~~~~G~N~iR~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~~ 113 (387)
T 4awe_A 34 NDQPDIEKGMTAARAAGLTVFRTWGFNDKNRTYIPTGLPQYGNEGAGDPTNTVFQWFEADGTQTIDVSPFDKVVDSATKT 113 (387)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCEEESSCCTTCSSCCCCCTTCCTTCCCSEEECTTSCEEECCGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCcccCCCccCccccchhhhccccccccchhhhhcccCccchhhhhhHHHHHHHHHHc
Confidence 356778888999999999999984322210 01 111111100000 01111 145688999999999
Q ss_pred CCEEEEeeecc
Q 014447 104 GIKCLADMVIN 114 (424)
Q Consensus 104 Gi~VilD~v~N 114 (424)
||+||+++..+
T Consensus 114 gi~v~~~~~~~ 124 (387)
T 4awe_A 114 GIKLIVALTNN 124 (387)
T ss_dssp TCEEEEECCBS
T ss_pred CCEEEEeeccc
Confidence 99999998654
|
| >2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* | Back alignment and structure |
|---|
Probab=88.00 E-value=3.2 Score=43.05 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=50.5
Q ss_pred CCCCcHHHHHhhhhHHHHcCCCEEEeCC---CCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 37 KAGGWYNSLKNSIPDLSNAGITHVWLPP---PSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 37 ~~~G~~~gi~~~L~ylk~lGv~~I~l~P---i~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
.+|-+......-+|.-+++|+.+|.+=. =++.. +..+ .+-||.++. |.+ |+++|++=||++|++|||
T Consensus 365 ~~g~nte~~K~YIDFAA~~G~eyvLveGwD~GW~~~~~~~~~-~~fd~~~p~-pd~----Dl~eL~~YA~sKGV~iil 436 (738)
T 2d73_A 365 KHSANTANVKRYIDFAAAHGFDAVLVEGWNEGWEDWFGNSKD-YVFDFVTPY-PDF----DVKEIHRYAARKGIKMMM 436 (738)
T ss_dssp CBCCCHHHHHHHHHHHHHTTCSEEEECSCBTTGGGCSSSCCS-SCCCSSCBC-TTC----CHHHHHHHHHHTTCEEEE
T ss_pred ccCCCHHHHHHHHHHHHHcCCCEEEEEeccCCcccccCcccc-ccccccccC-CCC----CHHHHHHHHHhCCCEEEE
Confidence 3456899999999999999999999932 22211 1122 235777777 665 699999999999999997
|
| >1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A* | Back alignment and structure |
|---|
Probab=87.94 E-value=2.8 Score=41.88 Aligned_cols=126 Identities=10% Similarity=0.102 Sum_probs=74.3
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCccccc---------CCC--CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLY---------DLD--ASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~---------~id--~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
+...|.+.||.++..++|.+++-.--. .++.+.+..|- .+. +..+=|.+|++++|+-|.++||+||-
T Consensus 172 ~~~~ik~~id~ma~~KlN~lh~HltDd--q~wriei~~~P~Lt~~ga~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIP 249 (512)
T 1jak_A 172 GVDEVKRYIDRVARYKYNKLHLHLSDD--QGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVP 249 (512)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEECBCS--SCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeccC--CCceehhhhhHHHHhhcCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 478889999999999999998864211 12222222221 111 01122799999999999999999998
Q ss_pred ee-ecccCCCCCCCCCcceeecCC-CCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 014447 110 DM-VINHRTAERKDGRGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWM 187 (424)
Q Consensus 110 D~-v~NH~~~~~~~~~~~~~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~ 187 (424)
.+ ++-|+..--.. |..+.. +.. . ..+... . ...-.||..+|++.+++.+.+
T Consensus 250 EID~PGH~~a~l~a----ypeL~~~~~~--~------------~~~~~~--------~-~~~~~l~~~~~~t~~fl~~v~ 302 (512)
T 1jak_A 250 EIDMPGHTNAALAS----YAELNCDGVA--P------------PLYTGT--------K-VGFSSLCVDKDVTYDFVDDVI 302 (512)
T ss_dssp ECCCSSSCHHHHHH----CGGGSTTSCC--C------------CCCCSC--------C-CSCCCCCTTCHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHh----CHHhcCcCCC--C------------cccccc--------C-cCCcccCCCCHHHHHHHHHHH
Confidence 87 56676421000 000000 000 0 000000 0 011238999999999999999
Q ss_pred HHHHHhcC
Q 014447 188 NWLKTEIG 195 (424)
Q Consensus 188 ~~w~~~~g 195 (424)
...++-|-
T Consensus 303 ~Ev~~lFp 310 (512)
T 1jak_A 303 GELAALTP 310 (512)
T ss_dssp HHHHHTCC
T ss_pred HHHHHhCC
Confidence 98887444
|
| >2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A* | Back alignment and structure |
|---|
Probab=87.88 E-value=2.9 Score=41.17 Aligned_cols=117 Identities=13% Similarity=-0.062 Sum_probs=69.8
Q ss_pred hhhhHHHHcCCCEEEeCCCCC-CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCc
Q 014447 47 NSIPDLSNAGITHVWLPPPSQ-SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG 125 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~-~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~ 125 (424)
+-.+-+|+.|+++|.|+-=+- +-.-+.-..+++..++ ... ..+=+++|++||+++||++.+=+-. .
T Consensus 109 ~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~ns~~-~~p-krDlv~El~~A~rk~Glk~GlY~S~--~--------- 175 (455)
T 2zxd_A 109 EWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVK-RGP-KRDLVGDLAKAVREAGLRFGVYYSG--G--------- 175 (455)
T ss_dssp HHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTT-STT-CSCHHHHHHHHHHHTTCEEEEEEEC--S---------
T ss_pred HHHHHHHHhCCCEEEEEeeccCCccccCCCCCCCcccc-cCC-CCChHHHHHHHHHHcCCeEEEEecC--C---------
Confidence 345788999999999875332 1111111122444444 222 3477999999999999999983220 1
Q ss_pred ceeecCCCCCCCCCCCCCc-ccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014447 126 IYCIFEGGTSDDRLDWGPS-FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (424)
Q Consensus 126 ~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (424)
.+|+.. .+.. +....+ .. .-.++...+++...++.++..+|.|++=+|..
T Consensus 176 -------------~dW~~p~~~~~------~~~~~y------~~----~~~~~~y~~~~~~Ql~ELlt~Y~pd~lWfDg~ 226 (455)
T 2zxd_A 176 -------------LDWRFTTEPIR------YPEDLS------YI----RPNTYEYADYAYKQVMELVDLYLPDVLWNDMG 226 (455)
T ss_dssp -------------CCGGGCCSCCC------SGGGGG------TC----SCCSHHHHHHHHHHHHHHHHHHCCSEEEEESC
T ss_pred -------------ccccCcccccc------cccccc------cC----CCccHHHHHHHHHHHHHHHhhcCCcEEEECCC
Confidence 112100 0000 000000 00 01367889999999999999999999999975
Q ss_pred C
Q 014447 205 K 205 (424)
Q Consensus 205 ~ 205 (424)
.
T Consensus 227 ~ 227 (455)
T 2zxd_A 227 W 227 (455)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A* | Back alignment and structure |
|---|
Probab=87.35 E-value=2.4 Score=41.27 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=43.1
Q ss_pred cHHHHHhhhhHH-----HHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 41 WYNSLKNSIPDL-----SNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 41 ~~~gi~~~L~yl-----k~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+-+.+.+.++.+ +++|+.+|.|===+...... ...|+ .+++.+|-+ .++.|++.+|++|||+.+=+
T Consensus 27 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~~d--~~G~~-~~~~~kFP~--Gl~~l~~~i~~~Glk~Giw~ 97 (417)
T 1szn_A 27 DESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGR--VDGHI-APNATRFPD--GIDGLAKKVHALGLKLGIYS 97 (417)
T ss_dssp CHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCTTCC--BTTBC-CBCTTTCTT--HHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHcCchhhCCCEEEECCCccCCCCC--CCCCE-EECcccCCc--CHHHHHHHHHHcCCEEEEEe
Confidence 456677777777 99999999973222111111 11233 455334643 79999999999999987744
|
| >2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A* | Back alignment and structure |
|---|
Probab=87.28 E-value=4.4 Score=39.83 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=79.6
Q ss_pred HhhhhHHHHcCCCEEEeCCCCC-CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCC
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQ-SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR 124 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~-~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~ 124 (424)
.+-.+-+|+.|+.+|.|+-=+- +..-+.-..++|...+ ..++ .+=+++|++||+++||++.+=+-+-
T Consensus 81 ~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~n~~~-~~~k-rDlv~el~~A~rk~Glk~GlY~S~~---------- 148 (450)
T 2wvv_A 81 KKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVAN-TPYK-RDILGELVKAYNDEGIDVHFYFSVM---------- 148 (450)
T ss_dssp HHHHHHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGG-STTC-SCHHHHHHHHHHHTTCEEEEEEESC----------
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCccccCCCCCCCcccc-CCCC-CChHHHHHHHHHHcCCeEEEEecHH----------
Confidence 3446788999999999885332 1111222233444444 3333 5779999999999999998754431
Q ss_pred cceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCC-----CHHHHHHHHHHHHHHHHhc-CCCe
Q 014447 125 GIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHL-----NPRVQKELSDWMNWLKTEI-GFDG 198 (424)
Q Consensus 125 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~-----np~v~~~l~~~~~~w~~~~-gvDG 198 (424)
+|+...+.. +.++. .++..+++...++.++..+ .+|+
T Consensus 149 ---------------dw~~p~y~~----------------------~~~~~~~~~~~~~y~~~~~~Ql~ELlt~YG~~d~ 191 (450)
T 2wvv_A 149 ---------------DWSNPDYRY----------------------DIKSKEDSIAFSRFLEFTDNQLKELATRYPTVKD 191 (450)
T ss_dssp ---------------CTTCTTCCS----------------------SCCSHHHHHHHHHHHHHHHHHHHHHHHHCTTCCE
T ss_pred ---------------HhcCCcccc----------------------cccccccccchHHHHHHHHHHHHHHHHcCCCcCE
Confidence 122100000 00111 1345677888889999999 6999
Q ss_pred EEecccCCCC----HHHHHH---HHHhcCCCeEEeeec
Q 014447 199 WRFDFVKGYA----PSITKV---YMENTSPDFAVGEKW 229 (424)
Q Consensus 199 fR~D~a~~~~----~~~~~~---~~~~~~p~~~v~E~~ 229 (424)
+=+|....-+ .-...+ .+++..|..+|.--+
T Consensus 192 lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vv~~r~ 229 (450)
T 2wvv_A 192 FWFDGTWDASVKKNGWWTAHAEQMLKELVPGVAINSRL 229 (450)
T ss_dssp EEEESCCSHHHHHTHHHHHHHHHHHHHHSTTCEEBGGG
T ss_pred EEEcCCCCcCcchhhHHHHHHHHHHHHhCCcEEEEccc
Confidence 9999865432 112222 356677855554433
|
| >2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A* | Back alignment and structure |
|---|
Probab=87.27 E-value=1.7 Score=43.96 Aligned_cols=49 Identities=20% Similarity=0.340 Sum_probs=37.6
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
..+.+-+..+|++|+|+|-+ +.++ |.-+. .+++++|++.||+||+|+-.
T Consensus 87 e~~~rDi~LmK~~GiN~VRv-----------------y~~~-P~~~~----d~~ldl~~~~GIyVIle~~~ 135 (555)
T 2w61_A 87 KICLRDIPFLKMLGVNTLRV-----------------YAID-PTKSH----DICMEALSAEGMYVLLDLSE 135 (555)
T ss_dssp HHHHHHHHHHHHHTCSEEEE-----------------CCCC-TTSCC----HHHHHHHHHTTCEEEEESCB
T ss_pred HHHHHHHHHHHHcCCCEEEE-----------------eccC-CCCCh----HHHHHHHHhcCCEEEEeCCC
Confidence 45666788999999999998 1344 44443 46788899999999999753
|
| >3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=86.05 E-value=2.9 Score=41.31 Aligned_cols=130 Identities=12% Similarity=0.068 Sum_probs=80.7
Q ss_pred HHhhhhHHHHcCCCEEEeCCCCC-CCCCCCCCcccccCCCCCCC--CCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCC
Q 014447 45 LKNSIPDLSNAGITHVWLPPPSQ-SVAPQGYMPGRLYDLDASKY--GSQADLKSLIQAFRQKGIKCLADMVINHRTAERK 121 (424)
Q Consensus 45 i~~~L~ylk~lGv~~I~l~Pi~~-~~~~~gY~~~d~~~id~~~~--Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~ 121 (424)
..+-.+-+|+.|..+|.|+-=+- +..-+.-..++|...+ ..+ |..+=+++|++||+++||++.+=+-+
T Consensus 56 ~~~w~~~~k~aGaky~v~takHHdGf~lw~S~~t~~~~~~-~p~~~~k~Div~e~~~A~r~~Gl~~g~Y~s~-------- 126 (469)
T 3eyp_A 56 CRQWMQTLKAAGIPAAILTAKHADGFCLWPSKYTDYSVKN-AAWKNGKGDVVREFVDACEEYGLKAGIYLGP-------- 126 (469)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECTTCCBSSCCTTCSSBGGG-SSGGGGTCCHHHHHHHHHHHHTCEEEEEECS--------
T ss_pred HHHHHHHHHHcCCCEEEEEEEeCCCccccCCCCCCccccc-CcccCCCCCHHHHHHHHHHHcCCeEEEEeCh--------
Confidence 44567789999999999875332 1111222234444444 433 33478999999999999999883221
Q ss_pred CCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEE
Q 014447 122 DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIG-FDGWR 200 (424)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~g-vDGfR 200 (424)
.+|.... . -+|..+.-.+++...++.++..+| |+.+=
T Consensus 127 -----------------~dw~~~~----~---------------------~~y~~~~Y~~~~~~Ql~ELlt~Yg~i~~lW 164 (469)
T 3eyp_A 127 -----------------HDRHEHL----S---------------------PLYTTERYKEYYAHQLGELMSDYGKIWETW 164 (469)
T ss_dssp -----------------SCHHHHT----S---------------------TTCCHHHHHHHHHHHHHHHHHSSCCCCEEE
T ss_pred -----------------hHhCCCc----C---------------------cccCcHHHHHHHHHHHHHHHhcCCcccEEE
Confidence 1121100 0 012235567788888888888898 68999
Q ss_pred ecccCCC--CH---HHHHHHHHhcCCCeEE
Q 014447 201 FDFVKGY--AP---SITKVYMENTSPDFAV 225 (424)
Q Consensus 201 ~D~a~~~--~~---~~~~~~~~~~~p~~~v 225 (424)
+|.+..- .. .-|.+++++..|..++
T Consensus 165 ~Dg~~~~~~~~~~~~~w~~~i~~~qP~~vi 194 (469)
T 3eyp_A 165 WDGAGADELTTPVYRHWYKIVREKQPDCVI 194 (469)
T ss_dssp CCCTTCTTCCHHHHHHHHHHHHHHCTTCEE
T ss_pred eCCCCCCCccchhHhHHHHHHHHHCcCcEE
Confidence 9987542 22 1245678888894444
|
| >3kzs_A Glycosyl hydrolase family 5; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=85.98 E-value=2.1 Score=42.18 Aligned_cols=69 Identities=12% Similarity=0.105 Sum_probs=50.0
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCC------cccccCCCCCC--CCCHHHHHHHHHHHHHcCCEEEE
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM------PGRLYDLDASK--YGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~------~~d~~~id~~~--~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
-+...+..-|+..|+.|||.|+++=+.+.+....|. ..||.+++ +. ..--+-+.+.|+.|+++||.+-|
T Consensus 49 l~~~e~~~yL~~R~~qGFNvIq~~vl~~~p~~n~~g~~pf~~~~df~~~n-~pn~~~YF~h~d~~I~~a~~~Gi~~~L 125 (463)
T 3kzs_A 49 LNRDEAEYYLEQCKRRGYNVIQVQTLNNVPSMNIYGQYSMTDGYNFKNIN-QKGVYGYWDHMDYIIRTAAKKGLYIGM 125 (463)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEESCSSSSCBCTTSCBSCSSTTCCTTCC-CTTCCCHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeecCCCCCCcCCCCCcCCCcccccCC-CcCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 456677788999999999999997653322211111 14677777 42 35578899999999999999887
|
| >1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase (glucosidase); 1.90A {Streptomyces plicatus} SCOP: c.1.8.5 PDB: 1c90_A 1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A 1c93_A | Back alignment and structure |
|---|
Probab=85.39 E-value=2.4 Score=38.61 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014447 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (424)
Q Consensus 175 ~np~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (424)
.+++-|+.+++.+..+++++|+||+-+|=
T Consensus 103 ~s~~~r~~f~~s~~~~~~~~~fDGiDiDw 131 (271)
T 1edt_A 103 PSQQAASAFAKQLSDAVAKYGLDGVDFDD 131 (271)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEec
Confidence 36888999999988888889999999995
|
| >4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A | Back alignment and structure |
|---|
Probab=85.34 E-value=0.44 Score=48.29 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=39.4
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCC-C--CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPS-Q--SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~-~--~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD 110 (424)
.-+.+.|..+|++|+|+|.+ +|+ . .|... ..||. ...|+.++++.|+++||+|||=
T Consensus 32 ~~W~d~l~kmKa~G~NtV~~-yv~W~~hEP~~G---~fdF~--------g~~dL~~fl~~a~~~Gl~Vilr 90 (595)
T 4e8d_A 32 EDWYHSLYNLKALGFNTVET-YVAWNLHEPCEG---EFHFE--------GDLDLEKFLQIAQDLGLYAIVR 90 (595)
T ss_dssp GGHHHHHHHHHHTTCCEEEE-ECCHHHHCSBTT---BCCCS--------GGGCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEE-eccHHHcCCCCC---eeccc--------chhhHHHHHHHHHHcCCEEEEe
Confidence 34567899999999999998 333 1 11111 11222 2347999999999999999995
|
| >4ac1_X Endo-N-acetyl-beta-D-glucosaminidase; hydrolase, glycoside hydrolase family 18, deglycosylation; HET: NAG; 1.30A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=85.19 E-value=7.1 Score=35.70 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=60.2
Q ss_pred HcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCC
Q 014447 54 NAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGG 133 (424)
Q Consensus 54 ~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~ 133 (424)
..++|+|.+.-+.-. ..|+-. +.+.. |.-...+.+.+=|++||++|+||+|=+ |.-.. +.|..+
T Consensus 30 ~~~~THi~~af~~~~--~~g~i~--~~d~~-p~~~~~~~l~~~i~~~q~~g~Kvllsi-----GG~~~---g~~~~~--- 93 (283)
T 4ac1_X 30 GIALTHLIVCSFHIN--QGGVVH--LNDFP-PDDPHFYTLWNETITMKQAGVKVMGMV-----GGAAP---GSFNTQ--- 93 (283)
T ss_dssp SCCCCEEEEEEEECC--TTSCCE--ETTBC-TTSGGGHHHHHHHHHHHHTTCEEEEEE-----ETTSS---CSSSTT---
T ss_pred CCCccEEEEEEEEEC--CCCeEE--ECCCC-ccchHHHHHHHHHHHHHcCCCEEEEEE-----cCCCC---CCCccc---
Confidence 367999987755433 233311 22222 333333566677899999999999876 21100 000000
Q ss_pred CCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHH
Q 014447 134 TSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS 210 (424)
Q Consensus 134 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~ 210 (424)
.-+-.+++.++.+.+.+...++++|+||+-+|-=.....+
T Consensus 94 -------------------------------------~~~~~~~~~~~~f~~~~~~~~~~~~~dG~D~d~e~~~~~~ 133 (283)
T 4ac1_X 94 -------------------------------------TLDSPDSATFEHYYGQLRDAIVNFQLEGMDLDVEQPMSQQ 133 (283)
T ss_dssp -------------------------------------TTTCSSHHHHHHHHHHHHHHHHHTTCSEEEEECCSCBCHH
T ss_pred -------------------------------------ccccccHHHHHHHHHHHHHHHHHcCCCceEeecccCCCHH
Confidence 0122345666666677766666799999999986665544
|
| >3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase, hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A* 3vtr_A* | Back alignment and structure |
|---|
Probab=85.15 E-value=9.8 Score=38.46 Aligned_cols=125 Identities=10% Similarity=0.168 Sum_probs=75.2
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCC--------CCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDL--------DASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~i--------d~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
+...|.+.||.++..++|.+++---- ..++.+.+..|-.+ + ..| |.+|++++|+-|.++||+||-.+-
T Consensus 202 ~~~~ik~~id~mA~~KlN~lH~HltD--dqgwrlei~~~P~Lt~~Ga~~~~-~~Y-T~~di~eiv~yA~~rgI~VIPEId 277 (572)
T 3ozo_A 202 SIESIKRTIEAMAAVKLNTFHWHITD--SQSFPFVTTKRPNLYKFGALSPQ-KVY-TKAAIREVVRFGLERGVRVLPEFD 277 (572)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCC--SSCCCBCCSSSHHHHHHHSSSSS-SCB-CHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCceEEEEeec--CcCceeccccCcchhccCCcCCC-CCc-CHHHHHHHHHHHHHhCCceeeeec
Confidence 47889999999999999999986421 12334443333221 2 222 799999999999999999996653
Q ss_pred -cccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 014447 113 -INHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLK 191 (424)
Q Consensus 113 -~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~ 191 (424)
+-|+...-. .+. ...|.+...|...+.. +..-.||..+|++.+++.+.+...+
T Consensus 278 ~PGH~~a~~~--~~~-----------------l~~~~~~~~~~~~~~~-------~~~~~l~~~~~~t~~fl~~v~~Ev~ 331 (572)
T 3ozo_A 278 APAHVGEGWQ--DTD-----------------LTVCFKAEPWKSYCVE-------PPCGQLNPTKDELYQYLEDIYSDMA 331 (572)
T ss_dssp ESSSCCTTCT--TTT-----------------CEECTTCSSGGGTCSS-------SSCCEECTTCTHHHHHHHHHHHHHH
T ss_pred cchHHHHHhc--Cch-----------------hhhccCcCCccccccC-------CCCcccCCCChhHHHHHHHHHHHHH
Confidence 466642100 000 0001111111111000 0112388999999999999988888
Q ss_pred HhcC
Q 014447 192 TEIG 195 (424)
Q Consensus 192 ~~~g 195 (424)
+-|.
T Consensus 332 ~lF~ 335 (572)
T 3ozo_A 332 EVFD 335 (572)
T ss_dssp HHCC
T ss_pred HhcC
Confidence 7554
|
| >3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A* | Back alignment and structure |
|---|
Probab=84.87 E-value=13 Score=36.59 Aligned_cols=131 Identities=13% Similarity=0.036 Sum_probs=77.9
Q ss_pred HHHhhhhHHHHcCCCEEEeCCCCC-CCCCCCCCcccccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeeecccCCCCCC
Q 014447 44 SLKNSIPDLSNAGITHVWLPPPSQ-SVAPQGYMPGRLYDLDASKYG-SQADLKSLIQAFRQKGIKCLADMVINHRTAERK 121 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi~~-~~~~~gY~~~d~~~id~~~~G-t~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~ 121 (424)
+..+-.+-+|+.|+++|.|+-=+- +..-+.-..++|..-..|..| ..+=+++|++||+++||++-+=+-+
T Consensus 63 d~~~W~~~~k~aGakyvvlt~kHHdGF~lw~S~~t~~~v~~~p~~~~krDiv~el~~A~r~~gl~~g~Y~S~-------- 134 (478)
T 3ues_A 63 DVDQWMDALVAGGMAGVILTCKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRHGLKFGVYLSP-------- 134 (478)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEECTTCCBSSCCTTCSCBGGGSSGGGGTCCHHHHHHHHHHHTTCEEEEEECS--------
T ss_pred CHHHHHHHHHHcCCCEEEEeEEecCCccccCCCCCCcccccCCccCCCCCHHHHHHHHHHHcCCeEEEEeCh--------
Confidence 344567789999999999875332 111111122333211102222 3477999999999999999873321
Q ss_pred CCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEE
Q 014447 122 DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIG-FDGWR 200 (424)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~g-vDGfR 200 (424)
.+|.... | -..+.-.+++...++.++..|| ++++=
T Consensus 135 -----------------~d~~~~~-------y--------------------~~~~~y~~~~~~ql~EL~~~Yg~~~~~W 170 (478)
T 3ues_A 135 -----------------WDRTEES-------Y--------------------GKGKAYDDFYVGQLTELLTQYGPIFSVW 170 (478)
T ss_dssp -----------------CCSSCTT-------T--------------------TSSHHHHHHHHHHHHHHHHSSSCCSEEE
T ss_pred -----------------HHhCCcc-------c--------------------CchHHHHHHHHHHHHHHHhcCCcceEEE
Confidence 1222110 0 0135567788888999998899 57999
Q ss_pred ecccCCC---------CHHHHHHHHHhcCCCeEEe
Q 014447 201 FDFVKGY---------APSITKVYMENTSPDFAVG 226 (424)
Q Consensus 201 ~D~a~~~---------~~~~~~~~~~~~~p~~~v~ 226 (424)
+|.+..- ..+-+.+++++..|..++.
T Consensus 171 ~Dg~~~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~ 205 (478)
T 3ues_A 171 LDGANGEGKNGKTQYYDWDRYYNVIRSLQPDAVIS 205 (478)
T ss_dssp ECCCCCCCTTSCCCCCCHHHHHHHHHHHCTTSEEE
T ss_pred eeCCCCCCCccchhhhhHHHHHHHHHHHCcCEEEE
Confidence 9986532 1223444577778844454
|
| >3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A* | Back alignment and structure |
|---|
Probab=84.87 E-value=0.49 Score=48.46 Aligned_cols=57 Identities=12% Similarity=0.189 Sum_probs=40.6
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCCC---CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPSQ---SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~~---~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
.-+.+.|..+|++|+|+|.+ ++.= .|...-| || ....||.++++.|+++||+|||..
T Consensus 40 ~~W~d~l~kmKa~G~NtV~~-yv~W~~hEP~~G~f---dF--------~g~~DL~~fl~~a~~~GL~ViLr~ 99 (654)
T 3thd_A 40 FYWKDRLLKMKMAGLNAIQT-YVPWNFHEPWPGQY---QF--------SEDHDVEYFLRLAHELGLLVILRP 99 (654)
T ss_dssp GGHHHHHHHHHHTTCSEEEE-ECCHHHHCSBTTBC---CC--------SGGGCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEE-EechhhcCCCCCcc---Cc--------cchHHHHHHHHHHHHcCCEEEecc
Confidence 35667899999999999999 4431 1111111 22 234479999999999999999974
|
| >3ian_A Chitinase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 1.75A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=84.62 E-value=2.8 Score=39.22 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
|.--+.+++.+.+++||++|+||++-+
T Consensus 60 ~~~~~~~~~~~~i~~~k~~g~kvllsi 86 (321)
T 3ian_A 60 PYNKTDTEFRAEISKLNAEGKSVLIAL 86 (321)
T ss_dssp CSSSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCcccchhHHHHHHHHHHCCCEEEEEe
Confidence 443456789999999999999999865
|
| >1ug6_A Beta-glycosidase; glucosidase, atomic resolution, riken structural genomics/PR initiative, RSGI, structural genomics, hydrolase; 0.99A {Thermus thermophilus} SCOP: c.1.8.4 PDB: 1np2_A | Back alignment and structure |
|---|
Probab=83.64 E-value=1.4 Score=43.06 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=45.6
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCC-CC-----HHHHHHHHHHHHHcCCEEEEeee
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKY-GS-----QADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~-Gt-----~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
...+.-..+-++.+|++|++++-++=- +..|- |.- |. .+-++++|++|+++||++|+++.
T Consensus 53 ~D~Y~~~~eDi~lm~~~G~~~~R~si~-------------W~Ri~-P~g~g~~n~~gl~~y~~~id~l~~~GI~p~vtL~ 118 (431)
T 1ug6_A 53 CDHYRRYEEDIALMQSLGVRAYRFSVA-------------WPRIL-PEGRGRINPKGLAFYDRLVDRLLASGITPFLTLY 118 (431)
T ss_dssp TCHHHHHHHHHHHHHHHTCCEEEEECC-------------HHHHS-TTSSSCCCHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ccchhhhHHHHHHHHHcCCCEEEcccC-------------HHHcc-cCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 344667888899999999999998632 22333 322 22 56789999999999999999986
|
| >1eok_A Endo-beta-N-acetylglucosaminidase F3; alpha/beta-barrel, hydrolase; 1.80A {Elizabethkingia meningoseptica} SCOP: c.1.8.5 PDB: 1eom_A* | Back alignment and structure |
|---|
Probab=82.37 E-value=1.6 Score=40.25 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEee
Q 014447 89 SQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
..+++++.|++||++|+||+|-+
T Consensus 64 ~~~~~~~~i~~~q~~g~KVllSI 86 (290)
T 1eok_A 64 SYKDLDTQIRSLQSRGIKVLQNI 86 (290)
T ss_dssp SHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cHHHHHHHHHHHHhCCCEEEEEe
Confidence 45778888999999999999866
|
| >3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=81.99 E-value=4.6 Score=37.20 Aligned_cols=78 Identities=13% Similarity=0.133 Sum_probs=48.7
Q ss_pred cCCCCCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccccCCCCCCCCCHHHHHH
Q 014447 17 FLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQADLKS 95 (424)
Q Consensus 17 ~p~~~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~edl~~ 95 (424)
.++-+...+-+|.+.+...- -.++.+.|+.++++|+++|+|.+..... ..+++.+.+ -+.++.++
T Consensus 15 ~~~~~~~~~g~~~~s~~~~~-----~~~l~~~l~~aa~~G~~~VEl~~~~~~~~~~~~~~p~~---------~~~~~~~~ 80 (305)
T 3obe_A 15 SSATAGKKMGLQTYSLGQEL-----LQDMPNGLNRLAKAGYTDLEIFGYREDTGKFGDYNPKN---------TTFIASKD 80 (305)
T ss_dssp CTTCCCCCCEEEGGGGTHHH-----HTTHHHHHHHHHHHTCCEEEECCBCTTTCCBCCC-------------CCCBCHHH
T ss_pred cccccCCceEEEEEEchhhh-----hcCHHHHHHHHHHcCCCEEEecccccccccccCcCccc---------ccccCHHH
Confidence 45566667888888754110 1367889999999999999998652211 112332222 12334666
Q ss_pred HHHHHHHcCCEEE
Q 014447 96 LIQAFRQKGIKCL 108 (424)
Q Consensus 96 Lv~~aH~~Gi~Vi 108 (424)
+.+++.++||+|.
T Consensus 81 l~~~l~~~GL~i~ 93 (305)
T 3obe_A 81 YKKMVDDAGLRIS 93 (305)
T ss_dssp HHHHHHHTTCEEE
T ss_pred HHHHHHHCCCeEE
Confidence 7777888999986
|
| >3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida hydrolase; HET: NAG BTB; 1.95A {Saccharomyces cerevisiae} PDB: 3lrl_A* 3lrm_A* | Back alignment and structure |
|---|
Probab=81.78 E-value=3.2 Score=40.91 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=40.8
Q ss_pred HHHHhhhhHHHH-----cCCCEEEeCCCCCC-CCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 43 NSLKNSIPDLSN-----AGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 43 ~gi~~~L~ylk~-----lGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
+.+.+.++.+++ +|+.+|.|==-+.. ....| ++ .+|+.+|-+ .++.|++.+|++|||+-+=+.+
T Consensus 47 ~~i~~~Ad~~~~~Gl~~~GyeyvvIDDGW~~~rd~~G----~~-~~d~~kFP~--Glk~Lad~ih~~GlKfGIw~~p 116 (479)
T 3lrk_A 47 QLLLDTADRISDLGLKDMGYKYIILDDCWSSGRDSDG----FL-VADEQKFPN--GMGHVADHLHNNSFLFGMYSSA 116 (479)
T ss_dssp HHHHHHHHHHHHTTCGGGTCCEEECCSSCEEEECTTS----CE-EECTTTCTT--CHHHHHHHHHHTTCEEEEEEES
T ss_pred HHHHHHHHHHHhcCccccCceEEEECCccccccCCCC----CE-ecChhhcCC--CHHHHHHHHHHCCCeeEEEecC
Confidence 456666676766 79988876432221 01112 22 344345543 6999999999999999887766
|
| >1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B* | Back alignment and structure |
|---|
Probab=81.44 E-value=3.5 Score=41.14 Aligned_cols=73 Identities=14% Similarity=0.208 Sum_probs=52.0
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCC--------CCCCCCCHHHHHHHHHHHHHcCCEEEEee-
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDL--------DASKYGSQADLKSLIQAFRQKGIKCLADM- 111 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~i--------d~~~~Gt~edl~~Lv~~aH~~Gi~VilD~- 111 (424)
+...|.+.||.++..++|.+++-.-=. .++.|.+..|-.+ . ..| |.+|++++|+-|.++||+||-.+
T Consensus 166 ~~~~ik~~id~ma~~KlN~lh~HltDd--q~wr~e~~~~P~Lt~~Ga~~~~-~~Y-T~~di~eiv~yA~~rgI~VIPEID 241 (507)
T 1now_A 166 PVKIILKTLDAMAFNKFNVLHWHIVDD--QSFPYQSITFPELSNKGSYSLS-HVY-TPNDVRMVIEYARLRGIRVLPEFD 241 (507)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCCS--SCCCBCCSSCHHHHHHHSSSTT-SCB-CHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeccC--ccceeeccchhhhhcccCcCCC-CCC-CHHHHHHHHHHHHHcCCEEEEccC
Confidence 378888999999999999998754211 1233333322221 2 223 78999999999999999999877
Q ss_pred ecccCC
Q 014447 112 VINHRT 117 (424)
Q Consensus 112 v~NH~~ 117 (424)
++-|+.
T Consensus 242 ~PGH~~ 247 (507)
T 1now_A 242 TPGHTL 247 (507)
T ss_dssp ESSSCT
T ss_pred CchhHH
Confidence 467775
|
| >1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme, thermostability, TIM barrel, alkylglucosides; 2.50A {Pyrococcus horikoshii} SCOP: c.1.8.4 | Back alignment and structure |
|---|
Probab=81.04 E-value=0.78 Score=44.82 Aligned_cols=65 Identities=11% Similarity=0.207 Sum_probs=43.8
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
...+.-..+-++.+|++|++++-++=-+.-.-+.+ -.+| ....+-++++|++|+++||++|+++.
T Consensus 46 ~d~Y~~~~eDi~lm~~~G~~~~R~si~W~ri~P~~------g~~n---~~gl~~yd~lid~l~~~GI~pivtL~ 110 (423)
T 1vff_A 46 CNHWELYRDDIQLMTSLGYNAYRFSIEWSRLFPEE------NKFN---EDAFMKYREIIDLLLTRGITPLVTLH 110 (423)
T ss_dssp TCHHHHHHHHHHHHHHHTCCEEEEECCHHHHCSBT------TBCC---HHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ccchhccHHHHHHHHHcCCCEEEeecCHHHhCCCC------CCcC---HHHHHHHHHHHHHHHHCCCEEEEEcc
Confidence 34567778889999999999999863221000111 0222 11233569999999999999998886
|
| >4f9d_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; family 4 carbohydrate esterase, TIM barrel, hydrolase, deace carbohydrate/sugar binding; HET: MES; 1.90A {Escherichia coli} PDB: 4f9j_A* | Back alignment and structure |
|---|
Probab=80.81 E-value=3.2 Score=42.47 Aligned_cols=141 Identities=14% Similarity=0.157 Sum_probs=83.5
Q ss_pred HHHhhhhHHHHcCCCEEEeCCCCCCCC----CCCCCcccccCCCCCCCCCHHHHHHHH-HHHHHcCCEEEEeeecccCCC
Q 014447 44 SLKNSIPDLSNAGITHVWLPPPSQSVA----PQGYMPGRLYDLDASKYGSQADLKSLI-QAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi~~~~~----~~gY~~~d~~~id~~~~Gt~edl~~Lv-~~aH~~Gi~VilD~v~NH~~~ 118 (424)
.+-.-|+.|+++|+++|+|-.+..-.+ ..-|-|..+.-+. .+-|-+.+ +..+++|++|..=+.. .+-
T Consensus 298 nl~~li~ri~~~g~~~V~lqaf~dp~gdg~~~~~yfpn~~~p~~------~Dlf~~v~wql~~r~~v~vyAWmp~--l~~ 369 (618)
T 4f9d_A 298 NIDVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRLLPMK------ADIFSRVAWQLRTRSGVNIYAWMPV--LSW 369 (618)
T ss_dssp HHHHHHHHHHHTTCCEEEEECEECTTCSSCBCEESSCCSSSCBS------CSCHHHHHHHHHHHHCCEEEEEECS--SCB
T ss_pred hHHHHHHHHHHcCCCEEEEEEEEcCCCCcccccccCCCCCcchh------hhhHHHHHHHHhhhcCCEEEEeeeh--hhc
Confidence 455567899999999999988754211 1235555444333 33477777 6688999999988766 332
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCCcc-cccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 014447 119 ERKDGRGIYCIFEGGTSDDRLDWGPSF-ICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (424)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvD 197 (424)
+-.. .......|.... ..... -....-|.--||++|+.+.+..+-+.....+|
T Consensus 370 ~~~~-----------~~~~~~~~~~~~~~~~~~---------------~~~~~~lsp~~~~~~~~~~~iy~dl~~~~~~d 423 (618)
T 4f9d_A 370 DLDP-----------TLTRVKYLPTGEKKAQIH---------------PEQYHRLSPFDDRVRAQVGMLYEDLAGHAAFD 423 (618)
T ss_dssp CCCT-----------TSCBCCCCGGGHHHHHTC---------------GGGGGCBCTTCHHHHHHHHHHHHHHHHHCCCS
T ss_pred cccc-----------ccchhhhhhcccccCCcC---------------cccccccCCCCHHHHHHHHHHHHHHHhhCCCC
Confidence 2100 000011111000 00000 00022377889999999999999999855999
Q ss_pred eEEecc--c----CCCCHHHHHHHHHh
Q 014447 198 GWRFDF--V----KGYAPSITKVYMEN 218 (424)
Q Consensus 198 GfR~D~--a----~~~~~~~~~~~~~~ 218 (424)
|+=+|- + ....+..++.+.+.
T Consensus 424 Gilf~dd~~l~d~ed~s~~a~~~~~~~ 450 (618)
T 4f9d_A 424 GILFHDDALLSDYEDASAPAITAYQQA 450 (618)
T ss_dssp EEEECTTCCCCTTCCCSHHHHHHHHHT
T ss_pred eEEEcCccccccccccCHHHHHHHHHc
Confidence 999954 3 22345555665433
|
| >2o9p_A Beta-glucosidase B; family 1 glycoside hydrolase; 2.10A {Paenibacillus polymyxa} PDB: 2o9t_A* 2z1s_A* 2jie_A* 2o9r_A* | Back alignment and structure |
|---|
Probab=80.72 E-value=1.1 Score=44.01 Aligned_cols=60 Identities=10% Similarity=0.160 Sum_probs=46.3
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCC-----HHHHHHHHHHHHHcCCEEEEeee
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGS-----QADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt-----~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
...+.-..+-++-+|+||++++-++=- +..|- |.-|. .+=+++||++|+++||++|+++.
T Consensus 63 ~D~Y~~~~eDi~lm~~~G~~~~R~sis-------------WsRi~-P~~g~~n~~Gl~~y~~lid~l~~~GI~p~vtL~ 127 (454)
T 2o9p_A 63 CDHFHHFKEDVQLMKQLGFLHYRFSVA-------------WPRIM-PAAGIINEEGLLFYEHLLDEIELAGLIPMLTLY 127 (454)
T ss_dssp TCHHHHHHHHHHHHHTTTCCEEEEECC-------------HHHHC-SSTTCCCHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred cchHHHHHHHHHHHHhcCCceEEeccc-------------HHhhC-CCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 345777888899999999999998731 33344 33333 35689999999999999999986
|
| >2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A* | Back alignment and structure |
|---|
Probab=80.38 E-value=6.1 Score=39.41 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=50.9
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCC--------CCCCCCCHHHHHHHHHHHHHcCCEEEEee-e
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDL--------DASKYGSQADLKSLIQAFRQKGIKCLADM-V 112 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~i--------d~~~~Gt~edl~~Lv~~aH~~Gi~VilD~-v 112 (424)
...|.+.||.++..++|.+++---=. .++.|.+..|-.+ . ..+=|.+|++++|+-|.++||+||-.+ .
T Consensus 161 ~~~ik~~id~mA~~KlN~lh~HltDd--q~wr~ei~~~P~Lt~~Ga~~~~-~~~YT~~di~eiv~yA~~rgI~VIPEID~ 237 (507)
T 2gjx_A 161 LSSILDTLDVMAYNKLNVFHWHLVDD--PSFPYESFTFPELMRKGSYNPV-THIYTAQDVKEVIEYARLRGIRVLAEFDT 237 (507)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCS--SCCCBCCSSCTHHHHHHSSCTT-TSCBCHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCceEEEEEecc--cCeeeeccccchhhhccccCCC-CCCcCHHHHHHHHHHHHHcCCEEEECCCC
Confidence 78888999999999999999743110 1233333222111 1 122278999999999999999999887 4
Q ss_pred cccCC
Q 014447 113 INHRT 117 (424)
Q Consensus 113 ~NH~~ 117 (424)
+-|+.
T Consensus 238 PGH~~ 242 (507)
T 2gjx_A 238 PGHTL 242 (507)
T ss_dssp SSSCT
T ss_pred cchHH
Confidence 67775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 424 | ||||
| d1ht6a2 | 347 | c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hor | 2e-85 | |
| d1gcya2 | 357 | c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan m | 8e-63 | |
| d1mxga2 | 361 | c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeo | 3e-53 | |
| d2d3na2 | 394 | c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillu | 1e-46 | |
| d1e43a2 | 393 | c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera | 3e-43 | |
| d1jaea2 | 378 | c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mea | 1e-39 | |
| d1hvxa2 | 393 | c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillu | 1e-37 | |
| d1ud2a2 | 390 | c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillu | 2e-36 | |
| d1hx0a2 | 403 | c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus s | 1e-32 | |
| d1g94a2 | 354 | c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoa | 1e-31 | |
| d1j0ha3 | 382 | c.1.8.1 (A:124-505) Neopullulanase, central domain | 6e-23 | |
| d1ht6a1 | 57 | b.71.1.1 (A:348-404) Plant alpha-amylase {Barley ( | 6e-23 | |
| d1avaa1 | 57 | b.71.1.1 (A:347-403) Plant alpha-amylase {Barley ( | 1e-22 | |
| d1wzaa2 | 409 | c.1.8.1 (A:28-436) Bacterial alpha-amylase {Haloth | 2e-21 | |
| d1wzla3 | 382 | c.1.8.1 (A:121-502) Maltogenic amylase, central do | 4e-21 | |
| d1ua7a2 | 344 | c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillu | 2e-20 | |
| d1ea9c3 | 382 | c.1.8.1 (C:122-503) Maltogenic amylase, central do | 8e-20 | |
| d1ji1a3 | 432 | c.1.8.1 (A:123-554) Maltogenic amylase, central do | 3e-18 | |
| d2aaaa2 | 381 | c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergill | 3e-18 | |
| d1iv8a2 | 653 | c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase | 8e-18 | |
| d1m53a2 | 478 | c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Kle | 2e-17 | |
| d2guya2 | 381 | c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergill | 3e-17 | |
| d1lwha2 | 391 | c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Ther | 9e-17 | |
| d1g5aa2 | 554 | c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysacc | 1e-16 | |
| d1qhoa4 | 407 | c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase | 2e-16 | |
| d1uoka2 | 479 | c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus | 2e-16 | |
| d1h3ga3 | 422 | c.1.8.1 (A:96-517) Cyclomaltodextrinase, central d | 1e-15 | |
| d3bmva4 | 406 | c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase | 1e-14 | |
| d1eh9a3 | 400 | c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrol | 3e-14 | |
| d1m7xa3 | 396 | c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enz | 2e-13 | |
| d1bf2a3 | 475 | c.1.8.1 (A:163-637) Isoamylase, central domain {Ps | 2e-12 | |
| d2bhua3 | 420 | c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydro | 5e-12 | |
| d1gjwa2 | 572 | c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga | 2e-10 | |
| d1gjwa2 | 572 | c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga | 5e-04 | |
| d1r7aa2 | 434 | c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobac | 1e-04 | |
| d2fhfa5 | 563 | c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella p | 8e-04 |
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Score = 262 bits (670), Expect = 2e-85
Identities = 224/345 (64%), Positives = 268/345 (77%), Gaps = 3/345 (0%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+LFQGFNWES ++GGWYN + + D++ AG+THVWLPPPS SV+ +GYMPGRLYD+DA
Sbjct: 3 VLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDA 62
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
SKYG+ A+LKSLI A KG++ +AD+VINHR A+ KD RGIYCIFEGGTSD RLDWGP
Sbjct: 63 SKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPH 122
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
ICR D +YSDG N DTG DF APDIDHLN RVQ+EL +W+ WLK+++GFD WR DF
Sbjct: 123 MICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDFA 182
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGG---A 261
+GY+P + KVY++ TSP AV E WD+++ G DGKP+ +QD HR L +WV GG A
Sbjct: 183 RGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAASA 242
Query: 262 VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP 321
FDFTTKGIL AAV+GELWRL D GK PG +G P AVTF+DNHDTGSTQ +WPFP
Sbjct: 243 GMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFP 302
Query: 322 SDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNG 366
SDKVM GYAYILTHPG PCIFYDHFF+WG K+ I+ L A+R RNG
Sbjct: 303 SDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNG 347
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Score = 204 bits (520), Expect = 8e-63
Identities = 99/360 (27%), Positives = 152/360 (42%), Gaps = 37/360 (10%)
Query: 25 LLFQGFNWESSNKA-GGWYNSLKNSIPDLSNAGITHVWLPPP----------SQSVAPQG 73
++ QGF+W +A WYN L+ ++ G + +W+P P S+S +G
Sbjct: 18 IILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEG 77
Query: 74 YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGG 133
Y ++ + +YGS A L+ A G+K L D+V NH D +G
Sbjct: 78 YFW-HDFNKN-GRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGF 135
Query: 134 TSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193
+D D G + DD D++ +P+V D L+++
Sbjct: 136 WRNDCADPG-----------NYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQ 184
Query: 194 IGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 253
G G+RFDFV+GYAP +M +++ + + N + +KD
Sbjct: 185 YGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQIIKD 244
Query: 254 WVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGS 313
W A V FDF K +Q + + N P + AVTF+DNHDTG
Sbjct: 245 WSDRAKCPV--FDFALKERMQNGSIADWKHGLNGNPDPRW-----REVAVTFVDNHDTGY 297
Query: 314 T------QRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGI 367
+ Q W + YAYILT PGTP +++DH +DWG + I +L VR G+
Sbjct: 298 SPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAGV 357
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Score = 179 bits (455), Expect = 3e-53
Identities = 95/373 (25%), Positives = 149/373 (39%), Gaps = 40/373 (10%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ---GYMPGRLYD 81
++ Q F W+ G W++ +++ IP+ AGI+ +WLPPPS+ ++ GY P +D
Sbjct: 11 VIMQAFYWDVPGG-GIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFD 69
Query: 82 LD--------ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGG 133
L +++GS+ +L LIQ GIK +AD+VINHR + +
Sbjct: 70 LGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWT 129
Query: 134 TSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193
+ ++ T F + + ++
Sbjct: 130 DFSKVASGKYTANYLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRS 189
Query: 194 IGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 253
IGFDGWRFD+VKGY + + ++ N +AVGE W D + AL
Sbjct: 190 IGFDGWRFDYVKGYGAWVVRDWL-NWWGGWAVGEYW---------------DTNVDALLS 233
Query: 254 WVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGS 313
W +G V F K + +A + L + + P AVTF+ NHDT
Sbjct: 234 WAYESGAKVFDFPLYYK-MDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDI 292
Query: 314 TQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRV 373
+ YA+ILT+ G P IFY F +W K+ + L + +
Sbjct: 293 IWNKY--------PAYAFILTYEGQPVIFYRDFEEWLNKDKLINLIWIHDHLA---GGST 341
Query: 374 NILASDADVYIAA 386
I+ D D I
Sbjct: 342 TIVYYDNDELIFV 354
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Score = 163 bits (412), Expect = 1e-46
Identities = 90/400 (22%), Positives = 149/400 (37%), Gaps = 74/400 (18%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRLYDLD 83
+ Q F W N G +N L + +L + GIT VW+PP + + GY LYDL
Sbjct: 5 MMQYFEWYLPND-GNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLG 63
Query: 84 A--------SKYGSQADLKSLIQAFRQKGIKCLADMVINH----------------RTAE 119
+KYG+++ L++ + + + GI+ D+V+NH
Sbjct: 64 EFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNR 123
Query: 120 RKDGRGIYCIFEGGTSD------------------DRLDWGPSFICRGDKEYSDGQGNDD 161
++ G Y I D D +DW S G G
Sbjct: 124 NQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAW 183
Query: 162 TGED--------FQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITK 213
E + DID +P V EL +W W +G DG+R D VK S T+
Sbjct: 184 DWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKYSFTR 243
Query: 214 VYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKG-I 272
++ + + + D GA+++++Q + FD +
Sbjct: 244 DWINHVRSATGKNMFAVAEFWKND----------LGAIENYLQKTNWNHSVFDVPLHYNL 293
Query: 273 LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD-KVMLGYAY 331
A+ G + +++ + P +AVTF+DNHD+ + L F + L YA
Sbjct: 294 YNASKSGGNYDMRNIFNGTV--VQRHPSHAVTFVDNHDSQPEEALESFVEEWFKPLAYAL 351
Query: 332 ILTH-PGTPCIFYDHFF------DWGLKEAISKLAAVRNR 364
LT G P +FY ++ ++ I + R +
Sbjct: 352 TLTREQGYPSVFYGDYYGIPTHGVPAMRSKIDPILEARQK 391
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Score = 153 bits (388), Expect = 3e-43
Identities = 93/402 (23%), Positives = 151/402 (37%), Gaps = 76/402 (18%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLD 83
L Q F W + N G + L+N LS+ GIT VW+PP + + + GY P LYDL
Sbjct: 5 LMQYFEWYTPND-GQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLG 63
Query: 84 A--------SKYGSQADLKSLIQAFRQKGIKCLADMVINH-------------------- 115
+KYG++++L+ I + + ++ D+V+NH
Sbjct: 64 EFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANR 123
Query: 116 --------------------RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 155
R D + + F+G D+ F RG+ + D
Sbjct: 124 NQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGKAWD 183
Query: 156 GQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKV 214
+ + + G D+ D+D+ +P V E W W E+ DG+R D K S +
Sbjct: 184 WEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSFLRD 243
Query: 215 YMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQ 274
+++ + + + G L++++ + FD LQ
Sbjct: 244 WVQAVRQATGKEMFTVAEYWQNN----------AGKLENYLNKTSFNQSVFDVPLHFNLQ 293
Query: 275 AAV-QGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD-KVMLGYAYI 332
AA QG + ++ + P +VTF+DNHDT Q L L YA+I
Sbjct: 294 AASSQGGGYDMRKLLNG--TVVSKHPLKSVTFVDNHDTQPGQSLESTVQTWFKPLAYAFI 351
Query: 333 LTH-PGTPCIFYDHFF---------DWGLKEAISKLAAVRNR 364
LT G P +FY + LK I + R +
Sbjct: 352 LTRESGYPQVFYGDMYGTKGDSQREIPALKHKIEPILKARKQ 393
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Score = 144 bits (363), Expect = 1e-39
Identities = 62/331 (18%), Positives = 107/331 (32%), Gaps = 22/331 (6%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD-- 83
+ F W+ W + L G V + PP++ + G Y
Sbjct: 13 IVHLFEWK-------WNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSY 65
Query: 84 --ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDW 141
++ G ++ + + G++ D VINH T G G + + +
Sbjct: 66 IINTRSGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPY 125
Query: 142 GPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201
G + + ++ + D++ + V+ L D+MN + ++G G+R
Sbjct: 126 GSGDFHSPCEVNNYQDADNVRNCELVGLRDLNQGSDYVRGVLIDYMNHM-IDLGVAGFRV 184
Query: 202 DFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGA 261
D K +P V D + D A+ G
Sbjct: 185 DAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIYQE---VIDLGGEAISKNEYTGFGC 241
Query: 262 VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT---GSTQRLW 318
V F F +L L + P + + +AV F+DNHD G +Q L
Sbjct: 242 VLEFQFGVSLGNAFQGGNQLKNLANWG---PEWGLLEGLDAVVFVDNHDNQRTGGSQILT 298
Query: 319 PFPSDKVMLGYAYILTHP-GTPCIFYDHFFD 348
+ A++L HP GT I F
Sbjct: 299 YKNPKPYKMAIAFMLAHPYGTTRIMSSFDFT 329
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 138 bits (349), Expect = 1e-37
Identities = 98/403 (24%), Positives = 144/403 (35%), Gaps = 85/403 (21%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPP--PSQSVAPQGYMPGRLYDLD 83
+ Q F W + G + + N +LS+ GIT +WLPP S + GY LYDL
Sbjct: 8 MMQYFEWYLPDD-GTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLG 66
Query: 84 A--------SKYGSQADLKSLIQAFRQKGIKCLADMVINH-------------------- 115
+KYG++A IQA G++ AD+V +H
Sbjct: 67 EFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDR 126
Query: 116 --------------------RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 155
R + + F+G D+ + RG + D
Sbjct: 127 NQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGIGKAWD 186
Query: 156 GQ-GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKV 214
+ ++ D+ D+D +P V EL W W DG+R D VK S
Sbjct: 187 WEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIKFSFFPD 246
Query: 215 YME-----NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTT 269
++ P F VGE W L +++ G ++ FD
Sbjct: 247 WLSYVRSQTGKPLFTVGEYW---------------SYDINKLHNYIMKTNGTMSLFDAPL 291
Query: 270 KGILQAAVQ-GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT--GSTQRLWPFPSDKVM 326
A + G + ++ + P AVTF+DNHDT G + W P K
Sbjct: 292 HNKFYTASKSGGTFDMRTLMTN--TLMKDQPTLAVTFVDNHDTEPGQALQSWVDPWFK-P 348
Query: 327 LGYAYILT-HPGTPCIFYDHFF------DWGLKEAISKLAAVR 362
L YA+ILT G PC+FY ++ LK I L R
Sbjct: 349 LAYAFILTRQEGYPCVFYGDYYGIPQYNIPSLKSKIDPLLIAR 391
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} Length = 390 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Score = 135 bits (340), Expect = 2e-36
Identities = 90/394 (22%), Positives = 140/394 (35%), Gaps = 69/394 (17%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPP--PSQSVAPQGYMPGRLYDLD 83
+ Q + W G +N L + LS+AGIT +W+PP S A GY LYDL
Sbjct: 7 MMQYYEWHL-ENDGQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLG 65
Query: 84 A--------SKYGSQADLKSLIQAFRQKGIKCLADMVINH----------------RTAE 119
+KYG++A L+ I + + I D+V+NH T
Sbjct: 66 EFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNR 125
Query: 120 RKDGRGIYCI----------FEGGTSDDRLDW-------------GPSFICRGDKEYSDG 156
+D G Y I SD + W + ++
Sbjct: 126 WQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWR 185
Query: 157 QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM 216
++ D+ +ID +P VQ EL DW +W E+ DG+R D +K T ++
Sbjct: 186 VDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWYTSDWV 245
Query: 217 ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAA 276
+ + + D +A+
Sbjct: 246 RHQRNEADQDLFVVGEYWKDDVGALEFYLDEMNWEMSLFDV---------PLNYNFYRAS 296
Query: 277 VQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKV-MLGYAYILTH 335
QG + ++ N + P +AVTF+DNHDT + L + +D L YA ILT
Sbjct: 297 QQGGSYDMR--NILRGSLVEAHPMHAVTFVDNHDTQPGESLESWVADWFKPLAYATILTR 354
Query: 336 -PGTPCIFYDHFF------DWGLKEAISKLAAVR 362
G P +FY ++ K+ I +L R
Sbjct: 355 EGGYPNVFYGDYYGIPNDNISAKKDMIDELLDAR 388
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 125 bits (314), Expect = 1e-32
Identities = 58/349 (16%), Positives = 109/349 (31%), Gaps = 42/349 (12%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAP--------QGYMPG 77
+ F W W + L G V + PP++++ + Y P
Sbjct: 13 IVHLFEWR-------WVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQP- 64
Query: 78 RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE-----------RKDGRGI 126
Y L ++ G++ + + ++ G++ D VINH G
Sbjct: 65 VSYKLC-TRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGN 123
Query: 127 YCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDW 186
S + G G E + + D+ V+ ++D+
Sbjct: 124 REFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVG-LLDLALEKDYVRSMIADY 182
Query: 187 MNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDG 246
+N L +IG G+R D K P K ++ S + D +
Sbjct: 183 LNKL-IDIGVAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQEVIDLGGE- 240
Query: 247 HRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFI 306
A+K G V F + K + ++ G+ + A+ F+
Sbjct: 241 ---AIKSSEYFGNGRVTEFKYGAKLG-TVVRKWSGEKMSYLKNWGEGWGFMPSDRALVFV 296
Query: 307 DNHDT------GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIFYDHFFD 348
DNHD G + L + + + ++L HP G + + +
Sbjct: 297 DNHDNQRGHGAGGSSILTFWDARLYKIAVGFMLAHPYGFTRVMSSYRWA 345
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Score = 121 bits (304), Expect = 1e-31
Identities = 64/356 (17%), Positives = 109/356 (30%), Gaps = 41/356 (11%)
Query: 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAP----QGYMPG 77
+P F W W + + L G V + PP++ + Y P
Sbjct: 1 TPTTFVHLFEWN-------WQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQP- 52
Query: 78 RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDD 137
Y+L S+ G++A ++ G+ D +INH A F +
Sbjct: 53 VSYELQ-SRGGNRAQFIDMVNRCSAAGVDIYVDTLINH-MAAGSGTGTAGNSFGNKSFPI 110
Query: 138 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197
C + + D+D + VQ ++ ++N IG
Sbjct: 111 YSPQDFHESCTINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYIND-LQAIGVK 169
Query: 198 GWRFDFVKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQ 256
G+RFD K A S + M + E D A+
Sbjct: 170 GFRFDASKHVAASDIQSLMAKVNGSPVVFQEVI---------------DQGGEAVGASEY 214
Query: 257 AAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT----- 311
+ G V F ++T+ L + G+ + +AV F+DNHD
Sbjct: 215 LSTGLVTEFKYSTELGNTFRN----GSLAWLSNFGEGWGFMPSSSAVVFVDNHDNQRGHG 270
Query: 312 GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIFYDHFFDWGLKEAISKLAAVRNRNG 366
G+ + L ++L +P G P + + F + N N
Sbjct: 271 GAGNVITFEDGRLYDLANVFMLAYPYGYPKVMSSYDFHGDTDAGGPNVPVHNNGNL 326
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Score = 97.4 bits (241), Expect = 6e-23
Identities = 64/360 (17%), Positives = 114/360 (31%), Gaps = 40/360 (11%)
Query: 27 FQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASK 86
+ + ++ GG + + + L + GIT ++L P +S + Y +++D
Sbjct: 37 WGSEDPTPTSFFGGDLQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVD-PH 95
Query: 87 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFI 146
+G + LK+LI +KGI+ + D V NH E + ++ E D +
Sbjct: 96 FGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPL 155
Query: 147 CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206
+ D P ++ NP V++ L D + E DGWR D
Sbjct: 156 QTEPRPNYDTFAFVPQM------PKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANE 209
Query: 207 YAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFD 266
+F + + + PD Q F
Sbjct: 210 I------------DHEFWREFRQEVKALKPDVYILGEIWHDAMPWLRGDQFDAVMNYPFT 257
Query: 267 FTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVM 326
+ + + A + +HDT + KV
Sbjct: 258 DGVLRFFAKEEISARQFANQMMHVLHSYPNNVNEAAFNLLGSHDTSRILTVCGGDIRKVK 317
Query: 327 LGYAYILTHPGTPCIFY----------DHF----FDW-------GLKEAISKLAAVRNRN 365
L + + LT G+PCI+Y D W L + + +L A+R +
Sbjct: 318 LLFLFQLTFTGSPCIYYGDEIGMTGGNDPECRKCMVWDPMQQNKELHQHVKQLIALRKQY 377
|
| >d1ht6a1 b.71.1.1 (A:348-404) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} Length = 57 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Score = 89.0 bits (221), Expect = 6e-23
Identities = 26/57 (45%), Positives = 37/57 (64%)
Query: 367 INTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 423
I S + IL + D Y+A I +V++KIG + D+G +IP+ F +A G DYAVWEK
Sbjct: 1 ITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIPAGFVTSAHGNDYAVWEK 57
|
| >d1avaa1 b.71.1.1 (A:347-403) Plant alpha-amylase {Barley (Hordeum vulgare), seeds, AMY2 isozyme [TaxId: 4513]} Length = 57 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), seeds, AMY2 isozyme [TaxId: 4513]
Score = 88.3 bits (219), Expect = 1e-22
Identities = 32/56 (57%), Positives = 44/56 (78%)
Query: 368 NTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 423
+ S++ I+ +DAD+Y+A I +VI+K+GP+ D+GNLIP FKVAA G DYAVWEK
Sbjct: 1 HNESKLQIIEADADLYLAEIDGKVIVKLGPRYDVGNLIPGGFKVAAHGNDYAVWEK 56
|
| >d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} Length = 409 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Halothermothrix orenii [TaxId: 31909]
Score = 93.2 bits (230), Expect = 2e-21
Identities = 63/311 (20%), Positives = 102/311 (32%), Gaps = 31/311 (9%)
Query: 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108
+++ G+ +WL P +S + GY Y ++ YG+ D L++A Q+GIK +
Sbjct: 41 PETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKIN-PDYGTLEDFHKLVEAAHQRGIKVI 99
Query: 109 ADMVI-----NHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTG 163
D+ I H + + G + + G
Sbjct: 100 IDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYG 159
Query: 164 EDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT----------- 212
+ PD+++ NP VQ+++ + + G DG+R D P
Sbjct: 160 YFWSGMPDLNYNNPEVQEKVIGIAKYWLKQ-GVDGFRLDGAMHIFPPAQYDKNFTWWEKF 218
Query: 213 KVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGI 272
+ +E P + VGE WD L + V A A F F K
Sbjct: 219 RQEIEEVKPVYLVGEVWDISETVAPYFKYGFDSTFNFKLAEAVIATAKAGFPFGFNKK-- 276
Query: 273 LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYI 332
K G +G F+ NHD +K + +
Sbjct: 277 -----------AKHIYGVYDREVGFGNYIDAPFLTNHDQNRILDQLGQDRNKARVAASIY 325
Query: 333 LTHPGTPCIFY 343
LT PG P I+Y
Sbjct: 326 LTLPGNPFIYY 336
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Score = 92.0 bits (227), Expect = 4e-21
Identities = 63/348 (18%), Positives = 102/348 (29%), Gaps = 40/348 (11%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQ 98
GG + + +P L G+T ++ P S + Y +D ++G + L+
Sbjct: 49 GGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAID-PQFGDLPTFRRLVD 107
Query: 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158
++GIK + D V NH + R + E D +
Sbjct: 108 EAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFI-----EDFPVSKTSRTN 162
Query: 159 NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMEN 218
+ P + NP V++ L D + E G DGWR D +V
Sbjct: 163 YETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLDVAN-------EVDHAF 214
Query: 219 TSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ 278
+ + + + G D V + F G + A
Sbjct: 215 WREFRRLVKSLNPDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFFATGEIHAERF 274
Query: 279 GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGT 338
Q +D+HDT K L + +T+ GT
Sbjct: 275 DAELTRARMLYPEQA-----AQGLWNLLDSHDTERFLTSCGGNEAKFRLAVLFQMTYLGT 329
Query: 339 PCIFY----------DHF----FDW-------GLKEAISKLAAVRNRN 365
P I+Y D W GL E +L +R+R
Sbjct: 330 PLIYYGDEIGMAGATDPDCLRPMIWEEKEQNRGLFEFYKELIRLRHRL 377
|
| >d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus subtilis [TaxId: 1423]
Score = 89.6 bits (221), Expect = 2e-20
Identities = 60/337 (17%), Positives = 107/337 (31%), Gaps = 65/337 (19%)
Query: 28 QGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ-----------GYMP 76
+NW +N+LK+++ D+ +AG T + P +Q Y P
Sbjct: 10 HAWNWS--------FNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQP 61
Query: 77 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSD 136
+ G++ + K + A + GIK + D VINH F+
Sbjct: 62 TSYQIGN-RYLGTEQEFKEMCAAAEEYGIKVIVDAVINH------------TTFDYAAIS 108
Query: 137 DRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGF 196
+ + P++ + + D T D + N +VQ L ++ G
Sbjct: 109 NEVKSIPNWTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLERA-LNDGA 167
Query: 197 DGWRFDFVKGYAPSITK-------VYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRG 249
DG+RFD K + NTS +F GE
Sbjct: 168 DGFRFDAAKHIELPDDGSYGSQFWPNITNTSAEFQYGEILQD---------------SAS 212
Query: 250 ALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNH 309
+ + + + + L+ + + VT++++H
Sbjct: 213 RDAAYANYMDVTASNYGHSIRSALKNR-NLGVSNISHYASDVS------ADKLVTWVESH 265
Query: 310 DT--GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIFY 343
DT + D + LG+A I + TP F
Sbjct: 266 DTYANDDEESTWMSDDDIRLGWAVIASRSGSTPLFFS 302
|
| >d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Score = 88.2 bits (217), Expect = 8e-20
Identities = 66/365 (18%), Positives = 116/365 (31%), Gaps = 39/365 (10%)
Query: 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYD 81
L + + S GG + + + LS G+ V+ P ++ Y +
Sbjct: 30 EGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQ 89
Query: 82 LDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDW 141
+D ++G + LK L+ ++GI+ L D V NH + + + G DW
Sbjct: 90 ID-PQFGDKDTLKKLVDLCHERGIRVLLDAVFNHS---GRTFPPFVDVLKNGEKSKYKDW 145
Query: 142 GPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201
+ + E P ++ +P V++ L + E G DGWR
Sbjct: 146 FHIRSLPLEVVDGIPTYDTFAFEPLMP--KLNTEHPDVKEYLLKAAEYWIRETGIDGWRL 203
Query: 202 DFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGA 261
D V + V ++ + +Y + G D V
Sbjct: 204 DVANE-------VSHQFWREFRRVVKQANPDAYILGEVWHESSIWLEGDQFDAVMNYPFT 256
Query: 262 VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP 321
A DF I A + + + G+ + +D+HDT
Sbjct: 257 NAVLDFFIHQIADAEKFSFMLGKQLA-----GYPRQASEVMFNLLDSHDTARLLTQADGD 311
Query: 322 SDKVMLGYAYILTHPGTPCIFY----------DHF----FDW-------GLKEAISKLAA 360
K+ L + T+ GTPCI+Y D +W L +
Sbjct: 312 KRKMKLAVLFQFTYFGTPCIYYGDEVGLDGGHDPGCRKCMEWDETKHDKDLFAFYQTVIR 371
Query: 361 VRNRN 365
+R +
Sbjct: 372 LRQAH 376
|
| >d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} Length = 432 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]
Score = 84.0 bits (206), Expect = 3e-18
Identities = 57/377 (15%), Positives = 99/377 (26%), Gaps = 65/377 (17%)
Query: 39 GGWYNSLKNSIPDLSNA-GITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLI 97
GG + + + G ++L P ++ Y +D +G + L++LI
Sbjct: 65 GGDLAGIDQKLGYIKKTLGANILYLNPIFKAPTNHKYDTQDYMAVD-PAFGDNSTLQTLI 123
Query: 98 QAF----RQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEY 153
+ D V NH + +
Sbjct: 124 NDIHSTANGPKGYLILDGVFNHTGDSHPWFDKYN---NFSSQGAYESQSSPWYNYYTFYT 180
Query: 154 SDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-----WLKTEIGFDGWRFDFVKG-- 206
G + P + + V+ + + N +L DGWR D +
Sbjct: 181 WPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRLDAAQYVD 240
Query: 207 -------------YAPSITKVYMENTSPDFAVGEKWDS----LSYGPDGKPDANQDGHRG 249
S +GE W + + G N DG
Sbjct: 241 ANGNNGSDVTNHQIWSEFRNAVKGVNSNAAIIGEYWGNANPWTAQGNQWDAATNFDGFTQ 300
Query: 250 ALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNH 309
+ +W+ + +T G + + Q+ + F+ NH
Sbjct: 301 PVSEWITGKDYQNNSASISTTQFDSWL-----------RGTRANYPTNVQQSMMNFLSNH 349
Query: 310 DTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFY----------DHF----FDW------ 349
D K L + +T+ GTP I+Y D FDW
Sbjct: 350 DITRFATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQGGADPDNRRSFDWSQATPS 409
Query: 350 -GLKEAISKLAAVRNRN 365
KL +RN+
Sbjct: 410 NSAVALTQKLITIRNQY 426
|
| >d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus niger, acid amylase [TaxId: 5061]
Score = 83.6 bits (205), Expect = 3e-18
Identities = 58/323 (17%), Positives = 106/323 (32%), Gaps = 30/323 (9%)
Query: 29 GFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------APQGYMPGRLY 80
N + GG + + + + + G T +W+ P ++ + A GY ++Y
Sbjct: 29 TCNTGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIY 88
Query: 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLD 140
D++ S +G+ +LKSL A +G+ + D+V +H Y +F+ D
Sbjct: 89 DVN-SNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDP--FDSSSY 145
Query: 141 WGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWR 200
+ P + D + + G+ PD+D V+ DW+ L + DG R
Sbjct: 146 FHPYCLIT-DWDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLR 204
Query: 201 FDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGG 260
D V P Y + + G + D + D V
Sbjct: 205 IDSVLEVQPDFFPGYNKASGVYC----------VGEIDNGNPASDCPYQKVLDGVLNYPI 254
Query: 261 AVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPF 320
+ + + S+ P FI+NHD +
Sbjct: 255 YWQLLYAFESSSGSISNLYNMIKSVASDCSDP-------TLLGNFIENHDNPRFAKYTS- 306
Query: 321 PSDKVMLGYAYILTHPGTPCIFY 343
+ +YI G P ++
Sbjct: 307 DYSQAKNVLSYIFLSDGIPIVYA 329
|
| >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 653 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltooligosyl trehalose synthase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Score = 83.4 bits (206), Expect = 8e-18
Identities = 35/319 (10%), Positives = 82/319 (25%), Gaps = 74/319 (23%)
Query: 38 AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKS 95
+ + +++ + G++H++L P + + GY ++ + G + + +
Sbjct: 12 KNFNFGDVIDNLWYFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSRIN-DELGGEKEYRR 70
Query: 96 LIQAFRQKGIKCLADMVINH---------------------------------RTAERKD 122
LI+ G+ + D+V NH +
Sbjct: 71 LIETAHTIGLGIIQDIVPNHMAVNSLNWRLMDVLKMGKKSKYYTYFDFFPEDDKIRLPIL 130
Query: 123 GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA------------- 169
G + + G D F+ + + +D + Q
Sbjct: 131 GEDLDTVISKGLLKIVKDGDEYFLEYFKWKLPLTEVGNDIYDTLQKQNYTLMSWKNPPSY 190
Query: 170 ------PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA--PSITKVYMENTSP 221
+ +N + + + ++ DG+R D + G
Sbjct: 191 RRFFDVNTLIGVNVEKDHVFQESHSKIL-DLDVDGYRIDHIDGLYDPEKYINDLRSIIKN 249
Query: 222 DFAVGEKW----DSLSYGPDGK---------PDANQDGHRGALKDWVQAAGGAVA---AF 265
+ EK + L DG + ++ +
Sbjct: 250 KIIIVEKILGFQEELKLNSDGTTGYDFLNYSNLLFNFNQEIMDSIYENFTAEKISISESI 309
Query: 266 DFTTKGILQAAVQGELWRL 284
I+ E+ RL
Sbjct: 310 KKIKAQIIDELFSYEVKRL 328
|
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} Length = 478 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Score = 82.0 bits (201), Expect = 2e-17
Identities = 38/185 (20%), Positives = 75/185 (40%), Gaps = 13/185 (7%)
Query: 34 SSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQAD 92
+++ G + + L + GI +W+ P S GY + +YG+ D
Sbjct: 22 TNDDGIGDIRGIIEKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIM-KEYGTMED 80
Query: 93 LKSLIQAFRQKGIKCLADMVINHRTAE----------RKDGRGIYCIFEGGTSDDRLDWG 142
SL+ +++ ++ + D+VINH + + + + Y + G + +
Sbjct: 81 FDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNY 140
Query: 143 PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD 202
PSF + G + PD++ NP+V+++L + + + G G RFD
Sbjct: 141 PSFFGGSAWQKDAKSGQYYLHYFARQQPDLNWDNPKVREDLYAMLRFWL-DKGVSGMRFD 199
Query: 203 FVKGY 207
V Y
Sbjct: 200 TVATY 204
|
| >d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]
Score = 80.8 bits (198), Expect = 3e-17
Identities = 66/315 (20%), Positives = 112/315 (35%), Gaps = 34/315 (10%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------APQGYMPGRLYDLDASKYGSQ 90
GG + + + + + G T +W+ P + + A GY +Y L+ YG+
Sbjct: 39 GGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLN-ENYGTA 97
Query: 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD 150
DLK+L A ++G+ + D+V NH + Y +F+ +S D + F +
Sbjct: 98 DDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQD---YFHPFCFIQN 154
Query: 151 KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS 210
E + G++ PD+D V+ E DW+ L + DG R D VK
Sbjct: 155 YEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKD 214
Query: 211 ITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTK 270
Y + + +GE D G Q+ G L + +
Sbjct: 215 FWPGYNKAAGV-YCIGEVLD----GDPAYTCPYQNVMDGVLNYPIYYPLLNAFKSTSGSM 269
Query: 271 GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDK--VMLG 328
L + D TF++NHD R + +D
Sbjct: 270 DDLYNMINTVKSDCPD------------STLLGTFVENHD---NPRFASYTNDIALAKNV 314
Query: 329 YAYILTHPGTPCIFY 343
A+I+ + G P I+
Sbjct: 315 AAFIILNDGIPIIYA 329
|
| >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 4-alpha-glucanotransferase species: Thermotoga maritima [TaxId: 2336]
Score = 79.3 bits (194), Expect = 9e-17
Identities = 73/319 (22%), Positives = 119/319 (37%), Gaps = 29/319 (9%)
Query: 34 SSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADL 93
+ G + LKN++ L GI VWL P S++ GY Y ++YGS+ +
Sbjct: 14 GNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFK-AEYGSEREF 72
Query: 94 KSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEY 153
K +I+AF GIK + D+ I+H + + D W ++
Sbjct: 73 KEMIEAFHDSGIKVVLDLPIHHTGFLHTWFQ--KALKGDPHYRDYYVWANKETDLDERRE 130
Query: 154 SDGQGNDDTGEDFQP--------APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 205
DG+ ED + +PD+++ NP+V E+ + L +G DG+RFD K
Sbjct: 131 WDGEKIWHPLEDGRFYRGLFGPFSPDLNYDNPQVFDEMKRLVLHLLD-MGVDGFRFDAAK 189
Query: 206 GYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAF 265
+I + W G A + + + G
Sbjct: 190 HMRDTIEQNVR-----------FWKYFLSDLKGIFLAEIWAEARMVDEHGRIFG---YML 235
Query: 266 DFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP-FPSDK 324
+F T ++ AV E R+ + + V F NHD F +K
Sbjct: 236 NFDTSHCIKEAVWKENTRVLIESIERAVIAK--DYLPVNFTSNHDMSRLASFEGGFSKEK 293
Query: 325 VMLGYAYILTHPGTPCIFY 343
+ L + + T PG P +FY
Sbjct: 294 IKLSISILFTLPGVPLVFY 312
|
| >d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} Length = 554 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylosucrase species: Neisseria polysaccharea [TaxId: 489]
Score = 79.2 bits (194), Expect = 1e-16
Identities = 60/379 (15%), Positives = 105/379 (27%), Gaps = 75/379 (19%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ---GYMPGRLYDLDASKYGSQADLKS 95
G LK+ IP G+T++ L P + + GY D++ G+ DL+
Sbjct: 109 AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVN-PALGTIGDLRE 167
Query: 96 LIQAFRQKGIKCLADMVINHRTAE----------RKDGRGIYCIFEGGTSDDRL--DWGP 143
+I A + GI + D + NH + E Y IF D+
Sbjct: 168 VIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLRE 227
Query: 144 SFICRGDKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNW------------- 189
F + +S + F D+++ NP V + ++ M +
Sbjct: 228 IFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSNPWVFRAMAGEMLFLANLGVDILRMDA 287
Query: 190 ---LKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKW----DSLSYGPDGKPDA 242
+ ++G + V F E + Y +
Sbjct: 288 VAFIWKQMGTSCENLPQAHALIRAFNAVMRIAAPAVFFKSEAIVHPDQVVQYIGQDECQI 347
Query: 243 NQD-------------GHRGALKDWVQAA-------------------GGAVAAFDFTTK 270
+ L + G A D
Sbjct: 348 GYNPLQMALLWNTLATREVNLLHQALTYRHNLPEHTAWVNYVRSHDDIGWTFADEDAAYL 407
Query: 271 GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD------K 324
GI + L R + G+ Q + D +G+ L D +
Sbjct: 408 GISGYDHRQFLNRFFVNRFDGSFARGVPFQYNPSTGDCRVSGTAAALVGLAQDDPHAVDR 467
Query: 325 VMLGYAYILTHPGTPCIFY 343
+ L Y+ L+ G P I+
Sbjct: 468 IKLLYSIALSTGGLPLIYL 486
|
| >d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} Length = 407 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Score = 78.6 bits (192), Expect = 2e-16
Identities = 65/361 (18%), Positives = 109/361 (30%), Gaps = 40/361 (11%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV---------APQGYMPGRLYDLDASKYGS 89
GG ++ +P L G+T +WL P ++ GY R + +G+
Sbjct: 48 GGDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWT-RDFKQIEEHFGN 106
Query: 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRG 149
+L+ Q GIK + D V NH T EGG + + ++
Sbjct: 107 WTTFDTLVNDAHQNGIKVIVDFVPNHST---PFKANDSTFAEGGALYNNGTYMGNYFDDA 163
Query: 150 DKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 209
K Y G D + D + + L+D T + + +
Sbjct: 164 TKGYFHHNG-DISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVAHGA 222
Query: 210 SITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTT 269
++ D L D G + ++ A +
Sbjct: 223 DGLRIDAVKHFNSGFSKSLADKLYQKKDIFLVGEWYGDDPGTANHLEKVRYANNSGVNVL 282
Query: 270 KGILQAAVQGELWRLKDSNGKPPGFIGIL------PQNAVTFIDNHDTGSTQRLWPFPSD 323
L ++ + + +N +TFIDNHD +
Sbjct: 283 DFDLNTVIRNVFGTFTQTMYDLNNMVNQTGNEYKYKENLITFIDNHDMSRFLSVNSNK-A 341
Query: 324 KVMLGYAYILTHPGTPCIFY----------DHF-------FDWG--LKEAISKLAAVRNR 364
+ A+ILT GTP I+Y D + FD + +S LA +R
Sbjct: 342 NLHQALAFILTSRGTPSIYYGTEQYMAGGNDPYNRGMMPAFDTTTTAFKEVSTLAGLRRN 401
Query: 365 N 365
N
Sbjct: 402 N 402
|
| >d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} Length = 479 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Oligo-1,6, glucosidase species: Bacillus cereus [TaxId: 1396]
Score = 78.5 bits (192), Expect = 2e-16
Identities = 57/348 (16%), Positives = 113/348 (32%), Gaps = 41/348 (11%)
Query: 34 SSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQAD 92
S+ G + + + L GI +WL P +S GY + +++G+ D
Sbjct: 22 SNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIM-NEFGTMED 80
Query: 93 LKSLIQAFRQKGIKCLADMVINHRTAERK-----------DGRGIYCIFEGGTSDDRLDW 141
L+ ++ +K + D+V+NH + E R Y G + +W
Sbjct: 81 WDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNW 140
Query: 142 GPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201
G +F +Y + + PD++ N +V++++ + M + E G DG+R
Sbjct: 141 GAAF-SGSAWQYDEMTDEYYLHLFSKKQPDLNWDNEKVRQDVYEMMKFW-LEKGIDGFRM 198
Query: 202 DFV---------------KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDG 246
D + + S K +M + + E + + D G
Sbjct: 199 DVINFISKEEGLPTVETEEEGYVSGHKHFMNGPNIHKYLHEMNEEVLSHYDIMTVGEMPG 258
Query: 247 HRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAV--- 303
F + + + +G W +K + Q A+
Sbjct: 259 VTTEEAKLYTGEERKELQMVFQFEHMDLDSGEGGKWDVKPCSLLTLKENLTKWQKALEHT 318
Query: 304 ----TFIDNHDTGSTQ----RLWPFPSDKVMLGYAYILTHPGTPCIFY 343
+ +NHD + + + + GTP I+
Sbjct: 319 GWNSLYWNNHDQPRVVSRFGNDGMYRIESAKMLATVLHMMKGTPYIYQ 366
|
| >d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]} Length = 422 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclomaltodextrinase, central domain species: Flavobacterium sp. 92 [TaxId: 197856]
Score = 75.6 bits (184), Expect = 1e-15
Identities = 61/319 (19%), Positives = 103/319 (32%), Gaps = 25/319 (7%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ----GYMPGRLYDLDASKYGSQADLK 94
GG + + ++ G T +W P ++ A GY Y +D +YGS D
Sbjct: 49 GGDIRGTIDHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRID-PRYGSNEDFV 107
Query: 95 SLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154
L R++G+ + D+V++H + + + + D +
Sbjct: 108 RLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRVAVQDPYAA 167
Query: 155 DGQGNDDT-GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG----YAP 209
+ T G + PD++ NP V L W G G R D +
Sbjct: 168 QADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLT 227
Query: 210 SITKVYMENTSPDFAVGEKW--DSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF 267
T+ M VGE+W + AN DG+ L DF
Sbjct: 228 EYTRRLMAEYPRLNMVGEEWSTRVPVVARWQRGKANFDGYTSHLPSL----------MDF 277
Query: 268 TTKGILQAAVQGELWRLKDS---NGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDK 324
++ A+ + ++ PQN V F NHD D+
Sbjct: 278 PLVDAMRNALSKTGEENGLNEVYETLSLDYLYPEPQNLVLFGGNHDMARMFSAAGEDFDR 337
Query: 325 VMLGYAYILTHPGTPCIFY 343
+ +++T P P +
Sbjct: 338 WRMNLVFLMTMPRIPQFYS 356
|
| >d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Score = 73.2 bits (178), Expect = 1e-14
Identities = 74/366 (20%), Positives = 118/366 (32%), Gaps = 54/366 (14%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQ-------------SVAPQGYMPGRLYDLD 83
GG + + N I D L+ G+T +W+P P + S + GY +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTN 110
Query: 84 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGP 143
+GS D ++LI IK + D NH T+ + Y + L G
Sbjct: 111 -PYFGSFTDFQNLINTAHAHNIKVIIDFAPNH-TSPASETDPTYAENGRLYDNGTLLGGY 168
Query: 144 SFICRGDKEYSDGQGN----DDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGW 199
+ G + G D + D++ N + L + ++G DG
Sbjct: 169 TNDTNGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKV-WLDMGIDGI 227
Query: 200 RFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAG 259
R D VK K +M++ G+ + + +G
Sbjct: 228 RLDAVKHMPFGWQKNFMDS---------ILSYRPVFTFGEWFLGTNEIDVNNTYFANESG 278
Query: 260 GAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP 319
++ F F+ K + DS + + VTFIDNHD R +
Sbjct: 279 MSLLDFRFSQKVRQVFRDNTDTMYGLDSMIQSTASDYNFINDMVTFIDNHDM---DRFYN 335
Query: 320 -FPSDKVMLGYAYILTHPGTPCIFY----------DHF----FDWG-----LKEAISKLA 359
+ V A+ LT G P I+Y D + I KLA
Sbjct: 336 GGSTRPVEQALAFTLTSRGVPAIYYGTEQYMTGNGDPYNRAMMTSFNTSTTAYNVIKKLA 395
Query: 360 AVRNRN 365
+R N
Sbjct: 396 PLRKSN 401
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Score = 72.0 bits (175), Expect = 3e-14
Identities = 62/368 (16%), Positives = 103/368 (27%), Gaps = 62/368 (16%)
Query: 37 KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRLYDLDASKYGSQADLK 94
G + + + L + GIT + + P +Q + GY LY + + YG +
Sbjct: 23 TPEGTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQ-NSYGGPEGFR 81
Query: 95 SLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154
L+ +KG+ + D+V NH E + + GP F + +
Sbjct: 82 KLVDEAHKKGLGVILDVVYNHVGPE---------------GNYMVKLGPYFSQKYKTPWG 126
Query: 155 DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKV 214
D D + V+K + + + + E DG+R D V + K
Sbjct: 127 LTFNFD------------DAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAIIDTSPKH 174
Query: 215 YMENTSPDF-----------------AVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA 257
+E + V K D L Q
Sbjct: 175 ILEEIADVVHKYNRIVIAESDLNDPRVVNPKEKCGYNIDAQWVDDFHHSIHAYLTGERQG 234
Query: 258 AGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT----GS 313
D K V + + N V +I NHD G
Sbjct: 235 YYTDFGNLDDIVKSYKDVFVYDGKYSNFRRKTHGEPVGELDGCNFVVYIQNHDQVGNRGK 294
Query: 314 TQRLWPFPSDKV-MLGYAYILTHPGTPCIFY----------DHFFDWGLKEAISKLAAVR 362
+R+ + + A L P P IF F D+ + I + R
Sbjct: 295 GERIIKLVDRESYKIAAALYLLSPYIPMIFMGEEYGEENPFYFFSDFSDSKLIQGVREGR 354
Query: 363 NRNGINTA 370
+
Sbjct: 355 KKENGQDT 362
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Score = 68.9 bits (167), Expect = 2e-13
Identities = 45/340 (13%), Positives = 87/340 (25%), Gaps = 48/340 (14%)
Query: 29 GFNWESSNKAGGWYNSL-KNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRLYDLDAS 85
+ + N Y L +P G TH+ L P ++ GY P LY
Sbjct: 26 SWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPT-R 84
Query: 86 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 145
++G++ D + I A G+ + D V H + SD R + +
Sbjct: 85 RFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDW 144
Query: 146 ICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 205
++ V L + G D R D V
Sbjct: 145 NT----------------------LIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVA 182
Query: 206 GYAPS----ITKVYMENTSPDFAVGEKWDSLS---------YGPDGKPDANQDGHRGALK 252
++ N E + L G +
Sbjct: 183 SMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSR 242
Query: 253 DWVQAAGGAVAAFDFTTKGILQAAVQGE-LWRLKDSNGKPPGFIGILPQNAVTFIDNHDT 311
G ++ ++ + ++R + G + +N V + + +
Sbjct: 243 PQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTENFVLPLSHDEV 302
Query: 312 GSTQRLWPFPSD--------KVMLGYAYILTHPGTPCIFY 343
++ + Y ++ PG +F
Sbjct: 303 VHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFM 342
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} Length = 475 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Score = 66.2 bits (160), Expect = 2e-12
Identities = 60/374 (16%), Positives = 107/374 (28%), Gaps = 61/374 (16%)
Query: 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------------APQGYMPGRLYDLD-- 83
G Y L++ G+T V P ++ GYM + D
Sbjct: 40 GTYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRR 99
Query: 84 ----ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRL 139
+ G A+ ++++QAF GIK D+V NH +
Sbjct: 100 YAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLD 159
Query: 140 DWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGW 199
+ + G++ + D G + + N Q + D + + +G DG+
Sbjct: 160 NATYYELTSGNQYFYDNTGIG---------ANFNTYNTVAQNLIVDSLAYWANTMGVDGF 210
Query: 200 RFDFVKG----------------------------YAPSITKVYMENTSPDFAVGEKWDS 231
RFD +I ++ E T A G D
Sbjct: 211 RFDLASVLGNSCLNGAYTASAPNCPNGGYNFDAADSNVAINRILREFTVRPAAGGSGLDL 270
Query: 232 LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKP 291
+ ++ Q G G + V + S+
Sbjct: 271 FAEPWAIGGNSYQLGGFPQGWSEWNGLFRDSLRQAQNELGSMTIYVTQDANDFSGSSNLF 330
Query: 292 PGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGL 351
G P N++ FID HD + + ++ + Y + GT ++ +D G+
Sbjct: 331 QSS-GRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDGGTST---NYSWDQGM 386
Query: 352 KEAISKLAAVRNRN 365
R
Sbjct: 387 SAGTGAAVDQRRAA 400
|
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Deinococcus radiodurans [TaxId: 1299]
Score = 64.8 bits (156), Expect = 5e-12
Identities = 55/333 (16%), Positives = 93/333 (27%), Gaps = 56/333 (16%)
Query: 37 KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRLYDLDASKYGSQADLK 94
G Y + +P L G+T + + P + + GY Y A YG DL
Sbjct: 28 TPEGTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAP-YGRPEDLM 86
Query: 95 SLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154
+L+ A + G+ D+V NH +GPS S
Sbjct: 87 ALVDAAHRLGLGVFLDVVYNH-------------------------FGPSGNYLSSYAPS 121
Query: 155 DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV--------KG 206
+D+ P +++ ++ + FDG R D
Sbjct: 122 YFTDRF----SSAWGMGLDYAEPHMRRYVTGNARMWLRDYHFDGLRLDATPYMTDDSETH 177
Query: 207 YAPSITKVYMENTSPDFAVGEKWDSLS--YGPDGKPDANQDGHRGALKD-WVQAAGGAVA 263
+ + E + E +L + D + G A
Sbjct: 178 ILTELAQEIHELGGTHLLLAEDHRNLPDLVTVNHLDGIWTDDFHHETRVTLTGEQEGYYA 237
Query: 264 AFDFTTKGILQAAVQGELWRLKDSNGKPPGFI------GILPQNAVTFIDNHDTGSTQRL 317
+ + + +G + + K + N V I NHD + L
Sbjct: 238 GYRGGAEALAYTIRRGWRYEGQFWAVKGEEHERGHPSDALEAPNFVYCIQNHDQIGNRPL 297
Query: 318 WPFPSD-------KVMLGYAYILTHPGTPCIFY 343
+ A +LT P TP +F
Sbjct: 298 GERLHQSDGVTLHEYRGAAALLLTLPMTPLLFQ 330
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 572 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Score = 60.4 bits (145), Expect = 2e-10
Identities = 24/190 (12%), Positives = 59/190 (31%), Gaps = 22/190 (11%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-------APQGYMPGRLYDLD-------A 84
G + + +P + + G ++L P S+ AP Y +LD
Sbjct: 116 AGTFFKMMLLLPFVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLL 175
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
+ + K+ ++A GI+ + D + + R F ++ D+ P
Sbjct: 176 EPFKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPP 235
Query: 145 FICRGDKEYSDGQGNDDTGED-------FQPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197
+ D + + + ++P+ +++ + E+
Sbjct: 236 RAEELPFKVPDEDELEIIYNKENVKRHLKKFTLPPNLIDPQKWEKIKREEGNI-LELIVK 294
Query: 198 GWRFDFVKGY 207
+ G+
Sbjct: 295 EFGIITPPGF 304
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 572 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Score = 40.0 bits (92), Expect = 5e-04
Identities = 28/313 (8%), Positives = 63/313 (20%), Gaps = 30/313 (9%)
Query: 31 NWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQ 90
+W K + +L L + ++ +
Sbjct: 219 DWFYWIKVEELADYTPPRAEELPFKVPDEDELEIIYNKENVKRHLKKFTLPPNLIDPQKW 278
Query: 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD 150
+K + +K + ++ T P R
Sbjct: 279 EKIKREEGNILELIVKEFGIITPPGF---SDLINDPQPTWDDVTFLRLYLDHPEASKRFL 335
Query: 151 KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS 210
D + N + + L+ + + + G DG R D
Sbjct: 336 DPNQPPYVLYDVIKAS--KFPGKEPNRELWEYLAGVIPHYQKKYGIDGARLDMGHALPKE 393
Query: 211 ITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTK 270
+ + ++N + P D + A +D
Sbjct: 394 LLDLIIKNVK----------------EYDPAFVMIAEE---LDMEKDKASKEAGYDVILG 434
Query: 271 GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYA 330
A + E + + ++ DT K + +
Sbjct: 435 SSWYFAGRVEEIGKLPDIAEELVL------PFLASVETPDTPRIATRKYASKMKKLAPFV 488
Query: 331 YILTHPGTPCIFY 343
P +
Sbjct: 489 TYFLPNSIPYVNT 501
|
| >d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Sucrose phosphorylase species: Bifidobacterium adolescentis [TaxId: 1680]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 41/374 (10%), Positives = 81/374 (21%), Gaps = 77/374 (20%)
Query: 38 AGGWYNSLKNSIPDLSNAGITHVWLPP--PSQSVAPQGYMPGRLYDLDASKYGSQADLKS 95
G S+ + + + V + P A G+ P +D + GS D+
Sbjct: 15 GDGTIKSMTDILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVD-ERLGSWDDVAE 73
Query: 96 LIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDW-------------- 141
L K + D ++NH + E K + + E
Sbjct: 74 LS-----KTHNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDL 128
Query: 142 ----GPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197
P G+ DID + + + L +
Sbjct: 129 AGIYRPRPGLPFTHYKFAGKTRLVWVSFTPQQVDIDTDSDKGWEYLMSIFDQ-MAASHVS 187
Query: 198 GWRFD--------------------------------------------FVKGYAPSITK 213
R D + K +
Sbjct: 188 YIRLDAVGYGAKEAGTSCFMTPKTFKLISRLREEGVKRGLEILIEVHSYYKKQVEIASKV 247
Query: 214 VYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGIL 273
+ + + + + P + + + D G D + +
Sbjct: 248 DRVYDFALPPLLLHALSTGHVEPVAHWTDIRPNNAVTVLDTHDGIGVIDIGSDQLDRSLK 307
Query: 274 QAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP----FPSDKVMLGY 329
++ L ++ G N D + +
Sbjct: 308 GLVPDEDVDNLVNTIHA--NTHGESQAATGAAASNLDLYQVNSTYYSALGCNDQHYIAAR 365
Query: 330 AYILTHPGTPCIFY 343
A PG P ++Y
Sbjct: 366 AVQFFLPGVPQVYY 379
|
| >d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} Length = 563 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Score = 39.4 bits (90), Expect = 8e-04
Identities = 23/165 (13%), Positives = 52/165 (31%), Gaps = 6/165 (3%)
Query: 49 IPDLSNAGITHVWLPP--PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIK 106
+ LS +G+TH+ L P +V + + + +KS A
Sbjct: 61 LKQLSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGS 120
Query: 107 CLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWG--PSFICRGDKEYSDGQGNDDTGE 164
+ +++ + + KD + + D +WG P + Y+ +
Sbjct: 121 TVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIK 180
Query: 165 DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 209
+F+ I + + + + + T R + P
Sbjct: 181 EFRTM--IQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVP 223
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 424 | |||
| d1ht6a2 | 347 | Plant alpha-amylase {Barley (Hordeum vulgare), AMY | 100.0 | |
| d1ea9c3 | 382 | Maltogenic amylase, central domain {Bacillus sp., | 100.0 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 100.0 | |
| d1j0ha3 | 382 | Neopullulanase, central domain {Bacillus stearothe | 100.0 | |
| d1mxga2 | 361 | Bacterial alpha-amylase {Archaeon Pyrococcus woese | 100.0 | |
| d1h3ga3 | 422 | Cyclomaltodextrinase, central domain {Flavobacteri | 100.0 | |
| d2aaaa2 | 381 | Fungal alpha-amylases {Aspergillus niger, acid amy | 100.0 | |
| d1qhoa4 | 407 | Cyclodextrin glycosyltransferase {Bacillus stearot | 100.0 | |
| d1wzla3 | 382 | Maltogenic amylase, central domain {Thermoactinomy | 100.0 | |
| d1e43a2 | 393 | Bacterial alpha-amylase {Chimera (Bacillus amyloli | 100.0 | |
| d2d3na2 | 394 | Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: | 100.0 | |
| d3bmva4 | 406 | Cyclodextrin glycosyltransferase {Thermoanaerobact | 100.0 | |
| d2guya2 | 381 | Fungal alpha-amylases {Aspergillus oryzae, Taka-am | 100.0 | |
| d1lwha2 | 391 | 4-alpha-glucanotransferase {Thermotoga maritima [T | 100.0 | |
| d1wzaa2 | 409 | Bacterial alpha-amylase {Halothermothrix orenii [T | 100.0 | |
| d1hvxa2 | 393 | Bacterial alpha-amylase {Bacillus stearothermophil | 100.0 | |
| d1m53a2 | 478 | Isomaltulose synthase PalI {Klebsiella sp., lx3 [T | 100.0 | |
| d1ji1a3 | 432 | Maltogenic amylase, central domain {Thermoactinomy | 100.0 | |
| d1uoka2 | 479 | Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 13 | 100.0 | |
| d1ua7a2 | 344 | Bacterial alpha-amylase {Bacillus subtilis [TaxId: | 100.0 | |
| d2bhua3 | 420 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d1g5aa2 | 554 | Amylosucrase {Neisseria polysaccharea [TaxId: 489] | 100.0 | |
| d1g94a2 | 354 | Bacterial alpha-amylase {Pseudoalteromonas halopla | 100.0 | |
| d1jaea2 | 378 | Animal alpha-amylase {Yellow mealworm (Tenebrio mo | 100.0 | |
| d1eh9a3 | 400 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d1bf2a3 | 475 | Isoamylase, central domain {Pseudomonas amyloderam | 100.0 | |
| d1ud2a2 | 390 | Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta | 100.0 | |
| d1m7xa3 | 396 | 1,4-alpha-glucan branching enzyme, central domain | 100.0 | |
| d1hx0a2 | 403 | Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982 | 100.0 | |
| d2fhfa5 | 563 | Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 | 100.0 | |
| d1r7aa2 | 434 | Sucrose phosphorylase {Bifidobacterium adolescenti | 100.0 | |
| d1gjwa2 | 572 | Maltosyltransferase {Thermotoga maritima [TaxId: 2 | 100.0 | |
| d1iv8a2 | 653 | Maltooligosyl trehalose synthase {Archaeon Sulfolo | 99.97 | |
| d1x1na1 | 523 | Amylomaltase MalQ {Potato (Solanum tuberosum) [Tax | 98.45 | |
| d1avaa1 | 57 | Plant alpha-amylase {Barley (Hordeum vulgare), see | 98.31 | |
| d1ht6a1 | 57 | Plant alpha-amylase {Barley (Hordeum vulgare), AMY | 98.29 | |
| d1tz7a1 | 485 | Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363] | 98.29 | |
| d1eswa_ | 500 | Amylomaltase MalQ {Thermus aquaticus [TaxId: 271]} | 98.09 | |
| d1zy9a2 | 348 | Alpha-galactosidase GalA catalytic domain {Thermot | 97.73 | |
| d2f2ha4 | 338 | Putative glucosidase YicI, domain 2 {Escherichia c | 97.52 | |
| d1x7fa2 | 244 | Outer surface protein, N-terminal domain {Bacillus | 96.84 | |
| d1rh9a1 | 370 | Beta-mannanase {Tomato (Lycopersicon esculentum) [ | 96.79 | |
| d1ecea_ | 358 | Endocellulase E1 {Acidothermus cellulolyticus [Tax | 96.39 | |
| d1ur4a_ | 387 | Beta-1,4-galactanase {Bacillus licheniformis [TaxI | 96.36 | |
| d1qnra_ | 344 | Beta-mannanase {Trichoderma reesei [TaxId: 51453]} | 96.14 | |
| d2pb1a1 | 394 | Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) | 96.09 | |
| d1ceoa_ | 340 | Endoglucanase CelC {Clostridium thermocellum [TaxI | 96.04 | |
| d1uuqa_ | 410 | Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | 96.03 | |
| d2c0ha1 | 350 | endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed | 95.49 | |
| d1foba_ | 334 | Beta-1,4-galactanase {Fungus (Aspergillus aculeatu | 95.48 | |
| d1h4pa_ | 408 | Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom | 95.45 | |
| d1j0ha2 | 83 | Neopullulanase {Bacillus stearothermophilus [TaxId | 95.33 | |
| d1hjsa_ | 332 | Beta-1,4-galactanase {Thielavia heterothallica, ak | 95.32 | |
| d1wzla2 | 83 | Maltogenic amylase {Thermoactinomyces vulgaris, TV | 94.89 | |
| d1wkya2 | 297 | Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449 | 94.8 | |
| d1jaea1 | 93 | Animal alpha-amylase {Yellow mealworm (Tenebrio mo | 94.77 | |
| d1kwga2 | 393 | A4 beta-galactosidase {Thermus thermophilus [TaxId | 94.69 | |
| d1edga_ | 380 | Endoglucanase CelA {Clostridium cellulolyticum [Ta | 94.57 | |
| d1cxla3 | 90 | Cyclodextrin glycosyltransferase {Bacillus circula | 94.57 | |
| d1hx0a1 | 93 | Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982 | 94.44 | |
| d1vjza_ | 325 | Endoglucanase homologue TM1752 {Thermotoga maritim | 94.17 | |
| d1h1na_ | 305 | Endocellulase EngI {Thermoascus aurantiacus [TaxId | 93.88 | |
| d3bmva3 | 89 | Cyclodextrin glycosyltransferase {Thermoanaerobact | 93.86 | |
| d1edta_ | 265 | Endo-beta-N-acetylglucosaminidase {Streptomyces pl | 93.59 | |
| d1bqca_ | 302 | Beta-mannanase {Thermomonospora fusca [TaxId: 2021 | 93.59 | |
| d1g94a1 | 94 | Bacterial alpha-Amylase {Pseudoalteromonas halopla | 93.51 | |
| d1g01a_ | 357 | Alkaline cellulase K catalytic domain {Bacillus sp | 93.41 | |
| d1cyga3 | 89 | Cyclodextrin glycosyltransferase {Bacillus stearot | 93.0 | |
| d7a3ha_ | 300 | Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId | 92.43 | |
| d1ji1a2 | 83 | Maltogenic amylase {Thermoactinomyces vulgaris, TV | 92.21 | |
| d2ebna_ | 285 | Endo-beta-N-acetylglucosaminidase {Flavobacterium | 91.75 | |
| d1tvna1 | 293 | Endoglucanase Cel5a {Pseudoalteromonas haloplankti | 91.73 | |
| d1egza_ | 291 | Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: | 91.7 | |
| d1r46a2 | 292 | Melibiase {Human (Homo sapiens) [TaxId: 9606]} | 91.68 | |
| d1ea9c2 | 80 | Maltogenic amylase {Bacillus sp., cyclomaltodextri | 91.51 | |
| d1tg7a5 | 354 | Beta-galactosidase LacA, N-terminal domain {Penici | 91.37 | |
| d1m53a1 | 78 | Isomaltulose synthase PalI {Klebsiella sp., lx3 [T | 90.74 | |
| d1hl9a2 | 350 | Putative alpha-L-fucosidase, catalytic domain {The | 90.35 | |
| d1nowa1 | 353 | beta-hexosaminidase B {Human (Homo sapiens) [TaxId | 89.58 | |
| d1uoka1 | 79 | Oligo-1,6-glucosidase {Bacillus cereus [TaxId: 139 | 89.5 | |
| d2fhfa5 | 563 | Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 | 89.31 | |
| d1uasa2 | 273 | Melibiase {Rice (Oryza sativa) [TaxId: 4530]} | 89.04 | |
| d1eoka_ | 282 | Endo-beta-N-acetylglucosaminidase {Flavobacterium | 88.83 | |
| d1qbaa3 | 443 | Bacterial chitobiase (beta-N-acetylhexosaminidase) | 87.08 | |
| d1m7xa2 | 106 | 1,4-alpha-glucan branching enzyme {Escherichia col | 86.43 | |
| d2aama1 | 285 | Hypothetical protein TM1410 {Thermotoga maritima [ | 86.36 | |
| d1vema2 | 417 | Bacterial beta-amylase {Bacillus cereus [TaxId: 13 | 85.24 | |
| d2gjxa1 | 362 | beta-hexosaminidase A {Human (Homo sapiens) [TaxId | 84.47 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 84.45 | |
| d2hvma_ | 273 | Hevamine A (chitinase/lysozyme) {Para rubber tree | 84.14 | |
| d1jaka1 | 356 | beta-N-acetylhexosaminidase {Streptomyces plicatus | 83.84 | |
| d1yhta1 | 344 | Dispersin B, DspB {Actinobacillus actinomycetemcom | 82.54 | |
| d1gjwa2 | 572 | Maltosyltransferase {Thermotoga maritima [TaxId: 2 | 82.47 | |
| d2ebfx2 | 219 | Dermonecrotic toxin, ToxA {Pasteurella multocida [ | 80.8 | |
| d1ua7a1 | 78 | Bacterial alpha-Amylase {Bacillus subtilis [TaxId: | 80.21 | |
| d1jz8a5 | 292 | beta-Galactosidase, domain 3 {Escherichia coli [Ta | 80.18 |
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Probab=100.00 E-value=5.9e-66 Score=499.95 Aligned_cols=341 Identities=65% Similarity=1.241 Sum_probs=278.5
Q ss_pred ceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCC-CCCCHHHHHHHHHHHHH
Q 014447 24 ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDAS-KYGSQADLKSLIQAFRQ 102 (424)
Q Consensus 24 ~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~-~~Gt~edl~~Lv~~aH~ 102 (424)
+|++|+|.|||..+++|||++|++||||||+||||+|||+||++++++|||++.||++|| | +|||+|||++||++||+
T Consensus 2 ~~~~~~f~~~~~~~~~g~~~~i~~kLdyl~~lGv~~i~L~Pi~~~~~~~gY~~~d~~~id-~~~~G~~~~f~~lv~~~H~ 80 (347)
T d1ht6a2 2 QVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDID-ASKYGNAAELKSLIGALHG 80 (347)
T ss_dssp CCEEECCCTTGGGCTTCHHHHHHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGG-GCTTCCHHHHHHHHHHHHH
T ss_pred eeEEeccccCcCCCCCCCHHHHHHhHHHHHHcCCCEEEECCCCcCCCCCCCCccCcCcCC-cccCCCHHHHHHHHHHHhh
Confidence 789999999999999999999999999999999999999999999999999999999999 7 69999999999999999
Q ss_pred cCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 014447 103 KGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKE 182 (424)
Q Consensus 103 ~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~ 182 (424)
+||+||+|+|+||++.+|+.....+..+.++.......|.....+.....+.+....+..+.++.++||||++||+||++
T Consensus 81 ~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~n~~v~~~ 160 (347)
T d1ht6a2 81 KGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRE 160 (347)
T ss_dssp TTCEEEEEECCSBCCCSEECTTSCEEECCCSSSSSTTCCCGGGBCTTCTTTCCSCSCCCSSCCCTTSCBBCTTCHHHHHH
T ss_pred cceEEeeeccccccCCCCcccccccccccCCCCCCCcCcCccccCCCcccccccccccccccccCCCCcccccchhhhhh
Confidence 99999999999999999876555555555544444555554444444455556667777888999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHh---cC
Q 014447 183 LSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA---AG 259 (424)
Q Consensus 183 l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 259 (424)
+++++++|++++||||||+|++++++.++|+.+.+..+..+.++|.........+....+......+....+... ..
T Consensus 161 l~~~~~~wi~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (347)
T d1ht6a2 161 LKEWLLWLKSDLGFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAA 240 (347)
T ss_dssp HHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHCCSCEEECCCCCCCBCTTSSBCSCCHHHHHHHHHHHHHHTGGG
T ss_pred hhhhhhhhcccCCcceEEEechhhcChHHHHHHHHhcccccchhhhcchhhccccccchhhhhcchhhhhhhhhhhCCcc
Confidence 999999999889999999999999999999999888888778888776544322333333332223333333332 23
Q ss_pred CceeeecccchHHHHHHhcchhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCee
Q 014447 260 GAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTP 339 (424)
Q Consensus 260 ~~~~~~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P 339 (424)
.....++|.....+..++.+....+..............+...++|++|||++|+.+..+.+.+++++|++++||+||+|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fl~nHD~~R~~s~~~~~~~~~~~a~a~llt~pGiP 320 (347)
T d1ht6a2 241 SAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFPSDKVMQGYAYILTHPGIP 320 (347)
T ss_dssp SSEEEECHHHHHHHHHHTTTCGGGGSCTTSSCSSHHHHCGGGEEEESCCTTTSTTTCSSCCCGGGHHHHHHHHHHSSSEE
T ss_pred ccchhhhcchhhHHHHhhccchHHHHHHhhhccccccCChhHeEEecCCCCccCcccccCCCHHHHHHHHHHHHHcCCce
Confidence 45667888888777777777665555443333333333456779999999999999988877889999999999999999
Q ss_pred EEecCCCCCcchHHHHHHHHHHHHhc
Q 014447 340 CIFYDHFFDWGLKEAISKLAAVRNRN 365 (424)
Q Consensus 340 ~iyyG~~~~w~l~~~~~~L~~lR~~~ 365 (424)
+|||||+++|++.++|++|+++||++
T Consensus 321 ~IyyGD~~~~~~~d~i~~l~~~r~~~ 346 (347)
T d1ht6a2 321 CIFYDHFFNWGFKDQIAALVAIRKRN 346 (347)
T ss_dssp EEEHHHHHTSSCHHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCchHHHHHHHHHHHhc
Confidence 99999999999999999999999985
|
| >d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Probab=100.00 E-value=5.5e-61 Score=472.13 Aligned_cols=327 Identities=21% Similarity=0.353 Sum_probs=248.4
Q ss_pred CCCCCCceEEEeecCCCCCC-----------------------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCC
Q 014447 18 LPFTSPALLFQGFNWESSNK-----------------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGY 74 (424)
Q Consensus 18 p~~~~~~v~~~~f~~ds~~~-----------------------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY 74 (424)
|+|+++.|+||++. |++.+ .+|||+||++||||||+|||++||||||+++++++||
T Consensus 4 p~W~~~~v~Y~i~~-~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~~gi~~kLdylk~LGv~~i~l~Pi~~~~~~~gY 82 (382)
T d1ea9c3 4 PAWVKDAIFYQIFP-ERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLGVNAVYFTPLFKATTNHKY 82 (382)
T ss_dssp CTHHHHCCCCEECS-TTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHTHHHHHHHTCSEEEECCCSSCSSSSTT
T ss_pred CccccCCeEEEEEc-chhcCCCCCCCccCcccccccCCCcCccCCcCHHHHHHhhHHHHhCCCCEEEeCCCccCCCCCCC
Confidence 89999999999997 55432 2599999999999999999999999999999999999
Q ss_pred CcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccC
Q 014447 75 MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154 (424)
Q Consensus 75 ~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 154 (424)
++.||++|| |+|||++|||+||++||++||+||+|+|+||++.+|+.... ....+......+|+.... ....+.
T Consensus 83 ~~~~~~~id-~~~Gt~~df~~lv~~~h~~gi~VilD~V~NH~s~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~ 156 (382)
T d1ea9c3 83 DTEDYFQID-PQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVD---VLKNGEKSKYKDWFHIRS--LPLEVV 156 (382)
T ss_dssp SCSCTTCCC-TTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTTHHHHH---HHTTTTTCTTTTSSCBCS--SSCCCT
T ss_pred Ccccccccc-cccCCHHHHHHHHHHHHhhcceEEEeeecccccccCcchhh---hhhcCCcccccccccccc--cccccc
Confidence 999999999 99999999999999999999999999999999998751100 011111222233332111 112223
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC-CeEEeeecC
Q 014447 155 DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP-DFAVGEKWD 230 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p-~~~v~E~~~ 230 (424)
+....+....+.+.++++|++||+|+++|++++.+|++++||||||+|++++++.++++.+ +++.+| .+++||.+.
T Consensus 157 ~~~~~~~~~~~~~~~~d~n~~~~~v~~~l~~~~~~w~~~~gvDGfR~Da~~~~~~~~~~~~~~~~~~~~p~~~~~~e~~~ 236 (382)
T d1ea9c3 157 DGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFRRVVKQANPDAYILGEVWH 236 (382)
T ss_dssp TSCCSBCBSSSCTTSBBCCTTSHHHHHHHHHHHHHHHHHHCCSEEEETTCTTSCHHHHHHHHHHHHHHCTTCEEEECCCS
T ss_pred cCcccccccccccccCccccccHHHHHHHHHHHhhcccceeeeEEEecchhhCchhhhhhhhhhhhhcCCCeeEEeeecc
Confidence 3444555666788999999999999999999999999989999999999999999999988 445577 789999986
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch---hhhhhhhcC-CCCCCcCcCCCcceecc
Q 014447 231 SLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLKDSNG-KPPGFIGILPQNAVTFI 306 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~f~ 306 (424)
.... ++. ..+....+++++...+...+.+. ...+..... .........+...++|+
T Consensus 237 ~~~~-------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (382)
T d1ea9c3 237 ESSI-------------------WLE-GDQFDAVMNYPFTNAVLDFFIHQIADAEKFSFMLGKQLAGYPRQASEVMFNLL 296 (382)
T ss_dssp CCTT-------------------TTT-TTSCSEEBCHHHHHHHHHHTTSCCSCHHHHHHHHHHTTTTSCHHHHHTCEECS
T ss_pred cccc-------------------ccc-CccccccccccchhhhHhhhhccccchhHHHHHHHHHHHhchhhcccceeeee
Confidence 4320 011 13455567777766666655332 111111110 00111111123468999
Q ss_pred cCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCCC--------------c-------chHHHHHHHHHHHHhc
Q 014447 307 DNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFD--------------W-------GLKEAISKLAAVRNRN 365 (424)
Q Consensus 307 ~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~~--------------w-------~l~~~~~~L~~lR~~~ 365 (424)
+|||+.|..+....+.+++++|++++|++||+|+||||||++ | +++++||+|++||+++
T Consensus 297 ~nHD~~r~~~~~~~~~~~~~~a~~~~l~~pG~P~Iy~G~E~g~~~~~~~~~r~~~~w~~~~~~~~l~~~~~~L~~lR~~~ 376 (382)
T d1ea9c3 297 DSHDTARLLTQADGDKRKMKLAVLFQFTYFGTPCIYYGDEVGLDGGHDPGCRKCMEWDETKHDKDLFAFYQTVIRLRQAH 376 (382)
T ss_dssp CCTTSCCHHHHHCSCHHHHHHHHHHHTTSSSEECCCSSCSSCCCCCSHHHHTCCCCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred ccCcccccccccCCHHHHHHHHHHHHHHcCCCCEEEccHhhCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHHHHhcC
Confidence 999999998877656778999999999999999999999864 5 4899999999999999
Q ss_pred CCCCCC
Q 014447 366 GINTAS 371 (424)
Q Consensus 366 ~al~~G 371 (424)
|+|+.|
T Consensus 377 paL~~G 382 (382)
T d1ea9c3 377 AALRTG 382 (382)
T ss_dssp SHHHHC
T ss_pred HHhcCC
Confidence 999876
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Probab=100.00 E-value=3.4e-60 Score=462.28 Aligned_cols=328 Identities=30% Similarity=0.532 Sum_probs=241.3
Q ss_pred CCCCCCceEEEeecCCCCCCC-CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC----------CCCCCCcccccCCCCCC
Q 014447 18 LPFTSPALLFQGFNWESSNKA-GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV----------APQGYMPGRLYDLDASK 86 (424)
Q Consensus 18 p~~~~~~v~~~~f~~ds~~~~-~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~----------~~~gY~~~d~~~id~~~ 86 (424)
-.+.+++|++|.|.|++.+++ +|+|++|++||+|||+||||+|||+|+++++ .+|||++.|| .|| |+
T Consensus 11 ~~~~g~~~~~~~f~w~~~~~~~~~~~~~i~~kl~yl~~lGv~aIwl~P~~~~~~~~~~~~~~~~~hgY~~~dy-~vd-~~ 88 (357)
T d1gcya2 11 RYHGGDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDF-NKN-GR 88 (357)
T ss_dssp CCGGGCCCEEECCCTTHHHHSTTTHHHHHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTCSSS-CSC-SS
T ss_pred eecCCCEEEEeeeecCCCCCCCCcHHHHHHHHHHHHHHcCCCEEEeCcCeeCCccCCCCCCCCCCCCcChhhc-ccC-cc
Confidence 345678999999999988776 5669999999999999999999999999864 4789999997 699 99
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC
Q 014447 87 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF 166 (424)
Q Consensus 87 ~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (424)
|||++||++||++||++||+||+|+|+||++.+|+.....+..+. ..|.... .....+. ........++
T Consensus 89 ~Gt~~df~~LV~~aH~~GI~VIlD~V~NH~~~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~--~~~~~~~~~~ 157 (357)
T d1gcya2 89 YGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQ-------GFWRNDC--ADPGNYP--NDCDDGDRFI 157 (357)
T ss_dssp SCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCSSCSCCCCSSS-------SCBGGGS--CCCSSSC--BTTBSSCCST
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEeccccCCCCCccccccccCC-------Ccccccc--CCCCCCC--CCCCcccccc
Confidence 999999999999999999999999999999998864332211110 1111110 0001111 1122334567
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCC-CeEEeeecCCCCCCCCCCCCCCCC
Q 014447 167 QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSP-DFAVGEKWDSLSYGPDGKPDANQD 245 (424)
Q Consensus 167 ~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p-~~~v~E~~~~~~~~~~~~~~~~~~ 245 (424)
..+||||++||+|++++++++++|++++||||||+|+|++++.++|+++++..+| .+++||+|....... ........
T Consensus 158 ~~~~dln~~np~v~~~~~~~~~~~~~~~giDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~-~~~~~~~~ 236 (357)
T d1gcya2 158 GGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYP-NWDWRNTA 236 (357)
T ss_dssp TSTTBBCTTSHHHHHHHHHHHHHHHHHSCEEEEEESCGGGSCHHHHHHHHHHHCTTSEEEECCCCCGGGSC-TTSGGGGS
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhcCCHHHHHHHHhhcCCCceeeeeeccCccchh-hhhhhccc
Confidence 8899999999999999999999888889999999999999999999999888877 779999986533110 00111112
Q ss_pred CchhHHHHHHHhcCCceeeecccchHHHHHHhcchhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCC------
Q 014447 246 GHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP------ 319 (424)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~------ 319 (424)
.+...+..+.... ..+.++|.+...+......+....... .. ....+..+++|++|||++|..+...
T Consensus 237 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~v~fl~NHD~~r~~~~~~~~~~~~ 309 (357)
T d1gcya2 237 SWQQIIKDWSDRA--KCPVFDFALKERMQNGSIADWKHGLNG---NP--DPRWREVAVTFVDNHDTGYSPGQNGGQHHWA 309 (357)
T ss_dssp CHHHHHHHHHHHH--TSCEECHHHHHHHHHSCGGGGGGSGGG---CS--SHHHHTTEEECSCCTTTSBCSSGGGBCCSSC
T ss_pred hhhhhhHhHhhhc--cccccchhhhhhhhhhhHHHHHHHHhh---Cc--cccccceeEEeecCCCcccccccCCcccccc
Confidence 2344445555433 344567766655544322222221111 01 1112356799999999999865432
Q ss_pred CCchhHHHHHHHHHcCCCeeEEecCCCCCcchHHHHHHHHHHHHhcC
Q 014447 320 FPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNG 366 (424)
Q Consensus 320 ~~~~~~~~a~a~~l~~pG~P~iyyG~~~~w~l~~~~~~L~~lR~~~~ 366 (424)
...+++++|++++||+||+|+||||||++|++.+.|++|++|||+++
T Consensus 310 ~~~~~~~la~alllt~pGiP~IyyGde~d~g~~d~i~~li~iRk~~~ 356 (357)
T d1gcya2 310 LQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAG 356 (357)
T ss_dssp CCGGGHHHHHHHHHHSSSEEEEEHHHHHTSSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCccEEEcCCcccCCChHHHHHHHHHHHhCC
Confidence 34568999999999999999999999999999999999999999965
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=3.9e-61 Score=473.52 Aligned_cols=322 Identities=23% Similarity=0.372 Sum_probs=245.3
Q ss_pred cCCCCCCceEEEeecCCCCCC-----------------------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCC
Q 014447 17 FLPFTSPALLFQGFNWESSNK-----------------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQG 73 (424)
Q Consensus 17 ~p~~~~~~v~~~~f~~ds~~~-----------------------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~g 73 (424)
+|+|++..|+|+++. |++.+ .+|||+||++||||||+||||+||||||++++++||
T Consensus 5 ~P~w~~~~viY~v~~-~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kldyl~~LGv~~i~L~Pi~~~~~~~g 83 (382)
T d1j0ha3 5 APDWVKDTVWYQIFP-ERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLGITGIYLTPIFRSPSNHK 83 (382)
T ss_dssp CCGGGGGCCEEEECG-GGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSSSSC
T ss_pred CCcchhCCEEEEEEc-chhcCCCCCCCccccccccccCCccCccCCcCHHHHHHhHHHHHHcCCCEEEeCCCCcCCcccC
Confidence 699999999999996 44322 259999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCcc
Q 014447 74 YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEY 153 (424)
Q Consensus 74 Y~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 153 (424)
|++.||++|| |+|||+++||+||++||++||+||+|+|+||++.+|+.....+ ..+......+|+... ....+
T Consensus 84 y~~~d~~~vd-~~~Gt~~~~~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~ 156 (382)
T d1j0ha3 84 YDTADYFEVD-PHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVW---KNGESSKYKDWFHIH---EFPLQ 156 (382)
T ss_dssp CSCSEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHHHHHH---HHGGGCTTGGGBCBS---SSSCC
T ss_pred CCcccccccC-CCCCCHHHHHHHHHHhhhccceEEEEeeecccccccccchhhh---ccCCccccCCccccc---ccccc
Confidence 9999999999 9999999999999999999999999999999999875211000 000111122222211 11122
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHH---HhcCC-CeEEeeec
Q 014447 154 SDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP-DFAVGEKW 229 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~---~~~~p-~~~v~E~~ 229 (424)
.+.......+.++..+++||++||+||++|++++++|++++||||||+|+|++++.++++++. ++.+| .+++||.|
T Consensus 157 ~~~~~~~~~~~~~~~~~dln~~n~~vr~~l~~~~~~wi~~~giDGfR~Da~~~~~~~~~~~~~~~~~~~~p~~~~i~e~~ 236 (382)
T d1j0ha3 157 TEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALKPDVYILGEIW 236 (382)
T ss_dssp CSSSCSBCBSTTCTTSBBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred ccccccccccccCCCCcccccChHHHHHHHHHHHHhHhhhccccEEEecchhhcchhhhhhhhhhhhccCCCcccccccc
Confidence 223344555667899999999999999999999999998899999999999999999999984 45577 67999998
Q ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcchhh---hh----hhhcCCCCCCcCcCCCcc
Q 014447 230 DSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELW---RL----KDSNGKPPGFIGILPQNA 302 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~ 302 (424)
..... ++ ...+..+.+++++...+...+.+... .+ ......... ..+...
T Consensus 237 ~~~~~-------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 293 (382)
T d1j0ha3 237 HDAMP-------------------WL-RGDQFDAVMNYPFTDGVLRFFAKEEISARQFANQMMHVLHSYPN---NVNEAA 293 (382)
T ss_dssp SCCGG-------------------GC-SSSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTSCH---HHHHTC
T ss_pred ccchh-------------------hh-cccccccccccccchhhhhhhhcccccchhhhhhhhhccccccc---ccCccc
Confidence 64320 01 11346667777776666665533211 11 110000010 112345
Q ss_pred eecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC--------------Cc-------chHHHHHHHHHH
Q 014447 303 VTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF--------------DW-------GLKEAISKLAAV 361 (424)
Q Consensus 303 ~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~--------------~w-------~l~~~~~~L~~l 361 (424)
++|++|||++|..+....+.++.++|++++|++||+|+||||+|+ +| ++.++||+|++|
T Consensus 294 ~~f~~nHD~~R~~~~~~~~~~~~~~a~~lllt~pG~P~iy~G~E~G~~~~~~~~~r~~~~W~~~~~~~~l~~~~k~L~~l 373 (382)
T d1j0ha3 294 FNLLGSHDTSRILTVCGGDIRKVKLLFLFQLTFTGSPCIYYGDEIGMTGGNDPECRKCMVWDPMQQNKELHQHVKQLIAL 373 (382)
T ss_dssp BCBSCCTTSCCHHHHTTTCHHHHHHHHHHHHHSSSCCEEETTGGGTCCCCSTTGGGCCCCCCTTTSCHHHHHHHHHHHHH
T ss_pred eeeccCCCCCccccccCChHHHHHHHHHHHHHcCCCCEEEcChhhCcCCCCCcccccCCCCCccccChHHHHHHHHHHHH
Confidence 789999999999888776677899999999999999999999974 45 489999999999
Q ss_pred HHhcCCCC
Q 014447 362 RNRNGINT 369 (424)
Q Consensus 362 R~~~~al~ 369 (424)
|+++|+|+
T Consensus 374 R~~~paL~ 381 (382)
T d1j0ha3 374 RKQYRSLR 381 (382)
T ss_dssp HHHCHHHH
T ss_pred HhcCHHhC
Confidence 99999985
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=100.00 E-value=7.4e-59 Score=454.33 Aligned_cols=332 Identities=30% Similarity=0.526 Sum_probs=254.4
Q ss_pred CCCCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC---CCCCCccccc---------CCCCCC
Q 014447 19 PFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---PQGYMPGRLY---------DLDASK 86 (424)
Q Consensus 19 ~~~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~---~~gY~~~d~~---------~id~~~ 86 (424)
+-..++||+|.|.|++.. ++|.++||++||||||+||||+||||||+++.+ +|||++.||+ .|| |+
T Consensus 5 ~~~~~~~~~q~f~w~~~~-~~~~~~gi~~kLdylk~LGv~~Iwl~Pv~~~~~~~~~~gY~~~dy~~~~~~~~~~~vd-~~ 82 (361)
T d1mxga2 5 ELEEGGVIMQAFYWDVPG-GGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVE-TR 82 (361)
T ss_dssp CGGGTCCEEECCCTTCCC-SSCHHHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSS-CS
T ss_pred ccccCCEEEEeeecCCCC-CCchHHHHHHHHHHHHhcCCCEEEeCcCeeCCCCCCCCCCCcccccccCccccccCCC-CC
Confidence 345678999999999986 467899999999999999999999999998653 7999999997 689 99
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCC---c--ceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCC
Q 014447 87 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR---G--IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDD 161 (424)
Q Consensus 87 ~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~---~--~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 161 (424)
|||++||++||++||++|||||||+|+||++.+++... + .|..+.. .....+.... ..+........
T Consensus 83 ~Gt~~d~~~LV~~aH~~GikVIlD~V~NH~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~ 154 (361)
T d1mxga2 83 FGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSK---VASGKYTANY-----LDFHPNELHCC 154 (361)
T ss_dssp SCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCCEEEEETTTTEEEEEECTT---CTTCCSCCCG-----GGBSSSSSCSC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEeeeccccCCccccCCcccccccccccc---ccCCCCCccc-----cccCccccccc
Confidence 99999999999999999999999999999998764211 1 1111111 1011111000 01111111222
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHH---HHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEeeecCCCCCCCCC
Q 014447 162 TGEDFQPAPDIDHLNPRVQKELSDW---MNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDG 238 (424)
Q Consensus 162 ~~~~~~~~~dln~~np~v~~~l~~~---~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~v~E~~~~~~~~~~~ 238 (424)
....+..+||+++.++.++.++.+. +.+|++++||||||+|+|++++.+||+++.+..+ .+++||+|..
T Consensus 155 ~~~~~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~giDGfR~Daa~~v~~~f~~~~~~~~~-~~~~gE~~~~------- 226 (361)
T d1mxga2 155 DEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKGYGAWVVRDWLNWWG-GWAVGEYWDT------- 226 (361)
T ss_dssp CSCCCTTSCBBCTTSHHHHHHHTSSTTSHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHC-CCEEECCCCS-------
T ss_pred ccccccCcccccCCcchhHHHHHHHHHHHhhhhhhcCCcceeecchhhCCHHHHHHHHhhcC-CceecccccC-------
Confidence 2345578999999999999998653 4455666999999999999999999999988765 4678999953
Q ss_pred CCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc-hhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCccc
Q 014447 239 KPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRL 317 (424)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~ 317 (424)
....+..|.... ..++|||+++..+..++.+ ....+..............+.++++|++|||++|..+
T Consensus 227 --------~~~~~~~~~~~~--~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fl~NHD~~R~~~- 295 (361)
T d1mxga2 227 --------NVDALLSWAYES--GAKVFDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWN- 295 (361)
T ss_dssp --------CHHHHHHHHHHH--TSEEECHHHHHHHHHHHTTTCHHHHHHHHHTTCSSTTTCTTTEEEESCCSSCCCCSC-
T ss_pred --------CHHHHhhhhhcc--CCccccchHHHHHHHHHhcCChHHHHHHHhhccccccCCHHHheeeCcccCCccccc-
Confidence 256677777643 4567999999888888744 3344433333233444445678899999999998743
Q ss_pred CCCCchhHHHHHHHHHcCCCeeEEecCCCCCcchHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEECC
Q 014447 318 WPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGD 389 (424)
Q Consensus 318 ~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~~w~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r~~ 389 (424)
.++|+|++||+||+|+||||++.+|...+-+++|+++|+. ++.|.++.+..++++++|.|++
T Consensus 296 -------~~~a~a~llt~pGiP~iyYGd~~~~~~~~~~~~l~~~~~~---~~~g~~~~~~~~~d~~~f~R~g 357 (361)
T d1mxga2 296 -------KYPAYAFILTYEGQPVIFYRDFEEWLNKDKLINLIWIHDH---LAGGSTTIVYYDNDELIFVRNG 357 (361)
T ss_dssp -------HHHHHHHHHHSSSEEEEEHHHHHTTSCHHHHHHHHHHHHH---TCCSCEEEEEECSSEEEEEECC
T ss_pred -------HHHHHHHHHcCCCccEEEeCCCcccCCcHHHHHHHHHHHH---hcCCCeEEEEECCCEEEEEeCC
Confidence 4689999999999999999999999888999999999987 5688899999999999999953
|
| >d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclomaltodextrinase, central domain species: Flavobacterium sp. 92 [TaxId: 197856]
Probab=100.00 E-value=1.5e-60 Score=475.35 Aligned_cols=332 Identities=19% Similarity=0.278 Sum_probs=242.0
Q ss_pred CCCCCCceEEEeecCCCC-----------------------CCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC----C
Q 014447 18 LPFTSPALLFQGFNWESS-----------------------NKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV----A 70 (424)
Q Consensus 18 p~~~~~~v~~~~f~~ds~-----------------------~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~----~ 70 (424)
++|++.+||||+|. |++ +++||||+||++||||||+||||+||||||++++ +
T Consensus 6 ~~~~~~~viY~i~~-~~F~~gd~~nd~~~~~~~~~~~~~~~~~~gGd~~Gl~~kLdyl~~LGv~~I~l~Pi~~~~~~~~~ 84 (422)
T d1h3ga3 6 QGFGPGDAIYQIMP-DRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIAGLGFTQLWPTPLVENDAAAYS 84 (422)
T ss_dssp CCCCTTCCEEEECH-HHHCCSCGGGSSCTTCSSCCCTTSTTSCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECCCSSCG
T ss_pred CCCCCCCcEEEeCh-hhccCCCCCcCccCCccccccccccCCCCCcCHHHHHHhHHHHHHCCCCEEEeCCcccCCCCCCC
Confidence 67999999999996 322 3357999999999999999999999999999865 4
Q ss_pred CCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCC----CcceeecCCCCCCCCCCCCCccc
Q 014447 71 PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDG----RGIYCIFEGGTSDDRLDWGPSFI 146 (424)
Q Consensus 71 ~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~----~~~~~~~~~~~~~~~~~w~~~~~ 146 (424)
+|||++.||++|| |+|||++|||+||++||++||+||+|+|+||++.+|+.. ...+..+.. ...+..+... .
T Consensus 85 ~~GY~~~d~~~vd-~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~ 160 (422)
T d1h3ga3 85 YHGYAATDHYRID-PRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGG--KFVPTQHHRV-A 160 (422)
T ss_dssp GGCCSCSEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSGGGGSCSSTTSBSCCS--SCCBCCCCGG-G
T ss_pred CCCCCccccCCcc-cccCCHHHHHHHHHHHHHhCccccccCccccccccchhhccccccccccccc--cccccccccc-c
Confidence 6899999999999 999999999999999999999999999999999988521 111111111 0001111100 0
Q ss_pred ccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHH---hcCC-C
Q 014447 147 CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYME---NTSP-D 222 (424)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~---~~~p-~ 222 (424)
..+...+.....++..+.+...+|+||++||+||++|++++++|++++||||||+|++++++.+||+++.+ +..| .
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~vr~~~~~~~~~w~~~~gvDGfR~Da~~~~~~~f~~~~~~~~~~~~~~~ 240 (422)
T d1h3ga3 161 VQDPYAAQADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLTEYTRRLMAEYPRL 240 (422)
T ss_dssp GSCTTCCHHHHHHHHHSBSSTTSCBBCTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHHHHHHHHHHHHHCTTC
T ss_pred ccccccccCcccceeecccccCccccccccHHHHHHHhhhHHHHhhheeeeeeeecccccccchhhhhhhhhhhhccccc
Confidence 00000000011123344567899999999999999999999999998999999999999999999999844 4566 7
Q ss_pred eEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHH-------hcCCceeeecccchHHHHHHhcch-----hhhhhhhcCC
Q 014447 223 FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQ-------AAGGAVAAFDFTTKGILQAAVQGE-----LWRLKDSNGK 290 (424)
Q Consensus 223 ~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~df~~~~~~~~~~~~~-----~~~~~~~~~~ 290 (424)
+++||.|.... ..+..+.. ......+.++|.....+..++... ...+.....
T Consensus 241 ~~i~E~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 304 (422)
T d1h3ga3 241 NMVGEEWSTRV---------------PVVARWQRGKANFDGYTSHLPSLMDFPLVDAMRNALSKTGEENGLNEVYETLS- 304 (422)
T ss_dssp EEEECCCCSCH---------------HHHHTTSTTCCCTTCCCCCCCEEBCHHHHHHHHHHHHCTTCSSTTHHHHHHHH-
T ss_pred eEEeeccccch---------------hhhhhhccccccccccccchhhhhhhhHHHHHHHHHhhccccchhHHHHHHHh-
Confidence 79999986421 11111111 113456678888777776665221 111111110
Q ss_pred CCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCCC--------------------c-
Q 014447 291 PPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFD--------------------W- 349 (424)
Q Consensus 291 ~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~~--------------------w- 349 (424)
.......+...++|++|||++|..+.......+.++|++++||+||+|+||||||++ |
T Consensus 305 -~~~~~~~~~~~~~f~~nHD~~R~~~~~~~~~~~~~~a~~~llt~pG~P~iy~G~E~G~~~~~~~~~d~~~r~~~p~~w~ 383 (422)
T d1h3ga3 305 -LDYLYPEPQNLVLFGGNHDMARMFSAAGEDFDRWRMNLVFLMTMPRIPQFYSGDEILMTSTVKGRDDASYRRDFPGGWA 383 (422)
T ss_dssp -GGGGSSSGGGSEEESCCTTSCCHHHHTTSCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCCSSSCGGGGSCCCTTSST
T ss_pred -hhcccccccceeeeecccccccccccccccHHHHHHHHHHHHHcCCCcEEEcChhhCCcCCCCCCCCcchhccCccccC
Confidence 000011234568999999999998887767778999999999999999999999843 3
Q ss_pred -----------------chHHHHHHHHHHHHhcCCCCCC
Q 014447 350 -----------------GLKEAISKLAAVRNRNGINTAS 371 (424)
Q Consensus 350 -----------------~l~~~~~~L~~lR~~~~al~~G 371 (424)
++++++|+|++||+++|+|+.|
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~lR~~~paL~~G 422 (422)
T d1h3ga3 384 GDKANAFSGAGLTSQQRAAQDLVRKLANWRKNQPVIHNG 422 (422)
T ss_dssp TCSSCTTTCTTCCHHHHHHHHHHHHHHHHHTTCHHHHHC
T ss_pred cccccCcCccccchhHHHHHHHHHHHHHHHhcCHHhhCC
Confidence 2799999999999999999876
|
| >d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus niger, acid amylase [TaxId: 5061]
Probab=100.00 E-value=1.5e-60 Score=469.68 Aligned_cols=326 Identities=19% Similarity=0.275 Sum_probs=239.7
Q ss_pred CCCCCCceEEEeecCCCCC----C------------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--------CCCC
Q 014447 18 LPFTSPALLFQGFNWESSN----K------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------APQG 73 (424)
Q Consensus 18 p~~~~~~v~~~~f~~ds~~----~------------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--------~~~g 73 (424)
+.| ++.|+||+|. |++. + .||||+||++||||||+|||++|||+||++++ .+||
T Consensus 4 ~~W-~~~~iY~i~~-~~F~~~~~~~~~~~~~~~~~~~gG~~~g~~~kLdyL~~LGv~~I~L~Pi~~~~~~~~~~~~~~~g 81 (381)
T d2aaaa2 4 ASW-RTQSIYFLLT-DRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHG 81 (381)
T ss_dssp HHH-TTCCEEECCH-HHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTTS
T ss_pred hhh-CCCcEEEEEe-CcccCCCCCCCCCCCCCcCCcCCcCHHHHHHHHHHHHHcCCCEEEeCCCccCCccCCCCCCCCcc
Confidence 456 7779999986 3322 1 25999999999999999999999999999742 4699
Q ss_pred CCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCcc
Q 014447 74 YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEY 153 (424)
Q Consensus 74 Y~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 153 (424)
|.+.||++|| |+|||.++||+||++||++||+||+|+|+||++.+++....++..+... ....+...... ...|
T Consensus 82 Y~~~d~~~id-~~~Gt~~~~k~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~ 155 (381)
T d2aaaa2 82 YWQQKIYDVN-SNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPF---DSSSYFHPYCL--ITDW 155 (381)
T ss_dssp CSEEEEEEEC-TTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCBSSCGGGCCGGGSBSC---CSGGGBCCCCB--CCCT
T ss_pred cccccccccc-cccCCHHHHHHHHHHHhhhhhcccccccccccccccCCccccccccCCc---ccccccCCCcc--cccc
Confidence 9999999999 9999999999999999999999999999999998886433333222110 00000000000 0001
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEeeecCC
Q 014447 154 SDG--QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDS 231 (424)
Q Consensus 154 ~~~--~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~v~E~~~~ 231 (424)
.+. ......+.+...+||||++||+||++|++++++|++++||||||+|++++++++||+.+.+. .+++++||++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~pdln~~np~v~~~~~~~~~~~~~~~giDGfR~D~~~~~~~~f~~~~~~~-~~~~~igE~~~~ 234 (381)
T d2aaaa2 156 DNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNKA-SGVYCVGEIDNG 234 (381)
T ss_dssp TCHHHHHHSBEECSSSEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEESCSTTSCGGGHHHHHHH-HTSEEEECCCCS
T ss_pred ccccccCCCccCCccccCccccccchhhhhHHhhhhhhcccceeeeeeeecccccccHHHHHHHHhc-ccccccccccCC
Confidence 100 00112234567899999999999999999999999989999999999999999999998443 447899998853
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc---hhhhhhhhcCCCCCCcCcCCCcceecccC
Q 014447 232 LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG---ELWRLKDSNGKPPGFIGILPQNAVTFIDN 308 (424)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~f~~n 308 (424)
. ......+ .....++++|++...+...+.+ ....+......... ....+..+++|++|
T Consensus 235 ~---------------~~~~~~~---~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~fl~n 295 (381)
T d2aaaa2 235 N---------------PASDCPY---QKVLDGVLNYPIYWQLLYAFESSSGSISNLYNMIKSVAS-DCSDPTLLGNFIEN 295 (381)
T ss_dssp C---------------HHHHGGG---GGTSSEEBCHHHHHHHHHHHSSTTSCHHHHHHHHHHHHH-HCSCGGGSEECSCC
T ss_pred C---------------chhhhcc---ccccccccchhHHHHHHHHHhcCCccHHHHHHHHHhhhh-ccCCchhhcccccc
Confidence 1 1111111 2356778999988877776533 22222221110000 01124556899999
Q ss_pred CCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCCC--------------c-------chHHHHHHHHHHHHhcCC
Q 014447 309 HDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFD--------------W-------GLKEAISKLAAVRNRNGI 367 (424)
Q Consensus 309 HD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~~--------------w-------~l~~~~~~L~~lR~~~~a 367 (424)
||++|+.+..+ +.++.++|++++||+||+|+||||+|++ | ++.++||+|++|||+++|
T Consensus 296 HD~~R~~~~~~-~~~~~~~a~a~llt~pG~P~iy~G~E~g~~g~~~p~~r~~~~~~~~~~~~~l~~~i~~L~~lRk~~~a 374 (381)
T d2aaaa2 296 HDNPRFAKYTS-DYSQAKNVLSYIFLSDGIPIVYAGEEQHYAGGKVPYNREATWLSGYDTSAELYTWIATTNAIRKLAIA 374 (381)
T ss_dssp TTSCCGGGTCC-CHHHHHHHHHHHHHSSSEEEEETTTTTTCCCCTTTTTCCCGGGGTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhhcccC-CHHHHHHHHHHHHHcCCCcEeEcCcccCCCCCCCcccccccCcCCCccChHHHHHHHHHHHHHhhChh
Confidence 99999988765 6778999999999999999999999864 2 489999999999999999
Q ss_pred CCCCC
Q 014447 368 NTASR 372 (424)
Q Consensus 368 l~~G~ 372 (424)
|+.|-
T Consensus 375 l~~~~ 379 (381)
T d2aaaa2 375 ADSAY 379 (381)
T ss_dssp HCTTT
T ss_pred hcCCC
Confidence 99874
|
| >d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Probab=100.00 E-value=1.6e-59 Score=466.07 Aligned_cols=337 Identities=21% Similarity=0.308 Sum_probs=236.2
Q ss_pred ccCCCCCCceEEEeecCCCCCC-------------------------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC-
Q 014447 16 IFLPFTSPALLFQGFNWESSNK-------------------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV- 69 (424)
Q Consensus 16 ~~p~~~~~~v~~~~f~~ds~~~-------------------------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~- 69 (424)
++|+|.+.+|+||+|. |++.+ .||||+||++||||||+||||+||||||++++
T Consensus 1 ~~~~~~~~~v~Y~i~~-drF~~gd~~~~~~~~~~~~~~~~~~~~~~~~gGd~~gi~~kLdyl~~LGv~~I~L~Pi~~~~~ 79 (407)
T d1qhoa4 1 SSSASVKGDVIYQIII-DRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLKQLGVTTIWLSPVLDNLD 79 (407)
T ss_dssp CTTSCCTTCCEEEECG-GGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHTHHHHHHHTCCEEEECCCEEECS
T ss_pred CCchhhcCCEEEEech-hhhcCCCCCCCcccccccccCCcccccCccCCcCHHHHHHHHHHHHHcCCCEEEeCccccCCc
Confidence 3699999999999997 65432 26999999999999999999999999998753
Q ss_pred --------CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcc---eeecCCCCCC-C
Q 014447 70 --------APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGI---YCIFEGGTSD-D 137 (424)
Q Consensus 70 --------~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~---~~~~~~~~~~-~ 137 (424)
++|||++.||++|| |+|||++|||+||++||++||+||||+|+||++..|+..... ...+..+... .
T Consensus 80 ~~~~~~~~~~~gY~~~d~~~id-~~~Gt~~d~k~Lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~ 158 (407)
T d1qhoa4 80 TLAGTDNTGYHGYWTRDFKQIE-EHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGN 158 (407)
T ss_dssp SCSSTTCCCTTSCSEEEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBTTBTTSTTTTCEEETTEEEEC
T ss_pred ccCCCCCCCCCceeeeecCCCC-CCCCCHHHHHHHHHHhhhcccceeeccccccccCCccccccccccCcccccCccccc
Confidence 46999999999999 999999999999999999999999999999999876521100 0000000000 0
Q ss_pred CCCCCC---cccccCCCccCCC---CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHH
Q 014447 138 RLDWGP---SFICRGDKEYSDG---QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSI 211 (424)
Q Consensus 138 ~~~w~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~ 211 (424)
..++.. .....+...|.+. ........+...+||||++||+|++++++++++|++ +||||||+|++++++.+|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~~-~gvDGfR~D~~~~~~~~f 237 (407)
T d1qhoa4 159 YFDDATKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVA-HGADGLRIDAVKHFNSGF 237 (407)
T ss_dssp SSSCTTTCCBCCSCBCSCTTCHHHHHHSBCEETTTEEEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCHHH
T ss_pred cccccccccccccCCCCCcccccccccccccCCccccCchhhhhhhhHHHHHHHhHHHHhh-hcccccccccccccchhH
Confidence 000000 0000001111100 001122234566899999999999999999999997 999999999999999999
Q ss_pred HHHHHH---hcCCCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc---hhhhhh
Q 014447 212 TKVYME---NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG---ELWRLK 285 (424)
Q Consensus 212 ~~~~~~---~~~p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~---~~~~~~ 285 (424)
|+++.+ +..+.+++||++.+.+ .... ......+.. ......++|.+...+...+.. ....+.
T Consensus 238 ~~~~~~~i~~~~~~~~~gE~~~~~~-------~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 305 (407)
T d1qhoa4 238 SKSLADKLYQKKDIFLVGEWYGDDP-------GTAN---HLEKVRYAN--NSGVNVLDFDLNTVIRNVFGTFTQTMYDLN 305 (407)
T ss_dssp HHHHHHHHHHHCCCEEEECCCCCCT-------TSTT---HHHHHHHHH--HSSCEEBCHHHHHHHHHHHTSCSSCHHHHH
T ss_pred HHHHHHHHHhccCcceeeeecCCCh-------hhhH---HHHhhcccc--ccccceehhhHHHHHHHHhhhcchhhhHHH
Confidence 999844 4456889999986422 1100 111222332 334556777766666554422 122211
Q ss_pred hhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCCC--------------c--
Q 014447 286 DSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFD--------------W-- 349 (424)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~~--------------w-- 349 (424)
........ ....+...++|++|||++|+.+... +.+++++|++++|++||+|+||||||++ |
T Consensus 306 ~~~~~~~~-~~~~~~~~~~f~~nHD~~R~~~~~~-~~~~~~~a~a~ll~~pGiP~iyyGdE~G~~g~~d~~~r~~~~~~~ 383 (407)
T d1qhoa4 306 NMVNQTGN-EYKYKENLITFIDNHDMSRFLSVNS-NKANLHQALAFILTSRGTPSIYYGTEQYMAGGNDPYNRGMMPAFD 383 (407)
T ss_dssp HHHHHHHH-HCTTGGGCEECSCCTTSCCHHHHCC-CHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTTTCCCCCCCC
T ss_pred HHHHHhhh-ccccchhhceecccCCccccccccC-CHHHHHHHHHHHHHcCCCcEEecCHhhCCCCCCCccccccCCccc
Confidence 11100000 0012345689999999999988765 6788999999999999999999999753 3
Q ss_pred ---chHHHHHHHHHHHHhcCCCC
Q 014447 350 ---GLKEAISKLAAVRNRNGINT 369 (424)
Q Consensus 350 ---~l~~~~~~L~~lR~~~~al~ 369 (424)
++++++|+|++|||++|||+
T Consensus 384 ~~~~~~~~~~~L~~lR~~~paLr 406 (407)
T d1qhoa4 384 TTTTAFKEVSTLAGLRRNNAAIQ 406 (407)
T ss_dssp TTSHHHHHHHHHHHHHHHCHHHH
T ss_pred CChHHHHHHHHHHHHHhhCHhhC
Confidence 58999999999999999985
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=100.00 E-value=9.7e-59 Score=456.23 Aligned_cols=322 Identities=22% Similarity=0.345 Sum_probs=238.9
Q ss_pred cCCCCCCceEEEeecCCCCCC------------------------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCC
Q 014447 17 FLPFTSPALLFQGFNWESSNK------------------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ 72 (424)
Q Consensus 17 ~p~~~~~~v~~~~f~~ds~~~------------------------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~ 72 (424)
+|.|+++.|+|++|. |++.+ .+|||+||++||||||+||||+||||||++++.++
T Consensus 4 ~P~w~~~~viY~~~~-~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kLdyl~~lGi~~I~l~Pv~~~~~~~ 82 (382)
T d1wzla3 4 TPEWAKEAVIYQIFP-ERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHH 82 (382)
T ss_dssp CCSGGGGCCEEEECG-GGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSSSS
T ss_pred CCccccCCEEEEEEc-chhcCCCCCCCCccccccccccccccCCCCCcCHHHHHHhhHHHHHCCCCEEEECCcCCCCccc
Confidence 699999999999997 54322 25999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCc
Q 014447 73 GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKE 152 (424)
Q Consensus 73 gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 152 (424)
||++.||++|| |+|||.+|||+||++||++||+||+|+|+||++.+|+....... .+......+|+....+. ..
T Consensus 83 gY~~~~~~~vd-~~~Gt~~d~~~lv~~~H~~Gi~vilD~V~NH~s~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~ 156 (382)
T d1wzla3 83 KYDTADYLAID-PQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQ---KGEQSRYKDWFFIEDFP--VS 156 (382)
T ss_dssp CCSCSEEEEEC-TTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHH---HGGGCTTGGGBCBSSSS--CC
T ss_pred CCccccccccc-cCCCCHHHHHHHHHHHHhcccceEeeeeecccccccccccchhh---cCccccccccccccccc--cc
Confidence 99999999999 99999999999999999999999999999999988752110000 00000111111110000 00
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC-CeEEeee
Q 014447 153 YSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP-DFAVGEK 228 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p-~~~v~E~ 228 (424)
............++..+||||++||+|++++++++++|++ +||||||+|++++++.++++.+ +++.+| .+++||.
T Consensus 157 ~~~~~~~~~~~~~~~~~~dLn~~n~~v~~~~~~~~~~w~~-~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~~i~e~ 235 (382)
T d1wzla3 157 KTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWME-QGIDGWRLDVANEVDHAFWREFRRLVKSLNPDALIVGEI 235 (382)
T ss_dssp CSSCCSBCBSSSSCTTCBBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred cCCCCcccccccccccCCccCCCCHHHHHHHHHHHHHHHH-cCCCceeecchhhcchhhhhHHHHHHHhhCCceEEeeec
Confidence 1111122334557789999999999999999999999998 8999999999999999999988 455577 7799999
Q ss_pred cCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh-cchhh--hh----hhhcCCCCCCcCcCCCc
Q 014447 229 WDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELW--RL----KDSNGKPPGFIGILPQN 301 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~-~~~~~--~~----~~~~~~~~~~~~~~~~~ 301 (424)
+..... ++ ...+....+++.+...+.... .+... .. .......+ ...+..
T Consensus 236 ~~~~~~-------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 292 (382)
T d1wzla3 236 WHDASG-------------------WL-MGDQFDSVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYP---EQAAQG 292 (382)
T ss_dssp SSCCGG-------------------GC-SSSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHTTSC---HHHHTT
T ss_pred ccccch-------------------hh-cccccchhhhhhHHHHHHHhhhcCccchhhHHHHHHhhhhccc---cccccc
Confidence 864320 00 012355566666665555443 22111 00 00000001 011234
Q ss_pred ceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC--------------Cc-------chHHHHHHHHH
Q 014447 302 AVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF--------------DW-------GLKEAISKLAA 360 (424)
Q Consensus 302 ~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~--------------~w-------~l~~~~~~L~~ 360 (424)
.++|++|||+.|..+....+..+.++|++++||+||+|+||||||+ +| ++++++|+|++
T Consensus 293 ~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~llt~pG~P~iy~G~E~g~~g~~~~~~r~~~~W~~~~~~~~l~~~~~~L~~ 372 (382)
T d1wzla3 293 LWNLLDSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAGATDPDCLRPMIWEEKEQNRGLFEFYKELIR 372 (382)
T ss_dssp CEEESCCTTSCCHHHHTTTCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCGGGSCHHHHHHHHHHHH
T ss_pred ceeeecCCCccchHhhcCCCHHHHHHHHHHHHHcCCCCEEEcCcccCCCCCCCccccCCCCCCccccChHHHHHHHHHHH
Confidence 5789999999999887776777899999999999999999999985 45 49999999999
Q ss_pred HHHhcCCCC
Q 014447 361 VRNRNGINT 369 (424)
Q Consensus 361 lR~~~~al~ 369 (424)
|||++|+|+
T Consensus 373 lR~~~paL~ 381 (382)
T d1wzla3 373 LRHRLASLT 381 (382)
T ss_dssp HHHHCHHHH
T ss_pred HHhhCHhhC
Confidence 999999985
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Probab=100.00 E-value=1e-57 Score=451.24 Aligned_cols=323 Identities=28% Similarity=0.505 Sum_probs=240.4
Q ss_pred CceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCccccc---------CCCCCCCCCHH
Q 014447 23 PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLY---------DLDASKYGSQA 91 (424)
Q Consensus 23 ~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~---------~id~~~~Gt~e 91 (424)
++|++|.|.|++..+ ||+++||++||||||+||||+||||||+++. .++||++.++| .|| |+|||++
T Consensus 2 ~~~~~~~f~w~~~~~-gg~~~gi~~kLdylk~LGvtaI~L~Pi~~~~~~~~~gy~~~~~Y~~~~~~~~~~vd-~~~Gt~~ 79 (393)
T d1e43a2 2 NGTLMQYFEWYTPND-GQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVR-TKYGTKS 79 (393)
T ss_dssp CCCEEECCCTTCCSS-SCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSS-CSSCCHH
T ss_pred CccEEEeEecCCCCC-CCCHHHHHHHHHHHHHcCCCEEEeCcCccCCCCCCCCCCcccCcccccccccCccC-CCCCCHH
Confidence 579999999998876 7899999999999999999999999999864 47787777766 489 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEeeecccCCCCCCCCC------------------c---ceeecCC---CCCCCCCCCC-----
Q 014447 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKDGR------------------G---IYCIFEG---GTSDDRLDWG----- 142 (424)
Q Consensus 92 dl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~------------------~---~~~~~~~---~~~~~~~~w~----- 142 (424)
|||+||++||++||+||+|+|+||||.+|+... . .|..+.. +.+.....|.
T Consensus 80 df~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (393)
T d1e43a2 80 ELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFD 159 (393)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEE
T ss_pred HHHHHHHHHHHcCCEEEEEEeeccccCCCccccccccccCccccccccccccccccccccccCCCCCCCcccccccccCC
Confidence 999999999999999999999999998774100 0 1111111 0111111111
Q ss_pred -----Cc------ccc-cCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHH
Q 014447 143 -----PS------FIC-RGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS 210 (424)
Q Consensus 143 -----~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~ 210 (424)
.. ... .....|............+..+||||++||+|++++++++++|++++||||||+|++++++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~np~v~~~~~~~~~~w~~~~GiDGfR~Da~~~~~~~ 239 (393)
T d1e43a2 160 GADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFS 239 (393)
T ss_dssp EESCBTTTTBCCEEEECSSSCCCCSSSCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCHH
T ss_pred CCCccccCCcCCcccccCcccccccccccccceeccccccccccCChhhhHHHHHHHHhhhhhcCcceEEeeccccCCHH
Confidence 00 000 001112112223444556788999999999999999999999999899999999999999999
Q ss_pred HHHHHHHh----cCC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhc-chhhhh
Q 014447 211 ITKVYMEN----TSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ-GELWRL 284 (424)
Q Consensus 211 ~~~~~~~~----~~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~-~~~~~~ 284 (424)
||++++++ ..+ ++++||.|.. ....+..|........+.|||++...+..++. +....+
T Consensus 240 f~~~~~~~~~~~~~~~~~~~gE~~~~---------------~~~~~~~~~~~~~~~~~~~d~~l~~~~~~a~~~~~~~~l 304 (393)
T d1e43a2 240 FLRDWVQAVRQATGKEMFTVAEYWQN---------------NAGKLENYLNKTSFNQSVFDVPLHFNLQAASSQGGGYDM 304 (393)
T ss_dssp HHHHHHHHHHHHHCSCCEEEECCCCS---------------CHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCG
T ss_pred HHHHHHHHHHHhcCcceEEeeeecCC---------------cHHhhhhhhhccccceeeechHHHHHHHHHHhccchHHH
Confidence 99998543 345 7799999864 25667788877777888899998888877663 333334
Q ss_pred hhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCC-CchhHHHHHHHHHcC-CCeeEEecCCCCCc---------chHH
Q 014447 285 KDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPF-PSDKVMLGYAYILTH-PGTPCIFYDHFFDW---------GLKE 353 (424)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~-~~~~~~~a~a~~l~~-pG~P~iyyG~~~~w---------~l~~ 353 (424)
...... ......+..+++|++|||++|..+.... ...+.++|+++++++ ||+|+||||||++. .+..
T Consensus 305 ~~~~~~--~~~~~~~~~~v~fl~nHD~~R~~~~~~~~~~~~~~la~a~ll~~~pG~P~IyyGdE~G~~g~~~~~~~~~~~ 382 (393)
T d1e43a2 305 RKLLNG--TVVSKHPLKSVTFVDNHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFYGDMYGTKGDSQREIPALKH 382 (393)
T ss_dssp GGTTTT--CSTTTCGGGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCCCCSSTTCCCCCHH
T ss_pred HHHHhh--cccccCccceeEeccCCCCcccccccCchhHHHHHHHHHHHHHcCCCcEEEEhhHhcCCCCCCCCCcHHHHH
Confidence 443321 1222346678999999999999876542 334556787877765 99999999999875 4889
Q ss_pred HHHHHHHHHHh
Q 014447 354 AISKLAAVRNR 364 (424)
Q Consensus 354 ~~~~L~~lR~~ 364 (424)
.|+.|+++||+
T Consensus 383 ~i~~l~~~rk~ 393 (393)
T d1e43a2 383 KIEPILKARKQ 393 (393)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhCc
Confidence 99999999996
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Probab=100.00 E-value=6.8e-58 Score=452.39 Aligned_cols=325 Identities=27% Similarity=0.514 Sum_probs=242.8
Q ss_pred CceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCccccc---------CCCCCCCCCHH
Q 014447 23 PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLY---------DLDASKYGSQA 91 (424)
Q Consensus 23 ~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~---------~id~~~~Gt~e 91 (424)
+.||+|+|.|++..+ ||++++|++||||||+||||+|||+||+++. .++||++.|++ +|| |+|||++
T Consensus 2 ~~~~~q~f~w~~~~~-g~~~~~i~~kLdyL~~LGv~aIwL~Pi~~~~~~~~~gY~~~~~yd~~~~~~~~~vd-~~~Gt~~ 79 (394)
T d2d3na2 2 NGTMMQYFEWYLPND-GNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVR-TKYGTRS 79 (394)
T ss_dssp CCCEEECCCTTCCSS-SCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSS-BTTBCHH
T ss_pred CccEEEEEecccCCC-CCcHHHHHHHHHHHHHcCCCEEEECcCccCCCCCCCCCCcccCcccccccccCCcC-CCCCCHH
Confidence 579999999999976 5899999999999999999999999999864 47888888876 599 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEeeecccCCCCCCCC----------------Ccc-----eeecCC---CCCCCCCC-------
Q 014447 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKDG----------------RGI-----YCIFEG---GTSDDRLD------- 140 (424)
Q Consensus 92 dl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~----------------~~~-----~~~~~~---~~~~~~~~------- 140 (424)
||++||++||++|||||+|+|+||+|..++.. ... |..+.. +.......
T Consensus 80 df~~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (394)
T d2d3na2 80 QLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFD 159 (394)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSEECSCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEE
T ss_pred HHHHHHHHHHHCCCEEEEEEecccccCccccccccccccCcccccccccccccccccccccCccccCCCCccccccccCC
Confidence 99999999999999999999999999765310 000 111111 00000011
Q ss_pred ---CCCcccc--------cCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH
Q 014447 141 ---WGPSFIC--------RGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 209 (424)
Q Consensus 141 ---w~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~ 209 (424)
|.....+ .....|............+..+||||++||+||+++++++++|++++||||||+|+|++++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~~~~~~~~w~~~~giDGfR~D~a~~~~~ 239 (394)
T d2d3na2 160 GVDWDQSRRLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKY 239 (394)
T ss_dssp EESCCTTTCCSSCEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCH
T ss_pred CcccccccCCCCCcceecCCCCccccccccccccccccCCcccccCCHHHHHHHHHhhhhhhcccCcceEEecccccCCh
Confidence 1110000 01112222223444556778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----cCC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc-hhhh
Q 014447 210 SITKVYMEN----TSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWR 283 (424)
Q Consensus 210 ~~~~~~~~~----~~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~-~~~~ 283 (424)
+||++++++ ..| .+++||+|.. ....+..|....+...++|||++...+..++.+ ....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~gE~~~~---------------~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~ 304 (394)
T d2d3na2 240 SFTRDWINHVRSATGKNMFAVAEFWKN---------------DLGAIENYLQKTNWNHSVFDVPLHYNLYNASKSGGNYD 304 (394)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEECCCCS---------------CHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSC
T ss_pred HHHHHHHHHHHHhcCCceeeccccccc---------------ccccccchhccccccceeehHHHHHHHHHHHhcCcchh
Confidence 999998543 335 7899999963 256677887777778889999998888877633 2333
Q ss_pred hhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCc-hhHHHHHHHHHcC-CCeeEEecCCCCCc------chHHHH
Q 014447 284 LKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS-DKVMLGYAYILTH-PGTPCIFYDHFFDW------GLKEAI 355 (424)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~-~~~~~a~a~~l~~-pG~P~iyyG~~~~w------~l~~~~ 355 (424)
+..... .......|.++++|++|||++|..+...... .+.++|++++|++ ||+|+||||||++. +..+-+
T Consensus 305 l~~~~~--~~~~~~~~~~~v~fl~NHD~~r~~~~~~~~~~~~~~la~a~~l~~~pGiP~iyyGdE~G~~~~~~p~~r~~~ 382 (394)
T d2d3na2 305 MRNIFN--GTVVQRHPSHAVTFVDNHDSQPEEALESFVEEWFKPLAYALTLTREQGYPSVFYGDYYGIPTHGVPAMRSKI 382 (394)
T ss_dssp GGGTTT--TCHHHHCGGGEEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCCCHHHH
T ss_pred HHHHHh--ccccccCHhHeeEeCcCCcCccccccccCccHHHHHHHHHHHHHcCCCeEEEEhhHhcCCCCCCCcchHHHH
Confidence 333222 1122234677899999999999877655333 3566788887775 89999999999875 578999
Q ss_pred HHHHHHHHhcC
Q 014447 356 SKLAAVRNRNG 366 (424)
Q Consensus 356 ~~L~~lR~~~~ 366 (424)
+.|+++||+++
T Consensus 383 ~~l~~~r~~~~ 393 (394)
T d2d3na2 383 DPILEARQKYA 393 (394)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhC
Confidence 99999999874
|
| >d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Probab=100.00 E-value=6.3e-59 Score=461.64 Aligned_cols=328 Identities=21% Similarity=0.302 Sum_probs=238.3
Q ss_pred cCCCCCCceEEEeecCCCCCC----------------------CCCcHHHHHhhhh--HHHHcCCCEEEeCCCCCC----
Q 014447 17 FLPFTSPALLFQGFNWESSNK----------------------AGGWYNSLKNSIP--DLSNAGITHVWLPPPSQS---- 68 (424)
Q Consensus 17 ~p~~~~~~v~~~~f~~ds~~~----------------------~~G~~~gi~~~L~--ylk~lGv~~I~l~Pi~~~---- 68 (424)
.+..++.+||||+|. |++.+ .||||+||++||| |||+||||+||||||+++
T Consensus 8 ~~~~~~~~viY~i~~-drF~~g~~~~d~~~~~~~~~~~~~~~~~gGdl~Gi~~kLd~~YLk~LGv~~I~L~Pi~~~~~~~ 86 (406)
T d3bmva4 8 NVVNYSTDVIYQIVT-DRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLTGMGVTAIWIPQPVENIYAV 86 (406)
T ss_dssp CTTCCTTCCEEECCG-GGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHHHHTSTTGGGTCCEEEECCCEEECCCC
T ss_pred CCCCCccCeEEEech-hhccCCCCCCCCCCCccCCCCCccCccCCcCHHHHHHhcCHHHHHHcCCCEEEECCcccccccc
Confidence 355678899999998 65532 2799999999999 999999999999999873
Q ss_pred ---------CCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCc---ceeecCC----
Q 014447 69 ---------VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG---IYCIFEG---- 132 (424)
Q Consensus 69 ---------~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~---~~~~~~~---- 132 (424)
.++|||+++||++|| |+|||++|||+||++||++||+||||+|+||||.+|+.... ....+..
T Consensus 87 ~~~~~~~~~~~~~gY~~~d~~~vd-p~~Gt~~dfk~LV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~ 165 (406)
T d3bmva4 87 LPDSTFGGSTSYHGYWARDFKRTN-PYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLL 165 (406)
T ss_dssp EEETTTEEECSTTSCSEEEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEE
T ss_pred cCCCCCCCChhhcCcccccccccC-cccccHHHHHHHHHHHHhccccceeeeecccccccccchhhhcccCccccCCccc
Confidence 257999999999999 99999999999999999999999999999999988752111 0000111
Q ss_pred -CCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHH
Q 014447 133 -GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSI 211 (424)
Q Consensus 133 -~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~ 211 (424)
........|...+... .|... .......+.++|+||+++|+|++++++++++|++ +||||||+|++++++.+|
T Consensus 166 ~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~~~~-~giDGfR~D~~~~~~~~~ 239 (406)
T d3bmva4 166 GGYTNDTNGYFHHYGGT---DFSSY--EDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWLD-MGIDGIRLDAVKHMPFGW 239 (406)
T ss_dssp ECSTTCTTCCBCCSCBC---CCSSH--HHHHHSBSTTEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEESCGGGSCHHH
T ss_pred cccccccccccccccCc---ccccc--ccccccccccccccccccHHHHHHHHHHHHHHhh-cCCCccccccccccchhh
Confidence 1111112222111111 11100 0111234568999999999999999999999997 999999999999999999
Q ss_pred HHHH---HHhcCCCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch---hhhhh
Q 014447 212 TKVY---MENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLK 285 (424)
Q Consensus 212 ~~~~---~~~~~p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~---~~~~~ 285 (424)
|+++ +++.+|.+.++|.+..... ......+... ....+.+||.+...+...+.+. ...+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~e~~~~~~~-------------~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 305 (406)
T d3bmva4 240 QKNFMDSILSYRPVFTFGEWFLGTNE-------------IDVNNTYFAN-ESGMSLLDFRFSQKVRQVFRDNTDTMYGLD 305 (406)
T ss_dssp HHHHHHHHHHHSCCEEEECCCCCTTC-------------CCHHHHHHHH-HSSSEEBCHHHHHHHHHHHTSCSSCHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccccc-------------cccccccccC-CCccceecchhhHHHHHhhccCcchhHHHH
Confidence 9998 4566888899998864320 1122233332 3456678999888887766432 11111
Q ss_pred hhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCCC--------------c--
Q 014447 286 DSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFD--------------W-- 349 (424)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~~--------------w-- 349 (424)
........ ....+..+++|++|||++|+.+. .+.+++++|++++||+||+|+||||||++ |
T Consensus 306 ~~~~~~~~-~~~~~~~~~~fl~nHD~~R~~~~--~~~~~~~~a~~~~lt~pG~P~IyyGdE~g~~g~~dp~~r~~~~~~~ 382 (406)
T d3bmva4 306 SMIQSTAS-DYNFINDMVTFIDNHDMDRFYNG--GSTRPVEQALAFTLTSRGVPAIYYGTEQYMTGNGDPYNRAMMTSFN 382 (406)
T ss_dssp HHHHHHHH-HCTTGGGCEECSCCSSSCCSCCS--SCSHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCC
T ss_pred HHHhhhcc-cccchhhhcccccCCchhhhccC--CCHHHHHHHHHHHHHhCCCCEEecChhhCcCCCCChhhhhcCCCCC
Confidence 11100000 00113456899999999998765 35678999999999999999999999853 3
Q ss_pred ---chHHHHHHHHHHHHhcCCCC
Q 014447 350 ---GLKEAISKLAAVRNRNGINT 369 (424)
Q Consensus 350 ---~l~~~~~~L~~lR~~~~al~ 369 (424)
+++++||+|++||+++|||+
T Consensus 383 ~~~~~~~~~~~Li~lRk~~paLr 405 (406)
T d3bmva4 383 TSTTAYNVIKKLAPLRKSNPAIA 405 (406)
T ss_dssp TTSHHHHHHHHHTTHHHHCHHHH
T ss_pred CChHHHHHHHHHHHHHhhChhhc
Confidence 48999999999999999985
|
| >d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]
Probab=100.00 E-value=1.2e-58 Score=456.07 Aligned_cols=329 Identities=20% Similarity=0.260 Sum_probs=238.9
Q ss_pred cCCCCCCceEEEeec---CCCCCC------------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--------CCCC
Q 014447 17 FLPFTSPALLFQGFN---WESSNK------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------APQG 73 (424)
Q Consensus 17 ~p~~~~~~v~~~~f~---~ds~~~------------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--------~~~g 73 (424)
+|.-++++||||+|. .++.++ +||||+||+++|||||+||||+||||||+++. .+||
T Consensus 2 ~p~~W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gGd~~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~~~~~~~~g 81 (381)
T d2guya2 2 TPADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHG 81 (381)
T ss_dssp CHHHHTTCCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCTTS
T ss_pred CCccccCCeEEEEEcchhcCCCCCCCCCCCCccCccCCcCHHHHHHhHHHHHHCCCCEEEeCCCCCCCcccCCCCCCCCC
Confidence 344446789999985 133232 25999999999999999999999999999853 4699
Q ss_pred CCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCcc
Q 014447 74 YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEY 153 (424)
Q Consensus 74 Y~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 153 (424)
|++.||++|| |+|||++|||+||++||++||+||+|+|+||+|.+++.....+..+... ...++..... ....|
T Consensus 82 Y~~~d~~~vd-~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~ 155 (381)
T d2guya2 82 YWQQDIYSLN-ENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPF---SSQDYFHPFC--FIQNY 155 (381)
T ss_dssp CSEEEEEEEC-TTSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSC---CSGGGBCCSC--BCCCT
T ss_pred cccccccccc-cCCCCHHHHHHHHHHHHhhccceeeeccccccccccCcccccccccCCC---Ccccceeccc--ccccc
Confidence 9999999999 9999999999999999999999999999999998886433333222210 0011110000 00011
Q ss_pred CC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEeeecCC
Q 014447 154 SD--GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDS 231 (424)
Q Consensus 154 ~~--~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~v~E~~~~ 231 (424)
.+ ...++..+.+...+|+||++||+||+++++++++|+.++||||||+|+|++++.+||+.+.+.. ..+++||++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~~~~giDGfR~D~~~~~~~~f~~~~~~~~-~~~~igE~~~~ 234 (381)
T d2guya2 156 EDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAA-GVYCIGEVLDG 234 (381)
T ss_dssp TCHHHHHHSBEECSSEEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCGGGHHHHHHHH-TSEEEECCCCS
T ss_pred ccccccceeeccCCccccchhccccHHHHHHHHHHhhhccccccccceeeehHhhcCHHHHHhhhhcc-eeeeeeecccc
Confidence 11 0112233445678999999999999999999999988899999999999999999999986643 37799999853
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch---hhhhhhhcCCCCCCcCcCCCcceecccC
Q 014447 232 LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLKDSNGKPPGFIGILPQNAVTFIDN 308 (424)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~f~~n 308 (424)
. ......+ .....+.++|.+...+..++.+. ...+.......... ...+...++|++|
T Consensus 235 ~---------------~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~en 295 (381)
T d2guya2 235 D---------------PAYTCPY---QNVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKSD-CPDSTLLGTFVEN 295 (381)
T ss_dssp C---------------HHHHGGG---GGTSSEEBCHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHH-SSCGGGSEECSCC
T ss_pred c---------------Hhhhccc---cccccceecchhHHHHHHHHhccCCchHHHHHHHHHHHhh-cCccccceeeccC
Confidence 1 1211111 23467788998887777766432 22222111000000 0012345789999
Q ss_pred CCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCCC--------------c-------chHHHHHHHHHHHHhcCC
Q 014447 309 HDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFD--------------W-------GLKEAISKLAAVRNRNGI 367 (424)
Q Consensus 309 HD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~~--------------w-------~l~~~~~~L~~lR~~~~a 367 (424)
||++|+.+... +.++.++|+++++|+||+|+||||||++ | ++.++||+|++|||+..+
T Consensus 296 HD~~R~~s~~~-~~~~~~~a~~~l~t~pGiP~iy~G~E~g~~g~~~~~~r~~~~~~~~~~~~~l~~~i~~L~~lR~~~~~ 374 (381)
T d2guya2 296 HDNPRFASYTN-DIALAKNVAAFIILNDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASANAIRNYAIS 374 (381)
T ss_dssp TTSCCGGGTCC-CHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTTTCCCGGGGTCCTTSHHHHHHHHHHHHHHHHHH
T ss_pred cCccccccccC-CHHHHHHHHHHHHHcCCCcEEEcccccCcCCCCCcchhcccccccCcCCHHHHHHHHHHHHHHhHHhh
Confidence 99999988765 6778999999999999999999999852 2 389999999999999877
Q ss_pred CCCCC
Q 014447 368 NTASR 372 (424)
Q Consensus 368 l~~G~ 372 (424)
++.|.
T Consensus 375 ~~~~~ 379 (381)
T d2guya2 375 KDTGF 379 (381)
T ss_dssp HCTTT
T ss_pred ccCCC
Confidence 77764
|
| >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 4-alpha-glucanotransferase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.8e-57 Score=447.13 Aligned_cols=314 Identities=24% Similarity=0.369 Sum_probs=230.7
Q ss_pred eEEEeec---CCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHH
Q 014447 25 LLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101 (424)
Q Consensus 25 v~~~~f~---~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH 101 (424)
|+||+|. -|+.+++.|||+||++||||||+|||++|||+||+++.++|||+++||++|| |+|||++||++||++||
T Consensus 2 v~Yei~~~~F~d~~~dg~Gd~~gi~~kLdyl~~LGv~~I~l~Pi~~~~~~~GY~~~d~~~vd-~~~Gt~~d~~~lv~~~h 80 (391)
T d1lwha2 2 IGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFK-AEYGSEREFKEMIEAFH 80 (391)
T ss_dssp CEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHTTCSEEEECCCEECSSSSCCSCSEEEEEC-GGGCCHHHHHHHHHHHH
T ss_pred EEEEEccccccCCCCCCccCHHHHHHhhHHHHHcCCCEEEECCCCCCCCCCCCCccCCCCcC-cccCCHHHHHHHHHHHH
Confidence 5677764 1666678899999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HcCCEEEEeeecccCCCCCCCC------C---cceeecCCCC--CCCCCCCCCcccccCCCcc-CCCCCCCCCCCCCCCC
Q 014447 102 QKGIKCLADMVINHRTAERKDG------R---GIYCIFEGGT--SDDRLDWGPSFICRGDKEY-SDGQGNDDTGEDFQPA 169 (424)
Q Consensus 102 ~~Gi~VilD~v~NH~~~~~~~~------~---~~~~~~~~~~--~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 169 (424)
++||+||+|+|+||++.+|+.. . .+++.+.+.. ......|... ..| ....+.+..+.+...+
T Consensus 81 ~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 154 (391)
T d1lwha2 81 DSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGE------KIWHPLEDGRFYRGLFGPFS 154 (391)
T ss_dssp HTTCEEEEEECTTBCCTTSHHHHHHHTTCHHHHTTBCBCCTTCCTTCBCSSSCC------BCEEECTTSCEEECTTCTTS
T ss_pred hcCCEEeecccccccccccccccccccCCccccccceecCCccccCccccCCCC------ccccccCCCcccccccCCcC
Confidence 9999999999999999887410 0 1122222110 0111111110 111 1123455566778899
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH------HHHHHHHHhcCCCeEEeeecCCCCCCCCCCCCCC
Q 014447 170 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP------SITKVYMENTSPDFAVGEKWDSLSYGPDGKPDAN 243 (424)
Q Consensus 170 ~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~------~~~~~~~~~~~p~~~v~E~~~~~~~~~~~~~~~~ 243 (424)
||||++||+||++|++++++|++ +||||||+|+|++++. .+|+++.++.+ .+.++|.+....
T Consensus 155 pdln~~n~~v~~~i~~~~~~w~e-~gvDGfR~Daa~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~---------- 222 (391)
T d1lwha2 155 PDLNYDNPQVFDEMKRLVLHLLD-MGVDGFRFDAAKHMRDTIEQNVRFWKYFLSDLK-GIFLAEIWAEAR---------- 222 (391)
T ss_dssp CBBCTTSHHHHHHHHHHHHHHHH-HTCCEEEETTGGGSSSSHHHHHHHHHHHHTTCC-SEEEECCCSCSS----------
T ss_pred CccccccchhhHHHHHHHHHHhh-cCCCcceechHHHHHHhhhhhhHHHHHHHHHhh-hhhhhhhhcccc----------
Confidence 99999999999999999999997 9999999999999985 45566555443 578899886422
Q ss_pred CCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc-hhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCC-CC
Q 014447 244 QDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP-FP 321 (424)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~-~~ 321 (424)
....+. ..+...++|.+...+..++.+ ....+........ .......++|++|||+.|..+... .+
T Consensus 223 ------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~f~~nhD~~~~~~~~~~~~ 290 (391)
T d1lwha2 223 ------MVDEHG---RIFGYMLNFDTSHCIKEAVWKENTRVLIESIERAV---IAKDYLPVNFTSNHDMSRLASFEGGFS 290 (391)
T ss_dssp ------SHHHHH---HHHEEEECHHHHHHHHHHHHHTCTHHHHHHHHHHT---SSCSSEEEEESCCTTSCCGGGGGGCCC
T ss_pred ------eeeccc---cccCceecccHHHHHHHHHhhccHHHHHHHHHhhc---ccCCcccccccccccccccccccccch
Confidence 011111 124556788877777765532 2222222111000 011234589999999999877654 35
Q ss_pred chhHHHHHHHHHcCCCeeEEecCCCC------------------Cc----------------------------------
Q 014447 322 SDKVMLGYAYILTHPGTPCIFYDHFF------------------DW---------------------------------- 349 (424)
Q Consensus 322 ~~~~~~a~a~~l~~pG~P~iyyG~~~------------------~w---------------------------------- 349 (424)
.+++++|++++||+||+|+||||||+ +|
T Consensus 291 ~~~~~~a~~lllt~pG~P~IyyGdE~G~~~~~~~~~~~~~r~pm~W~~~~~~~~~~~~~~~~~~~~~~~~nve~q~~~~~ 370 (391)
T d1lwha2 291 KEKIKLSISILFTLPGVPLVFYGDELGMKGVYQKPNTEVVLDPFPWNESMCVEGQTFWKWPAYNGPFSGISVEYQKRDPD 370 (391)
T ss_dssp HHHHHHHHHHHTTSSSEEEEETTGGGTCCCCCCSSCGGGGSCCCCSSTTSCSTTCCCSSCCSSCCSSSSCSHHHHTTCTT
T ss_pred hhHHHHHHHHhhcCCCCCEEecchhcCCcCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcCCCCcccccCHHHHHhCch
Confidence 67899999999999999999999974 35
Q ss_pred chHHHHHHHHHHHHhcCCCC
Q 014447 350 GLKEAISKLAAVRNRNGINT 369 (424)
Q Consensus 350 ~l~~~~~~L~~lR~~~~al~ 369 (424)
++++++|+|++|||+||||.
T Consensus 371 s~~~~~~~Li~lRk~~~al~ 390 (391)
T d1lwha2 371 SILSHTLGWTRFRKENQWID 390 (391)
T ss_dssp SHHHHHHHHHHHHHTCGGGG
T ss_pred HHHHHHHHHHHHHhhChhhc
Confidence 18899999999999999985
|
| >d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Halothermothrix orenii [TaxId: 31909]
Probab=100.00 E-value=2.4e-57 Score=449.20 Aligned_cols=319 Identities=23% Similarity=0.391 Sum_probs=238.3
Q ss_pred CCCCceEEEeec---CCCCCCCCCcHHHHHhhhhHH--------HHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCC
Q 014447 20 FTSPALLFQGFN---WESSNKAGGWYNSLKNSIPDL--------SNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG 88 (424)
Q Consensus 20 ~~~~~v~~~~f~---~ds~~~~~G~~~gi~~~L~yl--------k~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G 88 (424)
|-+..|+||+|. -|+.+++.|||+||++||||| |+||||+||||||++++++|||++.||++|| |+||
T Consensus 1 ~~k~~v~Y~~~~~~f~d~~~~~~Gd~~g~~~kLdyl~~~~~~~i~~LGv~~i~l~Pi~~~~~~~GY~~~d~~~vd-~~~G 79 (409)
T d1wzaa2 1 FEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKIN-PDYG 79 (409)
T ss_dssp CCCCCCEEEECGGGSCCSSSSSCCCHHHHHHTHHHHCCSCTTCCSSCCCSEEEECCCEECSSSSCCSCSEEEEEC-GGGC
T ss_pred CCCccEEEEEecchhcCCCCCCCcCHHHHHHhccccccccccHHhhcCccEEEECCCCCCCCCCCcCcccCCCcC-cccC
Confidence 457789999974 155666789999999999998 7999999999999999999999999999999 9999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCC----------CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~----------~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 158 (424)
|.+|||+||++||++||+||+|+|+||++.+|+. ....|+.+.+...... + ........|.....
T Consensus 80 ~~~dlk~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~ 154 (409)
T d1wzaa2 80 TLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTK--E---TKLDGGRVWHYSPT 154 (409)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCCCCC--B---CSSSCBCSEEEETT
T ss_pred CHHHHHHHHHHHHhcCCEEEEecccccccccCcchhhhhccccccccccccccccccccC--c---cccCCCcccccccc
Confidence 9999999999999999999999999999998841 1223333332111000 0 00001111111223
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH--------HHHHHHH---HhcCCCeEEee
Q 014447 159 NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP--------SITKVYM---ENTSPDFAVGE 227 (424)
Q Consensus 159 ~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~--------~~~~~~~---~~~~p~~~v~E 227 (424)
....+.++.+++|||++||+||+++++++++|++ .||||||+|+++++.+ .+|+++. ++.+|.++++|
T Consensus 155 ~~~~~~~~~~~~dln~~n~~vr~~~~~~~~~wi~-~gVDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 233 (409)
T d1wzaa2 155 GMYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLK-QGVDGFRLDGAMHIFPPAQYDKNFTWWEKFRQEIEEVKPVYLVGE 233 (409)
T ss_dssp EEEECSSCTTSCBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEEECCCTTSCGGGTTHHHHHHHHHHHHHTTTSCCEEEEE
T ss_pred ccccccCCCCCcccccccHHHHHHHHHHHHHHHH-cCCCeecccchhhcccchhccchhHHHHHHHHhhccCCCcEEEEE
Confidence 3445667899999999999999999999999998 7999999999999843 4777774 44567889999
Q ss_pred ecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch-----------hhhhhhhcCCCCCCcC
Q 014447 228 KWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE-----------LWRLKDSNGKPPGFIG 296 (424)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 296 (424)
++.. .+.+..+.. .+....+++.+...+....... ..........
T Consensus 234 ~~~~----------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 289 (409)
T d1wzaa2 234 VWDI----------------SETVAPYFK--YGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVG------ 289 (409)
T ss_dssp CCSC----------------HHHHGGGGT--TTCSEEBCHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHTC------
T ss_pred eecC----------------ccchhhhhh--cccccchhhhHHHHHHHHHhccCccchHHHHHHHHHhhhhhhc------
Confidence 9863 222333332 4677778887766655543211 0111111110
Q ss_pred cCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC---------------Cc------------
Q 014447 297 ILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF---------------DW------------ 349 (424)
Q Consensus 297 ~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~---------------~w------------ 349 (424)
..+...++|++|||++|..+..+.+.++++++++++||+||+|+||||||+ .|
T Consensus 290 ~~~~~~~~f~~nhD~~r~~~~~~~~~~~~~~~~~~~lt~pG~P~iy~G~E~G~~~~~~~~~~R~p~~w~~~~~~~~~~~~ 369 (409)
T d1wzaa2 290 FGNYIDAPFLTNHDQNRILDQLGQDRNKARVAASIYLTLPGNPFIYYGEEIGMRGQGPHEVIREPFQWYNGSGEGETYWE 369 (409)
T ss_dssp TTSCCCBCBSCCTTSCCHHHHTTTCHHHHHHHHHHHTTSSSCCEEETTGGGTCCCCSSHHHHTCCCCCSSSCCTTCCCSS
T ss_pred cccccccccccccccCccccccCCchHHHHHHHHHHHhCCCCCEEecChhhCccCCCCCccccCCCCCCCCCCCCCCcCC
Confidence 112234789999999999888776788999999999999999999999975 24
Q ss_pred -------------------chHHHHHHHHHHHHhcCCCC
Q 014447 350 -------------------GLKEAISKLAAVRNRNGINT 369 (424)
Q Consensus 350 -------------------~l~~~~~~L~~lR~~~~al~ 369 (424)
++++++|+|++|||++|||+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~s~~~~~~~Li~lRk~~pal~ 408 (409)
T d1wzaa2 370 PAMYNDGFTSVEQEEKNLDSLLNHYRRLIHFRNENPVFY 408 (409)
T ss_dssp CCTTTTTTCCHHHHTTCTTSHHHHHHHHHHHHHHCTHHH
T ss_pred cccccccccCHHHHhhCcHHHHHHHHHHHHHHhhCchhc
Confidence 17899999999999999986
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=4.8e-56 Score=438.99 Aligned_cols=324 Identities=28% Similarity=0.483 Sum_probs=238.6
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCccccc---------CCCCCCCCCH
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLY---------DLDASKYGSQ 90 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~---------~id~~~~Gt~ 90 (424)
-+.||+|.|.|++..+ +|++++|++||+|||+||||+|||+||++++ .++||++.||+ .|| |+|||+
T Consensus 4 ~~~~~~~~f~w~~~~~-~~~~~~i~~kLdyLk~LGv~aI~L~Pi~~~~~~~~~GY~~~d~y~~~~~~~~~~vd-~~~Gt~ 81 (393)
T d1hvxa2 4 FNGTMMQYFEWYLPDD-GTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVR-TKYGTK 81 (393)
T ss_dssp CCCCEEECCCTTCCSS-SCHHHHHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSS-CSSCCH
T ss_pred CCceEEEeEeeccCCC-CChHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCccCccccccccccCCcC-CCCCCH
Confidence 3579999999998754 7899999999999999999999999999865 47999999997 599 999999
Q ss_pred HHHHHHHHHHHHcCCEEEEeeecccCCCCCCC----------------CCcc-----eeecCC---CCCCCCCCCCCcc-
Q 014447 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERKD----------------GRGI-----YCIFEG---GTSDDRLDWGPSF- 145 (424)
Q Consensus 91 edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~----------------~~~~-----~~~~~~---~~~~~~~~w~~~~- 145 (424)
+||++||++||++|||||||+|+||++..... ..+. |..+.. +.......|....
T Consensus 82 ~df~~LV~~aH~~GIkVIlDvV~NHt~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (393)
T d1hvxa2 82 AQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYHF 161 (393)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGE
T ss_pred HHHHHHHHHHHHCCCEEEEEEecccccccCCccceeecccCccccccccCCCcccccccccCCCCCCCCCCCcccccccC
Confidence 99999999999999999999999999753210 0000 111110 0011111111000
Q ss_pred ----------------cccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH
Q 014447 146 ----------------ICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 209 (424)
Q Consensus 146 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~ 209 (424)
.......|............+..+||||++||+|+++|++++++|++++||||||+|+|++++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~giDGfR~D~a~~i~~ 241 (393)
T d1hvxa2 162 DGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIKF 241 (393)
T ss_dssp EEEEEETTTTEEEEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSCT
T ss_pred CCCcccccCCcCccccccCCcCccccccccccceeeccccceeccCChHHHHHHHHHHHHHHHhhCCceeeeeccccCCh
Confidence 0011112222223344455678899999999999999999999999989999999999999999
Q ss_pred HHHHHHHHh----c-CCCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc-hhhh
Q 014447 210 SITKVYMEN----T-SPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWR 283 (424)
Q Consensus 210 ~~~~~~~~~----~-~p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~-~~~~ 283 (424)
+||+++++. . ++.+++||+|.. ....+..|....++..+.|||++...+..++.. ....
T Consensus 242 ~f~~~~~~~~~~~~~~~~~~~gE~~~~---------------~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~ 306 (393)
T d1hvxa2 242 SFFPDWLSYVRSQTGKPLFTVGEYWSY---------------DINKLHNYIMKTNGTMSLFDAPLHNKFYTASKSGGTFD 306 (393)
T ss_dssp THHHHHHHHHHHHHCCCCEEEECCCCS---------------CHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSC
T ss_pred hHHHHHHHHHHHhcCCcceeeeeccCc---------------cHHHHHHHhhccccccchhhHHHHHHHHHHHccCCHHH
Confidence 999987443 2 347899999863 256677888877788899999998887776532 2223
Q ss_pred hhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCC-CCchhHHHHHHHHHc-CCCeeEEecCCCCCc------chHHHH
Q 014447 284 LKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP-FPSDKVMLGYAYILT-HPGTPCIFYDHFFDW------GLKEAI 355 (424)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~-~~~~~~~~a~a~~l~-~pG~P~iyyG~~~~w------~l~~~~ 355 (424)
+..... .......+.++++|++|||+.|..+... .+..+.++|+|++|+ +||+|+||||||++. +..+.+
T Consensus 307 ~~~~~~--~~~~~~~~~~~v~fl~NHD~~r~~~~~~~~~~~~~~~a~a~~l~~~pGiP~iyyGdE~G~~~~~~p~~~~~i 384 (393)
T d1hvxa2 307 MRTLMT--NTLMKDQPTLAVTFVDNHDTEPGQALQSWVDPWFKPLAYAFILTRQEGYPCVFYGDYYGIPQYNIPSLKSKI 384 (393)
T ss_dssp GGGTTT--TCHHHHCGGGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCBGGGTBCCCHHHH
T ss_pred HHHHHH--hhhccCCcccEeEECcCCCCccccccccCCCHHHHHHHHHHHHHhCCCeEEEEhhHhcCCCCcCCCChHHHh
Confidence 332222 1122223567799999999999877654 234566778777665 599999999999875 578999
Q ss_pred HHHHHHHHh
Q 014447 356 SKLAAVRNR 364 (424)
Q Consensus 356 ~~L~~lR~~ 364 (424)
..|+++||.
T Consensus 385 ~~~~~~rk~ 393 (393)
T d1hvxa2 385 DPLLIARRD 393 (393)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHcCC
Confidence 999999984
|
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Probab=100.00 E-value=1.1e-55 Score=446.95 Aligned_cols=312 Identities=18% Similarity=0.265 Sum_probs=213.2
Q ss_pred cCCCCCCceEEEeec---CCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccccCCCCCCCCCHHH
Q 014447 17 FLPFTSPALLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQAD 92 (424)
Q Consensus 17 ~p~~~~~~v~~~~f~---~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~ed 92 (424)
.|+|+++.||||+|. -|+.++++|||+||++||||||+||||+||||||++++ ++|||++.||++|| |+|||++|
T Consensus 2 ~P~W~~~~viYei~~~~F~d~~~~~~Gd~~Gi~~kLdyLk~LGv~~I~L~Pi~~~~~~~~GY~~~d~~~vd-~~~Gt~~d 80 (478)
T d1m53a2 2 YPAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIM-KEYGTMED 80 (478)
T ss_dssp CCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEEC-GGGCCHHH
T ss_pred CCcccccCeEEEEecchhcCCCCCCccCHHHHHHhhHHHHHcCCCEEEECCCCCCCCCCCCcCccCCCCcC-cccCCHHH
Confidence 399999999999996 24555678999999999999999999999999999986 57999999999999 99999999
Q ss_pred HHHHHHHHHHcCCEEEEeeecccCCCCCC----------CCCcceeecCCCCCCCC-CCCCCcccccCCCccCCCCCCCC
Q 014447 93 LKSLIQAFRQKGIKCLADMVINHRTAERK----------DGRGIYCIFEGGTSDDR-LDWGPSFICRGDKEYSDGQGNDD 161 (424)
Q Consensus 93 l~~Lv~~aH~~Gi~VilD~v~NH~~~~~~----------~~~~~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~ 161 (424)
||+||++||++||+||||+|+||++.+|+ .+...++.+.++....+ ..|...+ ......+....+.+.
T Consensus 81 f~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 159 (478)
T d1m53a2 81 FDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFF-GGSAWQKDAKSGQYY 159 (478)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHCTTCTTGGGBCEECCSSSSCSSCCBCTT-SSBSEEECTTTCCEE
T ss_pred HHHHHHHHHHCCCEEEeccccccccccCchhhhcccCCCCCccccccccCCCcCCCCccccccC-CCCccccccccCccc
Confidence 99999999999999999999999998874 11222333333322211 1221111 111222333445666
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH--------------------------HHHHHH
Q 014447 162 TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP--------------------------SITKVY 215 (424)
Q Consensus 162 ~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~--------------------------~~~~~~ 215 (424)
.+.+...+|++|+++|+|+++|++++++|++ +||||||+|+++++.. .+++++
T Consensus 160 ~~~~~~~~~dln~~~~~V~~~i~~~~~~w~e-~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (478)
T d1m53a2 160 LHYFARQQPDLNWDNPKVREDLYAMLRFWLD-KGVSGMRFDTVATYSKIPGFPNLTPEQQKNFAEQYTMGPNIHRYIQEM 238 (478)
T ss_dssp ECSSCTTCCBBCTTSHHHHHHHHHHHHHHHT-TTCCEEEETTGGGSSCCTTCCCCCHHHHHTHHHHTTCCTTHHHHHHHH
T ss_pred ccCcCCCCCcccchhHHHHHHHHHHHHHHHh-cCCceeccccceeecccccccccchhhhhccchhhccchhHHHHHHHH
Confidence 6778899999999999999999999999996 9999999999987742 233333
Q ss_pred HHh---cCCCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHh-cCCceeeecccchHHHHHHh---c---chhhhhh
Q 014447 216 MEN---TSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGILQAAV---Q---GELWRLK 285 (424)
Q Consensus 216 ~~~---~~p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~df~~~~~~~~~~---~---~~~~~~~ 285 (424)
.+. ..+.++++|.+... ......|... .......++|.+........ . .....+.
T Consensus 239 ~~~~~~~~~~~~~~e~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (478)
T d1m53a2 239 NRKVLSRYDVATAGEIFGVP---------------LDRSSQFFDRRRHELNMAFMFDLIRLDRDSNERWRHKSWSLSQFR 303 (478)
T ss_dssp HHHTGGGSCCEEEEECTTCC---------------GGGTHHHHCGGGCSCSEEECCTTTTTTBCSSCTTCBCCCCHHHHH
T ss_pred HHHHhhccccceeeeecCCC---------------HHHHHhhhcccCCccccccchhhhhhhhhhhhhhccccccHHHHH
Confidence 222 23477999988642 1223334332 22344455554322111000 0 0001111
Q ss_pred hhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCC-----chhHHHHHHHHHcCCCeeEEecCCCC
Q 014447 286 DSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP-----SDKVMLGYAYILTHPGTPCIFYDHFF 347 (424)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~-----~~~~~~a~a~~l~~pG~P~iyyG~~~ 347 (424)
........... .......+++|||+.|..+..+.. .++.++|++++||+||+|+||||||+
T Consensus 304 ~~~~~~~~~~~-~~~~~~~~~~nhd~~R~~~~~~~~~~~~~~~~~~~~~~lllt~pGiP~iyyGdEi 369 (478)
T d1m53a2 304 QIISKMDVTVG-KYGWNTFFLDNHDNPRAVSHFGDDRPQWREASAKALATITLTQRATPFIYQGSEL 369 (478)
T ss_dssp HHHHHHHHHHT-TTCCBEECSCCTTSCCHHHHHSCCSTTTHHHHHHHHHHHHTSSSSEEEEETTTTT
T ss_pred HHHHHHHhhhc-ccccceeeccCCCCcccccccCCchHHHHHHHHHHHHHHHHhCCCCCEEeccccc
Confidence 00000000000 122346799999999987655422 24577889999999999999999865
|
| >d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]
Probab=100.00 E-value=6.3e-57 Score=450.38 Aligned_cols=335 Identities=17% Similarity=0.269 Sum_probs=225.6
Q ss_pred cCCCCCCceEEEeecCCCCCC----------------------------------------CCCcHHHHHhhhhHHHH-c
Q 014447 17 FLPFTSPALLFQGFNWESSNK----------------------------------------AGGWYNSLKNSIPDLSN-A 55 (424)
Q Consensus 17 ~p~~~~~~v~~~~f~~ds~~~----------------------------------------~~G~~~gi~~~L~ylk~-l 55 (424)
+|.|++.+|+||+|. |++.+ .||||+||++||||||+ |
T Consensus 4 ~p~W~~~~viY~i~~-drF~dgd~~nd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGdl~Gi~~kLdYl~~~L 82 (432)
T d1ji1a3 4 TPDWLKNGVMYQIFP-DRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFGGDLAGIDQKLGYIKKTL 82 (432)
T ss_dssp CCHHHHHCCEEEECG-GGTCCSCGGGCCCTTSCEETTEECEECCTTSCCSCCTTSCGGGEECCCCHHHHHHTHHHHHTTT
T ss_pred CCccccCCeEEEEec-cccCCCCCccccccccccccCCccccccccccccccccccccccccCcCHHHHHHHhhHHHhhc
Confidence 699999999999997 65542 26999999999999986 9
Q ss_pred CCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcC----CEEEEeeecccCCCCCCCCCc--ceee
Q 014447 56 GITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKG----IKCLADMVINHRTAERKDGRG--IYCI 129 (424)
Q Consensus 56 Gv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~G----i~VilD~v~NH~~~~~~~~~~--~~~~ 129 (424)
|||+||||||++++.+|||++.||++|| |+|||++||++||++||++| |+||||+|+||+|.+|+.... ++..
T Consensus 83 Gv~~I~L~Pi~~~~~~~GY~~~d~~~id-~~~Gt~~d~~~lv~~~H~~g~~~~I~VilD~V~NH~s~~~~~~~~~~~~~~ 161 (432)
T d1ji1a3 83 GANILYLNPIFKAPTNHKYDTQDYMAVD-PAFGDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGDSHPWFDKYNNFSS 161 (432)
T ss_dssp CCCEEEESCCEECSSSSCCSCSEEEEEC-TTTCCHHHHHHHHHHHHCSSSSSCCEEEEEECCSBCCTTSTTTCTTCCSSS
T ss_pred CCCEEEeCCCCcCCCCCCcccccccccC-cccCCHHHHHHHHHHHHHhhhhcceeEeccccccccCCCchhHhhccCccc
Confidence 9999999999999999999999999999 99999999999999999987 789999999999999863211 1100
Q ss_pred cCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCH--HHHHHHHH----HHHHH-HHhcCCCeEEec
Q 014447 130 FEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP--RVQKELSD----WMNWL-KTEIGFDGWRFD 202 (424)
Q Consensus 130 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np--~v~~~l~~----~~~~w-~~~~gvDGfR~D 202 (424)
.. ........|.... .+..+...+....++..+|++|+.|+ .|++++.+ ++++| .+++||||||+|
T Consensus 162 ~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ln~~n~~~~v~~~~~~~~~~~~~~wl~~~~gvDGfR~D 234 (432)
T d1ji1a3 162 QG-AYESQSSPWYNYY------TFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRLD 234 (432)
T ss_dssp CC-TTTCTTCTTGGGB------CEEETTTEECEETTEEEEEBBBCCSTTCHHHHHHTTSTTSHHHHHHSTTTCCCEEEET
T ss_pred cc-ccccccccccccc------cccccccccccccccCccCccccCCCcHHHHHHHHHHHHHHHHHhhhhhcCccceeee
Confidence 00 0000011111110 11112233444556788899999984 57766665 45555 467999999999
Q ss_pred ccCCCCH-----------HHHHHH---HHhcCC-CeEEeeecCCCC-CCCC---CCCCCCCCCchhHHHHHHHhcCCcee
Q 014447 203 FVKGYAP-----------SITKVY---MENTSP-DFAVGEKWDSLS-YGPD---GKPDANQDGHRGALKDWVQAAGGAVA 263 (424)
Q Consensus 203 ~a~~~~~-----------~~~~~~---~~~~~p-~~~v~E~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (424)
++++++. ++|+++ +++.+| .+++||.+.... +... .....+...+...+..++........
T Consensus 235 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (432)
T d1ji1a3 235 AAQYVDANGNNGSDVTNHQIWSEFRNAVKGVNSNAAIIGEYWGNANPWTAQGNQWDAATNFDGFTQPVSEWITGKDYQNN 314 (432)
T ss_dssp TGGGCBSTTCCCSSHHHHHHHHHHHHHHHHHCTTCEEEECCSSCCGGGTTTSSSCSEEBCTTTTHHHHHHHHTSBCTTSC
T ss_pred ceeeeccCCCCcccccchhHHHHHHHHHHhhCCCeEEEeeeccCccceeccccccchhhhhhhhhHHHHHHhhcchhhcc
Confidence 9999854 578777 445567 779999986432 1100 00000111112222222221110000
Q ss_pred eecccchHHHHHHhcchhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEec
Q 014447 264 AFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFY 343 (424)
Q Consensus 264 ~~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyy 343 (424)
..... ...+... +.......+. ..+...++|++|||+.|+.+..+.+..+.++|++++||+||+|+|||
T Consensus 315 ~~~~~-~~~~~~~-------~~~~~~~~~~---~~~~~~~~f~~nHD~~R~~s~~~~~~~~~~~a~~~llt~pG~P~iyy 383 (432)
T d1ji1a3 315 SASIS-TTQFDSW-------LRGTRANYPT---NVQQSMMNFLSNHDITRFATRSGGDLWKTYLALIFQMTYVGTPTIYY 383 (432)
T ss_dssp BCCCC-HHHHHHH-------HHHHHTTSCH---HHHTTCEEESCCTTSCCHHHHTTTCHHHHHHHHHHHTTSSSEEEEET
T ss_pred ccccc-HHHHHHH-------HHHhHhhccc---ccccccccccccCCccchhhhcCCHHHHHHHHHHHHHHcCCCcEEEc
Confidence 00000 0000000 0000000000 01234589999999999988877667789999999999999999999
Q ss_pred CCCC--------------Cc-------chHHHHHHHHHHHHhcCCCCCC
Q 014447 344 DHFF--------------DW-------GLKEAISKLAAVRNRNGINTAS 371 (424)
Q Consensus 344 G~~~--------------~w-------~l~~~~~~L~~lR~~~~al~~G 371 (424)
|||+ +| +++++||+|++||+++|+|+.|
T Consensus 384 GdE~G~~g~~d~~~R~~~~W~~~~~~~~l~~~~~~L~~lR~~~paL~~G 432 (432)
T d1ji1a3 384 GDEYGMQGGADPDNRRSFDWSQATPSNSAVALTQKLITIRNQYPALRTG 432 (432)
T ss_dssp TGGGTCCCCSTTGGGCCCCTTSSSTTSHHHHHHHHHHHHHHHCHHHHHS
T ss_pred CHhhCCCCCCCcccccCCCCCcCCCchHHHHHHHHHHHHHhcCHHhhCC
Confidence 9974 35 4899999999999999999876
|
| >d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Oligo-1,6, glucosidase species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=1.9e-54 Score=437.80 Aligned_cols=311 Identities=18% Similarity=0.259 Sum_probs=209.8
Q ss_pred CCCCCCceEEEeec---CCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccccCCCCCCCCCHHHH
Q 014447 18 LPFTSPALLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQADL 93 (424)
Q Consensus 18 p~~~~~~v~~~~f~---~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~edl 93 (424)
+.|+++.||||+|. -|+.++++|||+||++||||||+||||+||||||++++. +|||+++||++|| |+|||++||
T Consensus 3 ~~W~~~~viYei~~~~F~d~~~~~~Gd~~gi~~kLdYLk~LGv~~I~l~Pi~~~~~~~~GY~~~d~~~vd-~~~Gt~~df 81 (479)
T d1uoka2 3 KQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIM-NEFGTMEDW 81 (479)
T ss_dssp CCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHTTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEEC-GGGCCHHHH
T ss_pred chhhccCeEEEEEcchhcCCCCCCCcCHHHHHHhhHHHHHcCCCEEEECCCcCCCCCCCCcCccccCCcC-cccCCHHHH
Confidence 68999999999996 145556789999999999999999999999999999865 7999999999999 999999999
Q ss_pred HHHHHHHHHcCCEEEEeeecccCCCCCCC----------CCcceeecCCC-CCCCCCCCCCcccccCCCccCCCCCCCCC
Q 014447 94 KSLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGG-TSDDRLDWGPSFICRGDKEYSDGQGNDDT 162 (424)
Q Consensus 94 ~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~----------~~~~~~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 162 (424)
|+||++||++||+||||+|+||+|.+|+. ....++.+..+ ....+..|...+. .....+.+..+.+..
T Consensus 82 ~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 160 (479)
T d1uoka2 82 DELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFS-GSAWQYDEMTDEYYL 160 (479)
T ss_dssp HHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCSSSSCSSCBBCTTS-SBSEEEETTTTEEEE
T ss_pred HHHHHHHHHCCCEEEecccccccccccchhhhhhhccCCccccceeccccccCcCcCCccccCC-CCccccccccCccee
Confidence 99999999999999999999999998741 11122222221 1112222222221 111222233445556
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH----------------------------HHHHH
Q 014447 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP----------------------------SITKV 214 (424)
Q Consensus 163 ~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~----------------------------~~~~~ 214 (424)
..+...+|+||+++|+||++|++++++|++ +||||||+|+++++.. .++++
T Consensus 161 ~~~~~~~~dln~~~~~v~~~i~~~~~~W~e-~gvDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (479)
T d1uoka2 161 HLFSKKQPDLNWDNEKVRQDVYEMMKFWLE-KGIDGFRMDVINFISKEEGLPTVETEEEGYVSGHKHFMNGPNIHKYLHE 239 (479)
T ss_dssp CSSCTTSCBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCCCTTCCCCCCCCSSCBCCGGGTTTCTTHHHHHHH
T ss_pred cccCCCccccccCCHHHHHHHHHHHHHHHH-cCCCCcccccceeeeccccCcccccccccccccchhhccChhHHHHHHH
Confidence 678899999999999999999999999997 9999999999988742 23334
Q ss_pred HHH---hcCCCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhc-CCceeeecccchHHHHHHh------cchhhhh
Q 014447 215 YME---NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAA-GGAVAAFDFTTKGILQAAV------QGELWRL 284 (424)
Q Consensus 215 ~~~---~~~p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~df~~~~~~~~~~------~~~~~~~ 284 (424)
+.+ ...+.++++|.+... ......|.... ......++|.......... ......+
T Consensus 240 ~~~~~~~~~~~~~~~e~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (479)
T d1uoka2 240 MNEEVLSHYDIMTVGEMPGVT---------------TEEAKLYTGEERKELQMVFQFEHMDLDSGEGGKWDVKPCSLLTL 304 (479)
T ss_dssp HHHHTGGGSCCEEEEECTTCC---------------HHHHHHHHCGGGCSCSCEECCGGGSTTEETTEEEEECCCCHHHH
T ss_pred HHHHHHhcCccceeecccCCc---------------hHhhhhhccCCCcccccccCcccchhhhhccCcccccchhhhHH
Confidence 322 223467889976531 33444444322 2333344443321110000 0000000
Q ss_pred hhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCC----CchhHHHHHHHHHcCCCeeEEecCCCC
Q 014447 285 KDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPF----PSDKVMLGYAYILTHPGTPCIFYDHFF 347 (424)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~----~~~~~~~a~a~~l~~pG~P~iyyG~~~ 347 (424)
.......... .........|++|||+.|..+.... ..++.++|++++||+||+||||||||+
T Consensus 305 ~~~~~~~~~~-~~~~~~~~~~~~nhd~~~~~~~~~~~~~~~~~~~~~~~~~l~t~pGiP~IyyGdEi 370 (479)
T d1uoka2 305 KENLTKWQKA-LEHTGWNSLYWNNHDQPRVVSRFGNDGMYRIESAKMLATVLHMMKGTPYIYQGEEI 370 (479)
T ss_dssp HHHHHHHHHH-TSSSSCCEECSCCTTSCCHHHHTSCSSTTHHHHHHHHHHHHHTSSSEEEEETTGGG
T ss_pred hhhHHHHhhh-cccccccceecccccccccccccCccHHHHHHHHHHHHHHHHhCCCCccccccccc
Confidence 0000000000 0012234679999999988665432 235778899999999999999999974
|
| >d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=5.9e-55 Score=423.54 Aligned_cols=300 Identities=22% Similarity=0.287 Sum_probs=212.9
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC-----------CCCCCcccccCCCCCCCCCH
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-----------PQGYMPGRLYDLDASKYGSQ 90 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~-----------~~gY~~~d~~~id~~~~Gt~ 90 (424)
.++||+|.|.| +|++|+++|||||+||||+||||||++++. ||||++.||++|| |+|||+
T Consensus 4 ~~~~i~~~f~~--------~f~~i~~~ldyl~~lGv~aIwl~Pi~~~~~~~~~~~~~~~~y~gY~~~dy~~vd-~~~Gt~ 74 (344)
T d1ua7a2 4 KSGTILHAWNW--------SFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGN-RYLGTE 74 (344)
T ss_dssp TTSCEEECTTB--------CHHHHHHTHHHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEE-TTTEEH
T ss_pred CCCeEEEecCC--------cHHHHHHhHHHHHHcCCCEEEeCCCeeCCCcCCCCCCCCCCccccccccCCCCC-CCCCCH
Confidence 46799999996 599999999999999999999999998652 5899999999999 999999
Q ss_pred HHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCC
Q 014447 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAP 170 (424)
Q Consensus 91 edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (424)
+|||+||++||++|||||+|+|+||++.+|+.....+.. .+.|+.... ....|.+. .......+.++|
T Consensus 75 ~df~~LV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~--------~~~~~~~~~--~~~~~~~~--~~~~~~~~~~l~ 142 (344)
T d1ua7a2 75 QEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKS--------IPNWTHGNT--QIKNWSDR--WDVTQNSLLGLY 142 (344)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECCSBCCSCTTTSCHHHHT--------STTCEEECC--BCCCTTCH--HHHHHSBBTTBC
T ss_pred HHHHHHHHHhcccceeEeeccceeeecCCCchhhccccC--------CcccccCCC--CCCCCCCC--cCcccCccccCC
Confidence 999999999999999999999999999998743321110 112221100 00111110 001123456799
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH----HHHHHH---HHhcCCCeEEeeecCCCCCCCCCCCCCC
Q 014447 171 DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP----SITKVY---MENTSPDFAVGEKWDSLSYGPDGKPDAN 243 (424)
Q Consensus 171 dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~----~~~~~~---~~~~~p~~~v~E~~~~~~~~~~~~~~~~ 243 (424)
|||++||+||++|++++++|++ +||||||+|+|++|+. .+++++ +++..+.|++||+|.+..
T Consensus 143 Dln~~np~Vr~~l~~~~~~w~~-~giDGfR~Daakhv~~~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~---------- 211 (344)
T d1ua7a2 143 DWNTQNTQVQSYLKRFLERALN-DGADGFRFDAAKHIELPDDGSYGSQFWPNITNTSAEFQYGEILQDSA---------- 211 (344)
T ss_dssp EECTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCCTTSGGGCCSHHHHHTCSSCSEEEECCCCSTT----------
T ss_pred ccccCChHHHHHHHHHHHHHHh-cCCCeEEEeeeeccCchhhHHHHHHHHHHHHhcCCceEEEEEeeccc----------
Confidence 9999999999999999999997 8999999999999975 344444 233456889999986421
Q ss_pred CCCchhHHHHHHHhcCCceeeecccchHHHHHHhcchhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCC--CC
Q 014447 244 QDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP--FP 321 (424)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~--~~ 321 (424)
.....|.. .....+|.+...+..++.+....+......... ..+..+++|++|||+.|...... .+
T Consensus 212 -----~~~~~~~~----~~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~v~f~~NHD~~r~~~~~~~~~~ 279 (344)
T d1ua7a2 212 -----SRDAAYAN----YMDVTASNYGHSIRSALKNRNLGVSNISHYASD---VSADKLVTWVESHDTYANDDEESTWMS 279 (344)
T ss_dssp -----CCHHHHHT----TSEEECHHHHHHHHHHHHHTCCCHHHHSSCSSS---SCGGGEEECSSCHHHHHSTTCSSTTCC
T ss_pred -----hhhhhhcc----CCccccccccchHHHHHhcCCcchhhHHHHHhc---CCHhhhchHhhcCCCCCCcccccccCC
Confidence 12234432 333445555555666654332222222111111 12456799999999988754432 24
Q ss_pred chhHHHHHHHHHcCC-CeeEEecCCCCC---------------cc---hHHHHHHHHHHHHhc
Q 014447 322 SDKVMLGYAYILTHP-GTPCIFYDHFFD---------------WG---LKEAISKLAAVRNRN 365 (424)
Q Consensus 322 ~~~~~~a~a~~l~~p-G~P~iyyG~~~~---------------w~---l~~~~~~L~~lR~~~ 365 (424)
..+.++|+|+++++| |+|+||||+|++ |. -...+++++++||..
T Consensus 280 ~~~~~la~a~ll~~~~G~P~iY~G~E~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~frn~~ 342 (344)
T d1ua7a2 280 DDDIRLGWAVIASRSGSTPLFFSRPEGGGNGVRFPGKSQIGDRGSALFEDQAITAVNRFHNVM 342 (344)
T ss_dssp HHHHHHHHHHHHTSSSSEEEEECCCTTCBTTBSCCSSCBTBSCCCGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEechhccCCCCCCCccccCCCCcccccccHHHHHHHHHHhhc
Confidence 567889999999987 999999999864 11 246689999999874
|
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=9.8e-55 Score=433.22 Aligned_cols=317 Identities=17% Similarity=0.149 Sum_probs=213.1
Q ss_pred CCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHH
Q 014447 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQ 98 (424)
Q Consensus 21 ~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~ 98 (424)
+++.|+||++. +++.+ .|||+||+++|||||+|||++||||||++.+ .+|||+++||++|| |+|||+|||++||+
T Consensus 14 ~~~~viYe~~~-~~f~~-~Gd~~g~~~~ldyl~~LGv~~i~L~Pv~~~~~~~~~GY~~~d~~~vd-p~~G~~~d~~~lv~ 90 (420)
T d2bhua3 14 LADCVFYEVHV-GTFTP-EGTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPY-APYGRPEDLMALVD 90 (420)
T ss_dssp GGGCCEEEECH-HHHSS-SCSHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEEC-GGGCCHHHHHHHHH
T ss_pred ccccEEEEEeh-hhcCC-CCCHHHHHHhHHHHHHcCCCEEEeCCCCcCCCCCCCCCCcccCCCcC-cccCCHHHHHHHHH
Confidence 56789999986 44444 4999999999999999999999999998754 57999999999999 99999999999999
Q ss_pred HHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHH
Q 014447 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPR 178 (424)
Q Consensus 99 ~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~ 178 (424)
+||++||+||+|+|+||++.+|+. ..... +.+ |.+ .......+|||++||+
T Consensus 91 ~aH~~gi~VilD~V~NH~~~~~~~-----~~~~~------~~~-----------~~~-------~~~~~~~~dlN~~np~ 141 (420)
T d2bhua3 91 AAHRLGLGVFLDVVYNHFGPSGNY-----LSSYA------PSY-----------FTD-------RFSSAWGMGLDYAEPH 141 (420)
T ss_dssp HHHHTTCEEEEEECCSCCCSSSCC-----HHHHC------GGG-----------EEE-------EEECSSSEEECTTSHH
T ss_pred HHHhccccccccccccccCCCCcc-----ccccc------ccc-----------ccc-------cccccccccccccChH
Confidence 999999999999999999988752 10000 000 000 0011235789999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEecccCCCCH----HHHHHH---HHhcCC-CeEEeeecCCCCCC---CCCCCCCCCCCc
Q 014447 179 VQKELSDWMNWLKTEIGFDGWRFDFVKGYAP----SITKVY---MENTSP-DFAVGEKWDSLSYG---PDGKPDANQDGH 247 (424)
Q Consensus 179 v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~----~~~~~~---~~~~~p-~~~v~E~~~~~~~~---~~~~~~~~~~~~ 247 (424)
|+++|++++++|++++||||||+|+|++++. .+++++ +++..| .+++||.|.+.... ....... .+.+
T Consensus 142 v~~~~~~~~~~Wl~~~GVDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~~-~~~~ 220 (420)
T d2bhua3 142 MRRYVTGNARMWLRDYHFDGLRLDATPYMTDDSETHILTELAQEIHELGGTHLLLAEDHRNLPDLVTVNHLDGIW-TDDF 220 (420)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEETTGGGCCCCSSSCHHHHHHHHHHTTCSCCEEEEECSSCCTHHHHTTCCSEEE-CTHH
T ss_pred HHHHHHHHhheeeecccccEEEEeeeeeeccccccccHHHHHHHHHhhcCCceeeecccCCchhhhccccccccc-cccc
Confidence 9999999999999879999999999999854 466665 555677 77999998653200 0000000 0112
Q ss_pred hhHHHHHHHhcCCceeeecccchHHHHHHhc-chhhhhhhhcCCCC------CCcCcCCCcceecccCCCCC-------c
Q 014447 248 RGALKDWVQAAGGAVAAFDFTTKGILQAAVQ-GELWRLKDSNGKPP------GFIGILPQNAVTFIDNHDTG-------S 313 (424)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~f~~nHD~~-------r 313 (424)
...+..+..................+...+. +............. ..........++|++|||+. |
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~nHD~~~~~~~~~r 300 (420)
T d2bhua3 221 HHETRVTLTGEQEGYYAGYRGGAEALAYTIRRGWRYEGQFWAVKGEEHERGHPSDALEAPNFVYCIQNHDQIGNRPLGER 300 (420)
T ss_dssp HHHHHHHHHCCCSGGGGGCCCSHHHHHHHHHHSSSCEEEEECCTTCCEEEECCCTTCCGGGEEEESCCHHHHHTSTTCCC
T ss_pred chhhhhcccccccccccccchhhHHHHHHHhhccccccchhhhhchhhhhcccccccchhheeeeecccccccccccccc
Confidence 2233333332222111111112222222211 10000000000000 00000123458899999972 2
Q ss_pred CcccCCCCchhHHHHHHHHHcCCCeeEEecCCCCC---------------------------------------------
Q 014447 314 TQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFD--------------------------------------------- 348 (424)
Q Consensus 314 ~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~~--------------------------------------------- 348 (424)
.........+++++|++++|++||+|+||||||++
T Consensus 301 ~~~~~~~~~~~~k~a~~~llt~pG~P~iy~GdEig~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (420)
T d2bhua3 301 LHQSDGVTLHEYRGAAALLLTLPMTPLLFQGQEWAASTPFQFFSDHAGELGQAVSEGRKKEFGGFSGFSGEDVPDPQAEQ 380 (420)
T ss_dssp GGGSTTCCHHHHHHHHHHHHHSSSEEEEETTGGGTCSSCCCCCCCCCHHHHHHHHHHHHHHC---------CCCCTTSHH
T ss_pred cccchhhhHHHHHHHHHHHHhCCCCCEEeCChhhCCCCCccccccccchhhccccccccccccCCCccccccCCCccccc
Confidence 22233345678899999999999999999999752
Q ss_pred --------c---------chHHHHHHHHHHHHhcCCCCC
Q 014447 349 --------W---------GLKEAISKLAAVRNRNGINTA 370 (424)
Q Consensus 349 --------w---------~l~~~~~~L~~lR~~~~al~~ 370 (424)
| +++++||+|++|||++|+|+.
T Consensus 381 ~~~~~~~~w~~~~~~~~~~~~~~yr~Li~lRk~~p~l~~ 419 (420)
T d2bhua3 381 TFLNSKLNWAEREGGEHARTLRLYRDLLRLRREDPVLHN 419 (420)
T ss_dssp HHHTTSCCSGGGGSHHHHHHHHHHHHHHHHHHHCTTTTC
T ss_pred ccccccCCHHHhcccCcHHHHHHHHHHHHHHhcCHHHhC
Confidence 1 388999999999999999974
|
| >d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylosucrase species: Neisseria polysaccharea [TaxId: 489]
Probab=100.00 E-value=6.2e-54 Score=440.39 Aligned_cols=330 Identities=19% Similarity=0.237 Sum_probs=234.5
Q ss_pred cCCCCC--CceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC---CCCCCCcccccCCCCCCCCCHH
Q 014447 17 FLPFTS--PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV---APQGYMPGRLYDLDASKYGSQA 91 (424)
Q Consensus 17 ~p~~~~--~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~---~~~gY~~~d~~~id~~~~Gt~e 91 (424)
.|.|.+ +.+.|+++. |.. ||||+||++||||||+||||+||||||++++ ++|||+++||++|| |+|||++
T Consensus 89 ~~~w~~~~~~~~~~~y~-~~f---gGDl~Gi~~kLdYLk~LGVt~I~L~Pi~~~p~~~sd~GY~v~dy~~Vd-p~lGt~e 163 (554)
T d1g5aa2 89 NPDWILSNKQVGGVCYV-DLF---AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVN-PALGTIG 163 (554)
T ss_dssp CGGGGGCTTCCEEEECH-HHH---HSSHHHHHTTHHHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBC-TTTCCHH
T ss_pred CCccccCcCceeEEEec-ccc---CcCHHHHHHhhHHHHHcCCCEEEECCCCCCCCCCCCCCcCcccCCCCC-cccCCHH
Confidence 477874 457788886 544 6999999999999999999999999999986 47999999999999 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEeeecccCCCCCCC----------CCcceeecCCCCCC--CCCCCCCcccccCCCcc-CCCCC
Q 014447 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTSD--DRLDWGPSFICRGDKEY-SDGQG 158 (424)
Q Consensus 92 dl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~----------~~~~~~~~~~~~~~--~~~~w~~~~~~~~~~~~-~~~~~ 158 (424)
||++||++||++||+||+|+|+||||.+|+. ....|+.++++... ....+...+.......+ ....+
T Consensus 164 dl~~Lv~~aH~rGI~VilD~V~NHts~~h~w~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (554)
T d1g5aa2 164 DLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGGFSQLEDG 243 (554)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCGGGTTSBCEESSSHHHHHHTTTCCCSSTTTCSTTEEECTTS
T ss_pred HHHHHHHHHHHCCCEEEEEECcCCCCCCccchhhhhccCCccccceEEcCCCCCCccccCCCcccCCCCCCcceeecCCC
Confidence 9999999999999999999999999998851 11123333331100 00001111100000001 11224
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC-------------HHHHHHH---HHhcCC-
Q 014447 159 NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------PSITKVY---MENTSP- 221 (424)
Q Consensus 159 ~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~-------------~~~~~~~---~~~~~p- 221 (424)
.+....+...+||||++||+|+++|++++++|++ +||||||+|+++++. .++++.+ ++...|
T Consensus 244 ~~~~~~f~~~~~dln~~np~V~~~~~~~~~~w~~-~gvDGfRlDa~~~~~~~~~~~~~n~p~~~~~~~~~~~~~~~~~p~ 322 (554)
T d1g5aa2 244 RWVWTTFNSFQWDLNYSNPWVFRAMAGEMLFLAN-LGVDILRMDAVAFIWKQMGTSCENLPQAHALIRAFNAVMRIAAPA 322 (554)
T ss_dssp CEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHHT-TTCSEEEETTGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHHHCTT
T ss_pred ceeecccCCcccccccCCHHHHHHHHhhhhhhhh-ccccccccccchhhccccccccccCchhhHHHHHHHHHHhhhCCC
Confidence 5566778899999999999999999999999997 999999999999884 3466665 556678
Q ss_pred CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh-cchhhhhhhhcCCCCCCcCcCCC
Q 014447 222 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQ 300 (424)
Q Consensus 222 ~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
++++||++.. ...+..|+.. .+....+++.....+..+. .++...+.......+... .+.
T Consensus 323 ~~l~aE~~~~----------------~~~~~~y~g~-~~~~~~~~~~~~~~~~~a~~~~~~~~l~~~l~~~~~~~--~~~ 383 (554)
T d1g5aa2 323 VFFKSEAIVH----------------PDQVVQYIGQ-DECQIGYNPLQMALLWNTLATREVNLLHQALTYRHNLP--EHT 383 (554)
T ss_dssp CEEEECCCSC----------------HHHHGGGBST-TSBSEEECHHHHHHHHHHHHHCCCHHHHHHHHHSCCCC--TTC
T ss_pred ceeeccccCC----------------HHHHHHHhCC-CccccccccccchhhhhhcccccHHHHHHHHHhCcccC--CCC
Confidence 7899998863 4555566543 4566678877766655544 223222222221112211 134
Q ss_pred cceecccCCCCCcC-----------------------------cccC-------------------------------CC
Q 014447 301 NAVTFIDNHDTGST-----------------------------QRLW-------------------------------PF 320 (424)
Q Consensus 301 ~~~~f~~nHD~~r~-----------------------------~~~~-------------------------------~~ 320 (424)
..++|++|||.-.. .... ..
T Consensus 384 ~~~nfl~~HD~ig~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~n~~~~d~~~~~~~~~~~~~~~~~~~ 463 (554)
T d1g5aa2 384 AWVNYVRSHDDIGWTFADEDAAYLGISGYDHRQFLNRFFVNRFDGSFARGVPFQYNPSTGDCRVSGTAAALVGLAQDDPH 463 (554)
T ss_dssp EEEEESCCSSCBCCCCCHHHHHHTTCCHHHHHHHHHHHHTTCSTTCCCCCEEECCCTTTCCCEEECCHHHHHTGGGTCTT
T ss_pred eEEeehhcccccccccchhhhhhhcccchHHHHHHhhhcccccccccccCcchhccccccccccccchhhccccccchHH
Confidence 56899999995110 0000 00
Q ss_pred CchhHHHHHHHHHcCCCeeEEecCCCCC------------------c----------------------chHHHHHHHHH
Q 014447 321 PSDKVMLGYAYILTHPGTPCIFYDHFFD------------------W----------------------GLKEAISKLAA 360 (424)
Q Consensus 321 ~~~~~~~a~a~~l~~pG~P~iyyG~~~~------------------w----------------------~l~~~~~~L~~ 360 (424)
..+++++|++++||+||||+||||||++ | .+++++|+|++
T Consensus 464 ~~~r~~la~alllt~pGiP~IYyGdEiG~~nd~~~~~d~~~~~~~rw~~r~~~~~~~~~~~~d~~s~~~~v~~~~r~Li~ 543 (554)
T d1g5aa2 464 AVDRIKLLYSIALSTGGLPLIYLGDEVGTLNDDDWSQDSNKSDDSRWAHRPRYNEALYAQRNDPSTAAGQIYQDLRHMIA 543 (554)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSSGGGCTTTTTCGGGGGCCCCCHHHHTTTTCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhhheechhhCCCCChhhccCCCCCCCchhhccccCCHHHHHhhhCcccHHHHHHHHHHHHHH
Confidence 1236788999999999999999999854 1 16888999999
Q ss_pred HHHhcCCCCCC
Q 014447 361 VRNRNGINTAS 371 (424)
Q Consensus 361 lR~~~~al~~G 371 (424)
||+++|||+.|
T Consensus 544 lRk~~pAf~~G 554 (554)
T d1g5aa2 544 VRQSNPRFDGG 554 (554)
T ss_dssp HHHHCGGGCSS
T ss_pred HHhhCHhhcCC
Confidence 99999999876
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Probab=100.00 E-value=1.7e-52 Score=407.92 Aligned_cols=311 Identities=21% Similarity=0.271 Sum_probs=218.8
Q ss_pred CceEEEeecCCCCCCCCCcHHHHHhhh-hHHHHcCCCEEEeCCCCCCCC----CCCCCcccccCCCCCCCCCHHHHHHHH
Q 014447 23 PALLFQGFNWESSNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSVA----PQGYMPGRLYDLDASKYGSQADLKSLI 97 (424)
Q Consensus 23 ~~v~~~~f~~ds~~~~~G~~~gi~~~L-~ylk~lGv~~I~l~Pi~~~~~----~~gY~~~d~~~id~~~~Gt~edl~~Lv 97 (424)
.++|+|+|.|. +++|++++ +|||+||||+||||||++++. +|||+|+|| +|| |+|||++|||+||
T Consensus 2 ~~~~~~~f~w~--------~~~i~~~~~dyl~~lG~tai~l~P~~~~~~~~~~y~gY~~~dy-~vd-~~~Gt~~dfk~LV 71 (354)
T d1g94a2 2 PTTFVHLFEWN--------WQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSY-ELQ-SRGGNRAQFIDMV 71 (354)
T ss_dssp CCCEEEETTCC--------HHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCS-CSC-BTTBCHHHHHHHH
T ss_pred CcceEEcccCC--------HHHHHHHHHHHHHHcCCCEEEeCcCccCCCCCCCcccCCCCcc-eeC-CCCCCHHHHHHHH
Confidence 47899999994 99999887 699999999999999999764 479999996 699 9999999999999
Q ss_pred HHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCH
Q 014447 98 QAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP 177 (424)
Q Consensus 98 ~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np 177 (424)
++||++||+||||+|+||++.+++........+....+.....++..........+. ..........+.++||||++||
T Consensus 72 ~~aH~~GI~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~dln~~n~ 150 (354)
T d1g94a2 72 NRCSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQDFHESCTINNSDYG-NDRYRVQNCELVGLADLDTASN 150 (354)
T ss_dssp HHHHHTTCEEEEEEECSEECSSCEEBTTSCEEBTTBCSSCCGGGBCCCCBCCTTHHH-HCHHHHHHSBSTTCEEBCTTSH
T ss_pred HHHhccCceeEEEeeccccccccCCCcccccccccCCCcCCccccccCCCCCCcccc-ccccceeccccCCCCccccCCH
Confidence 999999999999999999998875211111101110011011111000000000000 0000111234567999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHH
Q 014447 178 RVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQ 256 (424)
Q Consensus 178 ~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (424)
+||++|++.+++|++ +||||||+|+++++++++|+.+.+..++ .+.++|++.... +... ...+
T Consensus 151 ~Vr~~l~d~~~~~~e-~gvdGfR~Da~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-------~~~~------~~~~-- 214 (354)
T d1g94a2 151 YVQNTIAAYINDLQA-IGVKGFRFDASKHVAASDIQSLMAKVNGSPVVFQEVIDQGG-------EAVG------ASEY-- 214 (354)
T ss_dssp HHHHHHHHHHHHHHH-HTCCEEEEETGGGSCHHHHHHHHHTSCSCCEEEECCCCSSC-------CSSC------GGGG--
T ss_pred HHHHHHHHHHHHhhh-hccchhhccchhhCCHHHHHHHHhhhcccceeEEEEeccCc-------cccc------chhh--
Confidence 999999999999997 9999999999999999999999988887 678999986432 1100 0011
Q ss_pred hcCCceeeecccchHHHHHHhc-chhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCC-----CchhHHHHHH
Q 014447 257 AAGGAVAAFDFTTKGILQAAVQ-GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPF-----PSDKVMLGYA 330 (424)
Q Consensus 257 ~~~~~~~~~df~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~-----~~~~~~~a~a 330 (424)
.+...+++|.+...+...+. +....+..... ......+..+++|++|||++|..+.... ..++.++|++
T Consensus 215 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~v~Fl~NHD~~R~~~~~~~~~~~~~~~~~~lA~a 289 (354)
T d1g94a2 215 --LSTGLVTEFKYSTELGNTFRNGSLAWLSNFGE---GWGFMPSSSAVVFVDNHDNQRGHGGAGNVITFEDGRLYDLANV 289 (354)
T ss_dssp --GGGSEEECHHHHHHHHHHHHHSCGGGGGGTTG---GGTCCCGGGEEECSCCTTGGGTSSCCTTSCCGGGTHHHHHHHH
T ss_pred --cCCCcccchhhcchhhhHhhhhhHHHHHHHhh---hhccCCccceEEeecccccccccccCcccccccchHHHHHHHH
Confidence 12345677776666655543 33333333211 1112235678999999999998654331 3457889999
Q ss_pred HHHcCC-CeeEEecCCCCC------------------------cc---hHHHHHHHHHHHHhc
Q 014447 331 YILTHP-GTPCIFYDHFFD------------------------WG---LKEAISKLAAVRNRN 365 (424)
Q Consensus 331 ~~l~~p-G~P~iyyG~~~~------------------------w~---l~~~~~~L~~lR~~~ 365 (424)
++|++| |+|+||||+|+. |. -+..||+|++||+..
T Consensus 290 fil~~p~G~P~iyyG~ef~~~~~~~~~~~~~~~~~~~~~~~~~W~~~hr~~~i~~mi~fr~~~ 352 (354)
T d1g94a2 290 FMLAYPYGYPKVMSSYDFHGDTDAGGPNVPVHNNGNLECFASNWKCEHRWSYIAGGVDFRNNT 352 (354)
T ss_dssp HHHHSCSSEEEEEECBCCTTCTTCCCCSSCSEETTEECBSSSSBCCGGGSHHHHHHHHHHHHS
T ss_pred HHHHcCCCEEEEEeecCcCCCCcCCCCCCCccCCCCCCcCCCCchhhhhHHHHHHHHHhhccc
Confidence 999999 999999998752 32 357899999999974
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Probab=100.00 E-value=5.6e-52 Score=407.71 Aligned_cols=314 Identities=21% Similarity=0.285 Sum_probs=221.2
Q ss_pred CCCC-CCceEEEeecCCCCCCCCCcHHHHHhhhh-HHHHcCCCEEEeCCCCCCCC------CCCCCcccccCCCCCCCCC
Q 014447 18 LPFT-SPALLFQGFNWESSNKAGGWYNSLKNSIP-DLSNAGITHVWLPPPSQSVA------PQGYMPGRLYDLDASKYGS 89 (424)
Q Consensus 18 p~~~-~~~v~~~~f~~ds~~~~~G~~~gi~~~L~-ylk~lGv~~I~l~Pi~~~~~------~~gY~~~d~~~id~~~~Gt 89 (424)
|.|+ +++||+|+|.|. +++|+++|+ |||+||||+||||||++++. ++||++.|| +|| ++|||
T Consensus 4 ~~~~~~~~~i~~~f~W~--------~~~i~~~~~~yl~~lG~tai~l~P~~e~~~~~~~~~~~~Y~~~dY-~id-~~~Gt 73 (378)
T d1jaea2 4 ANFASGRNSIVHLFEWK--------WNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSY-IIN-TRSGD 73 (378)
T ss_dssp CCCCTTCEEEEEETTCC--------HHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCS-CSE-ETTEE
T ss_pred CCCCCCCceEEEeccCc--------HHHHHHHHHHHHHHhCCCEEEeCcccccCCCCCCCCccccCCccc-eeC-CCCCC
Confidence 5666 468999999994 999999998 89999999999999998652 478999996 699 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcc-eeecCCC-CCCCCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGI-YCIFEGG-TSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ 167 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~-~~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (424)
++|||+||++||++||+||||+|+||++.+++..... ....... .+..+..............|.+ ......+.+.
T Consensus 74 ~~df~~LV~~aH~~GI~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 151 (378)
T d1jaea2 74 ESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDFHSPCEVNNYQD--ADNVRNCELV 151 (378)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCSSCEEBTTSCEEBTTTTBBTTTTBCGGGBCCCCBCCCTTC--HHHHHHSBBT
T ss_pred HHHHHHHHHHHHhcCceeeeeecccccccccCCCccccccCCCcccCcCCCCCccccCCCCCcCCCCC--cccccccccc
Confidence 9999999999999999999999999999887421110 0000000 0000000000000000011111 0111223457
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcC------------CCeEEeeecCCCCCC
Q 014447 168 PAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTS------------PDFAVGEKWDSLSYG 235 (424)
Q Consensus 168 ~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~------------p~~~v~E~~~~~~~~ 235 (424)
.+||||++||+||++|++++++|++ +||||||+|+|++++.++++.+.+..+ ..++++|++....
T Consensus 152 ~l~Dln~~np~V~~~l~~~~~~w~e-~gvDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~-- 228 (378)
T d1jaea2 152 GLRDLNQGSDYVRGVLIDYMNHMID-LGVAGFRVDAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDLGG-- 228 (378)
T ss_dssp TBCBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCHHHHHHHHHTCCCCCGGGTCCTTCCCEEEEECCCCSS--
T ss_pred ccCccccCCHHHHHHHHHHHHHHHH-hCCCceeeeeecccCHHHHHHHHHhhhhhccccccccccccceeeehhcccc--
Confidence 8999999999999999999999996 999999999999999999999866542 2468999986422
Q ss_pred CCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc--hhhhhhhhcCCCCCCcCcCCCcceecccCCCCCc
Q 014447 236 PDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG--ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGS 313 (424)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r 313 (424)
+... . .......++++|.+...+..++.+ .+..+..... ......+..+++|++|||++|
T Consensus 229 -----~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~v~Fl~NHD~~R 290 (378)
T d1jaea2 229 -----EAIS--------K--NEYTGFGCVLEFQFGVSLGNAFQGGNQLKNLANWGP---EWGLLEGLDAVVFVDNHDNQR 290 (378)
T ss_dssp -----SSCC--------G--GGTTTSSEEECHHHHHHHHHHHTTTSCGGGGGGCSG---GGTCCCGGGEEECSCCTTHHH
T ss_pred -----cccc--------c--hhccccchhcchhhhhhhhhhhccCccHHHHHHHhh---hhccCCccceeEeeccCCCCC
Confidence 1100 0 011345677888888777776643 2333333211 111113456799999999999
Q ss_pred CcccCC---CCchhHHHHHHHHHcCC-CeeEEecCCCCC----------------------------cc---hHHHHHHH
Q 014447 314 TQRLWP---FPSDKVMLGYAYILTHP-GTPCIFYDHFFD----------------------------WG---LKEAISKL 358 (424)
Q Consensus 314 ~~~~~~---~~~~~~~~a~a~~l~~p-G~P~iyyG~~~~----------------------------w~---l~~~~~~L 358 (424)
..+... .+.++.++|+++|||+| |+|+||+|.++. |. .+..||+|
T Consensus 291 ~~~~~~~~~~~~~~~~lA~af~lt~p~G~P~iy~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~w~~~~r~~~i~~m 370 (378)
T d1jaea2 291 TGGSQILTYKNPKPYKMAIAFMLAHPYGTTRIMSSFDFTDNDQGPPQDGSGNLISPGINDDNTCSNGYVCEHRWRQVYGM 370 (378)
T ss_dssp HSCTTCCCTTSHHHHHHHHHHHHHSCSSEEEEEECBCCSSTTCCCCBCTTSCBCCCEECTTSCEETTBCCGGGSHHHHHH
T ss_pred cCCCcccccCCHHHHHHHHHHHHHcCCCEEEEEeccccCCCCCCCCCCCCCCCCCCCcCccCCCCCHHHHHHHHHHHHHH
Confidence 754322 35578899999999999 999999997531 42 46789999
Q ss_pred HHHHHh
Q 014447 359 AAVRNR 364 (424)
Q Consensus 359 ~~lR~~ 364 (424)
++|||.
T Consensus 371 ~~frn~ 376 (378)
T d1jaea2 371 VGFRNA 376 (378)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 999986
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Probab=100.00 E-value=2.8e-51 Score=405.10 Aligned_cols=317 Identities=17% Similarity=0.150 Sum_probs=207.1
Q ss_pred CCCCC--CceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHH
Q 014447 18 LPFTS--PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADL 93 (424)
Q Consensus 18 p~~~~--~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl 93 (424)
+.|.+ +.||||++. +++.+ .|||+||+++|||||+||||+|||+||++++ .+|||++.||++|| |+|||++||
T Consensus 4 ~~~~~~~~~viYe~~v-~~f~~-~Gd~~gi~~~ldyi~~LGv~~i~l~Pv~~~~~~~~~GY~~~d~~~vd-~~~Gt~~dl 80 (400)
T d1eh9a3 4 ETFLKKEDLIIYEIHV-GTFTP-EGTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQ-NSYGGPEGF 80 (400)
T ss_dssp CCSCCSSSCCEEEECT-TTSSS-SCSHHHHHHTHHHHHHHTCCEEEECCCBCCSSSCCCSTTCCCTTCBC-STTCCHHHH
T ss_pred CCcCCCcCeEEEEEeh-hhhCC-CCCHHHHHHHhHHHHHcCCCEEEeCCcCcCCCCCCCCCCCCCCCCcC-cccCCHHHH
Confidence 45654 479999998 66665 4999999999999999999999999999876 47999999999999 999999999
Q ss_pred HHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCC
Q 014447 94 KSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDID 173 (424)
Q Consensus 94 ~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln 173 (424)
|+||++||++||+||+|+|+||+|.+|+. +... ..|+..... .........++
T Consensus 81 k~lv~~~h~~gi~VilD~V~NH~s~~~~~-----~~~~-------~~~~~~~~~---------------~~~~~~~~~~~ 133 (400)
T d1eh9a3 81 RKLVDEAHKKGLGVILDVVYNHVGPEGNY-----MVKL-------GPYFSQKYK---------------TPWGLTFNFDD 133 (400)
T ss_dssp HHHHHHHHHTTCEEEEEECCSCCCSSSCC-----HHHH-------SCCSCSSCC---------------CSSSCCCCSSS
T ss_pred HHHHHHHHhcCCceeeecccccccCCCcc-----hhhh-------ccccccccc---------------ccccccccccc
Confidence 99999999999999999999999998862 1100 011100000 00111122367
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC----CHHHHHHHHH---hcCCCeEEeeecCCCCCCC--CCCCCCC-
Q 014447 174 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY----APSITKVYME---NTSPDFAVGEKWDSLSYGP--DGKPDAN- 243 (424)
Q Consensus 174 ~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~----~~~~~~~~~~---~~~p~~~v~E~~~~~~~~~--~~~~~~~- 243 (424)
++||+|+++|++++++|++++||||||+|+|+++ +.++++++.+ +..+ +.++|.....+... .....+.
T Consensus 134 ~~np~v~~~l~d~~~~Wl~~~gvDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 212 (400)
T d1eh9a3 134 AESDEVRKFILENVEYWIKEYNVDGFRLDAVHAIIDTSPKHILEEIADVVHKYNR-IVIAESDLNDPRVVNPKEKCGYNI 212 (400)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSCCCCEEETTGGGCCCCSSSCHHHHHHHHHHHTTC-CEEECCCSCCTTTTSCGGGTCCCC
T ss_pred ccccHHHHHHHHHHHHHHhhcccceEEeechhhhcchhhhhhHHHHHHHHhhhhh-hhhhhccccCccccchhhhcccee
Confidence 8999999999999999998899999999999998 4556666633 3333 45566543322110 0000010
Q ss_pred ----CCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc-h-----hhhhhhhcCCCCCCcCcCCCcceecccCCCCCc
Q 014447 244 ----QDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-E-----LWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGS 313 (424)
Q Consensus 244 ----~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r 313 (424)
.+.+...+..++... ......++.....+...... . .......... .......+.+.++|++|||+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~nHD~~~ 290 (400)
T d1eh9a3 213 DAQWVDDFHHSIHAYLTGE-RQGYYTDFGNLDDIVKSYKDVFVYDGKYSNFRRKTHG-EPVGELDGCNFVVYIQNHDQVG 290 (400)
T ss_dssp SEEECHHHHHHHHHHHSCC-CSGGGGGCCSHHHHHHHHHSSCSCSSEEETTTTEEEC-CCCCSCCGGGEECCSCCHHHHH
T ss_pred ccccccccchhhHhhhccc-ccchhhhhhhhHHHHHHhhhhhccchhHHHHHHHhcc-cchhhhcccchhhhhhhccccc
Confidence 011223333333321 11112223222222211110 0 0000000000 0011112345688999999854
Q ss_pred CcccC-----CCCchhHHHHHHHHHcCCCeeEEecCCCCC----------------------------------c-----
Q 014447 314 TQRLW-----PFPSDKVMLGYAYILTHPGTPCIFYDHFFD----------------------------------W----- 349 (424)
Q Consensus 314 ~~~~~-----~~~~~~~~~a~a~~l~~pG~P~iyyG~~~~----------------------------------w----- 349 (424)
..... ..++++.++|++++|++||+|+||||||++ |
T Consensus 291 ~~~~~~~~~~~~~~~~~~~a~a~~l~~pGiP~iy~G~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (400)
T d1eh9a3 291 NRGKGERIIKLVDRESYKIAAALYLLSPYIPMIFMGEEYGEENPFYFFSDFSDSKLIQGVREGRKKENGQDTDPQDESTF 370 (400)
T ss_dssp TTTTCCCGGGGSCHHHHHHHHHHHHSSSSCCEEESSGGGTCCCCCCCCCCCCSTTHHHHHHHHHHHHTCCCSCTTSHHHH
T ss_pred cccchhhhHHHhhhhHHHHHHHHHHhCCCCCEEECChhhCCCCCCCchhhcccHHHhhhhHhhhcCccCCCCCccccccc
Confidence 32221 124567899999999999999999999853 1
Q ss_pred -----------chHHHHHHHHHHHHhcCC
Q 014447 350 -----------GLKEAISKLAAVRNRNGI 367 (424)
Q Consensus 350 -----------~l~~~~~~L~~lR~~~~a 367 (424)
+++++||+|++|||++|+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~Li~lRk~~pv 399 (400)
T d1eh9a3 371 NASKLSWKIDEEIFSFYKILIKMRKELSI 399 (400)
T ss_dssp HTTSCCCCCCHHHHHHHHHHHHHHHHHTC
T ss_pred ccccCCccCCHHHHHHHHHHHHHHhHCcC
Confidence 389999999999999985
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Probab=100.00 E-value=3e-51 Score=414.01 Aligned_cols=182 Identities=20% Similarity=0.279 Sum_probs=142.3
Q ss_pred CCCCCCceEEEeecC---CCC----CCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--------------CCCCCCc
Q 014447 18 LPFTSPALLFQGFNW---ESS----NKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------------APQGYMP 76 (424)
Q Consensus 18 p~~~~~~v~~~~f~~---ds~----~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--------------~~~gY~~ 76 (424)
|.|+.+.||||++.- |+. ++++|||+||++||||||+||||+||||||++++ .+|||++
T Consensus 11 ~~~~~d~viYei~v~~f~~~~~~~~~~~~Gd~~Gi~~kLdyl~~LGvnaiwl~Pi~~~~~~~~~~~~~~~~~~~y~GY~~ 90 (475)
T d1bf2a3 11 TRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMT 90 (475)
T ss_dssp CCCGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHHHTHHHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCCB
T ss_pred CCCCcceEEEEEEhhHhccCCCCCCccccCCHHHHHhhhHHHHHcCCCEEEeCCCCcCCCcccccccccccCcCCCCCCc
Confidence 357788999999951 222 3457999999999999999999999999999864 2589999
Q ss_pred ccccCCCCCCC-------CCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccC
Q 014447 77 GRLYDLDASKY-------GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRG 149 (424)
Q Consensus 77 ~d~~~id~~~~-------Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 149 (424)
.||++|| |+| ||++|||+||++||++||+||+|+|+||++.+|+..... + ....|........
T Consensus 91 ~d~~~vd-p~y~~~~~~~Gt~~d~~~LV~~aH~~GIrVilD~V~NH~~~~~~~~~~~--------~-~~~~~~~~~~~~~ 160 (475)
T d1bf2a3 91 ENYFSPD-RRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSD--------P-TTATIYSWRGLDN 160 (475)
T ss_dssp SCSSCBC-GGGCSCCSTTHHHHHHHHHHHHHHHTTCEEEEEECCSSCTTCSBSSSSC--------S-SCBBCSSHHHHHH
T ss_pred ccCCCcC-cccccCCCCCCCHHHHHHHHHHHHhcCcEEEEEeccccccCCCcccccC--------C-CcCccccccCccc
Confidence 9999999 998 999999999999999999999999999999988621110 0 0011111000001
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH
Q 014447 150 DKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 209 (424)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~ 209 (424)
...|....+.+..+.+...+||||+.||+|++++++++++|++++||||||+|++++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~~~~~~~~w~~~~gvDGfR~D~~~~~~~ 220 (475)
T d1bf2a3 161 ATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGN 220 (475)
T ss_dssp HHHBCBCTTSSSBCCSSSSSCCBCTTSHHHHHHHHHHHHHHHHTSCCCEEEETTGGGGGB
T ss_pred ccccccCCCccccccCCCccCccchhhhHHHHHHHHHHHhhhhhcCCceEEEehHhhhch
Confidence 111222334555567788999999999999999999999999989999999999988743
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Probab=100.00 E-value=3.3e-50 Score=393.20 Aligned_cols=324 Identities=26% Similarity=0.447 Sum_probs=228.8
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCccccc---------CCCCCCCCCH
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLY---------DLDASKYGSQ 90 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~---------~id~~~~Gt~ 90 (424)
++.||+|+|.|++.++ |||+++|++||||||+||||+|||+||++++ .++||++.||+ ++| |+|||+
T Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~i~~kLdyLk~LGvt~I~l~Pi~~~~~~~~~gY~~~d~~~~~~~~~~~~vd-~~~Gt~ 80 (390)
T d1ud2a2 3 LNGTMMQYYEWHLEND-GQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVR-TKYGTK 80 (390)
T ss_dssp CCCCEEECCCTTCCCS-SCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSS-CSSCCH
T ss_pred CCCeEEEeeccCCCCC-CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCccCCcccccccccCCcC-CCCCCH
Confidence 4689999999999987 6899999999999999999999999999875 48999999996 799 999999
Q ss_pred HHHHHHHHHHHHcCCEEEEeeecccCCCCCCC---------CCcceeecC------------C---CCCC--CCCCCCCc
Q 014447 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERKD---------GRGIYCIFE------------G---GTSD--DRLDWGPS 144 (424)
Q Consensus 91 edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~---------~~~~~~~~~------------~---~~~~--~~~~w~~~ 144 (424)
+|||+||++||++||+||||+|+|||+..|+. +...|..+. . .... ....|...
T Consensus 81 ~efk~lV~~~H~~GI~VilDvV~NHt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (390)
T d1ud2a2 81 AQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHF 160 (390)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCGGGTTSSCCCCBCGGGE
T ss_pred HHHHHHHHHHHhcCCceEEEEccccccCcccchhhhhcccCcccccccccccccccccccccCCccCCcCCCCccccccc
Confidence 99999999999999999999999999987741 011111100 0 0000 00011000
Q ss_pred c-------------cccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHH
Q 014447 145 F-------------ICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSI 211 (424)
Q Consensus 145 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~ 211 (424)
. .......+...............++++|..++.+++++.+++..|++++|+||||+|+++++..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~dg~r~D~~~~~~~~~ 240 (390)
T d1ud2a2 161 NGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWY 240 (390)
T ss_dssp EEEEEETTTTEEEEEEETTCCCCSSCCCTTSCCCCCSSEEECTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHH
T ss_pred CCCCccccCCCCceeeccCCccccccccccccccccccccccccCHHHHHHHHHhhhhccceeccccccccchhhcChHH
Confidence 0 000000011111222333455778899999999999999999999988999999999999999999
Q ss_pred HHHHHH----hcCC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhc-chhhhhh
Q 014447 212 TKVYME----NTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ-GELWRLK 285 (424)
Q Consensus 212 ~~~~~~----~~~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~-~~~~~~~ 285 (424)
+..+.+ ...+ .+.++|.+... ......+..........+++.....+..+.. .....+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~e~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (390)
T d1ud2a2 241 TSDWVRHQRNEADQDLFVVGEYWKDD---------------VGALEFYLDEMNWEMSLFDVPLNYNFYRASQQGGSYDMR 305 (390)
T ss_dssp HHHHHHHHHHHCSSCCEEEECCCCSC---------------HHHHHHHHHHTTTCSEEECHHHHHHHHHHHHHCTTSCGG
T ss_pred HHHHHHHHhhhhhhheeeeccccCCc---------------cccccccccccccccchhhHHHHHHHHHHhcccchHHHH
Confidence 888744 3345 56889987532 3344444444455566677766665555432 2222222
Q ss_pred hhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCc--hhHHHHHHHHHcCCCeeEEecCCCCCc------chHHHHHH
Q 014447 286 DSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS--DKVMLGYAYILTHPGTPCIFYDHFFDW------GLKEAISK 357 (424)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~--~~~~~a~a~~l~~pG~P~iyyG~~~~w------~l~~~~~~ 357 (424)
.... .......+.+.++|++|||++|..+...... .+.++|.++++++||+|+||||||++- ...+.+++
T Consensus 306 ~~~~--~~~~~~~~~~~v~fl~nHD~~r~~~~~~~~~~~~~~~~~~~il~~~pG~P~iy~GdE~G~~~~~~~~~~d~i~~ 383 (390)
T d1ud2a2 306 NILR--GSLVEAHPMHAVTFVDNHDTQPGESLESWVADWFKPLAYATILTREGGYPNVFYGDYYGIPNDNISAKKDMIDE 383 (390)
T ss_dssp GTTT--TCHHHHCGGGEEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCCCHHHHHH
T ss_pred HHHh--hccccCCccceEEEccCCccccccccccCcCHHHHHHHHHHHHHhCCCCeEEEchhhcCCCCCCCccchHHHHH
Confidence 2221 1111223567799999999999988765332 344555566778899999999999863 46899999
Q ss_pred HHHHHHh
Q 014447 358 LAAVRNR 364 (424)
Q Consensus 358 L~~lR~~ 364 (424)
|+++||+
T Consensus 384 l~~~R~~ 390 (390)
T d1ud2a2 384 LLDARQN 390 (390)
T ss_dssp HHHHHHH
T ss_pred HHHHcCC
Confidence 9999985
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.1e-50 Score=391.97 Aligned_cols=319 Identities=16% Similarity=0.177 Sum_probs=213.8
Q ss_pred cCCCCCCceEEEeec--C--CCCCCCCCcHHHHHhhh-hHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCC
Q 014447 17 FLPFTSPALLFQGFN--W--ESSNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGS 89 (424)
Q Consensus 17 ~p~~~~~~v~~~~f~--~--ds~~~~~G~~~gi~~~L-~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt 89 (424)
.++|-+.-+|||++. | ++.++++|||+||++|| ||||+||||+||||||++++ .+|||++.||++|| |+|||
T Consensus 10 ~~~~~~~~~iYe~~~~~f~~~~~~~~~g~~~gi~~klidyl~~LGv~~iwl~Pi~~~~~~~~hGY~~~d~~~vd-p~~Gt 88 (396)
T d1m7xa3 10 ANQFDAPISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPT-RRFGT 88 (396)
T ss_dssp HHSTTSCCEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEEEEC-GGGSC
T ss_pred CCCCCCCcEEEEEccCccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCcCcCcCCCcC-cccCC
Confidence 455666678999874 2 44555679999999997 99999999999999999987 47999999999999 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA 169 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (424)
++|||+||++||++||+||+|+|+||++.+|...... . .+... .+.+ .........+.
T Consensus 89 ~~d~~~LV~~aH~~gi~VilD~V~NH~~~~~~~~~~~----~--------~~~~~-------~~~~---~~~~~~~~~~~ 146 (396)
T d1m7xa3 89 RDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEF----D--------GTNLY-------EHSD---PREGYHQDWNT 146 (396)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTSCCCSTTSSTTG----G--------GSCSS-------BCC--------------C
T ss_pred HHHHHHHHHHHhhhhhhhhhcccccccCCcccccccc----c--------CCccc-------cccC---CCCCCCCCCCC
Confidence 9999999999999999999999999999887531110 0 00000 0000 00111122356
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC------------------------CHHHHHHH---HHhcCC-
Q 014447 170 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITKVY---MENTSP- 221 (424)
Q Consensus 170 ~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~------------------------~~~~~~~~---~~~~~p- 221 (424)
+++|+++|+++.++.+.+++|++++||||||+|++++. ..++++.+ ++...|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~gvDG~R~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (396)
T d1m7xa3 147 LIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSG 226 (396)
T ss_dssp CCBCTTSHHHHHHHHHHHHHHHHHSCCCEEEECCSHHHHCC--------------CTTCCHHHHHHHHHHHHHHHHSSTT
T ss_pred ccccCCCchhHHHHHHHHHHHHHHhCCcceeeechhhhccchhcccccccccccccccccchHHHHHHHHHHHHhhhCCC
Confidence 77999999999999999999999999999999987542 12244444 556677
Q ss_pred CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch-hhhhh--hh--cCCCCCCcC
Q 014447 222 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE-LWRLK--DS--NGKPPGFIG 296 (424)
Q Consensus 222 ~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~-~~~~~--~~--~~~~~~~~~ 296 (424)
.++++|.+....... .+. ..........+++.....+....... ..... +. .........
T Consensus 227 ~~~~~e~~~~~~~~~----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (396)
T d1m7xa3 227 AVTMAEESTDFPGVS----RPQ-----------DMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTE 291 (396)
T ss_dssp CEEEECCSSCCTTTT----BCT-----------TTTBSCCSEEECHHHHHHHHHHHHSCGGGGGGCTHHHHGGGTTTTTS
T ss_pred ceEEEeecCCCcccc----ccc-----------cccccchhhhhccchhhhhhhhccchhhhhhhhccccchhhhhhhhh
Confidence 778999876422100 000 00011233334444443333332211 10000 00 000000000
Q ss_pred cCCCcceecccCCCCCcCcccCCCC----chhHHHHHHHHHcCCCeeEEecCCCCC------------c-----------
Q 014447 297 ILPQNAVTFIDNHDTGSTQRLWPFP----SDKVMLGYAYILTHPGTPCIFYDHFFD------------W----------- 349 (424)
Q Consensus 297 ~~~~~~~~f~~nHD~~r~~~~~~~~----~~~~~~a~a~~l~~pG~P~iyyG~~~~------------w----------- 349 (424)
........+..+||..|........ .+++++|++++||+||+|+||||||++ |
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~a~llt~pG~P~IYyGdEiG~~~~~~~~~~~~w~~~~~~~~~~~ 371 (396)
T d1m7xa3 292 NFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDASLDWHLLEGGDNWHH 371 (396)
T ss_dssp CEEEEECGGGSSTTSCCHHHHSCSSHHHHHHHHHHHHHHHHHSSSEEEEETTTTTTCSSCCCTTSCCCGGGGCSSCCHHH
T ss_pred hccccccccccccCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCccEeecccccCCCCCCCCCCCCChhhccCcchhhH
Confidence 0112235577888888765544322 236789999999999999999999874 3
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCe
Q 014447 350 GLKEAISKLAAVRNRNGINTASRV 373 (424)
Q Consensus 350 ~l~~~~~~L~~lR~~~~al~~G~~ 373 (424)
++.++||+|++||+++|||..|.+
T Consensus 372 ~l~~~~~~L~~lR~~~paL~~~~~ 395 (396)
T d1m7xa3 372 GVQRLVRDLNLTYRHHKAMHELDF 395 (396)
T ss_dssp HHHHHHHHHHHHHTTCGGGTSCTT
T ss_pred HHHHHHHHHHHHHHcCHHhhccCC
Confidence 289999999999999999998876
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=1.3e-48 Score=386.80 Aligned_cols=297 Identities=19% Similarity=0.255 Sum_probs=202.6
Q ss_pred CCCC-CCceEEEeecCCCCCCCCCcHHHHHhhh-hHHHHcCCCEEEeCCCCCCCC--------CCCCCcccccCCCCCCC
Q 014447 18 LPFT-SPALLFQGFNWESSNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSVA--------PQGYMPGRLYDLDASKY 87 (424)
Q Consensus 18 p~~~-~~~v~~~~f~~ds~~~~~G~~~gi~~~L-~ylk~lGv~~I~l~Pi~~~~~--------~~gY~~~d~~~id~~~~ 87 (424)
|... +++||+|.|.|. +++|++++ +||++||||+||||||++++. +|||++.| |+|| |+|
T Consensus 4 p~~~~g~~~i~~~f~w~--------~~~i~~e~~~yL~~lG~taIwl~P~~e~~~~~~~~~~~y~gY~~~d-Y~v~-~~~ 73 (403)
T d1hx0a2 4 PQTQSGRTSIVHLFEWR--------WVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVS-YKLC-TRS 73 (403)
T ss_dssp CCCCTTCCEEEEETTCC--------HHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSC-SCSC-BTT
T ss_pred CCCCCCCeeEEEeecCc--------HHHHHHHHHHHHHHhCCCEEEeCcCccCccCCCCCCCCceeecCCC-CccC-CCC
Confidence 4444 568999999994 99998876 799999999999999998632 47999999 5799 999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcc-----eeecCC----CCCCCCCCCCCcccccC---CCccCC
Q 014447 88 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGI-----YCIFEG----GTSDDRLDWGPSFICRG---DKEYSD 155 (424)
Q Consensus 88 Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~-----~~~~~~----~~~~~~~~w~~~~~~~~---~~~~~~ 155 (424)
||++|||+||++||++|||||||+|+||++.+++..... +..... ..+.....+........ ...|.+
T Consensus 74 Gt~~dfk~Lv~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (403)
T d1hx0a2 74 GNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFNDGKCKTASGGIESYND 153 (403)
T ss_dssp BCHHHHHHHHHHHHHTTCEEEEEECCSEEEETTCCCBSCBSSCCCBBGGGTBBTTTTBCGGGBCTTTCCSTTSBCCCTTC
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccCcccccccccCCCCCCCCccCCCCcccCCCCCccccCC
Confidence 999999999999999999999999999999887532111 100000 00000000000000000 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcC----------C-CeE
Q 014447 156 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTS----------P-DFA 224 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~----------p-~~~ 224 (424)
. .......+..+||||++||.||+++++++++|++ +||||||+|++++++.++++.+.+..+ + .++
T Consensus 154 ~--~~~~~~~l~~~pDLn~~np~Vr~~~~~~l~~~~~-~GvdGfR~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (403)
T d1hx0a2 154 P--YQVRDCQLVGLLDLALEKDYVRSMIADYLNKLID-IGVAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFI 230 (403)
T ss_dssp H--HHHHHSBGGGEEEBCTTSHHHHHHHHHHHHHHHH-HTCCEEEETTGGGSCHHHHHHHHTTCCCCCTTTSCTTCCCEE
T ss_pred c--cceeeccccccCcccCCCHHHHHHHHHHHHHHHH-cCCCccccccccccCHHHHHHHHHHHHhhCcccccccCCceE
Confidence 0 0001123456899999999999999999999997 999999999999999999999965432 2 468
Q ss_pred EeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcchh---hhhhhhcCCCCCCcCcCCCc
Q 014447 225 VGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGEL---WRLKDSNGKPPGFIGILPQN 301 (424)
Q Consensus 225 v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 301 (424)
++|++..... .. ..+ ...+..++++|.+...+...+.+.. ........ .......+..
T Consensus 231 ~~E~~~~~~~-------~~--------~~~--~~~~~~~~~df~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 291 (403)
T d1hx0a2 231 FQEVIDLGGE-------AI--------KSS--EYFGNGRVTEFKYGAKLGTVVRKWSGEKMSYLKNWG--EGWGFMPSDR 291 (403)
T ss_dssp EECCCCCSSS-------SS--------CGG--GGTTTSEEECHHHHHHHHHHHTTCTTCCGGGGGGTT--GGGTCCCGGG
T ss_pred EEEEeccCcc-------hh--------hcc--cccCCCccccccccchhhHHHhhccchhHHHHHHhc--cccccCCccc
Confidence 9998754220 00 011 1134566788888877777664321 11111111 1111223567
Q ss_pred ceecccCCCCCcCcccCCC------CchhHHHHHHHHHcCC-CeeEEecCCC
Q 014447 302 AVTFIDNHDTGSTQRLWPF------PSDKVMLGYAYILTHP-GTPCIFYDHF 346 (424)
Q Consensus 302 ~~~f~~nHD~~r~~~~~~~------~~~~~~~a~a~~l~~p-G~P~iyyG~~ 346 (424)
+++|++|||++|..+..+. +.+++++|+++||++| |+|+||||.+
T Consensus 292 ~v~Fl~NHD~~R~~~~~~~~~~~~~~~~~~~~a~af~lt~p~G~P~iy~gy~ 343 (403)
T d1hx0a2 292 ALVFVDNHDNQRGHGAGGSSILTFWDARLYKIAVGFMLAHPYGFTRVMSSYR 343 (403)
T ss_dssp EEECSCCTTGGGTCSSCGGGCCCGGGHHHHHHHHHHHHHSCSSEEEEEECBC
T ss_pred eEEecccCCCcccccCCCccccccccHHHHHHHHHHHHHCCCCccceEeeec
Confidence 7999999999998765431 2357899999999999 9999987753
|
| >d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=1.6e-47 Score=393.62 Aligned_cols=196 Identities=18% Similarity=0.204 Sum_probs=149.2
Q ss_pred CCCCCCceEEEeec---CCCCCCCCCcHHH-----------HHhhhhHHHHcCCCEEEeCCCCCCCC-------------
Q 014447 18 LPFTSPALLFQGFN---WESSNKAGGWYNS-----------LKNSIPDLSNAGITHVWLPPPSQSVA------------- 70 (424)
Q Consensus 18 p~~~~~~v~~~~f~---~ds~~~~~G~~~g-----------i~~~L~ylk~lGv~~I~l~Pi~~~~~------------- 70 (424)
|.|+++.||||++. -|+.+++.|+++| ||+||||||+||||+||||||+++++
T Consensus 16 ~~~~~~~viYei~vr~F~d~~~d~~~~~~G~f~~~~~~~~~~i~~LdyL~~LGVtaiwL~Pi~~~~~~d~~~~~~~~~~~ 95 (563)
T d2fhfa5 16 KADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLSASGVTHIELLPVFDLATVNEFSDKVADIQQ 95 (563)
T ss_dssp HHHHHTCEEEEECHHHHHTTCTTSCGGGTTSGGGGGCTTSHHHHHHHHHHHHTCCEEEESCCEEESSSCCCGGGCCCTTS
T ss_pred CCCHHHcEEEEecchhhhccCCCCccccCcChhhccccCcchhhhHHHHHHcCCCEEEeCCcccCCcccccccccccccc
Confidence 45888999999963 1777777766666 99999999999999999999987542
Q ss_pred ----------------------------------------------------------CCCCCcccccCCCCCCCCC---
Q 014447 71 ----------------------------------------------------------PQGYMPGRLYDLDASKYGS--- 89 (424)
Q Consensus 71 ----------------------------------------------------------~~gY~~~d~~~id~~~~Gt--- 89 (424)
+|||+|.||++|+ |+|||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wGYdv~dy~~i~-p~~Gt~~d 174 (563)
T d2fhfa5 96 PFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPE-GSYATDPE 174 (563)
T ss_dssp BHHHHHHHCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBTTBCHHHHHHHHHTTSSSCCCCCCEEEEEEEC-STTSSCCS
T ss_pred ccccccccccccchhhhhhhccccchhhhhhhcccccccchhhhhhcccccccccCcCCCCCChhhccccc-CccCcCcc
Confidence 4699999999999 99999
Q ss_pred ----HHHHHHHHHHH-HHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCC
Q 014447 90 ----QADLKSLIQAF-RQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGE 164 (424)
Q Consensus 90 ----~edl~~Lv~~a-H~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 164 (424)
.+|||+||++| |++|||||||+|+||||.+|+. +.........+..|. . .........
T Consensus 175 ~~~~l~Efk~lV~a~~H~rGIkVIlD~V~NHts~~h~w-----f~~~~~~~~~~~~y~---~---------~~~~~~~~~ 237 (563)
T d2fhfa5 175 GTARIKEFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPT-----DRTSVLDKIVPWYYQ---R---------LNETTGSVE 237 (563)
T ss_dssp TTHHHHHHHHHHHHHHHTSCCEEEEEECTTEESCCSSS-----CTTCCHHHHSTTTSB---C---------BCTTTCCBC
T ss_pred hhhHHHHHHHHHHHHhhccCceeeecCcccccCCCCCc-----hhhcccCCCCCccee---c---------cCCCCCccc
Confidence 78899999987 8999999999999999999863 111000000000000 0 000111122
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC-CeEEeeecCC
Q 014447 165 DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP-DFAVGEKWDS 231 (424)
Q Consensus 165 ~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p-~~~v~E~~~~ 231 (424)
.+.+.+++++++|.++.++.+.+.+|+.++|+||||+|.+..++..++... +....+ ...++|.+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~dg~r~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (563)
T d2fhfa5 238 SATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQILSAWERIKALNPDIYFFGEGWDS 308 (563)
T ss_dssp CTTSSEEBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHTTCTTCEEEECCCCC
T ss_pred CCCCCcccCccchhHHHHHHHhhHHHHhhhcccccchhhhhhcchhhhhhhhHHHhhhCcccccccccccc
Confidence 345677899999999999999999999889999999999999999887766 334455 5678887754
|
| >d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Sucrose phosphorylase species: Bifidobacterium adolescentis [TaxId: 1680]
Probab=100.00 E-value=5.7e-45 Score=358.76 Aligned_cols=177 Identities=16% Similarity=0.081 Sum_probs=130.6
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHH
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~ 99 (424)
++.|+|++|. ||.+ +|||+||++||||||+||||+|||+||++.+ ++|||++.||++|| |+|||++|||+|
T Consensus 2 ~~~~~~~~y~-d~~~--~Gdl~g~~~~Ldyl~~LGv~~I~L~Pi~~~~~~~d~GY~~~Dy~~vd-p~~Gt~~d~k~L--- 74 (434)
T d1r7aa2 2 KNKVQLITYA-DRLG--DGTIKSMTDILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVD-ERLGSWDDVAEL--- 74 (434)
T ss_dssp CSSCEEEECS-SSBS--SSSHHHHHHHHHHHSTTTCCEEEECCCEECSSSSSTTSSCSEEEEEC-TTTCCHHHHHHH---
T ss_pred CCceEEEEec-CCCC--CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCcCcccccccC-cccCCHHHHHHH---
Confidence 6789999999 9876 5999999999999999999999999999843 68999999999999 999999999999
Q ss_pred HHHcCCEEEEeeecccCCCCCCCC--------C----cceeecCCCCCCC------CCCCCCcccccCCCccCCCCCCCC
Q 014447 100 FRQKGIKCLADMVINHRTAERKDG--------R----GIYCIFEGGTSDD------RLDWGPSFICRGDKEYSDGQGNDD 161 (424)
Q Consensus 100 aH~~Gi~VilD~v~NH~~~~~~~~--------~----~~~~~~~~~~~~~------~~~w~~~~~~~~~~~~~~~~~~~~ 161 (424)
++|||||||+|+||||.+|+.. . ..|.......+.. ...+..................+.
T Consensus 75 --~rGi~VIlDvV~NHt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (434)
T d1r7aa2 75 --SKTHNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGIYRPRPGLPFTHYKFAGKTRLV 152 (434)
T ss_dssp --HTTSEEEEEEECSEEETTSHHHHHHHHHGGGSTTGGGBCBHHHHCTTCBCHHHHHTSCCSSSSCSEEEEEETTEEEEE
T ss_pred --HhCCeeeEEecccccccccchhhhhhhccCCCcccccccccCCCCCCccccCCCCcccccCCccccccccccccccee
Confidence 4799999999999999887410 0 0011000000000 000000000000000001122333
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC
Q 014447 162 TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 208 (424)
Q Consensus 162 ~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~ 208 (424)
...+...+|++|+.+|+|++++.+++++|++ .||||||+|+++++.
T Consensus 153 ~~~~~~~~~~ln~~~p~v~~~~~~~~~~w~~-~g~dg~r~d~~~~~~ 198 (434)
T d1r7aa2 153 WVSFTPQQVDIDTDSDKGWEYLMSIFDQMAA-SHVSYIRLDAVGYGA 198 (434)
T ss_dssp ECSSSTTEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEEETGGGSC
T ss_pred eeccccccchhcccchhhhhhhhhHhhhhhc-cCCcccccccccccc
Confidence 4556788999999999999999999999997 999999999998774
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.9e-45 Score=375.37 Aligned_cols=322 Identities=15% Similarity=0.134 Sum_probs=215.2
Q ss_pred ccCCCCCCceEEEeecC---CCCCC--------------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC-------CC
Q 014447 16 IFLPFTSPALLFQGFNW---ESSNK--------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-------AP 71 (424)
Q Consensus 16 ~~p~~~~~~v~~~~f~~---ds~~~--------------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-------~~ 71 (424)
-.|.|++++||||+|.- ++..+ .+|||+||+++|||||+||||+||||||++.+ .+
T Consensus 76 ~~p~w~~~~viYei~v~~F~~~~~~g~~~~~~~~~~g~~~~Gd~~Gi~~kLdYLk~LGvtaI~L~Pi~~~~~~~~~~~~~ 155 (572)
T d1gjwa2 76 KTPDWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLLPFVKSLGADAIYLLPVSRMSDLFKKGDAP 155 (572)
T ss_dssp CSGGGGGGCCEEEECHHHHTCCCTTSSSCCCSBCTTSCBCSCCHHHHHHTHHHHHHHTCCEEEECCCEEECCSSCSSSSC
T ss_pred CCCccccCcEEEEEechhhcCCCCCCCcccccCcccCccCCCCHHHHHHhhHHHHHcCCCEEEeCCcccCccccCCCCCC
Confidence 36899999999999951 22222 25999999999999999999999999999743 47
Q ss_pred CCCCcccccCCCCCC--------CCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCC--CcceeecC------CCCC
Q 014447 72 QGYMPGRLYDLDASK--------YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDG--RGIYCIFE------GGTS 135 (424)
Q Consensus 72 ~gY~~~d~~~id~~~--------~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~--~~~~~~~~------~~~~ 135 (424)
|||++.||+.+| |+ |||++|||+||++||++||+||||+|+|||+.+|+.. ...|+.+. ++.+
T Consensus 156 ~GY~~~dy~~~d-p~~~~~~~~~~Gt~~dfk~lV~~~H~~GI~VIlDvV~NHts~~~~~~~~~~~~~~~~~~~~~~d~~~ 234 (572)
T d1gjwa2 156 SPYSVKNPMELD-ERYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTP 234 (572)
T ss_dssp CTTSEEEEEEEC-GGGSCGGGTTSCHHHHHHHHHHHHHHTTCEEEEEECTTEEETTCGGGTTCGGGSCCEEGGGSTTCCC
T ss_pred CCCCccCCCCCC-cccccccccCCCCHHHHHHHHHHHHhcCcEEEEEeeecccccCCHHHHhCccccccccccccccCCC
Confidence 899999999999 75 7999999999999999999999999999999987521 11222111 1111
Q ss_pred CCCCCCCCccc--------------------ccC-------------------------------------------CCc
Q 014447 136 DDRLDWGPSFI--------------------CRG-------------------------------------------DKE 152 (424)
Q Consensus 136 ~~~~~w~~~~~--------------------~~~-------------------------------------------~~~ 152 (424)
.....+..... +.. ...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgfr~d~~~~~~~~~~~~~~~ 314 (572)
T d1gjwa2 235 PRAEELPFKVPDEDELEIIYNKENVKRHLKKFTLPPNLIDPQKWEKIKREEGNILELIVKEFGIITPPGFSDLINDPQPT 314 (572)
T ss_dssp CCCTTSCSBCCCHHHHHHHHTSHHHHHHHTTBCCCHHHHCHHHHHHHHTCSSCHHHHHHHHHSEECCCBCCSSBTCCSCC
T ss_pred CCCCCCcccCCCCcccccccCCceeeeeccccCCCccccCHHHHHHHHHHhhhHHhcccceeeccccccccccccCCccc
Confidence 10000000000 000 000
Q ss_pred cCC---------C----------C--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHH
Q 014447 153 YSD---------G----------Q--GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSI 211 (424)
Q Consensus 153 ~~~---------~----------~--~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~ 211 (424)
|.+ . . ..............++..++++++++.+.+++|++++|++|+|++.+.+++..+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (572)
T d1gjwa2 315 WDDVTFLRLYLDHPEASKRFLDPNQPPYVLYDVIKASKFPGKEPNRELWEYLAGVIPHYQKKYGIDGARLDMGHALPKEL 394 (572)
T ss_dssp BTTEEECCCBSSCCGGGGGGSCTTCCCCCCHHHHCTTTSCCSSBCHHHHHHHTTHHHHHHHHHCCCEEEESSGGGSCHHH
T ss_pred ccchhhhhhcccCcchhhhhhcccccchhhccchhhcccccccccHHHHHHHhhhhhHHHhhccccchhhhccccCchhH
Confidence 000 0 0 000000001233456777899999999999999999999999999999999999
Q ss_pred HHHHH---HhcCC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh-cchhhhhhh
Q 014447 212 TKVYM---ENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKD 286 (424)
Q Consensus 212 ~~~~~---~~~~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~-~~~~~~~~~ 286 (424)
|+.+. +...+ .++++|...... .+.....+....+.. ...... ........+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~e~~~~~~-------------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 451 (572)
T d1gjwa2 395 LDLIIKNVKEYDPAFVMIAEELDMEK-------------------DKASKEAGYDVILGS----SWYFAGRVEEIGKLPD 451 (572)
T ss_dssp HHHHHHHHHHHCTTCEEEECCCCGGG-------------------HHHHHHHTCSEECCC----HHHHHTCTTTGGGHHH
T ss_pred HHHHHHHHhccCCceEEEeeeccccc-------------------chhhhhcchhhHhcc----chhhHHHHHHHHHHHh
Confidence 98884 45567 558898764211 111111122222222 111111 111111111
Q ss_pred hcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCCC------------------
Q 014447 287 SNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFD------------------ 348 (424)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~~------------------ 348 (424)
... ....+.+++++|||++|..+.......+.++|++++|++||+||||||||++
T Consensus 452 ~~~-------~~~~~~~~~~~nHD~~R~~~~~~~~~~~~~~a~~~l~~~~GiP~iy~GdE~G~~~~~n~~~~~~~~~~~~ 524 (572)
T d1gjwa2 452 IAE-------ELVLPFLASVETPDTPRIATRKYASKMKKLAPFVTYFLPNSIPYVNTGQEIGEKQPMNLGLDTDPNLRKV 524 (572)
T ss_dssp HHH-------TCSSCEEECSCCTTSCCGGGSTTHHHHHHHHHHHHHTSTTEEEEEETTGGGTCCSCSCCCSSCCGGGGGC
T ss_pred hcc-------ccccceeeeccCCCccchhhhcCCHHHHHHHHHHHHHHhcccceeecchhcCCCCCCCCCCCCCcccccC
Confidence 110 0123457899999999998876655667889999999999999999999752
Q ss_pred --------------------c-----chHHHHHHHHHHHHhcCCC
Q 014447 349 --------------------W-----GLKEAISKLAAVRNRNGIN 368 (424)
Q Consensus 349 --------------------w-----~l~~~~~~L~~lR~~~~al 368 (424)
| +++++||+|++|||+||+|
T Consensus 525 ~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~k~Li~lRk~~~~~ 569 (572)
T d1gjwa2 525 LSPTDEFFGKLAFFDHYVLHWDSPDRGVLNFIKKLIKVRHEFLDF 569 (572)
T ss_dssp SCTTSTTTTCCTTTSCCCCCTTSCCHHHHHHHHHHHHHHHHTHHH
T ss_pred CCcccccccccccccccccccccCCHHHHHHHHHHHHHHHhCHHh
Confidence 1 3899999999999999876
|
| >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltooligosyl trehalose synthase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=99.97 E-value=5.4e-33 Score=283.99 Aligned_cols=185 Identities=14% Similarity=0.151 Sum_probs=130.7
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+|||.+++++|||||+|||++|||+||+++. ++|||+++||++|| |+|||++||++||++||++||+||+|+|+||+
T Consensus 13 gftF~~~~~~LpYL~~LGVs~IyLsPi~~a~~gS~HGYDv~D~~~Vd-p~lGt~edf~~LV~aaH~~Gm~VIlDiVpNH~ 91 (653)
T d1iv8a2 13 NFNFGDVIDNLWYFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSRIN-DELGGEKEYRRLIETAHTIGLGIIQDIVPNHM 91 (653)
T ss_dssp TBCHHHHHHTHHHHHHHTCCEEEECCCEEECTTCSSCCSEEEEEEEC-TTTTHHHHHHHHHHHHHHTTCEEEEEECCSEE
T ss_pred CCCHHHHHHhhHHHHHCCCCEEEECccCCCCCCCCCCccccCccccc-hhcCCHHHHHHHHHHHHHCCCEEEEEECCCcc
Confidence 6899999999999999999999999999754 68999999999999 99999999999999999999999999999999
Q ss_pred CCCCCC-------------CCcceeecCCCCC-----CCCCCC----------------------CCccccc-CC-----
Q 014447 117 TAERKD-------------GRGIYCIFEGGTS-----DDRLDW----------------------GPSFICR-GD----- 150 (424)
Q Consensus 117 ~~~~~~-------------~~~~~~~~~~~~~-----~~~~~w----------------------~~~~~~~-~~----- 150 (424)
|.+++. ....|+.+..... ....+| +....+. ..
T Consensus 92 g~d~~~~~~~Dvl~~G~~S~y~~~fdi~~~~~~~~~p~lg~~~~~~l~~g~~~~~~d~~~~~~~~~~~~~P~~~~~~~~~ 171 (653)
T d1iv8a2 92 AVNSLNWRLMDVLKMGKKSKYYTYFDFFPEDDKIRLPILGEDLDTVISKGLLKIVKDGDEYFLEYFKWKLPLTEVGNDIY 171 (653)
T ss_dssp ECCTTCHHHHHHHHHGGGSTTGGGBCBCTTCSSEEEEEESSCHHHHHHTTCEEEEECSSCEEEEETTEEEECSCCCSSHH
T ss_pred cCCcccHHHHHhhhcCCCCCCcccccccCCCCCccCCCCCccchhccCCCcceecCCCCceecccccccCCCCCcCccch
Confidence 987641 1111221111000 000000 0000000 00
Q ss_pred ----------CccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC--CHHHHHHHHHh
Q 014447 151 ----------KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY--APSITKVYMEN 218 (424)
Q Consensus 151 ----------~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~--~~~~~~~~~~~ 218 (424)
..|. ...++........++++|.++|+|.+ ++.++|.+ +||||||+|+++++ |.+||+++.+.
T Consensus 172 ~~~~~q~y~l~~W~-~~~~~~rFfdv~~l~~lr~e~p~Vf~---~v~~~w~e-lGVDGfRID~vd~L~dp~~y~~~lr~~ 246 (653)
T d1iv8a2 172 DTLQKQNYTLMSWK-NPPSYRRFFDVNTLIGVNVEKDHVFQ---ESHSKILD-LDVDGYRIDHIDGLYDPEKYINDLRSI 246 (653)
T ss_dssp HHHTTSSEEEEETT-SCCSBCEETTEEEEEEBCTTSHHHHH---HHTTTGGG-SCCSEEEETTGGGCSCHHHHHHHHHHH
T ss_pred hhhhccccCCCCCC-CCcccccccccccccccccccHHHHH---HHHHHHHH-cCCcEEEeeCcccccCHHHHHHHHHHh
Confidence 0010 11122223334566778888888754 44567776 99999999999999 57899999777
Q ss_pred cCCCeEEeeec
Q 014447 219 TSPDFAVGEKW 229 (424)
Q Consensus 219 ~~p~~~v~E~~ 229 (424)
.++.++++|.+
T Consensus 247 ~~~~~ivvEki 257 (653)
T d1iv8a2 247 IKNKIIIVEKI 257 (653)
T ss_dssp HTTCEEEECCC
T ss_pred cCCCEEEEEee
Confidence 78877666644
|
| >d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=98.45 E-value=2.6e-06 Score=83.65 Aligned_cols=59 Identities=12% Similarity=-0.040 Sum_probs=47.0
Q ss_pred ceEEEeecCCCCCCCCCcH-HHHHhhhhHHHHcCCCEEEeCCCCCCC-----CCCCCCcccccCCC
Q 014447 24 ALLFQGFNWESSNKAGGWY-NSLKNSIPDLSNAGITHVWLPPPSQSV-----APQGYMPGRLYDLD 83 (424)
Q Consensus 24 ~v~~~~f~~ds~~~~~G~~-~gi~~~L~ylk~lGv~~I~l~Pi~~~~-----~~~gY~~~d~~~id 83 (424)
+|++++|...+. -|+||| .++.+-+|.+++.|++.++|+|+.... .+..|++.+-+.+|
T Consensus 28 Gvllh~~SLp~~-~GiGDfG~~a~~fvd~l~~~G~~~wQiLPL~~t~~~~~~~~SPYs~~S~falN 92 (523)
T d1x1na1 28 GILLHPTSFPGP-YGIGDLGPQAFKFLDWLHLAGCSLWQVLPLVPPGKRGNEDGSPYSGQDANCGN 92 (523)
T ss_dssp EEECCGGGSCCT-TSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCBCCSSSCTTCTTSBSCSSSCC
T ss_pred EEEecCccCCCC-CCCCcccHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCCCCcchhcchhcC
Confidence 699999987763 368999 788889999999999999999998742 23467777766655
|
| >d1avaa1 b.71.1.1 (A:347-403) Plant alpha-amylase {Barley (Hordeum vulgare), seeds, AMY2 isozyme [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), seeds, AMY2 isozyme [TaxId: 4513]
Probab=98.31 E-value=8.8e-07 Score=58.39 Aligned_cols=54 Identities=59% Similarity=1.110 Sum_probs=50.0
Q ss_pred CCCeEEEecCCCEEEEEECCEEEEEECCCCCCCCcCCCCcEEEEeCCcEEEEec
Q 014447 370 ASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 423 (424)
Q Consensus 370 ~G~~~~~~~~~~v~~~~r~~~~lv~ln~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (424)
+...+++..+.++++...+++++|-|+...+.++..|++|+++++|.+|+||++
T Consensus 3 ~S~v~I~~Ae~dlY~A~Id~kv~~KIGp~~~~p~~~p~~w~~a~sG~dYaVWek 56 (57)
T d1avaa1 3 ESKLQIIEADADLYLAEIDGKVIVKLGPRYDVGNLIPGGFKVAAHGNDYAVWEK 56 (57)
T ss_dssp TCCEEEEEEETTEEEEEETTTEEEEESSCCCCGGGSCSSEEEEEEETTEEEEEE
T ss_pred CcceEEEEccCCcEEEEeCCeEEEEEcCcccCCCcCCCCcEEEeeCCCEEEEEe
Confidence 456788889999999999999999999999999999999999999999999975
|
| >d1ht6a1 b.71.1.1 (A:348-404) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Probab=98.29 E-value=1e-06 Score=58.24 Aligned_cols=54 Identities=46% Similarity=0.920 Sum_probs=50.3
Q ss_pred CCCeEEEecCCCEEEEEECCEEEEEECCCCCCCCcCCCCcEEEEeCCcEEEEec
Q 014447 370 ASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 423 (424)
Q Consensus 370 ~G~~~~~~~~~~v~~~~r~~~~lv~ln~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (424)
+...+++..+.++++...+++++|-|+...+.++..|.+|+++++|.+|+||++
T Consensus 4 ~S~v~I~~Ae~dlYaA~Id~kv~mKIGp~~d~~~~~p~~w~~a~sG~dYaVWek 57 (57)
T d1ht6a1 4 TSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIPAGFVTSAHGNDYAVWEK 57 (57)
T ss_dssp TCCEEEEEEETTEEEEEETTTEEEEESSCSCCGGGSCTTCEEEEEETTEEEEEC
T ss_pred CceeEEEEcCCCcEEEEeCCeEEEEEeCcccCCCCCCCCcEEEeeCCcEEEEeC
Confidence 466788889999999999999999999999999999999999999999999985
|
| >d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Aquifex aeolicus [TaxId: 63363]
Probab=98.29 E-value=3.3e-06 Score=82.02 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=46.9
Q ss_pred ceEEEeecCCCCCCCCCcH-HHHHhhhhHHHHcCCCEEEeCCCCCCC---CCCCCCcccccCCC
Q 014447 24 ALLFQGFNWESSNKAGGWY-NSLKNSIPDLSNAGITHVWLPPPSQSV---APQGYMPGRLYDLD 83 (424)
Q Consensus 24 ~v~~~~f~~ds~~~~~G~~-~gi~~~L~ylk~lGv~~I~l~Pi~~~~---~~~gY~~~d~~~id 83 (424)
+|..++|...|. -|+||| .++..-++.+++.|++.|+|+|+.... .+..|++.+-+.+|
T Consensus 5 Gvll~~~SLps~-~GIGDfG~~a~~~id~~a~~G~~~~QllPl~~t~~~~~~SPYsp~S~falN 67 (485)
T d1tz7a1 5 GILLHVTSLPSP-YGIGDLGKEAYRFLDFLKECGFSLWQVLPLNPTSLEAGNSPYSSNSLFAGN 67 (485)
T ss_dssp EEECCGGGSCCS-SSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCCCGGGTTCTTSCSCSSSCC
T ss_pred eeeecccccCCC-CCCCCHHHHHHHHHHHHHHcCCCEEEecCCCCCCCCCCCCCcCcccchhcC
Confidence 567777876653 468999 788899999999999999999999743 24667777777766
|
| >d1eswa_ c.1.8.1 (A:) Amylomaltase MalQ {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Thermus aquaticus [TaxId: 271]
Probab=98.09 E-value=5.6e-05 Score=73.58 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=47.4
Q ss_pred ceEEEeecCCCCCCCCCcH-HHHHhhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccccCCC
Q 014447 24 ALLFQGFNWESSNKAGGWY-NSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLD 83 (424)
Q Consensus 24 ~v~~~~f~~ds~~~~~G~~-~gi~~~L~ylk~lGv~~I~l~Pi~~~~-~~~gY~~~d~~~id 83 (424)
+|..|+|...|. -|+||| .++.+-++.+++.|++.++|+|+.+.. .+..|++.+-+.+|
T Consensus 8 Gvllh~~SLp~~-~GiGdfG~~a~~fid~l~~~G~~~wQiLPl~pt~~~~SPYs~~S~fAlN 68 (500)
T d1eswa_ 8 GLLLHPTSLPGP-YGVGVLGREARDFLRFLKEAGGRYWQVLPLGPTGYGDSPYQSFSAFAGN 68 (500)
T ss_dssp EEECCGGGSCCS-SSSCCSSHHHHHHHHHHHHTTCCEEECCCCSCBCTTCCTTSBSCSSCCC
T ss_pred eeEeCccccCCC-CCCcchhHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCcCcccchhcC
Confidence 577788876653 468999 799999999999999999999999743 34577777777776
|
| >d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: YicI catalytic domain-like domain: Alpha-galactosidase GalA catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.73 E-value=7.3e-06 Score=76.75 Aligned_cols=133 Identities=11% Similarity=0.099 Sum_probs=83.3
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~ 120 (424)
+-+.+.+.++.++++|+++|+|=--+.. + ..|+ .+|+.+|. +++.|++.+|++|||+.+-+.+..++..+
T Consensus 21 ~e~~i~~~a~~~~~~g~~~i~iDdgW~~----~--~gd~-~~d~~~FP---glk~l~~~~h~~G~k~gl~~~p~~~~~~s 90 (348)
T d1zy9a2 21 TWEETLKNLKLAKNFPFEVFQIDDAYEK----D--IGDW-LVTRGDFP---SVEEMAKVIAENGFIPGIWTAPFSVSETS 90 (348)
T ss_dssp CHHHHHHHHHHGGGTTCSEEEECTTSEE----E--TTEE-EEECTTCC---CHHHHHHHHHHTTCEEEEEECTTEEETTC
T ss_pred CHHHHHHHHHHHHcCCCcEEEECccccc----C--CCCc-eECcccCc---CHHHHHHHHHhcCCEEEEEeeeccccCCc
Confidence 3566888888899999999998432211 1 1232 34535676 58999999999999999998876554433
Q ss_pred CCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEE
Q 014447 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWR 200 (424)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR 200 (424)
+. +.. .++|............. .......-+|+.+|++++++.+.++.+.+ .|||+|.
T Consensus 91 ~~-------~~~-----~~~~~~~~~~~~~~~~~---------~~~~~~~~lD~~~p~~~~~~~~~~~~~~~-~Gvd~~K 148 (348)
T d1zy9a2 91 DV-------FNE-----HPDWVVKENGEPKMAYR---------NWNKKIYALDLSKDEVLNWLFDLFSSLRK-MGYRYFK 148 (348)
T ss_dssp HH-------HHH-----CGGGBCEETTEECEEEE---------ETTEEEEEBCTTCHHHHHHHHHHHHHHHH-TTCCEEE
T ss_pred HH-------HHh-----CccceeccCCCCccccc---------cCCCCeeccCCCcHHHHHHHHHHHHHHHh-cCCCEEE
Confidence 21 000 01111000000000000 00011223899999999999999999886 9999999
Q ss_pred ecccC
Q 014447 201 FDFVK 205 (424)
Q Consensus 201 ~D~a~ 205 (424)
+|...
T Consensus 149 ~D~~~ 153 (348)
T d1zy9a2 149 IDFLF 153 (348)
T ss_dssp ECCGG
T ss_pred eCCCC
Confidence 99753
|
| >d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: YicI catalytic domain-like domain: Putative glucosidase YicI, domain 2 species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=0.00045 Score=63.77 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=82.2
Q ss_pred HHHHHhhhhHHHHcC--CCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 42 YNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 42 ~~gi~~~L~ylk~lG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
-..+.+.++.+++.| ++.|+|-.-+.. +|...+| ..|+.+|- |.+.||+++|++|+||++-+.+ +++.+
T Consensus 36 ~~~v~~~~~~~r~~~iP~d~i~iD~~w~~----~~~~~~f-~~d~~~FP---dp~~~i~~l~~~G~~~~l~~~P-~i~~~ 106 (338)
T d2f2ha4 36 EATVNSFIDGMAERNLPLHVFHFDCFWMK----AFQWCDF-EWDPLTFP---DPEGMIRRLKAKGLKICVWINP-YIGQK 106 (338)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEECGGGBC----TTCCSSC-CBCTTTCS---CHHHHHHHHHHTTCEEEEEECS-EECTT
T ss_pred HHHHHHHHHHHHHcCCCcceEEEcCchhc----CCCcCce-eeCcccCC---CHHHHHHHHHHCCCeEEEeecC-ccCCC
Confidence 345777788888877 778887543322 2222232 23424454 5799999999999999999876 45544
Q ss_pred CCCC----Ccceeec-CCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 014447 120 RKDG----RGIYCIF-EGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 194 (424)
Q Consensus 120 ~~~~----~~~~~~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~ 194 (424)
++.. ...+..- .++.+. ......+...-+|+.||++++...+.++...+ .
T Consensus 107 ~~~~~~~~~~g~~~~~~~g~~~------------------------~~~~~~~~~~~~D~tnp~a~~w~~~~~~~~~~-~ 161 (338)
T d2f2ha4 107 SPVFKELQEKGYLLKRPDGSLW------------------------QWDKWQPGLAIYDFTNPDACKWYADKLKGLVA-M 161 (338)
T ss_dssp STTHHHHHHHTCBCBCTTSSBC------------------------CBSSSSTTBEEBCTTSHHHHHHHHHHHHHHHH-T
T ss_pred ChhHHHHHhCCEEEECCCCCce------------------------eeecCCCCccccccCCHHHHHHHHHHhhcccc-c
Confidence 4310 0011100 000000 00011122234799999999999999999887 9
Q ss_pred CCCeEEecccCCC
Q 014447 195 GFDGWRFDFVKGY 207 (424)
Q Consensus 195 gvDGfR~D~a~~~ 207 (424)
|||||-+|.-...
T Consensus 162 Gidg~w~D~~e~~ 174 (338)
T d2f2ha4 162 GVDCFKTDFGERI 174 (338)
T ss_dssp TCCEEEECCCCCC
T ss_pred CCceEEecCCCCC
Confidence 9999999987654
|
| >d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Outer surface protein, N-terminal domain domain: Outer surface protein, N-terminal domain species: Bacillus cereus [TaxId: 1396]
Probab=96.84 E-value=0.0013 Score=56.95 Aligned_cols=61 Identities=11% Similarity=0.139 Sum_probs=42.1
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
++....+.|+..++.|++.|+.+= -.+..+.--..+.|++|++.||+.||+||+|+.++-.
T Consensus 15 ~~e~~~~yi~~a~~~Gf~~iFTSL---------------~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l 75 (244)
T d1x7fa2 15 TKEKDMAYISAAARHGFSRIFTCL---------------LSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAVF 75 (244)
T ss_dssp CHHHHHHHHHHHHTTTEEEEEEEE---------------CCC--------HHHHHHHHHHHHTTCEEEEEECTTCC
T ss_pred CHHHHHHHHHHHHHCCCCEEEecC---------------ccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCHHHH
Confidence 456666777777889999999742 1111011112567999999999999999999998744
|
| >d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=96.79 E-value=0.00064 Score=62.62 Aligned_cols=68 Identities=12% Similarity=-0.003 Sum_probs=44.1
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
+-..+.+.|+.+|++|+|+|-+........ ..+.+. --..| ....+.|+++++.|.++||+||+|+..
T Consensus 37 ~~~~~~~~l~~~k~~G~N~vR~~~~~~~~~-~~~~~~-~g~~~---~~~l~~ld~~l~~a~~~Gi~vi~~l~~ 104 (370)
T d1rh9a1 37 TRIKVTNTFQQASKYKMNVARTWAFSHGGS-RPLQSA-PGVYN---EQMFQGLDFVISEAKKYGIHLIMSLVN 104 (370)
T ss_dssp TTHHHHHHHHHHHHTTCCEEEEESSCSSSS-SCSEEE-TTEEC---HHHHHHHHHHHHHHHHTTCEEEEECCB
T ss_pred CHHHHHHHHHHHHHCCCeEEEECCccCccC-cccCCC-CCccc---HHHHHHHHHHHHHHHHcCCEEEEeccc
Confidence 445677889999999999998743211110 000000 00011 113678999999999999999999863
|
| >d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endocellulase E1 species: Acidothermus cellulolyticus [TaxId: 28049]
Probab=96.39 E-value=0.0046 Score=56.64 Aligned_cols=87 Identities=16% Similarity=0.340 Sum_probs=53.7
Q ss_pred CCceEEEeecCCCCCCC----CC-cHHHHHhhhhHHHHcCCCEEEeCCCCCC---CCCCCCCcccccCCCCCC-C--CCH
Q 014447 22 SPALLFQGFNWESSNKA----GG-WYNSLKNSIPDLSNAGITHVWLPPPSQS---VAPQGYMPGRLYDLDASK-Y--GSQ 90 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~----~G-~~~gi~~~L~ylk~lGv~~I~l~Pi~~~---~~~~gY~~~d~~~id~~~-~--Gt~ 90 (424)
++.+.++..+|-..... .| +-..+.+-++.||++|+|+|-| |+.-. +....+... .++.+ +. + ...
T Consensus 18 G~~~~l~GvN~~g~~~~~~~~~~~~~~~~~~~~~~i~~~G~N~VRl-pv~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~ 94 (358)
T d1ecea_ 18 NVPVRIAGINWFGFETCNYVVHGLWSRDYRSMLDQIKSLGYNTIRL-PYSDDILKPGTMPNSIN-FYQMN-QDLQGLTSL 94 (358)
T ss_dssp SCEECCEEEECCCBTTTTCSCTTTTTSCHHHHHHHHHHTTCCEEEE-EEEGGGGSTTCCCCSCC-CSSSC-TTTTTCCHH
T ss_pred CCEEEEEEEccCcccccccccccCCccHHHHHHHHHHHcCCCEEEe-cCcHHHccCCCCCCCcc-ccccC-hhhhchhHH
Confidence 45677777765211110 11 2233667799999999999998 43211 111111111 22344 32 2 347
Q ss_pred HHHHHHHHHHHHcCCEEEEee
Q 014447 91 ADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 91 edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+.|+++|+.|+++||+||||+
T Consensus 95 ~~ld~~v~~a~~~Gl~Vildl 115 (358)
T d1ecea_ 95 QVMDKIVAYAGQIGLRIILDR 115 (358)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHCCCceeeec
Confidence 889999999999999999998
|
| >d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Bacillus licheniformis [TaxId: 1402]
Probab=96.36 E-value=0.005 Score=57.55 Aligned_cols=56 Identities=18% Similarity=0.113 Sum_probs=40.1
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEee
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG--SQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G--t~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+-++.||+.|||+|-| |++-.+..+...+ +..| .++.++++++.||++||+||+|+
T Consensus 42 d~~~~lk~~G~n~VRl-~vw~~~~~~~~~~--------~~~g~~~l~~~~~~~~~a~~~Gl~v~ldl 99 (387)
T d1ur4a_ 42 DIFKTLKEAGVNYVRV-RIWNDPYDANGNG--------YGGGNNDLEKAIQIGKRATANGMKLLADF 99 (387)
T ss_dssp CHHHHHHHTTCCEEEE-EECSCCBCTTCCB--------CSTTCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHcCCCEEEe-ecccCCcccccCc--------CCCccccHHHHHHHHHHHHHCCCEEEEEe
Confidence 3478999999999996 4544332221111 1112 38899999999999999999998
|
| >d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Trichoderma reesei [TaxId: 51453]
Probab=96.14 E-value=0.0045 Score=56.24 Aligned_cols=73 Identities=12% Similarity=0.077 Sum_probs=47.0
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCC-------CHHHHHHHHHHHHHcCCEEEEeee
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG-------SQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G-------t~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
.+-..+...|+.+|++|+|+|-+.-..+....+-+....+..++ ...| ..+.+++++++|+++||+||+|+.
T Consensus 33 ~~~~~~~~~l~~~~~~G~N~iR~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ld~~~~~a~~~Gi~vi~~l~ 111 (344)
T d1qnra_ 33 TNHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQIWFQKLS-ATGSTINTGADGLQTLDYVVQSAEQHNLKLIIPFV 111 (344)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECCCCCEESSCCSTTCCCSEECC-TTCCEECCSTTTTHHHHHHHHHHHHHTCEEEEESC
T ss_pred CCHHHHHHHHHHHHhcCCCEEEECCcccccccCCCCccchhhcc-cccCccccCHHHHHHHHHHHHHHHHcCCeeEeecc
Confidence 55677888899999999999987322211111111111111222 1111 367899999999999999999987
Q ss_pred c
Q 014447 113 I 113 (424)
Q Consensus 113 ~ 113 (424)
.
T Consensus 112 ~ 112 (344)
T d1qnra_ 112 N 112 (344)
T ss_dssp B
T ss_pred C
Confidence 4
|
| >d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Yeast (Candida albicans) [TaxId: 5476]
Probab=96.09 E-value=0.031 Score=52.07 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=38.0
Q ss_pred hhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDAS-KYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 49 L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~-~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
++.||++|+|+|-| ||.- +-+...+ -+ + .-+..+.|+++|+.|.++||+||||+
T Consensus 74 ~~~i~~~G~N~VRi-Pv~~----~~~~~~~---~~-~~~~~~~~~ld~~i~~a~~~gl~VilDl 128 (394)
T d2pb1a1 74 FKQISNLGLNFVRI-PIGY----WAFQLLD---ND-PYVQGQVQYLEKALGWARKNNIRVWIDL 128 (394)
T ss_dssp HHHHHHTTCCEEEE-EEEG----GGTCCCT---TC-CCCCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHCCCCEEEE-EecH----HHhcCCC---CC-ccchhHHHHHHHHHHHHHHCCcEEEEEe
Confidence 78999999999999 5421 0011110 01 1 11347889999999999999999998
|
| >d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase CelC species: Clostridium thermocellum [TaxId: 1515]
Probab=96.04 E-value=0.012 Score=53.75 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=37.9
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCccc-ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGR-LYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d-~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+-++.||++|+|+|-| ||.-. .+.+.+ -..++ + +..+.|+++|+.|+++||+||||+
T Consensus 32 ~d~~~i~~~G~n~vRl-pi~~~----~~~~~~~~~~~~-~--~~~~~ld~~v~~a~~~gi~vild~ 89 (340)
T d1ceoa_ 32 KDIETIAEAGFDHVRL-PFDYP----IIESDDNVGEYK-E--DGLSYIDRCLEWCKKYNLGLVLDM 89 (340)
T ss_dssp HHHHHHHHHTCCEEEE-EEEGG----GTBCSSSTTCBC-H--HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHcCCCEEEe-ecCHH----HhccCCCCCccC-H--HHHHHHHHHHHHHHHcCCEEEEEe
Confidence 4588999999999998 44210 000000 00111 1 125679999999999999999998
|
| >d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exomannosidase species: Cellvibrio mixtus [TaxId: 39650]
Probab=96.03 E-value=0.0075 Score=55.62 Aligned_cols=70 Identities=11% Similarity=0.191 Sum_probs=48.3
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCC-----HHHHHHHHHHHHHcCCEEEEeeec
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGS-----QADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt-----~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.+-..+.+.|+.||++|+|+|-+....+... +....+..+. +..|. .+.+.+++++|+++||+||+|+..
T Consensus 38 ~~~~~~~~~l~~~k~~G~N~iR~~~~~~~~~---~~~~~~~~~~-~~~g~~de~gl~~~d~~l~~a~~~Gi~vi~~l~~ 112 (410)
T d1uuqa_ 38 GDRDRLAKELDNLKAIGVNNLRVLAVSEKSE---INSAVKPAVT-NGFGNYDETLLQGLDYLLVELAKRDMTVVLYFNN 112 (410)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCCBCCC---STTSCSSCSB-SSTTCBCHHHHHHHHHHHHHHHHTTCEEEEECCB
T ss_pred CCHHHHHHHHHHHHHCCCcEEEeCCcccccc---cccccCCCcc-cccccccHHHHHHHHHHHHHHHHcCCeeEEeccc
Confidence 4667788889999999999998743322211 1111122333 44443 567899999999999999999963
|
| >d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: endo-1,4-beta-mannosidase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=95.49 E-value=0.01 Score=53.26 Aligned_cols=64 Identities=14% Similarity=0.265 Sum_probs=42.5
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCCCCC-----CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPSQSV-----APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~~~~-----~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
..+.+.|++||++|+|+|-+....... ...+. ...++ + ...+.+++++++|+++||+||+|+.-
T Consensus 42 ~~~~~~l~~~~~~G~N~vRv~~~~~~~~~~~~~~~~~----~~~~~-~--~~~~~~d~~~~~a~~~gi~vi~d~~~ 110 (350)
T d2c0ha1 42 STFESTLSDMQSHGGNSVRVWLHIEGESTPEFDNNGY----VTGID-N--TLISDMRAYLHAAQRHNILIFFTLWN 110 (350)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSC----EEECC-T--THHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEECcccCccCCcccccCCC----CCccC-h--hhhHHHHHHHHHHHHCCCEEEEEecc
Confidence 345667899999999999873211111 11111 11122 2 23789999999999999999999843
|
| >d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Fungus (Aspergillus aculeatus) [TaxId: 5053]
Probab=95.48 E-value=0.018 Score=52.48 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=40.8
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
+.++.||+.||++|-|- ++-.|. +..-+.+.++++++.|+++||+|++|+...
T Consensus 31 d~~~~lk~~G~n~VRlr-vW~~p~--------------~g~~~~~~~~~~~~~a~~~Gm~vll~~hys 83 (334)
T d1foba_ 31 ALETILADAGINSIRQR-VWVNPS--------------DGSYDLDYNLELAKRVKAAGMSLYLDLHLS 83 (334)
T ss_dssp CHHHHHHHHTCCEEEEE-ECSCCT--------------TCTTCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cHHHHHHHcCCCEEEee-eeeCCC--------------CCcCcHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 45678899999999975 553221 112258899999999999999999999554
|
| >d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.45 E-value=0.041 Score=51.45 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=37.3
Q ss_pred hhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEee
Q 014447 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG--SQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 49 L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G--t~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+++||++|+|+|-|+ |. ++.+.+ ..-+ +.+. ..+-|+++|+.|.++||+||||+
T Consensus 79 ~~~i~~~G~N~VRiP-i~----~~~~~~---~~~~-~~~~~~~~~~ld~~v~~a~~~gl~VilDl 134 (408)
T d1h4pa_ 79 FANIASQGFNLVRIP-IG----YWAFQI---LDDD-PYVSGLQESYLDQAIGWARNNSLKVWVDL 134 (408)
T ss_dssp HHHHHHTTCCEEEEE-EE----GGGTCC---CTTC-CCCCSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHCCCCEEEEe-cc----HHHhcC---CCCC-CCcChhHHHHHHHHHHHHHHCCCEEEEEe
Confidence 789999999999985 21 111111 1112 2222 25679999999999999999997
|
| >d1j0ha2 b.71.1.1 (A:506-588) Neopullulanase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Neopullulanase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.33 E-value=0.021 Score=40.38 Aligned_cols=53 Identities=9% Similarity=0.119 Sum_probs=36.6
Q ss_pred CCeEEEecCC--CEEEEEE---CCEEEEEECCCCCC-----CC-c----------------CCCCcEEEEeCCcEEEEec
Q 014447 371 SRVNILASDA--DVYIAAI---GDRVIMKIGPKMDI-----GN-L----------------IPSDFKVAADGTDYAVWEK 423 (424)
Q Consensus 371 G~~~~~~~~~--~v~~~~r---~~~~lv~ln~~~~~-----~~-~----------------~~~~~~~~~~~~~~~~~~~ 423 (424)
|.++++..++ +++||.| ++++||++|.+... +. . ..+..++.++..++.||++
T Consensus 1 G~~~~l~~~d~~~v~ay~R~~~~~~vLVv~N~S~~~~~v~lp~~~~~~~~~~l~~~~~~~~~~~~~~ltL~Py~~~i~~~ 80 (83)
T d1j0ha2 1 GEISFLHADDEMNYLIYKKTDGDETVLVIINRSDQKADIPIPLDARGTWLVNLLTGERFAAEAETLCTSLPPYGFVLYAI 80 (83)
T ss_dssp CEEEEECCSCTTTEEEEEEECSSCEEEEEEECSSSCEEEECCCCCSSEEEEETTTCCEEECCSSSCEEEECTTCEEEEEE
T ss_pred CceEEEecCCCCCEEEEEEECCCCEEEEEEeCCCCCEEEEccCccccCcEEEecCCccccccCCceEEEECCcEEEEEEE
Confidence 6788887643 6999999 78999999986431 10 0 0114567888888888754
|
| >d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]
Probab=95.32 E-value=0.011 Score=53.45 Aligned_cols=50 Identities=12% Similarity=0.009 Sum_probs=38.9
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+-++.||+.||++|-|. ++..|. ......+.++++|++|+++||+||+|+
T Consensus 31 ~~~~~lk~~G~n~VRi~-vW~~p~--------------~g~~~~~~~~~~v~~a~~~gl~vil~~ 80 (332)
T d1hjsa_ 31 PLENILAANGVNTVRQR-VWVNPA--------------DGNYNLDYNIAIAKRAKAAGLGVYIDF 80 (332)
T ss_dssp CHHHHHHHTTCCEEEEE-ECSSCT--------------TCTTSHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHcCCCEEEee-eeecCC--------------CCccCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45678999999999984 552211 112248899999999999999999997
|
| >d1wzla2 b.71.1.1 (A:503-585) Maltogenic amylase {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Maltogenic amylase species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=94.89 E-value=0.011 Score=42.07 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=24.2
Q ss_pred CCeEEEecC--CCEEEEEE---CCEEEEEECCCCC
Q 014447 371 SRVNILASD--ADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 371 G~~~~~~~~--~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
|.++.+..+ .+++||.| +++++|++|++..
T Consensus 1 G~~~~l~ad~~~~v~af~R~~~~e~vlVv~N~s~~ 35 (83)
T d1wzla2 1 GNVRSWHADKQANLYAFVRTVQDQHVGVVLNNRGE 35 (83)
T ss_dssp CEEEEEEEETTTTEEEEEEEETTEEEEEEEECSSS
T ss_pred CceEEEEECCCCCEEEEEEECCCCEEEEEEECCCc
Confidence 677777654 57999999 7899999999754
|
| >d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Bacillus sp. JAMB-602 [TaxId: 244966]
Probab=94.80 E-value=0.021 Score=50.63 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=40.4
Q ss_pred HHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
...+-++.||++|+|+|-| |+... + .+.- +..+.|+++|+.|.++||+||+|+-
T Consensus 33 ~~~~d~~~~~~~G~N~VRl-~~~~~----~-----~~~~-----~~~~~ld~~v~~a~~~Gi~vildlh 86 (297)
T d1wkya2 33 QATTAIEGIANTGANTVRI-VLSDG----G-----QWTK-----DDIQTVRNLISLAEDNNLVAVLEVH 86 (297)
T ss_dssp GHHHHHHHHHTTTCSEEEE-EECCS----S-----SSCC-----CCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHCCCcEEEE-eccCC----C-----ccCc-----cHHHHHHHHHHHHHHCCCceEeecc
Confidence 3556789999999999987 33221 1 1111 2478899999999999999999984
|
| >d1jaea1 b.71.1.1 (A:379-471) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Probab=94.77 E-value=0.0076 Score=43.38 Aligned_cols=43 Identities=12% Similarity=0.168 Sum_probs=30.0
Q ss_pred eEEEecCCCEEEEEECCEEEEEECCCCCCCCcCCCCcEEEEeCCcEE
Q 014447 373 VNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYA 419 (424)
Q Consensus 373 ~~~~~~~~~v~~~~r~~~~lv~ln~~~~~~~~~~~~~~~~~~~~~~~ 419 (424)
..|....++.+||.|+++.+|++|+..+ ....+.+.++++.||
T Consensus 5 ~nWwdng~nqIAF~RG~kGFvAiN~~~~----l~~t~qTgLPaG~YC 47 (93)
T d1jaea1 5 ENWWSNDDNQIAFSRGSQGFVAFTNGGD----LNQNLNTGLPAGTYC 47 (93)
T ss_dssp EEEEECSSSEEEEEETTTEEEEEESSSC----EEEEEECCCCSEEEE
T ss_pred cccEECCCcEEEEecCCCcEEEEeCCcc----cceeEecCCCCccee
Confidence 4566677889999999999999998433 222455555555554
|
| >d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: A4 beta-galactosidase species: Thermus thermophilus [TaxId: 274]
Probab=94.69 E-value=0.022 Score=51.39 Aligned_cols=57 Identities=19% Similarity=0.249 Sum_probs=41.0
Q ss_pred HHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCC--HHHHHHHHHHHHHcCCEEEEeeec
Q 014447 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGS--QADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt--~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
-..+-|+.+|++|+|+|-+.-+- ...|. |.=|. .+.+.++|++|+++||+||+.+..
T Consensus 15 ~~~~D~~~~~~~G~n~vR~~i~~------------W~~ie-p~~G~~~~~~~d~~i~~~~~~Gi~~iv~l~~ 73 (393)
T d1kwga2 15 RWKEDARRMREAGLSHVRIGEFA------------WALLE-PEPGRLEWGWLDEAIATLAAEGLKVVLGTPT 73 (393)
T ss_dssp HHHHHHHHHHHHTCCEEEECTTC------------HHHHC-SBTTBCCCHHHHHHHHHHHTTTCEEEEECST
T ss_pred HHHHHHHHHHHcCCCEEEecccc------------hhhcC-CCCCccCHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 45677999999999999976420 11122 21111 468999999999999999998853
|
| >d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase CelA species: Clostridium cellulolyticum [TaxId: 1521]
Probab=94.57 E-value=0.0099 Score=55.20 Aligned_cols=57 Identities=12% Similarity=0.256 Sum_probs=40.1
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+-++.||++||++|-|+ |. ...+....-+.+| +.+ ++.++++|+.|+++||+||||+
T Consensus 65 ~~i~~ik~~Gfn~vRiP-v~----w~~~~~~~~~~i~-~~~--l~~v~~vV~~a~~~Gl~VIldl 121 (380)
T d1edga_ 65 QMIDAIKQKGFNTVRIP-VS----WHPHVSGSDYKIS-DVW--MNRVQEVVNYCIDNKMYVILNT 121 (380)
T ss_dssp HHHHHHHHHTCCEEEEC-CC----CGGGEETTTTEEC-HHH--HHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHHHHcCCCEEEEc-cc----HHHhcCCCCCccC-HHH--HHHHHHHHHHHHHcCCEEEEec
Confidence 45899999999999994 42 1111111113445 332 5779999999999999999997
|
| >d1cxla3 b.71.1.1 (A:407-496) Cyclodextrin glycosyltransferase {Bacillus circulans, different strains [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Cyclodextrin glycosyltransferase species: Bacillus circulans, different strains [TaxId: 1397]
Probab=94.57 E-value=0.011 Score=42.56 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=24.8
Q ss_pred CCeEEEecCCCEEEEEE---CCEEEEEECCCC
Q 014447 371 SRVNILASDADVYIAAI---GDRVIMKIGPKM 399 (424)
Q Consensus 371 G~~~~~~~~~~v~~~~r---~~~~lv~ln~~~ 399 (424)
|.++.+..++++++|+| ++.+||++|++.
T Consensus 1 G~~~~rw~~~DvyvyeR~~g~~~vlVAiNr~~ 32 (90)
T d1cxla3 1 GSTQERWINNDVLIYERKFGSNVAVVAVNRNL 32 (90)
T ss_dssp CEEEEEEECSSEEEEEEEETTEEEEEEEECCS
T ss_pred CccEEEEECCCEEEEEEEcCCCEEEEEEECCC
Confidence 56777889999999999 789999999753
|
| >d1hx0a1 b.71.1.1 (A:404-496) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.44 E-value=0.01 Score=42.75 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=21.8
Q ss_pred EEEecCCCEEEEEECCEEEEEECCC
Q 014447 374 NILASDADVYIAAIGDRVIMKIGPK 398 (424)
Q Consensus 374 ~~~~~~~~v~~~~r~~~~lv~ln~~ 398 (424)
.|....++.+||.|+++.+|++|+.
T Consensus 5 nWwdng~nqIAF~RG~kGFvAiNn~ 29 (93)
T d1hx0a1 5 NWWDNGSNQVAFGRGNRGFIVFNND 29 (93)
T ss_dssp EEEECSSSEEEEEETTTEEEEEECS
T ss_pred ceEeCCCcEEEEecCCCcEEEEeCC
Confidence 5666777899999999999999994
|
| >d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase homologue TM1752 species: Thermotoga maritima [TaxId: 2336]
Probab=94.17 E-value=0.038 Score=49.44 Aligned_cols=58 Identities=10% Similarity=0.070 Sum_probs=38.5
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+-++.||++|+|+|-|.=-...-... .+...++ + ...+-++++|++|.++||+||||+
T Consensus 24 ~d~~~l~~~G~n~vRlpv~~~~~~~~----~~~~~~~-~--~~l~~ld~~v~~~~~~gi~vildl 81 (325)
T d1vjza_ 24 EDFLWMAQWDFNFVRIPMCHLLWSDR----GNPFIIR-E--DFFEKIDRVIFWGEKYGIHICISL 81 (325)
T ss_dssp HHHHHHHHTTCCEEEEEEEGGGTSCS----SCTTCCC-G--GGHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHcCCCEEEecccHHHccCC----CCCCccC-H--HHHHHHHHHHHHHHHcCCcEEEee
Confidence 44889999999999984111100000 0111222 2 137789999999999999999997
|
| >d1h1na_ c.1.8.3 (A:) Endocellulase EngI {Thermoascus aurantiacus [TaxId: 5087]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endocellulase EngI species: Thermoascus aurantiacus [TaxId: 5087]
Probab=93.88 E-value=0.03 Score=50.12 Aligned_cols=56 Identities=25% Similarity=0.248 Sum_probs=39.4
Q ss_pred HhhhhHHHHcCCCEEEeCCCCC---CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQ---SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~---~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
.+.+++||++|+|+|-|+ |.- .+...++ .++ + ...+.++++|+.|.++||+||||+
T Consensus 34 ~~di~~l~~~G~N~VRlP-v~~~~~~~~~~~~------~~~-~--~~~~~l~~~v~~a~~~gl~vIlD~ 92 (305)
T d1h1na_ 34 PNTIDTLISKGMNIFRVP-FMMERLVPNSMTG------SPD-P--NYLADLIATVNAITQKGAYAVVDP 92 (305)
T ss_dssp HHHHHHHHHTTCCEEEEE-ECHHHHSCSSTTS------CCC-H--HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCCEEEee-eeHHHhccCCCCC------ccC-H--HHHHHHHHHHHHHHhcCCeEEEec
Confidence 356899999999999984 321 1111111 122 2 126789999999999999999997
|
| >d3bmva3 b.71.1.1 (A:407-495) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Probab=93.86 E-value=0.017 Score=41.36 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=24.8
Q ss_pred CCeEEEecCCCEEEEEE---CCEEEEEECCCC
Q 014447 371 SRVNILASDADVYIAAI---GDRVIMKIGPKM 399 (424)
Q Consensus 371 G~~~~~~~~~~v~~~~r---~~~~lv~ln~~~ 399 (424)
|.++.+..++++++|.| +..+||++|++.
T Consensus 1 G~~~~~~in~DvyvyeR~~~~~~vlVAiNr~~ 32 (89)
T d3bmva3 1 GTTQQRWINNDVYIYERKFGNNVALVAINRNL 32 (89)
T ss_dssp CEEEEEEECSSEEEEEEEETTEEEEEEEECCS
T ss_pred CceeEEEECCCEEEEEEecCCcEEEEEEECCC
Confidence 56777889999999999 779999999864
|
| >d1edta_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Streptomyces plicatus, endoglycosidase H [TaxId: 1922]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Endo-beta-N-acetylglucosaminidase species: Streptomyces plicatus, endoglycosidase H [TaxId: 1922]
Probab=93.59 E-value=0.088 Score=45.96 Aligned_cols=64 Identities=22% Similarity=0.301 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA 169 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (424)
.+++.+.|+.||++||||+|-+==+|.+.. .
T Consensus 64 ~~~~~~~i~~l~~~g~KvllsiGG~~~~~~-------------------------------------------------f 94 (265)
T d1edta_ 64 LDNAVTQIRPLQQQGIKVLLSVLGNHQGAG-------------------------------------------------F 94 (265)
T ss_dssp HHTHHHHTHHHHHTTCEEEEEEEECTTSCC-------------------------------------------------T
T ss_pred hhhHHHHHHHHHhCCCEEEEEEccCcCCCC-------------------------------------------------c
Confidence 446778899999999999988733222110 0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014447 170 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (424)
Q Consensus 170 ~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (424)
-+..+++-|+.+.+.+..+++++|.||+-+|--
T Consensus 95 --~~~~s~~~~~~Fa~~~~~~~~~~~~DGiDiD~E 127 (265)
T d1edta_ 95 --ANFPSQQAASAFAKQLSDAVAKYGLDGVDFDDE 127 (265)
T ss_dssp --TCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECS
T ss_pred --eecCCHHHHHHHHHHHHHHHHhcCCCceEeccc
Confidence 123467888888888888888899999999964
|
| >d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Thermomonospora fusca [TaxId: 2021]
Probab=93.59 E-value=0.052 Score=48.08 Aligned_cols=52 Identities=15% Similarity=0.267 Sum_probs=38.6
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
.+.++.||++|+|+|-|. +... ... .....+.++++|+.|.++||+||+|+-
T Consensus 35 ~~~~~~i~~~G~N~VRl~-~~~~------------~~~--~~~~~~~~~~~v~~a~~~Gi~vildlh 86 (302)
T d1bqca_ 35 TQAFADIKSHGANTVRVV-LSNG------------VRW--SKNGPSDVANVISLCKQNRLICMLEVH 86 (302)
T ss_dssp TTHHHHHHHTTCSEEEEE-ECCS------------SSS--CCCCHHHHHHHHHHHHHTTCEEEEEEG
T ss_pred HHHHHHHHhcCCCEEEEe-cccc------------ccc--CcchHHHHHHHHHHHHHCCCEEEEEec
Confidence 456889999999999973 2100 001 112478899999999999999999983
|
| >d1g94a1 b.71.1.1 (A:355-448) Bacterial alpha-Amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Bacterial alpha-Amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Probab=93.51 E-value=0.017 Score=41.63 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=29.2
Q ss_pred eEEEecCCCEEEEEECCEEEEEECCCCCCCCcCCCCcEEEEeCCcEE
Q 014447 373 VNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYA 419 (424)
Q Consensus 373 ~~~~~~~~~v~~~~r~~~~lv~ln~~~~~~~~~~~~~~~~~~~~~~~ 419 (424)
..|....++.+||.|+++.+|++|+... .....+.+.++++.||
T Consensus 5 ~nWwdng~nqIAF~RG~kGFvAiN~~~~---~~~~t~~TgLPaG~YC 48 (94)
T d1g94a1 5 TNWWDNTNNQISFGRGSSGHMAINKEDS---TLTATVQTDMASGQYC 48 (94)
T ss_dssp EEEEECSSSEEEEECGGGEEEEEECSSS---CBCCEEECCSCSEEEE
T ss_pred eccEECCCcEEEEecCCCcEEEEeCCCC---ceeEEEEccCCCceee
Confidence 3566677789999999999999998421 1222444444544443
|
| >d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Alkaline cellulase K catalytic domain species: Bacillus sp. [TaxId: 1409]
Probab=93.41 E-value=0.042 Score=50.20 Aligned_cols=53 Identities=15% Similarity=0.091 Sum_probs=39.2
Q ss_pred hhhhHHH-HcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 47 NSIPDLS-NAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 47 ~~L~ylk-~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+.++.|+ ++|+|+|-| |+.. .. .-+..+ |.+ .+.+++.|+.|.++||+||||+
T Consensus 55 ~~~~~l~~~~G~N~VRl-p~~~-------~~-~~~~~~-~~~--~~~ld~~V~~a~~~GiyVIlD~ 108 (357)
T d1g01a_ 55 NAFVALSNDWGSNMIRL-AMYI-------GE-NGYATN-PEV--KDLVYEGIELAFEHDMYVIVDW 108 (357)
T ss_dssp HHHHHHHTTSCCSEEEE-EEES-------SS-SSTTTC-TTH--HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHhcCCCEEEE-eeee-------cC-CCCccC-HHH--HHHHHHHHHHHHHCCCEEEEee
Confidence 4467776 489999998 3321 11 124456 543 7889999999999999999997
|
| >d1cyga3 b.71.1.1 (A:403-491) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.00 E-value=0.048 Score=38.86 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=25.3
Q ss_pred CCeEEEecCCCEEEEEE---CCEEEEEECCCCC
Q 014447 371 SRVNILASDADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 371 G~~~~~~~~~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
|.++.+..++++++|+| ++.+||++|.+.+
T Consensus 1 Gs~~~rwi~~DvyvyeR~fg~~~vlVAiNr~~~ 33 (89)
T d1cyga3 1 GDTEQRWINGDVYVYERQFGKDVVLVAVNRSSS 33 (89)
T ss_dssp CEEEEEEECSSEEEEEEEETTEEEEEEEECCSS
T ss_pred CceeEEEECCCEEEEEEecCCcEEEEEEECCCC
Confidence 56777889999999999 7899999998643
|
| >d7a3ha_ c.1.8.3 (A:) Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId: 76935]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase Cel5a species: Bacillus agaradhaerens [TaxId: 76935]
Probab=92.43 E-value=0.074 Score=47.16 Aligned_cols=53 Identities=21% Similarity=0.134 Sum_probs=38.1
Q ss_pred hhhhHHH-HcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 47 NSIPDLS-NAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 47 ~~L~ylk-~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+.++.|+ ++|+|+|-+. +... .. .+..| |.+ .+.++++|+.|.++||.||+|+
T Consensus 44 ~~~~~l~~~~G~N~VR~~-~~~~--~~------~~~~~-~~~--~~~ld~~v~~a~~~Gl~Vild~ 97 (300)
T d7a3ha_ 44 ESMKWLRDDWGINVFRAA-MYTS--SG------GYIDD-PSV--KEKVKEAVEAAIDLDIYVIIDW 97 (300)
T ss_dssp HHHHHHHHHTCCCEEEEE-EESS--TT------STTTC-TTH--HHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEe-eEcC--cc------CcccC-HHH--HHHHHHHHHHHHHCCCEEEEee
Confidence 3455664 7999999983 3221 11 23445 543 7889999999999999999997
|
| >d1ji1a2 b.71.1.1 (A:555-637) Maltogenic amylase {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Maltogenic amylase species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]
Probab=92.21 E-value=0.076 Score=37.36 Aligned_cols=47 Identities=11% Similarity=0.122 Sum_probs=30.2
Q ss_pred eEEEec--CCCEEEEEE---CCEEEEEECCCCCC-----CC----cCCC-CcEEEEeCCcEE
Q 014447 373 VNILAS--DADVYIAAI---GDRVIMKIGPKMDI-----GN----LIPS-DFKVAADGTDYA 419 (424)
Q Consensus 373 ~~~~~~--~~~v~~~~r---~~~~lv~ln~~~~~-----~~----~~~~-~~~~~~~~~~~~ 419 (424)
|+.+.. ++++++|.| +++++|++|++.+. +- ...+ .|+..++|+.+.
T Consensus 2 f~~l~ad~~~~v~ay~R~~~~e~vlV~~N~s~~~~~v~l~~~~~~~~~~~~~~dll~g~~~~ 63 (83)
T d1ji1a2 2 FMTLITDDTNKIYSYGRFDNVNRIAVVLNNDSVSHTVNVPVWQLSMPNGSTVTDKITGHSYT 63 (83)
T ss_dssp EEEEEEETTTTEEEEEEECSSCEEEEEEECSSSCEEEEECGGGGTCCTTCEEEETTTCCEEE
T ss_pred cEEEEecCCCCEEEEEEEcCCcEEEEEEeCCCCCEEEEecccccccccCcEEEEccCCCEEE
Confidence 455554 358999999 78999999997541 11 1112 366666666554
|
| >d2ebna_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F1 [TaxId: 238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Endo-beta-N-acetylglucosaminidase species: Flavobacterium meningosepticum, endoglycosidase F1 [TaxId: 238]
Probab=91.75 E-value=0.2 Score=44.08 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA 169 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (424)
.+++.++|+.||++|+||+|-+==+|.+..
T Consensus 66 ~~~~~~~i~~~q~~g~KvllsigG~~~~~~-------------------------------------------------- 95 (285)
T d2ebna_ 66 LTNRAKYLKPLQDKGIKVILSILGNHDRSG-------------------------------------------------- 95 (285)
T ss_dssp HHTHHHHTHHHHHTTCEEEEEEECCSSSCC--------------------------------------------------
T ss_pred hhhHHHHHHHHHhCCCEEEEEeccCCCCcc--------------------------------------------------
Confidence 566889999999999999998743322100
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014447 170 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (424)
Q Consensus 170 ~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (424)
+.--+++-|+.+.+.+...++++|.||+-+|-
T Consensus 96 --~~~~~~~~~~~F~~~~~~~~~~y~lDGiDiD~ 127 (285)
T d2ebna_ 96 --IANLSTARAKAFAQELKNTCDLYNLDGVFFDD 127 (285)
T ss_dssp --TTCBCHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred --cccCCHHHHHHHHHHHHHHHHHcCCcEEeccc
Confidence 00015677888888888888889999999995
|
| >d1tvna1 c.1.8.3 (A:1-293) Endoglucanase Cel5a {Pseudoalteromonas haloplanktis [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase Cel5a species: Pseudoalteromonas haloplanktis [TaxId: 228]
Probab=91.73 E-value=0.057 Score=47.82 Aligned_cols=54 Identities=11% Similarity=0.207 Sum_probs=34.5
Q ss_pred hhHHH-HcCCCEEEeCCCCCCC-CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 49 IPDLS-NAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 49 L~ylk-~lGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+..|+ ++|+|+|-+. +...+ ....| ... +. +..+.++++|+.|+++||+||||+
T Consensus 44 ~~~l~~~~g~N~VR~~-~~~~~~~~~~~------~~~-~~-~~l~~ld~~v~~a~~~gi~vild~ 99 (293)
T d1tvna1 44 VAKAKTEFNATLIRAA-IGHGTSTGGSL------NFD-WE-GNMSRLDTVVNAAIAEDMYVIIDF 99 (293)
T ss_dssp HHHHHHHHCCSEEEEE-EECCTTSTTST------TTC-HH-HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHhCCCcEEEEe-ccccccccccc------ccC-cH-HHHHHHHHHHHHHHHcCCEEEecC
Confidence 44565 6899999983 22111 11111 111 11 136789999999999999999997
|
| >d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase Cel5a species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.70 E-value=0.051 Score=48.13 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=37.8
Q ss_pred hhhhHHH-HcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 47 NSIPDLS-NAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 47 ~~L~ylk-~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
+.++.|+ ++|+|+|-+ |+.... ..+ +..+ +. +..+.++++|+.|.++||+||||+-
T Consensus 42 ~~~~~l~~~~G~N~vR~-~~~~~~-~~~------~~~~-~~-~~~~~ld~vv~~a~~~Giyvild~h 98 (291)
T d1egza_ 42 DTVASLKKDWKSSIVRA-AMGVQE-SGG------YLQD-PA-GNKAKVERVVDAAIANDMYAIIGWH 98 (291)
T ss_dssp HHHHHHHHTTCCCEEEE-EEECSS-TTS------TTTC-HH-HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEE-eccccc-cCC------cccC-cH-HHHHHHHHHHHHHHHCCCeEeeeec
Confidence 4556676 689999997 443221 112 2223 32 2367889999999999999999973
|
| >d1r46a2 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Melibiase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.68 E-value=0.46 Score=41.44 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=40.6
Q ss_pred HHHHhhhhH-----HHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 43 NSLKNSIPD-----LSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 43 ~gi~~~L~y-----lk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
+.+++.++. |+++|++.|.|===+..... +......+++.+|. ..++.|++.+|++||+.-+=+.+-
T Consensus 36 ~~~~~~a~~~~~~gl~~~G~~~~~iDdGW~~~~~---d~~G~~~~~~~~FP--~Gl~~l~~~i~~~G~~~Giw~~~~ 107 (292)
T d1r46a2 36 KLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQR---DSEGRLQADPQRFP--HGIRQLANYVHSKGLKLGIYADVG 107 (292)
T ss_dssp HHHHHHHHHHHHTTHHHHTCCEEECCSSCBCSSC---CTTSCCCBCTTTCT--THHHHHHHHHHHTTCEEEEEEESS
T ss_pred HHHHHHHHHHHHccchhhCCeEEEEcCCcCCCCC---CCCCCCccCccccc--CccHHHHHHHHhcCceecccCCCc
Confidence 345555554 45789999887311111110 11112345534555 369999999999999998877664
|
| >d1ea9c2 b.71.1.1 (C:504-583) Maltogenic amylase {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Maltogenic amylase species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Probab=91.51 E-value=0.05 Score=38.09 Aligned_cols=22 Identities=5% Similarity=0.067 Sum_probs=18.3
Q ss_pred CCCEEEEEE---CCEEEEEECCCCC
Q 014447 379 DADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 379 ~~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
+.+++||.| +++++|++|++..
T Consensus 10 d~~v~ay~R~~~~e~vlVv~N~S~~ 34 (80)
T d1ea9c2 10 NSRQIAYLREDDQDTILVVMNNDKA 34 (80)
T ss_dssp SCCEEEEEEECSSCEEEEEEECSSS
T ss_pred CCCEEEEEEecCCCEEEEEEECCCC
Confidence 347999999 7899999999753
|
| >d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Glycosyl hydrolases family 35 catalytic domain domain: Beta-galactosidase LacA, N-terminal domain species: Penicillium sp. [TaxId: 5081]
Probab=91.37 E-value=0.18 Score=45.88 Aligned_cols=59 Identities=19% Similarity=0.133 Sum_probs=40.5
Q ss_pred HHhhhhHHHHcCCCEEEeCCCCC--CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 45 LKNSIPDLSNAGITHVWLPPPSQ--SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 45 i~~~L~ylk~lGv~~I~l~Pi~~--~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
..+.|+-+|++|+|+|-+.=.+. .|....| ||. ...++.++++.|+++||+||+..-+.
T Consensus 38 w~~~l~~mk~~G~n~vr~~~~W~~~ep~~g~~---df~--------~~~~l~~~l~~a~~~Gl~vil~~g~~ 98 (354)
T d1tg7a5 38 YIDIFEKVKALGFNCVSFYVDWALLEGNPGHY---SAE--------GIFDLQPFFDAAKEAGIYLLARPGPY 98 (354)
T ss_dssp HHHHHHHHHTTTCCEEEEECCHHHHCSBTTBC---CCC--------GGGCSHHHHHHHHHHTCEEEEECCSC
T ss_pred HHHHHHHHHHcCCCEEEEecchhccCCCCCcc---ccc--------chhhHHHHHHHHHHcCCEEEEcCCCC
Confidence 56779999999999998732221 1111122 221 34578999999999999999876543
|
| >d1m53a1 b.71.1.1 (A:521-598) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Probab=90.74 E-value=0.22 Score=34.30 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=21.6
Q ss_pred CCeEEEec-CCCEEEEEE---CCEEEEEECCCC
Q 014447 371 SRVNILAS-DADVYIAAI---GDRVIMKIGPKM 399 (424)
Q Consensus 371 G~~~~~~~-~~~v~~~~r---~~~~lv~ln~~~ 399 (424)
|.++.+.. +++||||.| +++++|++|-+.
T Consensus 1 G~y~~l~~~~~~v~aY~R~~~~~~~lVv~NfS~ 33 (78)
T d1m53a1 1 GAYQDLNPQDNTVYAYTRTLGNERYLVVVNFKE 33 (78)
T ss_dssp SEEEESCTTCSSEEEEEEEETTEEEEEEEECSS
T ss_pred CceEEccCCCCcEEEEEEEcCCeEEEEEEeCCC
Confidence 67777754 468999999 567777777654
|
| >d1hl9a2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Putative alpha-L-fucosidase, catalytic domain domain: Putative alpha-L-fucosidase, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.35 E-value=0.87 Score=41.00 Aligned_cols=138 Identities=14% Similarity=-0.015 Sum_probs=79.5
Q ss_pred hhhhHHHHcCCCEEEeCCCCCC-CCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCc
Q 014447 47 NSIPDLSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG 125 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~ 125 (424)
+-..-+|+.|..+|.|+-=+-- ..=+.-..++|..++ ... ..+=+++|++|||++||++.+=+-. +.
T Consensus 103 ~Wv~~ak~aGaky~vlTaKHHDGF~Lw~S~~t~~n~~~-~~~-~rDiv~el~~A~rk~Glk~G~YyS~---~~------- 170 (350)
T d1hl9a2 103 EWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVK-RGP-KRDLVGDLAKAVREAGLRFGVYYSG---GL------- 170 (350)
T ss_dssp HHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTT-STT-CSCHHHHHHHHHHHTTCEECEEECC---SC-------
T ss_pred HHHHHHHHcCCCEEEEEEEecCCcccCCCCCCCCCCcC-CCC-CCchHHHHHHHHHhcCCceeEEecc---cc-------
Confidence 3456789999999998854321 111112234555556 443 3567999999999999999873321 11
Q ss_pred ceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 014447 126 IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 205 (424)
Q Consensus 126 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~ 205 (424)
+|....... .+. ......+...+...+++...++.+++.+|.|++=+|...
T Consensus 171 --------------dw~~~~~~~---~~~------------~~~~~~~~~~~~y~~~~~~Ql~EL~~~Y~p~~~w~D~~~ 221 (350)
T d1hl9a2 171 --------------DWRFTTEPI---RYP------------EDLSYIRPNTYEYADYAYKQVMELVDLYLPDVLWNDMGW 221 (350)
T ss_dssp --------------CTTSCCSCC---CSG------------GGGGTCSCCSHHHHHHHHHHHHHHHHHHCCSCEEECSCC
T ss_pred --------------ccccccCCC---CCc------------chhcccCccchHHHHHHHHHHHHHHhccCCceEEecccc
Confidence 111000000 000 000112334567888999999999999999999999753
Q ss_pred CC-CHH---HHHHHHHhcCCCeEE
Q 014447 206 GY-APS---ITKVYMENTSPDFAV 225 (424)
Q Consensus 206 ~~-~~~---~~~~~~~~~~p~~~v 225 (424)
.- ... .+...+++..|..++
T Consensus 222 ~~~~~~~~~~~~~~i~~~qp~~~i 245 (350)
T d1hl9a2 222 PEKGKEDLKYLFAYYYNKHPEGSV 245 (350)
T ss_dssp CGGGTTHHHHHHHHHHHHCTTCCB
T ss_pred cccchhhHHHHHHHHHHhCCCCcc
Confidence 22 111 122335556664444
|
| >d1nowa1 c.1.8.6 (A:200-552) beta-hexosaminidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-hexosaminidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.58 E-value=0.6 Score=42.14 Aligned_cols=127 Identities=11% Similarity=0.089 Sum_probs=73.0
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccc--------cCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRL--------YDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-~~~gY~~~d~--------~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+..-|.+.|+.+..+++|.++|- -+. .++.+.+..| +..+ ..| |.+|+++||+-|+++||+||-.+
T Consensus 16 ~~~~lk~~id~ma~~K~N~lhlH---l~D~~~~~~e~~~~P~l~~~g~~~~~-~~y-T~~d~~~lv~yA~~rgI~iiPEi 90 (353)
T d1nowa1 16 PVKIILKTLDAMAFNKFNVLHWH---IVDDQSFPYQSITFPELSNKGSYSLS-HVY-TPNDVRMVIEYARLRGIRVLPEF 90 (353)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEE---CCCSSCCCBCCSSCHHHHHHHSSSTT-SCB-CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE---EecCCCceeccCCCcchhhcCCCCCC-CCc-CHHHHHHHHHHHHHCCCEEEecc
Confidence 36788888999999999998862 111 1122222222 1222 333 78999999999999999999666
Q ss_pred e-cccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 014447 112 V-INHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL 190 (424)
Q Consensus 112 v-~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w 190 (424)
- +-|+..--. . .++ ..+.+.. .. ........||..+|++.+.+.+.+...
T Consensus 91 d~PGH~~~~~~-----~--~pe------------l~~~~~~---~~-------~~~~~~~~l~~~~~~t~~~~~~v~~e~ 141 (353)
T d1nowa1 91 DTPGHTLSWGK-----G--QKD------------LLTPCYS---RQ-------NKLDSFGPINPTLNTTYSFLTTFFKEI 141 (353)
T ss_dssp EESSSCTTHHH-----H--STT------------CEEECCC--------------CCSEEEECTTCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHH-----H--hhh------------hcCCccc---cC-------CcCCCccccCCCchhhHHHHHHHHHHH
Confidence 3 456532100 0 000 0000000 00 000011128889999999999998888
Q ss_pred HHhcCCCeEEe
Q 014447 191 KTEIGFDGWRF 201 (424)
Q Consensus 191 ~~~~gvDGfR~ 201 (424)
++-|.-+-|-+
T Consensus 142 ~~~F~~~~~Hi 152 (353)
T d1nowa1 142 SEVFPDQFIHL 152 (353)
T ss_dssp HHHCCSSEEEE
T ss_pred HHhhccceeee
Confidence 76554333433
|
| >d1uoka1 b.71.1.1 (A:480-558) Oligo-1,6-glucosidase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Oligo-1,6-glucosidase species: Bacillus cereus [TaxId: 1396]
Probab=89.50 E-value=0.16 Score=35.10 Aligned_cols=30 Identities=0% Similarity=0.179 Sum_probs=22.6
Q ss_pred CCeEEEec-CCCEEEEEE---CCEEEEEECCCCC
Q 014447 371 SRVNILAS-DADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 371 G~~~~~~~-~~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
|.++.+.. +++||||.| +++++|++|-+.+
T Consensus 1 G~~~~l~~~~~~V~aY~R~~~~~~~lVv~NfS~~ 34 (79)
T d1uoka1 1 GSYDLILENNPSIFAYVRTYGVEKLLVIANFTAE 34 (79)
T ss_dssp CEEEEESTTCSSEEEEEEEETTEEEEEEEECSSS
T ss_pred CCeEEccCCCCcEEEEEEECCCcEEEEEEeCCCC
Confidence 67888865 568999999 5677777777543
|
| >d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Probab=89.31 E-value=0.0026 Score=62.04 Aligned_cols=47 Identities=9% Similarity=-0.026 Sum_probs=42.9
Q ss_pred CCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCC
Q 014447 74 YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK 121 (424)
Q Consensus 74 Y~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~ 121 (424)
|.+.++..++ +.+|+.++++.++.++|.+|++|++|+|+||++.+|.
T Consensus 89 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 135 (563)
T d2fhfa5 89 KVADIQQPFS-RLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSK 135 (563)
T ss_dssp GCCCTTSBHH-HHHHHCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBT
T ss_pred cccccccccc-cccccccccchhhhhhhccccchhhhhhhcccccccc
Confidence 5566777888 8999999999999999999999999999999999886
|
| >d1uasa2 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Melibiase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=89.04 E-value=1.1 Score=38.50 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=39.5
Q ss_pred cHHHHHhhhhHH-----HHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 41 WYNSLKNSIPDL-----SNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 41 ~~~gi~~~L~yl-----k~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
+-+.+.+.++.+ +.+|++.|.|===+...... +..+ ..+|+.+|. ..++.|++.+|++||++-+=+-+
T Consensus 24 ~e~~~~~~~~~~~~~gl~~~G~~~~~iDdGW~~~~~d--~~g~-~~~~~~~fP--~Gl~~~~~~~~~~G~~~Glw~~~ 96 (273)
T d1uasa2 24 NEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRD--SQGN-FVPNRQTFP--SGIKALADYVHAKGLKLGIYSDA 96 (273)
T ss_dssp CHHHHHHHHHHHHHTSHHHHTCCEEECCSSCBCSSCC--TTSC-CCBCTTTCT--TCHHHHHHHHHHTTCEEEEEEES
T ss_pred CHHHHHHHHHHHHHcCchhhCCeEEEEcCCcCCCCCC--CCCC-cccCccccC--CChHHHHHHHHhCCCeEEEecCC
Confidence 345566666664 56899988763211111100 0112 234434454 35999999999999999875433
|
| >d1eoka_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F3 [TaxId: 238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Endo-beta-N-acetylglucosaminidase species: Flavobacterium meningosepticum, endoglycosidase F3 [TaxId: 238]
Probab=88.83 E-value=0.34 Score=42.02 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=49.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCC
Q 014447 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160 (424)
Q Consensus 81 ~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 160 (424)
.+. ..+-+.++|+.-|++||++|+||++-+==.+.+.. + .. .
T Consensus 50 ~~~-~~~~~~~~~~~~i~~~q~~g~kVllSiGG~~~~~~----------~---------~~------~------------ 91 (282)
T d1eoka_ 50 GMM-GSFKSYKDLDTQIRSLQSRGIKVLQNIDDDVSWQS----------S---------KP------G------------ 91 (282)
T ss_dssp GGG-TTCSSHHHHHHHHHHHHTTTCEEEEEEECCGGGGS----------S---------SG------G------------
T ss_pred cee-ecccchhHHHHHHHHHhhcCceEEEEEecCCCCCc----------c---------CC------c------------
Confidence 345 55667899999999999999999998632211000 0 00 0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014447 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (424)
Q Consensus 161 ~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (424)
......+++.+.+...++++|+|||=+|-
T Consensus 92 --------------~~~~~~~~~~~~~~~~i~~yglDGiDiD~ 120 (282)
T d1eoka_ 92 --------------GFASAAAYGDAIKSIVIDKWKLDGISLDI 120 (282)
T ss_dssp --------------GSSSHHHHHHHHHHHHTTTTCCCEEEEEC
T ss_pred --------------cHHHHHHHHHHHHHHHHHHhCCCceeecc
Confidence 00125677778888888889999999996
|
| >d1qbaa3 c.1.8.6 (A:338-780) Bacterial chitobiase (beta-N-acetylhexosaminidase) {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: Bacterial chitobiase (beta-N-acetylhexosaminidase) species: Serratia marcescens [TaxId: 615]
Probab=87.08 E-value=0.9 Score=42.24 Aligned_cols=75 Identities=11% Similarity=0.116 Sum_probs=48.5
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCC------CCCCCC---------CCCCCcccccCCCCCCCC----------CHHHHHH
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPP------PSQSVA---------PQGYMPGRLYDLDASKYG----------SQADLKS 95 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~P------i~~~~~---------~~gY~~~d~~~id~~~~G----------t~edl~~ 95 (424)
+...|.+-||.+.-.++|.+++-= .++.+. .++.......... |.+| |.+|+|+
T Consensus 16 ~~~~ik~~id~ma~~KlN~lH~HltD~qg~rle~~~~P~Lt~~ga~~~~~~~~~~~~~-~~~~~~~~~~~~~YT~~ei~e 94 (443)
T d1qbaa3 16 KKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCLL-PQYGQGPDVYGGFFSRQDYID 94 (443)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECBCSSCBCBCCTTCTHHHHTTTEECSCTTCSSSBC-CCTTSCSSCEECCBCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCceeeeCCcchhhhhccccccccccccccc-ccccCCCCCCCCccCHHHHHH
Confidence 377888899999999999888721 011111 1122222222222 2222 6999999
Q ss_pred HHHHHHHcCCEEEEeee-cccC
Q 014447 96 LIQAFRQKGIKCLADMV-INHR 116 (424)
Q Consensus 96 Lv~~aH~~Gi~VilD~v-~NH~ 116 (424)
||+-|.++||+||-.+- |-|+
T Consensus 95 iv~yA~~rgI~vIPEID~PGH~ 116 (443)
T d1qbaa3 95 IIKYAQARQIEVIPEIDMPAHA 116 (443)
T ss_dssp HHHHHHHTTCEEEEEEEESSSC
T ss_pred HHHHHHHcCCEEeeccchHHHH
Confidence 99999999999996653 4565
|
| >d1m7xa2 b.71.1.1 (A:623-728) 1,4-alpha-glucan branching enzyme {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: 1,4-alpha-glucan branching enzyme species: Escherichia coli [TaxId: 562]
Probab=86.43 E-value=0.89 Score=33.21 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=30.7
Q ss_pred CeEEEe---cCCCEEEEEE----CCEEEEEECCCC------CCCCcCCCCcEEEEeCCc
Q 014447 372 RVNILA---SDADVYIAAI----GDRVIMKIGPKM------DIGNLIPSDFKVAADGTD 417 (424)
Q Consensus 372 ~~~~~~---~~~~v~~~~r----~~~~lv~ln~~~------~~~~~~~~~~~~~~~~~~ 417 (424)
.|+|+. .++.|++|.| ++.++||+|.+. .+|-..++.|++.++.+.
T Consensus 3 GF~Wi~~~d~~~sV~af~R~~~~~~~~vvV~Nfsp~~~~~Y~igvp~~G~~~~ilNTD~ 61 (106)
T d1m7xa2 3 GFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRHDYRFGINQPGKWREILNTDS 61 (106)
T ss_dssp GEEEEEEEETTTTEEEEEEECTTCCEEEEEEECSSCCEEEECCBCSSCSEEEEEEETTS
T ss_pred CCEEeeCCCCCCCEEEEEEeCCCCCEEEEEEeCCCCccCcEEcCCCCCCeEEEEEcCCc
Confidence 477874 4668999999 257888887643 244444557777777654
|
| >d2aama1 c.1.8.15 (A:28-312) Hypothetical protein TM1410 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: TM1410-like domain: Hypothetical protein TM1410 species: Thermotoga maritima [TaxId: 2336]
Probab=86.36 E-value=0.49 Score=41.39 Aligned_cols=35 Identities=11% Similarity=0.294 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 014447 172 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207 (424)
Q Consensus 172 ln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~ 207 (424)
+|+++|+.|+.|.+.+...++ .|+|||-+|.+...
T Consensus 100 vd~~~~~w~~il~~ri~~~~~-~GfDGvflD~lD~y 134 (285)
T d2aama1 100 VKYWYNEWKEIVFSYLDRVID-QGFKGIYLDRIDSF 134 (285)
T ss_dssp ECTTSHHHHHHHHHHHHHHHH-TTCSEEEEECTTHH
T ss_pred EecCcHHHHHHHHHHHHHHHH-cCCCeEEecccchh
Confidence 889999999999999988877 99999999987553
|
| >d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial beta-amylase species: Bacillus cereus [TaxId: 1396]
Probab=85.24 E-value=0.72 Score=42.14 Aligned_cols=66 Identities=9% Similarity=0.119 Sum_probs=50.4
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCC----CCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPS----QSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~----~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
.-+.+.+.+.|..||++||++|-+ +|+ |.....-| ..+.+++|++-+++.||||.+=+.++
T Consensus 25 ~~~~~~~~~~L~~LK~aGV~gV~v-dVwWGivE~~~Pg~Y--------------dws~yd~l~~mv~~~GLKi~vvmsfH 89 (417)
T d1vema2 25 VTNWETFENDLRWAKQNGFYAITV-DFWWGDMEKNGDQQF--------------DFSYAQRFAQSVKNAGMKMIPIISTH 89 (417)
T ss_dssp TSCHHHHHHHHHHHHHTTEEEEEE-EEEHHHHTCSSTTCC--------------CCHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEE-eeeeeeeecCCCCcc--------------CcHHHHHHHHHHHHcCCeEEEEEEec
Confidence 346889999999999999999976 554 21111111 14589999999999999999999998
Q ss_pred cCCCC
Q 014447 115 HRTAE 119 (424)
Q Consensus 115 H~~~~ 119 (424)
.|+.+
T Consensus 90 ~cGgn 94 (417)
T d1vema2 90 QCGGN 94 (417)
T ss_dssp CBSSS
T ss_pred ccCCC
Confidence 77654
|
| >d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-hexosaminidase A species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.47 E-value=2.9 Score=37.52 Aligned_cols=122 Identities=13% Similarity=0.078 Sum_probs=72.2
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCC-CCCCCCccccc--------CCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLY--------DLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-~~~gY~~~d~~--------~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+...|.+-||.+...++|.++|- -+. .++.+.+..|- ... ..+=|.+|+++||+-|.++||+||-.+
T Consensus 16 ~~~~lk~~id~ma~~K~N~lhlH---ltD~~~~r~e~~~~p~l~~~ga~~~~-~~~yT~~d~~elv~yA~~rgI~vIPEi 91 (362)
T d2gjxa1 16 PLSSILDTLDVMAYNKLNVFHWH---LVDDPSFPYESFTFPELMRKGSYNPV-THIYTAQDVKEVIEYARLRGIRVLAEF 91 (362)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEE---CCCSSCCCBCCSSCTHHHHHHSSCTT-TSCBCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE---EEcCCCceeccCCCchhhhcCCcCCC-CCccCHHHHHHHHHHHHHcCCEEEecc
Confidence 37888889999999999999872 111 12222222221 111 233389999999999999999999776
Q ss_pred e-cccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 014447 112 V-INHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL 190 (424)
Q Consensus 112 v-~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w 190 (424)
- |-|+..--...... ...+.+..... ...-.+|..++++.+.+.+.+...
T Consensus 92 D~PGH~~a~~~~~p~l-----------------~~~~~~~~~~~------------~~~~~l~~~~~~t~~f~~~v~~E~ 142 (362)
T d2gjxa1 92 DTPGHTLSWGPGIPGL-----------------LTPCYSGSEPS------------GTFGPVNPSLNNTYEFMSTFFLEV 142 (362)
T ss_dssp CCSSSCTTTTTTSTTC-----------------EEEEESSSSEE------------EEEEEECTTCHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHhChhh-----------------cCcccCCCCCC------------CcccccCCCcHHHHHHHHHHHHHH
Confidence 4 45653321110000 00000000000 000128888999999999998888
Q ss_pred HHhcC
Q 014447 191 KTEIG 195 (424)
Q Consensus 191 ~~~~g 195 (424)
++-|.
T Consensus 143 ~~lF~ 147 (362)
T d2gjxa1 143 SSVFP 147 (362)
T ss_dssp HHHCC
T ss_pred HHhhc
Confidence 77554
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=84.45 E-value=1.1 Score=38.12 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=38.9
Q ss_pred HHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 45 i~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+.+-+++.++|||++|++|- | +-.++ .++..++|+.|.++|++|+-.+
T Consensus 87 ~~~y~~~~~~lGf~~iEiSd--------g-----~~~i~------~~~~~~~I~~~~~~G~~V~~Ev 134 (251)
T d1qwga_ 87 FDEFLNECEKLGFEAVEISD--------G-----SSDIS------LEERNNAIKRAKDNGFMVLTEV 134 (251)
T ss_dssp HHHHHHHHHHHTCCEEEECC--------S-----SSCCC------HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEcC--------C-----ccCCC------HHHHHHHHHHHHhCCCEEeecc
Confidence 44567889999999999983 1 23455 7899999999999999999655
|
| >d2hvma_ c.1.8.5 (A:) Hevamine A (chitinase/lysozyme) {Para rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Hevamine A (chitinase/lysozyme) species: Para rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=84.14 E-value=1.2 Score=38.42 Aligned_cols=59 Identities=14% Similarity=0.024 Sum_probs=40.0
Q ss_pred HHHHcCCCEEEeCCCCCCCCCCCCCcccc-cCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 51 DLSNAGITHVWLPPPSQSVAPQGYMPGRL-YDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 51 ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~-~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
|...-.+|+|-|.=+...+ ..++-..++ ...+ |..++.+++++.|++||++|+||++=+
T Consensus 19 ~c~~~~~~~I~laF~~~~~-~g~~~~~~~~~~~~-~~~~~~~~l~~~I~~~q~~g~KVllSi 78 (273)
T d2hvma_ 19 TCSTRKYSYVNIAFLNKFG-NGQTPQINLAGHCN-PAAGGCTIVSNGIRSCQIQGIKVMLSL 78 (273)
T ss_dssp HHHTSCCSEEEEEEEEECS-TTCCCEECCGGGCC-CGGGTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred HcCCCCCCEEEEEEEeEEC-CCCeeeccccccCC-CccCchhhHHHHHHHHHhCCCEEEEEE
Confidence 3445569999875443222 223333343 2345 667777899999999999999999986
|
| >d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase {Streptomyces plicatus [TaxId: 1922]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-N-acetylhexosaminidase species: Streptomyces plicatus [TaxId: 1922]
Probab=83.84 E-value=4.6 Score=35.99 Aligned_cols=126 Identities=10% Similarity=0.043 Sum_probs=70.6
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCccccc---------CCC--CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLY---------DLD--ASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~---------~id--~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
+...|.+.+|.+....+|.+++-=-- ..++.+.+..|- ... +..+=|.+|++++|+-|.++||+||-
T Consensus 16 ~~~~i~~~id~ma~~K~N~lh~Hl~D--~~~~r~e~~~~p~l~~~ga~~~~~~~~~~~yT~~di~~iv~ya~~rgI~viP 93 (356)
T d1jaka1 16 GVDEVKRYIDRVARYKYNKLHLHLSD--DQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVP 93 (356)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEECBC--SSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHHcCCeEEEEEEec--CCCcceeecCCchhhhccCccccCCCCCCccCHHHHHHHHHHHHHcCCeEee
Confidence 47788888999999999988763110 001111111111 110 02233689999999999999999998
Q ss_pred eee-cccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 014447 110 DMV-INHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN 188 (424)
Q Consensus 110 D~v-~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~ 188 (424)
.+- |-|+..--. . +++ ..|.+... ............||..+|++.+.+.+.+.
T Consensus 94 Eid~PgH~~~~~~-----~--~pe------------l~~~~~~~-------~~~~~~~~~~~~l~~~~~~t~~f~~~v~~ 147 (356)
T d1jaka1 94 EIDMPGHTNAALA-----S--YAE------------LNCDGVAP-------PLYTGTKVGFSSLCVDKDVTYDFVDDVIG 147 (356)
T ss_dssp ECCCSSSCHHHHH-----H--CGG------------GSTTSCCC-------CCCCSCCCSCCCCCTTCHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHH-----h--Ccc------------ccccCCCC-------ccccccCCCCcccccCchHHHHHHHHHHH
Confidence 764 456532100 0 000 00000000 00000111222488999999999999999
Q ss_pred HHHHhc
Q 014447 189 WLKTEI 194 (424)
Q Consensus 189 ~w~~~~ 194 (424)
..++-|
T Consensus 148 E~~~lf 153 (356)
T d1jaka1 148 ELAALT 153 (356)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 888744
|
| >d1yhta1 c.1.8.6 (A:16-359) Dispersin B, DspB {Actinobacillus actinomycetemcomitans [TaxId: 714]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: Dispersin B, DspB species: Actinobacillus actinomycetemcomitans [TaxId: 714]
Probab=82.54 E-value=1.3 Score=39.59 Aligned_cols=77 Identities=19% Similarity=0.141 Sum_probs=46.2
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCC------CCCCCCCC-----CC-C-cccccCCC-CCCCCCHHHHHHHHHHHHHcCCE
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPP------PSQSVAPQ-----GY-M-PGRLYDLD-ASKYGSQADLKSLIQAFRQKGIK 106 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~P------i~~~~~~~-----gY-~-~~d~~~id-~~~~Gt~edl~~Lv~~aH~~Gi~ 106 (424)
+...|.+-|+.+...++|.++|-- .++.+.+. |. . ...+...- ...+=|.+|+++||+-|.++||.
T Consensus 16 ~~~~ik~~id~ma~~K~N~lhlHltDdq~~~le~~~~p~l~~~~~~~~~~~~~~~~~~~~~yt~~e~~~lv~yA~~rgI~ 95 (344)
T d1yhta1 16 SPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKDGIYINPYTGKPFLSYRQLDDIKAYAKAKGIE 95 (344)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECBSSSCBCBCBTTTTBCGGGSEECTTSCEECTTTCCEEBCHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeecCCCceecccCCchhhhhccccCCCCCCCCCCCCcccCHHHHHHHHHHHHHcCCE
Confidence 478888899999999999998821 01111100 00 0 00000000 01112799999999999999999
Q ss_pred EEEeee-cccCC
Q 014447 107 CLADMV-INHRT 117 (424)
Q Consensus 107 VilD~v-~NH~~ 117 (424)
||-.+- +-|++
T Consensus 96 viPeiD~PGH~~ 107 (344)
T d1yhta1 96 LIPELDSPNHMT 107 (344)
T ss_dssp EEEEEEESSSCH
T ss_pred EEeccchhhHHH
Confidence 995553 45653
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=82.47 E-value=0.026 Score=54.88 Aligned_cols=41 Identities=5% Similarity=0.042 Sum_probs=37.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC
Q 014447 167 QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 208 (424)
Q Consensus 167 ~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~ 208 (424)
..++++|..+|.++..+.+.+.+|++ .+|||||+|++..+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vdgfr~d~~~~~~ 305 (572)
T d1gjwa2 265 KFTLPPNLIDPQKWEKIKREEGNILE-LIVKEFGIITPPGFS 305 (572)
T ss_dssp TBCCCHHHHCHHHHHHHHTCSSCHHH-HHHHHHSEECCCBCC
T ss_pred ccCCCccccCHHHHHHHHHHhhhHHh-cccceeecccccccc
Confidence 56788999999999999999999997 999999999987664
|
| >d2ebfx2 c.150.1.2 (X:875-1093) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: EreA/ChaN-like superfamily: EreA/ChaN-like family: PMT domain-like domain: Dermonecrotic toxin, ToxA species: Pasteurella multocida [TaxId: 747]
Probab=80.80 E-value=0.21 Score=40.48 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=41.7
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCC------------CCCC--CCCC-cccccCCCCCCCCCHHHHHHHHHHHHHcC
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQ------------SVAP--QGYM-PGRLYDLDASKYGSQADLKSLIQAFRQKG 104 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~------------~~~~--~gY~-~~d~~~id~~~~Gt~edl~~Lv~~aH~~G 104 (424)
|.++=+++.++-||+-||++|.|-=+-. +..- ..-+ ..-+..-| +. | .|+.|+++||++|
T Consensus 45 gS~RfvienM~~Lk~~GVTvI~lEHL~sD~~Q~~Id~Yl~~G~~S~~L~a~Lk~l~~~d-~~-g---af~~Li~~Ar~ng 119 (219)
T d2ebfx2 45 KSIDFFLNNLTTFIDNGLTEIAISDLPYDIVQQEISQFLQGSNEWKTLDAMLFNLDKGD-IN-G---AFRKLLQSAKDNN 119 (219)
T ss_dssp HHHHHHHHTHHHHHHTTCCEEEEEEEEHHHHHHHHHHHHTTCSCCHHHHHHHHHHTTTC-SS-C---HHHHHHHHHHHTT
T ss_pred chHHHHHHhhHHHHHCCceEEeHhhhhhhHHHHHHHHHHhcCcCCccHHHHHHHhhccc-ch-h---hHHHHHHHHHHCC
Confidence 4577899999999999999999853321 1100 0000 01112233 22 2 6889999999999
Q ss_pred CEEE
Q 014447 105 IKCL 108 (424)
Q Consensus 105 i~Vi 108 (424)
|+|+
T Consensus 120 ikI~ 123 (219)
T d2ebfx2 120 IKFR 123 (219)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 9997
|
| >d1ua7a1 b.71.1.1 (A:348-425) Bacterial alpha-Amylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Bacterial alpha-Amylase species: Bacillus subtilis [TaxId: 1423]
Probab=80.21 E-value=0.35 Score=33.29 Aligned_cols=20 Identities=5% Similarity=0.275 Sum_probs=16.0
Q ss_pred CCCEEEEEECCEEEEEECCC
Q 014447 379 DADVYIAAIGDRVIMKIGPK 398 (424)
Q Consensus 379 ~~~v~~~~r~~~~lv~ln~~ 398 (424)
++.+++|+|+.+.+|++|+.
T Consensus 11 ~nqi~~~~RG~kGfvaiN~~ 30 (78)
T d1ua7a1 11 NNQIFMNQRGSHGVVLANAG 30 (78)
T ss_dssp CTTEEEEEETTTEEEEEECS
T ss_pred CeEEEEEecCCcEEEEEeCC
Confidence 45666679999999999984
|
| >d1jz8a5 c.1.8.3 (A:334-625) beta-Galactosidase, domain 3 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: beta-Galactosidase, domain 3 species: Escherichia coli [TaxId: 562]
Probab=80.18 E-value=3.9 Score=34.88 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=39.4
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
-+-..+...|..+|++|+|+|-+.= | +. -..+.+.|.+.||.|+.|+.....
T Consensus 34 ~~~~~~~~di~l~k~~G~N~iR~~~---------~-------p~---------~~~~~~~~D~~Gilv~~e~~~~~~ 85 (292)
T d1jz8a5 34 MDEQTMVQDILLMKQNNFNAVRCSH---------Y-------PN---------HPLWYTLCDRYGLYVVDEANIETH 85 (292)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECTT---------S-------CC---------CHHHHHHHHHHTCEEEEECSCBCT
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecC---------C-------CC---------hHHHHHHHhhcCCeEEeeeeeccc
Confidence 3566778889999999999998541 1 11 135788999999999999877544
|