Citrus Sinensis ID: 014487

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
Protein Sequence
MTMEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFVSGD
Secondary Structure (PSIPRED)
ccccccccHHHHcccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHccccccccEEEEEccccccccHHHHHHHHHHHHcccEEEEEEcccHHHHHccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHccEEEEEcccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHccccccccccccEEEEEccccccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHcccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHccccEEEEccccccccccccccccHHHHHHccEEEEEcccccccHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEccccEccHHEcccEEcccccccccccccccccccccccEEEEEccccccccccEEEEEEEccccccHHHHHHHHHHHccccEEEEEEEcHHHHHHccccccccHHHHHHHHccEccccEEEccccccccHHHHHHHHHHccccEEEEccccccccccccHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEcccccEEEEcccccccccccEEEEEcEccccccHHHHHHHHHHHccccEEEEEEEcHHHHHHHcccccccccHHHHHHHHHHHHHHHHEEccccccccHHHHHHccccEEEEcccccccccccccccccHcHHHcccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mtmeyesnswiwdglyyyphfFGGLMLTAALLGVStsyfggigvfslphlwsdcfhkkkcgkkkrVRVYMDGCFDLMHYGHANALRQAKALGDElvvgvvsdeeiiankgppvlsMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNehkidyiihgddpcllpdgtDAYALAKKvgrykqikrtegvsstDIVGRILSSmedtkacedhnnaslprdplraiqskdahlsqflptsrrivqfsnckgpgpnarVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYtdqivsehrgsyhpimhlHERSLSVLACRYvdeviigapweVTKDMITTFNICLVVHgtvsetntpltgqsdpyeVAKSMGIFqllespksittTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFVSGD
Flexible Loop (DISEMBL)
mtmeyesnSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCfhkkkcgkkkrVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEeiiankgppvlsmEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKvgrykqikrtegvsstdivGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLlespksittTSVAQRIIANHEAYMKRNakkavsekkyyeqkmfvsgd
Low Complexity Region (SEG)
MTMEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHkkkcgkkkRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFVSGD
Disordered region (IsUnstruct)
*******NSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRIL**********************************FLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETN*********YEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAY************************
Disordered Region (DISOPRED)
*******NSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLP******************RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKA*******SLPRDPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYY**KMFV***
Disordered Region (DISEMBL)
MTMEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFVSGD
Disordered Region (DISPRO)
*****ESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDT**********************DAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKM*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTMEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFVSGD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	423	2.2.26 [Sep-21-2011]
Q55BZ4	360	Ethanolamine-phosphate cy	yes	no	0.815	0.958	0.495	2e-97
Q99447	389	Ethanolamine-phosphate cy	yes	no	0.808	0.879	0.442	1e-85
Q922E4	404	Ethanolamine-phosphate cy	yes	no	0.832	0.871	0.434	2e-84
O88637	404	Ethanolamine-phosphate cy	yes	no	0.820	0.858	0.437	2e-84
Q5EA75	389	Ethanolamine-phosphate cy	yes	no	0.803	0.874	0.445	3e-84
Q8SQW6	322	Probable ethanolamine-pho	yes	no	0.739	0.972	0.363	4e-55
Q9UTI6	365	Probable ethanolamine-pho	yes	no	0.579	0.671	0.353	4e-46
P33412	323	Ethanolamine-phosphate cy	yes	no	0.721	0.944	0.321	2e-36
O74975	362	Probable choline-phosphat	no	no	0.312	0.364	0.449	7e-25
P49587	370	Choline-phosphate cytidyl	N/A	no	0.328	0.375	0.374	4e-24

>sp|Q55BZ4|PCY2_DICDI Ethanolamine-phosphate cytidylyltransferase OS=Dictyostelium discoideum GN=pctA PE=1 SV=1

 Score =  356 bits (913), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 179/361 (49%), Positives = 241/361 (66%), Gaps = 16/361 (4%)

Query: 63  KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLAL 122
           KK +RVY+DGCFDLMH+GHANALRQA+ LGD LVVGV +DEEI  NKGPPV++ +ER   
Sbjct: 7   KKPIRVYVDGCFDLMHFGHANALRQARELGDILVVGVHTDEEIAKNKGPPVMNEQERYKA 66

Query: 123 VSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRY 182
           V   KW DEV   APY +TE++++ L      D+ +HG+D  +  DG D Y   KK G++
Sbjct: 67  VRACKWADEVAEGAPYTLTEEYLDSL----NCDFCVHGEDISVGADGKDVYEGIKKSGKF 122

Query: 183 KQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAI-------QSKDAHLSQ 235
           + IKRTEGVS+T++VGR+L   +D       N +     PL  +       QS    LS 
Sbjct: 123 RFIKRTEGVSTTELVGRMLLCTKDHL----QNVSGEQTSPLGGVNPNVLHKQSPYTSLSH 178

Query: 236 FLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQI 295
           FLPT+R+IVQFS  + P PN +++Y+DG FDLFH GH E LK+AR LGD+L+VG++ D++
Sbjct: 179 FLPTTRKIVQFSEGRSPKPNDKIIYMDGGFDLFHVGHTEALKQARALGDYLIVGVHDDRV 238

Query: 296 VSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETN 355
           V E +GS  PIM+LHER LSVL+CRYVDEV+IGAP+ VTKDMI + +I +VVHG      
Sbjct: 239 VHEQKGSNFPIMNLHERVLSVLSCRYVDEVVIGAPFSVTKDMIDSLHINVVVHGDDQVVL 298

Query: 356 TPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYE 415
            P  G  DPY++ + +GI++ ++  + +T T + +RII N   Y  RN KK   E  + E
Sbjct: 299 GP-EGGVDPYKLPRELGIYKEVKHTEGLTATEIVKRIIDNRLQYEARNRKKEAKEINFIE 357

Query: 416 Q 416
           Q
Sbjct: 358 Q 358

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 4

>sp|Q99447|PCY2_HUMAN Ethanolamine-phosphate cytidylyltransferase OS=Homo sapiens GN=PCYT2 PE=1 SV=1

 Score =  317 bits (813), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 163/368 (44%), Positives = 238/368 (64%), Gaps = 26/368 (7%)

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
           G ++ VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER 
Sbjct: 18  GGRRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERY 77

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
            +V  +KWVDEV+  APY  T + +++    +  D+ +HG+D  L  DG D Y   K+ G
Sbjct: 78  KMVQAIKWVDEVVPAAPYVTTLETLDK----YNCDFCVHGNDITLTVDGRDTYEEVKQAG 133

Query: 181 RYKQIKRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNA--SLP--RDPLRAIQSK 229
           RY++ KRT+GVS+TD+VGR+L       SS E +    ++ ++    P  R+P   +   
Sbjct: 134 RYRECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKCPGGRNPWTGV--- 190

Query: 230 DAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLL 287
               SQFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K  +L +  +++
Sbjct: 191 ----SQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYII 246

Query: 288 VGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVV 347
            G++ DQ V+ ++G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT ++++ F + LV 
Sbjct: 247 AGLHFDQEVNHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVC 306

Query: 348 HGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKA 407
           HG       P    SDPY+  K  GIF+ ++S  ++TT  + QRII N   Y  RN KK 
Sbjct: 307 HGKTE--IIPDRDGSDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITNRLEYEARNQKKE 364

Query: 408 VSEKKYYE 415
             E  + E
Sbjct: 365 AKELAFLE 372

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|Q922E4|PCY2_MOUSE Ethanolamine-phosphate cytidylyltransferase OS=Mus musculus GN=Pcyt2 PE=1 SV=1

 Score =  313 bits (802), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/382 (43%), Positives = 236/382 (61%), Gaps = 30/382 (7%)

Query: 58  KKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSME 117
           K  G ++ VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + E
Sbjct: 15  KGPGDQRIVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQE 74

Query: 118 ERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK 177
           ER  +V  +KWVDEV+  APY  T + +++    H  D+ +HG+D  L  DG D Y   K
Sbjct: 75  ERYKMVQAIKWVDEVVPAAPYVTTLETLDK----HNCDFCVHGNDITLTVDGRDTYEEVK 130

Query: 178 KVGRYKQIKRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNA-SLPRDPLRA---- 225
           + GRY++ KRT+GVS+TD+VGR+L       SS E +    ++ ++   P  P  A    
Sbjct: 131 QAGRYRECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKPPHPTPAGDTL 190

Query: 226 ----------IQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEI 275
                      QS    +SQFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ 
Sbjct: 191 SSEVSSQCPGGQSPWTGVSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDF 250

Query: 276 LKKARQLGD--FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEV 333
           L++  +L    +++ G++ DQ V+ ++G  +PIM+LHER+LSVLACRYV EV+IGAP+ V
Sbjct: 251 LQEVHKLAKRPYVIAGLHFDQEVNRYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYSV 310

Query: 334 TKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRII 393
           T +++  F + LV HG       P    SDPY+  K  GIF  ++S   +TT  + QRII
Sbjct: 311 TAELLNHFKVDLVCHGKTE--IVPDRDGSDPYQEPKRRGIFYQIDSGSDLTTDLIVQRII 368

Query: 394 ANHEAYMKRNAKKAVSEKKYYE 415
            N   Y  RN KK   E  + E
Sbjct: 369 KNRLEYEARNQKKEAKELAFLE 390

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|O88637|PCY2_RAT Ethanolamine-phosphate cytidylyltransferase OS=Rattus norvegicus GN=Pcyt2 PE=1 SV=1

 Score =  313 bits (801), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 165/377 (43%), Positives = 234/377 (62%), Gaps = 30/377 (7%)

Query: 63  KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLAL 122
           ++ VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER  +
Sbjct: 20  QRTVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKM 79

Query: 123 VSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRY 182
           V  +KWVDEV+  APY  T + +++    H  D+ +HG+D  L  DG D Y   K+ GRY
Sbjct: 80  VQAIKWVDEVVPAAPYVTTLETLDK----HNCDFCVHGNDITLTVDGRDTYEEVKQAGRY 135

Query: 183 KQIKRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNA-SLPRDPLRA--------- 225
           ++ KRT+GVS+TD+VGR+L       SS E +    ++ ++   P  P  A         
Sbjct: 136 RECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKPPHPTPAGDTLSSEVS 195

Query: 226 -----IQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKAR 280
                 QS    +SQFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L++  
Sbjct: 196 SQCPGGQSPWTGVSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLQEVH 255

Query: 281 QLGD--FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMI 338
           +L    +++ G++ DQ V+ ++G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT +++
Sbjct: 256 KLAKRPYVIAGLHFDQEVNRYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYSVTAELL 315

Query: 339 TTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEA 398
             F + LV HG       P    SDPYE  K  GIF  ++S   +TT  + QRII N   
Sbjct: 316 NHFKVDLVCHGKTE--IVPDRDGSDPYEEPKRRGIFCQIDSGSDLTTDLIVQRIIKNRLE 373

Query: 399 YMKRNAKKAVSEKKYYE 415
           Y  RN KK   E  + E
Sbjct: 374 YEARNQKKEAKELAFLE 390

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|Q5EA75|PCY2_BOVIN Ethanolamine-phosphate cytidylyltransferase OS=Bos taurus GN=PCYT2 PE=2 SV=1

 Score =  312 bits (800), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 163/366 (44%), Positives = 233/366 (63%), Gaps = 26/366 (7%)

Query: 63  KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLAL 122
           ++ VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER  +
Sbjct: 20  RRAVRVWCDGCYDMVHYGHSNQLRQARAMGDHLIVGVHTDEEIAKHKGPPVFTQEERYKM 79

Query: 123 VSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRY 182
           V  +KWVDEV+  APY  T + +++    +  D+ +HG+D  L  DG D Y   K+ GRY
Sbjct: 80  VQAIKWVDEVVPAAPYVTTLETLDK----YNCDFCVHGNDITLTVDGRDTYEEVKQAGRY 135

Query: 183 KQIKRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNA--SLP--RDPLRAIQSKDA 231
           ++ KRT+GVS+TD+VGR+L       SS E +    ++ ++    P  R+P   +     
Sbjct: 136 RECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKCPGGRNPWTGV----- 190

Query: 232 HLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVG 289
             SQFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K   L +  +++ G
Sbjct: 191 --SQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVYGLAERPYVIAG 248

Query: 290 IYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
           ++ DQ V+ ++G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT +++  F + LV HG
Sbjct: 249 LHFDQEVNHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYSVTAELLDHFKVDLVCHG 308

Query: 350 TVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVS 409
                  P    SDPYE  K  GIF  ++S   +TT  + QRII N   Y  RN KK   
Sbjct: 309 KTE--VVPDKDGSDPYEEPKRRGIFCQVDSGNDLTTDLIVQRIIKNRLEYEARNQKKEAK 366

Query: 410 EKKYYE 415
           E  + E
Sbjct: 367 ELAFQE 372

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|Q8SQW6|ECT1_ENCCU Probable ethanolamine-phosphate cytidylyltransferase OS=Encephalitozoon cuniculi (strain GB-M1) GN=MUQ1 PE=1 SV=1

 Score =  215 bits (548), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 124/341 (36%), Positives = 195/341 (57%), Gaps = 28/341 (8%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           +V+ DGCFD+ HYGHANALRQ+KALGD L+ GV S   I   KG PV+  EER  +V G 
Sbjct: 8   KVWADGCFDMFHYGHANALRQSKALGDYLIAGVHSSLSINQEKGLPVMEDEERYEVVEGC 67

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
           ++VDEV+ +AP+ +T+  M     E+ +  + HG+D  L   G D+Y   +++G +++++
Sbjct: 68  RYVDEVVRDAPF-VTQTSM---IKEYGVSIVAHGNDIVLDSSGQDSYCQVRRMGIFREVE 123

Query: 187 RTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQF 246
           RT G+S+T+IVGR++  +++  +  D  N    +D        D  LS F+ +       
Sbjct: 124 RTFGISTTEIVGRMM--LKNRGSWLDGENGESSKDS----GYHDRLLSLFMSS------- 170

Query: 247 SNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPI 306
               G     +VV++DG FDLFHAGHV  L+ AR +GD+L+VGI+ D+   E+  SY P+
Sbjct: 171 ---MGREKRGKVVFMDGNFDLFHAGHVASLRIARGMGDYLIVGIHDDETTKEYTRSY-PV 226

Query: 307 MHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYE 366
           +   ER L+++ACRYVDE+++ +P+ V  + I    I +V     S+  +   G  D  E
Sbjct: 227 LSTKERMLTLMACRYVDEIVV-SPYLVGSEFIKRHGIDVVAPSFDSKDLSRYDGIKDVVE 285

Query: 367 VAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKA 407
            + +   F  L      +   +  RII+N++ Y  R  K+ 
Sbjct: 286 HSYAENRFNYL------SAEHIVNRIISNYQDYANRQKKRT 320

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|Q9UTI6|ECT1_SCHPO Probable ethanolamine-phosphate cytidylyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC15E1.05c PE=2 SV=1

 Score =  186 bits (471), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 100/283 (35%), Positives = 158/283 (55%), Gaps = 38/283 (13%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           R+++DGC D  HYGH+NA+ QAK LG+ LV+G+ SDEEI  NKGPPV+++EER    +  
Sbjct: 10  RLWLDGCMDFFHYGHSNAILQAKQLGETLVIGIHSDEEITLNKGPPVMTLEERCLSANTC 69

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
           KWVDEV+ +APY    ++M R    +   Y++HGDD     +G D Y  AK   +Y ++K
Sbjct: 70  KWVDEVVPSAPYVFDLEWMRR----YGCQYVVHGDDISTDANGDDCYRFAKAADQYLEVK 125

Query: 187 RTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQF 246
           RTEGVS+T+++ R+LSS+             +   P+  + S+   L +F   S  +  F
Sbjct: 126 RTEGVSTTELLDRLLSSVP----------LEIYSTPVSVLSSQIDLLRRFATDSDGLTPF 175

Query: 247 S-----NCKGP------------GPNARVVYIDGAFDLFHAGHVEILKKARQL--GDFLL 287
           +     N + P             P   ++YIDG +DLF   H+  L+   ++  G  ++
Sbjct: 176 TDVFIYNTEKPETLISGTTLLRLNPEKNIIYIDGDWDLFTEKHISALELCTRMFPGIPIM 235

Query: 288 VGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAP 330
            GI+ D+   E      P+++L ER L++L C+Y+  +++G P
Sbjct: 236 AGIFADEKCFE-----KPMLNLLERILNLLQCKYISSILVGPP 273

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|P33412|ECT1_YEAST Ethanolamine-phosphate cytidylyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ECT1 PE=1 SV=1

 Score =  153 bits (387), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 169/352 (48%), Gaps = 47/352 (13%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKAL----GDELVVGVVSDEEIIANKGPPVLSMEERLAL 122
           +V++DGCFD  H+GHA A+ QA+        +L  GV +DE+I  NKG PV++  ER   
Sbjct: 9   KVWIDGCFDFTHHGHAGAILQARRTVSKENGKLFCGVHTDEDIQHNKGTPVMNSSERYEH 68

Query: 123 VSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRY 182
               +W  EV+  APY     +M++    ++  Y++HGDD  +  +G D Y L K++GR+
Sbjct: 69  TRSNRWCSEVVEAAPYVTDPNWMDK----YQCQYVVHGDDITIDANGEDCYKLVKEMGRF 124

Query: 183 KQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSK-DAHLSQFLPTSR 241
           K +KRT GVS+T+I+ RIL+         D+   +         Q     H   F     
Sbjct: 125 KVVKRTYGVSTTEIIHRILTKKSLPPTHPDYYPTTQELSFYSVAQDAVSKHCYVFQRDLD 184

Query: 242 RIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKAR---QLGDFLLVGIYTDQIVSE 298
            ++     K    +   VY+DG FDLFH G ++ L+K +        L+VGI T    S 
Sbjct: 185 NVLVNGGYKFDAEDC--VYVDGDFDLFHMGDIDQLRKLKMDLHPDKKLIVGITTSDYSS- 241

Query: 299 HRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVH-GTVSETNTP 357
                  IM + ER LSVL+C+YVD VII A        ++ +N C   H GT       
Sbjct: 242 ------TIMTMKERVLSVLSCKYVDAVIIDAD----ATSMSQYN-CEKYHIGTA------ 284

Query: 358 LTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVS 409
                    V  + G F      + +T   + +R+ +  E Y+ RN KK +S
Sbjct: 285 ---------VLTAAGKFS-----EYLTKELIVKRVESQREVYIARNQKKGMS 322

Ethanolamine-phosphate cytidylyltransferase which catalyzes the second step of phosphatidylethanolamine biosynthesis. Involved in the maintenance of plasma membrane and required for proper sporulation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|O74975|PCY1_SCHPO Probable choline-phosphate cytidylyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.02c PE=1 SV=3

 Score =  115 bits (287), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 62/138 (44%), Positives = 84/138 (60%), Gaps = 6/138 (4%)

Query: 66  VRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           VRVY DG FDL H GH   L QAK +     L+VG+ +D+     KG  V++ +ER   +
Sbjct: 102 VRVYADGVFDLFHIGHMRQLEQAKKVFPNVHLIVGLPNDQLTHRLKGLTVMNDKERAEAL 161

Query: 124 SGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYK 183
              KWVDEV+ NAP+ IT +F+     EHKID++ H D P    D  D Y   KKVG++ 
Sbjct: 162 RHCKWVDEVLENAPWVITPEFLE----EHKIDFVAHDDIPYASDDSGDIYLPVKKVGKFI 217

Query: 184 QIKRTEGVSSTDIVGRIL 201
             KRTEGVS++D++ RI+
Sbjct: 218 PTKRTEGVSTSDLITRII 235

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 5

>sp|P49587|PCY1_PLAFK Choline-phosphate cytidylyltransferase OS=Plasmodium falciparum (isolate K1 / Thailand) GN=CTP PE=2 SV=1

 Score =  113 bits (282), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 90/163 (55%), Gaps = 24/163 (14%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDE--LVVGVVSDEEIIANKGPPVLSMEERLA 121
           K V +Y DG +D++H GH   L QAK L +   L+VGV SD E    KG  V ++EER  
Sbjct: 90  KNVVIYADGVYDMLHLGHMKQLEQAKKLFENTTLIVGVTSDNETKLFKGQVVQTLEERTE 149

Query: 122 LVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDP------------------ 163
            +  ++WVDE+I+  P+ +T +F+ +    +KIDY+ H D P                  
Sbjct: 150 TLKHIRWVDEIISPCPWVVTPEFLEK----YKIDYVAHDDIPYANNQKKKKKKKSKGKSF 205

Query: 164 CLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMED 206
               +  D YA  K+ G++K  +RTEGVS+TD++ RIL + ED
Sbjct: 206 SFDEENEDIYAWLKRAGKFKATQRTEGVSTTDLIVRILKNYED 248

Controls phosphatidylcholine synthesis.

Plasmodium falciparum (isolate K1 / Thailand) (taxid: 5839)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
225462533	431	PREDICTED: ethanolamine-phosphate cytidy	0.992	0.974	0.810	0.0
224144239	401	predicted protein [Populus trichocarpa]	0.936	0.987	0.85	0.0
449507378	423	PREDICTED: ethanolamine-phosphate cytidy	0.988	0.988	0.806	0.0
356513223	420	PREDICTED: ethanolamine-phosphate cytidy	0.983	0.990	0.781	0.0
356523761	420	PREDICTED: ethanolamine-phosphate cytidy	0.983	0.990	0.785	0.0
224090479	395	predicted protein [Populus trichocarpa]	0.929	0.994	0.796	0.0
357520661	418	Ethanolamine-phosphate cytidylyltransfer	0.983	0.995	0.775	0.0
217074798	418	unknown [Medicago truncatula] gi|3885155	0.983	0.995	0.773	0.0
357520663	431	Ethanolamine-phosphate cytidylyltransfer	0.983	0.965	0.75	0.0
255570558	377	conserved hypothetical protein [Ricinus	0.843	0.946	0.846	1e-176

>gi|225462533|ref|XP_002265606.1| PREDICTED: ethanolamine-phosphate cytidylyltransferase [Vitis vinifera]

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/432 (81%), Positives = 380/432 (87%), Gaps = 12/432 (2%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGV-FSLPHLWSD--CFHKKK 59
           M++E+NSWIW+G+Y+YPH FGG+MLTAA+LG+STS+FGGI V  SL + W D   FHK+K
Sbjct: 1   MDFENNSWIWEGVYHYPHLFGGIMLTAAVLGLSTSFFGGISVPSSLAYFWPDLGIFHKRK 60

Query: 60  CGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEER 119
            GKK R+RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEER
Sbjct: 61  HGKK-RIRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEER 119

Query: 120 LALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKV 179
           L LVSGLKWVDEVIANAPYAITEQFM+ LFNEHKIDYIIHGDDPCLLPDGTDAYALAKK 
Sbjct: 120 LVLVSGLKWVDEVIANAPYAITEQFMDTLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKA 179

Query: 180 GRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASL---PRDPL-----RAIQSKDA 231
           GRYKQIKRTEGVSSTDIVGRILS ++DTK  EDHN ++     RD          QSK  
Sbjct: 180 GRYKQIKRTEGVSSTDIVGRILSYIKDTKTHEDHNGSTSLHGERDNTNEAEGEKCQSKGL 239

Query: 232 HLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIY 291
           HLS FLPTSRRIVQFSN KGPGPNARVVYIDGAFDLFHAGHVEILK ARQLGDFLLVGI+
Sbjct: 240 HLSHFLPTSRRIVQFSNGKGPGPNARVVYIDGAFDLFHAGHVEILKNARQLGDFLLVGIH 299

Query: 292 TDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTV 351
           TDQ VSEHRG+++PIMHLHERSLSVLACRYVDEVIIGAPW+VTKDMITTFNI LVVHGTV
Sbjct: 300 TDQTVSEHRGAHYPIMHLHERSLSVLACRYVDEVIIGAPWDVTKDMITTFNISLVVHGTV 359

Query: 352 SETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEK 411
           +E+N+ L G  DPYEV KSMGIF +LESPK ITTTSVAQRIIANHEAYMKRN KKA SEK
Sbjct: 360 AESNSFLNGARDPYEVPKSMGIFHMLESPKDITTTSVAQRIIANHEAYMKRNVKKAESEK 419

Query: 412 KYYEQKMFVSGD 423
           KYY +K +VSG+
Sbjct: 420 KYYAEKKYVSGE 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144239|ref|XP_002325231.1| predicted protein [Populus trichocarpa] gi|222866665|gb|EEF03796.1| predicted protein [Populus trichocarpa]

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/400 (85%), Positives = 370/400 (92%), Gaps = 4/400 (1%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDC--FHKKKC 60
           MEYES+S IWDG+YYYPH FGGLMLTAALLG+STSYFGG+G  SLP++WSD   FHKKKC
Sbjct: 1   MEYESSSSIWDGVYYYPHLFGGLMLTAALLGLSTSYFGGLGFSSLPYMWSDLGIFHKKKC 60

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
            +KKR+RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI+ANKGPPVLSMEERL
Sbjct: 61  -QKKRIRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIVANKGPPVLSMEERL 119

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
           ALVSGLKWVDEVIA+APYAITE+FMN LFNEHKIDYIIHGDDPCLLPDGTDAYALAKK G
Sbjct: 120 ALVSGLKWVDEVIADAPYAITEKFMNSLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKAG 179

Query: 181 RYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNAS-LPRDPLRAIQSKDAHLSQFLPT 239
           RYKQIKRTEGVSSTDIVGRILSS++DTKACE+H+++S LP   L+  QS  AH+SQFLPT
Sbjct: 180 RYKQIKRTEGVSSTDIVGRILSSLKDTKACENHDDSSSLPGIALKGSQSNSAHISQFLPT 239

Query: 240 SRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH 299
           SRRIVQFSN KGPGPNARVVYIDGAFDLFHAGHVEIL+ ARQLGDFLLVGI+TDQIVSEH
Sbjct: 240 SRRIVQFSNGKGPGPNARVVYIDGAFDLFHAGHVEILRSARQLGDFLLVGIHTDQIVSEH 299

Query: 300 RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLT 359
           RG  HPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDM+TTFNI LVVHGTV+E N+ L 
Sbjct: 300 RGKGHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMVTTFNITLVVHGTVAENNSLLA 359

Query: 360 GQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAY 399
           G+ DPY V KSM IF++L+SPK+ITTTSVAQRI+ANHEAY
Sbjct: 360 GEPDPYAVPKSMRIFRMLDSPKTITTTSVAQRIVANHEAY 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507378|ref|XP_004163014.1| PREDICTED: ethanolamine-phosphate cytidylyltransferase-like [Cucumis sativus]

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/423 (80%), Positives = 367/423 (86%), Gaps = 5/423 (1%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSD--CFHKKKC 60
           M+YESNSWIWDG+YYYPH FGGLMLTAALLG STSYF GIGV SLP  WSD   F K+K 
Sbjct: 4   MDYESNSWIWDGVYYYPHLFGGLMLTAALLGFSTSYFSGIGVPSLPFFWSDFGIFQKRKS 63

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
            +KKR+RVYMDGCFDLMH+GHANALRQAKALGDELVVGVVSDEEIIANKGPPVL MEERL
Sbjct: 64  -EKKRIRVYMDGCFDLMHFGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLPMEERL 122

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
           ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK G
Sbjct: 123 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKAG 182

Query: 181 RYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTS 240
           RYKQIKRTEGVSSTDIVGRILSSM D    EDHN  SL  D ++   S  A LS FLPTS
Sbjct: 183 RYKQIKRTEGVSSTDIVGRILSSMNDATNSEDHNATSLNGDSMKESPSHGA-LSHFLPTS 241

Query: 241 RRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHR 300
            RIVQFSN +GPGPNAR+VYIDGAFDLFHAGH+EILK ARQLGDFLLVGI+ DQ VS  R
Sbjct: 242 HRIVQFSNGRGPGPNARIVYIDGAFDLFHAGHIEILKIARQLGDFLLVGIHNDQTVSNLR 301

Query: 301 GSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTG 360
           G   PIMHLHERSLSVL CRYVDEVIIGAPWE+T+DMITTFNI LVVHGTV+E N+   G
Sbjct: 302 GKQFPIMHLHERSLSVLGCRYVDEVIIGAPWEITRDMITTFNISLVVHGTVAENNS-FAG 360

Query: 361 QSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFV 420
            SDPY V KSMGIF+LLESPK+ITTTS+A+RI+ANH+A+ KRNAKK  SEKKYY +K ++
Sbjct: 361 DSDPYAVPKSMGIFKLLESPKTITTTSIAKRIVANHDAFKKRNAKKVESEKKYYAEKKYI 420

Query: 421 SGD 423
            GD
Sbjct: 421 CGD 423

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513223|ref|XP_003525313.1| PREDICTED: ethanolamine-phosphate cytidylyltransferase-like [Glycine max]

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/425 (78%), Positives = 379/425 (89%), Gaps = 9/425 (2%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGV--FSLPHLWSDC--FHKK 58
           M+YE+NSWIW+G+ YYP  FGGLM+TAALLG+STSYFGGIGV   SLP  WS+   FHKK
Sbjct: 1   MDYENNSWIWEGVNYYPRVFGGLMVTAALLGLSTSYFGGIGVPYLSLPCSWSNLGIFHKK 60

Query: 59  KCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEE 118
           K GK+ R+RVYMDGCFDLMHYGHANALRQAKALGDELVVG+VSDEEI+ANKGPPVLSMEE
Sbjct: 61  KSGKR-RIRVYMDGCFDLMHYGHANALRQAKALGDELVVGLVSDEEIVANKGPPVLSMEE 119

Query: 119 RLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK 178
           RLALVSGLKWVDEVI +APYAITEQF+NRLF+E+KIDY+IHGDDPCLLPDGTDAYA AKK
Sbjct: 120 RLALVSGLKWVDEVITDAPYAITEQFLNRLFHEYKIDYVIHGDDPCLLPDGTDAYAAAKK 179

Query: 179 VGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLP 238
            GRYKQIKRTEGVSSTDIVGRILSS+ D K C+DHN   +   P    QS+ +H++QFLP
Sbjct: 180 AGRYKQIKRTEGVSSTDIVGRILSSLRDQKNCDDHNGTEV--KPQEENQSQASHIAQFLP 237

Query: 239 TSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSE 298
           TSRRIVQFSN KGPGPN+R+VYIDGAFDLFHAGHVEILK+AR+LGDFLLVGI++D+ VSE
Sbjct: 238 TSRRIVQFSNGKGPGPNSRIVYIDGAFDLFHAGHVEILKRARELGDFLLVGIHSDETVSE 297

Query: 299 HRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPL 358
           HRG+++PIMHLHERSLSVLACRYVDEVIIG+PWE+T DMITTFNI +VVHGTVSE +  L
Sbjct: 298 HRGNHYPIMHLHERSLSVLACRYVDEVIIGSPWEITNDMITTFNISVVVHGTVSEKS--L 355

Query: 359 TGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKM 418
             + DPYE+ KSMGIF+LLESPK ITT +VAQRI+ANHEAY+KRNAKK  SE++YYE+K 
Sbjct: 356 NCELDPYEIPKSMGIFRLLESPKDITTATVAQRIMANHEAYVKRNAKKTRSEQRYYEEKK 415

Query: 419 FVSGD 423
           +VSGD
Sbjct: 416 YVSGD 420

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523761|ref|XP_003530503.1| PREDICTED: ethanolamine-phosphate cytidylyltransferase-like [Glycine max]

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/425 (78%), Positives = 377/425 (88%), Gaps = 9/425 (2%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGV--FSLPHLWSDC--FHKK 58
           M+YE+NSWIW+G+ YYP  FGGLM+TAALLG+STSYFGGIGV   SLP  WS+   FH+K
Sbjct: 1   MDYENNSWIWEGVNYYPCVFGGLMVTAALLGLSTSYFGGIGVPYLSLPCSWSNLGIFHQK 60

Query: 59  KCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEE 118
           K GK+ R+RVYMDGCFDLMHYGHANALRQAKALGDELVVG+VSDEEI+ANKGPPVLSMEE
Sbjct: 61  KSGKR-RIRVYMDGCFDLMHYGHANALRQAKALGDELVVGLVSDEEIVANKGPPVLSMEE 119

Query: 119 RLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK 178
           RLALVSGLKWVDEVI +APYAITEQF+NRLF+E+KIDY+IHGDDPCLLPDGTDAYA AKK
Sbjct: 120 RLALVSGLKWVDEVITDAPYAITEQFLNRLFHEYKIDYVIHGDDPCLLPDGTDAYAAAKK 179

Query: 179 VGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLP 238
            GRYKQIKRTEGVSSTDIVGRILSS+ D K CEDHN   +   P    QSK +H++QFLP
Sbjct: 180 AGRYKQIKRTEGVSSTDIVGRILSSLRDQKNCEDHNGTEV--KPQEENQSKASHIAQFLP 237

Query: 239 TSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSE 298
           TSRRIVQFSN KGPGPNAR+VYIDGAFDLFHAGHVEILK+AR+LGDFLLVGI++D+ VSE
Sbjct: 238 TSRRIVQFSNGKGPGPNARIVYIDGAFDLFHAGHVEILKRARELGDFLLVGIHSDETVSE 297

Query: 299 HRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPL 358
           HRG+++PIMHLHERSLSVLACRYVDEVIIG+PWE+T DMITTFNI +VVHGTV+E    L
Sbjct: 298 HRGNHYPIMHLHERSLSVLACRYVDEVIIGSPWEITNDMITTFNISVVVHGTVAEKT--L 355

Query: 359 TGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKM 418
             + DPYEV KSMGIF LLESPK ITT +VAQRI+ANHEAY+KRNAKK  SE++YYE+K 
Sbjct: 356 NCELDPYEVPKSMGIFHLLESPKDITTATVAQRIMANHEAYVKRNAKKTRSEQRYYEEKK 415

Query: 419 FVSGD 423
           +VSGD
Sbjct: 416 YVSGD 420

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090479|ref|XP_002308992.1| predicted protein [Populus trichocarpa] gi|222854968|gb|EEE92515.1| predicted protein [Populus trichocarpa]

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/423 (79%), Positives = 365/423 (86%), Gaps = 30/423 (7%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSD--CFHKKKC 60
           MEYES+S IWDG+YYYPH FGGLMLTAALLG+STSYFGG+G   LP++WSD   F+KKK 
Sbjct: 1   MEYESSSSIWDGVYYYPHLFGGLMLTAALLGLSTSYFGGLGYSYLPYMWSDLGVFYKKKS 60

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
            +KKR+RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI+ANKGPPVLSMEERL
Sbjct: 61  -EKKRIRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIVANKGPPVLSMEERL 119

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
           ALVSGLKWVDEVIANAPYAITE+FMN LFNEHKIDYIIHGDDPCLLPDGTDAYALAKK G
Sbjct: 120 ALVSGLKWVDEVIANAPYAITEKFMNSLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKAG 179

Query: 181 RYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTS 240
           RYKQIKRTEGVSSTDIVG                            QS  + +SQFLPTS
Sbjct: 180 RYKQIKRTEGVSSTDIVGS---------------------------QSNSSRISQFLPTS 212

Query: 241 RRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHR 300
           RRIVQFSN KGPGPNARVVYIDGAFDLFHAGHVEIL+ ARQLGDFLLVGI+TDQIVSEHR
Sbjct: 213 RRIVQFSNGKGPGPNARVVYIDGAFDLFHAGHVEILRSARQLGDFLLVGIHTDQIVSEHR 272

Query: 301 GSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTG 360
           G  HPIMHLHERSLSVLAC YVDEVIIGAPWEVT+DM+TTFNI LVVHGTV+E+N+ L G
Sbjct: 273 GKGHPIMHLHERSLSVLACSYVDEVIIGAPWEVTRDMVTTFNISLVVHGTVAESNSLLAG 332

Query: 361 QSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFV 420
           + DPY V KSMGIF +L+SPK+ITTTSVAQRI+ANHEAY+KRNAKKA SEKKYY +K+ V
Sbjct: 333 EPDPYAVPKSMGIFWMLDSPKNITTTSVAQRIVANHEAYLKRNAKKAESEKKYYAEKVHV 392

Query: 421 SGD 423
           SGD
Sbjct: 393 SGD 395

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520661|ref|XP_003630619.1| Ethanolamine-phosphate cytidylyltransferase [Medicago truncatula] gi|355524641|gb|AET05095.1| Ethanolamine-phosphate cytidylyltransferase [Medicago truncatula]

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/423 (77%), Positives = 375/423 (88%), Gaps = 7/423 (1%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPH--LWSDCFHKKKC 60
           M+YESNSWIW+G+YYYPH FGGLM+TAALLG+STSYFG IGV SLP    W +   KKK 
Sbjct: 1   MDYESNSWIWEGVYYYPHLFGGLMVTAALLGLSTSYFGVIGVPSLPLPCSWYN-LGKKKK 59

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
             K+RVRVYMDGCFDLMHYGHANALRQAKALGDELVVG+VSDEEI+ANKGPPVLSM+ERL
Sbjct: 60  TGKRRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGLVSDEEIVANKGPPVLSMDERL 119

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
           ALVSGLKWVDEVI +APYAITE F+NRLF+E+ IDY+IHGDDPCLLPDGTDAYA AKK G
Sbjct: 120 ALVSGLKWVDEVITDAPYAITETFLNRLFHEYNIDYVIHGDDPCLLPDGTDAYAAAKKAG 179

Query: 181 RYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTS 240
           RYKQIKRTEGVSSTDIVGRI+SS+++ K CED N   +   P    QSK +H+SQFLPTS
Sbjct: 180 RYKQIKRTEGVSSTDIVGRIMSSLKEQKICEDRNGTDV--KPQEECQSKVSHISQFLPTS 237

Query: 241 RRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHR 300
           RRIVQFSN KGPGPNAR+VYIDGAFDLFHAGHV++LK+AR+LGDFLLVGI++D+ VSE+R
Sbjct: 238 RRIVQFSNGKGPGPNARIVYIDGAFDLFHAGHVQMLKRARELGDFLLVGIHSDETVSENR 297

Query: 301 GSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTG 360
           G+++PIMHLHERSLSVLA RYVDEVIIGAP E+TKDMITTFNI LVVHGTV+E + P   
Sbjct: 298 GNHYPIMHLHERSLSVLASRYVDEVIIGAPLEITKDMITTFNISLVVHGTVAEKSLP--S 355

Query: 361 QSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFV 420
           + DPYEV KS+GIF+LLESPK ITTTSVAQRI+ANH+AY+KRNAKKA SEK+YYE++ +V
Sbjct: 356 EKDPYEVPKSIGIFRLLESPKDITTTSVAQRIMANHDAYVKRNAKKAKSEKRYYEERKYV 415

Query: 421 SGD 423
           SGD
Sbjct: 416 SGD 418

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074798|gb|ACJ85759.1| unknown [Medicago truncatula] gi|388515515|gb|AFK45819.1| unknown [Medicago truncatula]

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/423 (77%), Positives = 374/423 (88%), Gaps = 7/423 (1%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPH--LWSDCFHKKKC 60
           M+YESNSWIW+G+YYYPH FGGLM+TAALLG+STSYFG IGV SLP    W +   KKK 
Sbjct: 1   MDYESNSWIWEGVYYYPHLFGGLMVTAALLGLSTSYFGVIGVPSLPLPCSWYN-LGKKKK 59

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
             K+RV VYMDGCFDLMHYGHANALRQAKALGDELVVG+VSDEEI+ANKGPPVLSM+ERL
Sbjct: 60  TGKRRVHVYMDGCFDLMHYGHANALRQAKALGDELVVGLVSDEEIVANKGPPVLSMDERL 119

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
           ALVSGLKWVDEVI +APYAITE F+NRLF+E+ IDY+IHGDDPCLLPDGTDAYA AKK G
Sbjct: 120 ALVSGLKWVDEVITDAPYAITETFLNRLFHEYNIDYVIHGDDPCLLPDGTDAYAAAKKAG 179

Query: 181 RYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTS 240
           RYKQIKRTEGVSSTDIVGRI+SS+++ K CED N   +   P    QSK +H+SQFLPTS
Sbjct: 180 RYKQIKRTEGVSSTDIVGRIMSSLKEQKICEDRNGTDV--KPQEECQSKVSHISQFLPTS 237

Query: 241 RRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHR 300
           RRIVQFSN KGPGPNAR+VYIDGAFDLFHAGHV++LK+AR+LGDFLLVGI++D+ VSE+R
Sbjct: 238 RRIVQFSNGKGPGPNARIVYIDGAFDLFHAGHVQMLKRARELGDFLLVGIHSDETVSENR 297

Query: 301 GSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTG 360
           G+++PIMHLHERSLSVLA RYVDEVIIGAP E+TKDMITTFNI LVVHGTV+E + P   
Sbjct: 298 GNHYPIMHLHERSLSVLASRYVDEVIIGAPLEITKDMITTFNISLVVHGTVAEKSLP--S 355

Query: 361 QSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFV 420
           + DPYEV KS+GIF+LLESPK ITTTSVAQRI+ANH+AY+KRNAKKA SEK+YYE++ +V
Sbjct: 356 EKDPYEVPKSIGIFRLLESPKDITTTSVAQRIMANHDAYVKRNAKKAKSEKRYYEERKYV 415

Query: 421 SGD 423
           SGD
Sbjct: 416 SGD 418

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520663|ref|XP_003630620.1| Ethanolamine-phosphate cytidylyltransferase [Medicago truncatula] gi|355524642|gb|AET05096.1| Ethanolamine-phosphate cytidylyltransferase [Medicago truncatula]

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/436 (75%), Positives = 374/436 (85%), Gaps = 20/436 (4%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPH--LWSDCFHKKKC 60
           M+YESNSWIW+G+YYYPH FGGLM+TAALLG+STSYFG IGV SLP    W +   KKK 
Sbjct: 1   MDYESNSWIWEGVYYYPHLFGGLMVTAALLGLSTSYFGVIGVPSLPLPCSWYN-LGKKKK 59

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
             K+RVRVYMDGCFDLMHYGHANALRQAKALGDELVVG+VSDEEI+ANKGPPVLSM+ERL
Sbjct: 60  TGKRRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGLVSDEEIVANKGPPVLSMDERL 119

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
           ALVSGLKWVDEVI +APYAITE F+NRLF+E+ IDY+IHGDDPCLLPDGTDAYA AKK G
Sbjct: 120 ALVSGLKWVDEVITDAPYAITETFLNRLFHEYNIDYVIHGDDPCLLPDGTDAYAAAKKAG 179

Query: 181 RYKQIKRTEGVSSTDIV-------------GRILSSMEDTKACEDHNNASLPRDPLRAIQ 227
           RYKQIKRTEGVSSTDI              GRI+SS+++ K CED N   +   P    Q
Sbjct: 180 RYKQIKRTEGVSSTDISSYDEIYTWTSLTHGRIMSSLKEQKICEDRNGTDV--KPQEECQ 237

Query: 228 SKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLL 287
           SK +H+SQFLPTSRRIVQFSN KGPGPNAR+VYIDGAFDLFHAGHV++LK+AR+LGDFLL
Sbjct: 238 SKVSHISQFLPTSRRIVQFSNGKGPGPNARIVYIDGAFDLFHAGHVQMLKRARELGDFLL 297

Query: 288 VGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVV 347
           VGI++D+ VSE+RG+++PIMHLHERSLSVLA RYVDEVIIGAP E+TKDMITTFNI LVV
Sbjct: 298 VGIHSDETVSENRGNHYPIMHLHERSLSVLASRYVDEVIIGAPLEITKDMITTFNISLVV 357

Query: 348 HGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKA 407
           HGTV+E + P   + DPYEV KS+GIF+LLESPK ITTTSVAQRI+ANH+AY+KRNAKKA
Sbjct: 358 HGTVAEKSLP--SEKDPYEVPKSIGIFRLLESPKDITTTSVAQRIMANHDAYVKRNAKKA 415

Query: 408 VSEKKYYEQKMFVSGD 423
            SEK+YYE++ +VSGD
Sbjct: 416 KSEKRYYEERKYVSGD 431

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570558|ref|XP_002526236.1| conserved hypothetical protein [Ricinus communis] gi|223534430|gb|EEF36133.1| conserved hypothetical protein [Ricinus communis]

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 304/359 (84%), Positives = 325/359 (90%), Gaps = 2/359 (0%)

Query: 66  VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
           +RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVL MEERLALVSG
Sbjct: 20  IRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLPMEERLALVSG 79

Query: 126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
           LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK+ GRYKQI
Sbjct: 80  LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKRAGRYKQI 139

Query: 186 KRTEGVSSTDIVGRILSSMEDTKACEDHNNA-SLPRDPLRAIQSKDAHLSQFLPTSRRIV 244
           KRTEGVSSTDIVGRIL +  D K  E H++  SLP D  +  Q    HLSQFLPTSRRIV
Sbjct: 140 KRTEGVSSTDIVGRILFA-NDAKVSECHDDKLSLPGDACKGNQCNSVHLSQFLPTSRRIV 198

Query: 245 QFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYH 304
           QFSN KGPGPNARVVYIDGAFDLFHAGHVEIL+ ARQLGDFLLVGI+TDQIVSEHRG ++
Sbjct: 199 QFSNGKGPGPNARVVYIDGAFDLFHAGHVEILRSARQLGDFLLVGIHTDQIVSEHRGEHY 258

Query: 305 PIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDP 364
           PIMHLHERSLSVLACRYVDEVIIGAPWEV+KDMITTFNI LVVHGTV+E N+ L G SDP
Sbjct: 259 PIMHLHERSLSVLACRYVDEVIIGAPWEVSKDMITTFNISLVVHGTVAECNSLLAGISDP 318

Query: 365 YEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFVSGD 423
           Y V KSMGIF+ LESPK+I T+SVAQRI+ANHEAYMKRN+KKA SEKKYY +K++VSGD
Sbjct: 319 YAVPKSMGIFRTLESPKNIITSSVAQRIVANHEAYMKRNSKKAKSEKKYYAEKVYVSGD 377

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
TAIR|locus:2064123	421	PECT1 "phosphorylethanolamine	0.846	0.850	0.700	9.5e-137
DICTYBASE|DDB_G0270298	360	pctA "cytidylyltransferase dom	0.808	0.95	0.494	5.3e-88
UNIPROTKB|F5H8B1	407	PCYT2 "Ethanolamine-phosphate	0.427	0.444	0.464	1.7e-80
RGD|619970	404	Pcyt2 "phosphate cytidylyltran	0.442	0.462	0.460	2.8e-80
MGI|MGI:1915921	404	Pcyt2 "phosphate cytidylyltran	0.442	0.462	0.455	3.6e-80
UNIPROTKB|Q99447	389	PCYT2 "Ethanolamine-phosphate	0.806	0.876	0.454	3.3e-79
UNIPROTKB|Q5EA75	389	PCYT2 "Ethanolamine-phosphate	0.806	0.876	0.456	1.8e-78
ZFIN|ZDB-GENE-041010-132	397	pcyt2 "phosphate cytidylyltran	0.791	0.843	0.451	3.8e-78
UNIPROTKB|F1PIT0	385	PCYT2 "Uncharacterized protein	0.810	0.890	0.443	4.3e-77
WB|WBGene00021352	377	Y37E3.11 [Caenorhabditis elega	0.801	0.899	0.434	1.7e-75

TAIR|locus:2064123 PECT1 "phosphorylethanolamine cytidylyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1339 (476.4 bits), Expect = 9.5e-137, P = 9.5e-137
 Identities = 257/367 (70%), Positives = 303/367 (82%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             VRVYMDGCFD+MHYGH NALRQA+ALGD+LVVGVVSDEEIIANKGPPV  + ER+ +V  
Sbjct:    55 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDEEIIANKGPPVTPLHERMTMVKA 114

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
             +KWVDEVI++APYAITE FM +LF+E++IDYIIHGDDPC+LPDGTDAYALAKK GRYKQI
Sbjct:   115 VKWVDEVISDAPYAITEDFMKKLFDEYQIDYIIHGDDPCVLPDGTDAYALAKKAGRYKQI 174

Query:   186 KRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRD-------PL--RAIQSKDAHLSQF 236
             KRTEGVSSTDIVGR+L  + +    + H+ +SL R        P       S    +S F
Sbjct:   175 KRTEGVSSTDIVGRMLLCVRERSISDTHSRSSLQRQFSHGHSSPKFEDGASSAGTRVSHF 234

Query:   237 LPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV 296
             LPTSRRIVQFSN KGPGP+AR++YIDGAFDLFHAGHVEIL++AR+LGDFLLVGI+ DQ V
Sbjct:   235 LPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRRARELGDFLLVGIHNDQTV 294

Query:   297 SEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNT 356
             S  RG++ PIM+LHERSLSVLACRYVDEVIIGAPWEV++D ITTF+I LVVHGTV+E++ 
Sbjct:   295 SAKRGAHRPIMNLHERSLSVLACRYVDEVIIGAPWEVSRDTITTFDISLVVHGTVAESDD 354

Query:   357 PLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQ 416
                 + +PY V  SMGIFQ+L+SP  ITT+++ +RI+ANHEAY KRNAKK  SEKKYYEQ
Sbjct:   355 FRKEEDNPYSVPISMGIFQVLDSPLDITTSTIIRRIVANHEAYQKRNAKKEASEKKYYEQ 414

Query:   417 KMFVSGD 423
             K FVSGD
Sbjct:   415 KSFVSGD 421

GO:0003824 "catalytic activity" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=TAS

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

DICTYBASE|DDB_G0270298 pctA "cytidylyltransferase domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 177/358 (49%), Positives = 239/358 (66%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             +RVY+DGCFDLMH+GHANALRQA+ LGD LVVGV +DEEI  NKGPPV++ +ER   V  
Sbjct:    10 IRVYVDGCFDLMHFGHANALRQARELGDILVVGVHTDEEIAKNKGPPVMNEQERYKAVRA 69

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
              KW DEV   APY +TE++++ L      D+ +HG+D  +  DG D Y   KK G+++ I
Sbjct:    70 CKWADEVAEGAPYTLTEEYLDSL----NCDFCVHGEDISVGADGKDVYEGIKKSGKFRFI 125

Query:   186 KRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAI-------QSKDAHLSQFLP 238
             KRTEGVS+T++VGR+L   +D       N +     PL  +       QS    LS FLP
Sbjct:   126 KRTEGVSTTELVGRMLLCTKDHL----QNVSGEQTSPLGGVNPNVLHKQSPYTSLSHFLP 181

Query:   239 TSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSE 298
             T+R+IVQFS  + P PN +++Y+DG FDLFH GH E LK+AR LGD+L+VG++ D++V E
Sbjct:   182 TTRKIVQFSEGRSPKPNDKIIYMDGGFDLFHVGHTEALKQARALGDYLIVGVHDDRVVHE 241

Query:   299 HRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPL 358
              +GS  PIM+LHER LSVL+CRYVDEV+IGAP+ VTKDMI + +I +VVHG       P 
Sbjct:   242 QKGSNFPIMNLHERVLSVLSCRYVDEVVIGAPFSVTKDMIDSLHINVVVHGDDQVVLGP- 300

Query:   359 TGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQ 416
              G  DPY++ + +GI++ ++  + +T T + +RII N   Y  RN KK   E  + EQ
Sbjct:   301 EGGVDPYKLPRELGIYKEVKHTEGLTATEIVKRIIDNRLQYEARNRKKEAKEINFIEQ 358

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=IEA;ISS

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F5H8B1 PCYT2 "Ethanolamine-phosphate cytidylyltransferase" [Homo sapiens (taxid:9606)]

 Score = 434 (157.8 bits), Expect = 1.7e-80, Sum P(2) = 1.7e-80
 Identities = 86/185 (46%), Positives = 125/185 (67%)

Query:   233 LSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGI 290
             +SQFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K  +L +  +++ G+
Sbjct:   208 VSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGL 267

Query:   291 YTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGT 350
             + DQ V+ ++G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT ++++ F + LV HG 
Sbjct:   268 HFDQEVNHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGK 327

Query:   351 VSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSE 410
              +E      G SDPY+  K  GIF+ ++S  ++TT  + QRII N   Y  RN KK   E
Sbjct:   328 -TEIIPDRDG-SDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITNRLEYEARNQKKEAKE 385

Query:   411 KKYYE 415
               + E
Sbjct:   386 LAFLE 390

GO:0009058 "biosynthetic process" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=IEA

RGD|619970 Pcyt2 "phosphate cytidylyltransferase 2, ethanolamine" [Rattus norvegicus (taxid:10116)]

 Score = 426 (155.0 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
 Identities = 88/191 (46%), Positives = 123/191 (64%)

Query:   227 QSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD-- 284
             QS    +SQFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L++  +L    
Sbjct:   202 QSPWTGVSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLQEVHKLAKRP 261

Query:   285 FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNIC 344
             +++ G++ DQ V+ ++G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT +++  F + 
Sbjct:   262 YVIAGLHFDQEVNRYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYSVTAELLNHFKVD 321

Query:   345 LVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNA 404
             LV HG  +E   P    SDPYE  K  GIF  ++S   +TT  + QRII N   Y  RN 
Sbjct:   322 LVCHGK-TEI-VPDRDGSDPYEEPKRRGIFCQIDSGSDLTTDLIVQRIIKNRLEYEARNQ 379

Query:   405 KKAVSEKKYYE 415
             KK   E  + E
Sbjct:   380 KKEAKELAFLE 390

GO:0003824 "catalytic activity" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=IDA

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA;TAS

GO:0009058 "biosynthetic process" evidence=IEA

MGI|MGI:1915921 Pcyt2 "phosphate cytidylyltransferase 2, ethanolamine" [Mus musculus (taxid:10090)]

 Score = 425 (154.7 bits), Expect = 3.6e-80, Sum P(2) = 3.6e-80
 Identities = 87/191 (45%), Positives = 123/191 (64%)

Query:   227 QSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD-- 284
             QS    +SQFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L++  +L    
Sbjct:   202 QSPWTGVSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLQEVHKLAKRP 261

Query:   285 FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNIC 344
             +++ G++ DQ V+ ++G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT +++  F + 
Sbjct:   262 YVIAGLHFDQEVNRYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYSVTAELLNHFKVD 321

Query:   345 LVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNA 404
             LV HG  +E   P    SDPY+  K  GIF  ++S   +TT  + QRII N   Y  RN 
Sbjct:   322 LVCHGK-TEI-VPDRDGSDPYQEPKRRGIFYQIDSGSDLTTDLIVQRIIKNRLEYEARNQ 379

Query:   405 KKAVSEKKYYE 415
             KK   E  + E
Sbjct:   380 KKEAKELAFLE 390

GO:0003824 "catalytic activity" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|Q99447 PCYT2 "Ethanolamine-phosphate cytidylyltransferase" [Homo sapiens (taxid:9606)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 163/359 (45%), Positives = 238/359 (66%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER  +V  
Sbjct:    23 VRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQA 82

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
             +KWVDEV+  APY  T + +++ +N    D+ +HG+D  L  DG D Y   K+ GRY++ 
Sbjct:    83 IKWVDEVVPAAPYVTTLETLDK-YN---CDFCVHGNDITLTVDGRDTYEEVKQAGRYREC 138

Query:   186 KRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLP 238
             KRT+GVS+TD+VGR+L       SS E +    ++ + S  + P    ++    +SQFL 
Sbjct:   139 KRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYAD-SFGKCP--GGRNPWTGVSQFLQ 195

Query:   239 TSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIV 296
             TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K  +L +  +++ G++ DQ V
Sbjct:   196 TSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEV 255

Query:   297 SEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNT 356
             + ++G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT ++++ F + LV HG  +E   
Sbjct:   256 NHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGK-TEIIP 314

Query:   357 PLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYE 415
                G SDPY+  K  GIF+ ++S  ++TT  + QRII N   Y  RN KK   E  + E
Sbjct:   315 DRDG-SDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITNRLEYEARNQKKEAKELAFLE 372

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA;TAS

GO:0008654 "phospholipid biosynthetic process" evidence=TAS

GO:0005575 "cellular_component" evidence=ND

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046474 "glycerophospholipid biosynthetic process" evidence=TAS

UNIPROTKB|Q5EA75 PCYT2 "Ethanolamine-phosphate cytidylyltransferase" [Bos taurus (taxid:9913)]

 Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
 Identities = 164/359 (45%), Positives = 234/359 (65%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER  +V  
Sbjct:    23 VRVWCDGCYDMVHYGHSNQLRQARAMGDHLIVGVHTDEEIAKHKGPPVFTQEERYKMVQA 82

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
             +KWVDEV+  APY  T + +++ +N    D+ +HG+D  L  DG D Y   K+ GRY++ 
Sbjct:    83 IKWVDEVVPAAPYVTTLETLDK-YN---CDFCVHGNDITLTVDGRDTYEEVKQAGRYREC 138

Query:   186 KRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLP 238
             KRT+GVS+TD+VGR+L       SS E +    ++ + S  + P    ++    +SQFL 
Sbjct:   139 KRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYAD-SFGKCP--GGRNPWTGVSQFLQ 195

Query:   239 TSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIV 296
             TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K   L +  +++ G++ DQ V
Sbjct:   196 TSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVYGLAERPYVIAGLHFDQEV 255

Query:   297 SEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNT 356
             + ++G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT +++  F + LV HG  +E   
Sbjct:   256 NHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYSVTAELLDHFKVDLVCHGK-TEV-V 313

Query:   357 PLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYE 415
             P    SDPYE  K  GIF  ++S   +TT  + QRII N   Y  RN KK   E  + E
Sbjct:   314 PDKDGSDPYEEPKRRGIFCQVDSGNDLTTDLIVQRIIKNRLEYEARNQKKEAKELAFQE 372

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-041010-132 pcyt2 "phosphate cytidylyltransferase 2, ethanolamine" [Danio rerio (taxid:7955)]

 Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
 Identities = 160/354 (45%), Positives = 230/354 (64%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             +RV+ DGC+D++HYGH+N LRQAKA+GD LVVGV +DEEI  +KGPPV +  ER  ++  
Sbjct:    31 IRVWCDGCYDMVHYGHSNQLRQAKAMGDYLVVGVHTDEEIAKHKGPPVFTQAERYKMIRA 90

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
             +KWVDE++  APY  T + +++ +N    D+ +HGDD  L  DG D Y   K+ GRY++ 
Sbjct:    91 IKWVDEIVEGAPYVTTLETLDK-YN---CDFCVHGDDITLTVDGKDTYDEVKRTGRYREC 146

Query:   186 KRTEGVSSTDIVGRIL------SSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPT 239
             KRT+GVS+TD+VGR+L       S  D  A + H + +  + P     S    +SQFL T
Sbjct:   147 KRTQGVSTTDLVGRMLLLTKAHHSNIDNAAYQVHTD-NFGKGPKG--HSPWTGVSQFLQT 203

Query:   240 SRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIVS 297
             S++I+QF++ K P P   ++Y+ GAFDLFH GHV+ L+      +  +++VG++ DQ V+
Sbjct:   204 SQKIIQFASGKEPQPGDTIIYVAGAFDLFHIGHVDFLETVHGQAEKPYVIVGLHFDQEVN 263

Query:   298 EHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNT- 356
              ++G  +PIM++HER LSVLACRYV EV+IGAP+ V KD++  F + LV HG   +TN  
Sbjct:   264 RYKGKNYPIMNIHERILSVLACRYVSEVVIGAPYAVEKDLLDHFKVDLVCHG---KTNVF 320

Query:   357 PLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSE 410
             P    +DPY   K  GIF++L+S  ++TT  + QRII N   +  RN KK   E
Sbjct:   321 PDADGTDPYAEPKKRGIFRILDSSNNLTTDDIVQRIIENRLQFEARNQKKEAKE 374

GO:0003824 "catalytic activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1PIT0 PCYT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 160/361 (44%), Positives = 232/361 (64%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER  +V  
Sbjct:    23 VRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEISKHKGPPVFTQEERYKMVRA 82

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
             +KWVDEV+  APY  T + +++    +  D+ +HG+D  L  DG D Y   K  GRY++ 
Sbjct:    83 IKWVDEVVPAAPYVTTLETLDK----YSCDFCVHGNDITLTVDGRDTYEEVKAAGRYREC 138

Query:   186 KRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLP 238
             +RT+GVS+TD+VGR+L       S  E +    ++ + S  + P    ++    +SQFL 
Sbjct:   139 RRTQGVSTTDLVGRMLLVTKAHHSGQEISSEYREYAD-SFGKCP--GGRNPWTGVSQFLQ 195

Query:   239 TSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIV 296
             TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K   L +  +++ G++ DQ V
Sbjct:   196 TSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHGLAERPYVIAGLHFDQEV 255

Query:   297 SEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNT 356
             + ++G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT +++  F + LV HG  +E   
Sbjct:   256 NHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLDHFKVDLVCHGK-TEI-V 313

Query:   357 PLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQ 416
             P    SDPY+  K  GIF  ++S   +TT  + QRII N   Y  RN KK   E  + E 
Sbjct:   314 PDKDGSDPYQEPKRRGIFCQIDSGSDLTTDLIVQRIIKNRLEYEARNQKKEAKELAFLES 373

Query:   417 K 417
             +
Sbjct:   374 R 374

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

WB|WBGene00021352 Y37E3.11 [Caenorhabditis elegans (taxid:6239)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 156/359 (43%), Positives = 231/359 (64%)

Query:    67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
             RV+ DGC+D++H+GHAN LRQAK  G +L+VGV +DEEI  +KGPPV + +ER  +V+G+
Sbjct:    14 RVWADGCYDMVHFGHANQLRQAKQFGQKLIVGVHNDEEIRLHKGPPVFNEQERYRMVAGI 73

Query:   127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
             KWVDEV+ NAPYA T + +++    +  D+ +HGDD  L  DG D Y   K   RY++ K
Sbjct:    74 KWVDEVVENAPYATTVETLDK----YDCDFCVHGDDITLTADGKDTYQEVKDHQRYRECK 129

Query:   187 RTEGVSSTDIVGRILSSMEDTKACEDH--NNASLPRDPLRAI--QSKD-------AHLSQ 235
             RT GVS+TD+VGR+L   ++    ++H   +    R    AI   SKD         +S+
Sbjct:   130 RTCGVSTTDLVGRMLLLTKNHHTQDEHIEQHVERARSLSTAILEYSKDNVAMSPWTRVSR 189

Query:   236 FLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQI 295
             F+PT+  I++F+  + P P  +VVY+ G+FDLFH GH+  L+KA++ GD+L+VGI +DQ 
Sbjct:   190 FIPTTTTILEFAEGRPPKPTDKVVYVTGSFDLFHIGHLAFLEKAKEFGDYLIVGILSDQT 249

Query:   296 VSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETN 355
             V++++GS HPIM +HER LSVLA + V+EV+ GAP+E+T D++  FN+  V++G   + N
Sbjct:   250 VNQYKGSNHPIMSIHERVLSVLAYKPVNEVVFGAPYEITSDILDQFNVQAVING-FRDNN 308

Query:   356 TPLTGQS----DPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSE 410
             + +   S    DP+  AK  GI+  ++S   +TT  +  RII +   Y  RN KK   E
Sbjct:   309 SSVVNSSLASIDPFAEAKRRGIYHEVDSGSDMTTDLIIDRIIHHRLEYETRNKKKEKKE 367

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q55BZ4	PCY2_DICDI	2, ., 7, ., 7, ., 1, 4	0.4958	0.8156	0.9583	yes	no
Q99447	PCY2_HUMAN	2, ., 7, ., 7, ., 1, 4	0.4429	0.8085	0.8791	yes	no
Q5EA75	PCY2_BOVIN	2, ., 7, ., 7, ., 1, 4	0.4453	0.8037	0.8740	yes	no
Q922E4	PCY2_MOUSE	2, ., 7, ., 7, ., 1, 4	0.4345	0.8321	0.8712	yes	no
O88637	PCY2_RAT	2, ., 7, ., 7, ., 1, 4	0.4376	0.8203	0.8589	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.921
3rd Layer	2.7.7.39	LOW CONFIDENCE prediction!
4th Layer	2.7.7.14	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00007159001	SubName- Full=Chromosome undetermined scaffold_184, whole genome shotgun sequence; (431 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00016870001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (377 aa)						•	•		0.922
	GSVIVG00021187001	SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (331 aa)						•	•		0.909
	GSVIVG00008974001	SubName- Full=Chromosome undetermined scaffold_213, whole genome shotgun sequence; (358 aa)						•			0.909
	GSVIVG00002042001	SubName- Full=Chromosome undetermined scaffold_125, whole genome shotgun sequence; (359 aa)						•			0.909
	GSVIVG00017822001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (499 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	423
PLN02406	418	PLN02406, PLN02406, ethanolamine-phosphate cytidyl	0.0
PTZ00308	353	PTZ00308, PTZ00308, ethanolamine-phosphate cytidyl	1e-155
cd02173	152	cd02173, ECT, CTP:phosphoethanolamine cytidylyltra	3e-79
cd02174	150	cd02174, CCT, CTP:phosphocholine cytidylyltransfer	3e-75
COG0615	140	COG0615, TagD, Cytidylyltransferase [Cell envelope	2e-40
cd02170	136	cd02170, cytidylyltransferase, cytidylyltransferas	9e-38
cd02174	150	cd02174, CCT, CTP:phosphocholine cytidylyltransfer	2e-35
cd02173	152	cd02173, ECT, CTP:phosphoethanolamine cytidylyltra	1e-34
PLN02413	294	PLN02413, PLN02413, choline-phosphate cytidylyltra	3e-34
PTZ00308	353	PTZ00308, PTZ00308, ethanolamine-phosphate cytidyl	7e-26
COG0615	140	COG0615, TagD, Cytidylyltransferase [Cell envelope	2e-24
cd02170	136	cd02170, cytidylyltransferase, cytidylyltransferas	6e-24
PLN02413	294	PLN02413, PLN02413, choline-phosphate cytidylyltra	3e-23
TIGR02199	144	TIGR02199, rfaE_dom_II, rfaE bifunctional protein,	8e-19
TIGR00125	66	TIGR00125, cyt_tran_rel, cytidyltransferase-like d	8e-19
TIGR00125	66	TIGR00125, cyt_tran_rel, cytidyltransferase-like d	7e-16
cd02171	129	cd02171, G3P_Cytidylyltransferase, glycerol-3-phos	1e-15
COG2870	467	COG2870, RfaE, ADP-heptose synthase, bifunctional	7e-15
TIGR01518	125	TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate c	2e-14
PRK11316	473	PRK11316, PRK11316, bifunctional heptose 7-phospha	4e-14
TIGR01518	125	TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate c	5e-14
pfam01467	148	pfam01467, CTP_transf_2, Cytidylyltransferase	6e-14
cd02172	144	cd02172, RfaE_N, N-terminal domain of RfaE	8e-14
TIGR02199	144	TIGR02199, rfaE_dom_II, rfaE bifunctional protein,	1e-13
cd02171	129	cd02171, G3P_Cytidylyltransferase, glycerol-3-phos	6e-13
cd02172	144	cd02172, RfaE_N, N-terminal domain of RfaE	4e-12
COG2870	467	COG2870, RfaE, ADP-heptose synthase, bifunctional	1e-10
PRK00777	153	PRK00777, PRK00777, phosphopantetheine adenylyltra	4e-10
pfam01467	148	pfam01467, CTP_transf_2, Cytidylyltransferase	5e-10
PRK11316	473	PRK11316, PRK11316, bifunctional heptose 7-phospha	2e-09
PRK00777	153	PRK00777, PRK00777, phosphopantetheine adenylyltra	2e-08
COG1019	158	COG1019, COG1019, Predicted nucleotidyltransferase	1e-05
PRK01170	322	PRK01170, PRK01170, phosphopantetheine adenylyltra	1e-04
cd02156	105	cd02156, nt_trans, nucleotidyl transferase superfa	2e-04
cd02064	180	cd02064, FAD_synthetase_N, FAD synthetase, N-termi	2e-04
PRK01170	322	PRK01170, PRK01170, phosphopantetheine adenylyltra	5e-04
cd02163	153	cd02163, PPAT, Phosphopantetheine adenylyltransfer	7e-04
TIGR01510	155	TIGR01510, coaD_prev_kdtB, pantetheine-phosphate a	7e-04
COG1019	158	COG1019, COG1019, Predicted nucleotidyltransferase	8e-04
COG0669	159	COG0669, CoaD, Phosphopantetheine adenylyltransfer	0.002
COG0196	304	COG0196, RibF, FAD synthase [Coenzyme metabolism]	0.002
PRK00168	159	PRK00168, coaD, phosphopantetheine adenylyltransfe	0.003

>gnl|CDD|215227 PLN02406, PLN02406, ethanolamine-phosphate cytidylyltransferase

 Score =  719 bits (1858), Expect = 0.0
 Identities = 297/422 (70%), Positives = 335/422 (79%), Gaps = 11/422 (2%)

Query: 9   SWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRV 68
             I    Y      GGLML A++LG+S + FG     SLP+ W D    KK  KKK VRV
Sbjct: 1   MSISSAKYVASCLIGGLMLGASVLGLSLAGFG----SSLPYAWPDLGIFKKKKKKKPVRV 56

Query: 69  YMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW 128
           YMDGCFD+MHYGHANALRQA+ALGDELVVGVVSDEEIIANKGPPV  M ER+ +VSG+KW
Sbjct: 57  YMDGCFDMMHYGHANALRQARALGDELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKW 116

Query: 129 VDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT 188
           VDEVI +APYAITE+FMN+LFNE+ IDYIIHGDDPCLLPDGTDAYALAKK GRYKQIKRT
Sbjct: 117 VDEVIPDAPYAITEEFMNKLFNEYNIDYIIHGDDPCLLPDGTDAYALAKKAGRYKQIKRT 176

Query: 189 EGVSSTDIVGRILSSMEDTKACEDHNNASLPRD-------PLRAIQSKDAHLSQFLPTSR 241
           EGVSSTDIVGR+L  + +    + HN++SL R                   +S FLPTSR
Sbjct: 177 EGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHSQFEDGGSGSGTRVSHFLPTSR 236

Query: 242 RIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRG 301
           RIVQFSN KGPGP+AR+VYIDGAFDLFHAGHVEIL+ AR LGDFLLVGI+TDQ VS HRG
Sbjct: 237 RIVQFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRG 296

Query: 302 SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQ 361
           ++ PIM+LHERSLSVLACRYVDEVIIGAPWEV+KDMITTFNI LVVHGTV+E N  L G+
Sbjct: 297 AHRPIMNLHERSLSVLACRYVDEVIIGAPWEVSKDMITTFNISLVVHGTVAENNDFLKGE 356

Query: 362 SDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFVS 421
            DPY V KSMGIFQ+LESP  ITT+++ +RI+ANHEAY KRN KKA SEK+YYE K FVS
Sbjct: 357 DDPYAVPKSMGIFQVLESPLDITTSTIIRRIVANHEAYQKRNEKKAESEKRYYESKSFVS 416

Query: 422 GD 423
           GD
Sbjct: 417 GD 418

Length = 418

>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase; Provisional

 Score =  441 bits (1137), Expect = e-155
 Identities = 172/353 (48%), Positives = 242/353 (68%), Gaps = 13/353 (3%)

Query: 66  VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
           +RV++DGCFD++H+GHANALRQA+ALGDEL VG  SDEEI+ NKGPPV+  EER   +  
Sbjct: 12  IRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGPPVMHQEERYEALRA 71

Query: 126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
            KWVDEV+   PY    + + RL    + D+++HGDD  +  +G ++Y      G++K +
Sbjct: 72  CKWVDEVVEGYPYTTRLEDLERL----ECDFVVHGDDISVDLNGRNSYQEIIDAGKFKVV 127

Query: 186 KRTEGVSSTDIVGRILSSMEDTKAC-EDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIV 244
           KRTEG+S+TD+VGR+L        C + H   S+    L +        S  L TSR+IV
Sbjct: 128 KRTEGISTTDLVGRML-------LCTKSHLLKSVDEVQLESSLFPYTPTSHCLTTSRKIV 180

Query: 245 QFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYH 304
           QFSN + P P  R+VY+DG+FDLFH GH+ +L+KAR+LGD+L+VG++ DQ+V+E +GS +
Sbjct: 181 QFSNNRSPKPGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQKGSNY 240

Query: 305 PIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDP 364
           PIM+L+ER L VL+CRYVDEV+IGAP++VTK++I + +I +VV G  S+      G SDP
Sbjct: 241 PIMNLNERVLGVLSCRYVDEVVIGAPFDVTKEVIDSLHINVVVGGKFSDLVNE-EGGSDP 299

Query: 365 YEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQK 417
           YEV K+MGIF+ ++S   +TT S+  R++ N  A++KR AKK   E K  E K
Sbjct: 300 YEVPKAMGIFKEVDSGCDLTTDSIVDRVVKNRLAFLKRQAKKRAKEIKSQEIK 352

Length = 353

>gnl|CDD|173924 cd02173, ECT, CTP:phosphoethanolamine cytidylyltransferase (ECT)

 Score =  241 bits (617), Expect = 3e-79
 Identities = 88/152 (57%), Positives = 114/152 (75%), Gaps = 1/152 (0%)

Query: 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSL 314
             +VVY+DGAFDLFH GH+E L+KAR+LGD+L+VG++ DQ V+E++GS +PIM+LHER L
Sbjct: 1   GDKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVL 60

Query: 315 SVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIF 374
           SVLACRYVDEV+IGAP+ +TK++I  F I +VVHG   ET   L G+ DPY V K MGIF
Sbjct: 61  SVLACRYVDEVVIGAPYVITKELIEHFKIDVVVHGKTEETPDSLDGE-DPYAVPKEMGIF 119

Query: 375 QLLESPKSITTTSVAQRIIANHEAYMKRNAKK 406
           + ++S   +TT  +  RII N  AY  RN KK
Sbjct: 120 KEIDSGSDLTTRDIVNRIIKNRLAYEARNKKK 151

CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini. Length = 152

>gnl|CDD|173925 cd02174, CCT, CTP:phosphocholine cytidylyltransferase

 Score =  230 bits (590), Expect = 3e-75
 Identities = 84/145 (57%), Positives = 103/145 (71%), Gaps = 6/145 (4%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLA 121
           + VRVY+DGCFDL HYGHANALRQAK LG  D L+VGV SDEEI  +KGPPV++ EER  
Sbjct: 1   RPVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYE 60

Query: 122 LVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR 181
            V   KWVDEV+  APY  T +F+++    +K DY+ HGDD  L  DG D Y   K  GR
Sbjct: 61  AVRHCKWVDEVVEGAPYVTTPEFLDK----YKCDYVAHGDDIYLDADGEDCYQEVKDAGR 116

Query: 182 YKQIKRTEGVSSTDIVGRILSSMED 206
           +K++KRTEGVS+TD++GRIL    D
Sbjct: 117 FKEVKRTEGVSTTDLIGRILLDYRD 141

CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity. Length = 150

>gnl|CDD|223688 COG0615, TagD, Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]

 Score =  140 bits (356), Expect = 2e-40
 Identities = 59/144 (40%), Positives = 84/144 (58%), Gaps = 13/144 (9%)

Query: 66  VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKGPPVLSMEERLALVS 124
            RV+ DG FD++H GH   LRQAK LGDEL+V V  DE +I   K  P++  E+R  ++ 
Sbjct: 2   KRVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVLE 61

Query: 125 GLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQ 184
            L++VDEVI  AP+ I  + +     E+K D ++ GDD     +    Y L  K G + +
Sbjct: 62  SLRYVDEVILGAPWDIKFEDI----EEYKPDIVVLGDDQ-KFDEDDLKYEL-VKRGLFVE 115

Query: 185 IKRTEGV------SSTDIVGRILS 202
           +KRTEGV      S++DI+ RIL 
Sbjct: 116 VKRTEGVSTCELISTSDIIKRILE 139

Length = 140

>gnl|CDD|173921 cd02170, cytidylyltransferase, cytidylyltransferase

 Score =  133 bits (336), Expect = 9e-38
 Identities = 58/138 (42%), Positives = 79/138 (57%), Gaps = 7/138 (5%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           RVY  G FD++H GH   L +AK LGD L+VGV  DE +   K  P+L  E+R  +V  L
Sbjct: 3   RVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKRRPILPEEQRAEVVEAL 62

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI- 185
           K+VDEVI   P++  +        E K D I+ GDD     D  + Y   KK G+  ++ 
Sbjct: 63  KYVDEVILGHPWSYFKP-----LEELKPDVIVLGDDQKNGVDEEEVYEELKKRGKVIEVP 117

Query: 186 -KRTEGVSSTDIVGRILS 202
            K+TEG+SS+DI+ RIL 
Sbjct: 118 RKKTEGISSSDIIKRILE 135

The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates. Length = 136

>gnl|CDD|173925 cd02174, CCT, CTP:phosphocholine cytidylyltransferase

 Score =  127 bits (321), Expect = 2e-35
 Identities = 51/151 (33%), Positives = 89/151 (58%), Gaps = 7/151 (4%)

Query: 259 VYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV 316
           VY+DG FDLFH GH   L++A++LG  D+L+VG+++D+ + +H+G   P+M   ER  +V
Sbjct: 5   VYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKG--PPVMTEEERYEAV 62

Query: 317 LACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQL 376
             C++VDEV+ GAP+  T + +  +    V HG   +         D Y+  K  G F+ 
Sbjct: 63  RHCKWVDEVVEGAPYVTTPEFLDKYKCDYVAHG---DDIYLDADGEDCYQEVKDAGRFKE 119

Query: 377 LESPKSITTTSVAQRIIANHEAYMKRNAKKA 407
           ++  + ++TT +  RI+ ++  Y +RN ++ 
Sbjct: 120 VKRTEGVSTTDLIGRILLDYRDYHRRNLQRG 150

CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity. Length = 150

>gnl|CDD|173924 cd02173, ECT, CTP:phosphoethanolamine cytidylyltransferase (ECT)

 Score =  125 bits (316), Expect = 1e-34
 Identities = 54/138 (39%), Positives = 82/138 (59%), Gaps = 8/138 (5%)

Query: 68  VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP--PVLSMEERLALVSG 125
           VY+DG FDL H GH   L +A+ LGD L+VGV  D+ +   KG   P++++ ER+  V  
Sbjct: 5   VYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLA 64

Query: 126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDP--CLLPDGTDAYALAKKVGRYK 183
            ++VDEV+  APY IT++ +       KID ++HG         DG D YA+ K++G +K
Sbjct: 65  CRYVDEVVIGAPYVITKELIEHF----KIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFK 120

Query: 184 QIKRTEGVSSTDIVGRIL 201
           +I     +++ DIV RI+
Sbjct: 121 EIDSGSDLTTRDIVNRII 138

CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini. Length = 152

>gnl|CDD|215229 PLN02413, PLN02413, choline-phosphate cytidylyltransferase

 Score =  128 bits (324), Expect = 3e-34
 Identities = 61/140 (43%), Positives = 89/140 (63%), Gaps = 8/140 (5%)

Query: 66  VRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           VRVY DG +DL H+GHA +L QAK L     L+VG  +DE     KG  V++ +ER   +
Sbjct: 28  VRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESL 87

Query: 124 SGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGT--DAYALAKKVGR 181
              KWVDEVI +AP+ IT++F+++    H+IDY+ H   P     G   D Y   KK+G+
Sbjct: 88  RHCKWVDEVIPDAPWVITQEFLDK----HRIDYVAHDALPYADASGAGKDVYEFVKKIGK 143

Query: 182 YKQIKRTEGVSSTDIVGRIL 201
           +K+ KRT+G+S++DI+ RI+
Sbjct: 144 FKETKRTDGISTSDIIMRIV 163

Length = 294

>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase; Provisional

 Score =  107 bits (268), Expect = 7e-26
 Identities = 47/164 (28%), Positives = 89/164 (54%), Gaps = 5/164 (3%)

Query: 254 PNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERS 313
           P    V++DG FD+ H GH   L++AR LGD L VG ++D+ +  ++G   P+MH  ER 
Sbjct: 9   PGTIRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGP--PVMHQEERY 66

Query: 314 LSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGI 373
            ++ AC++VDEV+ G P+    + +       VVHG   + +  L G+ + Y+     G 
Sbjct: 67  EALRACKWVDEVVEGYPYTTRLEDLERLECDFVVHG--DDISVDLNGR-NSYQEIIDAGK 123

Query: 374 FQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQK 417
           F++++  + I+TT +  R++   ++++ ++  +   E   +   
Sbjct: 124 FKVVKRTEGISTTDLVGRMLLCTKSHLLKSVDEVQLESSLFPYT 167

Length = 353

>gnl|CDD|223688 COG0615, TagD, Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]

 Score = 97.7 bits (244), Expect = 2e-24
 Identities = 47/144 (32%), Positives = 80/144 (55%), Gaps = 18/144 (12%)

Query: 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA 318
           V+ DG FD+ H GH+E L++A++LGD L+V +  D+ V + +    PIM   +R+  + +
Sbjct: 4   VWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKR-KPIMPEEQRAEVLES 62

Query: 319 CRYVDEVIIGAPWEVTKDMITTFNICLVVHG---TVSETNTPLTGQSDPYEVAKSMGIF- 374
            RYVDEVI+GAPW++  + I  +   +VV G      E           YE+ K  G+F 
Sbjct: 63  LRYVDEVILGAPWDIKFEDIEEYKPDIVVLGDDQKFDE-------DDLKYELVK-RGLFV 114

Query: 375 -----QLLESPKSITTTSVAQRII 393
                + + + + I+T+ + +RI+
Sbjct: 115 EVKRTEGVSTCELISTSDIIKRIL 138

Length = 140

>gnl|CDD|173921 cd02170, cytidylyltransferase, cytidylyltransferase

 Score = 96.2 bits (240), Expect = 6e-24
 Identities = 43/139 (30%), Positives = 76/139 (54%), Gaps = 8/139 (5%)

Query: 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL 317
            VY  G FD+ H GH+  L++A++LGD+L+VG+  D+ V++ +    PI+   +R+  V 
Sbjct: 3   RVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKRR--PILPEEQRAEVVE 60

Query: 318 ACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLL 377
           A +YVDEVI+G PW   K +       ++V G   +    +  + + YE  K  G    +
Sbjct: 61  ALKYVDEVILGHPWSYFKPLEELKP-DVIVLG--DDQKNGVDEE-EVYEELKKRGKVIEV 116

Query: 378 ESPKS--ITTTSVAQRIIA 394
              K+  I+++ + +RI+ 
Sbjct: 117 PRKKTEGISSSDIIKRILE 135

The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates. Length = 136

>gnl|CDD|215229 PLN02413, PLN02413, choline-phosphate cytidylyltransferase

 Score = 98.9 bits (246), Expect = 3e-23
 Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 7/166 (4%)

Query: 250 KGPGPNARV--VYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHP 305
               P+ R   VY DG +DLFH GH   L++A++L    +LLVG   D++  +++G    
Sbjct: 19  PSSSPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGK--T 76

Query: 306 IMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPY 365
           +M   ER  S+  C++VDEVI  APW +T++ +    I  V H  +   +    G+ D Y
Sbjct: 77  VMTEDERYESLRHCKWVDEVIPDAPWVITQEFLDKHRIDYVAHDALPYADASGAGK-DVY 135

Query: 366 EVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEK 411
           E  K +G F+  +    I+T+ +  RI+ ++  Y+ RN  +  S K
Sbjct: 136 EFVKKIGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLARGYSRK 181

Length = 294

>gnl|CDD|131254 TIGR02199, rfaE_dom_II, rfaE bifunctional protein, domain II

 Score = 82.4 bits (204), Expect = 8e-19
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 27/153 (17%)

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP--PVLSMEE 118
            + K++ V+ +GCFD++H GH + L+QA+ALGD LVVGV SD  +   KG   P+   E+
Sbjct: 8   ARGKKI-VFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEED 66

Query: 119 RLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK 178
           R  +++ L  VD V+              +F+E   + +I    P +L  G D Y +   
Sbjct: 67  RAEVLAALSSVDYVV--------------IFDEDTPEELIGELKPDILVKGGD-YKVETL 111

Query: 179 V---------GRYKQIKRTEGVSSTDIVGRILS 202
           V         G+   +   EG S+T I+ +IL 
Sbjct: 112 VGAELVESYGGQVVLLPFVEGRSTTAIIEKILK 144

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 144

>gnl|CDD|232837 TIGR00125, cyt_tran_rel, cytidyltransferase-like domain

 Score = 79.6 bits (197), Expect = 8e-19
 Identities = 33/66 (50%), Positives = 42/66 (63%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
            V   G FD  H GH + L +AK L DEL+VGV SD+ +   KG PV S+EERL ++  L
Sbjct: 1   IVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPVFSLEERLEMLKAL 60

Query: 127 KWVDEV 132
           K+VDE 
Sbjct: 61  KYVDEN 66

Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Length = 66

>gnl|CDD|232837 TIGR00125, cyt_tran_rel, cytidyltransferase-like domain

 Score = 71.6 bits (176), Expect = 7e-16
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL 317
           +V   G FD FH GH+++L++A++L D L+VG+ +DQ V+  +G   P+  L ER   + 
Sbjct: 1   IVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKG--EPVFSLEERLEMLK 58

Query: 318 ACRYVDEV 325
           A +YVDE 
Sbjct: 59  ALKYVDEN 66

Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Length = 66

>gnl|CDD|173922 cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase

 Score = 72.9 bits (179), Expect = 1e-15
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQI-VSEHRGSYHPIMHLHERSL 314
            +VV   G FDL H GH+ +L++A+ LGD L+V + TD+    + + +  P      R+ 
Sbjct: 1   MKVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFNAGKGKKAVIPYEQ---RAE 57

Query: 315 SVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
            + + RYVD VI    WE   + I  +N+ + V G
Sbjct: 58  ILESIRYVDLVIPETNWEQKIEDIKKYNVDVFVMG 92

Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase. Length = 129

>gnl|CDD|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 75.8 bits (187), Expect = 7e-15
 Identities = 50/144 (34%), Positives = 73/144 (50%), Gaps = 26/144 (18%)

Query: 68  VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP--PVLSMEERLALVSG 125
           V+ +GCFD++H GH   L QA+ALGD L+VGV SD  +   KG   P+ S E+R A+++ 
Sbjct: 335 VFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAA 394

Query: 126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----- 180
           L+ VD V+              +F+E   + +I    P +L  G D Y + K VG     
Sbjct: 395 LESVDLVV--------------IFDEDTPEELIEAVKPDILVKGGD-YKIEKIVGADIVE 439

Query: 181 ----RYKQIKRTEGVSSTDIVGRI 200
                   I   EG S+T I+ +I
Sbjct: 440 AYGGEVLLIPFEEGKSTTKIIEKI 463

Length = 467

>gnl|CDD|130581 TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate cytidylyltransferase

 Score = 69.1 bits (169), Expect = 2e-14
 Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 4/92 (4%)

Query: 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQI-VSEHRGSYHPIMHLHERSLSVL 317
           V   G FDL H GH+ +L++A+QLGD+L+V + TD+  + + + +YH   H   R L + 
Sbjct: 1   VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEH---RKLILE 57

Query: 318 ACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
             RYVD VI    WE  K  I  FNI + V G
Sbjct: 58  TIRYVDLVIPEKSWEQKKQDIIDFNIDVFVMG 89

This model describes glycerol-3-phosphate cytidyltransferase, also called CDP-glycerol pyrophosphorylase. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 125

>gnl|CDD|183085 PRK11316, PRK11316, bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional

 Score = 73.3 bits (181), Expect = 4e-14
 Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 67  RVYM-DGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP--PVLSMEERLALV 123
           ++ M +GCFD++H GH + L  A+ LGD L+V V SD  +   KG   PV  +E+R+A++
Sbjct: 341 KIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVL 400

Query: 124 SGLKWVDEVIA 134
           + L+ VD V+ 
Sbjct: 401 AALEAVDWVVP 411

Length = 473

>gnl|CDD|130581 TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate cytidylyltransferase

 Score = 68.4 bits (167), Expect = 5e-14
 Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 8/125 (6%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131
           G FDL+H+GH N L +AK LGD L+V + +DE  +  +     S E R  ++  +++VD 
Sbjct: 5   GTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDL 64

Query: 132 VIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGV 191
           VI    +   +Q +     +  ID  + GDD     +G   +   +   +   + RTEGV
Sbjct: 65  VIPEKSWEQKKQDI----IDFNIDVFVMGDD----WEGKFDFLKDECPLKVVYLPRTEGV 116

Query: 192 SSTDI 196
           S+T I
Sbjct: 117 STTKI 121

This model describes glycerol-3-phosphate cytidyltransferase, also called CDP-glycerol pyrophosphorylase. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 125

>gnl|CDD|216517 pfam01467, CTP_transf_2, Cytidylyltransferase

 Score = 68.6 bits (168), Expect = 6e-14
 Identities = 40/150 (26%), Positives = 50/150 (33%), Gaps = 25/150 (16%)

Query: 71  DGCFDLMHYGHANALRQAKALGDEL-VVGVVSDEEIIANKGPPVLSMEERLALVSGLKWV 129
            G FD +H GH   L QAK L D   +VGV SDE         + S EERL ++     V
Sbjct: 3   GGTFDPIHLGHLRLLEQAKELFDLDKIVGVPSDES-PHKDTKNLFSAEERLEMLELALEV 61

Query: 130 DEVIANAP------YAITEQFMNRLFN----------EHKIDYIIHGDDPCLLPDGTDA- 172
           D  +          Y I                    E +I  +    D  L        
Sbjct: 62  DPNLEVDDFEDLDVYFIIGADALVNLRGWRGVTELLPEFQIVVVNRPLDYGLETVFLREE 121

Query: 173 ---YALAKKVGRYKQIKRTEGVSSTDIVGR 199
              Y L K V           +SST+I  R
Sbjct: 122 LDKYPLGKIVIPDLPYND---ISSTEIRER 148

This family includes: Cholinephosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase. Length = 148

>gnl|CDD|173923 cd02172, RfaE_N, N-terminal domain of RfaE

 Score = 67.8 bits (166), Expect = 8e-14
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131
           G FDL+H GH   L+ A++LGD LVV + SD  +    G P+   + R  +++ L +VD 
Sbjct: 11  GVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAALGFVDY 70

Query: 132 V-IANAPYAITEQFMNRL---FNEHKIDYIIHGDD 162
           V + + P A   + ++ L         DY    +D
Sbjct: 71  VVLFDNPTA--LEIIDALQPNIYVKGGDYENPEND 103

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose . Length = 144

>gnl|CDD|131254 TIGR02199, rfaE_dom_II, rfaE bifunctional protein, domain II

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 4/73 (5%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERS--L 314
           ++V+ +G FD+ HAGHV  L++AR LGD L+VG+ +D  V   +G   PI    +R+  L
Sbjct: 12  KIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVL 71

Query: 315 SVLACRYVDEVII 327
           + L+   VD V+I
Sbjct: 72  AALSS--VDYVVI 82

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 144

>gnl|CDD|173922 cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase

 Score = 65.2 bits (159), Expect = 6e-13
 Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 12/133 (9%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           K V  Y  G FDL+H GH N L +AKALGD+L+V V +DE         V+  E+R  ++
Sbjct: 2   KVVITY--GTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFNAGKGKKAVIPYEQRAEIL 59

Query: 124 SGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYK 183
             +++VD VI   P    EQ +  +   + +D  + GD      D    +   K+     
Sbjct: 60  ESIRYVDLVI---PETNWEQKIEDIKK-YNVDVFVMGD------DWEGKFDFLKEYCEVV 109

Query: 184 QIKRTEGVSSTDI 196
            + RT+G+SST +
Sbjct: 110 YLPRTKGISSTQL 122

Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase. Length = 129

>gnl|CDD|173923 cd02172, RfaE_N, N-terminal domain of RfaE

 Score = 63.2 bits (154), Expect = 4e-12
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSL 314
              VV   G FDL H GHV  L+ AR LGD L+V + +D+ V+  +G   PI     R+ 
Sbjct: 3   GKTVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVN--KGPGRPIFPEDLRAE 60

Query: 315 SVLACRYVDEVII 327
            + A  +VD V++
Sbjct: 61  VLAALGFVDYVVL 73

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose . Length = 144

>gnl|CDD|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 4/73 (5%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERS--L 314
           +VV+ +G FD+ HAGHV  L +AR LGD L+VG+ +D  V   +G   PI    +R+  L
Sbjct: 333 KVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVL 392

Query: 315 SVLACRYVDEVII 327
           + L    VD V+I
Sbjct: 393 AALES--VDLVVI 403

Length = 467

>gnl|CDD|234834 PRK00777, PRK00777, phosphopantetheine adenylyltransferase; Provisional

 Score = 57.5 bits (140), Expect = 4e-10
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131
           G FD +H GH   LR+A  LG  + +G+ SDE   + K   V   E RL  +   K++  
Sbjct: 8   GTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKKHKVRPYEVRLKNL--KKFLKA 65

Query: 132 VIANAPYAITE 142
           V  +  Y I +
Sbjct: 66  VEYDREYEIVK 76

Length = 153

>gnl|CDD|216517 pfam01467, CTP_transf_2, Cytidylyltransferase

 Score = 57.1 bits (138), Expect = 5e-10
 Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 26/153 (16%)

Query: 260 YIDGAFDLFHAGHVEILKKARQLGDFL-LVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA 318
              G FD  H GH+ +L++A++L D   +VG+ +D+  S H+ +   +    ER   +  
Sbjct: 1   LFGGTFDPIHLGHLRLLEQAKELFDLDKIVGVPSDE--SPHKDTK-NLFSAEERLEMLEL 57

Query: 319 CRYVDE-------------VIIGAP-------WEVTKDMITTFNICLVVHGTVSETNTPL 358
              VD               IIGA        W    +++  F I +V         T  
Sbjct: 58  ALEVDPNLEVDDFEDLDVYFIIGADALVNLRGWRGVTELLPEFQIVVVNRPLDYGLETVF 117

Query: 359 TGQSDPYEVAKSMGIFQLLESPKSITTTSVAQR 391
               +  +      I         I++T + +R
Sbjct: 118 --LREELDKYPLGKIVIPDLPYNDISSTEIRER 148

This family includes: Cholinephosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase. Length = 148

>gnl|CDD|183085 PRK11316, PRK11316, bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional

 Score = 59.1 bits (144), Expect = 2e-09
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERS--L 314
           ++V  +G FD+ HAGHV  L  AR+LGD L+V + +D  V   +G   P+  L +R   L
Sbjct: 341 KIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVL 400

Query: 315 SVLACRYVDEVI 326
           + L    VD V+
Sbjct: 401 AALEA--VDWVV 410

Length = 473

>gnl|CDD|234834 PRK00777, PRK00777, phosphopantetheine adenylyltransferase; Provisional

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA 318
           V + G FD  H GH  +L+KA +LG  + +G+ +D+    ++   H +     R  ++  
Sbjct: 4   VAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKK--HKVRPYEVRLKNLK- 60

Query: 319 CRYVDEVIIGAPWEVTK 335
            +++  V     +E+ K
Sbjct: 61  -KFLKAVEYDREYEIVK 76

Length = 153

>gnl|CDD|223950 COG1019, COG1019, Predicted nucleotidyltransferase [General function prediction only]

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 20/103 (19%)

Query: 62  KKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLA 121
           K K ++V + G FD +H GH   L  A  +GD + +G+ SDE     K   +   E RL 
Sbjct: 2   KIKFMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYEVRLR 61

Query: 122 LVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPC 164
            +                    F+  +  ++  + I+  DDP 
Sbjct: 62  NLR------------------NFLESIKADY--EEIVPIDDPY 84

Length = 158

>gnl|CDD|234912 PRK01170, PRK01170, phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPV 113
              + G F  +H GH   L++A   GDE+V+G+ SDE +  NK  P+
Sbjct: 2   ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKVYPI 48

Length = 322

>gnl|CDD|173912 cd02156, nt_trans, nucleotidyl transferase superfamily

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPP-----VLSMEERLALVSGL 126
           G    +H GHA  + +AK + D+ VV +  +  +   + P        S+EE +++  G 
Sbjct: 6   GEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVKVWQDPHELEERKESIEEDISVC-GE 64

Query: 127 KWVD 130
            +  
Sbjct: 65  DFQQ 68

nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain. Length = 105

>gnl|CDD|185679 cd02064, FAD_synthetase_N, FAD synthetase, N-terminal domain of the bifunctional enzyme

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 23/147 (15%)

Query: 72  GCFDLMHYGHANALRQAKALGDE--LVVGVVS-----DEEIIANKGPPVL-SMEERLALV 123
           G FD +H GH   ++  K +  E  L   V++      E  + +K PP L ++EE+L L+
Sbjct: 6   GNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELL 65

Query: 124 SGLKWVDEVIA----NAPYAIT-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK 178
             L  VD ++         +++ E+F+  L  +    +++ G D       +    L K+
Sbjct: 66  ESLG-VDYLLVLPFDKEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKE 124

Query: 179 VGRYKQIKRT---------EGVSSTDI 196
           +G+    + T         E VSST I
Sbjct: 125 LGKKYGFEVTVVPPVTLDGERVSSTRI 151

FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation. Length = 180

>gnl|CDD|234912 PRK01170, PRK01170, phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPI 306
           +  + G F   H GH  +LKKA + GD +++G+ +D+ V   +   +PI
Sbjct: 2   ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYV--RKNKVYPI 48

Length = 322

>gnl|CDD|173914 cd02163, PPAT, Phosphopantetheine adenylyltransferase

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 14/92 (15%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131
           G FD +  GH + + +A  L DE++V V  +     +K  P+ S+EER+ L      + E
Sbjct: 6   GSFDPITNGHLDIIERASKLFDEVIVAVAVN----PSK-KPLFSLEERVEL------IRE 54

Query: 132 VIANAPYAITEQFMNRLFN---EHKIDYIIHG 160
              + P    + F   L +   +H  + I+ G
Sbjct: 55  ATKHLPNVEVDGFDGLLVDFARKHGANVIVRG 86

Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli. Length = 153

>gnl|CDD|233444 TIGR01510, coaD_prev_kdtB, pantetheine-phosphate adenylyltransferase, bacterial

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 5/52 (9%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           G FD +  GH + +++A AL DE++V V  +     +K  P+ S+EER+ L+
Sbjct: 6   GSFDPVTNGHLDIIKRAAALFDEVIVAVAKNP----SKK-PLFSLEERVELI 52

This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 155

>gnl|CDD|223950 COG1019, COG1019, Predicted nucleotidyltransferase [General function prediction only]

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHER 312
             V + G FD  H GH ++L+ A ++GD + +G+ +D++  + +     I     R
Sbjct: 6   MKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKK--EKIEPYEVR 59

Length = 158

>gnl|CDD|223741 COG0669, CoaD, Phosphopantetheine adenylyltransferase [Coenzyme metabolism]

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 19/103 (18%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131
           G FD +  GH + +++A AL DE++V V     I  +K  P+ S+EER+ L+       E
Sbjct: 9   GSFDPITNGHLDIIKRASALFDEVIVAVA----INPSKK-PLFSLEERVELIR------E 57

Query: 132 VIANAPYAITEQFMNRLFN---EHKIDYIIHGDDPCLLPDGTD 171
              + P      F   L +   +     ++ G     L   +D
Sbjct: 58  ATKHLPNVEVVGFSGLLVDYAKKLGATVLVRG-----LRAVSD 95

Length = 159

>gnl|CDD|223274 COG0196, RibF, FAD synthase [Coenzyme metabolism]

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 24/147 (16%)

Query: 72  GCFDLMHYGHANALRQAKALGDE--LVVGVVS----DEEIIANKGPPVLSM--EERLALV 123
           G FD +H GH   L QA    ++  L V V++      E++    PP       E++ L+
Sbjct: 22  GNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLL 81

Query: 124 SGLKWVDEVIA---NAPYA-IT-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK 178
           +G   VD ++    +  +A ++ E+F+  L  +  + +I+ G D            L ++
Sbjct: 82  AGYG-VDALVVLDFDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGNAELLRE 140

Query: 179 VGRYKQIKRTE---------GVSSTDI 196
           +G  K  + T           +SST I
Sbjct: 141 LG-QKGFEVTIVPKINEEGIRISSTAI 166

Length = 304

>gnl|CDD|234674 PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional

 Score = 37.8 bits (89), Expect = 0.003
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           G FD +  GH + + +A  L DE++V V  +     +K  P+ S+EER+ L+
Sbjct: 8   GSFDPITNGHLDIIERASRLFDEVIVAVAIN----PSKK-PLFSLEERVELI 54

Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	423
PLN02406	418	ethanolamine-phosphate cytidylyltransferase	100.0
KOG2803	358	consensus Choline phosphate cytidylyltransferase/P	100.0
PTZ00308	353	ethanolamine-phosphate cytidylyltransferase; Provi	100.0
cd02173	152	ECT CTP:phosphoethanolamine cytidylyltransferase (	100.0
PLN02413	294	choline-phosphate cytidylyltransferase	100.0
cd02174	150	CCT CTP:phosphocholine cytidylyltransferase. CTP:p	100.0
COG0615	140	TagD Cytidylyltransferase [Cell envelope biogenesi	99.97
KOG2803	358	consensus Choline phosphate cytidylyltransferase/P	99.97
KOG2804	348	consensus Phosphorylcholine transferase/cholinepho	99.97
cd02174	150	CCT CTP:phosphocholine cytidylyltransferase. CTP:p	99.97
PLN02413	294	choline-phosphate cytidylyltransferase	99.96
COG0615	140	TagD Cytidylyltransferase [Cell envelope biogenesi	99.96
PLN02406	418	ethanolamine-phosphate cytidylyltransferase	99.96
cd02173	152	ECT CTP:phosphoethanolamine cytidylyltransferase (	99.95
KOG2804	348	consensus Phosphorylcholine transferase/cholinepho	99.95
PTZ00308	353	ethanolamine-phosphate cytidylyltransferase; Provi	99.95
cd02172	144	RfaE_N N-terminal domain of RfaE. RfaE is a protei	99.95
cd02170	136	cytidylyltransferase cytidylyltransferase. The cyt	99.94
COG2870	467	RfaE ADP-heptose synthase, bifunctional sugar kina	99.94
TIGR02199	144	rfaE_dom_II rfaE bifunctional protein, domain II.	99.93
TIGR02199	144	rfaE_dom_II rfaE bifunctional protein, domain II.	99.92
TIGR01518	125	g3p_cytidyltrns glycerol-3-phosphate cytidylyltran	99.92
cd02171	129	G3P_Cytidylyltransferase glycerol-3-phosphate cyti	99.92
cd02172	144	RfaE_N N-terminal domain of RfaE. RfaE is a protei	99.91
PRK11316	473	bifunctional heptose 7-phosphate kinase/heptose 1-	99.9
cd02170	136	cytidylyltransferase cytidylyltransferase. The cyt	99.9
TIGR01518	125	g3p_cytidyltrns glycerol-3-phosphate cytidylyltran	99.88
cd02171	129	G3P_Cytidylyltransferase glycerol-3-phosphate cyti	99.88
cd02064	180	FAD_synthetase_N FAD synthetase, N-terminal domain	99.86
PRK07143	279	hypothetical protein; Provisional	99.86
PRK11316	473	bifunctional heptose 7-phosphate kinase/heptose 1-	99.84
PRK05627	305	bifunctional riboflavin kinase/FMN adenylyltransfe	99.84
PF06574	157	FAD_syn: FAD synthetase; InterPro: IPR015864 Ribof	99.81
TIGR00083	288	ribF riboflavin kinase/FMN adenylyltransferase. mu	99.8
COG2870	467	RfaE ADP-heptose synthase, bifunctional sugar kina	99.79
COG0196	304	RibF FAD synthase [Coenzyme metabolism]	99.75
cd02039	143	cytidylyltransferase_like Cytidylyltransferase-lik	99.72
PRK00777	153	phosphopantetheine adenylyltransferase; Provisiona	99.71
PRK00777	153	phosphopantetheine adenylyltransferase; Provisiona	99.68
PRK00168	159	coaD phosphopantetheine adenylyltransferase; Provi	99.63
PRK01170	322	phosphopantetheine adenylyltransferase/unknown dom	99.58
PRK00168	159	coaD phosphopantetheine adenylyltransferase; Provi	99.57
smart00764	182	Citrate_ly_lig Citrate lyase ligase C-terminal dom	99.57
TIGR01527	165	arch_NMN_Atrans nicotinamide-nucleotide adenylyltr	99.56
PF01467	157	CTP_transf_2: Cytidylyltransferase; InterPro: IPR0	99.53
COG0669	159	CoaD Phosphopantetheine adenylyltransferase [Coenz	99.53
cd02169	297	Citrate_lyase_ligase Citrate lyase ligase. Citrate	99.52
cd02163	153	PPAT Phosphopantetheine adenylyltransferase. Phosp	99.51
cd02039	143	cytidylyltransferase_like Cytidylyltransferase-lik	99.49
PLN02388	177	phosphopantetheine adenylyltransferase	99.49
cd02166	163	NMNAT_Archaea Nicotinamide/nicotinate mononucleoti	99.48
cd02163	153	PPAT Phosphopantetheine adenylyltransferase. Phosp	99.48
TIGR01527	165	arch_NMN_Atrans nicotinamide-nucleotide adenylyltr	99.48
TIGR00125	66	cyt_tran_rel cytidyltransferase-related domain. Pr	99.48
COG1057	197	NadD Nicotinic acid mononucleotide adenylyltransfe	99.47
cd02064	180	FAD_synthetase_N FAD synthetase, N-terminal domain	99.45
PRK01170	322	phosphopantetheine adenylyltransferase/unknown dom	99.44
PRK13964	140	coaD phosphopantetheine adenylyltransferase; Provi	99.44
PF01467	157	CTP_transf_2: Cytidylyltransferase; InterPro: IPR0	99.44
TIGR01510	155	coaD_prev_kdtB pantetheine-phosphate adenylyltrans	99.43
TIGR01510	155	coaD_prev_kdtB pantetheine-phosphate adenylyltrans	99.42
TIGR00125	66	cyt_tran_rel cytidyltransferase-related domain. Pr	99.42
PRK00071	203	nadD nicotinic acid mononucleotide adenylyltransfe	99.41
PRK06973	243	nicotinic acid mononucleotide adenylyltransferase;	99.39
cd02165	192	NMNAT Nicotinamide/nicotinate mononucleotide adeny	99.38
cd02164	143	PPAT_CoAS phosphopantetheine adenylyltransferase d	99.36
TIGR00482	193	nicotinate (nicotinamide) nucleotide adenylyltrans	99.33
cd02166	163	NMNAT_Archaea Nicotinamide/nicotinate mononucleoti	99.33
PRK05627	305	bifunctional riboflavin kinase/FMN adenylyltransfe	99.33
PRK08887	174	nicotinic acid mononucleotide adenylyltransferase;	99.31
cd02168	181	NMNAT_Nudix Nicotinamide/nicotinate mononucleotide	99.28
PRK01153	174	nicotinamide-nucleotide adenylyltransferase; Provi	99.26
PRK13964	140	coaD phosphopantetheine adenylyltransferase; Provi	99.24
PRK07152	342	nadD putative nicotinate-nucleotide adenylyltransf	99.24
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.23
COG1019	158	Predicted nucleotidyltransferase [General function	99.22
cd02167	158	NMNAT_NadR Nicotinamide/nicotinate mononucleotide	99.19
cd02164	143	PPAT_CoAS phosphopantetheine adenylyltransferase d	99.17
cd02168	181	NMNAT_Nudix Nicotinamide/nicotinate mononucleotide	99.12
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.1
PRK07143	279	hypothetical protein; Provisional	99.06
cd09286	225	NMNAT_Eukarya Nicotinamide/nicotinate mononucleoti	99.02
cd02167	158	NMNAT_NadR Nicotinamide/nicotinate mononucleotide	99.02
PRK08099	399	bifunctional DNA-binding transcriptional repressor	99.01
PLN02388	177	phosphopantetheine adenylyltransferase	98.99
PRK13670	388	hypothetical protein; Provisional	98.98
PRK01153	174	nicotinamide-nucleotide adenylyltransferase; Provi	98.97
COG0669	159	CoaD Phosphopantetheine adenylyltransferase [Coenz	98.96
PLN02945	236	nicotinamide-nucleotide adenylyltransferase/nicoti	98.96
COG1019	158	Predicted nucleotidyltransferase [General function	98.89
PRK00071	203	nadD nicotinic acid mononucleotide adenylyltransfe	98.87
cd02156	105	nt_trans nucleotidyl transferase superfamily. nt_t	98.85
cd02165	192	NMNAT Nicotinamide/nicotinate mononucleotide adeny	98.83
PRK13793	196	nicotinamide-nucleotide adenylyltransferase; Provi	98.82
PRK08887	174	nicotinic acid mononucleotide adenylyltransferase;	98.82
PRK13671	298	hypothetical protein; Provisional	98.79
cd02156	105	nt_trans nucleotidyl transferase superfamily. nt_t	98.73
TIGR00482	193	nicotinate (nicotinamide) nucleotide adenylyltrans	98.72
cd00560	277	PanC Pantoate-beta-alanine ligase. PanC Pantoate-b	98.69
TIGR00124	332	cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP	98.67
PRK00380	281	panC pantoate--beta-alanine ligase; Reviewed	98.65
PRK08099	399	bifunctional DNA-binding transcriptional repressor	98.64
PRK13793	196	nicotinamide-nucleotide adenylyltransferase; Provi	98.62
PRK07152	342	nadD putative nicotinate-nucleotide adenylyltransf	98.59
PRK13671	298	hypothetical protein; Provisional	98.59
cd02169	297	Citrate_lyase_ligase Citrate lyase ligase. Citrate	98.59
COG1057	197	NadD Nicotinic acid mononucleotide adenylyltransfe	98.57
TIGR00124	332	cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP	98.55
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	98.55
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	98.49
COG1056	172	NadR Nicotinamide mononucleotide adenylyltransfera	98.49
smart00764	182	Citrate_ly_lig Citrate lyase ligase C-terminal dom	98.47
COG1056	172	NadR Nicotinamide mononucleotide adenylyltransfera	98.32
PRK06973	243	nicotinic acid mononucleotide adenylyltransferase;	98.31
KOG3351	293	consensus Predicted nucleotidyltransferase [Genera	98.25
TIGR00083	288	ribF riboflavin kinase/FMN adenylyltransferase. mu	98.25
PF06574	157	FAD_syn: FAD synthetase; InterPro: IPR015864 Ribof	98.18
KOG3351	293	consensus Predicted nucleotidyltransferase [Genera	98.14
cd09286	225	NMNAT_Eukarya Nicotinamide/nicotinate mononucleoti	98.11
COG0196	304	RibF FAD synthase [Coenzyme metabolism]	97.97
PF08218	182	Citrate_ly_lig: Citrate lyase ligase C-terminal do	97.93
TIGR00018	282	panC pantoate--beta-alanine ligase. This family is	97.82
PRK13670	388	hypothetical protein; Provisional	97.75
PLN02660	284	pantoate--beta-alanine ligase	97.74
PF05636	388	HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPr	97.55
COG1323	358	Predicted nucleotidyltransferase [General function	97.36
COG3053	352	CitC Citrate lyase synthetase [Energy production a	97.34
PLN02945	236	nicotinamide-nucleotide adenylyltransferase/nicoti	97.32
COG1323	358	Predicted nucleotidyltransferase [General function	97.18
TIGR00339	383	sopT ATP sulphurylase. Members of this family also	97.03
PF05636	388	HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPr	96.95
PF08218	182	Citrate_ly_lig: Citrate lyase ligase C-terminal do	96.81
TIGR00018	282	panC pantoate--beta-alanine ligase. This family is	96.38
COG3053	352	CitC Citrate lyase synthetase [Energy production a	96.29
PLN02660	284	pantoate--beta-alanine ligase	95.94
PRK00380	281	panC pantoate--beta-alanine ligase; Reviewed	95.83
cd00560	277	PanC Pantoate-beta-alanine ligase. PanC Pantoate-b	95.11
PF02569	280	Pantoate_ligase: Pantoate-beta-alanine ligase; Int	94.63
PRK04149	391	sat sulfate adenylyltransferase; Reviewed	94.34
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	93.96
COG0414	285	PanC Panthothenate synthetase [Coenzyme metabolism	93.58
PF01747	215	ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002	93.28
COG2046	397	MET3 ATP sulfurylase (sulfate adenylyltransferase)	92.93
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	92.73
cd00517	353	ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also	92.71
PF02569	280	Pantoate_ligase: Pantoate-beta-alanine ligase; Int	92.7
KOG3199	234	consensus Nicotinamide mononucleotide adenylyl tra	92.3
COG0414	285	PanC Panthothenate synthetase [Coenzyme metabolism	91.91
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	90.44
KOG3042	283	consensus Panthothenate synthetase [Coenzyme trans	88.37

>PLN02406 ethanolamine-phosphate cytidylyltransferase

Probab=100.00  E-value=8.6e-94  Score=726.88  Aligned_cols=410  Identities=72%  Similarity=1.112  Sum_probs=370.6

Q ss_pred             cccccccccccccchhHHHHHHHhhhhcccCCcccccCchhhhHHHhhhhcCCCCCeEEEEecccCcCcHHHHHHHHHHH
Q 014487           10 WIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAK   89 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~   89 (423)
                      +.|.+.++++|++||+|+++|+||+++.+++    ..+|++|++.-..++.++.++.|||++||||++|.||+++|+||+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~rV~~~G~FDllH~GH~~~L~qAk   77 (418)
T PLN02406          2 SISSAKYVASCLIGGLMLGASVLGLSLAGFG----SSLPYAWPDLGIFKKKKKKKPVRVYMDGCFDMMHYGHANALRQAR   77 (418)
T ss_pred             CccccceeeehhhHHHHHHHHHHHHHhcccc----ccccccchhhhhhccccCCCceEEEEcCeeCCCCHHHHHHHHHHH
Confidence            3456788899999999999999999998876    235667775112244555677899999999999999999999999


Q ss_pred             HhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEecCCccccHHHHHHHHhhcCccEEEEcCCCCCCCCC
Q 014487           90 ALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDG  169 (423)
Q Consensus        90 ~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~~efl~~ll~~~~~d~VV~G~D~~~g~~g  169 (423)
                      ++|++|+|||++|+.+..+|++|+++++||++++++|+|||+|++++||.++.+|+++++++++||++|||+||+...+|
T Consensus        78 ~lGd~LIVGV~SDe~i~~~Kg~PV~~~eER~~~v~alk~VD~Vv~~apy~~~~d~~~~li~~~~~D~vVhGdD~~~~~~g  157 (418)
T PLN02406         78 ALGDELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKWVDEVIPDAPYAITEEFMNKLFNEYNIDYIIHGDDPCLLPDG  157 (418)
T ss_pred             HhCCEEEEEEecChhhhccCCCCcCCHHHHHHHHHhcCCCceEEeCCccccchHHHHHHHHHhCCCEEEECCCccccCCc
Confidence            99999999999999998889999999999999999999999999999999999999989999999999999999988899


Q ss_pred             CcHHHHHHhCCcEEEeccCCCCCHHHHHHHHHhccccccccccccCCCCCCCchh-------hhcccccccccccccccc
Q 014487          170 TDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLR-------AIQSKDAHLSQFLPTSRR  242 (423)
Q Consensus       170 ~~~~~~lk~~g~~~~v~r~~~iSST~Ir~rI~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  242 (423)
                      .+.|...+..|++++++|++|+|||+|++||+.++++|+....+.....+++|+.       .+.+..+.+++|++|+++
T Consensus       158 ~d~y~~~k~~Gr~~~i~rt~GvSTTdIv~Ril~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  237 (418)
T PLN02406        158 TDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHSQFEDGGSGSGTRVSHFLPTSRR  237 (418)
T ss_pred             hHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHhhhccccccccchhhhhhhhccccccccccCCCCCCCcccccccHHH
Confidence            9999999999999999999999999999999999999875433322233333331       123345677999999999


Q ss_pred             hhccccCCCCCCCCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhccc
Q 014487          243 IVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYV  322 (423)
Q Consensus       243 i~~~~~~~~~~~~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~V  322 (423)
                      |.||++|+.|.|++++||++|+||+||.||+++|++|+++||+|||||++|++++++||+++|+|+++||+++|++|+||
T Consensus       238 i~qf~~g~~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lGd~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack~V  317 (418)
T PLN02406        238 IVQFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACRYV  317 (418)
T ss_pred             HHHHhccCCCCCCCeEEEECCeeccCCHHHHHHHHHHHHhCCEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             CeeEEcCCCCchHHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhchHhHHHH
Q 014487          323 DEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKR  402 (423)
Q Consensus       323 d~Vvi~~p~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI~~~~~~y~~r  402 (423)
                      |+||+++|+.++.++|++++||++|||++|+...+...+.|+|.+++.+|++..+++++++|||+||+||++||++|++|
T Consensus       318 D~VVi~ap~~~~~~~i~~~~~d~vvhG~~~~~~~~~~~~~D~Y~v~k~~G~~~~i~~~~~iSTt~II~RI~~~~~~y~~R  397 (418)
T PLN02406        318 DEVIIGAPWEVSKDMITTFNISLVVHGTVAENNDFLKGEDDPYAVPKSMGIFQVLESPLDITTSTIIRRIVANHEAYQKR  397 (418)
T ss_pred             cEEEeCCCCCCCHHHHHHhCCCEEEECCcCCCccccCCCCcchHHHhcCceEEEeCCCCCCcHHHHHHHHHHhHHHHHHH
Confidence            99999999999999999999999999998865555556689999999999999999999999999999999999999999


Q ss_pred             HhhhhHhHHHHHHhcccccCC
Q 014487          403 NAKKAVSEKKYYEQKMFVSGD  423 (423)
Q Consensus       403 ~~~k~~~e~~~~~~~~~~~~~  423 (423)
                      |++|+++|..+|++|.||+||
T Consensus       398 n~~K~~ke~~~~~~~~~~~~~  418 (418)
T PLN02406        398 NEKKAESEKRYYESKSFVSGD  418 (418)
T ss_pred             HHHHHHHHHHHHhhccCCCCC
Confidence            999999999999999999997

>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]

Probab=100.00  E-value=2.3e-90  Score=662.53  Aligned_cols=348  Identities=52%  Similarity=0.859  Sum_probs=321.7

Q ss_pred             CCCeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEecCCccccH
Q 014487           63 KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITE  142 (423)
Q Consensus        63 ~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~~  142 (423)
                      .++.|||++||||++|+||.++|+||+++|++|+||||+|++|..+||+|+||.+||++|+++|||||+||+++||.++.
T Consensus         6 ~~~~rVw~DGCfDm~HyGHanaLrQAkalGdkLivGVHsDeeI~~nKGpPV~t~eERy~~v~~ikWVDEVV~~APyvtt~   85 (358)
T KOG2803|consen    6 NRPVRVWADGCFDMVHYGHANALRQAKALGDKLIVGVHSDEEITLNKGPPVFTDEERYEMVKAIKWVDEVVEGAPYVTTL   85 (358)
T ss_pred             CCceeEEeccchhhhhhhhhHHHHHHHHhCCeEEEEecchHHHHhcCCCCcccHHHHHHHHhhcchhhhhhcCCCeeccH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCCcEEEeccCCCCCHHHHHHHHHhccccccccccccCCCCCCCc
Q 014487          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDP  222 (423)
Q Consensus       143 efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~iSST~Ir~rI~~~~~~~~~~~~~~~~~~~~~~  222 (423)
                      ++++    +|+||+||||+|.+..++|.|+|.+.|++|++++++||.|+|||+|++||+..++.++ ++....+.++..+
T Consensus        86 ~~md----~y~cd~vvHGdDit~~a~G~D~Y~~vK~agrykevKRT~GVSTTelvgRmll~~~~~~-~~~~~~~~~e~~~  160 (358)
T KOG2803|consen   86 EWMD----KYGCDYVVHGDDITLDADGLDCYRLVKAAGRYKEVKRTEGVSTTELVGRMLLKKRNHH-SDEVSSSQRELSF  160 (358)
T ss_pred             HHHH----HhCCeEEEeCCcceecCCCccHHHHHHHhcchheeeeccCcchhhhhhHhhhhccCCC-ccccchhhhhhhh
Confidence            9984    7999999999999999999999999999999999999999999999999999999888 3322222222333


Q ss_pred             h----hhhcccccccccccccccchhccccCCCCCCCCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhh
Q 014487          223 L----RAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSE  298 (423)
Q Consensus       223 ~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~  298 (423)
                      +    +...++|+++++|+|++++|+||++|+.|.|+.++||++|.|||||.||+++|++|+.+||+|||||++|+.+++
T Consensus       161 ~~g~~~~~~sp~t~~s~F~~tt~~i~~~~~G~~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lgdyLIvGI~~D~~vne  240 (358)
T KOG2803|consen  161 SSGTDDDGLSPWTRVSVFLPTTQKIIQFSNGREPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLGDYLIVGIHTDQTVNE  240 (358)
T ss_pred             ccccCCcccCCccceeeeeecCccceEeecCCCCCCCCcEEEEcCchhhhccchHHHHHHHHhccCceEEEeecCcchhh
Confidence            2    344678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCchHHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeC
Q 014487          299 HRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLE  378 (423)
Q Consensus       299 ~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~  378 (423)
                      +||.|+||||++||.++|++|||||+|++++|+..+.++|+++++|.|++|.....    ....+||..++..|++..++
T Consensus       241 ykgs~~PiMnl~ER~LsvlackyVdeVvvGaP~~v~s~~i~~~~~~~v~~g~~~~~----~~~~~py~~~k~~~i~~~~~  316 (358)
T KOG2803|consen  241 YKGSNYPIMNLHERVLSVLACKYVDEVVVGAPYEVTSEFIKLFNIDKVAHGTIPDF----RDPSDPYADPKRRGIFEEAD  316 (358)
T ss_pred             hccCCCccchHHHHHHHHhhhcccceEEEcCchhccHHHHHhcCceEEEEeccccc----cCccCccccchhhcchhhcC
Confidence            99999999999999999999999999999999999999999999999999982211    23456999999999999999


Q ss_pred             CCCCCCHHHHHHHHHhchHhHHHHHhhhhHhHHHHHHhccc
Q 014487          379 SPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMF  419 (423)
Q Consensus       379 ~~~~~Stt~Ii~RI~~~~~~y~~r~~~k~~~e~~~~~~~~~  419 (423)
                      +..++||+.|++||+.||++|++||+||+.+|..+++++..
T Consensus       317 ~~~dltte~Iv~RIis~r~~Ye~Rn~kk~~k~~~~~~~~~~  357 (358)
T KOG2803|consen  317 SGSDLTTELIVERIISNRQAYEARNQKKEGKEAPLNEAQHR  357 (358)
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHhHHhhhcccchhhhhcc
Confidence            99999999999999999999999999999999999988653

>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional

Probab=100.00  E-value=1.4e-79  Score=617.61  Aligned_cols=346  Identities=49%  Similarity=0.820  Sum_probs=315.0

Q ss_pred             CCCCCeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEecCCccc
Q 014487           61 GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAI  140 (423)
Q Consensus        61 ~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~  140 (423)
                      +..++++||++||||++|.||+++|+||+++|+.|+||+++|+.+.+.|++|+++++||++++++|+|||+|+++.||+.
T Consensus         7 ~~~~~~~v~~~G~FD~vH~GH~~~L~qAk~~g~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~~~VD~Vv~~~p~~~   86 (353)
T PTZ00308          7 KKPGTIRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGPPVMHQEERYEALRACKWVDEVVEGYPYTT   86 (353)
T ss_pred             CCCCcEEEEEEeecccCCHHHHHHHHHHHHhCCEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhcCCccEEEECCCCCc
Confidence            34557899999999999999999999999999999999999999988888899999999999999999999999889987


Q ss_pred             cHHHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCCcEEEeccCCCCCHHHHHHHHHhccccccccccccCCCCCC
Q 014487          141 TEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPR  220 (423)
Q Consensus       141 ~~efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~iSST~Ir~rI~~~~~~~~~~~~~~~~~~~~  220 (423)
                      +.+|+    ++++||+||||+||++|.+|.++|+.++..|+++.++|++|+|||+|++||+.++++++.... ....+  
T Consensus        87 ~~~fI----~~l~~d~vv~GdD~~~g~~g~~~~~~lk~~G~~~~v~rt~g~STt~ii~ril~~~~~~~~~~~-~~~~~--  159 (353)
T PTZ00308         87 RLEDL----ERLECDFVVHGDDISVDLNGRNSYQEIIDAGKFKVVKRTEGISTTDLVGRMLLCTKSHLLKSV-DEVQL--  159 (353)
T ss_pred             hHHHH----HHhCCCEEEECCCCCCCCCccchHHHHHhCCeEEEEecCCCCCHHHHHHHHHHhhhccccccc-ccccc--
Confidence            77776    578999999999999999999999999999999999999999999999999999998764221 11111  


Q ss_pred             CchhhhcccccccccccccccchhccccCCCCCCCCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhcc
Q 014487          221 DPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHR  300 (423)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~K  300 (423)
                        . .....++.+++|++++++|.+|+.+..|.+++++||++|+|||||.||+++|++|+++||+|||||++|++++++|
T Consensus       160 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lgd~LIVgV~sD~~v~~~K  236 (353)
T PTZ00308        160 --E-SSLFPYTPTSHCLTTSRKIVQFSNNRSPKPGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQK  236 (353)
T ss_pred             --c-cccccCCCcceeecchhheeeccccCCCCCCCeEEEECCccCCCCHHHHHHHHHHHHhCCEEEEEEcchHHhHhhc
Confidence              1 1223556678899999999999999888888999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCchHHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCC
Q 014487          301 GSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESP  380 (423)
Q Consensus       301 g~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~  380 (423)
                      |+++|+|+++||++++++|+|||+|++++|+.++.+++++++||++|||.||...+ .+++.|+|.+++.+|++..++++
T Consensus       237 g~~~Pi~~~~eR~~~v~a~~~Vd~Vvi~~~~~~~~~~i~~~~~d~vv~G~d~~~~~-~~~~~d~y~~~k~~G~~~~i~~~  315 (353)
T PTZ00308        237 GSNYPIMNLNERVLGVLSCRYVDEVVIGAPFDVTKEVIDSLHINVVVGGKFSDLVN-EEGGSDPYEVPKAMGIFKEVDSG  315 (353)
T ss_pred             CCCCCCCCHHHHHHHHHhhCCCCeEEEcCCCCChHHHHHHhCCCEEEECCCCcccc-CCCcccchHHHhcCceEEEeCCC
Confidence            98899999999999999999999999999999999999999999999999986422 24568899999999999999999


Q ss_pred             CCCCHHHHHHHHHhchHhHHHHHhhhhHhHHHHHHhc
Q 014487          381 KSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQK  417 (423)
Q Consensus       381 ~~~Stt~Ii~RI~~~~~~y~~r~~~k~~~e~~~~~~~  417 (423)
                      +++|||+||+||++||++|++||++|.++|..+|+.+
T Consensus       316 ~~~sTt~ii~RI~~~r~~~~~r~~~k~~~e~~~~~~~  352 (353)
T PTZ00308        316 CDLTTDSIVDRVVKNRLAFLKRQAKKRAKEIKSQEIK  352 (353)
T ss_pred             CCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999865

>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT)

Probab=100.00  E-value=1.1e-38  Score=286.72  Aligned_cols=152  Identities=57%  Similarity=0.937  Sum_probs=141.3

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCch
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVT  334 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~  334 (423)
                      ++++||++|+||+||.||+++|++|+++||+|||||++|+++++.||+++|+|+++||++++++|++||+|++++|+.++
T Consensus         1 ~~~iv~~~G~FD~~H~GHi~~L~~A~~lgd~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~~   80 (152)
T cd02173           1 GDKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVIT   80 (152)
T ss_pred             CCeEEEEcCcccCCCHHHHHHHHHHHHcCCEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcch
Confidence            36899999999999999999999999999999999999999999999778999999999999999999999999998888


Q ss_pred             HHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhchHhHHHHHhhhh
Q 014487          335 KDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKA  407 (423)
Q Consensus       335 ~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI~~~~~~y~~r~~~k~  407 (423)
                      .+++++++||++++|.+|...+. ..+.++|.+++.+|++.++++++++|||+|++||+++|+.|++||++|.
T Consensus        81 ~~~~~~~~~d~vv~G~d~~~~~~-~~~~~~~~~~~~~G~~~~v~~~~~~Sts~Ii~rI~~~~~~y~~r~~~k~  152 (152)
T cd02173          81 KELIEHFKIDVVVHGKTEETPDS-LDGEDPYAVPKEMGIFKEIDSGSDLTTRDIVNRIIKNRLAYEARNKKKE  152 (152)
T ss_pred             HHHHHHhCCCEEEECCCCccccc-cCchHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHhHHHHHHHHhccC
Confidence            99999999999999999865321 2356789999999999999999999999999999999999999999984

CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.

>PLN02413 choline-phosphate cytidylyltransferase

Probab=100.00  E-value=5.3e-37  Score=294.99  Aligned_cols=154  Identities=32%  Similarity=0.596  Sum_probs=140.0

Q ss_pred             CCCCCeEEEEcCeeccCCHHHHHHHHHHHhcC--CEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcC
Q 014487          252 PGPNARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGA  329 (423)
Q Consensus       252 ~~~~~~iv~~~G~FDl~H~GHi~~L~~A~~~g--d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~  329 (423)
                      +.....+||++|+||+||.||+++|++|+++|  |+|||||++|++++++||  +|+|+++||+++|++|+|||+||+++
T Consensus        23 ~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KG--rPIm~~~ER~e~V~acKyVDeVV~~a  100 (294)
T PLN02413         23 PSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKG--KTVMTEDERYESLRHCKWVDEVIPDA  100 (294)
T ss_pred             CCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCC--CCCCCHHHHHHHHHhcccccEEeeCC
Confidence            34456789999999999999999999999996  799999999999999999  49999999999999999999999999


Q ss_pred             CCCchHHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhchHhHHHHHhhhhH
Q 014487          330 PWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAV  408 (423)
Q Consensus       330 p~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI~~~~~~y~~r~~~k~~  408 (423)
                      ||.++.++|++++||++|||++...+ ....+.|+|..++.+|++.++++++++|||+||+||+++++.|++||.+|..
T Consensus       101 P~~~t~efI~~~kpDiVvhGd~~~~d-~~~~g~D~Y~~vK~~G~f~~i~Rt~gvSTTdII~RIlk~y~~Y~~Rn~~rg~  178 (294)
T PLN02413        101 PWVITQEFLDKHRIDYVAHDALPYAD-ASGAGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLARGY  178 (294)
T ss_pred             CccccHHHHHHhCCCEEEECCCCCcc-ccccCchhHHHHHHCCeEEEecCCCCcCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999753322 1124578999999999999999999999999999999999999999999854

>cd02174 CCT CTP:phosphocholine cytidylyltransferase

Probab=100.00  E-value=2.9e-36  Score=270.28  Aligned_cols=145  Identities=35%  Similarity=0.684  Sum_probs=136.4

Q ss_pred             eEEEEcCeeccCCHHHHHHHHHHHhcC--CEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCch
Q 014487          257 RVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVT  334 (423)
Q Consensus       257 ~iv~~~G~FDl~H~GHi~~L~~A~~~g--d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~  334 (423)
                      +.||++|+||+||.||+++|++|+++|  |+|||||++|++++++||+  |+|+++||++++++|+|||+|++++|+..+
T Consensus         3 ~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~--pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~   80 (150)
T cd02174           3 VRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGP--PVMTEEERYEAVRHCKWVDEVVEGAPYVTT   80 (150)
T ss_pred             eEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCC--CcCCHHHHHHHHHhcCCCCeEEECCCCCCh
Confidence            579999999999999999999999999  9999999999999999985  999999999999999999999999998888


Q ss_pred             HHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhchHhHHHHHhhh
Q 014487          335 KDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKK  406 (423)
Q Consensus       335 ~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI~~~~~~y~~r~~~k  406 (423)
                      .+++++++||++++|+||..+   ..+.++|..++.+|++.++++++++|||.|++||+.+++.|++||...
T Consensus        81 ~~~i~~~~~d~vv~G~d~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~Stt~ii~rI~~~~~~~~~r~~~~  149 (150)
T cd02174          81 PEFLDKYKCDYVAHGDDIYLD---ADGEDCYQEVKDAGRFKEVKRTEGVSTTDLIGRILLDYRDYHRRNLQR  149 (150)
T ss_pred             HHHHHHhCCCEEEECCCCCCC---CCchhHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhHHHHHHhhhcc
Confidence            999999999999999999764   234678889999999999999999999999999999999999999864

CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.

>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]

Probab=99.97  E-value=4.2e-31  Score=231.06  Aligned_cols=132  Identities=35%  Similarity=0.654  Sum_probs=118.6

Q ss_pred             eEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCchHH
Q 014487          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKD  336 (423)
Q Consensus       257 ~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~~~  336 (423)
                      +.|+++||||+||+||+++|++||++||+|+|.+..|+.+...|++ .|+|+.+||++++.+|+|||+|++++||+.+.+
T Consensus         2 ~rV~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~-~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~~~   80 (140)
T COG0615           2 KRVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKR-KPIMPEEQRAEVLESLRYVDEVILGAPWDIKFE   80 (140)
T ss_pred             cEEEEeeEEEEechhHHHHHHHHHHhCCeEEEEEeccHHHHHhcCC-CCCCCHHHHHHHHHcCcchheeeeCCccccChH
Confidence            3499999999999999999999999999999999999998875554 699999999999999999999999999999889


Q ss_pred             HHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCC------CCHHHHHHHHHh
Q 014487          337 MITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKS------ITTTSVAQRIIA  394 (423)
Q Consensus       337 ~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~------~Stt~Ii~RI~~  394 (423)
                      ++++++||++++|+||...    .+.+.++..+ +|.+.++.|+++      .||+.|++||..
T Consensus        81 ~i~~~k~Div~lG~D~~~d----~~~l~~~~~k-~G~~~~v~R~~g~~~~~~~st~~i~~~i~~  139 (140)
T COG0615          81 DIEEYKPDIVVLGDDQKFD----EDDLKYELVK-RGLFVEVKRTEGVSTCELISTSDIIKRILE  139 (140)
T ss_pred             HHHHhCCCEEEECCCCcCC----hHHHHHHHHH-cCCeeEEEeccCcccCcccchHHHHHHHhc
Confidence            9999999999999998742    4556777777 999999999988      788899988864

>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]

Probab=99.97  E-value=1.6e-31  Score=257.19  Aligned_cols=134  Identities=31%  Similarity=0.558  Sum_probs=127.2

Q ss_pred             EEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCchHHH
Q 014487          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDM  337 (423)
Q Consensus       258 iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~~~~  337 (423)
                      .||++||||++|.||.+.|+|||++||+|||||++|+.+..+||+  |+|+++||++++.+|||||+||.++|+..+.++
T Consensus        10 rVw~DGCfDm~HyGHanaLrQAkalGdkLivGVHsDeeI~~nKGp--PV~t~eERy~~v~~ikWVDEVV~~APyvtt~~~   87 (358)
T KOG2803|consen   10 RVWADGCFDMVHYGHANALRQAKALGDKLIVGVHSDEEITLNKGP--PVFTDEERYEMVKAIKWVDEVVEGAPYVTTLEW   87 (358)
T ss_pred             eEEeccchhhhhhhhhHHHHHHHHhCCeEEEEecchHHHHhcCCC--CcccHHHHHHHHhhcchhhhhhcCCCeeccHHH
Confidence            599999999999999999999999999999999999999999997  999999999999999999999999999999999


Q ss_pred             HhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhch
Q 014487          338 ITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANH  396 (423)
Q Consensus       338 i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI~~~~  396 (423)
                      ++++++|++|||+|...   ++.+.|.|...|.+|++.+++||.++|||+|+.|++.-.
T Consensus        88 md~y~cd~vvHGdDit~---~a~G~D~Y~~vK~agrykevKRT~GVSTTelvgRmll~~  143 (358)
T KOG2803|consen   88 MDKYGCDYVVHGDDITL---DADGLDCYRLVKAAGRYKEVKRTEGVSTTELVGRMLLKK  143 (358)
T ss_pred             HHHhCCeEEEeCCccee---cCCCccHHHHHHHhcchheeeeccCcchhhhhhHhhhhc
Confidence            99999999999998644   367899999999999999999999999999999986543

>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]

Probab=99.97  E-value=2.3e-31  Score=254.77  Aligned_cols=146  Identities=33%  Similarity=0.664  Sum_probs=137.4

Q ss_pred             eEEEEcCeeccCCHHHHHHHHHHHhcC--CEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCch
Q 014487          257 RVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVT  334 (423)
Q Consensus       257 ~iv~~~G~FDl~H~GHi~~L~~A~~~g--d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~  334 (423)
                      -.||.+|.|||||.||.+.|+|||+++  -+|||||.+|+...++||  +.+|+.+||++.|..|||||+||.++||.++
T Consensus        64 VRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG--~TVm~e~ERyE~lrHCryVDEVi~~APW~lt  141 (348)
T KOG2804|consen   64 VRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKG--RTVMNENERYEALRHCRYVDEVIPNAPWTLT  141 (348)
T ss_pred             eEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccC--ceecChHHHHHHhhhhhhhhhhccCCCcccc
Confidence            469999999999999999999999988  699999999999999999  5999999999999999999999999999999


Q ss_pred             HHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhchHhHHHHHhhhh
Q 014487          335 KDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKA  407 (423)
Q Consensus       335 ~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI~~~~~~y~~r~~~k~  407 (423)
                      .+||++++||+|.|.+.....   .+.+|.|+..|.+|.|....||.++||++||-||+..++.|..||..+.
T Consensus       142 ~EFL~~HKIDfVAHDdIPY~s---~gsdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVrDYD~YvrRNL~RG  211 (348)
T KOG2804|consen  142 PEFLEKHKIDFVAHDDIPYVS---AGSDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVRDYDVYVRRNLARG  211 (348)
T ss_pred             HHHHHhcccceeeccCccccC---CCchhHHHHHHHhcccccccccCCccHHHHHHHHHHhHHHHHHhhhccc
Confidence            999999999999999876553   4567999999999999999999999999999999999999999997763

>cd02174 CCT CTP:phosphocholine cytidylyltransferase

Probab=99.97  E-value=2.3e-30  Score=232.21  Aligned_cols=138  Identities=61%  Similarity=1.009  Sum_probs=127.9

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhc--CeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEecCCccccH
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITE  142 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~~  142 (423)
                      ++|||+.|+||++|.||+++|++|+++|  +.|+|||++|+.+..+|++|+++++||.+++++|+|||+|+++.|+..+.
T Consensus         2 ~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~~   81 (150)
T cd02174           2 PVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHCKWVDEVVEGAPYVTTP   81 (150)
T ss_pred             CeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCCCcCCHHHHHHHHHhcCCCCeEEECCCCCChH
Confidence            5789999999999999999999999999  99999999999988788889999999999999999999999999988888


Q ss_pred             HHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCCcEEEeccCCCCCHHHHHHHHHhcccc
Q 014487          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMED  206 (423)
Q Consensus       143 efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~iSST~Ir~rI~~~~~~  206 (423)
                      +|++    +++||++++|+||..+..+.+.|+.+++.|+++.+++++++|||.|++||++....
T Consensus        82 ~~i~----~~~~d~vv~G~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Stt~ii~rI~~~~~~  141 (150)
T cd02174          82 EFLD----KYKCDYVAHGDDIYLDADGEDCYQEVKDAGRFKEVKRTEGVSTTDLIGRILLDYRD  141 (150)
T ss_pred             HHHH----HhCCCEEEECCCCCCCCCchhHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhHHH
Confidence            8874    68999999999998877777889999999999999999999999999999976543

CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.

>PLN02413 choline-phosphate cytidylyltransferase

Probab=99.96  E-value=2.1e-29  Score=242.63  Aligned_cols=141  Identities=43%  Similarity=0.767  Sum_probs=127.3

Q ss_pred             CCCCCeEEEEecccCcCcHHHHHHHHHHHHhc--CeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEecCCc
Q 014487           61 GKKKRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPY  138 (423)
Q Consensus        61 ~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~  138 (423)
                      ...++++||++||||++|.||+++|++|+++|  +.|+|||++|+.+...|++|+|+++||+++|++|+|||+|++++||
T Consensus        23 ~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGrPIm~~~ER~e~V~acKyVDeVV~~aP~  102 (294)
T PLN02413         23 PSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESLRHCKWVDEVIPDAPW  102 (294)
T ss_pred             CCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCCCCCCHHHHHHHHHhcccccEEeeCCCc
Confidence            44668899999999999999999999999996  7999999999999889999999999999999999999999999999


Q ss_pred             cccHHHHHHHHhhcCccEEEEcCCCCCC--CCCCcHHHHHHhCCcEEEeccCCCCCHHHHHHHHHhccc
Q 014487          139 AITEQFMNRLFNEHKIDYIIHGDDPCLL--PDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSME  205 (423)
Q Consensus       139 ~~~~efl~~ll~~~~~d~VV~G~D~~~g--~~g~~~~~~lk~~g~~~~v~r~~~iSST~Ir~rI~~~~~  205 (423)
                      ..+.+|++    +++||+||||++....  ..+.+.|..+++.|++..+++++++|||+|++||+....
T Consensus       103 ~~t~efI~----~~kpDiVvhGd~~~~d~~~~g~D~Y~~vK~~G~f~~i~Rt~gvSTTdII~RIlk~y~  167 (294)
T PLN02413        103 VITQEFLD----KHRIDYVAHDALPYADASGAGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVKDYN  167 (294)
T ss_pred             cccHHHHH----HhCCCEEEECCCCCccccccCchhHHHHHHCCeEEEecCCCCcCHHHHHHHHHHHHH
Confidence            99999985    6799999999854332  245678999999999999999999999999999997643

>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]

Probab=99.96  E-value=1.4e-29  Score=221.59  Aligned_cols=131  Identities=44%  Similarity=0.724  Sum_probs=116.8

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhc-cCCCCCCcHHHHHHHHhcCccccEEEecCCccccHHH
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIA-NKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~-~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~~ef  144 (423)
                      ++||++||||.+|+||+++|+||+++|++++|.+.+|+.+.. .|++|+++++||++++++|+|||+|++++||+++.++
T Consensus         2 ~rV~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~~~~   81 (140)
T COG0615           2 KRVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVDEVILGAPWDIKFED   81 (140)
T ss_pred             cEEEEeeEEEEechhHHHHHHHHHHhCCeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcCcchheeeeCCccccChHH
Confidence            579999999999999999999999999999999999998765 6669999999999999999999999999999998888


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCCcEEEeccCCC------CCHHHHHHHHHh
Q 014487          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEG------VSSTDIVGRILS  202 (423)
Q Consensus       145 l~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~------iSST~Ir~rI~~  202 (423)
                      ++    +++||+|++|+||+ +..+...+.+.+ .|.+.+++|+++      +||++|.+++..
T Consensus        82 i~----~~k~Div~lG~D~~-~d~~~l~~~~~k-~G~~~~v~R~~g~~~~~~~st~~i~~~i~~  139 (140)
T COG0615          82 IE----EYKPDIVVLGDDQK-FDEDDLKYELVK-RGLFVEVKRTEGVSTCELISTSDIIKRILE  139 (140)
T ss_pred             HH----HhCCCEEEECCCCc-CChHHHHHHHHH-cCCeeEEEeccCcccCcccchHHHHHHHhc
Confidence            74    78999999999999 545555565555 999999999987      899999998863

>PLN02406 ethanolamine-phosphate cytidylyltransferase

Probab=99.96  E-value=2.2e-29  Score=256.54  Aligned_cols=135  Identities=33%  Similarity=0.667  Sum_probs=124.3

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCch
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVT  334 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~  334 (423)
                      ....||++||||++|.||+++|++|+++||+|||||++|+++.++||+  |+|+++||++++++|+|||+|++++|+.++
T Consensus        52 ~~~rV~~~G~FDllH~GH~~~L~qAk~lGd~LIVGV~SDe~i~~~Kg~--PV~~~eER~~~v~alk~VD~Vv~~apy~~~  129 (418)
T PLN02406         52 KPVRVYMDGCFDMMHYGHANALRQARALGDELVVGVVSDEEIIANKGP--PVTPMHERMIMVSGVKWVDEVIPDAPYAIT  129 (418)
T ss_pred             CceEEEEcCeeCCCCHHHHHHHHHHHHhCCEEEEEEecChhhhccCCC--CcCCHHHHHHHHHhcCCCceEEeCCccccc
Confidence            457799999999999999999999999999999999999999999984  999999999999999999999999998877


Q ss_pred             HHHH----hhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHh
Q 014487          335 KDMI----TTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIA  394 (423)
Q Consensus       335 ~~~i----~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI~~  394 (423)
                      .+++    ++++||++|||+||...   +.+.|.|.+.+.+|++.++++++++|||+|+.||+.
T Consensus       130 ~d~~~~li~~~~~D~vVhGdD~~~~---~~g~d~y~~~k~~Gr~~~i~rt~GvSTTdIv~Ril~  190 (418)
T PLN02406        130 EEFMNKLFNEYNIDYIIHGDDPCLL---PDGTDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLL  190 (418)
T ss_pred             hHHHHHHHHHhCCCEEEECCCcccc---CCchHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHH
Confidence            7766    58999999999998642   456788999999999999999999999999999975

>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT)

Probab=99.95  E-value=8.8e-28  Score=215.97  Aligned_cols=135  Identities=40%  Similarity=0.723  Sum_probs=122.8

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCC--CCCCcHHHHHHHHhcCccccEEEecCCccccH
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAITE  142 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~~  142 (423)
                      .++||+.|+||++|.||+++|++|+++|+.|+|||++|+.+...|+  +|+++++||++++++|+|||.|++..|+.++.
T Consensus         2 ~~iv~~~G~FD~~H~GHi~~L~~A~~lgd~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~~~   81 (152)
T cd02173           2 DKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVITK   81 (152)
T ss_pred             CeEEEEcCcccCCCHHHHHHHHHHHHcCCEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcchH
Confidence            4689999999999999999999999999999999999999887776  69999999999999999999999988887777


Q ss_pred             HHHHHHHhhcCccEEEEcCCCCCC--CCCCcHHHHHHhCCcEEEeccCCCCCHHHHHHHHHhc
Q 014487          143 QFMNRLFNEHKIDYIIHGDDPCLL--PDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (423)
Q Consensus       143 efl~~ll~~~~~d~VV~G~D~~~g--~~g~~~~~~lk~~g~~~~v~r~~~iSST~Ir~rI~~~  203 (423)
                      +|+    ++++||++++|.||...  ..+.+.|..++..|.+..+++++++|||+|++||++.
T Consensus        82 ~~~----~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~G~~~~v~~~~~~Sts~Ii~rI~~~  140 (152)
T cd02173          82 ELI----EHFKIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFKEIDSGSDLTTRDIVNRIIKN  140 (152)
T ss_pred             HHH----HHhCCCEEEECCCCccccccCchHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHh
Confidence            776    47899999999999754  2456779999999999999999999999999999854

CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.

>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]

Probab=99.95  E-value=2e-28  Score=234.58  Aligned_cols=140  Identities=44%  Similarity=0.712  Sum_probs=130.1

Q ss_pred             CCCCeEEEEecccCcCcHHHHHHHHHHHHhc--CeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEecCCcc
Q 014487           62 KKKRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYA  139 (423)
Q Consensus        62 ~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~  139 (423)
                      ..++.|||++|.||++|+||++.|+||+++.  -+|+|||.+|+...+.||..+|+..||++.|++|+|||+|+.++||.
T Consensus        60 ~~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCryVDEVi~~APW~  139 (348)
T KOG2804|consen   60 TDRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCRYVDEVIPNAPWT  139 (348)
T ss_pred             CCCceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecChHHHHHHhhhhhhhhhhccCCCcc
Confidence            5788999999999999999999999999997  68999999999988999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCCcEEEeccCCCCCHHHHHHHHHhccc
Q 014487          140 ITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSME  205 (423)
Q Consensus       140 ~~~efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~iSST~Ir~rI~~~~~  205 (423)
                      ++++||+    ++++|+|.|.+-+....+..|.|..+|+.|++++..||+||||++|+-||...+-
T Consensus       140 lt~EFL~----~HKIDfVAHDdIPY~s~gsdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVrDYD  201 (348)
T KOG2804|consen  140 LTPEFLE----KHKIDFVAHDDIPYVSAGSDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVRDYD  201 (348)
T ss_pred             ccHHHHH----hcccceeeccCccccCCCchhHHHHHHHhcccccccccCCccHHHHHHHHHHhHH
Confidence            9999985    7899999999887666666678999999999999999999999999999986543

>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional

Probab=99.95  E-value=1.6e-27  Score=240.38  Aligned_cols=140  Identities=31%  Similarity=0.601  Sum_probs=128.2

Q ss_pred             CCCCCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCC
Q 014487          252 PGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW  331 (423)
Q Consensus       252 ~~~~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~  331 (423)
                      ..++.++||++|+||++|.||+.+|++|+++||.|+||+++|+.+.+.||+  |+|+++||++++++|+|||+|+++.|+
T Consensus         7 ~~~~~~~v~~~G~FD~vH~GH~~~L~qAk~~g~~Livgv~~d~~i~~~K~~--pi~~~eeR~~~l~~~~~VD~Vv~~~p~   84 (353)
T PTZ00308          7 KKPGTIRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGP--PVMHQEERYEALRACKWVDEVVEGYPY   84 (353)
T ss_pred             CCCCcEEEEEEeecccCCHHHHHHHHHHHHhCCEEEEEeCCHHHHhhcCCC--CCCCHHHHHHHHHhcCCccEEEECCCC
Confidence            345668999999999999999999999999999999999999999988885  899999999999999999999998888


Q ss_pred             CchHHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhch
Q 014487          332 EVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANH  396 (423)
Q Consensus       332 ~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI~~~~  396 (423)
                      ..+.+++++++||++|+|+||..+   ..+.+.|..++..|++.++++++++|||+|++||+...
T Consensus        85 ~~~~~fI~~l~~d~vv~GdD~~~g---~~g~~~~~~lk~~G~~~~v~rt~g~STt~ii~ril~~~  146 (353)
T PTZ00308         85 TTRLEDLERLECDFVVHGDDISVD---LNGRNSYQEIIDAGKFKVVKRTEGISTTDLVGRMLLCT  146 (353)
T ss_pred             CchHHHHHHhCCCEEEECCCCCCC---CCccchHHHHHhCCeEEEEecCCCCCHHHHHHHHHHhh
Confidence            888889999999999999998664   34567788999999999999999999999999998543

>cd02172 RfaE_N N-terminal domain of RfaE

Probab=99.95  E-value=1.2e-26  Score=206.92  Aligned_cols=134  Identities=25%  Similarity=0.367  Sum_probs=116.8

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEecCCccccHHH
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~~ef  144 (423)
                      .++|+++|+||++|.||+++|++|+++++.++|++++|+.+.+.+++|++|.+||.+++++++|||.++. .|+...++|
T Consensus         4 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~lg~VD~vi~-~~~~~~~~f   82 (144)
T cd02172           4 KTVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAALGFVDYVVL-FDNPTALEI   82 (144)
T ss_pred             CEEEEEecccCCCCHHHHHHHHHHHHhCCeEEEEEeChHHhccCCCCCCCCHHHHHHHHHccCCccEEEE-CCCCCHHHH
Confidence            4689999999999999999999999999999999999987765555899999999999999988999998 455555777


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCC-----CcHHHHHHhCCcEEEeccCCCCCHHHHHHHHHhc
Q 014487          145 MNRLFNEHKIDYIIHGDDPCLLPDG-----TDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (423)
Q Consensus       145 l~~ll~~~~~d~VV~G~D~~~g~~g-----~~~~~~lk~~g~~~~v~r~~~iSST~Ir~rI~~~  203 (423)
                      ++    ++++++||+|+||+||.++     .+.++.+++.|....+.+++++|||+|++||+..
T Consensus        83 i~----~l~~~~vv~G~d~~fg~~~~~~~~~g~~~~l~~~g~~~~~~~~~~~sts~li~~i~~~  142 (144)
T cd02172          83 ID----ALQPNIYVKGGDYENPENDVTGKIAPEAEAVKAYGGKIVFTGEIVFSSSALINRIFDE  142 (144)
T ss_pred             HH----HhCCCEEEECCCcccCccccccchhhhHHHHHHhCCEEEEecCCCcchHHHHHHHHhh
Confidence            75    6899999999999999875     6778889888765444499999999999999754

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .

>cd02170 cytidylyltransferase cytidylyltransferase

Probab=99.94  E-value=2.2e-26  Score=202.76  Aligned_cols=133  Identities=44%  Similarity=0.675  Sum_probs=118.5

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEecCCccccHHH
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~~ef  144 (423)
                      +++|+++|+||++|.||+.+|++|+++++.++|++++|+.+.+.|++|+++.+||.+++++|+|||.++...|++    |
T Consensus         1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~~~~vd~v~~~~~~~----~   76 (136)
T cd02170           1 MKRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKRRPILPEEQRAEVVEALKYVDEVILGHPWS----Y   76 (136)
T ss_pred             CeEEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHcCCCcCEEEECCCCC----H
Confidence            468999999999999999999999999999999999998776666679999999999999999999999877764    4


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCCcEEEec--cCCCCCHHHHHHHHHh
Q 014487          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK--RTEGVSSTDIVGRILS  202 (423)
Q Consensus       145 l~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g~~~~v~--r~~~iSST~Ir~rI~~  202 (423)
                      ++.+ .+++|+++|+|+||+||.++.+.++.+++.|..+.+.  .+.++|||.||++|+.
T Consensus        77 ~~~l-~~~~~~~vv~G~d~~fg~~~~~~~~~l~~~g~~~~~~~~~~~~vSSt~Ir~~i~~  135 (136)
T cd02170          77 FKPL-EELKPDVIVLGDDQKNGVDEEEVYEELKKRGKVIEVPRKKTEGISSSDIIKRILE  135 (136)
T ss_pred             hHHH-HHHCCCEEEECCCCCCCCcchhHHHHHHHCCeEEEECCCCCCCCcHHHHHHHHHh
Confidence            4433 4578999999999999999999999999999988888  7788999999999963

The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.

>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.94  E-value=5.4e-27  Score=233.45  Aligned_cols=136  Identities=29%  Similarity=0.424  Sum_probs=123.5

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCch
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVT  334 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~  334 (423)
                      ..++|+++||||++|.||+.+|.+||++||.||||++||.++++.||..|||.+++.|+.++.++..||.|++++. +++
T Consensus       331 ~~~vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~F~e-dTP  409 (467)
T COG2870         331 GKKVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVIFDE-DTP  409 (467)
T ss_pred             cCeEEEecchhhhccccHHHHHHHHHhhCCeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEEecC-CCH
Confidence            3569999999999999999999999999999999999999999999999999999999999999999999999984 567


Q ss_pred             HHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhc
Q 014487          335 KDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIAN  395 (423)
Q Consensus       335 ~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI~~~  395 (423)
                      .++|+.++||++|+|.||.....  -+.  ..+..++|....++...+.|||.||++|...
T Consensus       410 ~~LI~~~~PdilVKGgDy~~~~i--~g~--~~v~~~GG~v~~i~f~~g~STt~ii~ki~~~  466 (467)
T COG2870         410 EELIEAVKPDILVKGGDYKIEKI--VGA--DIVEAYGGEVLLIPFEEGKSTTKIIEKIRAK  466 (467)
T ss_pred             HHHHHHhCcceEEccCCCChhhc--cch--hhhhhcCCeEEEEecccCCcHHHHHHHHhcc
Confidence            89999999999999999977654  222  2456789999999999999999999999653

>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II

Probab=99.93  E-value=4.2e-25  Score=197.01  Aligned_cols=130  Identities=35%  Similarity=0.528  Sum_probs=109.2

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCC--CCCCcHHHHHHHHhcCccccEEEecCCccccH
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAITE  142 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~~  142 (423)
                      .++|+++|+||++|.||+++|++|+++|+.++|++++|+.....++  +|+++.+||.+++++|+|||+++...+. ..+
T Consensus        11 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~-~~~   89 (144)
T TIGR02199        11 KKIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDED-TPE   89 (144)
T ss_pred             CCEEEEeCcccccCHHHHHHHHHHHHhCCccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCC-CHH
Confidence            5689999999999999999999999999999999999997653444  6899999999999999999999984332 235


Q ss_pred             HHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhC-CcEEEeccCCCCCHHHHHHHHH
Q 014487          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKV-GRYKQIKRTEGVSSTDIVGRIL  201 (423)
Q Consensus       143 efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~-g~~~~v~r~~~iSST~Ir~rI~  201 (423)
                      +|++    +++++++|+|+||++...  ..++.+++. |++..+++++++|||+||+||+
T Consensus        90 ~fi~----~l~~~~vv~G~d~~~~~~--~~~~~~~~~g~~v~~~~~~~~iSSs~Ir~ri~  143 (144)
T TIGR02199        90 ELIG----ELKPDILVKGGDYKVETL--VGAELVESYGGQVVLLPFVEGRSTTAIIEKIL  143 (144)
T ss_pred             HHHH----HhCCCEEEECCCCCCCcc--hhHHHHHHcCCEEEEEeCCCCcCHHHHHHHHh
Confidence            6764    689999999999988432  224556655 5899999999999999999996

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.

>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II

Probab=99.92  E-value=2.7e-24  Score=191.75  Aligned_cols=134  Identities=30%  Similarity=0.437  Sum_probs=116.8

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCch
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVT  334 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~  334 (423)
                      ++++|++.|+||.+|.||..+|++|+++|+.++|||+.|+...++|+...|+++++||++++++|++||.|+++++. .+
T Consensus        10 ~~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~-~~   88 (144)
T TIGR02199        10 GKKIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDED-TP   88 (144)
T ss_pred             CCCEEEEeCcccccCHHHHHHHHHHHHhCCccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCC-CH
Confidence            46899999999999999999999999999999999999999887777556999999999999999999999997654 46


Q ss_pred             HHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHH-hCCeEEEeCCCCCCCHHHHHHHHHh
Q 014487          335 KDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAK-SMGIFQLLESPKSITTTSVAQRIIA  394 (423)
Q Consensus       335 ~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k-~~G~~~~i~~~~~~Stt~Ii~RI~~  394 (423)
                      +++++.++|+++|+|.||..+.     ...++.++ .+|++.++++++++|||.|++||++
T Consensus        89 ~~fi~~l~~~~vv~G~d~~~~~-----~~~~~~~~~~g~~v~~~~~~~~iSSs~Ir~ri~~  144 (144)
T TIGR02199        89 EELIGELKPDILVKGGDYKVET-----LVGAELVESYGGQVVLLPFVEGRSTTAIIEKILK  144 (144)
T ss_pred             HHHHHHhCCCEEEECCCCCCCc-----chhHHHHHHcCCEEEEEeCCCCcCHHHHHHHHhC
Confidence            8999999999999999986542     12234445 4569999999999999999999963

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.

>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase

Probab=99.92  E-value=1.8e-24  Score=188.15  Aligned_cols=123  Identities=35%  Similarity=0.508  Sum_probs=102.2

Q ss_pred             EEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEecCCccccHHHHHH
Q 014487           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNR  147 (423)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~~efl~~  147 (423)
                      |++.|+||++|.||+++|++|+++|+.++|++++|+.....+++|+++.+||++++++|+|||.++...|+   ++|++.
T Consensus         1 v~~~G~FDg~H~GH~~~l~~a~~~~~~~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~---~~f~~~   77 (125)
T TIGR01518         1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDLVIPEKSW---EQKKQD   77 (125)
T ss_pred             CEEcceeCCCCHHHHHHHHHHHHcCCEEEEEEechHHHhhcCCCCCCCHHHHHHHHHcCCCccEEecCCCc---cchHHH
Confidence            57899999999999999999999999999999999866544558999999999999999999999775554   345544


Q ss_pred             HHhhcCccEEEEcCCCCCCCCCCcHHHHHHhC--CcEEEeccCCCCCHHHHHHHH
Q 014487          148 LFNEHKIDYIIHGDDPCLLPDGTDAYALAKKV--GRYKQIKRTEGVSSTDIVGRI  200 (423)
Q Consensus       148 ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~--g~~~~v~r~~~iSST~Ir~rI  200 (423)
                      + ++++||++++|+||.      ++++.++..  .++..+++++++|||.||+.|
T Consensus        78 l-~~~~~~~vv~G~D~~------g~~~~l~~~~~~~v~~v~~~~~vSST~Ir~~~  125 (125)
T TIGR01518        78 I-IDFNIDVFVMGDDWE------GKFDFLKDECPLKVVYLPRTEGVSTTKIKKEI  125 (125)
T ss_pred             H-HHcCCCEEEECCCcc------chHHHHhhccCcEEEEeCCCCCccHHHHHhhC
Confidence            3 689999999999992      445566544  357788888999999999864

Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.

>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase

Probab=99.92  E-value=3.9e-24  Score=186.73  Aligned_cols=128  Identities=32%  Similarity=0.489  Sum_probs=107.9

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEecCCccccHHH
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~~ef  144 (423)
                      +++|+++|+||++|.||+.+|++|+++++++++++++|+.....+.++++|.+||++++++++|||+++...++   ++|
T Consensus         1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~~~vd~v~~~~~~---~~f   77 (129)
T cd02171           1 MKVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFNAGKGKKAVIPYEQRAEILESIRYVDLVIPETNW---EQK   77 (129)
T ss_pred             CcEEEEeeeeccCCHHHHHHHHHHHHhCCEEEEEEeccHhHHhcCCCCCCCHHHHHHHHHcCCccCEEecCCCc---cCh
Confidence            45899999999999999999999999999999999998743322336899999999999999999999754333   345


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCCcEEEeccCCCCCHHHHHHHHHh
Q 014487          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILS  202 (423)
Q Consensus       145 l~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~iSST~Ir~rI~~  202 (423)
                      ++.+ ++++++++++|+||.      +.++.+++.+++..++++.++|||.||++|..
T Consensus        78 ~~~~-~~l~~~~vv~G~d~~------g~~~~l~~~~~v~~~~~~~~iSSt~Ir~~i~~  128 (129)
T cd02171          78 IEDI-KKYNVDVFVMGDDWE------GKFDFLKEYCEVVYLPRTKGISSTQLKEMLKK  128 (129)
T ss_pred             HHHH-HHhCCCEEEECCCCc------chHHHHHhCcEEEEeCCCCCcChHHHHHHHhh
Confidence            5443 678999999999992      46788999999999999889999999999863

Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.

>cd02172 RfaE_N N-terminal domain of RfaE

Probab=99.91  E-value=2.2e-23  Score=185.93  Aligned_cols=138  Identities=25%  Similarity=0.337  Sum_probs=114.5

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCch
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVT  334 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~  334 (423)
                      ++++|++.|+||++|.||..+|++|+++++.++|++++|+.++..+  .+|+++++||++++++|+|||.|++.+ ...+
T Consensus         3 ~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~vv~~~~d~~~~~~~--~~~i~~~~eR~~~l~~lg~VD~vi~~~-~~~~   79 (144)
T cd02172           3 GKTVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGP--GRPIFPEDLRAEVLAALGFVDYVVLFD-NPTA   79 (144)
T ss_pred             CCEEEEEecccCCCCHHHHHHHHHHHHhCCeEEEEEeChHHhccCC--CCCCCCHHHHHHHHHccCCccEEEECC-CCCH
Confidence            4688999999999999999999999999999999999998877544  379999999999999999999999874 4567


Q ss_pred             HHHHhhcCccEEEecCCcCCCCCC---CCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhch
Q 014487          335 KDMITTFNICLVVHGTVSETNTPL---TGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANH  396 (423)
Q Consensus       335 ~~~i~~~~~d~vv~G~d~~~~~~~---~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI~~~~  396 (423)
                      ++++++++|+++|+|.||....-.   ....+...+.+.++.+.+. ++.++|||+|++||+.+.
T Consensus        80 ~~fi~~l~~~~vv~G~d~~fg~~~~~~~~~g~~~~l~~~g~~~~~~-~~~~~sts~li~~i~~~~  143 (144)
T cd02172          80 LEIIDALQPNIYVKGGDYENPENDVTGKIAPEAEAVKAYGGKIVFT-GEIVFSSSALINRIFDEL  143 (144)
T ss_pred             HHHHHHhCCCEEEECCCcccCccccccchhhhHHHHHHhCCEEEEe-cCCCcchHHHHHHHHhhc
Confidence            899999999999999998654210   0012223344455666777 999999999999998775

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .

>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional

Probab=99.90  E-value=2.5e-23  Score=218.21  Aligned_cols=135  Identities=28%  Similarity=0.390  Sum_probs=122.1

Q ss_pred             CCCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCc
Q 014487          254 PNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEV  333 (423)
Q Consensus       254 ~~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~  333 (423)
                      .+.++|++.|+||++|.||+++|++|+++||+|+|||++|+.++..||.++|+++++||.+.+++|++||+|+.++ ...
T Consensus       338 ~~~~iv~~~G~fD~~H~GH~~~l~~a~~~~~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~-~~~  416 (473)
T PRK11316        338 RGEKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFE-EDT  416 (473)
T ss_pred             cCCeEEEEecccccCCHHHHHHHHHHHHhCCeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCC-CCC
Confidence            3579999999999999999999999999999999999999999989997789999999999999999999999876 446


Q ss_pred             hHHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHH
Q 014487          334 TKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRII  393 (423)
Q Consensus       334 ~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI~  393 (423)
                      +.+++++++||++++|+||..+..    ...+.+.+.+|+++++++++++|||+|++||.
T Consensus       417 ~~~~~~~~~~d~vv~G~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~st~~i~~ri~  472 (473)
T PRK11316        417 PQRLIAEILPDLLVKGGDYKPEEI----AGSKEVWANGGEVKVLNFEDGCSTTNIIKKIR  472 (473)
T ss_pred             HHHHHHHhCCCEEEECCCCCCCcc----ccHHHHHHcCCEEEEEcCCCCcCHHHHHHHHh
Confidence            789999999999999999865421    33567788999999999999999999999995

>cd02170 cytidylyltransferase cytidylyltransferase

Probab=99.90  E-value=6.9e-23  Score=180.46  Aligned_cols=133  Identities=32%  Similarity=0.613  Sum_probs=116.3

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCchH
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK  335 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~~  335 (423)
                      ++++++.|+||++|.||+.+|++|++++|+++|+++.|+.++..|+  .|+++.+||++++++|++||.+++.+|++...
T Consensus         1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~l~v~v~~~~~~~~~~~--~~~~~~~eR~~~l~~~~~vd~v~~~~~~~~~~   78 (136)
T cd02170           1 MKRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKR--RPILPEEQRAEVVEALKYVDEVILGHPWSYFK   78 (136)
T ss_pred             CeEEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECCcHHHHhcCC--CCCCCHHHHHHHHHcCCCcCEEEECCCCCHhH
Confidence            4789999999999999999999999999999999999988876664  49999999999999999999999999887654


Q ss_pred             HHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeC--CCCCCCHHHHHHHHHh
Q 014487          336 DMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLE--SPKSITTTSVAQRIIA  394 (423)
Q Consensus       336 ~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~--~~~~~Stt~Ii~RI~~  394 (423)
                       .+.+++||++|+|.||..+   ......+..++..|....++  ++..+|||.|+++|++
T Consensus        79 -~l~~~~~~~vv~G~d~~fg---~~~~~~~~~l~~~g~~~~~~~~~~~~vSSt~Ir~~i~~  135 (136)
T cd02170          79 -PLEELKPDVIVLGDDQKNG---VDEEEVYEELKKRGKVIEVPRKKTEGISSSDIIKRILE  135 (136)
T ss_pred             -HHHHHCCCEEEECCCCCCC---CcchhHHHHHHHCCeEEEECCCCCCCCcHHHHHHHHHh
Confidence             5677999999999998654   23445577788889988888  8899999999999953

The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.

>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase

Probab=99.88  E-value=4.2e-22  Score=173.33  Aligned_cols=124  Identities=33%  Similarity=0.497  Sum_probs=103.1

Q ss_pred             EEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCchHHHH
Q 014487          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMI  338 (423)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~~~~i  338 (423)
                      |++.|+||++|.||.++|++|+++|++++|||++|+.....+ + .|+++++||++++++|+|||.|+++.|+....+.+
T Consensus         1 v~~~G~FDg~H~GH~~~l~~a~~~~~~~iv~v~~d~~~~~~~-~-~~i~~~eeR~~~l~~~~~Vd~vi~~~~~~~f~~~l   78 (125)
T TIGR01518         1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQ-K-KAYHSYEHRKLILETIRYVDLVIPEKSWEQKKQDI   78 (125)
T ss_pred             CEEcceeCCCCHHHHHHHHHHHHcCCEEEEEEechHHHhhcC-C-CCCCCHHHHHHHHHcCCCccEEecCCCccchHHHH
Confidence            578899999999999999999999999999999999765433 2 69999999999999999999998888777666778


Q ss_pred             hhcCccEEEecCCcCCCCCCCCCCChHHHHH-hCCeEEEeCCCCCCCHHHHHHHH
Q 014487          339 TTFNICLVVHGTVSETNTPLTGQSDPYEVAK-SMGIFQLLESPKSITTTSVAQRI  392 (423)
Q Consensus       339 ~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k-~~G~~~~i~~~~~~Stt~Ii~RI  392 (423)
                      +.++||++++|.||..+.      +  .+.+ .++....++++..+|||.|++.|
T Consensus        79 ~~~~~~~vv~G~D~~g~~------~--~l~~~~~~~v~~v~~~~~vSST~Ir~~~  125 (125)
T TIGR01518        79 IDFNIDVFVMGDDWEGKF------D--FLKDECPLKVVYLPRTEGVSTTKIKKEI  125 (125)
T ss_pred             HHcCCCEEEECCCccchH------H--HHhhccCcEEEEeCCCCCccHHHHHhhC
Confidence            999999999999984321      1  1111 23467788999999999998764

Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.

>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase

Probab=99.88  E-value=1.5e-21  Score=170.34  Aligned_cols=127  Identities=30%  Similarity=0.504  Sum_probs=108.4

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCchH
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK  335 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~~  335 (423)
                      +++|++.|+||++|.||..+|++|++++++|+|+|++|+.. ..+++ .|++|++||++++++|++||.|+.+.++....
T Consensus         1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~v~v~~d~~~-~~~~~-~~~~~~~~R~~~l~~~~~vd~v~~~~~~~~f~   78 (129)
T cd02171           1 MKVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFN-AGKGK-KAVIPYEQRAEILESIRYVDLVIPETNWEQKI   78 (129)
T ss_pred             CcEEEEeeeeccCCHHHHHHHHHHHHhCCEEEEEEeccHhH-HhcCC-CCCCCHHHHHHHHHcCCccCEEecCCCccChH
Confidence            36899999999999999999999999999999999999743 34443 69999999999999999999998766655556


Q ss_pred             HHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHH
Q 014487          336 DMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRII  393 (423)
Q Consensus       336 ~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI~  393 (423)
                      +.++.++|+++++|.||..+         +...+..|.+..++.+..+|||.|.+.|.
T Consensus        79 ~~~~~l~~~~vv~G~d~~g~---------~~~l~~~~~v~~~~~~~~iSSt~Ir~~i~  127 (129)
T cd02171          79 EDIKKYNVDVFVMGDDWEGK---------FDFLKEYCEVVYLPRTKGISSTQLKEMLK  127 (129)
T ss_pred             HHHHHhCCCEEEECCCCcch---------HHHHHhCcEEEEeCCCCCcChHHHHHHHh
Confidence            66788999999999988432         35567778899999999999999999885

Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.

>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme

Probab=99.86  E-value=2.9e-21  Score=178.33  Aligned_cols=134  Identities=25%  Similarity=0.358  Sum_probs=104.3

Q ss_pred             EEEecccCcCcHHHHHHHHHHHHhcC---eeEEEEecch--hhh--ccCC-CCCCcHHHHHHHHhcCccccEEEecCCcc
Q 014487           68 VYMDGCFDLMHYGHANALRQAKALGD---ELVVGVVSDE--EII--ANKG-PPVLSMEERLALVSGLKWVDEVIANAPYA  139 (423)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d---~LiVgV~sd~--~i~--~~K~-~pi~t~eER~~~l~~~~~VD~vi~~~p~~  139 (423)
                      |+++|+|||+|.||+.+|++|+++|+   ...+.++.++  ...  +.+. .++++.++|+++++++ +||+++. .||+
T Consensus         2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l-~vd~v~~-~~f~   79 (180)
T cd02064           2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESL-GVDYLLV-LPFD   79 (180)
T ss_pred             EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHc-CCCEEEE-eCCC
Confidence            78999999999999999999999974   2344444444  321  2222 6899999999999998 4999998 4553


Q ss_pred             -----cc-HHHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCC-----cEEEeccC----CCCCHHHHHHHHHhc
Q 014487          140 -----IT-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-----RYKQIKRT----EGVSSTDIVGRILSS  203 (423)
Q Consensus       140 -----~~-~efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g-----~~~~v~r~----~~iSST~Ir~rI~~~  203 (423)
                           ++ ++|+++++.+.+++++|+|+||+||.++.++.+.+++.+     ++..++..    ..||||.||+.|.++
T Consensus        80 ~~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~~~g~~~~L~~~~~~~g~~v~~v~~~~~~~~~iSST~IR~~i~~G  158 (180)
T cd02064          80 KEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGERVSSTRIREALAEG  158 (180)
T ss_pred             HHHHcCCHHHHHHHHHhhcCCeEEEEccCCCCCCCCCCCHHHHHHhhhhcCcEEEEeCcEecCCcEEcHHHHHHHHHhC
Confidence                 12 478888776669999999999999999998888776543     35666653    469999999999865

FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.

>PRK07143 hypothetical protein; Provisional

Probab=99.86  E-value=7.5e-21  Score=186.43  Aligned_cols=137  Identities=16%  Similarity=0.258  Sum_probs=112.2

Q ss_pred             CCeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhcc-CCCCCCcHHHHHHHHhcCccccEEEecCCcc---
Q 014487           64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KGPPVLSMEERLALVSGLKWVDEVIANAPYA---  139 (423)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~-K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~---  139 (423)
                      +.+.|+++|+|||+|.||+.+|++|++.+..++|...+++..... +.+++++.+||.++++++ ++|.++. .||+   
T Consensus        14 ~~~~vvaiG~FDGvH~GHq~Ll~~a~~~~~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~-Gvd~~~~-~~F~~~~   91 (279)
T PRK07143         14 FEKPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLANL-GFKNIIL-LDFNEEL   91 (279)
T ss_pred             CCCeEEEEccCCcCCHHHHHHHHHHHHCCCcEEEEEeCChHHhcccCcccCCCHHHHHHHHHHC-CCCEEEE-eCCCHHH
Confidence            345799999999999999999999999988777777666543222 225699999999999998 8899887 5553   


Q ss_pred             ---ccHHHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCC-cEEEecc----CCCCCHHHHHHHHHhc
Q 014487          140 ---ITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKR----TEGVSSTDIVGRILSS  203 (423)
Q Consensus       140 ---~~~efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~r----~~~iSST~Ir~rI~~~  203 (423)
                         -.++|++.++. ++++.||+|+||+||+++.++.+.|++.+ .+..++.    ...||||.||+.|.++
T Consensus        92 a~ls~e~Fi~~ll~-l~~~~iVvG~Df~FG~~r~G~~~~L~~~~~~v~~v~~~~~~g~~ISST~IR~~l~~G  162 (279)
T PRK07143         92 QNLSGNDFIEKLTK-NQVSFFVVGKDFRFGKNASWNADDLKEYFPNVHIVEILKINQQKISTSLLKEFIEFG  162 (279)
T ss_pred             hCCCHHHHHHHHHh-cCCCEEEECCCcccCCCCCCCHHHHHHhCCcEEEeCCEEcCCcEEcHHHHHHHHHcC
Confidence               12589988774 99999999999999999999999999988 5665554    2359999999999865

>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional

Probab=99.84  E-value=1.2e-20  Score=198.11  Aligned_cols=132  Identities=30%  Similarity=0.457  Sum_probs=112.8

Q ss_pred             CCeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCC--CCCCcHHHHHHHHhcCccccEEEecCCcccc
Q 014487           64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAIT  141 (423)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~  141 (423)
                      ..++|++.|+||++|.||+++|++|+++|+.++|||++|+.+...|+  .|+++.+||.+++++|++||.|++.. ....
T Consensus       339 ~~~iv~~~G~fD~~H~GH~~~l~~a~~~~~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~-~~~~  417 (473)
T PRK11316        339 GEKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFE-EDTP  417 (473)
T ss_pred             CCeEEEEecccccCCHHHHHHHHHHHHhCCeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCC-CCCH
Confidence            35789999999999999999999999999999999999998866665  68999999999999999999998632 2233


Q ss_pred             HHHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 014487          142 EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRIL  201 (423)
Q Consensus       142 ~efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~iSST~Ir~rI~  201 (423)
                      .+|+    ++++||++|+|+||.+... .+.+...+..|+++.+++++++|||+|++||+
T Consensus       418 ~~~~----~~~~~d~vv~G~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~st~~i~~ri~  472 (473)
T PRK11316        418 QRLI----AEILPDLLVKGGDYKPEEI-AGSKEVWANGGEVKVLNFEDGCSTTNIIKKIR  472 (473)
T ss_pred             HHHH----HHhCCCEEEECCCCCCCcc-ccHHHHHHcCCEEEEEcCCCCcCHHHHHHHHh
Confidence            4554    5678999999999987542 34456667889999999999999999999996

>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed

Probab=99.84  E-value=2.5e-20  Score=185.28  Aligned_cols=135  Identities=24%  Similarity=0.338  Sum_probs=106.2

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCee---EEEEecchh--h--hccCC-CCCCcHHHHHHHHhcCccccEEEecCCc
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDEL---VVGVVSDEE--I--IANKG-PPVLSMEERLALVSGLKWVDEVIANAPY  138 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~L---iVgV~sd~~--i--~~~K~-~pi~t~eER~~~l~~~~~VD~vi~~~p~  138 (423)
                      +|+++|+|||+|.||+++|++|+++|+.+   .+.++.|+.  .  .+.+. +++++.+||.++++++ +||.++. .||
T Consensus        15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~-gVD~~~~-~~F   92 (305)
T PRK05627         15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAEL-GVDYVLV-LPF   92 (305)
T ss_pred             EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHc-CCCEEEE-ecC
Confidence            79999999999999999999999998542   233444432  1  11222 6899999999999999 5999998 566


Q ss_pred             c-----c-cHHHHHHHH-hhcCccEEEEcCCCCCCCCCCcHHHHHHhCC-----cEEEecc----CCCCCHHHHHHHHHh
Q 014487          139 A-----I-TEQFMNRLF-NEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-----RYKQIKR----TEGVSSTDIVGRILS  202 (423)
Q Consensus       139 ~-----~-~~efl~~ll-~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g-----~~~~v~r----~~~iSST~Ir~rI~~  202 (423)
                      +     + .++|+++++ ++++++++|+|+||+||.++.++++.+++.+     ++..++.    ...||||.||+.|.+
T Consensus        93 ~~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISST~IR~~I~~  172 (305)
T PRK05627         93 DEEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVKEDGERVSSTAIRQALAE  172 (305)
T ss_pred             CHHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcEEEEeccEecCCCcCchHHHHHHHHc
Confidence            3     1 258998844 5799999999999999999999999988763     3455544    356999999999986


Q ss_pred             c
Q 014487          203 S  203 (423)
Q Consensus       203 ~  203 (423)
                      +
T Consensus       173 G  173 (305)
T PRK05627        173 G  173 (305)
T ss_pred             C
Confidence            6

>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2

Probab=99.81  E-value=8e-20  Score=165.28  Aligned_cols=130  Identities=26%  Similarity=0.422  Sum_probs=91.8

Q ss_pred             CCeEEEEecccCcCcHHHHHHHHHHHHhc---C--eeEEEEecchhhhcc--CC-CCCCcHHHHHHHHhcCccccEEEec
Q 014487           64 KRVRVYMDGCFDLMHYGHANALRQAKALG---D--ELVVGVVSDEEIIAN--KG-PPVLSMEERLALVSGLKWVDEVIAN  135 (423)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~---d--~LiVgV~sd~~i~~~--K~-~pi~t~eER~~~l~~~~~VD~vi~~  135 (423)
                      ..+.++++|+|||+|.||+.||++|++.+   +  .+++.+.++|.....  +. ..+++.+||.++++.+ +||+++. 
T Consensus         4 ~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~-Gvd~~~~-   81 (157)
T PF06574_consen    4 NKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL-GVDYVIV-   81 (157)
T ss_dssp             -S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT-TESEEEE-
T ss_pred             CCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc-CCCEEEE-
Confidence            45689999999999999999999999997   2  245555555532222  22 5699999999999997 8999887 


Q ss_pred             CCcccc------HHHHHHHHh-hcCccEEEEcCCCCCCCCCCcHHHHHHhCCc-----EEEeccC----CCCCHHH
Q 014487          136 APYAIT------EQFMNRLFN-EHKIDYIIHGDDPCLLPDGTDAYALAKKVGR-----YKQIKRT----EGVSSTD  195 (423)
Q Consensus       136 ~p~~~~------~efl~~ll~-~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g~-----~~~v~r~----~~iSST~  195 (423)
                      .||+-+      ++|++.++. ++++..||+|+||+||+++.++.+.|++.++     +..++..    ..||||+
T Consensus        82 ~~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISStr  157 (157)
T PF06574_consen   82 IPFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKNRSGDVELLKELGKEYGFEVEVVPPVKIDGEKISSTR  157 (157)
T ss_dssp             E-CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGGGEEEHHHHHHCTTTT-SEEEEE---EETTEE-SHHH
T ss_pred             ecchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCCCCCCHHHHHHhcccCceEEEEECCEEcCCcEeCCCC
Confidence            455322      599999776 8999999999999999999999999999885     3444432    2499985

7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.

>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase

Probab=99.80  E-value=3.2e-19  Score=175.89  Aligned_cols=134  Identities=18%  Similarity=0.259  Sum_probs=105.0

Q ss_pred             EEEecccCcCcHHHHHHHHHHHHhc-----CeeEEEEecchhhhc--cCCCCCCcHHHHHHHHhcCccccEEEecCCccc
Q 014487           68 VYMDGCFDLMHYGHANALRQAKALG-----DELVVGVVSDEEIIA--NKGPPVLSMEERLALVSGLKWVDEVIANAPYAI  140 (423)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~-----d~LiVgV~sd~~i~~--~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~  140 (423)
                      ++++|+|||+|.||+.+|++|++.+     ..+++.+.++|....  .+.+++++.+||.++++.+ +||.++. .||+-
T Consensus         1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~-Gvd~~~~-~~F~~   78 (288)
T TIGR00083         1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK-GVEQLLV-VVFDE   78 (288)
T ss_pred             CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc-CCCEEEE-eCCCH
Confidence            5899999999999999999999875     245555555554222  2223499999999999998 8999998 56632


Q ss_pred             -----c-HHHHHHHH-hhcCccEEEEcCCCCCCCCCCcHHHHHHhCCcE-----EEecc---CCCCCHHHHHHHHHhc
Q 014487          141 -----T-EQFMNRLF-NEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRY-----KQIKR---TEGVSSTDIVGRILSS  203 (423)
Q Consensus       141 -----~-~efl~~ll-~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g~~-----~~v~r---~~~iSST~Ir~rI~~~  203 (423)
                           + ++|+++++ ++++++.||+|+||+||.++.++.+.|++.++.     ..++.   ...||||.||+.|.++
T Consensus        79 ~~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~~~~~~~~~~ISST~IR~~l~~G  156 (288)
T TIGR00083        79 EFANLSALQFIDQLIVKHLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIFCVIVKQLFCQDIRISSSAIRQALKNG  156 (288)
T ss_pred             HHHcCCHHHHHHHHHHhccCCcEEEECCCccCCCCCCCCHHHHHHhccccCcEEEEeccccCCCeECHHHHHHHHHcC
Confidence                 2 48998876 469999999999999999999999999987752     22222   2359999999999876

multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).

>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.79  E-value=5.5e-19  Score=176.52  Aligned_cols=132  Identities=36%  Similarity=0.509  Sum_probs=115.9

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCC--CCCCcHHHHHHHHhcCccccEEEecCCccccH
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAITE  142 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~~  142 (423)
                      .+.|++.||||.+|.||..+|.+|+++||.|+||++||.++.+.||  +||.+++.|+..+.+++.||.|+.     |++
T Consensus       332 ~~vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~-----F~e  406 (467)
T COG2870         332 KKVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVI-----FDE  406 (467)
T ss_pred             CeEEEecchhhhccccHHHHHHHHHhhCCeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEE-----ecC
Confidence            3489999999999999999999999999999999999999988888  899999999999999999999998     466


Q ss_pred             HHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCCcEEEeccCCCCCHHHHHHHHHh
Q 014487          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILS  202 (423)
Q Consensus       143 efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~iSST~Ir~rI~~  202 (423)
                      |+-.+|++.+.||.+|.|-||+...- .+........|++..++..++.|||.|+++|..
T Consensus       407 dTP~~LI~~~~PdilVKGgDy~~~~i-~g~~~v~~~GG~v~~i~f~~g~STt~ii~ki~~  465 (467)
T COG2870         407 DTPEELIEAVKPDILVKGGDYKIEKI-VGADIVEAYGGEVLLIPFEEGKSTTKIIEKIRA  465 (467)
T ss_pred             CCHHHHHHHhCcceEEccCCCChhhc-cchhhhhhcCCeEEEEecccCCcHHHHHHHHhc
Confidence            66677888899999999999975321 233345567889999999999999999999975

>COG0196 RibF FAD synthase [Coenzyme metabolism]

Probab=99.75  E-value=6.7e-18  Score=166.81  Aligned_cols=137  Identities=23%  Similarity=0.336  Sum_probs=106.5

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcC-----eeEEEEecchhhh--ccCC-CCCCcHHHHHHHHhcCccccEEEecC
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGD-----ELVVGVVSDEEII--ANKG-PPVLSMEERLALVSGLKWVDEVIANA  136 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d-----~LiVgV~sd~~i~--~~K~-~pi~t~eER~~~l~~~~~VD~vi~~~  136 (423)
                      ...++++|+|||+|.||+.+|++|++.+.     .+++...+.|...  +.+. ..+++.++|.+.++.+ +||.++. .
T Consensus        15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~-gvd~~~v-~   92 (304)
T COG0196          15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGY-GVDALVV-L   92 (304)
T ss_pred             CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhc-CCcEEEE-E
Confidence            45899999999999999999999998762     2344444444321  1111 3499999999999998 8999987 4


Q ss_pred             Ccccc------HHHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCCc----EEEeccC--C--CCCHHHHHHHHHh
Q 014487          137 PYAIT------EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR----YKQIKRT--E--GVSSTDIVGRILS  202 (423)
Q Consensus       137 p~~~~------~efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g~----~~~v~r~--~--~iSST~Ir~rI~~  202 (423)
                      +|+..      ++|++.+++.++++.||+|+||+||+++.++.++++..|+    +..++..  +  .||||.||+.+..
T Consensus        93 ~F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~~~g~~~~L~~~~~~gf~v~~v~~~~~~~~~iSSt~IR~~L~~  172 (304)
T COG0196          93 DFDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGNAELLRELGQKGFEVTIVPKINEEGIRISSTAIRQALRE  172 (304)
T ss_pred             eCCHhHhhCCHHHHHHHHHhccCCcEEEEecccccCCCCCCCHHHHHHhccCCceEEEeccEecCCcEEchHHHHHHHhc
Confidence            45421      4899977789999999999999999999999999998885    4444442  3  3999999999875


Q ss_pred             c
Q 014487          203 S  203 (423)
Q Consensus       203 ~  203 (423)
                      +
T Consensus       173 g  173 (304)
T COG0196         173 G  173 (304)
T ss_pred             C
Confidence            4

>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain

Probab=99.72  E-value=2.7e-17  Score=143.98  Aligned_cols=131  Identities=19%  Similarity=0.244  Sum_probs=97.7

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhc-CeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCcc-ccEEEe-cCCc---cc
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW-VDEVIA-NAPY---AI  140 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~-VD~vi~-~~p~---~~  140 (423)
                      .++++|+|||+|.||+.++++|++.+ +.++|++.+++.... +..++++.++|+++++.+.. ++.++. ..+.   ..
T Consensus         1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~~~   79 (143)
T cd02039           1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKK-RNKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKILL   79 (143)
T ss_pred             CeEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhc-ccccCCCHHHHHHHHHHhccCCcEEEEEecChhhccC
Confidence            37899999999999999999999999 999999988875432 13589999999999999853 666664 1111   11


Q ss_pred             cHHHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHh---CCcEEEeccC---CCCCHHHHHHH
Q 014487          141 TEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK---VGRYKQIKRT---EGVSSTDIVGR  199 (423)
Q Consensus       141 ~~efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~---~g~~~~v~r~---~~iSST~Ir~r  199 (423)
                      +.+|+..++..++++++++|.|+.++....+. +.++.   ..+++.+++.   ..||||.||++
T Consensus        80 ~~~~~~~~~~~~~~~~~v~G~d~~~~~~~~~~-~~~~~~~~~~~vv~~~~~~~~~~iSSt~IR~~  143 (143)
T cd02039          80 AVVFILKILLKVGPDKVVVGEDFAFGKNASYN-KDLKELFLDIEIVEVPRVRDGKKISSTLIREL  143 (143)
T ss_pred             HHHHHHHHHHHcCCcEEEECCccccCCchhhh-HHHHHhCCceEEEeeEecCCCcEEehHHhhcC
Confidence            22466666677999999999999998765543 23332   2356667776   45999999964

Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.

>PRK00777 phosphopantetheine adenylyltransferase; Provisional

Probab=99.71  E-value=1.9e-17  Score=149.20  Aligned_cols=132  Identities=26%  Similarity=0.339  Sum_probs=93.9

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEecCCcccc---H
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAIT---E  142 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~---~  142 (423)
                      ++|+++|+||++|.||.++|++|++++++|+|||++|+.+.++|+.|+++.++|++|++.  +++.+.+...+.+.   .
T Consensus         2 ~~v~~gGtFDplH~GH~~ll~~A~~~~d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~--~~~~~~~~~~~~i~~i~d   79 (153)
T PRK00777          2 MKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKK--FLKAVEYDREYEIVKIDD   79 (153)
T ss_pred             cEEEEecccCCCCHHHHHHHHHHHHcCCEEEEEEcCCccccccCCCCCCCHHHHHHHHHH--HHHhcCCCCcEEEEeccc
Confidence            589999999999999999999999999999999999987766666799999999999995  56655443333221   1


Q ss_pred             HHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCC----cEEEecc-----CCCCCHHHHHHHHHhc
Q 014487          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKR-----TEGVSSTDIVGRILSS  203 (423)
Q Consensus       143 efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g----~~~~v~r-----~~~iSST~Ir~rI~~~  203 (423)
                      .|....  ..++|++|+|+|-..+  +...-+..++.|    ++..++.     +..+|||.||+++.+.
T Consensus        80 ~~gp~~--~~~~d~ivvs~et~~~--~~~in~~r~~~gl~~l~i~~v~~~~~~~~~~~SSt~Ir~~~~~~  145 (153)
T PRK00777         80 PYGPAL--EDDFDAIVVSPETYPG--ALKINEIRRERGLKPLEIVVIDFVLAEDGKPISSTRIRRGEIDE  145 (153)
T ss_pred             cCCCcc--ccCCCEEEEChhhhhh--HHHHHHHHHHCCCCceEEEEEeeeecCCCCeeeHHHHHHhhhcc
Confidence            121111  2369999999993222  122223334444    2455554     4559999999988754

>PRK00777 phosphopantetheine adenylyltransferase; Provisional

Probab=99.68  E-value=1.6e-16  Score=143.17  Aligned_cols=130  Identities=22%  Similarity=0.334  Sum_probs=93.0

Q ss_pred             eEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhh----cccCeeEE---cC
Q 014487          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC----RYVDEVII---GA  329 (423)
Q Consensus       257 ~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~----~~Vd~Vvi---~~  329 (423)
                      +.|++.|+||++|.||+.+|++|+.+||+|+|||++|+.+..+|+  .|++++++|+++++.+    ...+.+.+   .+
T Consensus         2 ~~v~~gGtFDplH~GH~~ll~~A~~~~d~livgi~~d~~~~~~K~--~~i~~~e~R~~~v~~~~~~~~~~~~~~i~~i~d   79 (153)
T PRK00777          2 MKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKK--HKVRPYEVRLKNLKKFLKAVEYDREYEIVKIDD   79 (153)
T ss_pred             cEEEEecccCCCCHHHHHHHHHHHHcCCEEEEEEcCCccccccCC--CCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence            469999999999999999999999999999999999998877775  6999999999999854    12333332   23


Q ss_pred             CCCchHHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCC----eEEEeCC-----CCCCCHHHHHHHHHhchH
Q 014487          330 PWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMG----IFQLLES-----PKSITTTSVAQRIIANHE  397 (423)
Q Consensus       330 p~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G----~~~~i~~-----~~~~Stt~Ii~RI~~~~~  397 (423)
                      ++.++   + ..++|++|.|+|...+     +.......+..|    .+..++.     +..+|||.|++++.+.+.
T Consensus        80 ~~gp~---~-~~~~d~ivvs~et~~~-----~~~in~~r~~~gl~~l~i~~v~~~~~~~~~~~SSt~Ir~~~~~~~~  147 (153)
T PRK00777         80 PYGPA---L-EDDFDAIVVSPETYPG-----ALKINEIRRERGLKPLEIVVIDFVLAEDGKPISSTRIRRGEIDEHG  147 (153)
T ss_pred             cCCCc---c-ccCCCEEEEChhhhhh-----HHHHHHHHHHCCCCceEEEEEeeeecCCCCeeeHHHHHHhhhcccc
Confidence            33322   2 2369999999873222     111122333444    2344554     567999999999987654

>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional

Probab=99.63  E-value=6.4e-15  Score=133.54  Aligned_cols=131  Identities=18%  Similarity=0.256  Sum_probs=97.1

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh-hcccCeeEEcCCCCch
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVT  334 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~-~~~Vd~Vvi~~p~~~~  334 (423)
                      +++++++|+|||+|.||+.++++|++.+|+|+|+++++.    .|   +|+++.++|+.+++. ++.+|.+.+.+.++.+
T Consensus         1 ~~igi~gGsFdP~H~GHl~~~~~a~~~~d~v~v~~~~~~----~k---~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t   73 (159)
T PRK00168          1 MKIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINP----SK---KPLFSLEERVELIREATAHLPNVEVVSFDGLL   73 (159)
T ss_pred             CcEEEEeeecCCCCHHHHHHHHHHHHHCCEEEEEECCCC----CC---CCCCCHHHHHHHHHHHHcCCCCEEEecCCccH
Confidence            368999999999999999999999999999999998763    23   489999999999987 9999999887766678


Q ss_pred             HHHHhhcCccEEEecCCcCCCCCCCCCCChH-HHHHhC----CeEEEeCCC--CCCCHHHHHHHHHhch
Q 014487          335 KDMITTFNICLVVHGTVSETNTPLTGQSDPY-EVAKSM----GIFQLLESP--KSITTTSVAQRIIANH  396 (423)
Q Consensus       335 ~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~-~~~k~~----G~~~~i~~~--~~~Stt~Ii~RI~~~~  396 (423)
                      .++++.++++++++|-+... ++  +..... ...+.+    +.+..++.+  ..+|||.|.+||..+.
T Consensus        74 ~~~~~~~~~~~~~~gl~~w~-d~--e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~i~~g~  139 (159)
T PRK00168         74 VDFAREVGATVIVRGLRAVS-DF--EYEFQMAGMNRKLAPEIETVFLMPSPEYSFISSSLVKEVARLGG  139 (159)
T ss_pred             HHHHHHcCCCEEEecCcchh-hH--HHHHHHHHhCCCCCCCCcEEEEeCCCCcceecHHHHHHHHHcCC
Confidence            89999999999999943111 11  000000 011111    223333333  3699999999997654

>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional

Probab=99.58  E-value=9.9e-15  Score=145.31  Aligned_cols=128  Identities=18%  Similarity=0.305  Sum_probs=94.7

Q ss_pred             EEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhh--cccCeeEEc---CCCC
Q 014487          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC--RYVDEVIIG---APWE  332 (423)
Q Consensus       258 iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~--~~Vd~Vvi~---~p~~  332 (423)
                      +|++.|+||+||.||+.+|++|+++||+|||||++|+.++++|.  +| .|+++|+.+|+++  ++++.+.+.   +|+.
T Consensus         2 ~V~vgGTFD~lH~GH~~lL~~A~~~gd~LiVgvt~D~~~~~~k~--~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~G   78 (322)
T PRK01170          2 ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKV--YP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYG   78 (322)
T ss_pred             EEEEccccccCChHHHHHHHHHHHcCCEEEEEEccHHHHHhcCC--CC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCC
Confidence            69999999999999999999999999999999999999987663  68 9999999999995  777765553   4444


Q ss_pred             chHHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCe----EEEeCC-----CCCCCHHHHHHHHHhch
Q 014487          333 VTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGI----FQLLES-----PKSITTTSVAQRIIANH  396 (423)
Q Consensus       333 ~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~----~~~i~~-----~~~~Stt~Ii~RI~~~~  396 (423)
                      +   .+..-+||++|-+++...+     +....+..+..|.    ++.++.     ...+|||.|++.-++.+
T Consensus        79 p---t~~~~~~d~IVVS~ET~~~-----~~~IN~~R~e~Gl~pleIv~I~~v~~~d~~~iSSTrIr~~eid~~  143 (322)
T PRK01170         79 N---TLYEEDYEIIVVSPETYQR-----ALKINEIRIKNGLPPLKIVRVPYVLAEDLFPISSTRIINGEIDGN  143 (322)
T ss_pred             C---CcccCCCCEEEEecccccc-----HHHHHHHHHHCCCCceEEEEEEeEEcCCCCcccHHHHhhhhcccc
Confidence            3   3456789999999875332     2222233445552    333322     23479999999765543

>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional

Probab=99.57  E-value=3.6e-14  Score=128.61  Aligned_cols=126  Identities=22%  Similarity=0.261  Sum_probs=87.7

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhc-CccccEEEecCCccccHHH
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYAITEQF  144 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~vi~~~p~~~~~ef  144 (423)
                      ++++++|+||++|.||+.++++|++.+|+|+|++..++    .| .++++.++|++|++. ++.++.+.+..--+++.++
T Consensus         2 ~igi~gGsFdP~H~GHl~~~~~a~~~~d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t~~~   76 (159)
T PRK00168          2 KIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINP----SK-KPLFSLEERVELIREATAHLPNVEVVSFDGLLVDF   76 (159)
T ss_pred             cEEEEeeecCCCCHHHHHHHHHHHHHCCEEEEEECCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEEecCCccHHHH
Confidence            57999999999999999999999999999999987754    24 579999999999997 7788877663211234455


Q ss_pred             HHHHHhhcCccEEEEcCC-CCCCCCCCcHHHHH--H-hC----CcEEEeccC--CCCCHHHHHHHHHhc
Q 014487          145 MNRLFNEHKIDYIIHGDD-PCLLPDGTDAYALA--K-KV----GRYKQIKRT--EGVSSTDIVGRILSS  203 (423)
Q Consensus       145 l~~ll~~~~~d~VV~G~D-~~~g~~g~~~~~~l--k-~~----g~~~~v~r~--~~iSST~Ir~rI~~~  203 (423)
                      +    +.+++++++.|-| |.   +++......  . ..    ..+..+...  ..||||.||+++..+
T Consensus        77 ~----~~~~~~~~~~gl~~w~---d~e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~i~~g  138 (159)
T PRK00168         77 A----REVGATVIVRGLRAVS---DFEYEFQMAGMNRKLAPEIETVFLMPSPEYSFISSSLVKEVARLG  138 (159)
T ss_pred             H----HHcCCCEEEecCcchh---hHHHHHHHHHhCCCCCCCCcEEEEeCCCCcceecHHHHHHHHHcC
Confidence            4    5678999999944 32   111111111  1 11    112222222  259999999999854

>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain

Probab=99.57  E-value=2.8e-14  Score=132.07  Aligned_cols=126  Identities=21%  Similarity=0.215  Sum_probs=93.4

Q ss_pred             ecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcC-ccccE---------EEecCCc--
Q 014487           71 DGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVDE---------VIANAPY--  138 (423)
Q Consensus        71 ~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~VD~---------vi~~~p~--  138 (423)
                      .-.|||+|.||..++++|.+.++.+.|.+.+.      + .+.++.++|++|++.. +....         .+....|  
T Consensus         5 ~~~~DPiH~GHl~i~~~a~~~~d~~~V~v~p~------~-~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~~~   77 (182)
T smart00764        5 VMNANPFTLGHRYLVEQAAAECDWVHLFVVSE------D-ASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATFPS   77 (182)
T ss_pred             EECCCCCCHHHHHHHHHHHHHCCceEEEEEeC------C-CCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccChh
Confidence            34799999999999999999998888777654      2 3577999999999852 22221         1111111  


Q ss_pred             cc--------------c-HHHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCC----cEEEecc----CCCCCHHH
Q 014487          139 AI--------------T-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKR----TEGVSSTD  195 (423)
Q Consensus       139 ~~--------------~-~efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g----~~~~v~r----~~~iSST~  195 (423)
                      -+              + ++|++.+.+++++..||+|+||+||.++.|+.+.|+..+    ++..+++    ...+|||.
T Consensus        78 ~~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~~~~G~~~~L~~~~~~g~~v~~I~r~~~~g~~iSST~  157 (182)
T smart00764       78 YFLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVTAIYNQTMKQTLLSPAIEVVEIERKKANGQPISAST  157 (182)
T ss_pred             hhcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCCCCccCHHHHHHHhhCCCEEEEEecccCCCcEECHHH
Confidence            01              0 378875557799999999999999999999999888763    3556666    23499999


Q ss_pred             HHHHHHhc
Q 014487          196 IVGRILSS  203 (423)
Q Consensus       196 Ir~rI~~~  203 (423)
                      ||+.|.++
T Consensus       158 IR~~L~~G  165 (182)
T smart00764      158 VRKLLKEG  165 (182)
T ss_pred             HHHHHHcC
Confidence            99999754

Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.

>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase

Probab=99.56  E-value=2.2e-14  Score=130.69  Aligned_cols=124  Identities=24%  Similarity=0.339  Sum_probs=85.2

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHh-cCcccc-EEEecCCccccHHH
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS-GLKWVD-EVIANAPYAITEQF  144 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~-~~~~VD-~vi~~~p~~~~~ef  144 (423)
                      |++++|+||++|.||++++++|.+.+|+|+|++.+++.  .+|..+.++.+||++|++ +++.++ ..+...|.. +.+.
T Consensus         1 rgl~~G~FdP~H~GHl~ii~~a~~~~D~lii~i~s~~~--~~k~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~~-d~~~   77 (165)
T TIGR01527         1 RGFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQE--SHTLENPFTAGERILMITQSLKEVGDLTYYIIPIE-DIER   77 (165)
T ss_pred             CeEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCCC--CCCCCCCCCHHHHHHHHHHHHhcCCCceEEEEecC-CccH
Confidence            47899999999999999999999999999999988774  334445567799999994 555553 311112211 1111


Q ss_pred             HHHHHhhc------CccEEEEcCCCCCCCCCCcHHHHHHhCC-cEEEec---cCCCCCHHHHHHHHHhc
Q 014487          145 MNRLFNEH------KIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIK---RTEGVSSTDIVGRILSS  203 (423)
Q Consensus       145 l~~ll~~~------~~d~VV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~---r~~~iSST~Ir~rI~~~  203 (423)
                       .+....+      ++|+|+.|+.+        ....+++.| ++..++   |+ ++|||+||++|+++
T Consensus        78 -~~~w~~~v~~~~p~~D~vf~~~~~--------~~~~f~e~g~~v~~~p~~~r~-~~S~T~IR~~i~~~  136 (165)
T TIGR01527        78 -NSIWVSYVESMTPPFDVVYSNNPL--------VRRLFKEAGYEVKRPPMFNRK-EYSGTEIRRRMLNG  136 (165)
T ss_pred             -HHHHHHHHHHhCCCCCEEEECCHH--------HHHHHHHcCCEEEECCCcCCC-cccHHHHHHHHHcC
Confidence             1112233      77999999543        244566666 455555   55 89999999999864

In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.

>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT)

Probab=99.53  E-value=9.9e-15  Score=128.81  Aligned_cols=126  Identities=29%  Similarity=0.433  Sum_probs=90.7

Q ss_pred             EEcCeeccCCHHHHHHHHHHHhcCCE-EEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCe--------------
Q 014487          260 YIDGAFDLFHAGHVEILKKARQLGDF-LLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDE--------------  324 (423)
Q Consensus       260 ~~~G~FDl~H~GHi~~L~~A~~~gd~-LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~--------------  324 (423)
                      +++|+|||+|.||+.+|++|++.+|. ++++|.+|....+  .. +++++.++|+.+++.+..++.              
T Consensus         1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k--~~-~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~~~   77 (157)
T PF01467_consen    1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHK--DK-KPIFSFEERLEMLRAAFKDDPNIEVDDWELEQDKK   77 (157)
T ss_dssp             EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHS--TT-SSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSSHH
T ss_pred             CeeeEcCcccHHHHHHHHHHHHhccccccccccccccccc--cc-cccCcHHHHHHHHHHHHhhcCCccccchhHHhHhh
Confidence            57899999999999999999999997 7888998876543  22 489999999999999887777              


Q ss_pred             --------eEEcCC-------CCchHHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCC-eEEEeCCCCCCCHHHH
Q 014487          325 --------VIIGAP-------WEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMG-IFQLLESPKSITTTSV  388 (423)
Q Consensus       325 --------Vvi~~p-------~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G-~~~~i~~~~~~Stt~I  388 (423)
                              ++++++       |....++++.+++.++.++.++.....   ..+.+......+ .+........+|||.|
T Consensus        78 ~~~~~~~~~v~g~D~~~~~~~~~~~~~~~~~~~~~v~~r~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~iSST~I  154 (157)
T PF01467_consen   78 KYPDVKIYFVIGADNLRNFPKWRDWQEILKEVNIIVVSRGGDDPIETI---SDDEILEKYPLGIIFILDPPRNEISSTEI  154 (157)
T ss_dssp             HSTSSCEEEEEECTHHEEEEESTTHHHHHHHHHEEEEEHHHTTTHEEE---EHCHHHHHTTCEEEEEEEGGGTTSSHHHH
T ss_pred             hccccccceeccCCceeeecCCCcHHHHHHhCCEEEEEcCCCCccchh---hhccccccccceeEEEecCCCCccCHHHH
Confidence                    788877       666778999999999999865432211   112222222333 3344455567999999


Q ss_pred             HHH
Q 014487          389 AQR  391 (423)
Q Consensus       389 i~R  391 (423)
                      .+|
T Consensus       155 R~~  157 (157)
T PF01467_consen  155 RER  157 (157)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            987

Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....

>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]

Probab=99.53  E-value=3.5e-14  Score=126.01  Aligned_cols=89  Identities=21%  Similarity=0.356  Sum_probs=78.0

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh-hcccCeeEEcCCCCch
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVT  334 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~-~~~Vd~Vvi~~p~~~~  334 (423)
                      +++++++|+|||+|.||++++++|.+++|.|||+|..+.    .|   +|+++++||..+++. .+..++|-+....++.
T Consensus         2 ~~iavypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~np----~K---~plFsleER~~l~~~~~~~l~nV~V~~f~~Ll   74 (159)
T COG0669           2 MKIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAINP----SK---KPLFSLEERVELIREATKHLPNVEVVGFSGLL   74 (159)
T ss_pred             CeeEEeCCCCCCCccchHHHHHHHHHhccEEEEEEEeCC----Cc---CCCcCHHHHHHHHHHHhcCCCceEEEecccHH
Confidence            588999999999999999999999999999999999664    34   699999999977755 4677777776666789


Q ss_pred             HHHHhhcCccEEEecCC
Q 014487          335 KDMITTFNICLVVHGTV  351 (423)
Q Consensus       335 ~~~i~~~~~d~vv~G~d  351 (423)
                      .++.++.++.++|||=.
T Consensus        75 vd~ak~~~a~~ivRGLR   91 (159)
T COG0669          75 VDYAKKLGATVLVRGLR   91 (159)
T ss_pred             HHHHHHcCCCEEEEecc
Confidence            99999999999999954

>cd02169 Citrate_lyase_ligase Citrate lyase ligase

Probab=99.52  E-value=1.7e-13  Score=135.94  Aligned_cols=130  Identities=18%  Similarity=0.194  Sum_probs=96.1

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcC-cc---------ccEEEe
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KW---------VDEVIA  134 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~---------VD~vi~  134 (423)
                      .+.+.+.|+|||+|.||..++++|.+.++.++|.+.+.      + ++.++.++|++|++.. +.         -|.++.
T Consensus       114 ~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~~------~-~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~l~v~  186 (297)
T cd02169         114 KKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVSE------D-KSLFSFADRFKLVKKGTKHLKNVTVHSGGDYIIS  186 (297)
T ss_pred             CceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEcC------C-CCCCCHHHHHHHHHHHhCCCCCEEEEecCCeeec
Confidence            57889999999999999999999999999888877652      2 5688999999999842 11         122222


Q ss_pred             cCCcc----------------cc-HHHHHHHH-hhcCccEEEEcCCCCCCCCCCcHHHHHHhCCc-----EEEecc----
Q 014487          135 NAPYA----------------IT-EQFMNRLF-NEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR-----YKQIKR----  187 (423)
Q Consensus       135 ~~p~~----------------~~-~efl~~ll-~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g~-----~~~v~r----  187 (423)
                      ...|.                ++ ++|++ ++ +++++..||+|+||+||.++.++..+++. |+     +..++.    
T Consensus       187 ~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~-iL~~~l~~~~ivvG~Df~FG~~r~G~~~l~~~-~~~~gf~v~~v~~~~~~  264 (297)
T cd02169         187 SATFPSYFIKEQDVVIKAQTALDARIFRK-YIAPALNITKRYVGEEPFSRVTAIYNQTMQEE-LLSPAIEVIEIERKKYD  264 (297)
T ss_pred             cccChhhhcCChhHHHHHHhcCCHHHHHH-HHHHHcCCcEEEEcCCCCCCCcchhHHHHHHh-cccCCCEEEEecccccC
Confidence            11110                00 38887 66 56999999999999999999998555555 43     344443    


Q ss_pred             CCCCCHHHHHHHHHhc
Q 014487          188 TEGVSSTDIVGRILSS  203 (423)
Q Consensus       188 ~~~iSST~Ir~rI~~~  203 (423)
                      ...||||.||+.|.++
T Consensus       265 g~~ISST~IR~~l~~G  280 (297)
T cd02169         265 GQPISASTVRQLLKEG  280 (297)
T ss_pred             CcEEcHHHHHHHHHcC
Confidence            2349999999999876

Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.

>cd02163 PPAT Phosphopantetheine adenylyltransferase

Probab=99.51  E-value=1.1e-13  Score=124.71  Aligned_cols=129  Identities=18%  Similarity=0.246  Sum_probs=95.2

Q ss_pred             EEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh-hcccCeeEEcCCCCchHH
Q 014487          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVTKD  336 (423)
Q Consensus       258 iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~-~~~Vd~Vvi~~p~~~~~~  336 (423)
                      +++++|+|||+|.||+.++++|++.+|.|+|+++++.    .|   .|.++.++|+.+++. ++.++.+.+.+-.+.+.+
T Consensus         1 i~i~gGsFdP~H~GHl~l~~~a~~~~d~v~v~~~~~~----~k---~~~~~~~~R~~ml~~a~~~~~~~~v~~~es~t~~   73 (153)
T cd02163           1 IAVYPGSFDPITNGHLDIIERASKLFDEVIVAVAVNP----SK---KPLFSLEERVELIREATKHLPNVEVDGFDGLLVD   73 (153)
T ss_pred             CEEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC---CCCCCHHHHHHHHHHHHcCCCCEEecCCcchHHH
Confidence            4789999999999999999999999999999998763    24   478999999999876 799999988775567889


Q ss_pred             HHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhC-----CeEEEeCCCC--CCCHHHHHHHHHhch
Q 014487          337 MITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSM-----GIFQLLESPK--SITTTSVAQRIIANH  396 (423)
Q Consensus       337 ~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~-----G~~~~i~~~~--~~Stt~Ii~RI~~~~  396 (423)
                      +++.++.+++++|.|...+ +  +...........     ..+..++.+.  ++|||.|.+|+..+.
T Consensus        74 ~l~~l~~~~~i~G~d~~~~-~--e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~~~~g~  137 (153)
T cd02163          74 FARKHGANVIVRGLRAVSD-F--EYEFQMAGMNRKLAPEIETVFLMASPEYSFISSSLVKEIARFGG  137 (153)
T ss_pred             HHHHcCCCEEEECCcchhh-H--HHHHHHHHhCCCCCCCCcEEEEeCCCccceecHHHHHHHHHcCC
Confidence            9999999999999553221 1  110011111111     2233334332  599999999998654

Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.

>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain

Probab=99.49  E-value=1.3e-13  Score=120.66  Aligned_cols=129  Identities=20%  Similarity=0.142  Sum_probs=91.7

Q ss_pred             EEEEcCeeccCCHHHHHHHHHHHhcC-CEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcc-cCeeEEcCCCCc--
Q 014487          258 VVYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRY-VDEVIIGAPWEV--  333 (423)
Q Consensus       258 iv~~~G~FDl~H~GHi~~L~~A~~~g-d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~-Vd~Vvi~~p~~~--  333 (423)
                      ++++.|+||++|.||+.+|++|++++ |.++|++.++..... +  +.++++.++|+.+++++.. +|.|++.+....  
T Consensus         1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~-~--~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~   77 (143)
T cd02039           1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKK-R--NKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKI   77 (143)
T ss_pred             CeEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhc-c--cccCCCHHHHHHHHHHhccCCcEEEEEecChhhc
Confidence            57899999999999999999999999 999999999875432 1  2589999999999999986 787777442211  


Q ss_pred             ------hHHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCC-eEEEeCCC---CCCCHHHHHHH
Q 014487          334 ------TKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMG-IFQLLESP---KSITTTSVAQR  391 (423)
Q Consensus       334 ------~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G-~~~~i~~~---~~~Stt~Ii~R  391 (423)
                            ....+..+++++++.|.|+...-. .+.. ........+ .++.+++.   ..+|||.|.+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~v~G~d~~~~~~-~~~~-~~~~~~~~~~~vv~~~~~~~~~~iSSt~IR~~  143 (143)
T cd02039          78 LLAVVFILKILLKVGPDKVVVGEDFAFGKN-ASYN-KDLKELFLDIEIVEVPRVRDGKKISSTLIREL  143 (143)
T ss_pred             cCHHHHHHHHHHHcCCcEEEECCccccCCc-hhhh-HHHHHhCCceEEEeeEecCCCcEEehHHhhcC
Confidence                  113566789999999999865421 1221 111111223 34445554   57899999764

Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.

>PLN02388 phosphopantetheine adenylyltransferase

Probab=99.49  E-value=2.9e-14  Score=130.88  Aligned_cols=134  Identities=19%  Similarity=0.230  Sum_probs=89.8

Q ss_pred             CCCeEEEEecccCcCcHHHHHHHHHHHHhc-CeeEEEEecchhhhccC-CCCCCcHHHHHHHHhcCc----c---ccEEE
Q 014487           63 KKRVRVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANK-GPPVLSMEERLALVSGLK----W---VDEVI  133 (423)
Q Consensus        63 ~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K-~~pi~t~eER~~~l~~~~----~---VD~vi  133 (423)
                      .....|+++|+||++|.||+.||++|.+++ +.++||+++++.....+ ...+.+.++|.+.++..-    .   ++.+-
T Consensus        17 ~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~~~p~~~~~i~~   96 (177)
T PLN02388         17 NSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIKSIKPELVVQAEP   96 (177)
T ss_pred             CcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcccCCCcccCCHHHHHHHHHHHHHHcCCCceEEEEE
Confidence            345689999999999999999999999998 47999999999753322 257999999999998621    1   12222


Q ss_pred             ecCCccccHHHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCC--c--EEEec---c---CCCCCHHHHHHHHHhc
Q 014487          134 ANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG--R--YKQIK---R---TEGVSSTDIVGRILSS  203 (423)
Q Consensus       134 ~~~p~~~~~efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g--~--~~~v~---r---~~~iSST~Ir~rI~~~  203 (423)
                      +..||..+..       .-+.|++|++..-..|...-+....  +.|  .  +..++   .   ...||||+||+++.+.
T Consensus        97 i~D~~Gpt~~-------~~~~d~LVVS~ET~~g~~~IN~~R~--e~Gl~pL~i~~v~~v~~~~~~~kiSST~iR~~~~~~  167 (177)
T PLN02388         97 IIDPYGPSIV-------DENLEAIVVSKETLPGGLSVNKKRA--ERGLSQLKIEVVDIVPEESTGNKLSSTTLRRLEAEK  167 (177)
T ss_pred             ecCCCCCccc-------CCCCCEEEEcHhHhhhHHHHHHHHH--HCCCCCeEEEEEEeEecCCCCCccCHHHHHHHHHHH
Confidence            3455543321       2367899999886555333222221  233  1  22221   1   2359999999999876


Q ss_pred             cc
Q 014487          204 ME  205 (423)
Q Consensus       204 ~~  205 (423)
                      .+
T Consensus       168 ~~  169 (177)
T PLN02388        168 AV  169 (177)
T ss_pred             HH
Confidence            54

>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal

Probab=99.48  E-value=4.1e-13  Score=122.23  Aligned_cols=126  Identities=21%  Similarity=0.261  Sum_probs=85.2

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHh-cCcccc------EEEecCCcc
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS-GLKWVD------EVIANAPYA  139 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~-~~~~VD------~vi~~~p~~  139 (423)
                      +++++|+||++|.||.+++++|.+.+|+|+|++.++...  .+....++.+||++|++ .+...|      .++....+.
T Consensus         1 ~~v~~G~FdP~H~GHl~~i~~a~~~~d~l~v~v~s~~~~--~~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d~~   78 (163)
T cd02166           1 RALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSAQES--HTLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPDIE   78 (163)
T ss_pred             CeEEeeccCCCCHHHHHHHHHHHHHCCEEEEEecCCCCC--CCCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCCCC
Confidence            368999999999999999999999999999999776532  23345578899999999 445554      333321122


Q ss_pred             ccHHHHHHHHhhc-CccEEEEcCCCCCCCCCCcHHHHHHhCC-cEEEeccC--CCCCHHHHHHHHHh
Q 014487          140 ITEQFMNRLFNEH-KIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKRT--EGVSSTDIVGRILS  202 (423)
Q Consensus       140 ~~~efl~~ll~~~-~~d~VV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~r~--~~iSST~Ir~rI~~  202 (423)
                      ....+...+.... ++|+++.|++|.        ...+++.| .+..++++  +++|+|.||++|.+
T Consensus        79 ~~~~w~~~v~~~vp~~div~~g~~~~--------~~~f~~~g~~v~~~p~~~~~~~s~t~iR~~~~~  137 (163)
T cd02166          79 RNSLWVSYVESLTPPFDVVYSGNPLV--------ARLFKEAGYEVRRPPMFNREEYSGTEIRRLMLG  137 (163)
T ss_pred             chHHHHHHHHHHCCCCCEEEECchHH--------HHhhhhcCCeEecCCcccCCCCCHHHHHHHHHc
Confidence            2333433322222 478999997642        12333444 45567763  47999999999874

This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.

>cd02163 PPAT Phosphopantetheine adenylyltransferase

Probab=99.48  E-value=2.1e-13  Score=122.89  Aligned_cols=123  Identities=22%  Similarity=0.313  Sum_probs=84.9

Q ss_pred             EEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhc-CccccEEEecCCc-cccHHHH
Q 014487           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPY-AITEQFM  145 (423)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~vi~~~p~-~~~~efl  145 (423)
                      ++++|+||++|.||..++++|.+.+|++++++.+++    .| .++++.++|++|++. ++.++.+.+ .++ +++.+++
T Consensus         2 ~i~gGsFdP~H~GHl~l~~~a~~~~d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~~~v-~~~es~t~~~l   75 (153)
T cd02163           2 AVYPGSFDPITNGHLDIIERASKLFDEVIVAVAVNP----SK-KPLFSLEERVELIREATKHLPNVEV-DGFDGLLVDFA   75 (153)
T ss_pred             EEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEe-cCCcchHHHHH
Confidence            689999999999999999999999999999998754    24 478999999999996 667777665 223 2444554


Q ss_pred             HHHHhhcCccEEEEcCC-CCCCCCCCcHHHHH--HhCC----cEEEeccCC---CCCHHHHHHHHHhc
Q 014487          146 NRLFNEHKIDYIIHGDD-PCLLPDGTDAYALA--KKVG----RYKQIKRTE---GVSSTDIVGRILSS  203 (423)
Q Consensus       146 ~~ll~~~~~d~VV~G~D-~~~g~~g~~~~~~l--k~~g----~~~~v~r~~---~iSST~Ir~rI~~~  203 (423)
                          +.++.+++++|-| |...   +.-....  ...+    ....+..+.   .+|||.||+++..+
T Consensus        76 ----~~l~~~~~i~G~d~~~~~---e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~~~~g  136 (153)
T cd02163          76 ----RKHGANVIVRGLRAVSDF---EYEFQMAGMNRKLAPEIETVFLMASPEYSFISSSLVKEIARFG  136 (153)
T ss_pred             ----HHcCCCEEEECCcchhhH---HHHHHHHHhCCCCCCCCcEEEEeCCCccceecHHHHHHHHHcC
Confidence                5678999999954 2111   1111111  1111    112222222   49999999999865

Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.

>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase

Probab=99.48  E-value=4e-13  Score=122.44  Aligned_cols=120  Identities=22%  Similarity=0.275  Sum_probs=86.7

Q ss_pred             EEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHH-HhhcccC-e---eEEcCCCCc
Q 014487          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVD-E---VIIGAPWEV  333 (423)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v-~~~~~Vd-~---Vvi~~p~~~  333 (423)
                      +++.|+|||||.||+.++++|++.||+|+|+|.+++.  .+|.. .|+ +.+||..++ ++++.++ .   +++.... .
T Consensus         2 gl~~G~FdP~H~GHl~ii~~a~~~~D~lii~i~s~~~--~~k~~-~p~-~~~eR~~mi~~al~~~~~~~~~~vP~~d~-~   76 (165)
T TIGR01527         2 GFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQE--SHTLE-NPF-TAGERILMITQSLKEVGDLTYYIIPIEDI-E   76 (165)
T ss_pred             eEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCCC--CCCCC-CCC-CHHHHHHHHHHHHhcCCCceEEEEecCCc-c
Confidence            6889999999999999999999999999999998875  33432 455 779999999 6778774 3   2222212 2


Q ss_pred             hHHHHhhc------CccEEEecCCcCCCCCCCCCCChHHHHHhCCeE-EEeC---CCCCCCHHHHHHHHHhc
Q 014487          334 TKDMITTF------NICLVVHGTVSETNTPLTGQSDPYEVAKSMGIF-QLLE---SPKSITTTSVAQRIIAN  395 (423)
Q Consensus       334 ~~~~i~~~------~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~-~~i~---~~~~~Stt~Ii~RI~~~  395 (423)
                      ..+.+.++      ++|+|+.|...           .....+..|.. ..++   ++ .+|+|.|.++|.++
T Consensus        77 ~~~~w~~~v~~~~p~~D~vf~~~~~-----------~~~~f~e~g~~v~~~p~~~r~-~~S~T~IR~~i~~~  136 (165)
T TIGR01527        77 RNSIWVSYVESMTPPFDVVYSNNPL-----------VRRLFKEAGYEVKRPPMFNRK-EYSGTEIRRRMLNG  136 (165)
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCHH-----------HHHHHHHcCCEEEECCCcCCC-cccHHHHHHHHHcC
Confidence            34456666      88999998421           12345566643 4444   54 89999999999875

In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.

>TIGR00125 cyt_tran_rel cytidyltransferase-related domain

Probab=99.48  E-value=9e-14  Score=106.88  Aligned_cols=65  Identities=43%  Similarity=0.719  Sum_probs=59.6

Q ss_pred             EEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCe
Q 014487          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDE  324 (423)
Q Consensus       258 iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~  324 (423)
                      ++++.|+||++|.||+.+|++|++++|.++|+|.+|+..+..|.  .|+++.++|..++++|.+++.
T Consensus         1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~~~vv~i~~~~~~~~~~~--~~~~~~~~R~~~~~~~~~~~~   65 (66)
T TIGR00125         1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKG--EPVFSLEERLEMLKALKYVDE   65 (66)
T ss_pred             CEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECchHhccccCC--CCCCCHHHHHHHHHHhccccC
Confidence            58999999999999999999999999999999999988877664  399999999999999998874

Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.

>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]

Probab=99.47  E-value=3.5e-13  Score=126.04  Aligned_cols=136  Identities=26%  Similarity=0.257  Sum_probs=101.3

Q ss_pred             CCeEEEEecccCcCcHHHHHHHHHHHHhc--CeeEEEEecchhhhccCC-CCCCcHHHHHHHHhc-CccccE------EE
Q 014487           64 KRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDE------VI  133 (423)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~-~~~VD~------vi  133 (423)
                      .+++++++|+|||+|.||+.++++|.+..  |.|++.++..+   +.|. +...+.++|++|++- ++....      .+
T Consensus         2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~---p~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~   78 (197)
T COG1057           2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVP---PHKKKKELASAEHRLAMLELAIEDNPRFEVSDREI   78 (197)
T ss_pred             CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCC---CCCCCccCCCHHHHHHHHHHHHhcCCCcceeHHHH
Confidence            46789999999999999999999999975  67777666654   3454 679999999999983 222222      23


Q ss_pred             ecCCccccHHHHHHHHhhcCcc---EEEEcCC-CCCCCCCCcHHHHHHhCCcEEEeccCC--------------------
Q 014487          134 ANAPYAITEQFMNRLFNEHKID---YIIHGDD-PCLLPDGTDAYALAKKVGRYKQIKRTE--------------------  189 (423)
Q Consensus       134 ~~~p~~~~~efl~~ll~~~~~d---~VV~G~D-~~~g~~g~~~~~~lk~~g~~~~v~r~~--------------------  189 (423)
                      ...+.++|.++++.+.+++++|   +.++|.| ....+.|.+ ++.+-+.+++..++|..                    
T Consensus        79 ~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~~W~~-~~ell~~~~~vv~~Rp~~~~~~~~~~~~~~~~~~~~~  157 (197)
T COG1057          79 KRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLPKWYD-WDELLKLVTFVVAPRPGYGELELSLLSSGGAIILLDL  157 (197)
T ss_pred             HcCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhhhhhh-HHHHHHhCCEEEEecCCchhhhhhhhcCCceEEEccC
Confidence            3445677788998887788898   5888888 455566765 55666666777666632                    


Q ss_pred             ---CCCHHHHHHHHHhc
Q 014487          190 ---GVSSTDIVGRILSS  203 (423)
Q Consensus       190 ---~iSST~Ir~rI~~~  203 (423)
                         .||||.||+++..+
T Consensus       158 ~~~~ISSt~IR~~~~~~  174 (197)
T COG1057         158 PRLDISSTEIRERIRRG  174 (197)
T ss_pred             ccccCchHHHHHHHhCC
Confidence               49999999999865

>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme

Probab=99.45  E-value=6.1e-13  Score=122.90  Aligned_cols=136  Identities=16%  Similarity=0.176  Sum_probs=94.8

Q ss_pred             EEEcCeeccCCHHHHHHHHHHHhcCC---EEEEEEecChhhhh---ccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCC-
Q 014487          259 VYIDGAFDLFHAGHVEILKKARQLGD---FLLVGIYTDQIVSE---HRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW-  331 (423)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd---~LiVgv~~D~~v~~---~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~-  331 (423)
                      |++-|+||++|.||..+|++|+++++   ...|.++-|.....   .+....|+++.++|+.+++++. ||.|++.+.. 
T Consensus         2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~-vd~v~~~~f~~   80 (180)
T cd02064           2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLG-VDYLLVLPFDK   80 (180)
T ss_pred             EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcC-CCEEEEeCCCH
Confidence            78999999999999999999999975   35666666654432   1223468999999999999998 9999985421 


Q ss_pred             ----CchHHHHhh----cCccEEEecCCcCCCCCCCCCC-C-hHHHHHhCC-eEEEeCC----CCCCCHHHHHHHHHhch
Q 014487          332 ----EVTKDMITT----FNICLVVHGTVSETNTPLTGQS-D-PYEVAKSMG-IFQLLES----PKSITTTSVAQRIIANH  396 (423)
Q Consensus       332 ----~~~~~~i~~----~~~d~vv~G~d~~~~~~~~~~~-d-~~~~~k~~G-~~~~i~~----~~~~Stt~Ii~RI~~~~  396 (423)
                          ..+.++++.    .+|+.+|.|.||...-- ..++ + .....+..| ....++.    ...+|||.|.+.|.+..
T Consensus        81 ~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~-~~g~~~~L~~~~~~~g~~v~~v~~~~~~~~~iSST~IR~~i~~G~  159 (180)
T cd02064          81 EFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKG-RSGDAELLKELGKKYGFEVTVVPPVTLDGERVSSTRIREALAEGD  159 (180)
T ss_pred             HHHcCCHHHHHHHHHhhcCCeEEEEccCCCCCCC-CCCCHHHHHHhhhhcCcEEEEeCcEecCCcEEcHHHHHHHHHhCC
Confidence                134555554    37999999999965421 1111 1 112334444 4556665    36799999998885543

FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.

>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional

Probab=99.44  E-value=1.8e-13  Score=136.40  Aligned_cols=125  Identities=25%  Similarity=0.379  Sum_probs=88.5

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcC--ccccEEEe---cCCcccc
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL--KWVDEVIA---NAPYAIT  141 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~--~~VD~vi~---~~p~~~~  141 (423)
                      +|++.|+||.+|.||..+|++|+++|+.|+|||++|+.+..+|..| .++++|.++++++  +.++.+..   ..||..+
T Consensus         2 ~V~vgGTFD~lH~GH~~lL~~A~~~gd~LiVgvt~D~~~~~~k~~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~Gpt   80 (322)
T PRK01170          2 ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKVYP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYGNT   80 (322)
T ss_pred             EEEEccccccCChHHHHHHHHHHHcCCEEEEEEccHHHHHhcCCCC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCCCC
Confidence            6999999999999999999999999999999999999887666667 9999999999984  44443322   3444322


Q ss_pred             HHHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCC----cEEEecc---CC--CCCHHHHHHHHH
Q 014487          142 EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKR---TE--GVSSTDIVGRIL  201 (423)
Q Consensus       142 ~efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g----~~~~v~r---~~--~iSST~Ir~rI~  201 (423)
                      .       ..-++|++|+|.+-..+.  ...-+..++.|    +++.++.   ..  .+|||+||+.-.
T Consensus        81 ~-------~~~~~d~IVVS~ET~~~~--~~IN~~R~e~Gl~pleIv~I~~v~~~d~~~iSSTrIr~~ei  140 (322)
T PRK01170         81 L-------YEEDYEIIVVSPETYQRA--LKINEIRIKNGLPPLKIVRVPYVLAEDLFPISSTRIINGEI  140 (322)
T ss_pred             c-------ccCCCCEEEEeccccccH--HHHHHHHHHCCCCceEEEEEEeEEcCCCCcccHHHHhhhhc
Confidence            1       134799999999865432  22222333444    2333333   22  389999997543

>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional

Probab=99.44  E-value=6.2e-13  Score=117.96  Aligned_cols=89  Identities=22%  Similarity=0.327  Sum_probs=74.2

Q ss_pred             eEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHH-hhcccCeeEEcCC-CCch
Q 014487          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAP-WEVT  334 (423)
Q Consensus       257 ~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~Vd~Vvi~~p-~~~~  334 (423)
                      ++++++|+|||+|.||++++++|.+++|+|+|++..+.    .|   .|+++.++|+.+++ +++..+.|.+... .+++
T Consensus         2 kiai~~GSFDPih~GHl~ii~~A~~~~D~v~v~v~~np----~K---~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l~   74 (140)
T PRK13964          2 KIAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSINP----DK---SNASDLDSRFKNVKNKLKDFKNVEVLINENKLT   74 (140)
T ss_pred             eEEEEeeeeCCCCHHHHHHHHHHHHhCCEEEEEeccCC----CC---CCCCCHHHHHHHHHHHHcCCCCcEEecCcCCcH
Confidence            68999999999999999999999999999999998763    34   37899999998884 4566666665432 4678


Q ss_pred             HHHHhhcCccEEEecCCc
Q 014487          335 KDMITTFNICLVVHGTVS  352 (423)
Q Consensus       335 ~~~i~~~~~d~vv~G~d~  352 (423)
                      .++.++.+.+++|+|=..
T Consensus        75 v~~~~~~~a~~ivrGlR~   92 (140)
T PRK13964         75 AEIAKKLGANFLIRSARN   92 (140)
T ss_pred             HHHHHHCCCeEEEEecCC
Confidence            899999999999999543

>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT)

Probab=99.44  E-value=1.6e-13  Score=121.14  Aligned_cols=62  Identities=40%  Similarity=0.535  Sum_probs=46.5

Q ss_pred             EEecccCcCcHHHHHHHHHHHHhcCe-eEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccE
Q 014487           69 YMDGCFDLMHYGHANALRQAKALGDE-LVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE  131 (423)
Q Consensus        69 ~~~G~FD~lH~GH~~lL~qA~~~~d~-LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~  131 (423)
                      +++|+||++|.||..+|++|++.++. +++++.++...... ++++++.++|++|++.+...+.
T Consensus         1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~-~~~~~~~~~R~~ml~~~~~~~~   63 (157)
T PF01467_consen    1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKD-KKPIFSFEERLEMLRAAFKDDP   63 (157)
T ss_dssp             EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHST-TSSSSTHHHHHHHHHHHHTTCT
T ss_pred             CeeeEcCcccHHHHHHHHHHHHhcccccccccccccccccc-ccccCcHHHHHHHHHHHHhhcC
Confidence            57999999999999999999999986 57777777654321 2489999999999997666555

Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....

>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial

Probab=99.43  E-value=1.6e-12  Score=117.41  Aligned_cols=119  Identities=22%  Similarity=0.266  Sum_probs=79.5

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCcccc----EEEecCCccccH
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVD----EVIANAPYAITE  142 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD----~vi~~~p~~~~~  142 (423)
                      +++++|+||++|.||+.++++|++.+|+|++++..+    +.| .+..+.++|++|++.+ ..|    .|....  +++.
T Consensus         1 i~l~gGsFdP~H~GHl~l~~~a~~~~d~v~~~~~~~----p~k-~~~~~~~~R~~m~~~a-~~~~~~~~v~~~e--~yt~   72 (155)
T TIGR01510         1 IALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKN----PSK-KPLFSLEERVELIKDA-TKHLPNVRVDVFD--GLLV   72 (155)
T ss_pred             CEEEEeecCCCcHHHHHHHHHHHHhCCEEEEEEcCC----CCC-CCCcCHHHHHHHHHHH-HhhCCCeEEcCcc--chHH
Confidence            378999999999999999999999999999998743    234 4788999999999975 233    222211  2344


Q ss_pred             HHHHHHHhhcCccEEEEcCC-CCCCCCCCcHHHHHHh--CC-------cEEEeccCC---CCCHHHHHHHHHhc
Q 014487          143 QFMNRLFNEHKIDYIIHGDD-PCLLPDGTDAYALAKK--VG-------RYKQIKRTE---GVSSTDIVGRILSS  203 (423)
Q Consensus       143 efl~~ll~~~~~d~VV~G~D-~~~g~~g~~~~~~lk~--~g-------~~~~v~r~~---~iSST~Ir~rI~~~  203 (423)
                      +++    +.++.++++.|-| |...   .   ..++.  ..       ..+.+....   .+|||.||+++..+
T Consensus        73 dt~----~~l~~~~~i~G~~~~~~~---~---~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g  136 (155)
T TIGR01510        73 DYA----KELGATFIVRGLRAATDF---E---YELQMALMNKHLAPEIETVFLMASPEYAFVSSSLVKEIASFG  136 (155)
T ss_pred             HHH----HHcCCCEEEecCcchhhH---H---HHHHHHhhCcccccCCcEEEEeCCcchhhccHHHHHHHHHcC
Confidence            554    4667899999944 2110   0   11110  01       112222222   69999999999865

This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.

>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial

Probab=99.42  E-value=3.8e-12  Score=114.90  Aligned_cols=129  Identities=19%  Similarity=0.280  Sum_probs=88.5

Q ss_pred             EEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhh-cccCeeEEcCCCCchHH
Q 014487          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGAPWEVTKD  336 (423)
Q Consensus       258 iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~-~~Vd~Vvi~~p~~~~~~  336 (423)
                      +++++|+|||+|.||+.++++|++.+|.|+++++.+    ..|   .+..+.++|+.+++.+ ..-+.+.+.+....+.+
T Consensus         1 i~l~gGsFdP~H~GHl~l~~~a~~~~d~v~~~~~~~----p~k---~~~~~~~~R~~m~~~a~~~~~~~~v~~~e~yt~d   73 (155)
T TIGR01510         1 IALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKN----PSK---KPLFSLEERVELIKDATKHLPNVRVDVFDGLLVD   73 (155)
T ss_pred             CEEEEeecCCCcHHHHHHHHHHHHhCCEEEEEEcCC----CCC---CCCcCHHHHHHHHHHHHhhCCCeEEcCccchHHH
Confidence            578999999999999999999999999999999744    334   3778999999888765 44455555444457889


Q ss_pred             HHhhcCccEEEecCCcCCCCCCCCCCChH-HHHH----hCCeEEEeCCC--CCCCHHHHHHHHHhch
Q 014487          337 MITTFNICLVVHGTVSETNTPLTGQSDPY-EVAK----SMGIFQLLESP--KSITTTSVAQRIIANH  396 (423)
Q Consensus       337 ~i~~~~~d~vv~G~d~~~~~~~~~~~d~~-~~~k----~~G~~~~i~~~--~~~Stt~Ii~RI~~~~  396 (423)
                      .++.+++++++.|-+...+ +  +....+ ...+    ....+..+..+  .++|||.|.+|+..+.
T Consensus        74 t~~~l~~~~~i~G~~~~~~-~--~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g~  137 (155)
T TIGR01510        74 YAKELGATFIVRGLRAATD-F--EYELQMALMNKHLAPEIETVFLMASPEYAFVSSSLVKEIASFGG  137 (155)
T ss_pred             HHHHcCCCEEEecCcchhh-H--HHHHHHHhhCcccccCCcEEEEeCCcchhhccHHHHHHHHHcCC
Confidence            9999999999999542111 1  000000 0000    01222222322  2799999999998764

This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.

>TIGR00125 cyt_tran_rel cytidyltransferase-related domain

Probab=99.42  E-value=3.8e-13  Score=103.36  Aligned_cols=64  Identities=52%  Similarity=0.768  Sum_probs=56.8

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCcccc
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVD  130 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD  130 (423)
                      +++++|+||++|.||+.++++|+++++.+++++.+++...+.|..++++.++|.++++.+.+++
T Consensus         1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   64 (66)
T TIGR00125         1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKYVD   64 (66)
T ss_pred             CEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECchHhccccCCCCCCCHHHHHHHHHHhcccc
Confidence            4799999999999999999999999999999999987766555459999999999999987665

Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.

>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=99.41  E-value=2.5e-12  Score=120.88  Aligned_cols=135  Identities=23%  Similarity=0.210  Sum_probs=89.9

Q ss_pred             CCeEEEEecccCcCcHHHHHHHHHHHHhc--CeeEEEEecchhhhccCC-CCCCcHHHHHHHHhc-CccccEEEe-----
Q 014487           64 KRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDEVIA-----  134 (423)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~-~~~VD~vi~-----  134 (423)
                      .+++++++|+|||+|.||+.++++|++..  +.+++.+++.+   ..|. +.+++.++|++|++. ++..+.+..     
T Consensus         3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~---~~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~   79 (203)
T PRK00071          3 MKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGP---PHKPQKPLAPLEHRLAMLELAIADNPRFSVSDIEL   79 (203)
T ss_pred             CcEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCC---CCCCCCCCCCHHHHHHHHHHHhcCCCceEEeHHHH
Confidence            35688999999999999999999999876  77888777665   2343 468899999999984 233333332     


Q ss_pred             -cCCccccHHHHHHHHhhcCcc---EEEEcCC-CCCCCCCCcHHHHHHhCCcEEEecc----------------------
Q 014487          135 -NAPYAITEQFMNRLFNEHKID---YIIHGDD-PCLLPDGTDAYALAKKVGRYKQIKR----------------------  187 (423)
Q Consensus       135 -~~p~~~~~efl~~ll~~~~~d---~VV~G~D-~~~g~~g~~~~~~lk~~g~~~~v~r----------------------  187 (423)
                       .....+|.+.++.+.+.+ |+   ++++|.| +.....|.+..+.++ ...+..++|                      
T Consensus        80 ~~~~~syT~~tl~~l~~~~-p~~~~~fiiG~D~l~~l~~W~~~~~i~~-~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~  157 (203)
T PRK00071         80 ERPGPSYTIDTLRELRARY-PDVELVFIIGADALAQLPRWKRWEEILD-LVHFVVVPRPGYPLEALALPALQQLLEAAGA  157 (203)
T ss_pred             hCCCCCCHHHHHHHHHHHC-CCCcEEEEEcHHHhhhcccccCHHHHHH-hCcEEEEeCCCCCccccchhHHHHhhccCCC
Confidence             123455667777765555 44   8899988 333344554322332 333333333                      


Q ss_pred             -------CCCCCHHHHHHHHHhc
Q 014487          188 -------TEGVSSTDIVGRILSS  203 (423)
Q Consensus       188 -------~~~iSST~Ir~rI~~~  203 (423)
                             ...||||+||+++.++
T Consensus       158 i~~~~~~~~~ISST~IR~~l~~g  180 (203)
T PRK00071        158 ITLLDVPLLAISSTAIRERIKEG  180 (203)
T ss_pred             EEEEeCCCCccCHHHHHHHHHcC
Confidence                   1249999999999854

>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=99.39  E-value=3.7e-12  Score=123.05  Aligned_cols=103  Identities=25%  Similarity=0.228  Sum_probs=72.6

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhc--CeeEEEEecchhhhccCCCCCCcHHHHHHHHhc-Ccc----------ccE
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKW----------VDE  131 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~----------VD~  131 (423)
                      +++++++|+||++|.||+.++++|.+..  |++++.+..++   ..| ....+.++|++|++. ++.          .|.
T Consensus        22 ~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~p---p~K-~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~~~   97 (243)
T PRK06973         22 RRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQP---WQK-ADVSAAEHRLAMTRAAAASLVLPGVTVRVATD   97 (243)
T ss_pred             ceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcC---CCC-CCCCCHHHHHHHHHHHHHhccCCCceEEEeHh
Confidence            4578999999999999999999999975  78888877654   344 567899999999973 111          112


Q ss_pred             EEecCCccccHHHHHHHHhhcCcc---EEEEcCC-CCCCCCCCc
Q 014487          132 VIANAPYAITEQFMNRLFNEHKID---YIIHGDD-PCLLPDGTD  171 (423)
Q Consensus       132 vi~~~p~~~~~efl~~ll~~~~~d---~VV~G~D-~~~g~~g~~  171 (423)
                      .+.....++|.+.++.+-++|.++   ++++|.| +.....|.+
T Consensus        98 Ei~~~g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~~l~~W~~  141 (243)
T PRK06973         98 EIEHAGPTYTVDTLARWRERIGPDASLALLIGADQLVRLDTWRD  141 (243)
T ss_pred             hhhCCCCCcHHHHHHHHHHHcCCCCCEEEEEchhhHhhcCCccc
Confidence            222233456678888777777455   7889988 333344443

>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase

Probab=99.38  E-value=2.9e-12  Score=119.38  Aligned_cols=132  Identities=23%  Similarity=0.223  Sum_probs=90.2

Q ss_pred             EEEecccCcCcHHHHHHHHHHHHhc--CeeEEEEecchhhhccCCCCCCcHHHHHHHHhcC-ccccEEEe------cCCc
Q 014487           68 VYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVDEVIA------NAPY  138 (423)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~VD~vi~------~~p~  138 (423)
                      ++++|+|||+|.||..++++|++.+  |++++.+..++   ..|+....+.++|++|++.+ .....+..      ....
T Consensus         2 ~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~---~~k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~~   78 (192)
T cd02165           2 ALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANP---PHKPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDGP   78 (192)
T ss_pred             eEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCC---CCCCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCCC
Confidence            6899999999999999999999998  88998876654   23445788999999999853 12222222      1224


Q ss_pred             cccHHHHHHHHhhcC-cc-EEEEcCC-CCCCCCCCcHHHHHHhCCcEEEeccC--------------------------C
Q 014487          139 AITEQFMNRLFNEHK-ID-YIIHGDD-PCLLPDGTDAYALAKKVGRYKQIKRT--------------------------E  189 (423)
Q Consensus       139 ~~~~efl~~ll~~~~-~d-~VV~G~D-~~~g~~g~~~~~~lk~~g~~~~v~r~--------------------------~  189 (423)
                      .+|.+.++.+.+.+. .+ ++++|.| +...+.|.+..+++ +...+..++|.                          .
T Consensus        79 ~~t~~tl~~l~~~~p~~~~~~liG~D~l~~~~~W~~~~~i~-~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (192)
T cd02165          79 SYTIDTLEELRERYPNAELYFIIGSDNLIRLPKWYDWEELL-SLVHLVVAPRPGYPIEDASLEKLLLPGGRIILLDNPLL  157 (192)
T ss_pred             CCHHHHHHHHHHhccCCCEEEEEcHHHhhhcccccCHHHHH-HhCcEEEEeCCCCCcccchhhhhccCCCcEEEecCCcc
Confidence            456677777666552 33 7888988 44445666543333 33444444441                          2


Q ss_pred             CCCHHHHHHHHHhc
Q 014487          190 GVSSTDIVGRILSS  203 (423)
Q Consensus       190 ~iSST~Ir~rI~~~  203 (423)
                      .||||.||+++.++
T Consensus       158 ~iSST~IR~~~~~g  171 (192)
T cd02165         158 NISSTEIRERLKNG  171 (192)
T ss_pred             ccCHHHHHHHHHcC
Confidence            49999999999855

Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.

>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes

Probab=99.36  E-value=1.3e-12  Score=116.56  Aligned_cols=121  Identities=27%  Similarity=0.330  Sum_probs=79.4

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhc-CeeEEEEecchhhhccCC--CCCCcHHHHHHHHhcCc-c----cc--EEEecC
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLK-W----VD--EVIANA  136 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~~-~----VD--~vi~~~  136 (423)
                      +|+++|+||++|.||+.+|++|.+++ +.+++|+++|+... .|.  .++++.++|+++++.+- .    +.  .+-...
T Consensus         1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~-~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d   79 (143)
T cd02164           1 KVAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLK-NKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDD   79 (143)
T ss_pred             CEEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhcc-cCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccC
Confidence            48899999999999999999999998 78999999998443 343  36899999999998631 0    11  122244


Q ss_pred             CccccHHHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHH-hCC----cEEEecc------CCCCCHHHHHH
Q 014487          137 PYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK-KVG----RYKQIKR------TEGVSSTDIVG  198 (423)
Q Consensus       137 p~~~~~efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk-~~g----~~~~v~r------~~~iSST~Ir~  198 (423)
                      ||..+..       .-..|++|+...-..|.   ...+..+ +.|    +++.++.      ...||||.||+
T Consensus        80 ~~Gpt~~-------~~~~d~lVVS~ET~~~~---~~iN~~R~~~gl~pl~i~~v~~v~~~~~~~kiSST~iR~  142 (143)
T cd02164          80 PYGPTGT-------DPDLEAIVVSPETYPGA---LKINRKREENGLSPLEIVVVPLVKADEDGEKISSTRIRR  142 (143)
T ss_pred             CCCCccc-------CCCCCEEEEcHHHhhhH---HHHHHHHHHCCCCceeEEEEEeeccCCCCCeecchhhhC
Confidence            5543321       12578899887644332   2233333 333    1333332      23499999995

The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.

>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase

Probab=99.33  E-value=1.4e-11  Score=115.05  Aligned_cols=131  Identities=23%  Similarity=0.246  Sum_probs=85.2

Q ss_pred             EEecccCcCcHHHHHHHHHHHHhc--CeeEEEEecchhhhccCC-CCCCcHHHHHHHHhc-CccccEEEe------cCCc
Q 014487           69 YMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDEVIA------NAPY  138 (423)
Q Consensus        69 ~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~-~~~VD~vi~------~~p~  138 (423)
                      +++|+|||+|.||+.++++|.+..  |++++.+...+   +.|. +...+.++|++|++. +...+.+..      ....
T Consensus         1 i~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~---p~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~   77 (193)
T TIGR00482         1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANP---PHKKTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGP   77 (193)
T ss_pred             CccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCC---CCCCCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCC
Confidence            368999999999999999999985  67887777665   3343 345799999999983 333333222      1223


Q ss_pred             cccHHHHHHHHhhcC-cc-EEEEcCC-CCCCCCCCcHHHHHHhCCcEEEeccC---------------------------
Q 014487          139 AITEQFMNRLFNEHK-ID-YIIHGDD-PCLLPDGTDAYALAKKVGRYKQIKRT---------------------------  188 (423)
Q Consensus       139 ~~~~efl~~ll~~~~-~d-~VV~G~D-~~~g~~g~~~~~~lk~~g~~~~v~r~---------------------------  188 (423)
                      ++|.+.++.+-+++. .+ ++++|.| +.....|.+..++++ ...+..++|.                           
T Consensus        78 syT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~-~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~i~~~~~~  156 (193)
T TIGR00482        78 SYTIDTLKHLKKKYPDVELYFIIGADALRSFPLWKDWQELLE-LVHLVIVPRPGYTLDKALLEKAILRMHHGNLTLLHNP  156 (193)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEEcHHHhhhhccccCHHHHHH-hCcEEEEeCCCCCcchhhhHHHHhcccCCcEEEEcCC
Confidence            456677877766652 23 7888988 333345554333333 2333333331                           


Q ss_pred             -CCCCHHHHHHHHHhc
Q 014487          189 -EGVSSTDIVGRILSS  203 (423)
Q Consensus       189 -~~iSST~Ir~rI~~~  203 (423)
                       ..||||+||+++.++
T Consensus       157 ~~~iSST~IR~~l~~g  172 (193)
T TIGR00482       157 RVPISSTEIRQRIRQG  172 (193)
T ss_pred             ccccCHHHHHHHHHcC
Confidence             259999999999854

This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.

>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal

Probab=99.33  E-value=1.1e-11  Score=112.99  Aligned_cols=120  Identities=19%  Similarity=0.209  Sum_probs=83.0

Q ss_pred             EEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHH-hhcccC----eeEE--cCCC
Q 014487          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVD----EVII--GAPW  331 (423)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~Vd----~Vvi--~~p~  331 (423)
                      +++.|+|||||.||+.++++|.+.+|+|+|+|.++....  +.  .+-++.+||+.+++ +++.+|    .|.+  .+..
T Consensus         2 ~v~~G~FdP~H~GHl~~i~~a~~~~d~l~v~v~s~~~~~--~~--~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d~   77 (163)
T cd02166           2 ALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSAQESH--TL--ENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPDI   77 (163)
T ss_pred             eEEeeccCCCCHHHHHHHHHHHHHCCEEEEEecCCCCCC--CC--CCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCCC
Confidence            689999999999999999999999999999998775432  22  23358899999998 678875    3333  2222


Q ss_pred             CchHHHHhhc------CccEEEecCCcCCCCCCCCCCChHHHHHhCC-eEEEeCC--CCCCCHHHHHHHHHh
Q 014487          332 EVTKDMITTF------NICLVVHGTVSETNTPLTGQSDPYEVAKSMG-IFQLLES--PKSITTTSVAQRIIA  394 (423)
Q Consensus       332 ~~~~~~i~~~------~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G-~~~~i~~--~~~~Stt~Ii~RI~~  394 (423)
                      . ..+.+.++      +.|+++.|.+|...           .....| .+..++.  .+++|+|.|.+.|..
T Consensus        78 ~-~~~~w~~~v~~~vp~~div~~g~~~~~~-----------~f~~~g~~v~~~p~~~~~~~s~t~iR~~~~~  137 (163)
T cd02166          78 E-RNSLWVSYVESLTPPFDVVYSGNPLVAR-----------LFKEAGYEVRRPPMFNREEYSGTEIRRLMLG  137 (163)
T ss_pred             C-chHHHHHHHHHHCCCCCEEEECchHHHH-----------hhhhcCCeEecCCcccCCCCCHHHHHHHHHc
Confidence            2 23444444      67988888643221           122344 3345665  347999999999864

This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.

>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed

Probab=99.33  E-value=3e-11  Score=120.41  Aligned_cols=136  Identities=19%  Similarity=0.187  Sum_probs=96.1

Q ss_pred             EEEEcCeeccCCHHHHHHHHHHHhcCCEE---EEEEecChhhhhc---cCCCCCCCCHHHHHHHHHhhcccCeeEEcCCC
Q 014487          258 VVYIDGAFDLFHAGHVEILKKARQLGDFL---LVGIYTDQIVSEH---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPW  331 (423)
Q Consensus       258 iv~~~G~FDl~H~GHi~~L~~A~~~gd~L---iVgv~~D~~v~~~---Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~  331 (423)
                      .+++-|+||.+|.||..+|++|+++++.+   .+.++-|...+..   +...+++++.+||...+++|. ||.+++.+..
T Consensus        15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~g-VD~~~~~~F~   93 (305)
T PRK05627         15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELG-VDYVLVLPFD   93 (305)
T ss_pred             EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcC-CCEEEEecCC
Confidence            79999999999999999999999998765   3466666544332   222478999999999999998 9999884321


Q ss_pred             -----CchHHHHhh-----cCccEEEecCCcCCCCCCCCCCChHH---HHHhCC-eEEEeCC----CCCCCHHHHHHHHH
Q 014487          332 -----EVTKDMITT-----FNICLVVHGTVSETNTPLTGQSDPYE---VAKSMG-IFQLLES----PKSITTTSVAQRII  393 (423)
Q Consensus       332 -----~~~~~~i~~-----~~~d~vv~G~d~~~~~~~~~~~d~~~---~~k~~G-~~~~i~~----~~~~Stt~Ii~RI~  393 (423)
                           ..++++++.     ++++.+|.|.||.-..-  ..-+...   ..+..| ....++.    ...+|||.|.+.|.
T Consensus        94 ~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~--~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISST~IR~~I~  171 (305)
T PRK05627         94 EEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGKK--RAGDFELLKEAGKEFGFEVTIVPEVKEDGERVSSTAIRQALA  171 (305)
T ss_pred             HHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCCC--CCCCHHHHHHHHHHcCcEEEEeccEecCCCcCchHHHHHHHH
Confidence                 135567654     89999999999965421  1112211   222234 4455543    36799999998886


Q ss_pred             hch
Q 014487          394 ANH  396 (423)
Q Consensus       394 ~~~  396 (423)
                      ...
T Consensus       172 ~G~  174 (305)
T PRK05627        172 EGD  174 (305)
T ss_pred             cCC
Confidence            544

>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=99.31  E-value=1.4e-11  Score=113.47  Aligned_cols=132  Identities=16%  Similarity=0.091  Sum_probs=87.7

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcC-ccc--cEEEe--------
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWV--DEVIA--------  134 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~V--D~vi~--------  134 (423)
                      ++++++|+|||+|.||+.+++++ ...|++++.+....   +.+ ++..+.++|++|++.+ ...  ..+..        
T Consensus         3 ~i~ifGGSFDP~H~GHl~ia~~~-~~~d~v~~vP~~~~---~~~-k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~~~~   77 (174)
T PRK08887          3 KIAVFGSAFNPPSLGHKSVIESL-SHFDLVLLVPSIAH---AWG-KTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQELY   77 (174)
T ss_pred             eEEEeCCCCCCCCHHHHHHHHHh-hcCCEEEEEECCCC---ccc-CCCCCHHHHHHHHHHHHhccCCCceEEehHHhhhc
Confidence            57899999999999999999996 45688888765521   122 3677999999999842 111  12221        


Q ss_pred             -cCCccccHHHHHHHHhhcC-cc-EEEEcCC-CCCCCCCCcHHHHHHhCCcEEEeccCCCCCHHHHHHHHHhc
Q 014487          135 -NAPYAITEQFMNRLFNEHK-ID-YIIHGDD-PCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (423)
Q Consensus       135 -~~p~~~~~efl~~ll~~~~-~d-~VV~G~D-~~~g~~g~~~~~~lk~~g~~~~v~r~~~iSST~Ir~rI~~~  203 (423)
                       +.+..+|.++++.+.+++. .+ ++++|.| +.....|.+ ++.+.+...+...++...||||.||+++..+
T Consensus        78 ~~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~-~~~i~~~~~l~~~~~~~~ISST~IR~~l~~g  149 (174)
T PRK08887         78 APDESVTTYALLTRLQELYPEADLTFVIGPDNFLKFAKFYK-ADEITQRWTVMACPEKVPIRSTDIRNALQNG  149 (174)
T ss_pred             cCCCCcchHHHHHHHHHHCCCCeEEEEEccchHHHHHHhCC-HHHHHhhCeEEEeCCCCCcCHHHHHHHHHcC
Confidence             0222346677777666552 22 5777887 333334444 4444455567677776789999999999854

>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain

Probab=99.28  E-value=7.4e-12  Score=115.91  Aligned_cols=129  Identities=15%  Similarity=0.122  Sum_probs=82.5

Q ss_pred             EEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcC-cc--cc--EEEe-cCC-ccc
Q 014487           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KW--VD--EVIA-NAP-YAI  140 (423)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~--VD--~vi~-~~p-~~~  140 (423)
                      ++++|+||++|.||+.++++|.+.+++|+|++.+.+.. +.+ ++.++.+||++|++.+ ..  +|  .+.. ..| +.+
T Consensus         2 ~l~~GrF~P~H~GHl~~i~~a~~~~~~vii~i~s~~~~-~~~-~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~~~   79 (181)
T cd02168           2 LVYIGRFQPFHNGHLAVVLIALEKAKKVIILIGSARTA-RNI-KNPWTSEEREVMIEAALSDAGADLARVHFRPLRDHLY   79 (181)
T ss_pred             eEEeeccCCCCHHHHHHHHHHHHHCCeEEEEeCCCCCC-CCC-CCCcCHHHHHHHHHHHHhccCCCcceEEEEecCCCCC
Confidence            58999999999999999999999999999999876532 122 3568999999999873 21  11  2222 111 111


Q ss_pred             -cHHHH---HHHHh---hcCccEEEEcCCCCCCCCCCcHHH-HHHhCCcEEEeccCCCCCHHHHHHHHHhc
Q 014487          141 -TEQFM---NRLFN---EHKIDYIIHGDDPCLLPDGTDAYA-LAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (423)
Q Consensus       141 -~~efl---~~ll~---~~~~d~VV~G~D~~~g~~g~~~~~-~lk~~g~~~~v~r~~~iSST~Ir~rI~~~  203 (423)
                       +.-+.   +..+.   .-+++++++|.|+...    ..+. ...+. .+..++..+.+|||.||++|..+
T Consensus        80 ~~~~W~~~v~~~v~~~~~~~~~i~~~g~~kd~~----~~~~~lfpe~-~~~~~p~~~~iSsT~IR~~i~~~  145 (181)
T cd02168          80 SDNLWLAEVQQQVLEIAGGSASVGLVGHRKDAS----SYYLRSFPQW-DYLEVPNYPDLNATDIRRAYFEG  145 (181)
T ss_pred             ChHHHHHHHHHhChHhhCCCCcEEEeCCccCCC----ccceeecCCc-CeecCccccccCHHHHHHHHHhc
Confidence             22222   22211   2366889999876321    1111 11222 23455666789999999999863

N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.

>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional

Probab=99.26  E-value=8.4e-11  Score=108.22  Aligned_cols=127  Identities=20%  Similarity=0.318  Sum_probs=82.7

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcC-c--cc--cEE-EecCC-cc
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-K--WV--DEV-IANAP-YA  139 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~--~V--D~v-i~~~p-~~  139 (423)
                      +++++|.||++|.||+.++++|.+.+|+|+|++.+...  ..+....++.+||++|++.. .  .+  +.+ +...| ..
T Consensus         2 ~gl~~G~F~P~H~GHl~~i~~a~~~~d~v~v~i~s~~~--~~~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D~~   79 (174)
T PRK01153          2 RALFIGRFQPFHKGHLEVIKWILEEVDELIIGIGSAQE--SHTLKNPFTAGERILMIRKALEEEGIDLSRYYIIPIPDIE   79 (174)
T ss_pred             EEEEeeccCCCCHHHHHHHHHHHHhCCEEEEEecCCCC--CCCCCCCCCHHHHHHHHHHHHhcCCCCcceeeEecCCCcc
Confidence            68999999999999999999999999999998865432  12334457899999999842 1  12  122 22112 22


Q ss_pred             ccHHHHHHHHhh-cCccEEEEcCCCCCCCCCCcHHHHHHhCC-cEEEec--cCCCCCHHHHHHHHHhc
Q 014487          140 ITEQFMNRLFNE-HKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIK--RTEGVSSTDIVGRILSS  203 (423)
Q Consensus       140 ~~~efl~~ll~~-~~~d~VV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~--r~~~iSST~Ir~rI~~~  203 (423)
                      ....+...+... -.+|+|+.|+.|        .....++.| ++...+  ...++|+|+||++|.++
T Consensus        80 ~~~~w~~~v~~~~~~~d~v~~~~~y--------~~~~f~~~g~~v~~~p~~~~~~iSsT~IR~~i~~g  139 (174)
T PRK01153         80 FNSIWVSHVESYTPPFDVVYTGNPL--------VARLFREAGYEVRQPPMFNREEYSGTEIRRRMIEG  139 (174)
T ss_pred             hHHHHHHHHHHhCCCCCEEEECChH--------HHHhchhhCCeEecCCccccCCCCHHHHHHHHHcC
Confidence            333344333221 256899999643        122333444 345544  44679999999999754

>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional

Probab=99.24  E-value=2.9e-11  Score=107.35  Aligned_cols=87  Identities=24%  Similarity=0.311  Sum_probs=65.5

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhc-CccccEEEecCC-ccccHH
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAP-YAITEQ  143 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~vi~~~p-~~~~~e  143 (423)
                      +++++.|+|||+|.||+.++++|.+++|+++|++..++    .| +++++.++|+++++. ++....|-.... -.+..+
T Consensus         2 kiai~~GSFDPih~GHl~ii~~A~~~~D~v~v~v~~np----~K-~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l~v~   76 (140)
T PRK13964          2 KIAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSINP----DK-SNASDLDSRFKNVKNKLKDFKNVEVLINENKLTAE   76 (140)
T ss_pred             eEEEEeeeeCCCCHHHHHHHHHHHHhCCEEEEEeccCC----CC-CCCCCHHHHHHHHHHHHcCCCCcEEecCcCCcHHH
Confidence            57899999999999999999999999999999998763    34 478999999999974 222233322111 123445


Q ss_pred             HHHHHHhhcCccEEEEcC
Q 014487          144 FMNRLFNEHKIDYIIHGD  161 (423)
Q Consensus       144 fl~~ll~~~~~d~VV~G~  161 (423)
                      |.    ++.+++++|.|=
T Consensus        77 ~~----~~~~a~~ivrGl   90 (140)
T PRK13964         77 IA----KKLGANFLIRSA   90 (140)
T ss_pred             HH----HHCCCeEEEEec
Confidence            55    577999999994

>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated

Probab=99.24  E-value=6.2e-11  Score=120.11  Aligned_cols=134  Identities=22%  Similarity=0.146  Sum_probs=92.0

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHh--cCeeEEEEecchhhhccCC-CCCCcHHHHHHHHhc-CccccEEE------e
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDEVI------A  134 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~--~d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~-~~~VD~vi------~  134 (423)
                      +++++++|+|||+|.||+.++++|.+.  .|++++.+...+   +.|. .+..+.++|++|++. ++..+.+.      .
T Consensus         1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~---p~K~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~   77 (342)
T PRK07152          1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYIN---PFKKKQKASNGEHRLNMLKLALKNLPKMEVSDFEIK   77 (342)
T ss_pred             CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCC---CCCCCCCCCCHHHHHHHHHHHHhhCCCeEEeHHHHh
Confidence            357899999999999999999999987  378888776654   3454 345556999999973 22222222      2


Q ss_pred             cCCccccHHHHHHHHhhcCcc---EEEEcCC-CCCCCCCCcHHHHHHhCCcEEEeccC--------------------CC
Q 014487          135 NAPYAITEQFMNRLFNEHKID---YIIHGDD-PCLLPDGTDAYALAKKVGRYKQIKRT--------------------EG  190 (423)
Q Consensus       135 ~~p~~~~~efl~~ll~~~~~d---~VV~G~D-~~~g~~g~~~~~~lk~~g~~~~v~r~--------------------~~  190 (423)
                      ....++|.+.++.+-+++ |+   ++++|.| +.....|.+ ++.+-+...++.++|.                    ..
T Consensus        78 ~~~~syt~~tl~~l~~~~-p~~~~~~iiG~D~~~~l~~W~~-~~~l~~~~~~iv~~R~g~~~~~~~~~~~i~~~~~~~~~  155 (342)
T PRK07152         78 RQNVSYTIDTIKYFKKKY-PNDEIYFIIGSDNLEKFKKWKN-IEEILKKVQIVVFKRKKNINKKNLKKYNVLLLKNKNLN  155 (342)
T ss_pred             CCCCCcHHHHHHHHHHhC-CCCcEEEEecHHHhhhcccccC-HHHHHHhCCEEEEECCCCCcccccccCcEEEecCCccc
Confidence            222345667777665555 44   8889988 444556765 4555555676666662                    24


Q ss_pred             CCHHHHHHHHHhc
Q 014487          191 VSSTDIVGRILSS  203 (423)
Q Consensus       191 iSST~Ir~rI~~~  203 (423)
                      ||||+||+++..+
T Consensus       156 iSST~IR~~~~~~  168 (342)
T PRK07152        156 ISSTKIRKGNLLG  168 (342)
T ss_pred             cCHHHHHHHHHcC
Confidence            9999999999865

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.23  E-value=3.4e-11  Score=121.95  Aligned_cols=134  Identities=16%  Similarity=0.168  Sum_probs=88.3

Q ss_pred             CCeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcC-cccc--EEE-ecCCcc
Q 014487           64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVD--EVI-ANAPYA  139 (423)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~VD--~vi-~~~p~~  139 (423)
                      +.++++++|.||++|.||+.++++|.+.+|+|+|++.+...-. .+ +..++.+||++|++.+ +.++  .+. ...|-.
T Consensus         5 ~~~~~~~~G~F~P~H~GHl~~i~~a~~~~d~l~v~i~s~~~~~-~~-~~~~~~~~R~~mi~~~~~~~~~~r~~~~pi~d~   82 (340)
T PRK05379          5 RYDYLVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSADLAR-SI-KNPFSFEERAQMIRAALAGIDLARVTIRPLRDS   82 (340)
T ss_pred             cceEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEEccCCCCC-cC-CCCCCHHHHHHHHHHHhhcCCCceEEEEECCCC
Confidence            4568999999999999999999999999999999998754221 22 3458999999999864 3232  222 212211


Q ss_pred             -cc-H---HHHHHHHh---hcCccEEEEcCCCCCCCCCCcHHH-HHHhCCcEEEeccCCCCCHHHHHHHHHhcc
Q 014487          140 -IT-E---QFMNRLFN---EHKIDYIIHGDDPCLLPDGTDAYA-LAKKVGRYKQIKRTEGVSSTDIVGRILSSM  204 (423)
Q Consensus       140 -~~-~---efl~~ll~---~~~~d~VV~G~D~~~g~~g~~~~~-~lk~~g~~~~v~r~~~iSST~Ir~rI~~~~  204 (423)
                       ++ .   ..++..+.   ..++|++++|+|+..    ...|. ...+.| +..++..+++|+|+||++|..+-
T Consensus        83 ~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~~----~~~~~~~f~~~~-~~~~~~~~~~s~T~iR~~~~~~~  151 (340)
T PRK05379         83 LYNDSLWLAEVQAAVAEHAGADARIGLIGHEKDA----SSYYLRSFPQWE-LVDVPNTEDLSATEIRDAYFEGR  151 (340)
T ss_pred             CcChHHHHHHHHHHHHhccCCCCcEEEECCcCCC----ChHHHHhccccc-cccCCcccccCccHHHHHHHcCC
Confidence             12 2   22222221   257889999988721    11222 222333 33566678899999999998653

>COG1019 Predicted nucleotidyltransferase [General function prediction only]

Probab=99.22  E-value=7.2e-11  Score=104.34  Aligned_cols=127  Identities=27%  Similarity=0.334  Sum_probs=87.3

Q ss_pred             CCCeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhc----Ccc-cc-EEEecC
Q 014487           63 KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG----LKW-VD-EVIANA  136 (423)
Q Consensus        63 ~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~----~~~-VD-~vi~~~  136 (423)
                      .+...|.++|+||.+|.||..||+.|..+|+.+++|++||+....++..++.|++.|++-|..    .+. -. .+-.+.
T Consensus         3 ~kfm~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i~D   82 (158)
T COG1019           3 IKFMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLESIKADYEEIVPIDD   82 (158)
T ss_pred             ccceEEEecccchhhhhhHHHHHHHHHHhCCeEEEEEccHHHHHHhccccCCcHHHHHHHHHHHHHHhcCCcceEEEecC
Confidence            356789999999999999999999999999999999999998876666899999999998874    111 11 233467


Q ss_pred             CccccHHHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHH-hCC----cEEEecc-----CCCCCHHHHHHH
Q 014487          137 PYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK-KVG----RYKQIKR-----TEGVSSTDIVGR  199 (423)
Q Consensus       137 p~~~~~efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk-~~g----~~~~v~r-----~~~iSST~Ir~r  199 (423)
                      ||..+.+       .-..+++|+...-.-   +.-..+.++ +.|    +++.++.     ...+|||+||.-
T Consensus        83 p~G~t~~-------~~~~e~iVVS~ET~~---~Al~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrrg  145 (158)
T COG1019          83 PYGPTVE-------DPDFEAIVVSPETYP---GALKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRRG  145 (158)
T ss_pred             CCCCCCC-------cCceeEEEEccccch---hHHHHHHHHHHCCCCCeEEEEEehhhhhcCCccchhhhhhh
Confidence            7765532       114578888755221   111223333 333    2333433     124999999943

>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins

Probab=99.19  E-value=1.5e-10  Score=104.88  Aligned_cols=127  Identities=20%  Similarity=0.208  Sum_probs=80.2

Q ss_pred             EEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcC-ccccEE-E-----ecCCccc
Q 014487           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVDEV-I-----ANAPYAI  140 (423)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~VD~v-i-----~~~p~~~  140 (423)
                      ++++|+||++|.||+.++++|.+.+|+|+|++.+.+...  ..+..++.++|++|++.. ..-+.+ +     .+.|+.-
T Consensus         2 gl~~G~F~P~H~GHl~li~~a~~~~d~v~vi~~~~~~~~--~~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d~~~~~   79 (158)
T cd02167           2 GIVFGKFAPLHTGHVYLIYKALSQVDELLIIVGSDDTRD--DARTGLPLEKRLRWLREIFPDQENIVVHTLNEPDIPEYP   79 (158)
T ss_pred             EEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCccc--ccCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCCc
Confidence            578999999999999999999999999999998876321  125678999999999853 221111 1     1223210


Q ss_pred             --c---HHHHHHHHhhc---CccEEEEcCCCCCCCCCCcHHHHHHhCC-cEEE--ecc-CCCCCHHHHHHHHH
Q 014487          141 --T---EQFMNRLFNEH---KIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQ--IKR-TEGVSSTDIVGRIL  201 (423)
Q Consensus       141 --~---~efl~~ll~~~---~~d~VV~G~D~~~g~~g~~~~~~lk~~g-~~~~--v~r-~~~iSST~Ir~rI~  201 (423)
                        -   ...++..+.+.   ++|+|+.|+++..     ..+......| +...  ..+ ...+|+|.||+-..
T Consensus        80 ~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~~~~-----~~~~~~~~~~~~~~~v~~~r~~~~iSaT~IR~~p~  147 (158)
T cd02167          80 NGWDIWSNRVKTLIAENTRCRPDIVFTAEEYEA-----AFELVLAYLGAQVVLVDPDRTDISVSATQIRENPF  147 (158)
T ss_pred             hhHHHHHHHHHHHHhhhcCCCCCEEEEccCcch-----hhhhHhhcCCCeEEEeccccccCCcCHHHHHhCHH
Confidence              1   12334444322   6889999988621     1111122233 3333  223 35799999997544

NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase

>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes

Probab=99.17  E-value=9.4e-11  Score=104.58  Aligned_cols=89  Identities=25%  Similarity=0.352  Sum_probs=64.7

Q ss_pred             EEEcCeeccCCHHHHHHHHHHHhcC-CEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhh-ccc------CeeEEcCC
Q 014487          259 VYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYV------DEVIIGAP  330 (423)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~g-d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~-~~V------d~Vvi~~p  330 (423)
                      |++.|+||++|.||..+|++|.+++ |+++|||++|+... .|....+++++++|+.++..+ ...      +-+-+.+|
T Consensus         2 v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~-~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d~   80 (143)
T cd02164           2 VAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLK-NKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDDP   80 (143)
T ss_pred             EEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhcc-cCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccCC
Confidence            7899999999999999999999998 89999999998443 333224699999999888765 222      23334566


Q ss_pred             CCchHHHHhhcCccEEEecCC
Q 014487          331 WEVTKDMITTFNICLVVHGTV  351 (423)
Q Consensus       331 ~~~~~~~i~~~~~d~vv~G~d  351 (423)
                      +.++.   ..-.+|.+|-..+
T Consensus        81 ~Gpt~---~~~~~d~lVVS~E   98 (143)
T cd02164          81 YGPTG---TDPDLEAIVVSPE   98 (143)
T ss_pred             CCCcc---cCCCCCEEEEcHH
Confidence            66542   2235677776654

The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.

>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain

Probab=99.12  E-value=1.4e-10  Score=107.43  Aligned_cols=125  Identities=12%  Similarity=0.139  Sum_probs=80.2

Q ss_pred             EEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhh-cc--cC--eeEEcC-CCC
Q 014487          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RY--VD--EVIIGA-PWE  332 (423)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~-~~--Vd--~Vvi~~-p~~  332 (423)
                      +++.|+|||||.||+.++++|.+.+|+|+|+|.+..... .+   ++.++.+||..|+..+ ..  +|  .|.+.+ +..
T Consensus         2 ~l~~GrF~P~H~GHl~~i~~a~~~~~~vii~i~s~~~~~-~~---~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~   77 (181)
T cd02168           2 LVYIGRFQPFHNGHLAVVLIALEKAKKVIILIGSARTAR-NI---KNPWTSEEREVMIEAALSDAGADLARVHFRPLRDH   77 (181)
T ss_pred             eEEeeccCCCCHHHHHHHHHHHHHCCeEEEEeCCCCCCC-CC---CCCcCHHHHHHHHHHHHhccCCCcceEEEEecCCC
Confidence            678999999999999999999999999999998775322 22   2446999999999875 32  12  333321 111


Q ss_pred             -chHH-H---Hhh-------cCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHh
Q 014487          333 -VTKD-M---ITT-------FNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIA  394 (423)
Q Consensus       333 -~~~~-~---i~~-------~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI~~  394 (423)
                       ...+ +   +++       -++|+++.|.+++.+.+....      ....| +..++...++|+|.|.+++..
T Consensus        78 ~~~~~~W~~~v~~~v~~~~~~~~~i~~~g~~kd~~~~~~~l------fpe~~-~~~~p~~~~iSsT~IR~~i~~  144 (181)
T cd02168          78 LYSDNLWLAEVQQQVLEIAGGSASVGLVGHRKDASSYYLRS------FPQWD-YLEVPNYPDLNATDIRRAYFE  144 (181)
T ss_pred             CCChHHHHHHHHHhChHhhCCCCcEEEeCCccCCCccceee------cCCcC-eecCccccccCHHHHHHHHHh
Confidence             0111 1   112       256888889776433321111      01112 334555568999999999987

N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.10  E-value=7e-10  Score=112.39  Aligned_cols=131  Identities=15%  Similarity=0.235  Sum_probs=86.8

Q ss_pred             CCCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhh-cccC--eeEEcC-
Q 014487          254 PNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVD--EVIIGA-  329 (423)
Q Consensus       254 ~~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~-~~Vd--~Vvi~~-  329 (423)
                      +..+++++.|+|||||.||+.++++|.+.+|+|+|++.+...-.. + + +| ++.+||..+++.+ +.+|  .|.+.+ 
T Consensus         4 ~~~~~~~~~G~F~P~H~GHl~~i~~a~~~~d~l~v~i~s~~~~~~-~-~-~~-~~~~~R~~mi~~~~~~~~~~r~~~~pi   79 (340)
T PRK05379          4 RRYDYLVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSADLARS-I-K-NP-FSFEERAQMIRAALAGIDLARVTIRPL   79 (340)
T ss_pred             ccceEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEEccCCCCCc-C-C-CC-CCHHHHHHHHHHHhhcCCCceEEEEEC
Confidence            346899999999999999999999999999999999987543222 2 1 35 6999999888775 5443  333321 


Q ss_pred             CCCc-hHH----HHhh-------cCccEEEecCCcCCCCCCCCCCChHH-HHHhCCeEEEeCCCCCCCHHHHHHHHHhch
Q 014487          330 PWEV-TKD----MITT-------FNICLVVHGTVSETNTPLTGQSDPYE-VAKSMGIFQLLESPKSITTTSVAQRIIANH  396 (423)
Q Consensus       330 p~~~-~~~----~i~~-------~~~d~vv~G~d~~~~~~~~~~~d~~~-~~k~~G~~~~i~~~~~~Stt~Ii~RI~~~~  396 (423)
                      +... ..+    .+++       -++|+++.|.++..+.+       |. .....|. ..++..+++|+|.|.++|+.+.
T Consensus        80 ~d~~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~~~~~-------~~~~f~~~~~-~~~~~~~~~s~T~iR~~~~~~~  151 (340)
T PRK05379         80 RDSLYNDSLWLAEVQAAVAEHAGADARIGLIGHEKDASSY-------YLRSFPQWEL-VDVPNTEDLSATEIRDAYFEGR  151 (340)
T ss_pred             CCCCcChHHHHHHHHHHHHhccCCCCcEEEECCcCCCChH-------HHHhcccccc-ccCCcccccCccHHHHHHHcCC
Confidence            1111 111    1221       46789999976533321       21 1112232 2566678899999999997644

>PRK07143 hypothetical protein; Provisional

Probab=99.06  E-value=6e-09  Score=102.63  Aligned_cols=136  Identities=18%  Similarity=0.252  Sum_probs=97.5

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCC---
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW---  331 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~---  331 (423)
                      ....+++-|.||-+|.||..+|++|++.++.++|...+++... .++...++++.+||...++++. ||.+++.+..   
T Consensus        14 ~~~~vvaiG~FDGvH~GHq~Ll~~a~~~~~~~vV~tF~~P~~~-~~~~~~~l~~~~er~~~l~~~G-vd~~~~~~F~~~~   91 (279)
T PRK07143         14 FEKPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKNPENL-PKNTNKKFSDLNSRLQTLANLG-FKNIILLDFNEEL   91 (279)
T ss_pred             CCCeEEEEccCCcCCHHHHHHHHHHHHCCCcEEEEEeCChHHh-cccCcccCCCHHHHHHHHHHCC-CCEEEEeCCCHHH
Confidence            3567999999999999999999999999999999888775432 2333457999999999999985 7888775421   


Q ss_pred             --CchHHHHhh---cCccEEEecCCcCCCCCCCCCCChHHHHHhCC-eEEEeC----CCCCCCHHHHHHHHHhc
Q 014487          332 --EVTKDMITT---FNICLVVHGTVSETNTPLTGQSDPYEVAKSMG-IFQLLE----SPKSITTTSVAQRIIAN  395 (423)
Q Consensus       332 --~~~~~~i~~---~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G-~~~~i~----~~~~~Stt~Ii~RI~~~  395 (423)
                        ..++++++.   ++++.+|.|.|+.-.-  ...-+. ...+..+ .+..++    ....+|||.|.+-|.+.
T Consensus        92 a~ls~e~Fi~~ll~l~~~~iVvG~Df~FG~--~r~G~~-~~L~~~~~~v~~v~~~~~~g~~ISST~IR~~l~~G  162 (279)
T PRK07143         92 QNLSGNDFIEKLTKNQVSFFVVGKDFRFGK--NASWNA-DDLKEYFPNVHIVEILKINQQKISTSLLKEFIEFG  162 (279)
T ss_pred             hCCCHHHHHHHHHhcCCCEEEECCCcccCC--CCCCCH-HHHHHhCCcEEEeCCEEcCCcEEcHHHHHHHHHcC
Confidence              134566665   7999999999987552  122233 3344444 444443    23469999998766443

>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic

Probab=99.02  E-value=2.1e-09  Score=102.92  Aligned_cols=85  Identities=16%  Similarity=0.144  Sum_probs=52.2

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcC--e-e-EE-E-EecchhhhccCCCCCCcHHHHHHHHhc-CccccEE------E
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGD--E-L-VV-G-VVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEV------I  133 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d--~-L-iV-g-V~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~v------i  133 (423)
                      ..+++|+|||+|.||+.++++|.+..+  . + ++ + +.+-. ....| ....+.++|++|++- +.....+      +
T Consensus         2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~-~~~~k-~~~~~~~~Rl~Ml~lai~~~~~~~v~~~E~   79 (225)
T cd09286           2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVN-DAYGK-KGLASAKHRVAMCRLAVQSSDWIRVDDWES   79 (225)
T ss_pred             EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeec-cCCCC-CCCCCHHHHHHHHHHHHccCCCEEEEehhc
Confidence            367899999999999999999988752  2 1 21 1 11211 11223 567899999999983 2222222      2


Q ss_pred             ecCCccccHHHHHHHHhhcC
Q 014487          134 ANAPYAITEQFMNRLFNEHK  153 (423)
Q Consensus       134 ~~~p~~~~~efl~~ll~~~~  153 (423)
                      ....+.+|-+.++.+-+++.
T Consensus        80 ~~~~~syT~~TL~~l~~~~p   99 (225)
T cd09286          80 LQPEWMRTAKVLRHHREEIN   99 (225)
T ss_pred             cCCccccHHHHHHHHHHHhc
Confidence            22234456677777666563

Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.

>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins

Probab=99.02  E-value=5.4e-09  Score=94.79  Aligned_cols=128  Identities=18%  Similarity=0.174  Sum_probs=82.7

Q ss_pred             EEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhh-cccCeeEE---cCCCCc
Q 014487          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVII---GAPWEV  333 (423)
Q Consensus       258 iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~-~~Vd~Vvi---~~p~~~  333 (423)
                      ++++.|+|||+|.||+.++++|.+.+|.|+|++.++..   .|.+ ++.++.++|+.+++.. +.-+.+.+   ..+...
T Consensus         1 igl~~G~F~P~H~GHl~li~~a~~~~d~v~vi~~~~~~---~~~~-~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d~~   76 (158)
T cd02167           1 IGIVFGKFAPLHTGHVYLIYKALSQVDELLIIVGSDDT---RDDA-RTGLPLEKRLRWLREIFPDQENIVVHTLNEPDIP   76 (158)
T ss_pred             CEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCc---cccc-CCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Confidence            46889999999999999999999999999999998863   2333 4567999999888654 55444443   111111


Q ss_pred             -----h---H----HHHhhc---CccEEEecCCcCCCCCCCCCCChHHHHHhCCe-EEEeC--C-CCCCCHHHHHHHHHh
Q 014487          334 -----T---K----DMITTF---NICLVVHGTVSETNTPLTGQSDPYEVAKSMGI-FQLLE--S-PKSITTTSVAQRIIA  394 (423)
Q Consensus       334 -----~---~----~~i~~~---~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~-~~~i~--~-~~~~Stt~Ii~RI~~  394 (423)
                           -   .    ..+...   ++|+++-|.++....        +......|. ...++  + ...+|+|.|.+-...
T Consensus        77 ~~~~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~~~~~~--------~~~~~~~~~~~~~v~~~r~~~~iSaT~IR~~p~~  148 (158)
T cd02167          77 EYPNGWDIWSNRVKTLIAENTRCRPDIVFTAEEYEAAF--------ELVLAYLGAQVVLVDPDRTDISVSATQIRENPFR  148 (158)
T ss_pred             CCchhHHHHHHHHHHHHhhhcCCCCCEEEEccCcchhh--------hhHhhcCCCeEEEeccccccCCcCHHHHHhCHHH
Confidence                 0   1    122221   678888887642221        111234443 33332  2 357999999987776


Q ss_pred             chH
Q 014487          395 NHE  397 (423)
Q Consensus       395 ~~~  397 (423)
                      +++
T Consensus       149 ~w~  151 (158)
T cd02167         149 YWY  151 (158)
T ss_pred             HHH
Confidence            665

NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=99.01  E-value=4.8e-09  Score=108.39  Aligned_cols=130  Identities=18%  Similarity=0.225  Sum_probs=84.0

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhh-----hccCCCCCCcHHHHHHHHhcC-ccccEEE-e---
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI-----IANKGPPVLSMEERLALVSGL-KWVDEVI-A---  134 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i-----~~~K~~pi~t~eER~~~l~~~-~~VD~vi-~---  134 (423)
                      .++++++|+|||+|.||+.+|++|.++++.|+|+|.+++.-     ...+.+..++.++|.++++.. +..+.|. .   
T Consensus        52 ~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v~v~~~~  131 (399)
T PRK08099         52 KKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIKIHAFN  131 (399)
T ss_pred             CcEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCEEEEecC
Confidence            35899999999999999999999999999999999887631     111225688999999999863 2322221 1   


Q ss_pred             --cCC-cccc-H---HHHHHHHhh--cCccEEEEcCCCCCCCCCCcHHHHHHhCC-cEEEec--c-CCCCCHHHHHHHHH
Q 014487          135 --NAP-YAIT-E---QFMNRLFNE--HKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIK--R-TEGVSSTDIVGRIL  201 (423)
Q Consensus       135 --~~p-~~~~-~---efl~~ll~~--~~~d~VV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~--r-~~~iSST~Ir~rI~  201 (423)
                        +.| |... .   +.+..++.+  .++++++.|+++.     .+.|  ++..| +...++  | ..+||+|.||+--.
T Consensus       132 ~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~d-----~~~~--~~~~~~~~~~vd~~r~~~~iSaT~IR~~p~  204 (399)
T PRK08099        132 EEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQD-----APQY--EEHLGIETVLVDPKRTFMNISGTQIRENPF  204 (399)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCCC-----hHHH--HHhcCCceeeeccccccCCcCHHHHhhCHH
Confidence              111 2111 1   333334433  3689999998761     1223  33322 343343  3 34799999997644

>PLN02388 phosphopantetheine adenylyltransferase

Probab=98.99  E-value=3e-09  Score=97.88  Aligned_cols=137  Identities=20%  Similarity=0.271  Sum_probs=91.3

Q ss_pred             CCCCCCeEEEEcCeeccCCHHHHHHHHHHHhcC-CEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhh-cc------c
Q 014487          251 GPGPNARVVYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RY------V  322 (423)
Q Consensus       251 ~~~~~~~iv~~~G~FDl~H~GHi~~L~~A~~~g-d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~-~~------V  322 (423)
                      .+......|++.|+||.+|.||..+|.+|.+++ +.++||+++|+.... |.....++++++|...+.++ ..      +
T Consensus        14 ~~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~-k~~~~~I~~~e~R~~~l~~fl~~~~p~~~~   92 (177)
T PLN02388         14 SPPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSK-KQFAELIQPIEERMHNVEEYIKSIKPELVV   92 (177)
T ss_pred             CCCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcc-cCCCcccCCHHHHHHHHHHHHHHcCCCceE
Confidence            344456789999999999999999999999998 489999999997633 33236899999999888764 21      2


Q ss_pred             CeeEEcCCCCchHHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCC----eEEEe-----C-CCCCCCHHHHHHHH
Q 014487          323 DEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMG----IFQLL-----E-SPKSITTTSVAQRI  392 (423)
Q Consensus       323 d~Vvi~~p~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G----~~~~i-----~-~~~~~Stt~Ii~RI  392 (423)
                      .-+-+.+|++++.   ..-++|.+|-+.+-..+     +......-+..|    .++.+     + ....+|||.|.+|.
T Consensus        93 ~i~~i~D~~Gpt~---~~~~~d~LVVS~ET~~g-----~~~IN~~R~e~Gl~pL~i~~v~~v~~~~~~~kiSST~iR~~~  164 (177)
T PLN02388         93 QAEPIIDPYGPSI---VDENLEAIVVSKETLPG-----GLSVNKKRAERGLSQLKIEVVDIVPEESTGNKLSSTTLRRLE  164 (177)
T ss_pred             EEEEecCCCCCcc---cCCCCCEEEEcHhHhhh-----HHHHHHHHHHCCCCCeEEEEEEeEecCCCCCccCHHHHHHHH
Confidence            3344567776542   23457778777653221     111112223344    11222     1 24679999999998


Q ss_pred             Hhch
Q 014487          393 IANH  396 (423)
Q Consensus       393 ~~~~  396 (423)
                      .++.
T Consensus       165 ~~~~  168 (177)
T PLN02388        165 AEKA  168 (177)
T ss_pred             HHHH
Confidence            7655

>PRK13670 hypothetical protein; Provisional

Probab=98.98  E-value=2e-09  Score=110.60  Aligned_cols=104  Identities=19%  Similarity=0.310  Sum_probs=78.4

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcC-eeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEecCCcccc----
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGD-ELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAIT----  141 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d-~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~----  141 (423)
                      .+=++-=|||+|.||+.+|++|++.+. .++++|.|-..+.+ ..+++++..+|.+++..+ +||.|++ .||.+.    
T Consensus         3 ~~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qr-g~p~i~~~~~R~~~a~~~-GvD~vie-lpf~~a~~sa   79 (388)
T PRK13670          3 VTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQR-GEPAIVDKWTRAKMALEN-GVDLVVE-LPFLYSVQSA   79 (388)
T ss_pred             eeEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCC-CCCCCCCHHHHHHHHHHc-CCCEEEE-eCCchHhCCH
Confidence            344455699999999999999999762 45555555554433 226699999999999998 9999998 677654    


Q ss_pred             HHHHHH---HHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCC
Q 014487          142 EQFMNR---LFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG  180 (423)
Q Consensus       142 ~efl~~---ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g  180 (423)
                      ++|++.   ++++++++.||+|.|       .++.+.++..+
T Consensus        80 e~F~~~aV~iL~~l~v~~lv~G~e-------~g~~~~L~~~~  114 (388)
T PRK13670         80 DFFAEGAVSILDALGVDSLVFGSE-------SGDIEDFQKIA  114 (388)
T ss_pred             HHHHHhHHHHHHHcCCCEEEEcCC-------CCCHHHHHHHH
Confidence            479887   778899999999999       23455555544

>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional

Probab=98.97  E-value=5.7e-09  Score=96.13  Aligned_cols=124  Identities=22%  Similarity=0.295  Sum_probs=78.8

Q ss_pred             EEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhh-c--cc--CeeEEcC-C-
Q 014487          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-R--YV--DEVIIGA-P-  330 (423)
Q Consensus       258 iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~-~--~V--d~Vvi~~-p-  330 (423)
                      ++++.|+|||||.||+.++++|.+.+|+|+|+|.+...  ..+.. +| ++.+||..+++.. .  .+  +.+.+.. + 
T Consensus         2 ~gl~~G~F~P~H~GHl~~i~~a~~~~d~v~v~i~s~~~--~~~~~-~p-~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D   77 (174)
T PRK01153          2 RALFIGRFQPFHKGHLEVIKWILEEVDELIIGIGSAQE--SHTLK-NP-FTAGERILMIRKALEEEGIDLSRYYIIPIPD   77 (174)
T ss_pred             EEEEeeccCCCCHHHHHHHHHHHHhCCEEEEEecCCCC--CCCCC-CC-CCHHHHHHHHHHHHhcCCCCcceeeEecCCC
Confidence            47899999999999999999999999999999965431  11222 35 5899999888653 3  22  2333322 2 


Q ss_pred             CCchHHHHhhc-----CccEEEecCCcCCCCCCCCCCChHHHHHhCCe-EEEeC--CCCCCCHHHHHHHHHhch
Q 014487          331 WEVTKDMITTF-----NICLVVHGTVSETNTPLTGQSDPYEVAKSMGI-FQLLE--SPKSITTTSVAQRIIANH  396 (423)
Q Consensus       331 ~~~~~~~i~~~-----~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~-~~~i~--~~~~~Stt~Ii~RI~~~~  396 (423)
                      ......+....     ++|+++.|..+...           .....|. ....+  ....+|+|.|.++|.+..
T Consensus        78 ~~~~~~w~~~v~~~~~~~d~v~~~~~y~~~-----------~f~~~g~~v~~~p~~~~~~iSsT~IR~~i~~g~  140 (174)
T PRK01153         78 IEFNSIWVSHVESYTPPFDVVYTGNPLVAR-----------LFREAGYEVRQPPMFNREEYSGTEIRRRMIEGD  140 (174)
T ss_pred             cchHHHHHHHHHHhCCCCCEEEECChHHHH-----------hchhhCCeEecCCccccCCCCHHHHHHHHHcCC
Confidence            12222233323     66888888532221           1123343 23333  346899999999997654

>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]

Probab=98.96  E-value=2.5e-09  Score=95.26  Aligned_cols=88  Identities=25%  Similarity=0.407  Sum_probs=67.6

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcC-ccccEEEecCCccccHH
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVDEVIANAPYAITEQ  143 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~VD~vi~~~p~~~~~e  143 (423)
                      +++++.-|+|||++.||+.+|++|.++.|+++|+|.-++    .| +|+++.+||.++++.. +..+.|-. ..|  + .
T Consensus         2 ~~iavypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~np----~K-~plFsleER~~l~~~~~~~l~nV~V-~~f--~-~   72 (159)
T COG0669           2 MKIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAINP----SK-KPLFSLEERVELIREATKHLPNVEV-VGF--S-G   72 (159)
T ss_pred             CeeEEeCCCCCCCccchHHHHHHHHHhccEEEEEEEeCC----Cc-CCCcCHHHHHHHHHHHhcCCCceEE-Eec--c-c
Confidence            568999999999999999999999999999999998754    34 7999999999999852 23333322 112  1 2


Q ss_pred             HHHHHHhhcCccEEEEcC
Q 014487          144 FMNRLFNEHKIDYIIHGD  161 (423)
Q Consensus       144 fl~~ll~~~~~d~VV~G~  161 (423)
                      .+-++.++.++.++|-|=
T Consensus        73 Llvd~ak~~~a~~ivRGL   90 (159)
T COG0669          73 LLVDYAKKLGATVLVRGL   90 (159)
T ss_pred             HHHHHHHHcCCCEEEEec
Confidence            333444678999999993

>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase

Probab=98.96  E-value=6.4e-09  Score=100.23  Aligned_cols=98  Identities=20%  Similarity=0.202  Sum_probs=59.8

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhc--Cee-EEEEecchhhhccCCCCCCcHHHHHHHHh-cCcccc------EEEe
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALG--DEL-VVGVVSDEEIIANKGPPVLSMEERLALVS-GLKWVD------EVIA  134 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~L-iVgV~sd~~i~~~K~~pi~t~eER~~~l~-~~~~VD------~vi~  134 (423)
                      ....+.+|+|||+|.||+.+++.|++..  +.+ +|.+...+.-...+.+...+.++|++|++ ++....      ..+.
T Consensus        22 ~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~~~~~~V~~~E~~  101 (236)
T PLN02945         22 RVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKKKGLASAEHRIQMCQLACEDSDFIMVDPWEAR  101 (236)
T ss_pred             eEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEecHHHhC
Confidence            3456778899999999999999888864  332 22222222111122246779999999997 222221      1223


Q ss_pred             cCCccccHHHHHHHHhhcC-------cc---EEEEcCC
Q 014487          135 NAPYAITEQFMNRLFNEHK-------ID---YIIHGDD  162 (423)
Q Consensus       135 ~~p~~~~~efl~~ll~~~~-------~d---~VV~G~D  162 (423)
                      ...+..|.+.++.+-++++       ++   ++++|.|
T Consensus       102 ~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D  139 (236)
T PLN02945        102 QSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSD  139 (236)
T ss_pred             CCCCccHHHHHHHHHHHhccccccCCCCceEEEEechh
Confidence            2334556677776666662       33   7889998

>COG1019 Predicted nucleotidyltransferase [General function prediction only]

Probab=98.89  E-value=3.3e-09  Score=93.93  Aligned_cols=126  Identities=21%  Similarity=0.320  Sum_probs=84.4

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhh----ccc-C-eeEEc
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC----RYV-D-EVIIG  328 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~----~~V-d-~Vvi~  328 (423)
                      +..+|.+.|+||.||.||-.+|..|..+|+.+++||+||+.++++|.  +++.|++.|...|...    +.= + -|-+.
T Consensus         4 kfm~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IGlTsDe~~k~~k~--~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i~   81 (158)
T COG1019           4 KFMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKK--EKIEPYEVRLRNLRNFLESIKADYEEIVPID   81 (158)
T ss_pred             cceEEEecccchhhhhhHHHHHHHHHHhCCeEEEEEccHHHHHHhcc--ccCCcHHHHHHHHHHHHHHhcCCcceEEEec
Confidence            35679999999999999999999999999999999999999988653  7999999999766552    211 1 34456


Q ss_pred             CCCCchHHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCC----eEEEeC-----CCCCCCHHHHHH
Q 014487          329 APWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMG----IFQLLE-----SPKSITTTSVAQ  390 (423)
Q Consensus       329 ~p~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G----~~~~i~-----~~~~~Stt~Ii~  390 (423)
                      +|++.+.   ..-..|++|-..+-..     ......+.-.+.|    .++.++     ....+|||.|.+
T Consensus        82 Dp~G~t~---~~~~~e~iVVS~ET~~-----~Al~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrr  144 (158)
T COG1019          82 DPYGPTV---EDPDFEAIVVSPETYP-----GALKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRR  144 (158)
T ss_pred             CCCCCCC---CcCceeEEEEccccch-----hHHHHHHHHHHCCCCCeEEEEEehhhhhcCCccchhhhhh
Confidence            7776542   2224566665543211     1111122223445    123332     335789998875

>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=98.87  E-value=4.2e-08  Score=92.30  Aligned_cols=95  Identities=19%  Similarity=0.166  Sum_probs=67.4

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcC--CEEEEEEecChhhhhccCCCCCCCCHHHHHHHHH-hhcccCeeEEcC---
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGA---  329 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~g--d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~Vd~Vvi~~---  329 (423)
                      +++++++|+|||+|.||+.++++|++..  |.+++..+....   .|.. +.+++.++|+.+++ +++..+.+.+.+   
T Consensus         4 ~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~---~k~~-~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~   79 (203)
T PRK00071          4 KRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPP---HKPQ-KPLAPLEHRLAMLELAIADNPRFSVSDIEL   79 (203)
T ss_pred             cEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCC-CCCCCHHHHHHHHHHHhcCCCceEEeHHHH
Confidence            5799999999999999999999999876  888887776542   3332 46889999998885 457777666641   


Q ss_pred             ---CCCchHHHHhhc---Ccc---EEEecCCcCC
Q 014487          330 ---PWEVTKDMITTF---NIC---LVVHGTVSET  354 (423)
Q Consensus       330 ---p~~~~~~~i~~~---~~d---~vv~G~d~~~  354 (423)
                         ....+.+.++.+   -|+   +++.|.|.-.
T Consensus        80 ~~~~~syT~~tl~~l~~~~p~~~~~fiiG~D~l~  113 (203)
T PRK00071         80 ERPGPSYTIDTLRELRARYPDVELVFIIGADALA  113 (203)
T ss_pred             hCCCCCCHHHHHHHHHHHCCCCcEEEEEcHHHhh
Confidence               123344544433   354   6788977533

>cd02156 nt_trans nucleotidyl transferase superfamily

Probab=98.85  E-value=1.9e-09  Score=90.81  Aligned_cols=58  Identities=22%  Similarity=0.245  Sum_probs=50.9

Q ss_pred             EEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhh
Q 014487          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC  319 (423)
Q Consensus       258 iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~  319 (423)
                      +++++|+||++|.||+.++++|++++|.+++++..+....   .+ .++.+.++|...++++
T Consensus         1 ~~~~~G~Fdp~H~GH~~l~~~a~~~~d~~i~~i~~~~~~~---~~-~~~~~~~~R~~~l~~~   58 (105)
T cd02156           1 KARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVK---VW-QDPHELEERKESIEED   58 (105)
T ss_pred             CEEeCCCCCCCCHHHHHHHHHHHHhCCcEEEEEcCCCccc---cc-CChHHHHHHHHHHHHH
Confidence            3788999999999999999999999999999999887543   22 3689999999999988

nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.

>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase

Probab=98.83  E-value=4.7e-08  Score=91.08  Aligned_cols=93  Identities=16%  Similarity=0.128  Sum_probs=65.7

Q ss_pred             EEEEcCeeccCCHHHHHHHHHHHhcC--CEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhh-cccCeeEEcCC----
Q 014487          258 VVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGAP----  330 (423)
Q Consensus       258 iv~~~G~FDl~H~GHi~~L~~A~~~g--d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~-~~Vd~Vvi~~p----  330 (423)
                      +++++|+|||+|.||+.+++.|++.+  |.|+|.+..+.   ..|+  .+.++.++|+.+++.+ +....+.+.+.    
T Consensus         1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~---~~k~--~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~   75 (192)
T cd02165           1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANP---PHKP--PKPASFEHRLEMLKLAIEDNPKFEVSDIEIKR   75 (192)
T ss_pred             CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCC---CCCC--CCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhC
Confidence            57899999999999999999999999  99999887664   2343  4778999999888754 55666666321    


Q ss_pred             --CCchHHHHhhc---Cc--c-EEEecCCcCCC
Q 014487          331 --WEVTKDMITTF---NI--C-LVVHGTVSETN  355 (423)
Q Consensus       331 --~~~~~~~i~~~---~~--d-~vv~G~d~~~~  355 (423)
                        ...+.+.++.+   -|  + +++.|.|...+
T Consensus        76 ~~~~~t~~tl~~l~~~~p~~~~~~liG~D~l~~  108 (192)
T cd02165          76 DGPSYTIDTLEELRERYPNAELYFIIGSDNLIR  108 (192)
T ss_pred             CCCCCHHHHHHHHHHhccCCCEEEEEcHHHhhh
Confidence              23344444443   23  3 45778775443

Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.

>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional

Probab=98.82  E-value=1.8e-08  Score=94.14  Aligned_cols=59  Identities=14%  Similarity=0.084  Sum_probs=50.9

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcC
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL  126 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~  126 (423)
                      ...+++|-|.++|.||+++|++|.+.||+|+|++.|...-...  +.-+|..||.+|++..
T Consensus         5 d~~v~iGRFQPfH~GHl~~I~~al~~~devII~IGSA~~s~t~--~NPFTa~ER~~MI~~a   63 (196)
T PRK13793          5 DYLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMERNI--KNPFLAIEREQMILSN   63 (196)
T ss_pred             eEEEEEecCCCCcHHHHHHHHHHHHhCCEEEEEEccCCCCCCC--CCCCCHHHHHHHHHHh
Confidence            4789999999999999999999999999999999997643222  4568999999999873

>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=98.82  E-value=4.6e-08  Score=90.08  Aligned_cols=131  Identities=13%  Similarity=0.070  Sum_probs=82.3

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhh-ccc--CeeEEcCCC-
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYV--DEVIIGAPW-  331 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~-~~V--d~Vvi~~p~-  331 (423)
                      +++++++|+|||+|.||+.+++++ ...|.+++..+...   ..|   ++..+.++|+.+++.+ +..  +.+.+.+.+ 
T Consensus         2 ~~i~ifGGSFDP~H~GHl~ia~~~-~~~d~v~~vP~~~~---~~~---k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~   74 (174)
T PRK08887          2 KKIAVFGSAFNPPSLGHKSVIESL-SHFDLVLLVPSIAH---AWG---KTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQ   74 (174)
T ss_pred             CeEEEeCCCCCCCCHHHHHHHHHh-hcCCEEEEEECCCC---ccc---CCCCCHHHHHHHHHHHHhccCCCceEEehHHh
Confidence            478999999999999999999996 46799988865421   112   3677999999888654 432  355552211 


Q ss_pred             --------CchHHHHhhcC---cc---EEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhch
Q 014487          332 --------EVTKDMITTFN---IC---LVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANH  396 (423)
Q Consensus       332 --------~~~~~~i~~~~---~d---~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI~~~~  396 (423)
                              ..|.+.++.++   |+   +++.|.|...+ +..|.. ...+.+ .-.+...++...+|+|.|.+++..++
T Consensus        75 ~~~~~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~-l~~W~~-~~~i~~-~~~l~~~~~~~~ISST~IR~~l~~g~  150 (174)
T PRK08887         75 ELYAPDESVTTYALLTRLQELYPEADLTFVIGPDNFLK-FAKFYK-ADEITQ-RWTVMACPEKVPIRSTDIRNALQNGK  150 (174)
T ss_pred             hhccCCCCcchHHHHHHHHHHCCCCeEEEEEccchHHH-HHHhCC-HHHHHh-hCeEEEeCCCCCcCHHHHHHHHHcCC
Confidence                    12334444332   32   35669875443 222222 222223 33344557667899999999997654

>PRK13671 hypothetical protein; Provisional

Probab=98.79  E-value=2.3e-08  Score=99.13  Aligned_cols=89  Identities=25%  Similarity=0.421  Sum_probs=71.1

Q ss_pred             EecccCcCcHHHHHHHHHHHHh--cCeeEEEEecchhhhccCC-CCCCcHHHHHHHHhcCccccEEEecCCcccc----H
Q 014487           70 MDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKG-PPVLSMEERLALVSGLKWVDEVIANAPYAIT----E  142 (423)
Q Consensus        70 ~~G~FD~lH~GH~~lL~qA~~~--~d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~----~  142 (423)
                      ++-.|||+|.||..++++|++.  +|.+++.+..++   ..|+ +.+++.++|++|+..+ +||.|++ .|+.+.    +
T Consensus         5 IIaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~---~qrg~pa~~~~~~R~~ma~~~-G~DLViE-LP~~~a~~sAe   79 (298)
T PRK13671          5 IIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY---TQRGEIAVASFEKRKKIALKY-GVDKVIK-LPFEYATQAAH   79 (298)
T ss_pred             EEeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC---CCCCCCCCCCHHHHHHHHHHc-CCCEEEe-ccHHHHhhchH
Confidence            4458999999999999999997  488888887776   3455 6677999999999998 9999998 665443    3


Q ss_pred             HHHH---HHHhhcCccEEEEcCCC
Q 014487          143 QFMN---RLFNEHKIDYIIHGDDP  163 (423)
Q Consensus       143 efl~---~ll~~~~~d~VV~G~D~  163 (423)
                      .|-.   .++..+++|.++.|.++
T Consensus        80 ~FA~gaV~lL~~lgvd~l~FGsE~  103 (298)
T PRK13671         80 IFAKGAIKKLNKEKIDKLIFGSES  103 (298)
T ss_pred             HHHHHHHHHHHHcCCCEEEECCCC
Confidence            4432   37788999999999775

>cd02156 nt_trans nucleotidyl transferase superfamily

Probab=98.73  E-value=1.3e-08  Score=85.63  Aligned_cols=57  Identities=23%  Similarity=0.280  Sum_probs=49.8

Q ss_pred             EEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcC
Q 014487           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL  126 (423)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~  126 (423)
                      +++.|+||++|.||+.++++|+++++.+++++..++....  ..++.+.++|.++++++
T Consensus         2 ~~~~G~Fdp~H~GH~~l~~~a~~~~d~~i~~i~~~~~~~~--~~~~~~~~~R~~~l~~~   58 (105)
T cd02156           2 ARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVKV--WQDPHELEERKESIEED   58 (105)
T ss_pred             EEeCCCCCCCCHHHHHHHHHHHHhCCcEEEEEcCCCcccc--cCChHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999998875432  23689999999999985

nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.

>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase

Probab=98.72  E-value=1.8e-07  Score=87.31  Aligned_cols=90  Identities=17%  Similarity=0.142  Sum_probs=61.0

Q ss_pred             EcCeeccCCHHHHHHHHHHHhcC--CEEEEEEecChhhhhccCCCCCCCCHHHHHHHHH-hhcccCeeEEcC------CC
Q 014487          261 IDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGA------PW  331 (423)
Q Consensus       261 ~~G~FDl~H~GHi~~L~~A~~~g--d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~Vd~Vvi~~------p~  331 (423)
                      ++|+|||+|.||+.++++|.+.+  |.+++..+.+.   ..|.. ....+.++|+.|++ +++..+.+.+.+      ..
T Consensus         2 ~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~---p~k~~-~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~   77 (193)
T TIGR00482         2 FGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANP---PHKKT-YEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGP   77 (193)
T ss_pred             ccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCC---CCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCC
Confidence            58999999999999999999875  77877666554   23432 34579999998886 667777766642      12


Q ss_pred             CchHHHHhhc---Ccc---EEEecCCcCC
Q 014487          332 EVTKDMITTF---NIC---LVVHGTVSET  354 (423)
Q Consensus       332 ~~~~~~i~~~---~~d---~vv~G~d~~~  354 (423)
                      ..|.+.++.+   -|+   +++-|.|...
T Consensus        78 syT~~tl~~l~~~~p~~~~~~iiG~D~l~  106 (193)
T TIGR00482        78 SYTIDTLKHLKKKYPDVELYFIIGADALR  106 (193)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEEcHHHhh
Confidence            2344444443   343   4678877543

This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.

>cd00560 PanC Pantoate-beta-alanine ligase

Probab=98.69  E-value=1.6e-08  Score=99.41  Aligned_cols=112  Identities=21%  Similarity=0.267  Sum_probs=86.2

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhcc-CC--CCCCcHHHHHHHHhcCccccEEEecCCcccc-
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KG--PPVLSMEERLALVSGLKWVDEVIANAPYAIT-  141 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~-K~--~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~-  141 (423)
                      -.|.+.|+   +|.||+.||++|++.++.++|.+..+|.-... ..  +.+.+.++|+++++.+ +||.++....-.+. 
T Consensus        25 g~V~TmG~---LH~GH~~LI~~a~~~a~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~-GvD~vF~p~~~~m~p  100 (277)
T cd00560          25 GFVPTMGA---LHEGHLSLVRRARAENDVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA-GVDLLFAPSVEEMYP  100 (277)
T ss_pred             EEEECCCc---ccHHHHHHHHHHHHhCCEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC-CCCEEECCCHHHcCC
Confidence            36778999   99999999999999999889998888754221 22  4588899999999997 99999642222222 


Q ss_pred             HHHHHHHHhhcCccEEEEcC----------------------C-CCCCCCCCcHHHHHHhCCc
Q 014487          142 EQFMNRLFNEHKIDYIIHGD----------------------D-PCLLPDGTDAYALAKKVGR  181 (423)
Q Consensus       142 ~efl~~ll~~~~~d~VV~G~----------------------D-~~~g~~g~~~~~~lk~~g~  181 (423)
                      ++|+..+.+..++..+++|.                      | ++||.++.+....+++.++
T Consensus       101 ~~f~~~~v~~~~~~~il~G~~RpghF~GV~tvv~kLf~iv~Pd~~~FG~kd~gq~~~Lk~~~~  163 (277)
T cd00560         101 EGLFSTFVDVGPLSEVLEGASRPGHFRGVATVVAKLFNLVQPDRAYFGEKDAQQLAVIRRMVR  163 (277)
T ss_pred             CCCceEEEecCCCceEEecCCCCccccceeeeehhhhcccCCCeEEECCCccccHHHHHHHHH
Confidence            35554333557889999999                      9 9999999888888887654

PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.

>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase

Probab=98.67  E-value=2.4e-07  Score=93.63  Aligned_cols=129  Identities=21%  Similarity=0.203  Sum_probs=86.9

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhc-CccccEE--EecCCcccc
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEV--IANAPYAIT  141 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~v--i~~~p~~~~  141 (423)
                      .+++++.|+|||+|.||+.++++|.+++|.++|.|...      + +++++.++|++|++. ++..+.|  +...+|.++
T Consensus       139 ~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~~~------~-~~~f~~~~R~~~v~~~~~~~~nv~v~~~~~~~is  211 (332)
T TIGR00124       139 NKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVVKE------D-ASLFSYDERFALVKQGIQDLSNVTVHNGSAYIIS  211 (332)
T ss_pred             CcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEEeC------C-CCCCCHHHHHHHHHHHhcCCCCEEEEecCCceec
Confidence            47899999999999999999999999999999998632      2 579999999999985 2222222  222333222


Q ss_pred             H------------------------HHHHHHHhhcCccEEEEcCCCCCCCCCCcHHH-HHH---------hCCcEEEecc
Q 014487          142 E------------------------QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYA-LAK---------KVGRYKQIKR  187 (423)
Q Consensus       142 ~------------------------efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~-~lk---------~~g~~~~v~r  187 (423)
                      .                        -|-+.+-..+++..-.+|+.+..-.  +..|+ .++         ..-++.+++|
T Consensus       212 ~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~~--t~~yn~~m~~~~~~~~~~~~I~~~~I~R  289 (332)
T TIGR00124       212 RATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCPV--TALYNQKMKYWLEEPNDAPPIEVVEIQR  289 (332)
T ss_pred             cccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCHh--HHHHHHHHHHhhhccCCCCCcEEEEEee
Confidence            0                        1222233457888888898864322  22343 233         1235778888


Q ss_pred             C----CCCCHHHHHHHHHh
Q 014487          188 T----EGVSSTDIVGRILS  202 (423)
Q Consensus       188 ~----~~iSST~Ir~rI~~  202 (423)
                      .    ..+|.|.||+.|.+
T Consensus       290 ~~~~~~~~SASaIR~~L~~  308 (332)
T TIGR00124       290 KLAAGGPISASTVRELLAK  308 (332)
T ss_pred             ecCCCCeeCHHHHHHHHHc
Confidence            3    24999999999964

ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.

>PRK00380 panC pantoate--beta-alanine ligase; Reviewed

Probab=98.65  E-value=2e-08  Score=99.00  Aligned_cols=110  Identities=20%  Similarity=0.226  Sum_probs=81.2

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhcc-CC--CCCCcHHHHHHHHhcCccccEEEecCCcccc-H
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KG--PPVLSMEERLALVSGLKWVDEVIANAPYAIT-E  142 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~-K~--~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~-~  142 (423)
                      -|.+.|+   +|.||+.+|++|++.++.++|.+.+++.-... ..  +.+.|.++|.++++.+ +||.++....-.+. +
T Consensus        26 ~v~tmG~---lH~GH~~Li~~a~~~a~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~-GvD~v~~p~~~~myp~  101 (281)
T PRK00380         26 LVPTMGA---LHEGHLSLVREARAEADIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA-GVDLVFAPSVEEMYPQ  101 (281)
T ss_pred             EEEccCc---eeHHHHHHHHHHHHhCCEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc-CCCEEEeCCHHHCCCc
Confidence            4567777   99999999999999999888888887754222 11  4688999999999998 89999874222222 2


Q ss_pred             HHHHHHHhhcCccEEEEcC----------------------CC-CCCCCCCcHHHHHHhCCc
Q 014487          143 QFMNRLFNEHKIDYIIHGD----------------------DP-CLLPDGTDAYALAKKVGR  181 (423)
Q Consensus       143 efl~~ll~~~~~d~VV~G~----------------------D~-~~g~~g~~~~~~lk~~g~  181 (423)
                      +|...++.. ++..+++|.                      |+ .||.+..+....+++.++
T Consensus       102 ~f~~~i~~~-~~~~vl~G~~RpghF~Gv~tvv~kLf~iv~Pd~a~FG~kd~qq~~~l~~~~~  162 (281)
T PRK00380        102 GLQTYVSVP-GLSDVLEGASRPGHFRGVATVVTKLFNIVQPDVAYFGEKDYQQLAVIRRMVA  162 (281)
T ss_pred             cceeEEEcc-cccccccCCCCCccccchhhHHHHHhhccCCCeeEECCCcchhHHHHHHHHH
Confidence            454433221 267899999                      99 999988888888877653

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=98.64  E-value=2.2e-07  Score=96.19  Aligned_cols=139  Identities=17%  Similarity=0.222  Sum_probs=88.3

Q ss_pred             CCCCCCCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhh--ccC-CCCCCCCHHHHHHHHHhh-cccCee
Q 014487          250 KGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSE--HRG-SYHPIMHLHERSLSVLAC-RYVDEV  325 (423)
Q Consensus       250 ~~~~~~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~--~Kg-~~~pi~~~~ER~~~v~~~-~~Vd~V  325 (423)
                      +.|....+++++.|+|||+|.||+.++++|.+++|.|+|+|.++..-.+  .++ +....++.++|..+++.. +..+.|
T Consensus        46 ~~~~~~~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v  125 (399)
T PRK08099         46 EFPRQMKKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNI  125 (399)
T ss_pred             ChhhhcCcEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCE
Confidence            3344456799999999999999999999999999999999988752100  010 114678999999888664 776666


Q ss_pred             EEcC----CCC-ch----------HHHHhh--cCccEEEecCCcCCCCCCCCCCChHHHHHhCC-eEEEeCC---CCCCC
Q 014487          326 IIGA----PWE-VT----------KDMITT--FNICLVVHGTVSETNTPLTGQSDPYEVAKSMG-IFQLLES---PKSIT  384 (423)
Q Consensus       326 vi~~----p~~-~~----------~~~i~~--~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G-~~~~i~~---~~~~S  384 (423)
                      .+..    +.. .+          ...+..  .++|+++-|.++..        +.|  .+..| .++.++.   ..++|
T Consensus       126 ~v~~~~~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~d~--------~~~--~~~~~~~~~~vd~~r~~~~iS  195 (399)
T PRK08099        126 KIHAFNEEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQDA--------PQY--EEHLGIETVLVDPKRTFMNIS  195 (399)
T ss_pred             EEEecCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCCCh--------HHH--HHhcCCceeeeccccccCCcC
Confidence            5531    100 00          111222  26788988876421        123  23333 3444543   24688


Q ss_pred             HHHHHHHHHhchHh
Q 014487          385 TTSVAQRIIANHEA  398 (423)
Q Consensus       385 tt~Ii~RI~~~~~~  398 (423)
                      +|.|.+--..+++.
T Consensus       196 aT~IR~~p~~~w~~  209 (399)
T PRK08099        196 GTQIRENPFRYWEY  209 (399)
T ss_pred             HHHHhhCHHHHHHh
Confidence            88888776665543

>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional

Probab=98.62  E-value=6.3e-08  Score=90.42  Aligned_cols=60  Identities=20%  Similarity=0.351  Sum_probs=51.5

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhh
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC  319 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~  319 (423)
                      ..++++.|.|.|||.||++.|++|.+.||+|||||.|...-...|   +|+ +..||.+|+...
T Consensus         4 yd~~v~iGRFQPfH~GHl~~I~~al~~~devII~IGSA~~s~t~~---NPF-Ta~ER~~MI~~a   63 (196)
T PRK13793          4 FDYLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMERNIK---NPF-LAIEREQMILSN   63 (196)
T ss_pred             eeEEEEEecCCCCcHHHHHHHHHHHHhCCEEEEEEccCCCCCCCC---CCC-CHHHHHHHHHHh
Confidence            467899999999999999999999999999999999876544443   566 999999888665

>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated

Probab=98.59  E-value=4.1e-07  Score=92.33  Aligned_cols=133  Identities=17%  Similarity=0.155  Sum_probs=82.5

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhc--CCEEEEEEecChhhhhccCCCCCCCCHHHHHHHH-HhhcccCeeEEcCC--
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVIIGAP--  330 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~--gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v-~~~~~Vd~Vvi~~p--  330 (423)
                      +++++++|+|||+|.||+.+.++|.+.  .|.+++..+.+.   ..|.. .+..+.++|+.|+ ++++..+.+.+.+.  
T Consensus         1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~---p~K~~-~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~   76 (342)
T PRK07152          1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYIN---PFKKK-QKASNGEHRLNMLKLALKNLPKMEVSDFEI   76 (342)
T ss_pred             CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCC---CCCCC-CCCCCHHHHHHHHHHHHhhCCCeEEeHHHH
Confidence            368999999999999999999999976  488888776553   33432 3455568999888 45566666666321  


Q ss_pred             ----CCchHHHH---hhcCcc---EEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCC--------------------C
Q 014487          331 ----WEVTKDMI---TTFNIC---LVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLES--------------------P  380 (423)
Q Consensus       331 ----~~~~~~~i---~~~~~d---~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~--------------------~  380 (423)
                          ...|.+.+   ++.-|+   +++-|.|...+ +..|. +...+.+.. .++.++|                    .
T Consensus        77 ~~~~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~~-l~~W~-~~~~l~~~~-~~iv~~R~g~~~~~~~~~~~i~~~~~~~  153 (342)
T PRK07152         77 KRQNVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEK-FKKWK-NIEEILKKV-QIVVFKRKKNINKKNLKKYNVLLLKNKN  153 (342)
T ss_pred             hCCCCCcHHHHHHHHHHhCCCCcEEEEecHHHhhh-ccccc-CHHHHHHhC-CEEEEECCCCCcccccccCcEEEecCCc
Confidence                12233433   333344   67889886554 21222 222332222 2222222                    2


Q ss_pred             CCCCHHHHHHHHHhc
Q 014487          381 KSITTTSVAQRIIAN  395 (423)
Q Consensus       381 ~~~Stt~Ii~RI~~~  395 (423)
                      .++|||+|.+|+..+
T Consensus       154 ~~iSST~IR~~~~~~  168 (342)
T PRK07152        154 LNISSTKIRKGNLLG  168 (342)
T ss_pred             cccCHHHHHHHHHcC
Confidence            469999999998765

>PRK13671 hypothetical protein; Provisional

Probab=98.59  E-value=1.4e-07  Score=93.49  Aligned_cols=85  Identities=19%  Similarity=0.289  Sum_probs=67.3

Q ss_pred             CeeccCCHHHHHHHHHHHhc--CCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcC-CCC-c-----
Q 014487          263 GAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGA-PWE-V-----  333 (423)
Q Consensus       263 G~FDl~H~GHi~~L~~A~~~--gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~-p~~-~-----  333 (423)
                      -+|||||.||+.++++|++.  +|.+|+....+.   ..||. .++++.++|+.+++.+ .||-|+--+ ++. .     
T Consensus         7 aeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~---~qrg~-pa~~~~~~R~~ma~~~-G~DLViELP~~~a~~sAe~F   81 (298)
T PRK13671          7 AEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY---TQRGE-IAVASFEKRKKIALKY-GVDKVIKLPFEYATQAAHIF   81 (298)
T ss_pred             eeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC---CCCCC-CCCCCHHHHHHHHHHc-CCCEEEeccHHHHhhchHHH
Confidence            37999999999999999997  588888877775   34564 4677999999999998 799998421 111 1     


Q ss_pred             ---hHHHHhhcCccEEEecCCc
Q 014487          334 ---TKDMITTFNICLVVHGTVS  352 (423)
Q Consensus       334 ---~~~~i~~~~~d~vv~G~d~  352 (423)
                         ...++..+++|.++-|+++
T Consensus        82 A~gaV~lL~~lgvd~l~FGsE~  103 (298)
T PRK13671         82 AKGAIKKLNKEKIDKLIFGSES  103 (298)
T ss_pred             HHHHHHHHHHcCCCEEEECCCC
Confidence               3457889999999999975

>cd02169 Citrate_lyase_ligase Citrate lyase ligase

Probab=98.59  E-value=5.2e-07  Score=89.84  Aligned_cols=131  Identities=15%  Similarity=0.157  Sum_probs=87.2

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh-hcccCeeEEcCCCC-
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWE-  332 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~-~~~Vd~Vvi~~p~~-  332 (423)
                      .++++-+-|+|||+|.||+.++++|.+.+|.++|.+...      +   .+.++.++|+.+++. ++..+.+.+....+ 
T Consensus       113 ~~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~~------~---~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~l  183 (297)
T cd02169         113 GKKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVSE------D---KSLFSFADRFKLVKKGTKHLKNVTVHSGGDY  183 (297)
T ss_pred             CCceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEcC------C---CCCCCHHHHHHHHHHHhCCCCCEEEEecCCe
Confidence            468999999999999999999999999999999888643      1   478899999988765 45444333321111 


Q ss_pred             -------------------------chHHHH----hhcCccEEEecCCcCCCCCCCCCCChHHHHH---hCCe-EEEeC-
Q 014487          333 -------------------------VTKDMI----TTFNICLVVHGTVSETNTPLTGQSDPYEVAK---SMGI-FQLLE-  378 (423)
Q Consensus       333 -------------------------~~~~~i----~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k---~~G~-~~~i~-  378 (423)
                                               .+.+|+    +++++..+|-|.|+....- ..++  ....+   ..|. +..++ 
T Consensus       184 ~v~~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~iL~~~l~~~~ivvG~Df~FG~~-r~G~--~~l~~~~~~~gf~v~~v~~  260 (297)
T cd02169         184 IISSATFPSYFIKEQDVVIKAQTALDARIFRKYIAPALNITKRYVGEEPFSRVT-AIYN--QTMQEELLSPAIEVIEIER  260 (297)
T ss_pred             eeccccChhhhcCChhHHHHHHhcCCHHHHHHHHHHHcCCcEEEEcCCCCCCCc-chhH--HHHHHhcccCCCEEEEecc
Confidence                                     122333    4578999999999866531 1222  22222   2242 23332 


Q ss_pred             ---CCCCCCHHHHHHHHHhchH
Q 014487          379 ---SPKSITTTSVAQRIIANHE  397 (423)
Q Consensus       379 ---~~~~~Stt~Ii~RI~~~~~  397 (423)
                         ....+|||.|.+-|.+..-
T Consensus       261 ~~~~g~~ISST~IR~~l~~G~v  282 (297)
T cd02169         261 KKYDGQPISASTVRQLLKEGNL  282 (297)
T ss_pred             cccCCcEEcHHHHHHHHHcCCH
Confidence               2356899999888766553

Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.

>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]

Probab=98.57  E-value=6e-07  Score=84.25  Aligned_cols=135  Identities=17%  Similarity=0.174  Sum_probs=83.5

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcC--CEEEEEEecChhhhhccCCCCCCCCHHHHHHHH-HhhcccCeeEEc---
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVIIG---  328 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~g--d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v-~~~~~Vd~Vvi~---  328 (423)
                      ++++++.+|+|||.|.||+.+.++|.+..  |.|+.-.+...   .+|.. .+.-+.++|+.|+ ++|+.++...+.   
T Consensus         2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~---p~k~~-~~~a~~~~R~~Ml~la~~~~~~~~v~~~e   77 (197)
T COG1057           2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVP---PHKKK-KELASAEHRLAMLELAIEDNPRFEVSDRE   77 (197)
T ss_pred             CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCC---CCCCC-ccCCCHHHHHHHHHHHHhcCCCcceeHHH
Confidence            47899999999999999999999998765  55555544332   33432 5789999999776 567766653331   


Q ss_pred             --C-CCCchHH---HHh-hcCccE---EEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCC------------------
Q 014487          329 --A-PWEVTKD---MIT-TFNICL---VVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESP------------------  380 (423)
Q Consensus       329 --~-p~~~~~~---~i~-~~~~d~---vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~------------------  380 (423)
                        . ....|.+   .++ .++||.   ++-|.|...+ +..|. + ....-....++.++|+                  
T Consensus        78 ~~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~-l~~W~-~-~~ell~~~~~vv~~Rp~~~~~~~~~~~~~~~~~~  154 (197)
T COG1057          78 IKRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLAS-LPKWY-D-WDELLKLVTFVVAPRPGYGELELSLLSSGGAIIL  154 (197)
T ss_pred             HHcCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhh-hhhhh-h-HHHHHHhCCEEEEecCCchhhhhhhhcCCceEEE
Confidence              1 1222333   344 667873   6889875443 21111 1 1112223333333322                  


Q ss_pred             -----CCCCHHHHHHHHHhch
Q 014487          381 -----KSITTTSVAQRIIANH  396 (423)
Q Consensus       381 -----~~~Stt~Ii~RI~~~~  396 (423)
                           .++|+|.|.+|+...+
T Consensus       155 ~~~~~~~ISSt~IR~~~~~~~  175 (197)
T COG1057         155 LDLPRLDISSTEIRERIRRGA  175 (197)
T ss_pred             ccCccccCchHHHHHHHhCCC
Confidence                 2599999999997754

>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase

Probab=98.55  E-value=2e-07  Score=94.22  Aligned_cols=64  Identities=17%  Similarity=0.229  Sum_probs=54.3

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh-hcccCeeEE
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVII  327 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~-~~~Vd~Vvi  327 (423)
                      +.+++.+.|+|||||.||+.++++|.+++|.++|+|..+      +   +++++.++|..+++. ++..+.|.+
T Consensus       138 ~~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~~~------~---~~~f~~~~R~~~v~~~~~~~~nv~v  202 (332)
T TIGR00124       138 GNKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVVKE------D---ASLFSYDERFALVKQGIQDLSNVTV  202 (332)
T ss_pred             CCcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEEeC------C---CCCCCHHHHHHHHHHHhcCCCCEEE
Confidence            468999999999999999999999999999999999732      2   579999999977755 566666555

ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=98.55  E-value=1.8e-07  Score=94.30  Aligned_cols=68  Identities=16%  Similarity=0.164  Sum_probs=54.3

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh-hcccCe-eEE
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDE-VII  327 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~-~~~Vd~-Vvi  327 (423)
                      ++++++.|+|||+|.||+.++++|.+++|+|+|.+.+..   .++.+ .+.++.++|+.+++. |+.... |.+
T Consensus         1 ~~i~i~~GsFdP~H~GHl~ii~~a~~~~d~v~v~~~~~~---~~~~~-~~~~~~~~R~~~l~~~~~~~~~~v~v   70 (325)
T TIGR01526         1 KTIGVVFGKFYPLHTGHIYLIYEAFSKVDELHIVVGSLF---YDSKA-KRPPPVQDRLRWLREIFKYQKNQIFI   70 (325)
T ss_pred             CcEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCC---cCccC-CCCCCHHHHHHHHHHHhccCCCeEEE
Confidence            358999999999999999999999999999999998632   12111 578899999988854 577766 554

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=98.49  E-value=2.5e-07  Score=93.27  Aligned_cols=57  Identities=25%  Similarity=0.159  Sum_probs=49.3

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhcc-CCCCCCcHHHHHHHHhc
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KGPPVLSMEERLALVSG  125 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~-K~~pi~t~eER~~~l~~  125 (423)
                      ++++++|+|||+|.||+.++++|.+++|+|+|++.+..   ++ |..+.++.++|++|++.
T Consensus         2 ~i~i~~GsFdP~H~GHl~ii~~a~~~~d~v~v~~~~~~---~~~~~~~~~~~~~R~~~l~~   59 (325)
T TIGR01526         2 TIGVVFGKFYPLHTGHIYLIYEAFSKVDELHIVVGSLF---YDSKAKRPPPVQDRLRWLRE   59 (325)
T ss_pred             cEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCC---cCccCCCCCCHHHHHHHHHH
Confidence            47899999999999999999999999999999997743   22 33678899999999975

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]

Probab=98.49  E-value=8.6e-07  Score=81.05  Aligned_cols=129  Identities=17%  Similarity=0.156  Sum_probs=79.3

Q ss_pred             CCeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhc-Cc--ccc---EEEecCC
Q 014487           64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LK--WVD---EVIANAP  137 (423)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~--~VD---~vi~~~p  137 (423)
                      ++++.++.|.|-++|.||+.++++|.+..|+|+|++.|+..-...  +.-+|..||..|++. ++  ++|   .++.-.+
T Consensus         2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa~~~~t~--~nPfTagER~~mi~~~L~~~~~~~r~~~~~v~d   79 (172)
T COG1056           2 RMKRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSAQESHTL--KNPFTAGERIPMIRDRLREAGLDLRVYLRPVFD   79 (172)
T ss_pred             CceEEEEEeccCCccHhHHHHHHHHHHhCCEEEEEEccCcccccc--cCCCCccchhHHHHHHHHhcCCCceEEEEecCc
Confidence            467899999999999999999999999999999999998853322  356888999999884 22  334   2222222


Q ss_pred             ccccHHHHHHHHhhcCccEEEE--cCCCCCCCCCCcHHHHHHhCCc-EEEecc--CCCCCHHHHHHHHHhc
Q 014487          138 YAITEQFMNRLFNEHKIDYIIH--GDDPCLLPDGTDAYALAKKVGR-YKQIKR--TEGVSSTDIVGRILSS  203 (423)
Q Consensus       138 ~~~~~efl~~ll~~~~~d~VV~--G~D~~~g~~g~~~~~~lk~~g~-~~~v~r--~~~iSST~Ir~rI~~~  203 (423)
                      +..+.-++ ..++..-|.+-++  |+.|        ...+....|. ....+-  ....|.|.|+.+|+.+
T Consensus        80 ~~~n~i~v-~~v~~~~p~~~~~~~~n~~--------v~~lf~~~~~~~~~p~~f~~~e~~~t~ir~~~~~~  141 (172)
T COG1056          80 IEYNDIWV-AYVEDLVPPFDVVYTWNPW--------VARLFHEKGEKVYYPPMFPRWEYSGTAIRRKMLGG  141 (172)
T ss_pred             cccchhhH-HHHhhcCCCccccCCCCHH--------HHHHHhhcCceeecCCcccccccccchHHHHhhcC
Confidence            33332333 2223333332222  3222        1222223332 222222  2358999999998864

>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain

Probab=98.47  E-value=2e-06  Score=79.87  Aligned_cols=123  Identities=14%  Similarity=0.115  Sum_probs=78.6

Q ss_pred             CeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhh-cccCeeEEcC-------CCC--
Q 014487          263 GAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGA-------PWE--  332 (423)
Q Consensus       263 G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~-~~Vd~Vvi~~-------p~~--  332 (423)
                      -.|||+|.||++++++|.+.+|.++|++.+.      +   .+.++.++|+.+++.. +..+.|.+..       |..  
T Consensus         6 ~~~DPiH~GHl~i~~~a~~~~d~~~V~v~p~------~---~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~~   76 (182)
T smart00764        6 MNANPFTLGHRYLVEQAAAECDWVHLFVVSE------D---ASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATFP   76 (182)
T ss_pred             ECCCCCCHHHHHHHHHHHHHCCceEEEEEeC------C---CCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccCh
Confidence            3699999999999999999999999888754      1   3567999999888653 5444333211       111  


Q ss_pred             -----------------chHHHH----hhcCccEEEecCCcCCCCCCCCCCChHHHH--HhCCe-EEEeCC----CCCCC
Q 014487          333 -----------------VTKDMI----TTFNICLVVHGTVSETNTPLTGQSDPYEVA--KSMGI-FQLLES----PKSIT  384 (423)
Q Consensus       333 -----------------~~~~~i----~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~--k~~G~-~~~i~~----~~~~S  384 (423)
                                       .+++|+    +++++..++.|.|+..+.- ..+ +...+.  ...|. ...+++    ...+|
T Consensus        77 ~~~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~~-~~G-~~~~L~~~~~~g~~v~~I~r~~~~g~~iS  154 (182)
T smart00764       77 SYFLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVT-AIY-NQTMKQTLLSPAIEVVEIERKKANGQPIS  154 (182)
T ss_pred             hhhcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCCC-Ccc-CHHHHHHHhhCCCEEEEEecccCCCcEEC
Confidence                             122333    4579999999999876632 222 222211  22342 344443    35589


Q ss_pred             HHHHHHHHHhch
Q 014487          385 TTSVAQRIIANH  396 (423)
Q Consensus       385 tt~Ii~RI~~~~  396 (423)
                      +|.|.+-|.+..
T Consensus       155 ST~IR~~L~~G~  166 (182)
T smart00764      155 ASTVRKLLKEGN  166 (182)
T ss_pred             HHHHHHHHHcCC
Confidence            999988775433

Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.

>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]

Probab=98.32  E-value=8e-07  Score=81.25  Aligned_cols=62  Identities=24%  Similarity=0.276  Sum_probs=52.8

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh-hc
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CR  320 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~-~~  320 (423)
                      +++.+++-|.|.|||.||+..+++|.+..|.|||+|.||+.-...|   +|+ +..||..++.. ++
T Consensus         2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa~~~~t~~---nPf-TagER~~mi~~~L~   64 (172)
T COG1056           2 RMKRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSAQESHTLK---NPF-TAGERIPMIRDRLR   64 (172)
T ss_pred             CceEEEEEeccCCccHhHHHHHHHHHHhCCEEEEEEccCccccccc---CCC-CccchhHHHHHHHH
Confidence            4678999999999999999999999999999999999998654444   454 88999988874 44

>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=98.31  E-value=6.5e-06  Score=79.79  Aligned_cols=60  Identities=17%  Similarity=0.213  Sum_probs=47.5

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcC--CEEEEEEecChhhhhccCCCCCCCCHHHHHHHHH-hhc
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACR  320 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~g--d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~-~~~  320 (423)
                      .++|++++|+|||.|.||+.+.++|.+..  |.+++..+.+.   -.|   .+..+.+.|+.|++ +++
T Consensus        21 ~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~p---p~K---~~~~~~~~Rl~M~~lAi~   83 (243)
T PRK06973         21 PRRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQP---WQK---ADVSAAEHRLAMTRAAAA   83 (243)
T ss_pred             CceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcC---CCC---CCCCCHHHHHHHHHHHHH
Confidence            35799999999999999999999998764  78877776653   234   36779999998885 444

>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]

Probab=98.25  E-value=2.7e-06  Score=80.95  Aligned_cols=130  Identities=26%  Similarity=0.289  Sum_probs=82.4

Q ss_pred             CCCCeEEEEecccCcCcHHHHHHHHHHHHhc-CeeEEEEecchhhhccCC--CCCCcHHHHHHHHhc----Cc---cccE
Q 014487           62 KKKRVRVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKG--PPVLSMEERLALVSG----LK---WVDE  131 (423)
Q Consensus        62 ~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~----~~---~VD~  131 (423)
                      ..+..++..+|+||-+|.||.-+|..|..++ ++++|||+.|+.+.. |.  ..|-|.++|.+.+..    ++   .++.
T Consensus       139 a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~k-K~~~Eliepie~R~~~V~~Fl~~IKp~l~~~~  217 (293)
T KOG3351|consen  139 ANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKK-KVLKELIEPIEERKEHVSNFLKSIKPDLNVRV  217 (293)
T ss_pred             hhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHH-hHHHHHhhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            3446789999999999999999999999998 899999998887642 33  468889999998875    22   1233


Q ss_pred             EEecCCccccHHHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCC----cEEEeccCC---CCCHHHHHHHHH
Q 014487          132 VIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKRTE---GVSSTDIVGRIL  201 (423)
Q Consensus       132 vi~~~p~~~~~efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g----~~~~v~r~~---~iSST~Ir~rI~  201 (423)
                      +=.-.||..+-.       --..+++|+...-..|...-. ...+ +.|    .+..+.-..   .+|+|++++...
T Consensus       218 vpi~Dp~GPt~~-------d~elE~lVVS~ET~~Ga~aVN-r~R~-E~glseLai~vVell~~~~kls~t~~~~~kv  285 (293)
T KOG3351|consen  218 VPIHDPFGPTIT-------DPELEALVVSEETKTGATAVN-RKRV-ERGLSELAIYVVELLYDAQKLSSTENRELKV  285 (293)
T ss_pred             EecccCCCCCcc-------CCcceEEEEeeccccchhhhh-HHHH-HcCCchheEEEEeeccChhhcchhHHHHhhh
Confidence            323345543311       113567787766444432221 1111 122    134444433   389999886543

>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase

Probab=98.25  E-value=6.6e-06  Score=81.64  Aligned_cols=135  Identities=13%  Similarity=0.143  Sum_probs=82.5

Q ss_pred             EEEcCeeccCCHHHHHHHHHHHhcCC-----EEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCC--
Q 014487          259 VYIDGAFDLFHAGHVEILKKARQLGD-----FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW--  331 (423)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd-----~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~--  331 (423)
                      +++-|.||-+|.||..+|++|++.+.     -.++........--......++++.+||...++++. ||.+++-+..  
T Consensus         1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~G-vd~~~~~~F~~~   79 (288)
T TIGR00083         1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIKG-VEQLLVVVFDEE   79 (288)
T ss_pred             CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHcC-CCEEEEeCCCHH
Confidence            46779999999999999998886542     334444333221111111123999999999999985 9988885421  


Q ss_pred             ---CchHHHHh-----hcCccEEEecCCcCCCCCCCCCCChHHH---HHhCCeEEEe-C---CCCCCCHHHHHHHHHhch
Q 014487          332 ---EVTKDMIT-----TFNICLVVHGTVSETNTPLTGQSDPYEV---AKSMGIFQLL-E---SPKSITTTSVAQRIIANH  396 (423)
Q Consensus       332 ---~~~~~~i~-----~~~~d~vv~G~d~~~~~~~~~~~d~~~~---~k~~G~~~~i-~---~~~~~Stt~Ii~RI~~~~  396 (423)
                         ..++++++     ++++..+|.|.|+.-.--  ..-+...+   .+..|..+.+ +   ....+|||.|.+-|.+..
T Consensus        80 ~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~FG~~--~~G~~~~L~~~~~~~g~~v~~~~~~~~~~~ISST~IR~~l~~G~  157 (288)
T TIGR00083        80 FANLSALQFIDQLIVKHLHVKFLVVGDDFRFGHD--RQGDFLLLQLFGNTTIFCVIVKQLFCQDIRISSSAIRQALKNGD  157 (288)
T ss_pred             HHcCCHHHHHHHHHHhccCCcEEEECCCccCCCC--CCCCHHHHHHhccccCcEEEEeccccCCCeECHHHHHHHHHcCC
Confidence               13344543     468999999999875521  12222222   2233432222 2   225699999988775544

multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).

>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2

Probab=98.18  E-value=7.7e-06  Score=74.17  Aligned_cols=100  Identities=25%  Similarity=0.227  Sum_probs=63.4

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcC---CEEEEEEecChhhhhc---cCCCCCCCCHHHHHHHHHhhcccCeeEEc
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLG---DFLLVGIYTDQIVSEH---RGSYHPIMHLHERSLSVLACRYVDEVIIG  328 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~g---d~LiVgv~~D~~v~~~---Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~  328 (423)
                      .++.+++-|.||-+|.||-.+|++|.+.+   +...+.++=|..-...   ......+++.+||...+.++. ||.+++-
T Consensus         4 ~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~G-vd~~~~~   82 (157)
T PF06574_consen    4 NKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLG-VDYVIVI   82 (157)
T ss_dssp             -S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTT-ESEEEEE
T ss_pred             CCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcC-CCEEEEe
Confidence            46789999999999999999999988876   4344444444321111   122356999999999999985 9988774


Q ss_pred             CC-----CCchHHHHh-----hcCccEEEecCCcCCC
Q 014487          329 AP-----WEVTKDMIT-----TFNICLVVHGTVSETN  355 (423)
Q Consensus       329 ~p-----~~~~~~~i~-----~~~~d~vv~G~d~~~~  355 (423)
                      +.     ...++++++     ++++..+|.|.|+.-.
T Consensus        83 ~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG  119 (157)
T PF06574_consen   83 PFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFG  119 (157)
T ss_dssp             -CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EES
T ss_pred             cchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCC
Confidence            32     223556665     4689999999998655

7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.

>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]

Probab=98.14  E-value=3e-06  Score=80.64  Aligned_cols=84  Identities=32%  Similarity=0.454  Sum_probs=62.9

Q ss_pred             CCCCCCCeEEEEcCeeccCCHHHHHHHHHHHhcC-CEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh----hc---c
Q 014487          250 KGPGPNARVVYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA----CR---Y  321 (423)
Q Consensus       250 ~~~~~~~~iv~~~G~FDl~H~GHi~~L~~A~~~g-d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~----~~---~  321 (423)
                      .++..+..++.++|+||=+|.||-=+|..|..++ |.|||||++|+.+.+.+-+ .-|-|.+||..-|..    ++   .
T Consensus       136 ~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~kK~~~-Eliepie~R~~~V~~Fl~~IKp~l~  214 (293)
T KOG3351|consen  136 SGPANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKKKVLK-ELIEPIEERKEHVSNFLKSIKPDLN  214 (293)
T ss_pred             ccchhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHHhHHH-HHhhhHHHHHHHHHHHHHhcCCCce
Confidence            3444556789999999999999999999999998 8999999999987654322 357789999966654    33   2


Q ss_pred             cCeeEEcCCCCch
Q 014487          322 VDEVIIGAPWEVT  334 (423)
Q Consensus       322 Vd~Vvi~~p~~~~  334 (423)
                      |+.|=+-+|++++
T Consensus       215 ~~~vpi~Dp~GPt  227 (293)
T KOG3351|consen  215 VRVVPIHDPFGPT  227 (293)
T ss_pred             EEEEecccCCCCC
Confidence            4445555666543

>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic

Probab=98.11  E-value=2.2e-05  Score=75.33  Aligned_cols=69  Identities=16%  Similarity=0.114  Sum_probs=45.8

Q ss_pred             EEEEcCeeccCCHHHHHHHHHHHhcCC--E--EEEEEe-cChhhhhccCCCCCCCCHHHHHHHHH-hhcccCeeEEcC
Q 014487          258 VVYIDGAFDLFHAGHVEILKKARQLGD--F--LLVGIY-TDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGA  329 (423)
Q Consensus       258 iv~~~G~FDl~H~GHi~~L~~A~~~gd--~--LiVgv~-~D~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~Vd~Vvi~~  329 (423)
                      +.+++|+|||+|.||+.++++|.+..+  .  .+|.+. .=...+..|   .+..+.++|+.|++ ++...+.+.+.+
T Consensus         2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k---~~~~~~~~Rl~Ml~lai~~~~~~~v~~   76 (225)
T cd09286           2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGK---KGLASAKHRVAMCRLAVQSSDWIRVDD   76 (225)
T ss_pred             EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCC---CCCCCHHHHHHHHHHHHccCCCEEEEe
Confidence            568899999999999999999987653  2  222211 100011122   46779999998885 677666666643

Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.

>COG0196 RibF FAD synthase [Coenzyme metabolism]

Probab=97.97  E-value=0.00011  Score=73.44  Aligned_cols=139  Identities=19%  Similarity=0.214  Sum_probs=88.7

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCC--EE-EEEEecChhhhhccCC---CCCCCCHHHHHHHHHhhcccCeeEEcC
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGD--FL-LVGIYTDQIVSEHRGS---YHPIMHLHERSLSVLACRYVDEVIIGA  329 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd--~L-iVgv~~D~~v~~~Kg~---~~pi~~~~ER~~~v~~~~~Vd~Vvi~~  329 (423)
                      ...+++-|.||=+|.||-.+|++|++.+.  .+ .+.++-++--.....+   ..-++++++|+..+..+. ||.+++.+
T Consensus        15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~g-vd~~~v~~   93 (304)
T COG0196          15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYG-VDALVVLD   93 (304)
T ss_pred             CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhcC-CcEEEEEe
Confidence            46799999999999999999999886542  12 4444444333333221   112899999999999997 99888743


Q ss_pred             CC-----CchHHHHh----hcCccEEEecCCcCCCCCCCCCCChHHHHHhCC---e-EEEeCCC----CCCCHHHHHHHH
Q 014487          330 PW-----EVTKDMIT----TFNICLVVHGTVSETNTPLTGQSDPYEVAKSMG---I-FQLLESP----KSITTTSVAQRI  392 (423)
Q Consensus       330 p~-----~~~~~~i~----~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G---~-~~~i~~~----~~~Stt~Ii~RI  392 (423)
                      ..     -...++++    ++++..+|-|.|+.-..   ....-....+..|   . ...++..    ..+|||.|.+-+
T Consensus        94 F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk---~~~g~~~~L~~~~~~gf~v~~v~~~~~~~~~iSSt~IR~~L  170 (304)
T COG0196          94 FDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGK---GRQGNAELLRELGQKGFEVTIVPKINEEGIRISSTAIRQAL  170 (304)
T ss_pred             CCHhHhhCCHHHHHHHHHhccCCcEEEEecccccCC---CCCCCHHHHHHhccCCceEEEeccEecCCcEEchHHHHHHH
Confidence            21     12344554    88999999999986542   1211123333333   2 3344432    248999998877


Q ss_pred             HhchHh
Q 014487          393 IANHEA  398 (423)
Q Consensus       393 ~~~~~~  398 (423)
                      .+..-.
T Consensus       171 ~~gdl~  176 (304)
T COG0196         171 REGDLE  176 (304)
T ss_pred             hcCCHH
Confidence            554433

>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6

Probab=97.93  E-value=9.1e-05  Score=67.88  Aligned_cols=124  Identities=20%  Similarity=0.211  Sum_probs=83.6

Q ss_pred             ecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhc-Cccc---------cEEEecCCccc
Q 014487           71 DGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWV---------DEVIANAPYAI  140 (423)
Q Consensus        71 ~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~V---------D~vi~~~p~~~  140 (423)
                      .-+-+|++.||+-|+++|.+.+|.|.|-|.+.+       .-+++.++|++|++. ++..         |++|..+.|.-
T Consensus         5 VMNaNPFT~GH~yLiE~Aa~~~d~l~vFVV~eD-------~S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFPs   77 (182)
T PF08218_consen    5 VMNANPFTLGHRYLIEQAAKECDWLHVFVVSED-------RSLFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFPS   77 (182)
T ss_pred             EEcCCCCccHHHHHHHHHHHhCCEEEEEEEccc-------cCcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccChh
Confidence            346789999999999999999999887777654       468999999999985 2222         34444333210


Q ss_pred             c---H--------------HHHHHHHhhcCccEEEEcCCCCCCCCCCcHHH-----HHHhC-CcEEEeccCC----CCCH
Q 014487          141 T---E--------------QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYA-----LAKKV-GRYKQIKRTE----GVSS  193 (423)
Q Consensus       141 ~---~--------------efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~-----~lk~~-g~~~~v~r~~----~iSS  193 (423)
                      .   +              -|.+.+...+++..-.+|+.+..-..  ..|+     .|... -++.+++|.+    .||-
T Consensus        78 YFlK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~vT--~~YN~~M~~~Lp~~gi~v~ei~R~~~~g~~ISA  155 (182)
T PF08218_consen   78 YFLKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPVT--RIYNEAMKEILPPYGIEVVEIPRKEINGEPISA  155 (182)
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHHH--HHHHHHHHHhccccCCEEEEEecccCCCcEEcH
Confidence            0   0              23333445688999999988643221  2232     33334 3688999953    3999


Q ss_pred             HHHHHHHHhc
Q 014487          194 TDIVGRILSS  203 (423)
Q Consensus       194 T~Ir~rI~~~  203 (423)
                      |..|+.|.++
T Consensus       156 S~VR~~l~~~  165 (182)
T PF08218_consen  156 SRVRKLLKEG  165 (182)
T ss_pred             HHHHHHHHcC
Confidence            9999999865

2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity

>TIGR00018 panC pantoate--beta-alanine ligase

Probab=97.82  E-value=4e-05  Score=75.69  Aligned_cols=64  Identities=30%  Similarity=0.301  Sum_probs=53.6

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhcc-CC--CCCCcHHHHHHHHhcCccccEEEe
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KG--PPVLSMEERLALVSGLKWVDEVIA  134 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~-K~--~pi~t~eER~~~l~~~~~VD~vi~  134 (423)
                      -|.+.|+   +|.||+.||++|++.++.++|.+..++.-... ..  +.+.+.++|.++++.+ +||.++.
T Consensus        26 ~VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~   92 (282)
T TIGR00018        26 FVPTMGN---LHDGHMSLIDRAVAENDVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL-GVDVVFA   92 (282)
T ss_pred             EEECCCc---ccHHHHHHHHHHHHhCCeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc-CCCEEEC
Confidence            4678999   99999999999999999888888888754222 21  4688999999999998 9999987

This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.

>PRK13670 hypothetical protein; Provisional

Probab=97.75  E-value=6.4e-05  Score=77.64  Aligned_cols=85  Identities=20%  Similarity=0.313  Sum_probs=63.2

Q ss_pred             CeeccCCHHHHHHHHHHHhcCC-EEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCC---CchHH--
Q 014487          263 GAFDLFHAGHVEILKKARQLGD-FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW---EVTKD--  336 (423)
Q Consensus       263 G~FDl~H~GHi~~L~~A~~~gd-~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~---~~~~~--  336 (423)
                      =-||+||.||..+|++|++.+. .++++|-+-..+.+  |. .++++..+|+.+++.+. ||.|+.-+..   ..+.+  
T Consensus         8 aEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qr--g~-p~i~~~~~R~~~a~~~G-vD~vielpf~~a~~sae~F~   83 (388)
T PRK13670          8 VEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQR--GE-PAIVDKWTRAKMALENG-VDLVVELPFLYSVQSADFFA   83 (388)
T ss_pred             eeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCC--CC-CCCCCHHHHHHHHHHcC-CCEEEEeCCchHhCCHHHHH
Confidence            3599999999999999997542 35555667766654  54 35999999999999985 9998885431   12223  


Q ss_pred             -----HHhhcCccEEEecCC
Q 014487          337 -----MITTFNICLVVHGTV  351 (423)
Q Consensus       337 -----~i~~~~~d~vv~G~d  351 (423)
                           ++..++++.+|.|.|
T Consensus        84 ~~aV~iL~~l~v~~lv~G~e  103 (388)
T PRK13670         84 EGAVSILDALGVDSLVFGSE  103 (388)
T ss_pred             HhHHHHHHHcCCCEEEEcCC
Confidence                 345588999999988

>PLN02660 pantoate--beta-alanine ligase

Probab=97.74  E-value=6.7e-05  Score=74.07  Aligned_cols=64  Identities=27%  Similarity=0.309  Sum_probs=53.8

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhcc-CC--CCCCcHHHHHHHHhcCccccEEEe
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KG--PPVLSMEERLALVSGLKWVDEVIA  134 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~-K~--~pi~t~eER~~~l~~~~~VD~vi~  134 (423)
                      -|.+.|+   +|.||+.||++|++.++.++|.+..+|.-... ..  +.+.|.++|.++++.+ +||.++.
T Consensus        25 fVpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~   91 (284)
T PLN02660         25 LVPTMGY---LHEGHLSLVRAARARADVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL-GVDAVFN   91 (284)
T ss_pred             EEEcCch---hhHHHHHHHHHHHHhCCEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc-CCCEEEC
Confidence            5788898   99999999999999999888888888764221 22  5688999999999997 8999886

>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function

Probab=97.55  E-value=0.00012  Score=75.59  Aligned_cols=90  Identities=27%  Similarity=0.431  Sum_probs=38.0

Q ss_pred             EEEecccCcCcHHHHHHHHHHHHhc--CeeEEEEecchhhhccCC-CCCCcHHHHHHHHhcCccccEEEecCCcccc---
Q 014487           68 VYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSGLKWVDEVIANAPYAIT---  141 (423)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~---  141 (423)
                      +=++-=|+|+|.||+-.|+++++..  |. +|+|-|-..+ + .| +.+++--.|.++.-.+ ++|.|++ .|+.+.   
T Consensus         4 ~GIIaEYNPFHnGH~y~i~~~k~~~~ad~-ii~vMSGnFv-Q-RGEPAi~dKw~RA~~AL~~-GaDLViE-LP~~~a~qs   78 (388)
T PF05636_consen    4 VGIIAEYNPFHNGHLYQIEQAKKITGADV-IIAVMSGNFV-Q-RGEPAIIDKWTRAEMALKN-GADLVIE-LPVVYALQS   78 (388)
T ss_dssp             ---E---TT--HHHHHHHHHHH---TSSE-EEEEE--TTS-B-TSSB-SS-HHHHHHHHHHH-T-SEEEE----G-----
T ss_pred             CCeEEeECCccHHHHHHHHHHhccCCCCE-EEEEECCCcc-c-CCCeeeCCHHHHHHHHHHc-CCCEEEE-CCCcccccc
Confidence            3344469999999999999999874  65 4455555433 2 44 7799999999998776 9999998 666544   


Q ss_pred             -HHHHH---HHHhhcCccEEEEcCC
Q 014487          142 -EQFMN---RLFNEHKIDYIIHGDD  162 (423)
Q Consensus       142 -~efl~---~ll~~~~~d~VV~G~D  162 (423)
                       +.|-.   .++..++||+++.|..
T Consensus        79 A~~FA~gaV~lL~~lgvd~l~FGsE  103 (388)
T PF05636_consen   79 AEYFARGAVSLLNALGVDYLSFGSE  103 (388)
T ss_dssp             -------------------------
T ss_pred             ccccccccccccccccccccccccc
Confidence             24432   2677889999998864

; PDB: 3GMI_A.

>COG1323 Predicted nucleotidyltransferase [General function prediction only]

Probab=97.36  E-value=0.00048  Score=70.00  Aligned_cols=88  Identities=22%  Similarity=0.234  Sum_probs=63.1

Q ss_pred             ecccCcCcHHHHHHHHHHHHhc--CeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEecCCccccH---HH-
Q 014487           71 DGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITE---QF-  144 (423)
Q Consensus        71 ~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~~---ef-  144 (423)
                      +--||++|.||+.+|++|+++.  |..++++..| .. ++..+++.+..+|.++.-+. ++|.||+ .|+.++-   ++ 
T Consensus         7 i~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgd-f~-qRgepai~~k~~r~~~aL~~-g~D~VIe-lP~~~s~q~a~~f   82 (358)
T COG1323           7 IAEYNPFHNGHQYHINKAREEFKGDEIIAVMSGD-FT-QRGEPAIGHKWERKKMALEG-GADLVIE-LPLERSGQGAPYF   82 (358)
T ss_pred             eeecCcccccHHHHHHHHHHhccCCceEEeeecc-hh-hcCCCccccHHHHHhhhhhc-CceEEEE-cceEEecCCCchh
Confidence            3359999999999999999853  5555555444 22 23337899999999999886 8999998 6765541   22 


Q ss_pred             HH---HHHhhcCccEEEEcCC
Q 014487          145 MN---RLFNEHKIDYIIHGDD  162 (423)
Q Consensus       145 l~---~ll~~~~~d~VV~G~D  162 (423)
                      ..   .++..+++|.|+.|..
T Consensus        83 a~~av~il~~l~~~~i~fgse  103 (358)
T COG1323          83 ATRAVRILNALGGDDIAFGSP  103 (358)
T ss_pred             hHHHHHHHHhcCCCeEEEeCC
Confidence            21   2556788888887743

>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]

Probab=97.34  E-value=0.0049  Score=60.68  Aligned_cols=136  Identities=18%  Similarity=0.160  Sum_probs=91.3

Q ss_pred             CCCCCeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhc----------Ccccc
Q 014487           61 GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG----------LKWVD  130 (423)
Q Consensus        61 ~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~----------~~~VD  130 (423)
                      +....++.-+.-+-+|+-.||+-|++||.+.||.|.+-+.+++       ...+++++|.++++.          .++-|
T Consensus       141 r~~gkkIgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFvV~eD-------~S~f~y~~R~~Lv~~G~~~l~Nvt~Hsgsd  213 (352)
T COG3053         141 RHPGKKIGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFVVKED-------SSLFPYEDRLDLVKKGTADLPNVTVHSGSD  213 (352)
T ss_pred             ccCCCeeEEEEEeCCCccchhHHHHHHHHhhCCEEEEEEEecc-------cccCCHHHHHHHHHHhhccCCceEEecCCC
Confidence            3445678888889999999999999999999998866665544       357899999999974          23456


Q ss_pred             EEEecCCcccc---H--------------HHHHHHHhhcCccEEEEcCCCCCCCCC---CcHHHHHHhCC------cEEE
Q 014487          131 EVIANAPYAIT---E--------------QFMNRLFNEHKIDYIIHGDDPCLLPDG---TDAYALAKKVG------RYKQ  184 (423)
Q Consensus       131 ~vi~~~p~~~~---~--------------efl~~ll~~~~~d~VV~G~D~~~g~~g---~~~~~~lk~~g------~~~~  184 (423)
                      ++|..+.|.-.   +              -|-+.+...+++..=.+|..+-.-...   .....+|.+.+      .+++
T Consensus       214 YiISrATFP~YFiKeq~vv~~s~t~iDl~iFr~~iA~aLgIThRfVG~EP~c~vT~~YNq~M~~~L~~~~~~~p~I~vve  293 (352)
T COG3053         214 YIISRATFPAYFIKEQSVVNDSQTEIDLKIFRKYIAPALGITHRFVGTEPFCRVTAIYNQQMRYWLEDPTISAPPIEVVE  293 (352)
T ss_pred             eEEEecccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcceeeecCCCCcHHHHHHHHHHHHHHhccCCCCCceEEEE
Confidence            77765554211   0              122224456788888889875332111   11123444433      3677


Q ss_pred             eccC----CCCCHHHHHHHHHhc
Q 014487          185 IKRT----EGVSSTDIVGRILSS  203 (423)
Q Consensus       185 v~r~----~~iSST~Ir~rI~~~  203 (423)
                      ++|.    ..||.|..|+.+.+.
T Consensus       294 i~Rk~~~~~~ISAS~VR~~l~~~  316 (352)
T COG3053         294 IERKKYQEMPISASRVRQLLAKN  316 (352)
T ss_pred             eehhhhcCCcccHHHHHHHHHhC
Confidence            8884    359999999998753

>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase

Probab=97.32  E-value=0.00063  Score=65.66  Aligned_cols=71  Identities=17%  Similarity=0.279  Sum_probs=45.4

Q ss_pred             CCCeEEEEcCeeccCCHHHHHHHHHHHhcC--C-EEEEEEecChh-hhhccCCCCCCCCHHHHHHHHH-hhcccCeeEE
Q 014487          254 PNARVVYIDGAFDLFHAGHVEILKKARQLG--D-FLLVGIYTDQI-VSEHRGSYHPIMHLHERSLSVL-ACRYVDEVII  327 (423)
Q Consensus       254 ~~~~iv~~~G~FDl~H~GHi~~L~~A~~~g--d-~LiVgv~~D~~-v~~~Kg~~~pi~~~~ER~~~v~-~~~~Vd~Vvi  327 (423)
                      ....+.+.+|+|||.|.||+.+.+.|++..  | ..+|++.--.. ....|   ....+.++|+.|++ ++..-..+.+
T Consensus        20 ~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k---~~~~~~~~Rl~Ml~lai~~~~~~~V   95 (236)
T PLN02945         20 RTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKK---KGLASAEHRIQMCQLACEDSDFIMV   95 (236)
T ss_pred             CceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCccccc---CCCCCHHHHHHHHHHHhcCCCCeEe
Confidence            345678889999999999999998888643  3 23443321111 11123   25679999998885 6665444444

>COG1323 Predicted nucleotidyltransferase [General function prediction only]

Probab=97.18  E-value=0.0009  Score=68.06  Aligned_cols=83  Identities=24%  Similarity=0.304  Sum_probs=60.9

Q ss_pred             eeccCCHHHHHHHHHHHhc--CCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCC--------C--
Q 014487          264 AFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAP--------W--  331 (423)
Q Consensus       264 ~FDl~H~GHi~~L~~A~~~--gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p--------~--  331 (423)
                      -|||||.||..+|++|+++  +|..++++..| .+++  |. -++++..||..+.+++. +|.||..+-        +  
T Consensus         9 eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgd-f~qR--ge-pai~~k~~r~~~aL~~g-~D~VIelP~~~s~q~a~~fa   83 (358)
T COG1323           9 EYNPFHNGHQYHINKAREEFKGDEIIAVMSGD-FTQR--GE-PAIGHKWERKKMALEGG-ADLVIELPLERSGQGAPYFA   83 (358)
T ss_pred             ecCcccccHHHHHHHHHHhccCCceEEeeecc-hhhc--CC-CccccHHHHHhhhhhcC-ceEEEEcceEEecCCCchhh
Confidence            4999999999999999973  46555555555 5543  54 58999999999999885 888887532        1  


Q ss_pred             CchHHHHhhcCccEEEecCC
Q 014487          332 EVTKDMITTFNICLVVHGTV  351 (423)
Q Consensus       332 ~~~~~~i~~~~~d~vv~G~d  351 (423)
                      .-....+..+++|.++.|+.
T Consensus        84 ~~av~il~~l~~~~i~fgse  103 (358)
T COG1323          84 TRAVRILNALGGDDIAFGSP  103 (358)
T ss_pred             HHHHHHHHhcCCCeEEEeCC
Confidence            01233567778888888875

>TIGR00339 sopT ATP sulphurylase

Probab=97.03  E-value=0.0051  Score=63.53  Aligned_cols=94  Identities=19%  Similarity=0.169  Sum_probs=64.2

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHh--cCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCc-cc---cEE-EecCC
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK-WV---DEV-IANAP  137 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~--~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~-~V---D~v-i~~~p  137 (423)
                      -++|++.=+||++|.||..+++.|.+.  +|.|++-+.--    ..| +-.++.+-|+++++.+. ..   +.+ +.-.|
T Consensus       183 w~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g----~~k-~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~  257 (383)
T TIGR00339       183 WDTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVG----LTK-PGDIPAEVRMRAYEVLKEGYPNPERVMLTFLP  257 (383)
T ss_pred             CCeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCC----CCC-CCCCCHHHHHHHHHHHHhhCCCCCceEEEecc
Confidence            357888999999999999999999997  67666655443    223 36788999999998631 11   112 22233


Q ss_pred             cccc----HHHHHH--HHhhcCccEEEEcCCC
Q 014487          138 YAIT----EQFMNR--LFNEHKIDYIIHGDDP  163 (423)
Q Consensus       138 ~~~~----~efl~~--ll~~~~~d~VV~G~D~  163 (423)
                      +.+.    .+.+..  +.++|+|.++++|.|.
T Consensus       258 ~em~~agpreall~Aiir~nyG~th~IiG~Dh  289 (383)
T TIGR00339       258 LAMRYAGPREAIWHAIIRKNYGATHFIVGRDH  289 (383)
T ss_pred             hHhhcCCcHHHHHHHHHHHHCCCCEEEECCCC
Confidence            3222    244544  4467999999999885

Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.

>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function

Probab=96.95  E-value=0.0013  Score=67.94  Aligned_cols=85  Identities=19%  Similarity=0.370  Sum_probs=40.1

Q ss_pred             eeccCCHHHHHHHHHHHhc-CCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCC-CC---------
Q 014487          264 AFDLFHAGHVEILKKARQL-GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAP-WE---------  332 (423)
Q Consensus       264 ~FDl~H~GHi~~L~~A~~~-gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p-~~---------  332 (423)
                      -|.|||.||..+|++||+. +.-.||+|-|-..|.|  |. --+++--.|+.+.+.+. ||-|+--+- +.         
T Consensus         9 EYNPFHnGH~y~i~~~k~~~~ad~ii~vMSGnFvQR--GE-PAi~dKw~RA~~AL~~G-aDLViELP~~~a~qsA~~FA~   84 (388)
T PF05636_consen    9 EYNPFHNGHLYQIEQAKKITGADVIIAVMSGNFVQR--GE-PAIIDKWTRAEMALKNG-ADLVIELPVVYALQSAEYFAR   84 (388)
T ss_dssp             --TT--HHHHHHHHHHH---TSSEEEEEE--TTSBT--SS-B-SS-HHHHHHHHHHHT--SEEEE---G-----------
T ss_pred             eECCccHHHHHHHHHHhccCCCCEEEEEECCCcccC--CC-eeeCCHHHHHHHHHHcC-CCEEEECCCcccccccccccc
Confidence            4899999999999999965 3335667777778764  65 57999999999988885 898876321 11         


Q ss_pred             chHHHHhhcCccEEEecCCc
Q 014487          333 VTKDMITTFNICLVVHGTVS  352 (423)
Q Consensus       333 ~~~~~i~~~~~d~vv~G~d~  352 (423)
                      -...++..+++|.++-|++.
T Consensus        85 gaV~lL~~lgvd~l~FGsE~  104 (388)
T PF05636_consen   85 GAVSLLNALGVDYLSFGSES  104 (388)
T ss_dssp             --------------------
T ss_pred             cccccccccccccccccccc
Confidence            12346888899999999875

; PDB: 3GMI_A.

>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6

Probab=96.81  E-value=0.0036  Score=57.57  Aligned_cols=56  Identities=18%  Similarity=0.262  Sum_probs=46.9

Q ss_pred             eeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHH-hhcccCeeEEc
Q 014487          264 AFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIG  328 (423)
Q Consensus       264 ~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~Vd~Vvi~  328 (423)
                      .-.||+.||..++++|++.||.|.|=|.+++         +.+++..+|..+|+ .++..++|++-
T Consensus         7 NaNPFT~GH~yLiE~Aa~~~d~l~vFVV~eD---------~S~Fpf~~R~~LVk~G~~~L~NV~V~   63 (182)
T PF08218_consen    7 NANPFTLGHRYLIEQAAKECDWLHVFVVSED---------RSLFPFADRYELVKEGTADLPNVTVH   63 (182)
T ss_pred             cCCCCccHHHHHHHHHHHhCCEEEEEEEccc---------cCcCCHHHHHHHHHHHhCcCCCEEEE
Confidence            3579999999999999999999988887653         57899999997775 47788887773

2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity

>TIGR00018 panC pantoate--beta-alanine ligase

Probab=96.38  E-value=0.01  Score=58.86  Aligned_cols=71  Identities=20%  Similarity=0.237  Sum_probs=52.2

Q ss_pred             CCeEEE--EcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhc-cCCCCCCCCHHHHHHHHHhhcccCeeEEcC
Q 014487          255 NARVVY--IDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH-RGSYHPIMHLHERSLSVLACRYVDEVIIGA  329 (423)
Q Consensus       255 ~~~iv~--~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~-Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~  329 (423)
                      +++|++  +-|.   +|.||..++++|++.+|.+||.+..+..-... ......+++++++...++++ .||.++..+
T Consensus        21 g~~ig~VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~P~   94 (282)
T TIGR00018        21 GKTVGFVPTMGN---LHDGHMSLIDRAVAENDVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL-GVDVVFAPS   94 (282)
T ss_pred             CCeEEEEECCCc---ccHHHHHHHHHHHHhCCeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc-CCCEEECCC
Confidence            456654  5576   99999999999999999999999876543211 11123467999999998887 488887754

This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.

>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]

Probab=96.29  E-value=0.014  Score=57.63  Aligned_cols=67  Identities=16%  Similarity=0.205  Sum_probs=56.1

Q ss_pred             CCCCCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHH-HhhcccCeeEE
Q 014487          252 PGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVII  327 (423)
Q Consensus       252 ~~~~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v-~~~~~Vd~Vvi  327 (423)
                      ..++++|+-+-..-.||+.||--++++|.+.||.|.+=|.+++         +..++.++|..++ +..++.++|.+
T Consensus       141 r~~gkkIgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFvV~eD---------~S~f~y~~R~~Lv~~G~~~l~Nvt~  208 (352)
T COG3053         141 RHPGKKIGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFVVKED---------SSLFPYEDRLDLVKKGTADLPNVTV  208 (352)
T ss_pred             ccCCCeeEEEEEeCCCccchhHHHHHHHHhhCCEEEEEEEecc---------cccCCHHHHHHHHHHhhccCCceEE
Confidence            3467899999999999999999999999999999987777653         4689999999555 56777777766

>PLN02660 pantoate--beta-alanine ligase

Probab=95.94  E-value=0.022  Score=56.41  Aligned_cols=71  Identities=21%  Similarity=0.235  Sum_probs=51.4

Q ss_pred             CCeEE--EEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhc-cCCCCCCCCHHHHHHHHHhhcccCeeEEcC
Q 014487          255 NARVV--YIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH-RGSYHPIMHLHERSLSVLACRYVDEVIIGA  329 (423)
Q Consensus       255 ~~~iv--~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~-Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~  329 (423)
                      +++|+  .+-|.   +|.||..++++|++.+|.++|.+..+..-... ....+..+++++|...+.++. ||.++..+
T Consensus        20 g~~igfVpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~G-VD~vf~P~   93 (284)
T PLN02660         20 GKRIALVPTMGY---LHEGHLSLVRAARARADVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAALG-VDAVFNPH   93 (284)
T ss_pred             CCeEEEEEcCch---hhHHHHHHHHHHHHhCCEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHcC-CCEEECCC
Confidence            44554  44466   99999999999999999888888877543111 111235679999999888874 88887654

>PRK00380 panC pantoate--beta-alanine ligase; Reviewed

Probab=95.83  E-value=0.031  Score=55.42  Aligned_cols=73  Identities=19%  Similarity=0.280  Sum_probs=52.8

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhc-cCCCCCCCCHHHHHHHHHhhcccCeeEEcC
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH-RGSYHPIMHLHERSLSVLACRYVDEVIIGA  329 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~-Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~  329 (423)
                      +++++++. +.--+|.||..+|++|++.++.++|.+.....-... ......+.++++|...++++. ||.+++..
T Consensus        21 ~~~i~~v~-tmG~lH~GH~~Li~~a~~~a~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~G-vD~v~~p~   94 (281)
T PRK00380         21 GKRIGLVP-TMGALHEGHLSLVREARAEADIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAAG-VDLVFAPS   94 (281)
T ss_pred             CCeEEEEE-ccCceeHHHHHHHHHHHHhCCEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHcC-CCEEEeCC
Confidence            56676655 444499999999999999999888888766543111 111134678999999988874 89888754

>cd00560 PanC Pantoate-beta-alanine ligase

Probab=95.11  E-value=0.067  Score=52.97  Aligned_cols=92  Identities=17%  Similarity=0.237  Sum_probs=59.6

Q ss_pred             CCeEEE--EcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhc-cCCCCCCCCHHHHHHHHHhhcccCeeEEcCCC
Q 014487          255 NARVVY--IDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH-RGSYHPIMHLHERSLSVLACRYVDEVIIGAPW  331 (423)
Q Consensus       255 ~~~iv~--~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~-Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~  331 (423)
                      +++|++  +-|.   +|.||..++++|++.+|.++|.+..+..-... ......+.+++++...++++ .||.++..+..
T Consensus        21 ~~~ig~V~TmG~---LH~GH~~LI~~a~~~a~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~-GvD~vF~p~~~   96 (277)
T cd00560          21 GKTIGFVPTMGA---LHEGHLSLVRRARAENDVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA-GVDLLFAPSVE   96 (277)
T ss_pred             CCeEEEEECCCc---ccHHHHHHHHHHHHhCCEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC-CCCEEECCCHH
Confidence            455544  5566   99999999999999999999999877543111 11113466899999998887 48877432211


Q ss_pred             C-chHHHH----hhcCccEEEecC
Q 014487          332 E-VTKDMI----TTFNICLVVHGT  350 (423)
Q Consensus       332 ~-~~~~~i----~~~~~d~vv~G~  350 (423)
                      . .+.+++    ...++..++.|.
T Consensus        97 ~m~p~~f~~~~v~~~~~~~il~G~  120 (277)
T cd00560          97 EMYPEGLFSTFVDVGPLSEVLEGA  120 (277)
T ss_pred             HcCCCCCceEEEecCCCceEEecC
Confidence            1 112222    234566677787

PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.

>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []

Probab=94.63  E-value=0.079  Score=52.46  Aligned_cols=67  Identities=24%  Similarity=0.303  Sum_probs=41.2

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCC---CCCCcHHHHHHHHhcCccccEEEe
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG---PPVLSMEERLALVSGLKWVDEVIA  134 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~---~pi~t~eER~~~l~~~~~VD~vi~  134 (423)
                      ++-+..+---+|-||+.|+++|++.+|.++|.+.-+|.=.....   ...-+.+.=+++++.. +||.++.
T Consensus        23 ~igfVPTMGaLHeGHlsLi~~A~~~~d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~-gvD~vF~   92 (280)
T PF02569_consen   23 TIGFVPTMGALHEGHLSLIRRARAENDVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA-GVDAVFA   92 (280)
T ss_dssp             SEEEEEE-SS--HHHHHHHHHHHHHSSEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT-T-SEEE-
T ss_pred             eEEEECCCchhhHHHHHHHHHHHhCCCEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc-CCCEEEc
Confidence            34555566668999999999999999999999987774221111   2344567777888876 8998885

Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....

>PRK04149 sat sulfate adenylyltransferase; Reviewed

Probab=94.34  E-value=0.88  Score=47.28  Aligned_cols=95  Identities=19%  Similarity=0.142  Sum_probs=61.2

Q ss_pred             CCeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCcc----ccEEEe-cCCc
Q 014487           64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW----VDEVIA-NAPY  138 (423)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~----VD~vi~-~~p~  138 (423)
                      +-++|++.=+-+++|.||..+++.|.+.+|.|++  ++  .+-..| +-=++.+-|.+-.+.+.-    -+.++. ..|.
T Consensus       185 gw~~VvafqTrnP~HraHe~l~~~a~e~~d~lll--~p--lvG~~k-~~di~~~~r~~~~~~~~~~y~p~~~v~l~~lp~  259 (391)
T PRK04149        185 GWKTVVAFQTRNPPHRAHEYLQKCALEIVDGLLL--NP--LVGETK-SGDIPAEVRMEAYEALLKNYYPKDRVLLSVTPA  259 (391)
T ss_pred             CCCeEEEeecCCCCchHHHHHHHHHHHhcCeEEE--ec--CcCCCC-CCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence            3457888889999999999999999999984444  22  111122 345677888887776311    123322 1222


Q ss_pred             cc-----cHHHHHHHH-hhcCccEEEEcCCC
Q 014487          139 AI-----TEQFMNRLF-NEHKIDYIIHGDDP  163 (423)
Q Consensus       139 ~~-----~~efl~~ll-~~~~~d~VV~G~D~  163 (423)
                      .+     .+..+..++ +.|+|..+++|-|.
T Consensus       260 ~mryAGPrEa~lhAivrkN~GcTh~IvGrDH  290 (391)
T PRK04149        260 AMRYAGPREAIFHAIVRKNYGCTHFIVGRDH  290 (391)
T ss_pred             hhcccCcHHHHHHHHHHHhCCCCeEEECCCC
Confidence            11     134555555 56999999999986

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=93.96  E-value=0.096  Score=56.18  Aligned_cols=65  Identities=22%  Similarity=0.424  Sum_probs=43.5

Q ss_pred             eEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecC-------hhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcC
Q 014487          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTD-------QIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGA  329 (423)
Q Consensus       257 ~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D-------~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~  329 (423)
                      +|++++ +-=-+|.||++++++|++.+|.+||.|.-+       +...+     +|- +++.=...+... .||.|+..+
T Consensus        21 ~ig~VP-TMG~LH~GHlsLi~~A~~~~d~vVvSIFVNP~QF~~~eD~~~-----YPr-~~~~D~~~l~~~-gvd~vf~P~   92 (512)
T PRK13477         21 TIGFVP-TMGALHQGHLSLIRRARQENDVVLVSIFVNPLQFGPNEDLER-----YPR-TLEADRELCESA-GVDAIFAPS   92 (512)
T ss_pred             cEEEEC-CCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCchhhhh-----CCC-CHHHHHHHHHhc-CCCEEECCC
Confidence            555554 233489999999999999999999999533       33322     343 444445555554 588777654

>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]

Probab=93.58  E-value=0.28  Score=48.20  Aligned_cols=74  Identities=26%  Similarity=0.240  Sum_probs=48.2

Q ss_pred             hhcCCCCCeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhh-ccCC--CCCCcHHHHHHHHhcCccccEEEe
Q 014487           58 KKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (423)
Q Consensus        58 ~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~-~~K~--~pi~t~eER~~~l~~~~~VD~vi~  134 (423)
                      .+++..  ++|-+.=+--.+|-||+.|+++|++.+|.++|.+.-++.=. ++..  ...=+++.=+++++.. +||.++.
T Consensus        16 ~~r~~g--k~Vg~VPTMG~LH~GHlsLVr~A~~~~d~VVVSIFVNP~QFg~~EDl~~YPR~l~~D~~~le~~-gvd~vF~   92 (285)
T COG0414          16 ALRKEG--KRVGLVPTMGNLHEGHLSLVRRAKKENDVVVVSIFVNPLQFGPNEDLDRYPRTLERDLELLEKE-GVDIVFA   92 (285)
T ss_pred             HHHHcC--CEEEEEcCCcccchHHHHHHHHHhhcCCeEEEEEEeChhhcCCchhhhhCCCCHHHHHHHHHhc-CCcEEeC
Confidence            444433  35666667778999999999999999999998887776421 1111  1223444555555554 6776664

>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2

Probab=93.28  E-value=0.38  Score=45.95  Aligned_cols=93  Identities=20%  Similarity=0.252  Sum_probs=54.4

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhc-CeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCc----cccEEEecCCccc
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK----WVDEVIANAPYAI  140 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~----~VD~vi~~~p~~~  140 (423)
                      ++|++.=+-+++|.||..+++.|.+.+ +.|++-..-    -..| +--++.+-|.+-.+.+.    --+.++. .++..
T Consensus        21 ~~VvafqtrnPlHraHe~l~~~a~e~~~~~lll~plv----G~~k-~~d~~~~~r~~~~~~~~~~y~p~~~v~l-~~lp~   94 (215)
T PF01747_consen   21 RRVVAFQTRNPLHRAHEYLMRRALEKAGDGLLLHPLV----GPTK-PGDIPYEVRVRCYEALIDNYFPKNRVLL-SPLPL   94 (215)
T ss_dssp             SSEEEEEESS---HHHHHHHHHHHHHHTSEEEEEEBE----SB-S-TTSCCHHHHHHHHHHHHHHCSSTTGEEE-EBBES
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHhcCcEEEEecc----CCCC-cCCCCHHHHHHHHHHHHHHhCCCCcEEE-eccCc
Confidence            457777779999999999999999987 655543322    1222 34567788877766521    1233333 22222


Q ss_pred             c-------HHHHHHHH-hhcCccEEEEcCCCC
Q 014487          141 T-------EQFMNRLF-NEHKIDYIIHGDDPC  164 (423)
Q Consensus       141 ~-------~efl~~ll-~~~~~d~VV~G~D~~  164 (423)
                      +       +.-+..++ +.++|..+++|.|..
T Consensus        95 ~mr~aGPrEallhAiirkN~GcTh~IvGrdhA  126 (215)
T PF01747_consen   95 PMRYAGPREALLHAIIRKNYGCTHFIVGRDHA  126 (215)
T ss_dssp             B---SHHHHHHHHHHHHHHTT-SEEEE-TTTT
T ss_pred             hhcccCcHHHHHHHHHHHHCCCceEEeCCcCC
Confidence            2       34455555 569999999999964

7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....

>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]

Probab=92.93  E-value=1.4  Score=45.14  Aligned_cols=96  Identities=21%  Similarity=0.160  Sum_probs=61.5

Q ss_pred             CCeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhc----CccccEEEec-CCc
Q 014487           64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG----LKWVDEVIAN-APY  138 (423)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~----~~~VD~vi~~-~p~  138 (423)
                      .=++|++.=++|++|.||-.+.+.|.+.+|.|+|-+.-    -..| +-=.+.+-|++..+.    .--=|.+++. .|+
T Consensus       182 gwk~vvafQTRNp~HraHEyl~K~Al~~vdgllv~plV----G~tk-~gD~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~~~  256 (397)
T COG2046         182 GWKTVVAFQTRNPPHRAHEYLQKRALEKVDGLLVHPLV----GATK-PGDIPDEVRMEYYEALLKHYYPPDRVFLSVLPA  256 (397)
T ss_pred             CCeEEEEEecCCCchHHHHHHHHHHHHhcCcEEEEeee----cccc-CCCchHHHHHHHHHHHHHhCCCCCcEEEEecHH
Confidence            34689999999999999999999999999865443221    1112 223456666665543    2114555541 232


Q ss_pred             ccc-----HHHHHHHH-hhcCccEEEEcCCCC
Q 014487          139 AIT-----EQFMNRLF-NEHKIDYIIHGDDPC  164 (423)
Q Consensus       139 ~~~-----~efl~~ll-~~~~~d~VV~G~D~~  164 (423)
                      .+-     +.-+..++ +.|+|...++|-|..
T Consensus       257 aMRyagPrEa~~HaIIRkNyGcTHfIVGRDHA  288 (397)
T COG2046         257 AMRYAGPREALLHAIIRKNYGCTHFIVGRDHA  288 (397)
T ss_pred             HhhhcCcHHHHHHHHHHhhcCCeeeeecCCCC
Confidence            221     34455555 469999999999964

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=92.73  E-value=0.26  Score=52.91  Aligned_cols=68  Identities=19%  Similarity=0.244  Sum_probs=51.5

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchh-hhccCC--CCCCcHHHHHHHHhcCccccEEEec
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEE-IIANKG--PPVLSMEERLALVSGLKWVDEVIAN  135 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~-i~~~K~--~pi~t~eER~~~l~~~~~VD~vi~~  135 (423)
                      +|-+.-+-=.+|-||+.|+++|++.+|.++|.+.-+|. ..+...  ...-+.++=+++++.. +||.|+..
T Consensus        21 ~ig~VPTMG~LH~GHlsLi~~A~~~~d~vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~-gvd~vf~P   91 (512)
T PRK13477         21 TIGFVPTMGALHQGHLSLIRRARQENDVVLVSIFVNPLQFGPNEDLERYPRTLEADRELCESA-GVDAIFAP   91 (512)
T ss_pred             cEEEECCCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCchhhhhCCCCHHHHHHHHHhc-CCCEEECC
Confidence            56777788889999999999999999999999866664 111111  3345677788888886 89988753

>cd00517 ATPS ATP-sulfurylase

Probab=92.71  E-value=1.4  Score=45.10  Aligned_cols=96  Identities=19%  Similarity=0.215  Sum_probs=60.9

Q ss_pred             CCeEEEEecccCcCcHHHHHHHHHHHHhc--CeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCc--cc--cEEEe-cC
Q 014487           64 KRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK--WV--DEVIA-NA  136 (423)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~--~V--D~vi~-~~  136 (423)
                      +-++|++.=+-+++|.||..+++.|.+.+  +.|++-..    +-..| +-=++.+-|.+-.+.+.  +.  +.++. ..
T Consensus       155 gw~~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll~pl----vG~~k-~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~l  229 (353)
T cd00517         155 GWRRVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLLHPL----VGWTK-PGDVPDEVRMRAYEALLEEYYLPERTVLAIL  229 (353)
T ss_pred             CCCeEEEeecCCCCchhhHHHHHHHHHHcCCCcEEEEec----cCCCC-CCCCCHHHHHHHHHHHHHhCCCCCcEEEEec
Confidence            33578888999999999999999999987  43333221    11112 34567788887776531  22  44433 22


Q ss_pred             Ccccc-----HHHHHHHH-hhcCccEEEEcCCCC
Q 014487          137 PYAIT-----EQFMNRLF-NEHKIDYIIHGDDPC  164 (423)
Q Consensus       137 p~~~~-----~efl~~ll-~~~~~d~VV~G~D~~  164 (423)
                      |+.+-     +..+..++ +.++|..+++|-|..
T Consensus       230 p~~mryAGPrEallhAiirkN~GcThfIvGrDHA  263 (353)
T cd00517         230 PLPMRYAGPREALWHAIIRKNYGATHFIVGRDHA  263 (353)
T ss_pred             cchhcccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence            32211     34455555 569999999999863

ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be

>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []

Probab=92.70  E-value=0.24  Score=49.11  Aligned_cols=72  Identities=18%  Similarity=0.305  Sum_probs=37.0

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccC--CCCCCCCHHHHHHHHHhhcccCeeEEcC
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRG--SYHPIMHLHERSLSVLACRYVDEVIIGA  329 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg--~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~  329 (423)
                      ++++++++= -=-+|.||++++++|++.+|.+||.|.-+..=....-  ..+|- +++.=+..+.+. .||.|+..+
T Consensus        21 ~~~igfVPT-MGaLHeGHlsLi~~A~~~~d~vVVSIFVNP~QF~~~eD~~~YPR-~~e~D~~ll~~~-gvD~vF~Ps   94 (280)
T PF02569_consen   21 GKTIGFVPT-MGALHEGHLSLIRRARAENDVVVVSIFVNPTQFGPNEDFDKYPR-TLERDLELLEKA-GVDAVFAPS   94 (280)
T ss_dssp             TSSEEEEEE--SS--HHHHHHHHHHHHHSSEEEEEE---GGGSSTTSHTTTS----HHHHHHHHHHT-T-SEEE---
T ss_pred             CCeEEEECC-CchhhHHHHHHHHHHHhCCCEEEEEECcCcccCCCcchhhhCCC-ChHHHHHHHhcc-CCCEEEcCC
Confidence            456666652 2235999999999999999999999974432111000  01343 344444545444 588777643

Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....

>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]

Probab=92.30  E-value=2.7  Score=39.82  Aligned_cols=60  Identities=22%  Similarity=0.164  Sum_probs=45.9

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhc-----CeeEEEEecchhhhccCCCCCCcHHHHHHHHhc
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALG-----DELVVGVVSDEEIIANKGPPVLSMEERLALVSG  125 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~-----d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~  125 (423)
                      +.-.++.|+|.|+-.+|..+++-|+..-     -+++=|+-| |.-..+|.+-+.+.-.|+.|++.
T Consensus         8 ~v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimS-PV~DaYkKKgLipa~hrv~~~El   72 (234)
T KOG3199|consen    8 PVVLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMS-PVGDAYKKKGLIPAYHRVRMVEL   72 (234)
T ss_pred             eEEEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEec-ccchhhhccccchhhhHHHHHHh
Confidence            4456889999999999999999999853     245556554 33334666789999999999985

>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]

Probab=91.91  E-value=0.28  Score=48.18  Aligned_cols=70  Identities=26%  Similarity=0.422  Sum_probs=46.1

Q ss_pred             CCCCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCC-----CCCCCCHHHHHHHHHhhcccCeeEE
Q 014487          253 GPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGS-----YHPIMHLHERSLSVLACRYVDEVII  327 (423)
Q Consensus       253 ~~~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~-----~~pi~~~~ER~~~v~~~~~Vd~Vvi  327 (423)
                      ..+++|++++ +---+|.||+.++++|++.+|.+||.|.-+..=.   |+     ++|=  .-+|-..++.-..||-++.
T Consensus        19 ~~gk~Vg~VP-TMG~LH~GHlsLVr~A~~~~d~VVVSIFVNP~QF---g~~EDl~~YPR--~l~~D~~~le~~gvd~vF~   92 (285)
T COG0414          19 KEGKRVGLVP-TMGNLHEGHLSLVRRAKKENDVVVVSIFVNPLQF---GPNEDLDRYPR--TLERDLELLEKEGVDIVFA   92 (285)
T ss_pred             HcCCEEEEEc-CCcccchHHHHHHHHHhhcCCeEEEEEEeChhhc---CCchhhhhCCC--CHHHHHHHHHhcCCcEEeC
Confidence            3467777776 3445899999999999999999999998553211   11     1222  2245455555556776665


Q ss_pred             c
Q 014487          328 G  328 (423)
Q Consensus       328 ~  328 (423)
                      .
T Consensus        93 P   93 (285)
T COG0414          93 P   93 (285)
T ss_pred             C
Confidence            3

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=90.44  E-value=1.8  Score=47.27  Aligned_cols=97  Identities=15%  Similarity=0.093  Sum_probs=60.7

Q ss_pred             CCeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCc---cccEEEe-cCCcc
Q 014487           64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---WVDEVIA-NAPYA  139 (423)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~---~VD~vi~-~~p~~  139 (423)
                      +-++|++.=+-+++|.||..+++.|.+.++. .+-+++  .+-..| +--++.+-|.+-.+.+.   --+.++. ..|..
T Consensus       185 gw~~v~afqtrnP~Hr~He~l~~~a~~~~d~-~lll~p--~~G~~k-~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~p~~  260 (568)
T PRK05537        185 GWRRVVAFQTRNPLHRAHEELTKRAAREVGA-NLLIHP--VVGMTK-PGDIDHFTRVRCYEALLDKYPPATTLLSLLPLA  260 (568)
T ss_pred             CCCcEEEEecCCCCcHHHHHHHHHHHHhcCC-eEEEec--CCCCCC-CCCCCHHHHHHHHHHHHHhCCCCcEEEEeccch
Confidence            3457888889999999999999999998873 223333  111122 34567788887776521   1222222 12221


Q ss_pred             c-----cHHHHHHHH-hhcCccEEEEcCCCC
Q 014487          140 I-----TEQFMNRLF-NEHKIDYIIHGDDPC  164 (423)
Q Consensus       140 ~-----~~efl~~ll-~~~~~d~VV~G~D~~  164 (423)
                      +     .+..+..++ +.++|..+++|-|+.
T Consensus       261 mryaGpreai~hAi~r~N~Gcth~ivGrdhA  291 (568)
T PRK05537        261 MRMAGPREALWHAIIRRNYGCTHFIVGRDHA  291 (568)
T ss_pred             hcccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence            1     134555555 579999999998864

>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]

Probab=88.37  E-value=1.2  Score=42.25  Aligned_cols=67  Identities=21%  Similarity=0.254  Sum_probs=43.4

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhh-ccCC--CCCCcHHHHHHHHhcCccccEEEe
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~-~~K~--~pi~t~eER~~~l~~~~~VD~vi~  134 (423)
                      ++-+.-+--.+|-||..|++|+++..++.+|.+.-++.-. +...  ...-+...-+..++++ +||.|+.
T Consensus        25 tIgfVPTMG~LHeGH~SLvrqs~~~~~~tVVSIfVNP~QF~pteDL~~YPrt~~~D~~~L~~L-gvdvvfa   94 (283)
T KOG3042|consen   25 TIGFVPTMGCLHEGHASLVRQSVKENTYTVVSIFVNPSQFAPTEDLDNYPRTLPDDIKLLESL-GVDVVFA   94 (283)
T ss_pred             eEEEecccccccccHHHHHHHHHhhCceEEEEEEechhhcCChhHhhcCCccCccHHHHHHhc-CceEEEc
Confidence            3344445566999999999999999998888887766421 1111  1122334556667776 7777663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	423
3elb_A	341	Human Ctp: Phosphoethanolamine Cytidylyltransferase		4e-81
3elb_A	341	Human Ctp: Phosphoethanolamine Cytidylyltransferase		4e-17
3hl4_A	236	Crystal Structure Of A Mammalian Ctp:phosphocholine		3e-24
3hl4_A	236	Crystal Structure Of A Mammalian Ctp:phosphocholine		6e-22
1coz_A	129	Ctp:glycerol-3-Phosphate Cytidylyltransferase From		2e-12
2b7l_A	132	Crystal Structure Of Ctp:glycerol-3-Phosphate Cytid		4e-11
3glv_A	143	Crystal Structure Of The Lipopolysaccharide Core Bi		1e-09
3glv_A	143	Crystal Structure Of The Lipopolysaccharide Core Bi		8e-04

>pdb|3ELB|A Chain A, Human Ctp: Phosphoethanolamine Cytidylyltransferase In Complex With Cmp Length = 341

Iteration: 1
 Score =  298 bits (763), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 155/347 (44%), Positives = 223/347 (64%), Gaps = 26/347 (7%)
Query: 66  VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
           VRV+ DGC+D +HYGH+N LRQA+A GD L+VGV +DEEI  +KGPPV + EER   V  
Sbjct: 8   VRVWCDGCYDXVHYGHSNQLRQARAXGDYLIVGVHTDEEIAKHKGPPVFTQEERYKXVQA 67
Query: 126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
           +KWVDEV+  APY  T + +++    +  D+ +HG+D  L  DG D Y   K+ GRY++ 
Sbjct: 68  IKWVDEVVPAAPYVTTLETLDK----YNCDFCVHGNDITLTVDGRDTYEEVKQAGRYREC 123
Query: 186 KRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNA--SLP--RDPLRAIQSKDAHLS 234
           KRT+GVS+TD+VGR L       SS E +    ++ ++    P  R+P   +       S
Sbjct: 124 KRTQGVSTTDLVGRXLLVTKAHHSSQEXSSEYREYADSFGKCPGGRNPWTGV-------S 176
Query: 235 QFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYT 292
           QFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K  +L +  +++ G++ 
Sbjct: 177 QFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHF 236
Query: 293 DQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVS 352
           DQ V+ ++G  +PI +LHER+LSVLACRYV EV+IGAP+ VT ++++ F + LV HG   
Sbjct: 237 DQEVNHYKGKNYPIXNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGKTE 296
Query: 353 ETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAY 399
               P    SDPY+  K  GIF+ ++S  ++TT  + QRII N   Y
Sbjct: 297 --IIPDRDGSDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITNRLEY 341

>pdb|3ELB|A Chain A, Human Ctp: Phosphoethanolamine Cytidylyltransferase In Complex With Cmp Length = 341

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 90/162 (55%), Gaps = 7/162 (4%)
Query: 253 GPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHER 312
           G  A  V+ DG +D  H GH   L++AR  GD+L+VG++TD+ +++H+G   P+    ER
Sbjct: 4   GRRAVRVWCDGCYDXVHYGHSNQLRQARAXGDYLIVGVHTDEEIAKHKGP--PVFTQEER 61
Query: 313 SLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMG 372
              V A ++VDEV+  AP+  T + +  +N    VHG  ++    + G+ D YE  K  G
Sbjct: 62  YKXVQAIKWVDEVVPAAPYVTTLETLDKYNCDFCVHG--NDITLTVDGR-DTYEEVKQAG 118
Query: 373 IFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYY 414
            ++  +  + ++TT +  R +   +A+   ++++  SE + Y
Sbjct: 119 RYRECKRTQGVSTTDLVGRXLLVTKAH--HSSQEXSSEYREY 158

>pdb|3HL4|A Chain A, Crystal Structure Of A Mammalian Ctp:phosphocholine Cytidylyltransferase With Cdp-Choline Length = 236

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 82/138 (59%), Gaps = 6/138 (4%)
Query: 66  VRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           VRVY DG FDL H GHA AL QAK L     L+VGV SDE     KG  V++  ER   V
Sbjct: 77  VRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAV 136
Query: 124 SGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYK 183
              ++VDEV+ NAP+ +T +F+     EH+ID++ H D P       D Y   K+ G + 
Sbjct: 137 QHCRYVDEVVRNAPWTLTPEFLA----EHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFA 192
Query: 184 QIKRTEGVSSTDIVGRIL 201
             +RTEG+S++DI+ RI+
Sbjct: 193 PTQRTEGISTSDIITRIV 210

>pdb|3HL4|A Chain A, Crystal Structure Of A Mammalian Ctp:phosphocholine Cytidylyltransferase With Cdp-Choline Length = 236

Iteration: 1
 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 94/174 (54%), Gaps = 8/174 (4%)
Query: 242 RIVQFSNCKG-PGPNARVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSE 298
           R+     C+G P      VY DG FDLFH+GH   L +A+ L    +L+VG+ +D++   
Sbjct: 61  RVTMEEACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHN 120
Query: 299 HRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPL 358
            +G    +M+ +ER  +V  CRYVDEV+  APW +T + +    I  V H  +  ++   
Sbjct: 121 FKG--FTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPYSS--- 175
Query: 359 TGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKK 412
            G  D Y+  K  G+F   +  + I+T+ +  RI+ +++ Y +RN ++  + K+
Sbjct: 176 AGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKE 229

>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From Bacillus Subtilis Length = 129

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 263 GAFDLFHAGHVEILKKARQLGDFLLVGIYTDQI-VSEHRGSYHPIMHLHERSLSVLACRY 321
           G FDL H GH+++L++A+QLGD+L+V I TD+  + + + +YH   H   R L +   RY
Sbjct: 8   GTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEH---RKLILETIRY 64
Query: 322 VDEVIIGAPWEVTKDMITTFNICLVVHG 349
           VDEVI    WE  K  I   NI + V G
Sbjct: 65  VDEVIPEKNWEQKKQDIIDHNIDVFVMG 92

>pdb|2B7L|A Chain A, Crystal Structure Of Ctp:glycerol-3-Phosphate Cytidylyltransferase From Staphylococcus Aureus Length = 132

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 13/131 (9%)
Query: 263 GAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVS-EHRGSYHPIMHLHERSLSVLACRY 321
           G +DL H GH+E+L++AR++GD+L+V + TD+    +H+ SY+      +R + + + RY
Sbjct: 8   GTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYD---YEQRKMMLESIRY 64
Query: 322 VDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPK 381
           VD VI    W   +D +  F++ + V G   E         D  EV         L+  +
Sbjct: 65  VDLVIPEKGWGQKEDDVEKFDVDVFVMGHDWEGEFDFL--KDKCEVI-------YLKRTE 115
Query: 382 SITTTSVAQRI 392
            I+TT + Q +
Sbjct: 116 GISTTKIKQEL 126

>pdb|3GLV|A Chain A, Crystal Structure Of The Lipopolysaccharide Core Biosynthesis Protein From Thermoplasma Volcanium Gss1 Length = 143

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 40/68 (58%)
Query: 66  VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
           +RV   G FD++H GH + L+++K LGDELVV V  D     N   P+     RLAL+S 
Sbjct: 3   IRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISE 62
Query: 126 LKWVDEVI 133
           LK VD  I
Sbjct: 63  LKVVDRAI 70

>pdb|3GLV|A Chain A, Crystal Structure Of The Lipopolysaccharide Core Biosynthesis Protein From Thermoplasma Volcanium Gss1 Length = 143

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 263 GAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYV 322
           G FD+ H GH+  LK++++LGD L+V +  D   + + G   PI   + R   +   + V
Sbjct: 9   GVFDILHLGHIHYLKESKKLGDELVVVVARDS-TARNNGKI-PIFDENSRLALISELKVV 66
Query: 323 DEVIIGAPWEVTKDMI 338
           D  I+G   ++ K +I
Sbjct: 67  DRAILGHEGDMMKTVI 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	423
3elb_A	341	Ethanolamine-phosphate cytidylyltransferase; kenne	1e-143
3elb_A	341	Ethanolamine-phosphate cytidylyltransferase; kenne	1e-47
3elb_A	341	Ethanolamine-phosphate cytidylyltransferase; kenne	9e-42
3hl4_A	236	Choline-phosphate cytidylyltransferase A; rossmann	7e-60
3hl4_A	236	Choline-phosphate cytidylyltransferase A; rossmann	6e-51
1coz_A	129	Protein (glycerol-3-phosphate cytidylyltransferase	6e-54
1coz_A	129	Protein (glycerol-3-phosphate cytidylyltransferase	1e-33
2b7l_A	132	Glycerol-3-phosphate cytidylyltransferase; rossman	8e-54
2b7l_A	132	Glycerol-3-phosphate cytidylyltransferase; rossman	3e-34
3glv_A	143	Lipopolysaccharide core biosynthesis protein; stru	6e-23
3glv_A	143	Lipopolysaccharide core biosynthesis protein; stru	5e-17
3do8_A	148	Phosphopantetheine adenylyltransferase; protein wi	7e-10
3do8_A	148	Phosphopantetheine adenylyltransferase; protein wi	3e-07
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	4e-06
1ej2_A	181	Nicotinamide mononucleotide adenylyltransferase; d	6e-06
1f9a_A	168	Hypothetical protein MJ0541; alpha/beta, transfera	7e-06
1f9a_A	168	Hypothetical protein MJ0541; alpha/beta, transfera	1e-04
1od6_A	160	PPAT, phosphopantetheine adenylyltransferase; coen	4e-05
1qjc_A	158	Phosphopantetheine adenylyltransferase; coenzyme A	5e-05
4f3r_A	162	Phosphopantetheine adenylyltransferase; phosphopan	9e-05
3k9w_A	187	Phosphopantetheine adenylyltransferase; niaid, ssg	1e-04
3nd5_A	171	Phosphopantetheine adenylyltransferase; PPAT, coen	2e-04
3f3m_A	168	Phosphopantetheine adenylyltransferase; PPAT, coen	2e-04
1o6b_A	169	Phosphopantetheine adenylyltransferase; structural	2e-04
1vlh_A	173	Phosphopantetheine adenylyltransferase; TM0741, st	3e-04
3nbk_A	177	Phosphopantetheine adenylyltransferase; PPAT, PHP;	3e-04
3nv7_A	157	Phosphopantetheine adenylyltransferase; helicobact	4e-04

>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Length = 341

 Score =  412 bits (1060), Expect = e-143
 Identities = 151/345 (43%), Positives = 225/345 (65%), Gaps = 12/345 (3%)

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
           G ++ VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER 
Sbjct: 3   GGRRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERY 62

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
            +V  +KWVDEV+  APY  T + +    +++  D+ +HG+D  L  DG D Y   K+ G
Sbjct: 63  KMVQAIKWVDEVVPAAPYVTTLETL----DKYNCDFCVHGNDITLTVDGRDTYEEVKQAG 118

Query: 181 RYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDA----HLSQF 236
           RY++ KRT+GVS+TD+VGR+L   +   + ++ ++                     +SQF
Sbjct: 119 RYRECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKCPGGRNPWTGVSQF 178

Query: 237 LPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQ 294
           L TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K  +L +  +++ G++ DQ
Sbjct: 179 LQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQ 238

Query: 295 IVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSET 354
            V+ ++G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT ++++ F + LV HG     
Sbjct: 239 EVNHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGKTEI- 297

Query: 355 NTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAY 399
             P    SDPY+  K  GIF+ ++S  ++TT  + QRII N   Y
Sbjct: 298 -IPDRDGSDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITNRLEY 341

>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Length = 341

 Score =  165 bits (419), Expect = 1e-47
 Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 9/158 (5%)

Query: 54  CFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDE--LVVGVVSDEEIIANKGP 111
            F   K  +     +Y+ G FDL H GH + L +   L +   ++ G+  D+E+   KG 
Sbjct: 187 QFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGK 246

Query: 112 --PVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCL-LPD 168
             P++++ ER   V   ++V EV+  APYA+T + +    +  K+D + HG    +   D
Sbjct: 247 NYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELL----SHFKVDLVCHGKTEIIPDRD 302

Query: 169 GTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMED 206
           G+D Y   K+ G ++QI     +++  IV RI+++  +
Sbjct: 303 GSDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITNRLE 340

>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Length = 341

 Score =  149 bits (378), Expect = 9e-42
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 5/171 (2%)

Query: 253 GPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHER 312
           G  A  V+ DG +D+ H GH   L++AR +GD+L+VG++TD+ +++H+G   P+    ER
Sbjct: 4   GRRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKG--PPVFTQEER 61

Query: 313 SLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMG 372
              V A ++VDEV+  AP+  T + +  +N    VHG      T      D YE  K  G
Sbjct: 62  YKMVQAIKWVDEVVPAAPYVTTLETLDKYNCDFCVHG---NDITLTVDGRDTYEEVKQAG 118

Query: 373 IFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFVSGD 423
            ++  +  + ++TT +  R++   +A+       +   +          G 
Sbjct: 119 RYRECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKCPGGR 169

>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus} Length = 236

 Score =  194 bits (493), Expect = 7e-60
 Identities = 61/154 (39%), Positives = 86/154 (55%), Gaps = 6/154 (3%)

Query: 55  FHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPP 112
              +    ++ VRVY DG FDL H GHA AL QAK L     L+VGV SDE     KG  
Sbjct: 66  EACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFT 125

Query: 113 VLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDA 172
           V++  ER   V   ++VDEV+ NAP+ +T +F+     EH+ID++ H D P       D 
Sbjct: 126 VMNENERYDAVQHCRYVDEVVRNAPWTLTPEFL----AEHRIDFVAHDDIPYSSAGSDDV 181

Query: 173 YALAKKVGRYKQIKRTEGVSSTDIVGRILSSMED 206
           Y   K+ G +   +RTEG+S++DI+ RI+   + 
Sbjct: 182 YKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDV 215

>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus} Length = 236

 Score =  170 bits (433), Expect = 6e-51
 Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 14/234 (5%)

Query: 189 EGVSSTDIVGRIL---SSMEDTKACEDHNNASLPRDPL----RAIQSKDAHLSQFLPTSR 241
           +  SS  +  R         +    ED   + + R  +     A  S +  +    P  R
Sbjct: 2   DAQSSAKVNSRKRRKEVPGPNGATEEDGIPSKVQRCAVGLRQPAPFSDEIEVDFSKPYVR 61

Query: 242 RIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEH 299
             ++ +    P      VY DG FDLFH+GH   L +A+ L    +L+VG+ +D++    
Sbjct: 62  VTMEEACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNF 121

Query: 300 RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLT 359
           +G    +M+ +ER  +V  CRYVDEV+  APW +T + +    I  V H  +  ++    
Sbjct: 122 KG--FTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPYSS---A 176

Query: 360 GQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKY 413
           G  D Y+  K  G+F   +  + I+T+ +  RI+ +++ Y +RN ++  + K+ 
Sbjct: 177 GSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKEL 230

>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A* Length = 129

 Score =  174 bits (445), Expect = 6e-54
 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 10/134 (7%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           +V   G FDL+H+GH   L +AK LGD LVV + +DE  +  +     S E R  ++  +
Sbjct: 3   KVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETI 62

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
           ++VDEVI    +   +Q +     +H ID  + GD      D    +   K       + 
Sbjct: 63  RYVDEVIPEKNWEQKKQDI----IDHNIDVFVMGD------DWEGKFDFLKDQCEVVYLP 112

Query: 187 RTEGVSSTDIVGRI 200
           RTEG+S+T I   I
Sbjct: 113 RTEGISTTKIKEEI 126

>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A* Length = 129

 Score =  121 bits (306), Expect = 1e-33
 Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 11/138 (7%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV 316
           + V   G FDL H GH+++L++A+QLGD+L+V I TD+     +           R L +
Sbjct: 2   KKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFN--LQKQKKAYHSYEHRKLIL 59

Query: 317 LACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQL 376
              RYVDEVI    WE  K  I   NI + V G   E           ++  K       
Sbjct: 60  ETIRYVDEVIPEKNWEQKKQDIIDHNIDVFVMGDDWE---------GKFDFLKDQCEVVY 110

Query: 377 LESPKSITTTSVAQRIIA 394
           L   + I+TT + + I  
Sbjct: 111 LPRTEGISTTKIKEEIAG 128

>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus} Length = 132

 Score =  174 bits (444), Expect = 8e-54
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 10/136 (7%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           RV   G +DL+HYGH   LR+A+ +GD L+V + +DE             E+R  ++  +
Sbjct: 3   RVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESI 62

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
           ++VD VI    +   E  +     +  +D  + G       D    +   K       +K
Sbjct: 63  RYVDLVIPEKGWGQKEDDV----EKFDVDVFVMGH------DWEGEFDFLKDKCEVIYLK 112

Query: 187 RTEGVSSTDIVGRILS 202
           RTEG+S+T I   +  
Sbjct: 113 RTEGISTTKIKQELYG 128

>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus} Length = 132

 Score =  122 bits (310), Expect = 3e-34
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 11/141 (7%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV 316
           + V   G +DL H GH+E+L++AR++GD+L+V + TD+                +R + +
Sbjct: 2   KRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKK--SYYDYEQRKMML 59

Query: 317 LACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQL 376
            + RYVD VI    W   +D +  F++ + V G   +           ++  K       
Sbjct: 60  ESIRYVDLVIPEKGWGQKEDDVEKFDVDVFVMG--HD-------WEGEFDFLKDKCEVIY 110

Query: 377 LESPKSITTTSVAQRIIANHE 397
           L+  + I+TT + Q +     
Sbjct: 111 LKRTEGISTTKIKQELYGKDA 131

>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1} Length = 143

 Score = 93.0 bits (232), Expect = 6e-23
 Identities = 42/161 (26%), Positives = 61/161 (37%), Gaps = 43/161 (26%)

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP--PVLSMEE 118
           G     RV   G FD++H GH + L+++K LGDELVV V  D           P+     
Sbjct: 1   GMI---RVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTA--RNNGKIPIFDENS 55

Query: 119 RLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPD----GTDAYA 174
           RLAL+S LK VD  I              L +E  +   +      + PD    G D   
Sbjct: 56  RLALISELKVVDRAI--------------LGHEGDMMKTVI----EVKPDIITLGYD-QK 96

Query: 175 LAKKVGRYKQIKR-------------TEGVSSTDIVGRILS 202
             +   + K  K               +  SS+ +  +I+ 
Sbjct: 97  FDEAELQSKINKLGITVKIVRISKYDGQLNSSSSVRKKIME 137

>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1} Length = 143

 Score = 76.5 bits (189), Expect = 5e-17
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV 316
             V   G FD+ H GH+  LK++++LGD L+V +  D   +       PI   + R   +
Sbjct: 3   IRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDS--TARNNGKIPIFDENSRLALI 60

Query: 317 LACRYVDEVIIG 328
              + VD  I+G
Sbjct: 61  SELKVVDRAILG 72

>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Length = 148

 Score = 56.2 bits (135), Expect = 7e-10
 Identities = 17/88 (19%), Positives = 30/88 (34%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           +V + G F+ +H GH   +  A  LG   +   V+ + +   +   VL    R   V   
Sbjct: 2   KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVLPFAIRAENVKRY 61

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKI 154
                        IT  +   L  + + 
Sbjct: 62  VMRKYGFEPEIVKITNPYGKTLDVDFEY 89

>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Length = 148

 Score = 48.9 bits (116), Expect = 3e-07
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 259 VYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL 317
           V + G F+  H GH +++  A +LG   + +G+ +D++      S  P      R+ +V 
Sbjct: 3   VALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVLPFA---IRAENVK 59

Query: 318 ACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSET 354
                         ++T     T ++         ET
Sbjct: 60  RYVMRKYGFEPEIVKITNPYGKTLDVDFEYLVVSPET 96

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Length = 365

 Score = 47.6 bits (112), Expect = 4e-06
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 12/83 (14%)

Query: 63  KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEE-----IIANKGPPVLSME 117
           +K+V V   G F  +H GH N + +A +  DEL V V SD          +K   + +++
Sbjct: 1   EKKVGVIF-GKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQ 59

Query: 118 ERLALVSGLKWVDEVIANAPYAI 140
           +RL       W+ ++       I
Sbjct: 60  DRLR------WMQQIFKYQKNQI 76

>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A* Length = 181

 Score = 45.8 bits (108), Expect = 6e-06
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 19/140 (13%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           R  + G     H GH   ++      DEL++ + S +   + + P   +  ER+ +++  
Sbjct: 5   RGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLSHSIRDP--FTAGERVMMLT-- 60

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQ-- 184
           K + E    A         +   N   + +I       L P     Y+    V R     
Sbjct: 61  KALSENGIPASRYYIIPVQDIECNALWVGHIKM-----LTPPFDRVYSGNPLVQRLFSED 115

Query: 185 --------IKRTEGVSSTDI 196
                   +   +  S T++
Sbjct: 116 GYEVTAPPLFYRDRYSGTEV 135

>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3 Length = 168

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 16/93 (17%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 66  VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
           +R ++ G F   H GH   +++     DE+++G+ S ++    + P   +  ER+ +++ 
Sbjct: 1   LRGFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSHTLENP--FTAGERILMIT- 57

Query: 126 LKWVDEVIANAP-YAITEQFMNRLFNEHKIDYI 157
                + + +           +  FN   + Y+
Sbjct: 58  -----QSLKDYDLTYYPIPIKDIEFNSIWVSYV 85

>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3 Length = 168

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSY 303
           R   I G F  FH GH+E++KK  +  D +++GI + Q        +
Sbjct: 2   RGFII-GRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSHTLENPF 47

>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3 Length = 160

 Score = 42.8 bits (102), Expect = 4e-05
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVL-SMEERLALV 123
           G FD +  GH + +++A  L +++ V V+ +     +K    L S EERLA++
Sbjct: 7   GSFDPLTNGHLDVIQRASRLFEKVTVAVLENP----SKRGQYLFSAEERLAII 55

>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A Length = 158

 Score = 42.4 bits (101), Expect = 5e-05
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           ++  +Y  G FD +  GH + + +A  + D +++ + +      +K  P+ ++EER+AL 
Sbjct: 1   QKRAIY-PGTFDPITNGHIDIVTRATQMFDHVILAIAAS----PSKK-PMFTLEERVALA 54

>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii} Length = 162

 Score = 41.7 bits (99), Expect = 9e-05
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           K + +Y  G FD +  GH + + +A  L ++++V           K  P L +EER+ L+
Sbjct: 5   KPIAIY-PGTFDPLTNGHVDIIERALPLFNKIIVACAPTS----RKD-PHLKLEERVNLI 58

>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A* Length = 187

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 56  HKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLS 115
            + +      V VY  G FD +  GH + +R+A ++ D LVVGV         K  P  S
Sbjct: 14  AQTQGPGSMVVAVY-PGTFDPLTRGHEDLVRRASSIFDTLVVGVADS----RAKK-PFFS 67

Query: 116 MEERLALV 123
           +EERL + 
Sbjct: 68  LEERLKIA 75

>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} PDB: 3nd6_A* 3nd7_A* Length = 171

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           +++ ++  G FD M  GH N + ++  L DE+++GV  +     +K   + + EE+  L+
Sbjct: 2   RKIALF-PGSFDPMTNGHLNLIERSAKLFDEVIIGVFIN----TSKQ-TLFTPEEKKYLI 55

>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} Length = 168

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 63  KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLAL 122
           +  + V   G FD + YGH + + ++    DE+ V V+ +    + K     S+EER+ L
Sbjct: 2   EHTIAVI-PGSFDPITYGHLDIIERSTDRFDEIHVCVLKN----SKKE-GTFSLEERMDL 55

Query: 123 V 123
           +
Sbjct: 56  I 56

>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3 Length = 169

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
             + V   G FD + YGH + +++   + +++ V V+++    ++K  P+ S+EER  L+
Sbjct: 2   ASIAVC-PGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNN----SSKK-PLFSVEERCELL 55

>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3 Length = 173

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           G FD +  GH + +++A ++ DELVV V  +      K   + ++EER  L+
Sbjct: 19  GSFDPITLGHVDIIKRALSIFDELVVLVTENP----RKK-CMFTLEERKKLI 65

>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 3lcj_A* 3rba_A* 1tfu_A* 3rff_A 3rhs_A* Length = 177

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 11/73 (15%)

Query: 56  HKKKCGKKKRVRVYMD-----GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG 110
           H    G   R   +M      G FD +  GH +   +A A  DE+VV ++ +      K 
Sbjct: 8   HHHSSGLVPR-GSHMTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVN----PAKT 62

Query: 111 PPVLSMEERLALV 123
             +  ++ER+A+V
Sbjct: 63  -GMFDLDERIAMV 74

>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A* Length = 157

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           ++V +Y  G FD +  GH + + ++  L ++L+V V         K  P+ S++ERL ++
Sbjct: 2   QKVGIY-PGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSS----AKN-PMFSLDERLKMI 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	423
3elb_A	341	Ethanolamine-phosphate cytidylyltransferase; kenne	100.0
3hl4_A	236	Choline-phosphate cytidylyltransferase A; rossmann	100.0
3hl4_A	236	Choline-phosphate cytidylyltransferase A; rossmann	99.97
3elb_A	341	Ethanolamine-phosphate cytidylyltransferase; kenne	99.95
2b7l_A	132	Glycerol-3-phosphate cytidylyltransferase; rossman	99.89
1coz_A	129	Protein (glycerol-3-phosphate cytidylyltransferase	99.89
3glv_A	143	Lipopolysaccharide core biosynthesis protein; stru	99.87
3op1_A	308	Macrolide-efflux protein; structural genomics, PSI	99.84
1coz_A	129	Protein (glycerol-3-phosphate cytidylyltransferase	99.83
2b7l_A	132	Glycerol-3-phosphate cytidylyltransferase; rossman	99.83
1mrz_A	293	Riboflavin kinase/FMN adenylyltransferase; rossman	99.79
3glv_A	143	Lipopolysaccharide core biosynthesis protein; stru	99.79
2x0k_A	338	Riboflavin biosynthesis protein RIBF; riboflavin k	99.78
3nv7_A	157	Phosphopantetheine adenylyltransferase; helicobact	99.74
3k9w_A	187	Phosphopantetheine adenylyltransferase; niaid, ssg	99.71
4f3r_A	162	Phosphopantetheine adenylyltransferase; phosphopan	99.7
1qjc_A	158	Phosphopantetheine adenylyltransferase; coenzyme A	99.69
3k9w_A	187	Phosphopantetheine adenylyltransferase; niaid, ssg	99.68
1o6b_A	169	Phosphopantetheine adenylyltransferase; structural	99.68
3nv7_A	157	Phosphopantetheine adenylyltransferase; helicobact	99.68
4f3r_A	162	Phosphopantetheine adenylyltransferase; phosphopan	99.67
2qtr_A	189	Nicotinate (nicotinamide) nucleotide adenylyltran;	99.66
1kam_A	194	Deamido-NAD(+), nicotinate-nucleotide adenylyltran	99.65
3nbk_A	177	Phosphopantetheine adenylyltransferase; PPAT, PHP;	99.64
3nd5_A	171	Phosphopantetheine adenylyltransferase; PPAT, coen	99.63
1vlh_A	173	Phosphopantetheine adenylyltransferase; TM0741, st	99.62
1od6_A	160	PPAT, phosphopantetheine adenylyltransferase; coen	99.62
3f3m_A	168	Phosphopantetheine adenylyltransferase; PPAT, coen	99.6
3f3m_A	168	Phosphopantetheine adenylyltransferase; PPAT, coen	99.6
1k4m_A	213	NAMN adenylyltransferase; nucleotidyltransferase;	99.58
3nbk_A	177	Phosphopantetheine adenylyltransferase; PPAT, PHP;	99.58
3nd5_A	171	Phosphopantetheine adenylyltransferase; PPAT, coen	99.57
1qjc_A	158	Phosphopantetheine adenylyltransferase; coenzyme A	99.53
1yum_A	242	'probable nicotinate-nucleotide adenylyltransferas	99.53
1vlh_A	173	Phosphopantetheine adenylyltransferase; TM0741, st	99.52
2h29_A	189	Probable nicotinate-nucleotide adenylyltransferase	99.48
3h05_A	177	Uncharacterized protein VPA0413; nucleotidylyl, tr	99.45
1o6b_A	169	Phosphopantetheine adenylyltransferase; structural	99.44
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.43
1od6_A	160	PPAT, phosphopantetheine adenylyltransferase; coen	99.42
1ej2_A	181	Nicotinamide mononucleotide adenylyltransferase; d	99.42
3do8_A	148	Phosphopantetheine adenylyltransferase; protein wi	99.36
1kam_A	194	Deamido-NAD(+), nicotinate-nucleotide adenylyltran	99.36
3gmi_A	357	UPF0348 protein MJ0951; protein with unknown funct	99.36
2qtr_A	189	Nicotinate (nicotinamide) nucleotide adenylyltran;	99.35
1f9a_A	168	Hypothetical protein MJ0541; alpha/beta, transfera	99.34
1kqn_A	279	Nmnat, nicotinamide mononucleotide adenylyl transf	99.31
3do8_A	148	Phosphopantetheine adenylyltransferase; protein wi	99.3
1mrz_A	293	Riboflavin kinase/FMN adenylyltransferase; rossman	99.27
1nup_A	252	FKSG76; NAD biosynthesis, mitochondria, pyridine a	99.26
1yum_A	242	'probable nicotinate-nucleotide adenylyltransferas	99.25
1k4m_A	213	NAMN adenylyltransferase; nucleotidyltransferase;	99.21
2ejc_A	280	Pantoate--beta-alanine ligase; X-RAY diffraction,	99.19
3h05_A	177	Uncharacterized protein VPA0413; nucleotidylyl, tr	99.14
2h29_A	189	Probable nicotinate-nucleotide adenylyltransferase	99.11
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.1
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.09
2x0k_A	338	Riboflavin biosynthesis protein RIBF; riboflavin k	99.09
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.04
1f9a_A	168	Hypothetical protein MJ0541; alpha/beta, transfera	99.02
3op1_A	308	Macrolide-efflux protein; structural genomics, PSI	99.01
1ej2_A	181	Nicotinamide mononucleotide adenylyltransferase; d	98.98
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	98.89
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	98.88
1v8f_A	276	Pantoate-beta-alanine ligase; rossmann fold, dimer	98.81
1kqn_A	279	Nmnat, nicotinamide mononucleotide adenylyl transf	98.73
3ag6_A	283	Pantothenate synthetase; ATP-dependent enzyme, ATP	98.67
1nup_A	252	FKSG76; NAD biosynthesis, mitochondria, pyridine a	98.61
2ejc_A	280	Pantoate--beta-alanine ligase; X-RAY diffraction,	98.58
3cov_A	301	Pantothenate synthetase; pantothenate biosynthesis	98.47
1jhd_A	396	Sulfate adenylyltransferase; sulfurylase, APS, che	98.32
1v47_A	349	ATP sulfurylase; product binding complex, zinc, ri	98.26
3gmi_A	357	UPF0348 protein MJ0951; protein with unknown funct	98.25
3uk2_A	283	Pantothenate synthetase; AMP, structural genomics,	97.51
1v8f_A	276	Pantoate-beta-alanine ligase; rossmann fold, dimer	96.87
3inn_A	314	Pantothenate synthetase; ssgcid, SBRI, UW, decode,	96.63
3ag6_A	283	Pantothenate synthetase; ATP-dependent enzyme, ATP	96.45
3q12_A	287	Pantoate--beta-alanine ligase; structural genomics	96.17
3cov_A	301	Pantothenate synthetase; pantothenate biosynthesis	95.86
3q12_A	287	Pantoate--beta-alanine ligase; structural genomics	95.83
3inn_A	314	Pantothenate synthetase; ssgcid, SBRI, UW, decode,	95.36
1r6x_A	395	ATP:sulfate adenylyltransferase; APS kinase-like d	94.84
3mxt_A	285	Pantothenate synthetase; alpha-beta-alpha, structu	94.33
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	94.28
3uk2_A	283	Pantothenate synthetase; AMP, structural genomics,	94.13
3mxt_A	285	Pantothenate synthetase; alpha-beta-alpha, structu	94.09
3n8h_A	264	Pantothenate synthetase; alpha-beta sandwich, liga	93.4
3n8h_A	264	Pantothenate synthetase; alpha-beta sandwich, liga	92.27
1v47_A	349	ATP sulfurylase; product binding complex, zinc, ri	92.13
1jhd_A	396	Sulfate adenylyltransferase; sulfurylase, APS, che	91.89
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	90.11
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	89.15
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	85.49
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	83.02

>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.4e-73  Score=568.33  Aligned_cols=331  Identities=45%  Similarity=0.806  Sum_probs=283.5

Q ss_pred             CCCeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEecCCccccH
Q 014487           63 KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITE  142 (423)
Q Consensus        63 ~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~~  142 (423)
                      .++++|++.||||++|.||+++|++|+++|++|+|||++|+.+...|++|++|.+||++++++|+|||+|++..|+....
T Consensus         5 ~~~~~v~~~G~FD~lH~GH~~lL~~A~~l~d~LiVgV~~d~~v~~~K~~pi~s~eER~~~l~~l~~VD~Vv~f~~~~~~~   84 (341)
T 3elb_A            5 RRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQAIKWVDEVVPAAPYVTTL   84 (341)
T ss_dssp             CCCCEEEEEECCCSCCHHHHHHHHHHHHTSSEEEEEECCHHHHHHHSSCCSSCHHHHHHHHHHBTTCCEEEETCCSSCCH
T ss_pred             CCceEEEEEeeCCCCCHHHHHHHHHHHHhCCcCEEEeecCHHHhccCCCCCCCHHHHHHHHHHcCCCCEEEecCCCCCHH
Confidence            56789999999999999999999999999999999999999876667789999999999999999999999977876678


Q ss_pred             HHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCCcEEEeccCCCCCHHHHHHHHHhcccccccccccc--CCCCCC
Q 014487          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHN--NASLPR  220 (423)
Q Consensus       143 efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~iSST~Ir~rI~~~~~~~~~~~~~~--~~~~~~  220 (423)
                      +|+    ++++||++|+|+||++|.++.+.|+.++..|+++.+++++++|||+|++||+.+++.|+...+..  ..+...
T Consensus        85 efi----~~~~~d~vV~G~D~~~g~~~~~~~~~~k~~G~~~~~~~t~g~STT~ii~ri~~~~~~~~~~~~~~~~~~~~~~  160 (341)
T 3elb_A           85 ETL----DKYNCDFCVHGNDITLTVDGRDTYEEVKQAGRYRECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYAD  160 (341)
T ss_dssp             HHH----HHTTCSEEEECSCCCBCTTSCBTTHHHHHTTCEEECCCCTTCCHHHHHHHHHC--------------------
T ss_pred             HHH----HHhCCCEEEECCCCCCCCCCcchHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhccccccccccchhhHHHHH
Confidence            887    47899999999999999999999999999999999999999999999999999999888643221  112223


Q ss_pred             Cchhh--hcccccccccccccccchhccccCCCCCCCCeEEEEcCeeccCCHHHHHHHHHHHhcCC--EEEEEEecChhh
Q 014487          221 DPLRA--IQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIV  296 (423)
Q Consensus       221 ~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd--~LiVgv~~D~~v  296 (423)
                      .|+..  +.++++.+++|++++++|.||++|+.|.+++++||++|+|||||.||+++|++|+++||  +|||||++|+++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~iv~~~GsFD~~h~GHl~~L~rA~~l~D~~~LiVgV~~d~~v  240 (341)
T 3elb_A          161 SFGKCPGGRNPWTGVSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEV  240 (341)
T ss_dssp             -----------CCCCCCCCCCHHHHHHHCCCCCCCTTCEEEEEEECCTTCCHHHHHHHHHHHTTSSSEEEEEEEECHHHH
T ss_pred             hhccCccccCCCcceecccCCcceeeeeccCCCCCCCCEEEEEecccCCCCHHHHHHHHHHHHhCCCCEEEEEEccCHhh
Confidence            34432  44678889999999999999999999999999999999999999999999999999999  999999999999


Q ss_pred             hhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCchHHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEE
Q 014487          297 SEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQL  376 (423)
Q Consensus       297 ~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~  376 (423)
                      +++||+++|+||++||++++++|++||+|++++|+.++.+++++++||++|||++|...+  ..+.|+|.+++.+|++.+
T Consensus       241 ~~~Kg~~~pi~~~~ER~~~v~~~~~vd~V~v~~~~~l~~~~~~~~~~~~iv~G~d~~~~~--~~g~d~y~~~k~~G~~~~  318 (341)
T 3elb_A          241 NHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGKTEIIPD--RDGSDPYQEPKRRGIFRQ  318 (341)
T ss_dssp             HHHHCTTCCSSCHHHHHHHHHTBTTCCEEEEEECSSCCHHHHHHTTCSEEEECSSCCCCC--TTSCCTTHHHHHHTCEEE
T ss_pred             HhhcCCCCCCCCHHHHHHHHHHcCCCCCEEECCCCcchHHHHHhcCCcEEEECCCCcccc--CCccchHHHHHhCCEEEE
Confidence            999998889999999999999999999999999998889999999999999999987654  356789999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHhchHhH
Q 014487          377 LESPKSITTTSVAQRIIANHEAY  399 (423)
Q Consensus       377 i~~~~~~Stt~Ii~RI~~~~~~y  399 (423)
                      +++++++|||+||+||++||++|
T Consensus       319 i~~~~~~STt~ii~RI~~nr~~~  341 (341)
T 3elb_A          319 IDSGSNLTTDLIVQRIITNRLEY  341 (341)
T ss_dssp             CCCSCCCCHHHHHHHHHC-----
T ss_pred             cCCCCCCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999987

>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}

Probab=100.00  E-value=2.7e-34  Score=271.69  Aligned_cols=156  Identities=33%  Similarity=0.669  Sum_probs=131.7

Q ss_pred             CCCCCCeEEEEcCeeccCCHHHHHHHHHHHhc--CCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEc
Q 014487          251 GPGPNARVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIG  328 (423)
Q Consensus       251 ~~~~~~~iv~~~G~FDl~H~GHi~~L~~A~~~--gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~  328 (423)
                      .+.+..++||++|+||+||.||+++|++|+++  ||+|||||++|+.+.++||  +|+|+++||++++++|++||+|+++
T Consensus        71 ~~~~~~~~V~~~GtFD~~H~GHl~iL~rAk~lf~gD~LIVgV~~D~~v~~~Kg--~pi~s~eER~e~v~~~k~VD~Vvv~  148 (236)
T 3hl4_A           71 TPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKG--FTVMNENERYDAVQHCRYVDEVVRN  148 (236)
T ss_dssp             CCTTSCEEEEEEECCTTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHTC--CCSSCHHHHHHHHHTBTTCSEEESS
T ss_pred             CCCCCCeEEEEeccCCCCCHHHHHHHHHHHHhcCCCeEEEEEcccHHHhhcCC--CCCCCHHHHHHHHHHhCCCCeEEEC
Confidence            34456789999999999999999999999999  5899999999999988887  5999999999999999999999999


Q ss_pred             CCCCchHHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhchHhHHHHHhhhhH
Q 014487          329 APWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAV  408 (423)
Q Consensus       329 ~p~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI~~~~~~y~~r~~~k~~  408 (423)
                      +|+.++.+++++++||+||||+++...   ..+.++|..++..|+++++++++++|||.|++||++++..|++||.+|.-
T Consensus       149 ~p~~l~~d~i~~~~~d~Vv~GDd~~~~---~~~~d~y~~lk~~G~~~~v~rt~giSTT~Ii~RI~~~~~~y~~R~l~rg~  225 (236)
T 3hl4_A          149 APWTLTPEFLAEHRIDFVAHDDIPYSS---AGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGY  225 (236)
T ss_dssp             CCSSCCHHHHHHTTCCEEEEESSCCCC---SSCSCTTHHHHHTTCEEEECCCTTCCHHHHHHHHHHHHHC----------
T ss_pred             CcCcCcHHHHHHcCCCEEEECCccccC---CCchhHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHhHHHHHHHHhcCCC
Confidence            999988999999999999999886543   34567899999999999999999999999999999999999999999965


Q ss_pred             hHH
Q 014487          409 SEK  411 (423)
Q Consensus       409 ~e~  411 (423)
                      +.+
T Consensus       226 ~~~  228 (236)
T 3hl4_A          226 TAK  228 (236)
T ss_dssp             ---
T ss_pred             CHH
Confidence            443

>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}

Probab=99.97  E-value=5.2e-30  Score=242.48  Aligned_cols=145  Identities=42%  Similarity=0.668  Sum_probs=132.1

Q ss_pred             hhhcCCCCCeEEEEecccCcCcHHHHHHHHHHHHh--cCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEe
Q 014487           57 KKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIA  134 (423)
Q Consensus        57 ~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~--~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~  134 (423)
                      +.....+++++||+.|+||++|.||+++|++|+++  +++|+|||++|+.+...|++|+++.+||++++++|+|||+|++
T Consensus        68 ~~~~~~~~~~~V~~~GtFD~~H~GHl~iL~rAk~lf~gD~LIVgV~~D~~v~~~Kg~pi~s~eER~e~v~~~k~VD~Vvv  147 (236)
T 3hl4_A           68 CRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVR  147 (236)
T ss_dssp             HHCCCTTSCEEEEEEECCTTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHTCCCSSCHHHHHHHHHTBTTCSEEES
T ss_pred             hcCCCCCCCeEEEEeccCCCCCHHHHHHHHHHHHhcCCCeEEEEEcccHHHhhcCCCCCCCHHHHHHHHHHhCCCCeEEE
Confidence            33344467889999999999999999999999999  5899999999998877788899999999999999999999999


Q ss_pred             cCCccccHHHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCCcEEEeccCCCCCHHHHHHHHHhccc
Q 014487          135 NAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSME  205 (423)
Q Consensus       135 ~~p~~~~~efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~iSST~Ir~rI~~~~~  205 (423)
                      +.||.++.+|++    +++||+||+|+|+.++.++.+.|+.+++.|+++.+++++++|||+|++||++...
T Consensus       148 ~~p~~l~~d~i~----~~~~d~Vv~GDd~~~~~~~~d~y~~lk~~G~~~~v~rt~giSTT~Ii~RI~~~~~  214 (236)
T 3hl4_A          148 NAPWTLTPEFLA----EHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYD  214 (236)
T ss_dssp             SCCSSCCHHHHH----HTTCCEEEEESSCCCCSSCSCTTHHHHHTTCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             CCcCcCcHHHHH----HcCCCEEEECCccccCCCchhHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHhHH
Confidence            999998888885    6899999999999998888899999999999999999999999999999997643

>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}

Probab=99.95  E-value=6.2e-28  Score=241.27  Aligned_cols=137  Identities=32%  Similarity=0.583  Sum_probs=125.3

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCch
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVT  334 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~  334 (423)
                      .+++|+++|+||+||.||+++|++|+++||+|+|||++|+.+.+.||  .|+++++||++++++|++||+|++++|+..+
T Consensus         6 ~~~~v~~~G~FD~lH~GH~~lL~~A~~l~d~LiVgV~~d~~v~~~K~--~pi~s~eER~~~l~~l~~VD~Vv~f~~~~~~   83 (341)
T 3elb_A            6 RAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKG--PPVFTQEERYKMVQAIKWVDEVVPAAPYVTT   83 (341)
T ss_dssp             CCCEEEEEECCCSCCHHHHHHHHHHHHTSSEEEEEECCHHHHHHHSS--CCSSCHHHHHHHHHHBTTCCEEEETCCSSCC
T ss_pred             CceEEEEEeeCCCCCHHHHHHHHHHHHhCCcCEEEeecCHHHhccCC--CCCCCHHHHHHHHHHcCCCCEEEecCCCCCH
Confidence            36789999999999999999999999999999999999999888887  4999999999999999999999999888788


Q ss_pred             HHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhch
Q 014487          335 KDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANH  396 (423)
Q Consensus       335 ~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI~~~~  396 (423)
                      .+++++++||++|+|+||...   ..+.+.|...+.+|+++++++++++|||+|++||+...
T Consensus        84 ~efi~~~~~d~vV~G~D~~~g---~~~~~~~~~~k~~G~~~~~~~t~g~STT~ii~ri~~~~  142 (341)
T 3elb_A           84 LETLDKYNCDFCVHGNDITLT---VDGRDTYEEVKQAGRYRECKRTQGVSTTDLVGRMLLVT  142 (341)
T ss_dssp             HHHHHHTTCSEEEECSCCCBC---TTSCBTTHHHHHTTCEEECCCCTTCCHHHHHHHHHC--
T ss_pred             HHHHHHhCCCEEEECCCCCCC---CCCcchHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhc
Confidence            999999999999999999765   34567888888999999999999999999999998743

>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}

Probab=99.89  E-value=2.4e-23  Score=180.70  Aligned_cols=129  Identities=29%  Similarity=0.454  Sum_probs=95.2

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEecCCccccHHH
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~~ef  144 (423)
                      +++++++|+|||+|.||+.+|++|+++++.++|++++++.....+.+|+++.+||++++++++++|.++...+|.   +|
T Consensus         1 m~~~~~~G~FDp~H~GH~~li~~a~~~~~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~~~~d~v~~~~~~~---~~   77 (132)
T 2b7l_A            1 MKRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESIRYVDLVIPEKGWG---QK   77 (132)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHHTSSEEEEEEECHHHHHHTTCCCSSCHHHHHHHHHTBTTCCEEEEECCGG---GH
T ss_pred             CeEEEEeeecCcCCHHHHHHHHHHHHhCCcEEEEEECCHHHhccCCCCCCCHHHHHHHHHhcCCCCEEEECCChH---HH
Confidence            358999999999999999999999999999999999988542222268999999999999998899998855553   56


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCCcEEEeccCCCCCHHHHHHHHHhc
Q 014487          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (423)
Q Consensus       145 l~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~iSST~Ir~rI~~~  203 (423)
                      ++. +++++|+++|+|+||..      .++.++..+++..+++...||||.||++|.++
T Consensus        78 ~~~-~~~~~~~~iv~G~D~~~------~~~~L~~~~~v~~i~~~~~iSST~IR~~i~~g  129 (132)
T 2b7l_A           78 EDD-VEKFDVDVFVMGHDWEG------EFDFLKDKCEVIYLKRTEGISTTKIKQELYGK  129 (132)
T ss_dssp             HHH-HHHTTCCEEEECGGGTT------TTGGGTTTSEEEECSSCC--------------
T ss_pred             HHH-HHHcCCCEEEECCCCcC------cHHHHHhCCEEEEECCCCCcCHHHHHHHHHhc
Confidence            665 57789999999999932      34467778899999998889999999999865

>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*

Probab=99.89  E-value=3.9e-23  Score=178.61  Aligned_cols=128  Identities=34%  Similarity=0.495  Sum_probs=105.2

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEecCCccccHHH
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~~ef  144 (423)
                      +++++++|+|||+|.||+.++++|++.+++++|++++++.......+++++.+||++++++++++|.++...++.   +|
T Consensus         1 m~~~~~~G~FDp~H~GH~~li~~a~~~~d~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~~~~d~v~~~~~~~---~~   77 (129)
T 1coz_A            1 MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVIPEKNWE---QK   77 (129)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHTTSSEEEEEEECHHHHHHHTCCCSSCHHHHHHHHTTBTTCCEEEEECCST---TH
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHhcCCCCCCCCHHHHHHHHHhcCCCCEEEeCCCHH---HH
Confidence            357999999999999999999999999999999999987322112268999999999999998899988766654   56


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCCcEEEeccCCCCCHHHHHHHHHh
Q 014487          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILS  202 (423)
Q Consensus       145 l~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~iSST~Ir~rI~~  202 (423)
                      ++. +++++++++|+|+||.      +.++.+++.+++..+++...||||.||++|.+
T Consensus        78 ~~~-l~~~~~~~iv~G~D~~------~~~~~L~~~~~v~~~~~~~~iSST~IR~~i~~  128 (129)
T 1coz_A           78 KQD-IIDHNIDVFVMGDDWE------GKFDFLKDQCEVVYLPRTEGISTTKIKEEIAG  128 (129)
T ss_dssp             HHH-HHHTTCSEEEEEGGGT------TTTGGGTTTSEEEEECCCTTCCHHHHHHTC--
T ss_pred             HHH-HHHhCCcEEEECCCCC------CcHHHHHhCCeEEEcCCCCCcCHHHHHHHHHh
Confidence            655 4678999999999983      23446777889999999889999999998753

>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}

Probab=99.87  E-value=3.9e-22  Score=176.11  Aligned_cols=134  Identities=33%  Similarity=0.434  Sum_probs=88.7

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEecCCccccHHH
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~~ef  144 (423)
                      +++++++|+|||+|.||+.+|++|+++++.++|++++++.....+.++++|.+||+++++++++||.++...|.    +|
T Consensus         2 m~~v~~~G~FD~vH~GH~~li~~a~~~~~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~~~vd~v~~~~~~----~f   77 (143)
T 3glv_A            2 MIRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISELKVVDRAILGHEG----DM   77 (143)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTSSEEEEEECCHHHHHHTTCCCSSCHHHHHHHHTTBTTCSEEEECCTT----CH
T ss_pred             ceEEEEEeecCCCCHHHHHHHHHHHHhCCCcEEEEECCcchhhcCCCCCCCHHHHHHHHHhcCCCCEEEEcCch----hH
Confidence            57899999999999999999999999999999999998865432337899999999999999889999986443    36


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCC-cE--EEecc--CCCCCHHHHHHHHHhccc
Q 014487          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RY--KQIKR--TEGVSSTDIVGRILSSME  205 (423)
Q Consensus       145 l~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g-~~--~~v~r--~~~iSST~Ir~rI~~~~~  205 (423)
                      ++ ++++++++++|+|+||+|+..  ......++.| .+  .....  ...||||.||++|.+..+
T Consensus        78 ~~-~~~~l~~~~iv~G~d~~f~~~--~l~~~~~~~g~~v~vv~~~~~~~~~iSST~IR~~i~~~~~  140 (143)
T 3glv_A           78 MK-TVIEVKPDIITLGYDQKFDEA--ELQSKINKLGITVKIVRISKYDGQLNSSSSVRKKIMELIG  140 (143)
T ss_dssp             HH-HHHHHCCSEEEECTTCHHHHH--HHHHHHHHHTCCCEEEECCCCC------------------
T ss_pred             HH-HHHhcCCCEEEECCCCCCCHH--HHHHHHHHcCCeEEEEEeeccCCCcCCHHHHHHHHHHHhc
Confidence            64 567899999999999988421  1122223233 22  23222  245999999999987654

>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}

Probab=99.84  E-value=6.8e-21  Score=187.83  Aligned_cols=136  Identities=21%  Similarity=0.213  Sum_probs=109.4

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCee---EEEEecch--hh-hcc---CC-CCCCcHHHHHHHHhcCccccEEEe
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDEL---VVGVVSDE--EI-IAN---KG-PPVLSMEERLALVSGLKWVDEVIA  134 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~L---iVgV~sd~--~i-~~~---K~-~pi~t~eER~~~l~~~~~VD~vi~  134 (423)
                      ...|+++|+|||+|.||+.+|++|++.|+.+   .+.++.|+  .. ...   +. ++++|.+||.++++++ +||.++.
T Consensus        20 ~~~vvtiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV~TFdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~l-GVD~v~~   98 (308)
T 3op1_A           20 SDSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKRE-GVEELYL   98 (308)
T ss_dssp             SCEEEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHH-TCCEEEE
T ss_pred             CCeEEEEecCCcccHHHHHHHHHHHHHHHhcCCceEEEEecCCHHHHhCccccCCcccCCCHHHHHHHHHHc-CCCEEEE
Confidence            4589999999999999999999999998542   34444444  32 211   12 5799999999999998 6999987


Q ss_pred             cCCcc-----cc-HHHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCCc--EEEecc----CCCCCHHHHHHHHHh
Q 014487          135 NAPYA-----IT-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR--YKQIKR----TEGVSSTDIVGRILS  202 (423)
Q Consensus       135 ~~p~~-----~~-~efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g~--~~~v~r----~~~iSST~Ir~rI~~  202 (423)
                       .||+     ++ ++|+++++.+++++.+|+|+||+||. +.++.+.|++.|+  +..++.    ...||||.||+.|.+
T Consensus        99 -~~F~~~~a~ls~e~Fv~~ll~~l~~~~ivvG~DfrFG~-r~G~~~~L~~~~~~~V~~v~~~~~~~~~ISST~IR~~L~~  176 (308)
T 3op1_A           99 -LDFSSQFASLTAQEFFATYIKAMNAKIIVAGFDYTFGS-DKKTAEDLKNYFDGEVIIVPPVEDEKGKISSTRIRQAILD  176 (308)
T ss_dssp             -ECCCHHHHTCCHHHHHHHHHHHHTEEEEEEETTCCBTT-TTBCSTTHHHHCSSEEEEECCCBCSSCBCCHHHHHHHHHH
T ss_pred             -ecCCHHHHcCCHHHHHHHHHHHcCCCEEEECcCCCCCC-cCCCHHHHHHhCCCCEEEeCCEecCCceEeHHHHHHHHHc
Confidence             5664     22 58998888899999999999999999 9999899998875  666665    235999999999987


Q ss_pred             c
Q 014487          203 S  203 (423)
Q Consensus       203 ~  203 (423)
                      +
T Consensus       177 G  177 (308)
T 3op1_A          177 G  177 (308)
T ss_dssp             T
T ss_pred             C
Confidence            6

>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*

Probab=99.83  E-value=2.1e-20  Score=161.32  Aligned_cols=127  Identities=34%  Similarity=0.489  Sum_probs=106.7

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCchH
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK  335 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~~  335 (423)
                      ++++++.|+||++|.||+.++++|++.+|.++|+++.|+... .|++ .|+++.+||+.++++|++||.|++..++..+.
T Consensus         1 m~~~~~~G~FDp~H~GH~~li~~a~~~~d~~~v~v~~~~~~~-~~~~-~~l~~~~eR~~~l~~~~~~d~v~~~~~~~~~~   78 (129)
T 1coz_A            1 MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNL-QKQK-KAYHSYEHRKLILETIRYVDEVIPEKNWEQKK   78 (129)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHTTSSEEEEEEECHHHHH-HHTC-CCSSCHHHHHHHHTTBTTCCEEEEECCSTTHH
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHh-cCCC-CCCCCHHHHHHHHHhcCCCCEEEeCCCHHHHH
Confidence            368999999999999999999999999999999999997322 3554 68999999999999999999999876666666


Q ss_pred             HHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHH
Q 014487          336 DMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRII  393 (423)
Q Consensus       336 ~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI~  393 (423)
                      +.++++++++++.|.||..+ +        ...+..|.+..+++...+|||.|.++|.
T Consensus        79 ~~l~~~~~~~iv~G~D~~~~-~--------~~L~~~~~v~~~~~~~~iSST~IR~~i~  127 (129)
T 1coz_A           79 QDIIDHNIDVFVMGDDWEGK-F--------DFLKDQCEVVYLPRTEGISTTKIKEEIA  127 (129)
T ss_dssp             HHHHHTTCSEEEEEGGGTTT-T--------GGGTTTSEEEEECCCTTCCHHHHHHTC-
T ss_pred             HHHHHhCCcEEEECCCCCCc-H--------HHHHhCCeEEEcCCCCCcCHHHHHHHHH
Confidence            77889999999999998532 1        1245578899999999999999998764

>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}

Probab=99.83  E-value=3e-20  Score=161.15  Aligned_cols=129  Identities=28%  Similarity=0.487  Sum_probs=96.5

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCchH
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK  335 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~~  335 (423)
                      ++++++.|+||++|.||+.+|++|++++|.++|+++.|+... .+++ .|+++.+||+.++++|++||.|++..++..+.
T Consensus         1 m~~~~~~G~FDp~H~GH~~li~~a~~~~~~~~v~v~~~~~~~-~~~~-~~l~~~~eR~~~l~~~~~~d~v~~~~~~~~~~   78 (132)
T 2b7l_A            1 MKRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQ-IKHK-KSYYDYEQRKMMLESIRYVDLVIPEKGWGQKE   78 (132)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHHTSSEEEEEEECHHHHH-HTTC-CCSSCHHHHHHHHHTBTTCCEEEEECCGGGHH
T ss_pred             CeEEEEeeecCcCCHHHHHHHHHHHHhCCcEEEEEECCHHHh-ccCC-CCCCCHHHHHHHHHhcCCCCEEEECCChHHHH
Confidence            368999999999999999999999999999999999997442 3454 68999999999999999999999866555566


Q ss_pred             HHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhc
Q 014487          336 DMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIAN  395 (423)
Q Consensus       336 ~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI~~~  395 (423)
                      +.+++++|+++|.|.|+..+.         ...+..|.+..++....+|||.|.++|.+.
T Consensus        79 ~~~~~~~~~~iv~G~D~~~~~---------~~L~~~~~v~~i~~~~~iSST~IR~~i~~g  129 (132)
T 2b7l_A           79 DDVEKFDVDVFVMGHDWEGEF---------DFLKDKCEVIYLKRTEGISTTKIKQELYGK  129 (132)
T ss_dssp             HHHHHTTCCEEEECGGGTTTT---------GGGTTTSEEEECSSCC--------------
T ss_pred             HHHHHcCCCEEEECCCCcCcH---------HHHHhCCEEEEECCCCCcCHHHHHHHHHhc
Confidence            778899999999999984421         124567889999998899999999988654

>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A

Probab=99.79  E-value=2.6e-19  Score=175.81  Aligned_cols=130  Identities=22%  Similarity=0.294  Sum_probs=101.1

Q ss_pred             EEEecccCcCcHHHHHHHHHHHHhcCe-----eEEEEecchhhhcc-CCCCCCcHHHHHHHHhcCccccEEEecCCc---
Q 014487           68 VYMDGCFDLMHYGHANALRQAKALGDE-----LVVGVVSDEEIIAN-KGPPVLSMEERLALVSGLKWVDEVIANAPY---  138 (423)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~-----LiVgV~sd~~i~~~-K~~pi~t~eER~~~l~~~~~VD~vi~~~p~---  138 (423)
                      |+++|+||++|.||+++|++|+++|+.     +++.+.+++.+... +.+++++.+||+++++++. ++.++.   |   
T Consensus         2 vvtiG~FDgvH~GH~~ll~~a~~~a~~~~~~~vVvtFdphP~~l~~~~~~~l~~~~eR~~ll~~lg-~~~v~~---F~~~   77 (293)
T 1mrz_A            2 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSRYA-RTVVLD---FFRI   77 (293)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTTCCCBSSCHHHHHHHHTTTS-CEEEEC---HHHH
T ss_pred             EEEEeeCccccHHHHHHHHHHHHHHHHcCCeEEEEEecCCHHHhCCCCCCCCCCHHHHHHHHHhCC-CEEEEE---hHHh
Confidence            789999999999999999999999854     34444444433222 2367999999999999986 555544   4   


Q ss_pred             --cccHHHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCC-cEEEeccC----CCCCHHHHHHHHHhc
Q 014487          139 --AITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKRT----EGVSSTDIVGRILSS  203 (423)
Q Consensus       139 --~~~~efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~r~----~~iSST~Ir~rI~~~  203 (423)
                        ...++|+++++  ++++++|+|+||+||.++.++.+.|++.| ++..++..    ..||||.||+.|.++
T Consensus        78 a~ls~~~Fi~~il--l~~~~iVvG~Df~fG~~~~g~~~~L~~~G~~V~~v~~~~~~~~~iSST~IR~~L~~G  147 (293)
T 1mrz_A           78 KDLTPEGFVERYL--SGVSAVVVGRDFRFGKNASGNASFLRKKGVEVYEIEDVVVQGKRVSSSLIRNLVQEG  147 (293)
T ss_dssp             TTCCHHHHHHHHC--TTCCEEEEETTCCBSGGGCBCHHHHHHTTCEEEEECCCEETTEECCHHHHHHHHHTT
T ss_pred             hcCCHHHHHHHHh--cCCCEEEECCCCCCCCCCCCCHHHHHhCCCEEEEECCEEeCCccccHhHHHHHHhcC
Confidence              12258888766  89999999999999999888888888754 67777753    469999999999876

>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}

Probab=99.79  E-value=1.7e-19  Score=159.21  Aligned_cols=133  Identities=22%  Similarity=0.354  Sum_probs=91.7

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCchH
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK  335 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~~  335 (423)
                      ++++++.|+||++|.||+.+|++|++++|.++|+|+.|+.+.+ |++ +|+++.+||+.++++|++||.|++.+|.+ ..
T Consensus         2 m~~v~~~G~FD~vH~GH~~li~~a~~~~~~~~v~v~~~~~~~~-~~~-~~l~~~~eR~~~l~~~~~vd~v~~~~~~~-f~   78 (143)
T 3glv_A            2 MIRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARN-NGK-IPIFDENSRLALISELKVVDRAILGHEGD-MM   78 (143)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTSSEEEEEECCHHHHHH-TTC-CCSSCHHHHHHHHTTBTTCSEEEECCTTC-HH
T ss_pred             ceEEEEEeecCCCCHHHHHHHHHHHHhCCCcEEEEECCcchhh-cCC-CCCCCHHHHHHHHHhcCCCCEEEEcCchh-HH
Confidence            6889999999999999999999999999999999999988765 544 79999999999999999999999988776 45


Q ss_pred             HHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCe---EEEeCC--CCCCCHHHHHHHHHhch
Q 014487          336 DMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGI---FQLLES--PKSITTTSVAQRIIANH  396 (423)
Q Consensus       336 ~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~---~~~i~~--~~~~Stt~Ii~RI~~~~  396 (423)
                      +++++++++++|+|.|+..+     ..+.....+..|.   .+....  ...+|||.|.+.|.+.+
T Consensus        79 ~~~~~l~~~~iv~G~d~~f~-----~~~l~~~~~~~g~~v~vv~~~~~~~~~iSST~IR~~i~~~~  139 (143)
T 3glv_A           79 KTVIEVKPDIITLGYDQKFD-----EAELQSKINKLGITVKIVRISKYDGQLNSSSSVRKKIMELI  139 (143)
T ss_dssp             HHHHHHCCSEEEECTTCHHH-----HHHHHHHHHHHTCCCEEEECCCCC-----------------
T ss_pred             HHHHhcCCCEEEECCCCCCC-----HHHHHHHHHHcCCeEEEEEeeccCCCcCCHHHHHHHHHHHh
Confidence            68999999999999986321     1112222333442   222222  35699999999987654

>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}

Probab=99.78  E-value=2.7e-19  Score=179.03  Aligned_cols=137  Identities=16%  Similarity=0.228  Sum_probs=108.2

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCe---eEEEEecchh---hh-ccC-CCCCCcHHHHHHHHhcCccccEEEecC
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDE---LVVGVVSDEE---II-ANK-GPPVLSMEERLALVSGLKWVDEVIANA  136 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~---LiVgV~sd~~---i~-~~K-~~pi~t~eER~~~l~~~~~VD~vi~~~  136 (423)
                      .+.|+++|+|||+|.||+.+|++|++.++.   ..++++.|+.   +. +.+ .+++++.+||+++++++ +||.++. .
T Consensus        15 ~~~vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vvvtFdphP~~v~~~~~~~~~L~~~~eR~~ll~~~-gVD~v~v-~   92 (338)
T 2x0k_A           15 DNSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAESF-GIDGVLV-I   92 (338)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCHHHHHSTTCSCCBSSCHHHHHHHHHHT-TCSEEEE-E
T ss_pred             CCeEEEEEeCCcccHHHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHcCCccCCCCCCCHHHHHHHHHhc-CCCEEEE-c
Confidence            348999999999999999999999998854   3566666652   22 222 25699999999999998 6999987 4


Q ss_pred             Ccc-----cc-HHHHHH-HHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCC----cEEEeccC----CCCCHHHHHHHHH
Q 014487          137 PYA-----IT-EQFMNR-LFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKRT----EGVSSTDIVGRIL  201 (423)
Q Consensus       137 p~~-----~~-~efl~~-ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g----~~~~v~r~----~~iSST~Ir~rI~  201 (423)
                      ||+     ++ ++|+++ ++++++++++|+|+||+||.++.++.+.|++.+    ++..++..    ..||||.||+.|.
T Consensus        93 ~F~~~~a~ls~e~Fi~~il~~~l~~~~ivvG~Df~FG~~r~g~~~~L~~~~~~g~~V~~v~~~~~~~~~ISST~IR~~L~  172 (338)
T 2x0k_A           93 DFTRELSGTSPEKYVEFLLEDTLHASHVVVGANFTFGENAAGTADSLRQICQSRLTVDVIDLLDDEGVRISSTTVREFLS  172 (338)
T ss_dssp             CTTTSSSSCCHHHHHHHCCCCCTCEEEEEEETTCEESGGGCEEHHHHHHHTTTTSEEEEECCCEETTEECSHHHHHHHHH
T ss_pred             cccHHHHhCCHHHHHHHHHHhhcCCCEEEEeecCCCCCCCCCCHHHHHHHhcCCeEEEEECcEecCCcccccchHHHHHh
Confidence            552     22 589988 456799999999999999999998888888765    45666652    3599999999998


Q ss_pred             hc
Q 014487          202 SS  203 (423)
Q Consensus       202 ~~  203 (423)
                      ++
T Consensus       173 ~G  174 (338)
T 2x0k_A          173 EG  174 (338)
T ss_dssp             TT
T ss_pred             cC
Confidence            76

>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*

Probab=99.74  E-value=1.5e-18  Score=155.60  Aligned_cols=127  Identities=19%  Similarity=0.221  Sum_probs=97.0

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh-hcccCeeEEcCCCCch
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVT  334 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~-~~~Vd~Vvi~~p~~~~  334 (423)
                      +++++++|+|||+|.||++++++|++++|+|+|++++|.    .|   +|+++.+||+.+++. ++.+|.|.+....+++
T Consensus         2 m~i~i~~GsFDPiH~GHl~ii~~A~~~~D~viv~v~~~~----~K---~~~~~~~eR~~ml~~a~~~~~~v~v~~~~~l~   74 (157)
T 3nv7_A            2 QKVGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSS----AK---NPMFSLDERLKMIQLATKSFKNVECVAFEGLL   74 (157)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEECCG----GG---CCSSCHHHHHHHHHHHHTTSTTEEEEEECSCH
T ss_pred             CEEEEEEEEcCCCCHHHHHHHHHHHHhCCceEEEEccCC----CC---CCCCCHHHHHHHHHHHhcCCCcEEEEecCchH
Confidence            478999999999999999999999999999999999885    34   589999999999987 7899998876555678


Q ss_pred             HHHHhhcCccEEEec----CCcCCCCCCCCCCChHHHHHhCC---eEEEeCCCC---CCCHHHHHHHHHhc
Q 014487          335 KDMITTFNICLVVHG----TVSETNTPLTGQSDPYEVAKSMG---IFQLLESPK---SITTTSVAQRIIAN  395 (423)
Q Consensus       335 ~~~i~~~~~d~vv~G----~d~~~~~~~~~~~d~~~~~k~~G---~~~~i~~~~---~~Stt~Ii~RI~~~  395 (423)
                      .+++++++||++|+|    +||+..      .+.....+..+   ..++++..+   .+|||.|.+.+...
T Consensus        75 ~~~~~~~~~~~ivrG~r~~~D~~ye------~~~a~~n~~l~~~ietv~l~~~~~~~~iSSt~vRe~~~~g  139 (157)
T 3nv7_A           75 AYLAKEYHCKVLVRGLRVVSDFEYE------LQMGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIAHK  139 (157)
T ss_dssp             HHHHHHTTCCCBCCCCSCCCCHHHH------HHHHHHHHHSSCCCCCCCCCCCHHHHTCCHHHHHHHHHTT
T ss_pred             HHHHHHcCCCEEEECCcccchhhhh------HHHHHHHHHhCCCceEEEEcCCcccceeeHHHHHHHHHcC
Confidence            899999999999999    554321      11111122322   233444443   79999888876543

>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*

Probab=99.71  E-value=1.2e-17  Score=153.99  Aligned_cols=129  Identities=22%  Similarity=0.259  Sum_probs=93.5

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhc-CccccEEEecCCcc-ccH
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYA-ITE  142 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~vi~~~p~~-~~~  142 (423)
                      ++++++.|+|||+|.||+.++++|++++|+++|+|.+++    .| +|+++.+||+++++. ++++|.+.. .+|+ ++.
T Consensus        22 mki~v~~GsFDpiH~GHl~li~~A~~~~d~viv~v~~~p----~K-~~l~s~eeR~~ml~~~~~~v~~v~v-~~f~~~~~   95 (187)
T 3k9w_A           22 MVVAVYPGTFDPLTRGHEDLVRRASSIFDTLVVGVADSR----AK-KPFFSLEERLKIANEVLGHYPNVKV-MGFTGLLK   95 (187)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECCG----GG-CCSSCHHHHHHHHHHHHTTCTTEEE-EEESSCHH
T ss_pred             cEEEEEEEeCCcCcHHHHHHHHHHHHHCCcEEEEEecCC----cc-CCCCCHHHHHHHHHHHhccCCcEEE-EechhhHH
Confidence            679999999999999999999999999999999999864    33 589999999999998 578998876 3342 334


Q ss_pred             HHHHHHHhhcCccEEEEc----CCCCCCCCCCcHHHHHHhCCcEEEeccC---CCCCHHHHHHHHHhc
Q 014487          143 QFMNRLFNEHKIDYIIHG----DDPCLLPDGTDAYALAKKVGRYKQIKRT---EGVSSTDIVGRILSS  203 (423)
Q Consensus       143 efl~~ll~~~~~d~VV~G----~D~~~g~~g~~~~~~lk~~g~~~~v~r~---~~iSST~Ir~rI~~~  203 (423)
                      +|    +++++++++|+|    .||.+...-......+....+.+.+...   ..||||.||+++..+
T Consensus        96 d~----l~~l~~~~iv~G~r~~~Df~~E~~la~~nr~l~~~ietv~l~~~~~~~~ISST~IRe~~~~g  159 (187)
T 3k9w_A           96 DF----VRANDARVIVRGLRAVSDFEYEFQMAGMNRYLLPDVETMFMTPSDQYQFISGTIVREIAQLG  159 (187)
T ss_dssp             HH----HHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHCTTCEEEEECCCGGGTTCCHHHHHHHHHTT
T ss_pred             HH----HHHcCCCEEEECCCcccccchHHHHHHHHHHhCCCCcEEEEecccccccccHHHHHHHHHcC
Confidence            44    457899999999    6664211000000011112234444443   369999999999865

>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}

Probab=99.70  E-value=1.7e-17  Score=149.54  Aligned_cols=128  Identities=16%  Similarity=0.203  Sum_probs=93.0

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCchH
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK  335 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~~  335 (423)
                      +++++++|+|||+|.||++++++|++++|+|+|++++|.    .|   +|+++.+||+.+++.+...|.|.+......+.
T Consensus         5 m~i~i~~GsFDPiH~GHl~li~~A~~~~d~viv~v~~~~----~K---~~~~~~~~R~~m~~~~~~~~~v~V~~~~~l~~   77 (162)
T 4f3r_A            5 KPIAIYPGTFDPLTNGHVDIIERALPLFNKIIVACAPTS----RK---DPHLKLEERVNLIADVLTDERVEVLPLTGLLV   77 (162)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHGGGCSEEEEEECCC-------------CCHHHHHHHHHHHCCCTTEEEEECCSCHH
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHHHCCcEEEEEecCC----cc---CCCCCHHHHHHHHHHhhCCCCEEEEeccchHH
Confidence            589999999999999999999999999999999999874    34   58999999999998865559887766666888


Q ss_pred             HHHhhcCccEEEec----CCcCCCCCCCCCCChHHHHHhC--C-eEEEeCCC---CCCCHHHHHHHHHhch
Q 014487          336 DMITTFNICLVVHG----TVSETNTPLTGQSDPYEVAKSM--G-IFQLLESP---KSITTTSVAQRIIANH  396 (423)
Q Consensus       336 ~~i~~~~~d~vv~G----~d~~~~~~~~~~~d~~~~~k~~--G-~~~~i~~~---~~~Stt~Ii~RI~~~~  396 (423)
                      +++++++++++|+|    .||+..      .......+..  + ..+++...   ..+|||.|.+++....
T Consensus        78 ~~~~~~~~~~~v~G~r~~~Df~~e------~~~a~~nr~l~~~ietv~l~~~~~~~~ISST~IRe~~~~g~  142 (162)
T 4f3r_A           78 DFAKTHQANFILRGLRAVSDFDYE------FQLAHMNYQLSPEIETIFLPAREGYSYVSGTMVREIVTLGG  142 (162)
T ss_dssp             HHHHHTTCCEEEEEECSHHHHHHH------HHHHHHHHHHCTTCEEEEEECCGGGSSCCHHHHHHHHHTTC
T ss_pred             HHHHHcCCCEEEECCCchhhhhhH------HHHHHHHHHhCCCccEEEEECCcccccccHHHHHHHHHcCC
Confidence            99999999999999    444221      0000111221  2 33444433   3799998888776543

>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A

Probab=99.69  E-value=3.5e-17  Score=145.53  Aligned_cols=128  Identities=16%  Similarity=0.230  Sum_probs=91.8

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhc-CccccEEEecCCcc-ccHH
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYA-ITEQ  143 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~vi~~~p~~-~~~e  143 (423)
                      ++++++|+|||+|.||+.++++|++.+|+++++++.++    .| +++++.++|++|++. +.++|.+.. .+|+ ++.+
T Consensus         2 ~i~i~~GsFDpvH~GH~~l~~~a~~~~d~v~v~~~~~p----~k-~~~~~~~~R~~ml~~a~~~~~~v~v-~~~~~~~~~   75 (158)
T 1qjc_A            2 KRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASP----SK-KPMFTLEERVALAQQATAHLGNVEV-VGFSDLMAN   75 (158)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEESCC----SS-CCSSCHHHHHHHHHHHTTTCTTEEE-EEECSCHHH
T ss_pred             CEEEEEecCCCCCHHHHHHHHHHHHhCCEEEEEECCCC----CC-CCCCCHHHHHHHHHHHHhcCCCeEE-cccchHHHH
Confidence            57999999999999999999999999999999998864    34 478999999999995 678887765 2332 3333


Q ss_pred             HHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHH-HhCC----cEEEeccC--CCCCHHHHHHHHHhc
Q 014487          144 FMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALA-KKVG----RYKQIKRT--EGVSSTDIVGRILSS  203 (423)
Q Consensus       144 fl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~l-k~~g----~~~~v~r~--~~iSST~Ir~rI~~~  203 (423)
                          ++++++++++++|.|+.++.........+ +..+    .+..++..  ..||||.||++|.++
T Consensus        76 ----~l~~l~~~~~v~G~d~~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g  138 (158)
T 1qjc_A           76 ----FARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQ  138 (158)
T ss_dssp             ----HHHHTTCCEEEEECCTTCCHHHHHHHHHHHHHHCTTSEEEEECCCGGGTTCCHHHHHHHHHTT
T ss_pred             ----HHHHcCCCEEEEeccchhhhHHHHHHHHhCccCCCCCCEEEEECCCCCCccCHHHHHHHHHcC
Confidence                44678899999999876543221111111 2221    22233222  359999999999866

>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*

Probab=99.68  E-value=1.3e-16  Score=146.87  Aligned_cols=132  Identities=17%  Similarity=0.200  Sum_probs=98.7

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh-hcccCeeEEcCCCCch
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVT  334 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~-~~~Vd~Vvi~~p~~~~  334 (423)
                      ++++++.|+||++|.||+.++++|++++|+|+|+|.+|.    .|   +|+++.+||+.+++. ++.+|.|.+.+..+.+
T Consensus        22 mki~v~~GsFDpiH~GHl~li~~A~~~~d~viv~v~~~p----~K---~~l~s~eeR~~ml~~~~~~v~~v~v~~f~~~~   94 (187)
T 3k9w_A           22 MVVAVYPGTFDPLTRGHEDLVRRASSIFDTLVVGVADSR----AK---KPFFSLEERLKIANEVLGHYPNVKVMGFTGLL   94 (187)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECCG----GG---CCSSCHHHHHHHHHHHHTTCTTEEEEEESSCH
T ss_pred             cEEEEEEEeCCcCcHHHHHHHHHHHHHCCcEEEEEecCC----cc---CCCCCHHHHHHHHHHHhccCCcEEEEechhhH
Confidence            689999999999999999999999999999999999873    24   589999999999988 6899999886655678


Q ss_pred             HHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhC--C-eEEEeCCC---CCCCHHHHHHHHHhch
Q 014487          335 KDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSM--G-IFQLLESP---KSITTTSVAQRIIANH  396 (423)
Q Consensus       335 ~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~--G-~~~~i~~~---~~~Stt~Ii~RI~~~~  396 (423)
                      .+++++++++++|+|.+...+ |..+ .......+..  + ..+++...   ..+|||.|.+++....
T Consensus        95 ~d~l~~l~~~~iv~G~r~~~D-f~~E-~~la~~nr~l~~~ietv~l~~~~~~~~ISST~IRe~~~~g~  160 (187)
T 3k9w_A           95 KDFVRANDARVIVRGLRAVSD-FEYE-FQMAGMNRYLLPDVETMFMTPSDQYQFISGTIVREIAQLGG  160 (187)
T ss_dssp             HHHHHHTTCSEEEEECCTTSC-HHHH-HHHHHHHHHHCTTCEEEEECCCGGGTTCCHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCEEEECCCcccc-cchH-HHHHHHHHHhCCCCcEEEEecccccccccHHHHHHHHHcCC
Confidence            899999999999999442211 1000 0001111222  2 33445433   4799999998887644

>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3

Probab=99.68  E-value=6.7e-17  Score=145.75  Aligned_cols=129  Identities=16%  Similarity=0.152  Sum_probs=91.7

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhc-CccccEEEecCCccccHHH
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYAITEQF  144 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~vi~~~p~~~~~ef  144 (423)
                      ++++++|+|||+|.||+.++++|++.+|+++|.+..++    .| +++++.+||++|++. +..+|.+.. .+++   +|
T Consensus         3 ~i~i~~GsFDpvH~GH~~li~~a~~~~d~v~v~~~~~p----~k-~~l~~~~~R~~ml~~a~~~~~~v~v-~~~e---~~   73 (169)
T 1o6b_A            3 SIAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNS----SK-KPLFSVEERCELLREVTKDIPNITV-ETSQ---GL   73 (169)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCC----SS-CCSSCHHHHHHHHHHHHTTCTTEEE-EECS---SC
T ss_pred             cEEEEEEeeCCCCHHHHHHHHHHHHhCCEEEEEECCCC----cc-CCCCCHHHHHHHHHHHHhcCCCEEE-cccc---hH
Confidence            57999999999999999999999999999888777542    34 578999999999995 467777655 2332   23


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHh----CCcEEEeccC---CCCCHHHHHHHHHhc
Q 014487          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK----VGRYKQIKRT---EGVSSTDIVGRILSS  203 (423)
Q Consensus       145 l~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~----~g~~~~v~r~---~~iSST~Ir~rI~~~  203 (423)
                      ..+++++++++++++|.|+.++.........+.+    ..+...+...   ..||||.||+++.++
T Consensus        74 ~~~~l~~l~~~~~i~G~d~~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~l~~G  139 (169)
T 1o6b_A           74 LIDYARRKNAKAILRGLRAVSDFEYEMQGTSVNRVLDESIETFFMMANNQYSFLSSSIVKEVARYD  139 (169)
T ss_dssp             HHHHHHHTTCSEEEEEECSGGGHHHHHHHHHHHHHHCTTSEEEEEECCSTTTTCCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCEEEEcCccccchHHHHHHHHHhccccCCCCEEEEECCCCCCcCcHHHHHHHHHcC
Confidence            3334467889999999998776433222222222    1123332222   359999999999876

>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*

Probab=99.68  E-value=1.1e-17  Score=150.14  Aligned_cols=126  Identities=20%  Similarity=0.222  Sum_probs=90.5

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhc-CccccEEEecCCcc-ccH
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYA-ITE  142 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~vi~~~p~~-~~~  142 (423)
                      ++++++.|+||++|.||+.++++|++++|+|+|++.+++    .| +|+++.+||++|++. ++.++.+.. .+|+ ...
T Consensus         2 m~i~i~~GsFDPiH~GHl~ii~~A~~~~D~viv~v~~~~----~K-~~~~~~~eR~~ml~~a~~~~~~v~v-~~~~~l~~   75 (157)
T 3nv7_A            2 QKVGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSS----AK-NPMFSLDERLKMIQLATKSFKNVEC-VAFEGLLA   75 (157)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEECCG----GG-CCSSCHHHHHHHHHHHHTTSTTEEE-EEECSCHH
T ss_pred             CEEEEEEEEcCCCCHHHHHHHHHHHHhCCceEEEEccCC----CC-CCCCCHHHHHHHHHHHhcCCCcEEE-EecCchHH
Confidence            358999999999999999999999999999999998875    34 589999999999987 667787654 2232 234


Q ss_pred             HHHHHHHhhcCccEEEEc----CCCCCCCCCCcHHHHHHhC---CcEEEeccCC---CCCHHHHHHHHHhc
Q 014487          143 QFMNRLFNEHKIDYIIHG----DDPCLLPDGTDAYALAKKV---GRYKQIKRTE---GVSSTDIVGRILSS  203 (423)
Q Consensus       143 efl~~ll~~~~~d~VV~G----~D~~~g~~g~~~~~~lk~~---g~~~~v~r~~---~iSST~Ir~rI~~~  203 (423)
                      +|+    ++++|+++|.|    .||.+..+   ....-+..   .+.+.++.++   .+|||.||+.+..+
T Consensus        76 ~~~----~~~~~~~ivrG~r~~~D~~ye~~---~a~~n~~l~~~ietv~l~~~~~~~~iSSt~vRe~~~~g  139 (157)
T 3nv7_A           76 YLA----KEYHCKVLVRGLRVVSDFEYELQ---MGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIAHK  139 (157)
T ss_dssp             HHH----HHTTCCCBCCCCSCCCCHHHHHH---HHHHHHHSSCCCCCCCCCCCHHHHTCCHHHHHHHHHTT
T ss_pred             HHH----HHcCCCEEEECCcccchhhhhHH---HHHHHHHhCCCceEEEEcCCcccceeeHHHHHHHHHcC
Confidence            554    57899999999    77632100   00011122   1333344443   69999999998755

>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}

Probab=99.67  E-value=4.4e-17  Score=146.84  Aligned_cols=130  Identities=19%  Similarity=0.213  Sum_probs=86.3

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEecCCccccHHH
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~~ef  144 (423)
                      ++++++.|+||++|.||+.++++|++++|+|+|++..++    .| +|+++.+||++|++.+...+.+........+.++
T Consensus         5 m~i~i~~GsFDPiH~GHl~li~~A~~~~d~viv~v~~~~----~K-~~~~~~~~R~~m~~~~~~~~~v~V~~~~~l~~~~   79 (162)
T 4f3r_A            5 KPIAIYPGTFDPLTNGHVDIIERALPLFNKIIVACAPTS----RK-DPHLKLEERVNLIADVLTDERVEVLPLTGLLVDF   79 (162)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHGGGCSEEEEEECCC-----------CCHHHHHHHHHHHCCCTTEEEEECCSCHHHH
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHHHCCcEEEEEecCC----cc-CCCCCHHHHHHHHHHhhCCCCEEEEeccchHHHH
Confidence            468999999999999999999999999999999999775    34 6899999999999875444655442212234455


Q ss_pred             HHHHHhhcCccEEEEc----CCCCCCCCCCcHHHHHHhCCcEEEeccCC---CCCHHHHHHHHHhc
Q 014487          145 MNRLFNEHKIDYIIHG----DDPCLLPDGTDAYALAKKVGRYKQIKRTE---GVSSTDIVGRILSS  203 (423)
Q Consensus       145 l~~ll~~~~~d~VV~G----~D~~~g~~g~~~~~~lk~~g~~~~v~r~~---~iSST~Ir~rI~~~  203 (423)
                      +    ++++++++|.|    .||.....-......+....+.+.+...+   .||||.||+++..+
T Consensus        80 ~----~~~~~~~~v~G~r~~~Df~~e~~~a~~nr~l~~~ietv~l~~~~~~~~ISST~IRe~~~~g  141 (162)
T 4f3r_A           80 A----KTHQANFILRGLRAVSDFDYEFQLAHMNYQLSPEIETIFLPAREGYSYVSGTMVREIVTLG  141 (162)
T ss_dssp             H----HHTTCCEEEEEECSHHHHHHHHHHHHHHHHHCTTCEEEEEECCGGGSSCCHHHHHHHHHTT
T ss_pred             H----HHcCCCEEEECCCchhhhhhHHHHHHHHHHhCCCccEEEEECCcccccccHHHHHHHHHcC
Confidence            5    56799999999    55521100000000111122344444443   79999999998865

>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*

Probab=99.66  E-value=1e-16  Score=146.80  Aligned_cols=133  Identities=19%  Similarity=0.083  Sum_probs=99.1

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhc--CeeEEEEecchhhhccCC-CCCCcHHHHHHHHhc-CccccEEEecCCcc--
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDEVIANAPYA--  139 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~-~~~VD~vi~~~p~~--  139 (423)
                      ++++++|+|||+|.||+.++++|++.+  +.+++++++++.   .|+ +++++.+||++|++. ++++|.+.. .+|+  
T Consensus         3 ~i~i~~GsFDPvH~GH~~li~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~~R~~ml~~~~~~~~~v~v-~~~e~~   78 (189)
T 2qtr_A            3 KIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPP---HKQGRNITSVESRLQMLELATEAEEHFSI-CLEELS   78 (189)
T ss_dssp             EEEEEEECCSSCCHHHHC-CHHHHHHTTCSEEEEEECSSCT---TCTTSCCCCHHHHHHHHHHHHTTCTTEEE-CCTGGG
T ss_pred             eEEEEecCcccccHHHHHHHHHHHHHcCCCEEEEEECCCCC---CccCCCCCCHHHHHHHHHHHhCCCCCEEE-ehHHhc
Confidence            578999999999999999999999998  899999988763   343 579999999999995 667887766 4453  


Q ss_pred             -----ccHHHHHHHHhhcCcc---EEEEcCCCCCCCCCCcHHHHHHhCCcEEEeccC-----------------CCCCHH
Q 014487          140 -----ITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT-----------------EGVSST  194 (423)
Q Consensus       140 -----~~~efl~~ll~~~~~d---~VV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~-----------------~~iSST  194 (423)
                           ++.++++.+-.++ |+   ++|+|.|+.++..+-+.++.+.+.+.+..++|.                 ..||||
T Consensus        79 ~~~~~~~~~~l~~l~~~~-p~~~~~~v~G~D~~~~~~~w~~~~~l~~~~~~~v~~r~~~~~~~~~~v~~~~~~~~~iSST  157 (189)
T 2qtr_A           79 RKGPSYTYDTMLQLTKKY-PDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSS  157 (189)
T ss_dssp             SCSCCCHHHHHHHHHHHC-TTCEEEEEEEHHHHHHGGGSTTHHHHTTTCEEEEECCTTCCCCCSSCCEEECCCCCCCCHH
T ss_pred             CCCCCCHHHHHHHHHHHC-CCCCEEEEEehhhhhhhhccCCHHHHHHhCCEEEEECCCCCccCCceEEEEcCCCCccCHH
Confidence                 4455655443333 33   399999987665544456777777766555441                 259999


Q ss_pred             HHHHHHHhc
Q 014487          195 DIVGRILSS  203 (423)
Q Consensus       195 ~Ir~rI~~~  203 (423)
                      .||+++.++
T Consensus       158 ~IR~~l~~g  166 (189)
T 2qtr_A          158 LLRERYKEK  166 (189)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            999999865

>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*

Probab=99.65  E-value=1.7e-15  Score=139.67  Aligned_cols=132  Identities=19%  Similarity=0.096  Sum_probs=92.7

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhc--CeeEEEEecchhhhccCC-CCCCcHHHHHHHHh-cCccccEEEecCCcc--
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVS-GLKWVDEVIANAPYA--  139 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~-~~~~VD~vi~~~p~~--  139 (423)
                      ++++++|+|||+|.||+.++++|++.+  +.+++++++++.   .|. +++++.++|++|++ ++++++.+.. .+|+  
T Consensus         8 ~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~~R~~ml~~a~~~~~~v~v-~~~e~~   83 (194)
T 1kam_A            8 KIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPP---HKQNEDYTDSFHRVEMLKLAIQSNPSFKL-ELVEME   83 (194)
T ss_dssp             EEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC------------CHHHHHHHHHHHHTTCTTEEE-CCGGGS
T ss_pred             EEEEEEeccccccHHHHHHHHHHHHHhCCCEEEEEECCCCC---CcCCcCCCCHHHHHHHHHHHHcCCCCeEE-eHHHhc
Confidence            578999999999999999999999998  889998987763   343 57899999999999 4778887766 3443  


Q ss_pred             -----ccHHHHHHHHhhcCcc---EEEEcCCCCCC-CCCCcHHHHHHhCCcEEEeccC-----------------CCCCH
Q 014487          140 -----ITEQFMNRLFNEHKID---YIIHGDDPCLL-PDGTDAYALAKKVGRYKQIKRT-----------------EGVSS  193 (423)
Q Consensus       140 -----~~~efl~~ll~~~~~d---~VV~G~D~~~g-~~g~~~~~~lk~~g~~~~v~r~-----------------~~iSS  193 (423)
                           ++.++++.+-.++ |+   ++|+|.|+.++ ..|.+ ++.+.+...+..+.|.                 ..|||
T Consensus        84 ~~~~~~t~~~l~~l~~~~-p~~~~~~v~G~D~~~~~~~W~~-~e~i~~~~~~~v~~R~g~~~~l~~~i~~~~~~~~~ISS  161 (194)
T 1kam_A           84 REGPSYTFDTVSLLKQRY-PNDQLFFIIGADMIEYLPKWYK-LDELLNLIQFIGVKRPGFHVETPYPLLFADVPEFEVSS  161 (194)
T ss_dssp             TTCCCSHHHHHHHHHHHS-TTSEEEEEEETTTTTTCCCCHH-HHHHHHHSEEEEEECSSCCCCCSSCCEEEECCCBCCCH
T ss_pred             CCCCCChHHHHHHHHHHC-CCCcEEEEEecchhhhhccccC-HHHHHHhCcEEEEECCCcchhcCCCEEEeCCCCCCcCH
Confidence                 5566776665555 55   99999997655 34443 3433333444433331                 25999


Q ss_pred             HHHHHHHHhc
Q 014487          194 TDIVGRILSS  203 (423)
Q Consensus       194 T~Ir~rI~~~  203 (423)
                      |.||+++..+
T Consensus       162 T~IR~~i~~g  171 (194)
T 1kam_A          162 TMIRERFKSK  171 (194)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcC
Confidence            9999999876

>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*

Probab=99.64  E-value=4.1e-16  Score=142.18  Aligned_cols=130  Identities=18%  Similarity=0.265  Sum_probs=98.0

Q ss_pred             CCCCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh-hcccCeeEEcCCC
Q 014487          253 GPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPW  331 (423)
Q Consensus       253 ~~~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~-~~~Vd~Vvi~~p~  331 (423)
                      ..++++++++|+|||+|.||++++++|++++|+|+|++..+.    .|   +|+++.+||+.+++. ++..+.|.+.+..
T Consensus        18 ~~~mki~i~~GsFDPiH~GHl~ii~~A~~~~D~Viv~v~~np----~K---~~~~s~eeR~~mv~~a~~~~~~v~V~~~e   90 (177)
T 3nbk_A           18 GSHMTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNP----AK---TGMFDLDERIAMVKESTTHLPNLRVQVGH   90 (177)
T ss_dssp             --CCCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCT----TS---CCSSCHHHHHHHHHHHCTTCTTEEEEECC
T ss_pred             CCCCEEEEEEEeeCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC---CCCCCHHHHHHHHHHHhCCCCCEEEEecC
Confidence            456789999999999999999999999999999999999774    34   489999999998875 7889999887777


Q ss_pred             CchHHHHhhcCccEEEecCCcCCCCCCCCCCChHHH-----HH--hCCeEEEeC-CC--CCCCHHHHHHHHHhch
Q 014487          332 EVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEV-----AK--SMGIFQLLE-SP--KSITTTSVAQRIIANH  396 (423)
Q Consensus       332 ~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~-----~k--~~G~~~~i~-~~--~~~Stt~Ii~RI~~~~  396 (423)
                      +.+.+++++++++++++|-+... ++      .|+.     .+  ..-..+++. .+  ..+|||.|.+++....
T Consensus        91 ~l~vd~~~~~~a~~ivrGlr~~~-Df------eye~~~a~~nr~l~~ietvfl~~~~~~~~ISST~IRe~~~~gg  158 (177)
T 3nbk_A           91 GLVVDFVRSCGMTAIVKGLRTGT-DF------EYELQMAQMNKHIAGVDTFFVATAPRYSFVSSSLAKEVAMLGG  158 (177)
T ss_dssp             SCHHHHHHHTTCCEEEEEECTTC-CH------HHHHHHHHHHHHHHCCEEEEEECCGGGSSCCHHHHHHHHHTTC
T ss_pred             chHHHHHHHcCCCEEEECCCchh-HH------HHHHHHHHHHHhcCCCceEEEeCCCcccccchHHHHHHHHcCC
Confidence            78899999999999999933211 11      1211     11  222233442 22  4799999998876544

>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*

Probab=99.63  E-value=4.2e-16  Score=141.63  Aligned_cols=132  Identities=12%  Similarity=0.271  Sum_probs=93.4

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHH-hhcccCeeEE-cCCCCc
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVII-GAPWEV  333 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~Vd~Vvi-~~p~~~  333 (423)
                      +++++++|+|||+|.||+.++++|++++|+|+|++..+.    .|   +|+++.+||+.+++ +++.++.|.+ .+..+.
T Consensus         2 m~i~i~~GsFDPiH~GHl~i~~~a~~~~D~viv~v~~~~----~K---~~~~~~~~R~~ml~~a~~~~~~v~v~~~~e~~   74 (171)
T 3nd5_A            2 RKIALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFINT----SK---QTLFTPEEKKYLIEEATKEMPNVRVIMQETQL   74 (171)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEEC-------------CCCHHHHHHHHHHHHTTCTTEEEEEECSSC
T ss_pred             CeEEEEEEEccccCHHHHHHHHHHHHHCCCeEEEEecCC----CC---CCCCCHHHHHHHHHHHHccCCCEEEeeCCCCc
Confidence            478999999999999999999999999999999998763    34   48999999999997 5799999887 555567


Q ss_pred             hHHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHh----CCeEEEeCCC--CCCCHHHHHHHHHhch
Q 014487          334 TKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKS----MGIFQLLESP--KSITTTSVAQRIIANH  396 (423)
Q Consensus       334 ~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~----~G~~~~i~~~--~~~Stt~Ii~RI~~~~  396 (423)
                      +.+++++++++++++|-+... ++. .+.......+.    .+.+..++.+  ..+|||.|.+++..+.
T Consensus        75 tvd~~~~l~~~~~i~G~~~~~-d~~-~e~~la~~nr~l~~~~etv~l~~~~~~~~ISST~IRe~~~~g~  141 (171)
T 3nd5_A           75 TVESAKSLGANFLIRGIRNVK-DYE-YEKDIAKMNQHLAPEIETVFLLAEEPYAHVSSSLLKEVLRFGG  141 (171)
T ss_dssp             HHHHHHHHTCCEEEEEECSHH-HHH-HHHHHHHHHHHHCTTSEEEEEECCGGGTTCCHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCCEEEECCCchh-hhH-HHHHHHHHhhhhcCCccEEEEeCCccccccchHHHHHHHHcCC
Confidence            899999999999999943211 110 00000001111    2233333333  4799999999987644

>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3

Probab=99.62  E-value=1.5e-15  Score=138.09  Aligned_cols=127  Identities=20%  Similarity=0.227  Sum_probs=94.7

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHH-hhcccCeeEEcCCCCch
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPWEVT  334 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~Vd~Vvi~~p~~~~  334 (423)
                      .-+++++|+|||+|.||+.++++|++++|+|+|+++++.    .|   +|+++.+||+++++ +++.++.|.+.+..+.+
T Consensus        12 ~~i~i~~GsFdP~H~GHl~l~~~A~~~~D~viv~v~~~~----~k---k~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t   84 (173)
T 1vlh_A           12 HMKAVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENP----RK---KCMFTLEERKKLIEEVLSDLDGVKVDVHHGLL   84 (173)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEECCT----TC---CCSSCHHHHHHHHHHHTTTCTTEEEEEECSCH
T ss_pred             ceEEEEEEEECcCcHHHHHHHHHHHHHCCEEEEEEeCCC----CC---CCCCCHHHHHHHHHHHhcCCCCEEEecCcchH
Confidence            357999999999999999999999999999999999973    23   48999999999998 79999998886544578


Q ss_pred             HHHHhhcCccEEEecC----CcCCCCCCCCCCChHHH-HHhC---CeEEEeCCC---CCCCHHHHHHHHHhch
Q 014487          335 KDMITTFNICLVVHGT----VSETNTPLTGQSDPYEV-AKSM---GIFQLLESP---KSITTTSVAQRIIANH  396 (423)
Q Consensus       335 ~~~i~~~~~d~vv~G~----d~~~~~~~~~~~d~~~~-~k~~---G~~~~i~~~---~~~Stt~Ii~RI~~~~  396 (423)
                      .++++.++++++++|-    +|+..       ....+ .+.+   ...+++...   ..+|+|.|.+++..+.
T Consensus        85 vd~l~~l~~~~~i~gl~~w~d~~~~-------~~~~~~~r~~~~~~~~i~l~~~~~~~~iSST~IR~~i~~g~  150 (173)
T 1vlh_A           85 VDYLKKHGIKVLVRGLRAVTDYEYE-------LQMALANKKLYSDLETVFLIASEKFSFISSSLVKEVALYGG  150 (173)
T ss_dssp             HHHHHHHTCCEEEEEECTTSCHHHH-------HHHHHHHHHHSTTCEEEEEECCGGGTTCCHHHHHHHHHTTC
T ss_pred             HHHHHHhCCCeEEeCCCcccchhhc-------cchhhcCCCCCCCCcEEEEeCCCCCCceeHHHHHHHHHcCC
Confidence            8999999999999983    22110       01111 1211   122333222   3699999999987644

>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3

Probab=99.62  E-value=2e-15  Score=134.45  Aligned_cols=122  Identities=23%  Similarity=0.285  Sum_probs=85.5

Q ss_pred             EEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCC-CCCCcHHHHHHHHhc-CccccEEEecCCccccHHHH
Q 014487           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDEVIANAPYAITEQFM  145 (423)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~-~~~VD~vi~~~p~~~~~efl  145 (423)
                      ++++|+|||+|.||+.++++|++.++.++++++.++    .|+ +++++.++|++|++. +.++|.+.. .+|+   +|.
T Consensus         3 ~v~~GsFdp~H~GH~~l~~~a~~~~d~v~v~~~~~p----~k~~~~~~~~~~R~~ml~~a~~~~~~v~v-~~~e---~~~   74 (160)
T 1od6_A            3 VVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENP----SKRGQYLFSAEERLAIIREATAHLANVEA-ATFS---GLL   74 (160)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECC---------CCSSCHHHHHHHHHHHTTTCTTEEE-EEEC---SCH
T ss_pred             EEEEeeeCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CCCCCCCCCHHHHHHHHHHHhcCCCCEEE-EecC---chH
Confidence            899999999999999999999999999999888654    243 478999999999985 567786655 2343   134


Q ss_pred             HHHHhhcCccEEEEcCCCCCCCCCCcHHHHHH-------hCC---c-EEEecc--CCCCCHHHHHHHHHhc
Q 014487          146 NRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK-------KVG---R-YKQIKR--TEGVSSTDIVGRILSS  203 (423)
Q Consensus       146 ~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk-------~~g---~-~~~v~r--~~~iSST~Ir~rI~~~  203 (423)
                      .+++++++++++++|.|-     +.+ ++.+.       ..+   . +..+..  ...||||.||+++.++
T Consensus        75 ~~~l~~l~~~~~v~G~d~-----~~~-~~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~l~~G  139 (160)
T 1od6_A           75 VDFVRRVGAQAIVKGLRA-----VSD-YEYELQMAHLNRQLYPGLETLFILAATRYSFVSSTMVKEIARYG  139 (160)
T ss_dssp             HHHHHHTTCSEEEEEECT-----TSC-HHHHHHHHHHHHHHTTTCEEEEEECCGGGTTCCHHHHHHHHHTT
T ss_pred             HHHHHHcCCCEEEEeCCc-----ccc-hHHHHHHHHhCcCCCCCCCEEEEeCCCCCCcccHHHHHHHHHcC
Confidence            345567899999999872     111 22221       111   2 222322  2369999999999876

>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0

Probab=99.60  E-value=2.3e-15  Score=136.33  Aligned_cols=132  Identities=14%  Similarity=0.174  Sum_probs=95.0

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh-hcccCeeEEcCCCCch
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVT  334 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~-~~~Vd~Vvi~~p~~~~  334 (423)
                      +++++++|+|||+|.||+.++++|++++|+|+|+++.+.    .|   +|+++.+||+.+++. ++.++.|.+.+..+.+
T Consensus         3 ~ki~i~~GsFDPiH~GHl~i~~~a~~~~d~viv~v~~~p----~K---~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t   75 (168)
T 3f3m_A            3 HTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNS----KK---EGTFSLEERMDLIEQSVKHLPNVKVHQFSGLL   75 (168)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHGGGSSEEEEEECC------------CCSCHHHHHHHHHHHTTTCTTEEEEECCSCH
T ss_pred             ceEEEEEEEcCcCCHHHHHHHHHHHHhCCEEEEEEcCCC----CC---CCCCCHHHHHHhHHHHhcCCCCEEEEEcCCCH
Confidence            579999999999999999999999999999999999764    34   589999999999875 6888988776666778


Q ss_pred             HHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHh----CCeEEEeCCC--CCCCHHHHHHHHHhch
Q 014487          335 KDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKS----MGIFQLLESP--KSITTTSVAQRIIANH  396 (423)
Q Consensus       335 ~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~----~G~~~~i~~~--~~~Stt~Ii~RI~~~~  396 (423)
                      .+++++++++++++|.|...+ +..+ .......+.    ...+..++.+  ..+|||.|.+++....
T Consensus        76 vd~~~~l~~~~~I~G~d~~~d-~~~e-~~~a~~~r~l~~~~e~v~l~~~p~~~~ISST~IRe~~~~g~  141 (168)
T 3f3m_A           76 VDYCEQVGAKTIIRGLRAVSD-FEYE-LRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRA  141 (168)
T ss_dssp             HHHHHHHTCCEEEEEECTTCC-HHHH-HHHHHHHHHHCTTSEEEEEECCTTTTTCCHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCEEEEcCCchhh-hhHH-HHHhHHhHhhCCCCcEEEEeCCcccccccHHHHHHHHHcCC
Confidence            999999999999999653221 1000 000001111    1223333333  2499999999987665

>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0

Probab=99.60  E-value=1.5e-15  Score=137.68  Aligned_cols=129  Identities=19%  Similarity=0.243  Sum_probs=84.6

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhc-CccccEEEecCCc-cccH
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPY-AITE  142 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~vi~~~p~-~~~~  142 (423)
                      +++++++|+|||+|.||+.++++|++++|+++|++..++    .| +++++.++|++|++. ++..+.+.. .+| .++.
T Consensus         3 ~ki~i~~GsFDPiH~GHl~i~~~a~~~~d~viv~v~~~p----~K-~~~~~~~~R~~ml~~a~~~~~~v~v-~~~e~~tv   76 (168)
T 3f3m_A            3 HTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNS----KK-EGTFSLEERMDLIEQSVKHLPNVKV-HQFSGLLV   76 (168)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHGGGSSEEEEEECC----------CCSCHHHHHHHHHHHTTTCTTEEE-EECCSCHH
T ss_pred             ceEEEEEEEcCcCCHHHHHHHHHHHHhCCEEEEEEcCCC----CC-CCCCCHHHHHHhHHHHhcCCCCEEE-EEcCCCHH
Confidence            468999999999999999999999999999999999764    34 589999999999985 455665543 122 2455


Q ss_pred             HHHHHHHhhcCccEEEEcCCCCCCCCCC-cHHHHHHhC---CcEEEeccCC---CCCHHHHHHHHHhc
Q 014487          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGT-DAYALAKKV---GRYKQIKRTE---GVSSTDIVGRILSS  203 (423)
Q Consensus       143 efl~~ll~~~~~d~VV~G~D~~~g~~g~-~~~~~lk~~---g~~~~v~r~~---~iSST~Ir~rI~~~  203 (423)
                      +++    +++++++++.|-|--.+...+ .....-+..   .+.+.+..++   .||||.||+++..+
T Consensus        77 d~~----~~l~~~~~I~G~d~~~d~~~e~~~a~~~r~l~~~~e~v~l~~~p~~~~ISST~IRe~~~~g  140 (168)
T 3f3m_A           77 DYC----EQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYR  140 (168)
T ss_dssp             HHH----HHHTCCEEEEEECTTCCHHHHHHHHHHHHHHCTTSEEEEEECCTTTTTCCHHHHHHHHHTT
T ss_pred             HHH----HHcCCCEEEEcCCchhhhhHHHHHhHHhHhhCCCCcEEEEeCCcccccccHHHHHHHHHcC
Confidence            665    456899999994421110101 000001111   1222222222   39999999999865

>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*

Probab=99.58  E-value=2.5e-15  Score=140.60  Aligned_cols=91  Identities=19%  Similarity=0.230  Sum_probs=75.5

Q ss_pred             EEEecccCcCcHHHHHHHHHHHHhc--CeeEEEEecchhhhccCCCCCCcHHHHHHHHh-cCccccEEEecCCc------
Q 014487           68 VYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVS-GLKWVDEVIANAPY------  138 (423)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~-~~~~VD~vi~~~p~------  138 (423)
                      ++++|+|||+|.||+.++++|++.+  +.+++.+++++.   .|..++++.++|++|++ ++++++.+.. .+|      
T Consensus         6 ~i~~GsFdPiH~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~R~~ml~~a~~~~~~v~v-~~~e~~~~~   81 (213)
T 1k4m_A            6 ALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP---HRPQPEANSVQRKHMLELAIADKPLFTL-DERELKRNA   81 (213)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCT---TSCCCSSCHHHHHHHHHHHHTTCTTEEE-CCHHHHCSS
T ss_pred             EEEEeCcCCCCHHHHHHHHHHHHHcCCCEEEEEECCCCC---CCCCCCCCHHHHHHHHHHHhccCCCEEE-eHHHhcCCC
Confidence            8999999999999999999999998  889998887753   34346899999999998 5677887766 334      


Q ss_pred             -cccHHHHHHHHhhcCcc---EEEEcCC
Q 014487          139 -AITEQFMNRLFNEHKID---YIIHGDD  162 (423)
Q Consensus       139 -~~~~efl~~ll~~~~~d---~VV~G~D  162 (423)
                       .++.+|++.+.++++++   ++++|.|
T Consensus        82 ~s~t~~~l~~l~~~~~~~~~~~~i~G~D  109 (213)
T 1k4m_A           82 PSYTAQTLKEWRQEQGPDVPLAFIIGQD  109 (213)
T ss_dssp             CCCHHHHHHHHHHHHCTTSCEEEEEEHH
T ss_pred             CCcHHHHHHHHHHHhCCCCcEEEEEehh
Confidence             35678998877777899   9999997

>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*

Probab=99.58  E-value=3.8e-15  Score=135.79  Aligned_cols=132  Identities=17%  Similarity=0.173  Sum_probs=90.8

Q ss_pred             CCCCeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhc-CccccEEEecCCccc
Q 014487           62 KKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYAI  140 (423)
Q Consensus        62 ~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~vi~~~p~~~  140 (423)
                      +.+++++++.|+|||+|.||+.++++|++++|+|+|++..++    .| +++++.+||++|++. ++..+.+....--.+
T Consensus        18 ~~~mki~i~~GsFDPiH~GHl~ii~~A~~~~D~Viv~v~~np----~K-~~~~s~eeR~~mv~~a~~~~~~v~V~~~e~l   92 (177)
T 3nbk_A           18 GSHMTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNP----AK-TGMFDLDERIAMVKESTTHLPNLRVQVGHGL   92 (177)
T ss_dssp             --CCCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCT----TS-CCSSCHHHHHHHHHHHCTTCTTEEEEECCSC
T ss_pred             CCCCEEEEEEEeeCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHhCCCCCEEEEecCch
Confidence            345789999999999999999999999999999999999764    34 589999999999985 556666554221234


Q ss_pred             cHHHHHHHHhhcCccEEEEc----CCCCCCCCCCcHHHHHHhCCcEEEecc---CCCCCHHHHHHHHHhc
Q 014487          141 TEQFMNRLFNEHKIDYIIHG----DDPCLLPDGTDAYALAKKVGRYKQIKR---TEGVSSTDIVGRILSS  203 (423)
Q Consensus       141 ~~efl~~ll~~~~~d~VV~G----~D~~~g~~g~~~~~~lk~~g~~~~v~r---~~~iSST~Ir~rI~~~  203 (423)
                      +.+|+    +++++++++.|    .||..-.+-......+ ...+.+.+..   ...||||.||+++..+
T Consensus        93 ~vd~~----~~~~a~~ivrGlr~~~Dfeye~~~a~~nr~l-~~ietvfl~~~~~~~~ISST~IRe~~~~g  157 (177)
T 3nbk_A           93 VVDFV----RSCGMTAIVKGLRTGTDFEYELQMAQMNKHI-AGVDTFFVATAPRYSFVSSSLAKEVAMLG  157 (177)
T ss_dssp             HHHHH----HHTTCCEEEEEECTTCCHHHHHHHHHHHHHH-HCCEEEEEECCGGGSSCCHHHHHHHHHTT
T ss_pred             HHHHH----HHcCCCEEEECCCchhHHHHHHHHHHHHHhc-CCCceEEEeCCCcccccchHHHHHHHHcC
Confidence            56666    46899999999    4442100000000112 3334333332   3469999999998754

>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*

Probab=99.57  E-value=1.6e-15  Score=137.75  Aligned_cols=128  Identities=20%  Similarity=0.205  Sum_probs=84.2

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhc-CccccEEEe-cCCccccH
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIA-NAPYAITE  142 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~vi~-~~p~~~~~  142 (423)
                      +++++++|+|||+|.||+.++++|++++|+|+|++..++    .| +|+++.++|++|++. ++.++.+.. ..--.++.
T Consensus         2 m~i~i~~GsFDPiH~GHl~i~~~a~~~~D~viv~v~~~~----~K-~~~~~~~~R~~ml~~a~~~~~~v~v~~~~e~~tv   76 (171)
T 3nd5_A            2 RKIALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFINT----SK-QTLFTPEEKKYLIEEATKEMPNVRVIMQETQLTV   76 (171)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEEC-----------CCCHHHHHHHHHHHHTTCTTEEEEEECSSCHH
T ss_pred             CeEEEEEEEccccCHHHHHHHHHHHHHCCCeEEEEecCC----CC-CCCCCHHHHHHHHHHHHccCCCEEEeeCCCCcHH
Confidence            368999999999999999999999999999999997654    34 489999999999984 567776644 21113456


Q ss_pred             HHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHH--H-Hh---CCcEEEec---cCCCCCHHHHHHHHHhc
Q 014487          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYAL--A-KK---VGRYKQIK---RTEGVSSTDIVGRILSS  203 (423)
Q Consensus       143 efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~--l-k~---~g~~~~v~---r~~~iSST~Ir~rI~~~  203 (423)
                      ++++    ++++++++.|-|--.  +.....+.  + +.   ..+.+.+.   ....||||.||+++..+
T Consensus        77 d~~~----~l~~~~~i~G~~~~~--d~~~e~~la~~nr~l~~~~etv~l~~~~~~~~ISST~IRe~~~~g  140 (171)
T 3nd5_A           77 ESAK----SLGANFLIRGIRNVK--DYEYEKDIAKMNQHLAPEIETVFLLAEEPYAHVSSSLLKEVLRFG  140 (171)
T ss_dssp             HHHH----HHTCCEEEEEECSHH--HHHHHHHHHHHHHHHCTTSEEEEEECCGGGTTCCHHHHHHHHHTT
T ss_pred             HHHH----HCCCCEEEECCCchh--hhHHHHHHHHHhhhhcCCccEEEEeCCccccccchHHHHHHHHcC
Confidence            6664    568999999944100  00000000  0 11   12222222   23379999999999865

>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A

Probab=99.53  E-value=6.7e-14  Score=124.20  Aligned_cols=131  Identities=15%  Similarity=0.237  Sum_probs=96.1

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh-hcccCeeEEcCCCCch
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVT  334 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~-~~~Vd~Vvi~~p~~~~  334 (423)
                      ++++++.|+|||+|.||+.++++|++.+|.++|+++.|.    .|   +++++.+||+.+++. +..+|.+.+.+....+
T Consensus         1 ~~i~i~~GsFDpvH~GH~~l~~~a~~~~d~v~v~~~~~p----~k---~~~~~~~~R~~ml~~a~~~~~~v~v~~~~~~~   73 (158)
T 1qjc_A            1 QKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASP----SK---KPMFTLEERVALAQQATAHLGNVEVVGFSDLM   73 (158)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEESCC----SS---CCSSCHHHHHHHHHHHTTTCTTEEEEEECSCH
T ss_pred             CCEEEEEecCCCCCHHHHHHHHHHHHhCCEEEEEECCCC----CC---CCCCCHHHHHHHHHHHHhcCCCeEEcccchHH
Confidence            478999999999999999999999999999999999874    34   378999999999984 8999988875544567


Q ss_pred             HHHHhhcCccEEEecCCcCCCCCCCCCCChHH-HHHhC----CeEEEeCCC--CCCCHHHHHHHHHhch
Q 014487          335 KDMITTFNICLVVHGTVSETNTPLTGQSDPYE-VAKSM----GIFQLLESP--KSITTTSVAQRIIANH  396 (423)
Q Consensus       335 ~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~-~~k~~----G~~~~i~~~--~~~Stt~Ii~RI~~~~  396 (423)
                      .++++++++++++.|.|...+ +  ....... ..+..    ..+..++..  ..+|||.|.++|....
T Consensus        74 ~~~l~~l~~~~~v~G~d~~~~-~--~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g~  139 (158)
T 1qjc_A           74 ANFARNQHATVLIRGLRAVAD-F--EYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQG  139 (158)
T ss_dssp             HHHHHHTTCCEEEEECCTTCC-H--HHHHHHHHHHHHHCTTSEEEEECCCGGGTTCCHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCEEEEeccchhh-h--HHHHHHHHhCccCCCCCCEEEEECCCCCCccCHHHHHHHHHcCC
Confidence            789999999999999764322 1  0000000 11221    133334433  3699999999997653

>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*

Probab=99.53  E-value=2.3e-14  Score=136.98  Aligned_cols=94  Identities=23%  Similarity=0.320  Sum_probs=76.8

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhc--CeeEEEEecchhhhccCCCCCCcHHHHHHHHh-cCccccEEEecCCc---
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVS-GLKWVDEVIANAPY---  138 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~-~~~~VD~vi~~~p~---  138 (423)
                      +++++++|+|||+|.||+.++++|++.+  |.++|+++.++.   .|+.++++.++|++|++ ++.+++.+.+ .+|   
T Consensus        23 ~~i~i~~GsFdPiH~GHl~li~~a~~~~~ld~v~v~~~~~~p---~K~~~~~~~~~R~~ml~~a~~~~~~v~v-~~~e~~   98 (242)
T 1yum_A           23 KRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPP---HRETPQVSAAQRLAMVERAVAGVERLTV-DPRELQ   98 (242)
T ss_dssp             CEEEEEEECCTTCCHHHHHHHHHHHHHHTCSEEEEEECCCCG---GGSCTTCCHHHHHHHHHHHHTTCTTEEE-CCGGGG
T ss_pred             ceEEEEEeeCcHhhHHHHHHHHHHHHHcCCCEEEEEEcCCCC---CCCCCCCCHHHHHHHHHHHhcCCCeEEE-eeeeec
Confidence            4678999999999999999999999998  999999998862   34457899999999999 4667787766 334   


Q ss_pred             ----cccHHHHHHHHhhcCcc---EEEEcCC
Q 014487          139 ----AITEQFMNRLFNEHKID---YIIHGDD  162 (423)
Q Consensus       139 ----~~~~efl~~ll~~~~~d---~VV~G~D  162 (423)
                          .++.++++.+-.+++|+   ++++|.|
T Consensus        99 ~~~~sytvdtl~~l~~~~~p~~~~~fI~G~D  129 (242)
T 1yum_A           99 RDKPSYTIDTLESVRAELAADDQLFMLIGWD  129 (242)
T ss_dssp             SSSSCCHHHHHHHHHHHSCTTCEEEEEEEHH
T ss_pred             CCCCCCHHHHHHHHHHHhCCCCcEEEEEehh
Confidence                46778888766667677   8999986

>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3

Probab=99.52  E-value=1.5e-14  Score=131.47  Aligned_cols=125  Identities=25%  Similarity=0.293  Sum_probs=87.0

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHh-cCccccEEEecCCcc-ccH
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS-GLKWVDEVIANAPYA-ITE  142 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~-~~~~VD~vi~~~p~~-~~~  142 (423)
                      ..+++++|+|||+|.||+.++++|++++|+|+|++.+++    .| +++++.++|++|++ +++.++.+.. .+++ ++.
T Consensus        12 ~~i~i~~GsFdP~H~GHl~l~~~A~~~~D~viv~v~~~~----~k-k~~~~~~~R~~ml~~a~~~~~~v~v-~~~e~~tv   85 (173)
T 1vlh_A           12 HMKAVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENP----RK-KCMFTLEERKKLIEEVLSDLDGVKV-DVHHGLLV   85 (173)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEECCT----TC-CCSSCHHHHHHHHHHHTTTCTTEEE-EEECSCHH
T ss_pred             ceEEEEEEEECcCcHHHHHHHHHHHHHCCEEEEEEeCCC----CC-CCCCCHHHHHHHHHHHhcCCCCEEE-ecCcchHH
Confidence            347999999999999999999999999999999999974    23 48899999999999 6877776654 2232 455


Q ss_pred             HHHHHHHhhcCccEEEEc----CCCCCCCCCCcHHHHHH-hC---CcEEEecc---CCCCCHHHHHHHHHhc
Q 014487          143 QFMNRLFNEHKIDYIIHG----DDPCLLPDGTDAYALAK-KV---GRYKQIKR---TEGVSSTDIVGRILSS  203 (423)
Q Consensus       143 efl~~ll~~~~~d~VV~G----~D~~~g~~g~~~~~~lk-~~---g~~~~v~r---~~~iSST~Ir~rI~~~  203 (423)
                      +++    +++++++++.|    .||...    -...... ..   .+.+.+..   ...+|||.||+++..+
T Consensus        86 d~l----~~l~~~~~i~gl~~w~d~~~~----~~~~~~~r~~~~~~~~i~l~~~~~~~~iSST~IR~~i~~g  149 (173)
T 1vlh_A           86 DYL----KKHGIKVLVRGLRAVTDYEYE----LQMALANKKLYSDLETVFLIASEKFSFISSSLVKEVALYG  149 (173)
T ss_dssp             HHH----HHHTCCEEEEEECTTSCHHHH----HHHHHHHHHHSTTCEEEEEECCGGGTTCCHHHHHHHHHTT
T ss_pred             HHH----HHhCCCeEEeCCCcccchhhc----cchhhcCCCCCCCCcEEEEeCCCCCCceeHHHHHHHHHcC
Confidence            655    45688999988    332110    0000111 11   12222222   2369999999999865

>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*

Probab=99.48  E-value=6.9e-14  Score=128.35  Aligned_cols=133  Identities=18%  Similarity=0.146  Sum_probs=93.3

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhc--CeeEEEEecchhhhccCC-CCCCcHHHHHHHHhc-CccccEEEec------
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDEVIAN------  135 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~-~~~VD~vi~~------  135 (423)
                      ++++++|+|||+|.||+.++++|++.+  +.+++.++++..   .|+ .++++.++|++|++. ++..+.+...      
T Consensus         3 ~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~~R~~m~~~a~~~~~~v~v~~~e~~~   79 (189)
T 2h29_A            3 KIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSP---LKKHHDFIDVQHRLTMIQMIIDELGFGDICDDEIKR   79 (189)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECSBCT---TSCCCSSCCCHHHHHHHHHHHHHHTCCEECCHHHHH
T ss_pred             eEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEECCCCC---CCcCCCCCCHHHHHHHHHHHHcCCCCEEEehHHhcC
Confidence            578999999999999999999999987  888887777653   343 578999999999984 5555544431      


Q ss_pred             CCccccHHHHHHHHhhcCcc---EEEEcCCC-CCCCCCCcHHHHHHhCCcEEEeccC-----------------CCCCHH
Q 014487          136 APYAITEQFMNRLFNEHKID---YIIHGDDP-CLLPDGTDAYALAKKVGRYKQIKRT-----------------EGVSST  194 (423)
Q Consensus       136 ~p~~~~~efl~~ll~~~~~d---~VV~G~D~-~~g~~g~~~~~~lk~~g~~~~v~r~-----------------~~iSST  194 (423)
                      ....++.++++.+.+.+ |+   ++++|.|. .....|.+. +.+-....+..+.|.                 ..||||
T Consensus        80 ~~~syt~dtl~~l~~~~-p~~~~~~i~G~D~~~~~~~W~~~-~~i~~~~~~~v~~R~~~~~~~~~~i~~~~~~~~~ISST  157 (189)
T 2h29_A           80 GGQSYTYDTIKAFKEQH-KDSELYFVIGTDQYNQLEKWYQI-EYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISST  157 (189)
T ss_dssp             CSBCCHHHHHHHHHHHS-TTEEEEEEEEHHHHTTGGGSTTH-HHHHHHCEEEEECCSSSCCCCCTTSEEECCCCBCCCHH
T ss_pred             CCCCCHHHHHHHHHHHC-CCCcEEEEEecchhhhhccccCH-HHHHhhCcEEEEECCCCccccCCcEEEEcCCCCccCHH
Confidence            12335677887765555 66   89999883 222334443 333333455555442                 259999


Q ss_pred             HHHHHHHhc
Q 014487          195 DIVGRILSS  203 (423)
Q Consensus       195 ~Ir~rI~~~  203 (423)
                      .||+++..+
T Consensus       158 ~IR~~i~~g  166 (189)
T 2h29_A          158 MIRQRVSEG  166 (189)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            999999865

>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}

Probab=99.45  E-value=1.3e-13  Score=125.94  Aligned_cols=132  Identities=14%  Similarity=0.091  Sum_probs=92.5

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhc-Ccccc--EEEe--------
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVD--EVIA--------  134 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD--~vi~--------  134 (423)
                      ++++++|+|||+|.||+.+++ |.+..|++++++.++.   +.| +++.+.++|++|++. ++...  .+..        
T Consensus         3 ~igi~gGsFdPih~GHl~i~~-a~~~~d~v~~~p~~~~---~~k-~~~~~~~~R~~m~~~a~~~~~~~~~~v~~~E~~l~   77 (177)
T 3h05_A            3 KIAIFGSAFNPPSLGHKSVIE-SLSHFDLVLLEPSIAH---AWG-KNMLDYPIRCKLVDAFIKDMGLSNVQRSDLEQALY   77 (177)
T ss_dssp             EEEEEEECCSSCCHHHHHHHT-TCTTSSEEEEEECC-----------CCCHHHHHHHHHHHHHHHCCTTEEECCHHHHHC
T ss_pred             EEEEEEeccchhhHHHHHHHH-HHHHCCEEEEEECCCC---CCC-CCCCCHHHHHHHHHHHHhcCCCCcEEEEehhhhcc
Confidence            578999999999999999998 7777799999998752   223 578999999999985 22211  1221        


Q ss_pred             cCC-ccccHHHHHHHHhhcC-cc-EEEEcCC-CCCCCCCCcHHHHHHhCCcEEEeccCCCCCHHHHHHHHHhc
Q 014487          135 NAP-YAITEQFMNRLFNEHK-ID-YIIHGDD-PCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (423)
Q Consensus       135 ~~p-~~~~~efl~~ll~~~~-~d-~VV~G~D-~~~g~~g~~~~~~lk~~g~~~~v~r~~~iSST~Ir~rI~~~  203 (423)
                      ... ..+|.+.++.+.+++. .+ ++++|.| +...+.|.+ ++.+-+...+..+++...||||+||++|.++
T Consensus        78 ~~~~~syT~dTl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~-~~~l~~~~~~vv~~r~~~iSST~IR~~i~~g  149 (177)
T 3h05_A           78 QPGQSVTTYALLEKIQEIYPTADITFVIGPDNFFKFAKFYK-AEEITERWTVMACPEKVKIRSTDIRNALIEG  149 (177)
T ss_dssp             ----CCCHHHHHHHHHHHSTTSEEEEEECHHHHHTGGGSTT-HHHHHHHSEEEECCCSSCCCHHHHHHHHHHT
T ss_pred             cCCCCcchHHHHHHHHHHhcCCCeEEEEecchhhhcccchh-HHHHHHhCCEEEEcCCCCCcHHHHHHHHHcC
Confidence            012 4467778877766652 23 6889988 433455665 4455555688889998899999999999876

>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3

Probab=99.44  E-value=4.4e-13  Score=120.65  Aligned_cols=131  Identities=14%  Similarity=0.241  Sum_probs=94.8

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh-hcccCeeEEcCCCCch
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVT  334 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~-~~~Vd~Vvi~~p~~~~  334 (423)
                      ++++++.|+||++|.||+.++++|++.+|.++|.+..+.    .|   .++++.+||+.+++. ++.+|.+.+.+....+
T Consensus         2 ~~i~i~~GsFDpvH~GH~~li~~a~~~~d~v~v~~~~~p----~k---~~l~~~~~R~~ml~~a~~~~~~v~v~~~e~~~   74 (169)
T 1o6b_A            2 ASIAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNS----SK---KPLFSVEERCELLREVTKDIPNITVETSQGLL   74 (169)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCC----SS---CCSSCHHHHHHHHHHHHTTCTTEEEEECSSCH
T ss_pred             CcEEEEEEeeCCCCHHHHHHHHHHHHhCCEEEEEECCCC----cc---CCCCCHHHHHHHHHHHHhcCCCEEEcccchHH
Confidence            478999999999999999999999999999999888552    24   478999999999985 6889988875544567


Q ss_pred             HHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhC--C-e-EEEeCCC--CCCCHHHHHHHHHhc
Q 014487          335 KDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSM--G-I-FQLLESP--KSITTTSVAQRIIAN  395 (423)
Q Consensus       335 ~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~--G-~-~~~i~~~--~~~Stt~Ii~RI~~~  395 (423)
                      .+.++.+++++++.|.|...+ +. ...+.....+..  | . ...++..  ..+|||.|.+++...
T Consensus        75 ~~~l~~l~~~~~i~G~d~~~~-~~-~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~l~~G  139 (169)
T 1o6b_A           75 IDYARRKNAKAILRGLRAVSD-FE-YEMQGTSVNRVLDESIETFFMMANNQYSFLSSSIVKEVARYD  139 (169)
T ss_dssp             HHHHHHTTCSEEEEEECSGGG-HH-HHHHHHHHHHHHCTTSEEEEEECCSTTTTCCHHHHHHHHHTT
T ss_pred             HHHHHHcCCCEEEEcCccccc-hH-HHHHHHHHhccccCCCCEEEEECCCCCCcCcHHHHHHHHHcC
Confidence            788999999999999875332 10 000000111211  3 2 2223332  369999999998765

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.43  E-value=2.8e-13  Score=133.93  Aligned_cols=130  Identities=15%  Similarity=0.123  Sum_probs=88.8

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccE----E--EecCCc
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE----V--IANAPY  138 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~----v--i~~~p~  138 (423)
                      +++++++|+|||+|.||+.++++|++.++.++|++.+++.  +.+....++.++|++|++.. ..|.    +  +.....
T Consensus         7 ~~~~i~~G~FdP~H~GH~~li~~a~~~~d~v~v~v~~~~~--p~~~~~~~~~~~R~~m~~~~-~~~~~~~~~~~i~~~d~   83 (341)
T 2qjo_A            7 YQYGIYIGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRV--AADTRNPWRSPERMAMIEAC-LSPQILKRVHFLTVRDW   83 (341)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHEEEEEEEEEEETC--CCCSSSCSCHHHHHHHHHTT-SCHHHHTTEEEEEEECC
T ss_pred             eeEEEEEEEeCCCCHHHHHHHHHHHHhCCeEEEEECCccc--CCCCCCCCCHHHHHHHHHHH-hhhccCCeEEEEECCCC
Confidence            5789999999999999999999999999999888887753  22334458999999999974 3332    2  222111


Q ss_pred             --ccc--HHHHHHHHhhcC---ccEEEEcCCCCCCCCCCcHHHHHHhC--CcEEEeccCCCCCHHHHHHHHHhc
Q 014487          139 --AIT--EQFMNRLFNEHK---IDYIIHGDDPCLLPDGTDAYALAKKV--GRYKQIKRTEGVSSTDIVGRILSS  203 (423)
Q Consensus       139 --~~~--~efl~~ll~~~~---~d~VV~G~D~~~g~~g~~~~~~lk~~--g~~~~v~r~~~iSST~Ir~rI~~~  203 (423)
                        ...  .+|++++++.+.   ++++++|.++...      ....+..  -.+..++....||||.||++|.++
T Consensus        84 ~~~~~~w~~~~~~l~~~l~r~~~~~~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~iSST~IR~~l~~g  151 (341)
T 2qjo_A           84 LYSDNLWLAAVQQQVLKITGGSNSVVVLGHRKDAS------SYYLNLFPQWDYLETGHYPDFSSTAIRGAYFEG  151 (341)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCSCEEEEECCCSGG------GGGGGSCTTSEEEECCCCTTCCHHHHHHHHHHT
T ss_pred             cCChHHHHHHHHHHhHHhcCCCceEEEEcCCCCCC------hHHHHhccccceeecccCCCCCcHHHHHHHHcC
Confidence              111  366655555543   7899999887321      1111222  234555545679999999999866

>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3

Probab=99.42  E-value=1.7e-12  Score=115.48  Aligned_cols=129  Identities=15%  Similarity=0.216  Sum_probs=90.8

Q ss_pred             EEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHH-hhcccCeeEEcCCCCchHHH
Q 014487          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPWEVTKDM  337 (423)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~Vd~Vvi~~p~~~~~~~  337 (423)
                      +++.|+||++|.||+.++++|++.+|.++|.++.+.    .|.. .++++.++|+.+++ ++..+|.+.+.+....+.++
T Consensus         3 ~v~~GsFdp~H~GH~~l~~~a~~~~d~v~v~~~~~p----~k~~-~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~~~~   77 (160)
T 1od6_A            3 VVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENP----SKRG-QYLFSAEERLAIIREATAHLANVEAATFSGLLVDF   77 (160)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECC----------CCSSCHHHHHHHHHHHTTTCTTEEEEEECSCHHHH
T ss_pred             EEEEeeeCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CCCC-CCCCCHHHHHHHHHHHhcCCCCEEEEecCchHHHH
Confidence            889999999999999999999999999999998663    2421 37899999999997 46888987775544567789


Q ss_pred             HhhcCccEEEecCCcCCCCCCCCCCChH-HHHHhC----CeEEEeCCC--CCCCHHHHHHHHHhc
Q 014487          338 ITTFNICLVVHGTVSETNTPLTGQSDPY-EVAKSM----GIFQLLESP--KSITTTSVAQRIIAN  395 (423)
Q Consensus       338 i~~~~~d~vv~G~d~~~~~~~~~~~d~~-~~~k~~----G~~~~i~~~--~~~Stt~Ii~RI~~~  395 (423)
                      ++++++++++.|.+...+ +  ...... ...+..    ..+..++..  ..+|||.|.++|...
T Consensus        78 l~~l~~~~~v~G~d~~~~-~--~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~l~~G  139 (160)
T 1od6_A           78 VRRVGAQAIVKGLRAVSD-Y--EYELQMAHLNRQLYPGLETLFILAATRYSFVSSTMVKEIARYG  139 (160)
T ss_dssp             HHHTTCSEEEEEECTTSC-H--HHHHHHHHHHHHHTTTCEEEEEECCGGGTTCCHHHHHHHHHTT
T ss_pred             HHHcCCCEEEEeCCcccc-h--HHHHHHHHhCcCCCCCCCEEEEeCCCCCCcccHHHHHHHHHcC
Confidence            999999999999763221 1  000000 012222    123333332  479999999998764

>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*

Probab=99.42  E-value=1.1e-12  Score=119.59  Aligned_cols=126  Identities=15%  Similarity=0.134  Sum_probs=84.2

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcC-ccc----cEEEe-cCC-c
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWV----DEVIA-NAP-Y  138 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~V----D~vi~-~~p-~  138 (423)
                      ++++++|+|||+|.||+.++++|++.++.++|++.+...  +.|+.++++.++|++|++.. ...    +.+.. +.. +
T Consensus         4 ~~~i~~G~Fdp~H~GH~~l~~~a~~~~d~v~v~v~~~~~--p~~~~~~~~~~~R~~~~~~a~~~~~~~~~~v~v~~~d~~   81 (181)
T 1ej2_A            4 MRGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQL--SHSIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQDI   81 (181)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTC--CSSSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEECCCC
T ss_pred             eEEEEEEEcCCcCHHHHHHHHHHHHhCCeeEEEECCCCC--CcCCCCCCCHHHHHHHHHHHHhhCCCCCCcEEEEecCcc
Confidence            479999999999999999999999999999998844432  23345678999999999863 222    33332 111 1


Q ss_pred             ccc---HHHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhC-CcEEEeccCC--CCCHHHHHHHHHhc
Q 014487          139 AIT---EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKV-GRYKQIKRTE--GVSSTDIVGRILSS  203 (423)
Q Consensus       139 ~~~---~efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~-g~~~~v~r~~--~iSST~Ir~rI~~~  203 (423)
                      ...   .+|++++.  ..++.+++|.|+        ....++.. ..+..++...  .||||.||+++..+
T Consensus        82 ~~~~~w~~~~~~l~--~~~~~~v~gr~~--------~~~~~~~~~i~~~~~~~~~~~~ISST~IR~~l~~G  142 (181)
T 1ej2_A           82 ECNALWVGHIKMLT--PPFDRVYSGNPL--------VQRLFSEDGYEVTAPPLFYRDRYSGTEVRRRMLDD  142 (181)
T ss_dssp             SCHHHHHHHHHHHS--CCCSEEECCCHH--------HHHHHHHTTCCEECCCCSSTTTSSHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHC--CCCCEEEECCHH--------HHHHHHhCCeEEEecCCCccCcCcHHHHHHHHHcC
Confidence            111   24444332  367889999775        12233333 3455555433  49999999999866

>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}

Probab=99.36  E-value=1.8e-13  Score=121.48  Aligned_cols=125  Identities=22%  Similarity=0.337  Sum_probs=82.4

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhc-CeeEEEEecchhhhccCCCCCCcHHHHHHHHhcC--cc----ccEEEecCCcc
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGL--KW----VDEVIANAPYA  139 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~--~~----VD~vi~~~p~~  139 (423)
                      +++++|+||++|.||+.++++|.+++ |+|+|++++++.... +..++++.++|++|++..  +.    +..+-...+|.
T Consensus         2 ~~i~gGtFDPiH~GHl~l~~~a~~~~~d~viv~v~~~~~~~k-~~~~~~~~~~R~~ml~~a~~~~~~~~~~i~~i~D~~g   80 (148)
T 3do8_A            2 KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARA-RIRSVLPFAIRAENVKRYVMRKYGFEPEIVKITNPYG   80 (148)
T ss_dssp             CEEEEECCSSCCHHHHHHHHHHHHHHTTCEEEEEECHHHHHH-HSCCCSCHHHHHHHHHHHHHHHHSSCCEEEEECSTTT
T ss_pred             EEEEEeeCCCCCHHHHHHHHHHHHhCCCEEEEEECCCccccc-cCCCCCCHHHHHHHHHHHHhcccCCcEEEEeecCCCC
Confidence            58999999999999999999999997 899999999986532 236899999999999863  21    22222334443


Q ss_pred             ccHHHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCC----cEEEeccC-----CCCCHHHHHHHHHh
Q 014487          140 ITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKRT-----EGVSSTDIVGRILS  202 (423)
Q Consensus       140 ~~~efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g----~~~~v~r~-----~~iSST~Ir~rI~~  202 (423)
                      .+.        .-++|++|++.+-..+  +....+..++.|    ++..++..     ..||||.||+++.+
T Consensus        81 ~~~--------~~~~d~ivvs~Et~~~--~~~l~~~~~~~G~~~l~V~~v~~~~~~~~~~iSST~IR~~~id  142 (148)
T 3do8_A           81 KTL--------DVDFEYLVVSPETYEM--ALKINQKREELGKRKITIVKVDWMMAEDGKPISSTRIKRGEID  142 (148)
T ss_dssp             TTT--------TSCCSEEEECTTTHHH--HHHHHHHHHHHTCCCCEEEEEECCC-------CCCCCCCSCCC
T ss_pred             CCC--------CCCCCEEEEChhhccc--HHHHHHHHHHcCCCeeEEEEeccEEcCCCCEEEHHHHHHHHHh
Confidence            331        2468999999774221  111112223333    34444442     24999999988764

>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*

Probab=99.36  E-value=4.5e-12  Score=116.64  Aligned_cols=96  Identities=14%  Similarity=0.078  Sum_probs=72.0

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcC--CEEEEEEecChhhhhccCCCCCCCCHHHHHHHHH-hhcccCeeEEcCCC-
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPW-  331 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~g--d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~Vd~Vvi~~p~-  331 (423)
                      ++++++.|+||++|.||+.++++|++.+  |.++++++.+..   .|+. .++++.+||+.+++ +++.+|.+.+.+.. 
T Consensus         7 ~~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~-~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~   82 (194)
T 1kam_A            7 KKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPP---HKQN-EDYTDSFHRVEMLKLAIQSNPSFKLELVEM   82 (194)
T ss_dssp             CEEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC-------------CHHHHHHHHHHHHTTCTTEEECCGGG
T ss_pred             cEEEEEEeccccccHHHHHHHHHHHHHhCCCEEEEEECCCCC---CcCC-cCCCCHHHHHHHHHHHHcCCCCeEEeHHHh
Confidence            4789999999999999999999999998  999999987752   3432 47899999999987 58999998885421 


Q ss_pred             -----CchHHHHhhcCcc------EEEecCCcCCC
Q 014487          332 -----EVTKDMITTFNIC------LVVHGTVSETN  355 (423)
Q Consensus       332 -----~~~~~~i~~~~~d------~vv~G~d~~~~  355 (423)
                           ..+.+.++.++..      ++|.|.|+..+
T Consensus        83 ~~~~~~~t~~~l~~l~~~~p~~~~~~v~G~D~~~~  117 (194)
T 1kam_A           83 EREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEY  117 (194)
T ss_dssp             STTCCCSHHHHHHHHHHHSTTSEEEEEEETTTTTT
T ss_pred             cCCCCCChHHHHHHHHHHCCCCcEEEEEecchhhh
Confidence                 3466677766544      99999987554

>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}

Probab=99.36  E-value=3.6e-12  Score=127.96  Aligned_cols=94  Identities=21%  Similarity=0.186  Sum_probs=75.5

Q ss_pred             CCCeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchh--hhccCCCCCCcHHHHHHHHhcCccccEEEecCCccc
Q 014487           63 KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEE--IIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAI  140 (423)
Q Consensus        63 ~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~--i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~  140 (423)
                      ..++.|+++|.|||+|.||+.+|++|++ .+ ++++|.+...  +. ...+.+++.++|.+++..+ +||.|++ .||.+
T Consensus        50 ~~~~~v~~lG~FDg~H~GHq~lI~~a~~-~~-~~~~Vms~~~~~vq-rg~~~l~~~~~R~~~~~~~-GvD~vie-lpF~~  124 (357)
T 3gmi_A           50 NKDKIVCDFTEYNPLHKGHKYALEKGKE-HG-IFISVLPGPLERSG-RGIPYFLNRYIRAEMAIRA-GADIVVE-GPPMG  124 (357)
T ss_dssp             TCCCEEEEECCCTTCCHHHHHHHHHHHT-SS-EEEEEECCTTSBCT-TSSBCSSCHHHHHHHHHHH-TCSEEEE-CCCGG
T ss_pred             CCCCEEEEEEecCccCHHHHHHHHHHHH-cC-CeEEEEcCchHHhc-CCCCcCCCHHHHHHHHHHC-CCCEEEE-cCchh
Confidence            3456899999999999999999999999 55 5555555433  32 2226799999999999997 9999998 66643


Q ss_pred             c---HHHHHH---HHhhcCccEEEEcC
Q 014487          141 T---EQFMNR---LFNEHKIDYIIHGD  161 (423)
Q Consensus       141 ~---~efl~~---ll~~~~~d~VV~G~  161 (423)
                      .   ++|++.   ++.++++++||+|.
T Consensus       125 ~~s~~~Fv~~~v~ll~~l~~~~iv~G~  151 (357)
T 3gmi_A          125 IMGSGQYMRCLIKMFYSLGAEIIPRGY  151 (357)
T ss_dssp             GSCHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             hCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence            3   589886   78899999999998

>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*

Probab=99.35  E-value=1.2e-12  Score=119.44  Aligned_cols=134  Identities=14%  Similarity=0.074  Sum_probs=94.3

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcC--CEEEEEEecChhhhhccCCCCCCCCHHHHHHHHH-hhcccCeeEEcCCC-
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPW-  331 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~g--d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~Vd~Vvi~~p~-  331 (423)
                      ++++++.|+||++|.||+.++++|++.+  |.+++.++.+..   .|+. .++++.+||+.+++ +++.+|.+.+.+.. 
T Consensus         2 ~~i~i~~GsFDPvH~GH~~li~~a~~~~~~d~v~~~~~~~~~---~k~~-~~~~~~~~R~~ml~~~~~~~~~v~v~~~e~   77 (189)
T 2qtr_A            2 RKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPP---HKQG-RNITSVESRLQMLELATEAEEHFSICLEEL   77 (189)
T ss_dssp             CEEEEEEECCSSCCHHHHC-CHHHHHHTTCSEEEEEECSSCT---TCTT-SCCCCHHHHHHHHHHHHTTCTTEEECCTGG
T ss_pred             CeEEEEecCcccccHHHHHHHHHHHHHcCCCEEEEEECCCCC---CccC-CCCCCHHHHHHHHHHHhCCCCCEEEehHHh
Confidence            4789999999999999999999999998  999999997763   3432 46899999999998 47889998885432 


Q ss_pred             -----CchHHHHhhcCccE------EEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCC-----------------CCCC
Q 014487          332 -----EVTKDMITTFNICL------VVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLES-----------------PKSI  383 (423)
Q Consensus       332 -----~~~~~~i~~~~~d~------vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~-----------------~~~~  383 (423)
                           ..+.+.++.++..+      ++.|.|+..+ +..+. + ++.....+.+..+++                 ...+
T Consensus        78 ~~~~~~~~~~~l~~l~~~~p~~~~~~v~G~D~~~~-~~~w~-~-~~~l~~~~~~~v~~r~~~~~~~~~~v~~~~~~~~~i  154 (189)
T 2qtr_A           78 SRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEY-LPKWY-N-IEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAV  154 (189)
T ss_dssp             GSCSCCCHHHHHHHHHHHCTTCEEEEEEEHHHHHH-GGGST-T-HHHHTTTCEEEEECCTTCCCCCSSCCEEECCCCCCC
T ss_pred             cCCCCCCHHHHHHHHHHHCCCCCEEEEEehhhhhh-hhccC-C-HHHHHHhCCEEEEECCCCCccCCceEEEEcCCCCcc
Confidence                 45667777777555      8999875332 11122 1 222223333322221                 2479


Q ss_pred             CHHHHHHHHHhch
Q 014487          384 TTTSVAQRIIANH  396 (423)
Q Consensus       384 Stt~Ii~RI~~~~  396 (423)
                      |||.|.+++....
T Consensus       155 SST~IR~~l~~g~  167 (189)
T 2qtr_A          155 SSSLLRERYKEKK  167 (189)
T ss_dssp             CHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCC
Confidence            9999999987654

>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3

Probab=99.34  E-value=1e-11  Score=111.86  Aligned_cols=126  Identities=19%  Similarity=0.305  Sum_probs=79.6

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCeeEEEE-ecchhhhccCCCCCCcHHHHHHHHhc-Ccccc-EEEe--cCCcccc
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGV-VSDEEIIANKGPPVLSMEERLALVSG-LKWVD-EVIA--NAPYAIT  141 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV-~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD-~vi~--~~p~~~~  141 (423)
                      +++++|+|||+|.||+.++++|++.+|+++|++ +.++   +.|+.+.++.++|++|++. ++..+ .+..  -..+...
T Consensus         2 i~i~~GsFdp~H~GH~~l~~~a~~~~d~v~v~v~~~~~---p~~~~~~~~~~~R~~m~~~~~~~~~~~v~v~~~d~l~~~   78 (168)
T 1f9a_A            2 RGFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQK---SHTLENPFTAGERILMITQSLKDYDLTYYPIPIKDIEFN   78 (168)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTC---CSSSSCCSCHHHHHHHHHHHHTTSSCEEEEEECCCCSCG
T ss_pred             EEEEEEecCCcCHHHHHHHHHHHHhCCeEEEEEcCCCC---CCCCCCCCCHHHHHHHHHHHHhcCCCceEEEeeCCcccH
Confidence            689999999999999999999999999999988 4443   2333456799999999985 44443 3321  1112111


Q ss_pred             HHHHHHHHh-hcCccEEEEcCCCCCCCCCCcHHHHHHhCC-cEEEeccCC--CCCHHHHHHHHHhc
Q 014487          142 EQFMNRLFN-EHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKRTE--GVSSTDIVGRILSS  203 (423)
Q Consensus       142 ~efl~~ll~-~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~r~~--~iSST~Ir~rI~~~  203 (423)
                      ..+.+.+.+ ...++.++.|.++        ....+...+ .+...+..+  .||||.||+++..+
T Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~ISST~IR~~~~~g  136 (168)
T 1f9a_A           79 SIWVSYVESLTPPFDIVYSGNPL--------VRVLFEERGYEVKRPEMFNRKEYSGTEIRRRMLNG  136 (168)
T ss_dssp             GGHHHHHHHHSCCCSEEECCCHH--------HHHHHHHTTCEEECCCCCSTTTSSHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccCCCEEEECcHH--------HHHhhhhcCcEEEeCCccccCcccHHHHHHHHHcC
Confidence            223221111 2356777777543        112233222 334444433  59999999999865

>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*

Probab=99.31  E-value=7.2e-12  Score=122.11  Aligned_cols=86  Identities=15%  Similarity=0.103  Sum_probs=59.5

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcC--e---eEEEE-ecchhhhccCCCCCCcHHHHHHHHhc-CccccEEEec--
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGD--E---LVVGV-VSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIAN--  135 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d--~---LiVgV-~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~vi~~--  135 (423)
                      +++++++|+|||+|.||+.++++|++.++  .   +++++ .+.. ....| +++++.++|++|++. +...+.+...  
T Consensus         8 ~~i~i~gGsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~-~~~~K-~~l~s~~~R~~ml~~ai~~~~~~~v~~~   85 (279)
T 1kqn_A            8 EVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVG-DAYKK-KGLIPAYHRVIMAELATKNSKWVEVDTW   85 (279)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECC-GGGCC-TTCCCHHHHHHHHHHHTTTCSSEEECCT
T ss_pred             ceEEEEEeeecHhhHHHHHHHHHHHHHhcccCCceEEEEEEcCCC-CCccc-cCCCCHHHHHHHHHHHhcCCCcEEEecc
Confidence            56889999999999999999999999863  2   54332 2222 11233 568999999999985 4566665542  


Q ss_pred             ----CCccccHHHHHHHHhhc
Q 014487          136 ----APYAITEQFMNRLFNEH  152 (423)
Q Consensus       136 ----~p~~~~~efl~~ll~~~  152 (423)
                          ..+.+|.+.++.+-+++
T Consensus        86 E~~~~~~syTidtL~~l~~~~  106 (279)
T 1kqn_A           86 ESLQKEWKETLKVLRHHQEKL  106 (279)
T ss_dssp             GGGCSSCCCHHHHHHHHHHHH
T ss_pred             ccccCCCCcHHHHHHHHHHHH
Confidence                23455667777665666

>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}

Probab=99.30  E-value=3.3e-13  Score=119.70  Aligned_cols=128  Identities=20%  Similarity=0.290  Sum_probs=83.7

Q ss_pred             EEEEcCeeccCCHHHHHHHHHHHhcC-CEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh-h-cc----cCeeEEcCC
Q 014487          258 VVYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-C-RY----VDEVIIGAP  330 (423)
Q Consensus       258 iv~~~G~FDl~H~GHi~~L~~A~~~g-d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~-~-~~----Vd~Vvi~~p  330 (423)
                      .|+++|+|||+|.||+.++++|++++ |+|+|++++|+..++ +  ++|+++.+||+.+++. + +.    +.-+-+.++
T Consensus         2 ~~i~gGtFDPiH~GHl~l~~~a~~~~~d~viv~v~~~~~~~k-~--~~~~~~~~~R~~ml~~a~~~~~~~~~~i~~i~D~   78 (148)
T 3do8_A            2 KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARA-R--IRSVLPFAIRAENVKRYVMRKYGFEPEIVKITNP   78 (148)
T ss_dssp             CEEEEECCSSCCHHHHHHHHHHHHHHTTCEEEEEECHHHHHH-H--SCCCSCHHHHHHHHHHHHHHHHSSCCEEEEECST
T ss_pred             EEEEEeeCCCCCHHHHHHHHHHHHhCCCEEEEEECCCccccc-c--CCCCCCHHHHHHHHHHHHhcccCCcEEEEeecCC
Confidence            48899999999999999999999997 999999999986632 2  2689999999988765 4 32    333334555


Q ss_pred             CCchHHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCe----EEEeCC-----CCCCCHHHHHHHHHhchH
Q 014487          331 WEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGI----FQLLES-----PKSITTTSVAQRIIANHE  397 (423)
Q Consensus       331 ~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~----~~~i~~-----~~~~Stt~Ii~RI~~~~~  397 (423)
                      +..+.    .-.+|++|-+.+-..+     ........+..|.    +..++.     ...+|||.|.+++++.+.
T Consensus        79 ~g~~~----~~~~d~ivvs~Et~~~-----~~~l~~~~~~~G~~~l~V~~v~~~~~~~~~~iSST~IR~~~id~~g  145 (148)
T 3do8_A           79 YGKTL----DVDFEYLVVSPETYEM-----ALKINQKREELGKRKITIVKVDWMMAEDGKPISSTRIKRGEIDRYG  145 (148)
T ss_dssp             TTTTT----TSCCSEEEECTTTHHH-----HHHHHHHHHHHTCCCCEEEEEECCC-------CCCCCCCSCCC---
T ss_pred             CCCCC----CCCCCEEEEChhhccc-----HHHHHHHHHHcCCCeeEEEEeccEEcCCCCEEEHHHHHHHHHhhcC
Confidence            55442    3678889877653221     1111223344454    344432     245899999888877653

>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A

Probab=99.27  E-value=8.9e-12  Score=122.22  Aligned_cols=134  Identities=13%  Similarity=0.060  Sum_probs=95.0

Q ss_pred             EEEcCeeccCCHHHHHHHHHHHhcCCEE---EEEEecChhhhhccC-CCCCCCCHHHHHHHHHhhcccCeeEEc---CCC
Q 014487          259 VYIDGAFDLFHAGHVEILKKARQLGDFL---LVGIYTDQIVSEHRG-SYHPIMHLHERSLSVLACRYVDEVIIG---APW  331 (423)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~L---iVgv~~D~~v~~~Kg-~~~pi~~~~ER~~~v~~~~~Vd~Vvi~---~p~  331 (423)
                      |++.|+||.+|.||..+|++|++++|.+   .|.++.|....-.++ +.+|+++++||+.+++++. ++.|+.+   + .
T Consensus         2 vvtiG~FDgvH~GH~~ll~~a~~~a~~~~~~~vVvtFdphP~~l~~~~~~~l~~~~eR~~ll~~lg-~~~v~~F~~~a-~   79 (293)
T 1mrz_A            2 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSRYA-RTVVLDFFRIK-D   79 (293)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTTCCCBSSCHHHHHHHHTTTS-CEEEECHHHHT-T
T ss_pred             EEEEeeCccccHHHHHHHHHHHHHHHHcCCeEEEEEecCCHHHhCCCCCCCCCCHHHHHHHHHhCC-CEEEEEhHHhh-c
Confidence            6788999999999999999999998763   355665642211222 2368999999999999998 6666654   2 2


Q ss_pred             CchHHHHhh--cCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCC----CCCCCHHHHHHHHHhch
Q 014487          332 EVTKDMITT--FNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLES----PKSITTTSVAQRIIANH  396 (423)
Q Consensus       332 ~~~~~~i~~--~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~----~~~~Stt~Ii~RI~~~~  396 (423)
                      ..+.++++.  ++++++|.|.||....  ....+...+.+.++.+..++.    ...+|||.|.+.|.+..
T Consensus        80 ls~~~Fi~~ill~~~~iVvG~Df~fG~--~~~g~~~~L~~~G~~V~~v~~~~~~~~~iSST~IR~~L~~G~  148 (293)
T 1mrz_A           80 LTPEGFVERYLSGVSAVVVGRDFRFGK--NASGNASFLRKKGVEVYEIEDVVVQGKRVSSSLIRNLVQEGR  148 (293)
T ss_dssp             CCHHHHHHHHCTTCCEEEEETTCCBSG--GGCBCHHHHHHTTCEEEEECCCEETTEECCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHhcCCCEEEECCCCCCCC--CCCCCHHHHHhCCCEEEEECCEEeCCccccHhHHHHHHhcCc
Confidence            345778888  9999999999986542  111233333334456777764    35799999988886653

>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*

Probab=99.26  E-value=1.5e-11  Score=118.10  Aligned_cols=88  Identities=14%  Similarity=0.088  Sum_probs=58.9

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCe----eEEEEecchhhhccCCCCCCcHHHHHHHHhc-CccccEEEe-----
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDE----LVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIA-----  134 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~----LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~vi~-----  134 (423)
                      +++++++|+|||+|.||+.++++|++.++.    .+|++...+.....+++++++.++|++|++. +...+.+..     
T Consensus         6 ~~i~i~~GsFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~m~~~ai~~~~~~~v~~~E~   85 (252)
T 1nup_A            6 PVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWIRVDPWES   85 (252)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCSSSCCCCHHHHHHHHHHHGGGCSSEEECCHHH
T ss_pred             ceEEEEEecCcHhhHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCcccCCCCCCHHHHHHHHHHHhcCCCceEeehHHh
Confidence            568999999999999999999999998742    4443333332112222468999999999984 333333332     


Q ss_pred             -cCCccccHHHHHHHHhhc
Q 014487          135 -NAPYAITEQFMNRLFNEH  152 (423)
Q Consensus       135 -~~p~~~~~efl~~ll~~~  152 (423)
                       ...+.+|.+.++.+-+++
T Consensus        86 ~~~~~syTidtL~~l~~~~  104 (252)
T 1nup_A           86 EQAQWMETVKVLRHHHSKL  104 (252)
T ss_dssp             HSSSCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence             234556667777665555

>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*

Probab=99.25  E-value=5.2e-11  Score=113.69  Aligned_cols=92  Identities=21%  Similarity=0.196  Sum_probs=75.5

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcC--CEEEEEEecChhhhhccCCCCCCCCHHHHHHHHH-hhcccCeeEEcCCC
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPW  331 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~g--d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~Vd~Vvi~~p~  331 (423)
                      .++++++.|+|||+|.||+.++++|++.+  |.++|+++.|..   .|+  .++++.++|+.+++ +++.++.|.+.+..
T Consensus        22 ~~~i~i~~GsFdPiH~GHl~li~~a~~~~~ld~v~v~~~~~~p---~K~--~~~~~~~~R~~ml~~a~~~~~~v~v~~~e   96 (242)
T 1yum_A           22 GKRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPP---HRE--TPQVSAAQRLAMVERAVAGVERLTVDPRE   96 (242)
T ss_dssp             CCEEEEEEECCTTCCHHHHHHHHHHHHHHTCSEEEEEECCCCG---GGS--CTTCCHHHHHHHHHHHHTTCTTEEECCGG
T ss_pred             CceEEEEEeeCcHhhHHHHHHHHHHHHHcCCCEEEEEEcCCCC---CCC--CCCCCHHHHHHHHHHHhcCCCeEEEeeee
Confidence            36789999999999999999999999988  999999998852   242  47899999999998 68899998885522


Q ss_pred             ------CchHHHHhhc----Ccc---EEEecCC
Q 014487          332 ------EVTKDMITTF----NIC---LVVHGTV  351 (423)
Q Consensus       332 ------~~~~~~i~~~----~~d---~vv~G~d  351 (423)
                            ..+.+.++.+    +|+   +++.|.|
T Consensus        97 ~~~~~~sytvdtl~~l~~~~~p~~~~~fI~G~D  129 (242)
T 1yum_A           97 LQRDKPSYTIDTLESVRAELAADDQLFMLIGWD  129 (242)
T ss_dssp             GGSSSSCCHHHHHHHHHHHSCTTCEEEEEEEHH
T ss_pred             ecCCCCCCHHHHHHHHHHHhCCCCcEEEEEehh
Confidence                  4677777665    677   7888874

>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*

Probab=99.21  E-value=3.6e-11  Score=112.25  Aligned_cols=91  Identities=16%  Similarity=0.133  Sum_probs=73.1

Q ss_pred             eE-EEEcCeeccCCHHHHHHHHHHHhcC--CEEEEEEecChhhhhccCCCCCCCCHHHHHHHHH-hhcccCeeEEcCC--
Q 014487          257 RV-VYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAP--  330 (423)
Q Consensus       257 ~i-v~~~G~FDl~H~GHi~~L~~A~~~g--d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~Vd~Vvi~~p--  330 (423)
                      ++ +++.|+||++|.||+.++++|++.+  |.+++.++.+..   .|.  .++++.+||+.+++ +++.+|.|.+.+.  
T Consensus         3 ~i~~i~~GsFdPiH~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~--~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~   77 (213)
T 1k4m_A            3 SLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP---HRP--QPEANSVQRKHMLELAIADKPLFTLDEREL   77 (213)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCT---TSC--CCSSCHHHHHHHHHHHHTTCTTEEECCHHH
T ss_pred             eEEEEEEeCcCCCCHHHHHHHHHHHHHcCCCEEEEEECCCCC---CCC--CCCCCHHHHHHHHHHHhccCCCEEEeHHHh
Confidence            46 8999999999999999999999987  899998887753   242  36899999999997 7889999888532  


Q ss_pred             ----CCchHHHHhhc----Ccc---EEEecCCc
Q 014487          331 ----WEVTKDMITTF----NIC---LVVHGTVS  352 (423)
Q Consensus       331 ----~~~~~~~i~~~----~~d---~vv~G~d~  352 (423)
                          ...+.++++.+    +|+   +++.|.|.
T Consensus        78 ~~~~~s~t~~~l~~l~~~~~~~~~~~~i~G~D~  110 (213)
T 1k4m_A           78 KRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDS  110 (213)
T ss_dssp             HCSSCCCHHHHHHHHHHHHCTTSCEEEEEEHHH
T ss_pred             cCCCCCcHHHHHHHHHHHhCCCCcEEEEEehhh
Confidence                13456666655    899   89999753

>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}

Probab=99.19  E-value=1e-12  Score=127.78  Aligned_cols=112  Identities=14%  Similarity=0.185  Sum_probs=78.4

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCC---CCCCcHHHHHHHHhcCccccEEEecCCc-ccc-
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG---PPVLSMEERLALVSGLKWVDEVIANAPY-AIT-  141 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~---~pi~t~eER~~~l~~~~~VD~vi~~~p~-~~~-  141 (423)
                      +|.+.|+||++|.||+.+|++|++.++.++|++.+++.-...+.   +.+.+.++|+++++++ +||.++. .++ .++ 
T Consensus        23 ~V~~vgtfdgLH~GH~sLI~~A~~~ad~vVVSffvnP~qf~~~ed~~~yp~tle~d~~lL~~~-GVD~vf~-p~~~~m~p  100 (280)
T 2ejc_A           23 TIGFVPTMGYLHEGHLSLVRRARAENDVVVVSIFVNPTQFGPNEDYERYPRDFERDRKLLEKE-NVDCIFH-PSVEEMYP  100 (280)
T ss_dssp             CEEEEEECSCCCHHHHHHHHHHHHHSSEEEEEECCCGGGCCTTSCGGGSCCCHHHHHHHHHTT-TCSEEEC-CCHHHHSC
T ss_pred             EEEEEcCCccccHHHHHHHHHHHHhCCEEEEEEeCChHHhcCCcccccCCCCHHHHHHHHHHC-CCCEEEe-CCHHHCCC
Confidence            46666999999999999999999999999999977665322111   3467899999999998 6999997 222 111 


Q ss_pred             HHHH--------HH-HHhhcCccE------------EEEc-CCCCCCCCCCcHHHHHHhCC
Q 014487          142 EQFM--------NR-LFNEHKIDY------------IIHG-DDPCLLPDGTDAYALAKKVG  180 (423)
Q Consensus       142 ~efl--------~~-ll~~~~~d~------------VV~G-~D~~~g~~g~~~~~~lk~~g  180 (423)
                      ++|.        .. +..+++|.+            .++| +|++||.+..+....+++.+
T Consensus       101 ~~f~~~v~~~~~~~~l~G~~rp~hF~Gv~tvv~kLf~iv~p~~~~FG~kd~qq~~~l~~~~  161 (280)
T 2ejc_A          101 PDFSTYVEETKLSKHLCGRSRPGHFRGVCTVVTKLFNIVKPHRAYFGQKDAQQFRVLRRMV  161 (280)
T ss_dssp             TTCCCCCCCCSGGGTTTGGGSTTHHHHHHHHHHHHHHHHCCSEEEEEGGGHHHHHHHHHHH
T ss_pred             cCceEEEEcCCcceEEecCCCCCeecceEEEEeeeceeccCceEEeCCCCCcCHHHHHHHH
Confidence            1232        11 112233333            4444 48999988888888887655

>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}

Probab=99.14  E-value=7.3e-11  Score=107.58  Aligned_cols=131  Identities=13%  Similarity=0.075  Sum_probs=85.8

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh-hcccC--eeEEcC---
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVD--EVIIGA---  329 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~-~~~Vd--~Vvi~~---  329 (423)
                      +++++++|+|||+|.||+.+++ |.+.+|.|++++..+.   ..|   ++.++.++|+.+++. ++..+  .+.+.+   
T Consensus         2 ~~igi~gGsFdPih~GHl~i~~-a~~~~d~v~~~p~~~~---~~k---~~~~~~~~R~~m~~~a~~~~~~~~~~v~~~E~   74 (177)
T 3h05_A            2 KKIAIFGSAFNPPSLGHKSVIE-SLSHFDLVLLEPSIAH---AWG---KNMLDYPIRCKLVDAFIKDMGLSNVQRSDLEQ   74 (177)
T ss_dssp             CEEEEEEECCSSCCHHHHHHHT-TCTTSSEEEEEECC-------------CCCHHHHHHHHHHHHHHHCCTTEEECCHHH
T ss_pred             cEEEEEEeccchhhHHHHHHHH-HHHHCCEEEEEECCCC---CCC---CCCCCHHHHHHHHHHHHhcCCCCcEEEEehhh
Confidence            4789999999999999999998 7777799999998762   223   478999999988865 55432  344321   


Q ss_pred             -----C-CCchHHHHhh---cCcc---EEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhch
Q 014487          330 -----P-WEVTKDMITT---FNIC---LVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANH  396 (423)
Q Consensus       330 -----p-~~~~~~~i~~---~~~d---~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI~~~~  396 (423)
                           . ...|.+.++.   .-|+   +++.|.|...+ +..|. +...+.+ ...++.+++...+|+|.|.++|.+.+
T Consensus        75 ~l~~~~~~syT~dTl~~l~~~~p~~~~~~iiG~D~l~~-l~~W~-~~~~l~~-~~~~vv~~r~~~iSST~IR~~i~~g~  150 (177)
T 3h05_A           75 ALYQPGQSVTTYALLEKIQEIYPTADITFVIGPDNFFK-FAKFY-KAEEITE-RWTVMACPEKVKIRSTDIRNALIEGK  150 (177)
T ss_dssp             HHC----CCCHHHHHHHHHHHSTTSEEEEEECHHHHHT-GGGST-THHHHHH-HSEEEECCCSSCCCHHHHHHHHHHTC
T ss_pred             hcccCCCCcchHHHHHHHHHHhcCCCeEEEEecchhhh-cccch-hHHHHHH-hCCEEEEcCCCCCcHHHHHHHHHcCC
Confidence                 1 2234444443   3343   46889875332 21222 2333333 34566778888999999999998764

>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*

Probab=99.11  E-value=1.7e-10  Score=105.63  Aligned_cols=134  Identities=15%  Similarity=0.080  Sum_probs=89.8

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcC--CEEEEEEecChhhhhccCCCCCCCCHHHHHHHHH-hhcccCeeEEcC---
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGA---  329 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~g--d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~Vd~Vvi~~---  329 (423)
                      ++++++.|+|||+|.||+.++++|++.+  |.+++..+.+..   .|+. .|+++.++|+.+++ +++..+.|.+.+   
T Consensus         2 ~~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~-~~~~~~~~R~~m~~~a~~~~~~v~v~~~e~   77 (189)
T 2h29_A            2 KKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSP---LKKH-HDFIDVQHRLTMIQMIIDELGFGDICDDEI   77 (189)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECSBCT---TSCC-CSSCCCHHHHHHHHHHHHHHTCCEECCHHH
T ss_pred             ceEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEECCCCC---CCcC-CCCCCHHHHHHHHHHHHcCCCCEEEehHHh
Confidence            3689999999999999999999999887  888887777753   3432 57899999998887 588888877743   


Q ss_pred             ---CCCchHHHHhh---cCcc---EEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCC-----------------CCCC
Q 014487          330 ---PWEVTKDMITT---FNIC---LVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLES-----------------PKSI  383 (423)
Q Consensus       330 ---p~~~~~~~i~~---~~~d---~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~-----------------~~~~  383 (423)
                         ....+.+.++.   ..|+   +++.|.|...+ +..|.. ...+.+.. .+..+++                 ...+
T Consensus        78 ~~~~~syt~dtl~~l~~~~p~~~~~~i~G~D~~~~-~~~W~~-~~~i~~~~-~~~v~~R~~~~~~~~~~i~~~~~~~~~I  154 (189)
T 2h29_A           78 KRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQ-LEKWYQ-IEYLKEMV-TFVVVNRDKNSQNVENAMIAIQIPRVDI  154 (189)
T ss_dssp             HHCSBCCHHHHHHHHHHHSTTEEEEEEEEHHHHTT-GGGSTT-HHHHHHHC-EEEEECCSSSCCCCCTTSEEECCCCBCC
T ss_pred             cCCCCCCHHHHHHHHHHHCCCCcEEEEEecchhhh-hccccC-HHHHHhhC-cEEEEECCCCccccCCcEEEEcCCCCcc
Confidence               12245555543   3466   88999875432 212221 11222221 2222222                 2479


Q ss_pred             CHHHHHHHHHhch
Q 014487          384 TTTSVAQRIIANH  396 (423)
Q Consensus       384 Stt~Ii~RI~~~~  396 (423)
                      |+|.|.+++....
T Consensus       155 SST~IR~~i~~g~  167 (189)
T 2h29_A          155 SSTMIRQRVSEGK  167 (189)
T ss_dssp             CHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCC
Confidence            9999999987653

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.10  E-value=6.7e-10  Score=111.46  Aligned_cols=129  Identities=21%  Similarity=0.214  Sum_probs=83.1

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhh-----hccCCCCCCcHHHHHHHHhc-CccccE-EE----
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI-----IANKGPPVLSMEERLALVSG-LKWVDE-VI----  133 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i-----~~~K~~pi~t~eER~~~l~~-~~~VD~-vi----  133 (423)
                      ++++++.|+|||+|.||+.++++|.+++|+|+|+|.+++..     ...+.+..++.+||++|++. ++..+. +.    
T Consensus         2 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~d~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~R~~m~~~~~~~~~~~~~v~~~   81 (365)
T 1lw7_A            2 KKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFKYQKNQIFIHHL   81 (365)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTCSEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTSTTTTTEEEEEE
T ss_pred             CcEEEEEEeeCCCCHHHHHHHHHHHHHCCEEEEEECCCCccccccccccccCCCCCHHHHHHHHHHHhhcCCCcEEEEEe
Confidence            35799999999999999999999999999999999998853     11111234999999999974 344332 11    


Q ss_pred             ecCCccc----c---HHHHHHHHh--hcCccEEEEcCCCCCCCCCCcHHHHHHhCC-cEEEec--c-CCCCCHHHHHHHH
Q 014487          134 ANAPYAI----T---EQFMNRLFN--EHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIK--R-TEGVSSTDIVGRI  200 (423)
Q Consensus       134 ~~~p~~~----~---~efl~~ll~--~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~--r-~~~iSST~Ir~rI  200 (423)
                      .+.+...    .   ...+..++.  .+++++++.++++.       .....+..+ +++.++  + ...||||.||+..
T Consensus        82 ~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~-------~~~~~~~~~~e~v~l~~~~~~~~iSsT~IRe~~  154 (365)
T 1lw7_A           82 VEDGIPSYPNGWQSWSEAVKTLFHEKHFEPSIVFSSEPQD-------KAPYEKYLGLEVSLVDPDRTFFNVSATKIRTTP  154 (365)
T ss_dssp             ECSSSCCTTSCHHHHHHHHHHHHHHTTCCCSEEECSCGGG-------HHHHHHHTCCEEECCCSSCCSSCCCHHHHHHCG
T ss_pred             ccCCCCCCchHHHHHHHHHHHHhhccCCCCcEEEECCCCC-------HHHHHHHcCCceEEeCCcccCCCCCHHHHHhCh
Confidence            1111111    0   123333444  36788877676542       112333333 455554  2 3479999999864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.09  E-value=2.3e-10  Score=114.84  Aligned_cols=125  Identities=17%  Similarity=0.210  Sum_probs=81.1

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhh-----hccCCCCCCCCHHHHHHHHH-hhcccCe-eEEc
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVS-----EHRGSYHPIMHLHERSLSVL-ACRYVDE-VIIG  328 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~-----~~Kg~~~pi~~~~ER~~~v~-~~~~Vd~-Vvi~  328 (423)
                      ++++++.|+|||+|.||+.++++|++++|+|+|++.+++.-.     ..+.+ .| ++.+||+.+++ +++..+. |.+.
T Consensus         2 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~d~v~v~~~~~~~~~~~~~~~~~~~-~~-~~~~~R~~m~~~~~~~~~~~~~v~   79 (365)
T 1lw7_A            2 KKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMK-RM-PTVQDRLRWMQQIFKYQKNQIFIH   79 (365)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTCSEEEEEEEECHHHHHHHHHHTTCS-SC-CCHHHHHHHHHHHTSTTTTTEEEE
T ss_pred             CcEEEEEEeeCCCCHHHHHHHHHHHHHCCEEEEEECCCCccccccccccccC-CC-CCHHHHHHHHHHHhhcCCCcEEEE
Confidence            578999999999999999999999999999999999997431     11112 35 89999998885 5677665 4442


Q ss_pred             CC--CC--c-------hHH----HHh--hcCccEEEecCCcCCCCCCCCCCChHHHHHhCC-eEEEeC--C-CCCCCHHH
Q 014487          329 AP--WE--V-------TKD----MIT--TFNICLVVHGTVSETNTPLTGQSDPYEVAKSMG-IFQLLE--S-PKSITTTS  387 (423)
Q Consensus       329 ~p--~~--~-------~~~----~i~--~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G-~~~~i~--~-~~~~Stt~  387 (423)
                      ..  ..  .       -.+    +++  .+++++++.+..+..          ....+..| ..++++  + ...+|+|.
T Consensus        80 ~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~----------~~~~~~~~~e~v~l~~~~~~~~iSsT~  149 (365)
T 1lw7_A           80 HLVEDGIPSYPNGWQSWSEAVKTLFHEKHFEPSIVFSSEPQDK----------APYEKYLGLEVSLVDPDRTFFNVSATK  149 (365)
T ss_dssp             EEECSSSCCTTSCHHHHHHHHHHHHHHTTCCCSEEECSCGGGH----------HHHHHHTCCEEECCCSSCCSSCCCHHH
T ss_pred             EeccCCCCCCchHHHHHHHHHHHHhhccCCCCcEEEECCCCCH----------HHHHHHcCCceEEeCCcccCCCCCHHH
Confidence            11  00  0       011    233  357777775543210          12234445 344555  2 35799998


Q ss_pred             HHHHH
Q 014487          388 VAQRI  392 (423)
Q Consensus       388 Ii~RI  392 (423)
                      |.+..
T Consensus       150 IRe~~  154 (365)
T 1lw7_A          150 IRTTP  154 (365)
T ss_dssp             HHHCG
T ss_pred             HHhCh
Confidence            87753

>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}

Probab=99.09  E-value=4.4e-10  Score=112.26  Aligned_cols=138  Identities=14%  Similarity=0.096  Sum_probs=95.6

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCE---EEEEEecChhhhhc-cCC--CCCCCCHHHHHHHHHhhcccCeeEEcC
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDF---LLVGIYTDQIVSEH-RGS--YHPIMHLHERSLSVLACRYVDEVIIGA  329 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~---LiVgv~~D~~v~~~-Kg~--~~pi~~~~ER~~~v~~~~~Vd~Vvi~~  329 (423)
                      ..+|++-|+||.+|.||..+|++|++.++.   ..|+++.|...... ++.  ..++++++||+.++.++. ||.|++.+
T Consensus        15 ~~~vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vvvtFdphP~~v~~~~~~~~~L~~~~eR~~ll~~~g-VD~v~v~~   93 (338)
T 2x0k_A           15 DNSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAESFG-IDGVLVID   93 (338)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCHHHHHSTTCSCCBSSCHHHHHHHHHHTT-CSEEEEEC
T ss_pred             CCeEEEEEeCCcccHHHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHcCCccCCCCCCCHHHHHHHHHhcC-CCEEEEcc
Confidence            357899999999999999999999998865   47888888754332 111  257999999999999987 99988743


Q ss_pred             C-----CCchHHHHhh-----cCccEEEecCCcCCCCCCCCCCChHH---HHHhCCeEEEeCC----CCCCCHHHHHHHH
Q 014487          330 P-----WEVTKDMITT-----FNICLVVHGTVSETNTPLTGQSDPYE---VAKSMGIFQLLES----PKSITTTSVAQRI  392 (423)
Q Consensus       330 p-----~~~~~~~i~~-----~~~d~vv~G~d~~~~~~~~~~~d~~~---~~k~~G~~~~i~~----~~~~Stt~Ii~RI  392 (423)
                      .     ...+.++++.     ++++.+|.|.|+....-  ..-+...   ..+.+..+..++.    ...+|||.|.+.|
T Consensus        94 F~~~~a~ls~e~Fi~~il~~~l~~~~ivvG~Df~FG~~--r~g~~~~L~~~~~~g~~V~~v~~~~~~~~~ISST~IR~~L  171 (338)
T 2x0k_A           94 FTRELSGTSPEKYVEFLLEDTLHASHVVVGANFTFGEN--AAGTADSLRQICQSRLTVDVIDLLDDEGVRISSTTVREFL  171 (338)
T ss_dssp             TTTSSSSCCHHHHHHHCCCCCTCEEEEEEETTCEESGG--GCEEHHHHHHHTTTTSEEEEECCCEETTEECSHHHHHHHH
T ss_pred             ccHHHHhCCHHHHHHHHHHhhcCCCEEEEeecCCCCCC--CCCCHHHHHHHhcCCeEEEEECcEecCCcccccchHHHHH
Confidence            2     1234567665     68999999999854311  1112212   2223224556665    3469999998887


Q ss_pred             Hhch
Q 014487          393 IANH  396 (423)
Q Consensus       393 ~~~~  396 (423)
                      .+..
T Consensus       172 ~~G~  175 (338)
T 2x0k_A          172 SEGD  175 (338)
T ss_dssp             HTTC
T ss_pred             hcCc
Confidence            6554

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.04  E-value=1e-09  Score=109.04  Aligned_cols=130  Identities=13%  Similarity=0.134  Sum_probs=81.6

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCc-c-----cc-EEEecCC
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK-W-----VD-EVIANAP  137 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~-~-----VD-~vi~~~p  137 (423)
                      +++++++|+||++|.||+.++++|.+++|.++|+|.+++..  .+..+.++.++|++|++..- .     .. +++....
T Consensus         7 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~d~~~~~v~~~~~~--~~~~~~~~~~~R~~m~~~~~~~~~~~~~~~~~~~~~d   84 (352)
T 2qjt_B            7 YDISVFIGRFQPFHKGHLHNIIIALQNSKKVIINIGSCFNT--PNIKNPFSFEQRKQMIESDLQVAGIDLDTVVIEPLAD   84 (352)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHSEEEEEEEEEEESCC--CCSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEEEEC
T ss_pred             ccEEEEEEecCCCChHHHHHHHHHHHhCCcEEEEECCCCCC--cccCCCCCHHHHHHHHHHHhccccCccceEEEEEcCC
Confidence            46899999999999999999999999999999999987632  22256789999999998521 1     11 2222111


Q ss_pred             c----cccHHHHHHHHhh---cCccEEEEcCCCCCCCCCCcHHHHHHhCC--cEEEeccCCCCCHHHHHHHHHh
Q 014487          138 Y----AITEQFMNRLFNE---HKIDYIIHGDDPCLLPDGTDAYALAKKVG--RYKQIKRTEGVSSTDIVGRILS  202 (423)
Q Consensus       138 ~----~~~~efl~~ll~~---~~~d~VV~G~D~~~g~~g~~~~~~lk~~g--~~~~v~r~~~iSST~Ir~rI~~  202 (423)
                      +    ....+++++.+.+   +.++++++|..-     +...+ .+....  ....++....+|||.||+++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~-----~~~~~-~~~~~~~~~~~~~~~~~~iSST~IR~~~~~  152 (352)
T 2qjt_B           85 YFYQEQKWQDELRKNVYKHAKNNNSIAIVGHIK-----DSSSY-YIRSFPEWDYIGVDNYKNFNATEFRQKFYN  152 (352)
T ss_dssp             CTTCHHHHHHHHHHHHTTTSCSSCCEEECCBSS-----SSHHH-HHHHCTTSEECCBCCTTCCCHHHHHHHHHT
T ss_pred             CcCChHHHHHHHHHHHHHhcccCCeEEEEcCCC-----Ccchh-hhhcCCccceeccCCCCCCCchHHHHHHhc
Confidence            1    1112444433221   235677777541     11222 222221  2233334467999999999985

>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3

Probab=99.02  E-value=5.8e-09  Score=93.74  Aligned_cols=124  Identities=21%  Similarity=0.250  Sum_probs=77.7

Q ss_pred             EEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHH-hhcccC-eeEE--cCCCC-
Q 014487          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVD-EVII--GAPWE-  332 (423)
Q Consensus       258 iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~Vd-~Vvi--~~p~~-  332 (423)
                      ++++.|+||++|.||+.++++|++.+|.++|+|.+...  ..|.  .+.++.++|+.+++ +++..+ .+.+  .+.+. 
T Consensus         2 i~i~~GsFdp~H~GH~~l~~~a~~~~d~v~v~v~~~~~--p~~~--~~~~~~~~R~~m~~~~~~~~~~~v~v~~~d~l~~   77 (168)
T 1f9a_A            2 RGFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQK--SHTL--ENPFTAGERILMITQSLKDYDLTYYPIPIKDIEF   77 (168)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTC--CSSS--SCCSCHHHHHHHHHHHHTTSSCEEEEEECCCCSC
T ss_pred             EEEEEEecCCcCHHHHHHHHHHHHhCCeEEEEEcCCCC--CCCC--CCCCCHHHHHHHHHHHHhcCCCceEEEeeCCccc
Confidence            68999999999999999999999999999999943322  2232  24569999998887 467666 4433  22221 


Q ss_pred             --chHHHHhhc--CccEEEecCCcCCCCCCCCCCChHHHHHhCCe-EEEeCCCC--CCCHHHHHHHHHhch
Q 014487          333 --VTKDMITTF--NICLVVHGTVSETNTPLTGQSDPYEVAKSMGI-FQLLESPK--SITTTSVAQRIIANH  396 (423)
Q Consensus       333 --~~~~~i~~~--~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~-~~~i~~~~--~~Stt~Ii~RI~~~~  396 (423)
                        .-.++++.+  ..++++-|.++           ........++ +...+...  .+|+|.|.+++....
T Consensus        78 ~~~w~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~i~~~~~~~~~~~~ISST~IR~~~~~g~  137 (168)
T 1f9a_A           78 NSIWVSYVESLTPPFDIVYSGNPL-----------VRVLFEERGYEVKRPEMFNRKEYSGTEIRRRMLNGE  137 (168)
T ss_dssp             GGGHHHHHHHHSCCCSEEECCCHH-----------HHHHHHHTTCEEECCCCCSTTTSSHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhccCCCEEEECcHH-----------HHHhhhhcCcEEEeCCccccCcccHHHHHHHHHcCC
Confidence              112333332  34556544321           0112223343 33333322  499999999997643

>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}

Probab=99.01  E-value=2.1e-09  Score=105.87  Aligned_cols=136  Identities=18%  Similarity=0.174  Sum_probs=94.7

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEE---EEEEecChhhhhcc-C----CCCCCCCHHHHHHHHHhhcccCeeEE
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFL---LVGIYTDQIVSEHR-G----SYHPIMHLHERSLSVLACRYVDEVII  327 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~L---iVgv~~D~~v~~~K-g----~~~pi~~~~ER~~~v~~~~~Vd~Vvi  327 (423)
                      ...|++-|.||-+|.||..+|++|++.++.+   .|.++-|......- +    ..+++++++||+..+.++. ||.+++
T Consensus        20 ~~~vvtiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV~TFdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~lG-VD~v~~   98 (308)
T 3op1_A           20 SDSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKREG-VEELYL   98 (308)
T ss_dssp             SCEEEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHHT-CCEEEE
T ss_pred             CCeEEEEecCCcccHHHHHHHHHHHHHHHhcCCceEEEEecCCHHHHhCccccCCcccCCCHHHHHHHHHHcC-CCEEEE
Confidence            4679999999999999999999999988654   56677665332211 1    1257999999999999998 999987


Q ss_pred             cCCC-----CchHHH----HhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCC--eEEEeCC----CCCCCHHHHHHHH
Q 014487          328 GAPW-----EVTKDM----ITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMG--IFQLLES----PKSITTTSVAQRI  392 (423)
Q Consensus       328 ~~p~-----~~~~~~----i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G--~~~~i~~----~~~~Stt~Ii~RI  392 (423)
                      .+..     ..+.++    +++++++.+|.|.|+.-.. .....+   ..+..|  .+..++.    ...+|||.|.+-|
T Consensus        99 ~~F~~~~a~ls~e~Fv~~ll~~l~~~~ivvG~DfrFG~-r~G~~~---~L~~~~~~~V~~v~~~~~~~~~ISST~IR~~L  174 (308)
T 3op1_A           99 LDFSSQFASLTAQEFFATYIKAMNAKIIVAGFDYTFGS-DKKTAE---DLKNYFDGEVIIVPPVEDEKGKISSTRIRQAI  174 (308)
T ss_dssp             ECCCHHHHTCCHHHHHHHHHHHHTEEEEEEETTCCBTT-TTBCST---THHHHCSSEEEEECCCBCSSCBCCHHHHHHHH
T ss_pred             ecCCHHHHcCCHHHHHHHHHHHcCCCEEEECcCCCCCC-cCCCHH---HHHHhCCCCEEEeCCEecCCceEeHHHHHHHH
Confidence            4421     123444    4578999999999986543 122221   122223  4556654    3569999999888


Q ss_pred             Hhch
Q 014487          393 IANH  396 (423)
Q Consensus       393 ~~~~  396 (423)
                      .+..
T Consensus       175 ~~G~  178 (308)
T 3op1_A          175 LDGN  178 (308)
T ss_dssp             HHTC
T ss_pred             HcCC
Confidence            6554

>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*

Probab=98.98  E-value=3.1e-09  Score=96.63  Aligned_cols=125  Identities=18%  Similarity=0.129  Sum_probs=81.6

Q ss_pred             eEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh-hccc----CeeEEc--C
Q 014487          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYV----DEVIIG--A  329 (423)
Q Consensus       257 ~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~-~~~V----d~Vvi~--~  329 (423)
                      +++++.|+||++|.||+.++++|++.+|.++|++.++..  ..|.  .++++.+||+.+++. +...    |.+.+.  +
T Consensus         4 ~~~i~~G~Fdp~H~GH~~l~~~a~~~~d~v~v~v~~~~~--p~~~--~~~~~~~~R~~~~~~a~~~~~~~~~~v~v~~~d   79 (181)
T 1ej2_A            4 MRGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQL--SHSI--RDPFTAGERVMMLTKALSENGIPASRYYIIPVQ   79 (181)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTC--CSSS--SSCSCHHHHHHHHHHHHHHTTCCGGGEEEEECC
T ss_pred             eEEEEEEEcCCcCHHHHHHHHHHHHhCCeeEEEECCCCC--CcCC--CCCCCHHHHHHHHHHHHhhCCCCCCcEEEEecC
Confidence            579999999999999999999999999999999955432  2232  357799999988865 4544    455442  2


Q ss_pred             CCCc---hHHHHhhc--CccEEEecCCcCCCCCCCCCCChHHHHHhCCe-EEEeCCCC--CCCHHHHHHHHHhch
Q 014487          330 PWEV---TKDMITTF--NICLVVHGTVSETNTPLTGQSDPYEVAKSMGI-FQLLESPK--SITTTSVAQRIIANH  396 (423)
Q Consensus       330 p~~~---~~~~i~~~--~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~-~~~i~~~~--~~Stt~Ii~RI~~~~  396 (423)
                      ....   ..++++.+  ..++++-|.++.           ....+..|. +..++...  .+|+|.|.+++....
T Consensus        80 ~~~~~~~w~~~~~~l~~~~~~~v~gr~~~-----------~~~~~~~~i~~~~~~~~~~~~ISST~IR~~l~~G~  143 (181)
T 1ej2_A           80 DIECNALWVGHIKMLTPPFDRVYSGNPLV-----------QRLFSEDGYEVTAPPLFYRDRYSGTEVRRRMLDDG  143 (181)
T ss_dssp             CCSCHHHHHHHHHHHSCCCSEEECCCHHH-----------HHHHHHTTCCEECCCCSSTTTSSHHHHHHHHHHTC
T ss_pred             ccCCHHHHHHHHHHHCCCCCEEEECCHHH-----------HHHHHhCCeEEEecCCCccCcCcHHHHHHHHHcCC
Confidence            2211   22344443  567777775430           112233343 34444433  499999999987643

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=98.89  E-value=2.6e-09  Score=105.35  Aligned_cols=128  Identities=14%  Similarity=0.213  Sum_probs=83.5

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhh-ccc--Ce--eEEcCC
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYV--DE--VIIGAP  330 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~-~~V--d~--Vvi~~p  330 (423)
                      ++++++.|+||++|.||+.++++|++.+|.++|+|.++..-.  +.  ...++.++|+.+++.. ...  +.  +++++.
T Consensus         7 ~~~~i~~G~FdP~H~GH~~li~~a~~~~d~v~v~v~~~~~p~--~~--~~~~~~~~R~~m~~~~~~~~~~~~~~~i~~~d   82 (341)
T 2qjo_A            7 YQYGIYIGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRVAA--DT--RNPWRSPERMAMIEACLSPQILKRVHFLTVRD   82 (341)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHEEEEEEEEEEETCCC--CS--SSCSCHHHHHHHHHTTSCHHHHTTEEEEEEEC
T ss_pred             eeEEEEEEEeCCCCHHHHHHHHHHHHhCCeEEEEECCcccCC--CC--CCCCCHHHHHHHHHHHhhhccCCeEEEEECCC
Confidence            578999999999999999999999999999999999885422  21  2347999999888754 433  22  333432


Q ss_pred             CC-------c-hHHHHhhcC---ccEEEecCCcCCCCCCCCCCChHHHHHhC-C-eEEEeCCCCCCCHHHHHHHHHhch
Q 014487          331 WE-------V-TKDMITTFN---ICLVVHGTVSETNTPLTGQSDPYEVAKSM-G-IFQLLESPKSITTTSVAQRIIANH  396 (423)
Q Consensus       331 ~~-------~-~~~~i~~~~---~d~vv~G~d~~~~~~~~~~~d~~~~~k~~-G-~~~~i~~~~~~Stt~Ii~RI~~~~  396 (423)
                      .-       . ..++++.+.   .++++-|.+.....        + ..+.. | ....++....+|+|.|.+++....
T Consensus        83 ~~~~~~~w~~~~~~l~~~l~r~~~~~~~~g~~~~~~~--------~-~~~~~~~~~~~~~~~~~~iSST~IR~~l~~g~  152 (341)
T 2qjo_A           83 WLYSDNLWLAAVQQQVLKITGGSNSVVVLGHRKDASS--------Y-YLNLFPQWDYLETGHYPDFSSTAIRGAYFEGK  152 (341)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTTCSCEEEEECCCSGGG--------G-GGGSCTTSEEEECCCCTTCCHHHHHHHHHHTC
T ss_pred             CcCChHHHHHHHHHHhHHhcCCCceEEEEcCCCCCCh--------H-HHHhccccceeecccCCCCCcHHHHHHHHcCC
Confidence            20       0 112333332   57777786542211        0 11112 2 345566567899999999987653

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=98.88  E-value=8.5e-09  Score=102.31  Aligned_cols=59  Identities=17%  Similarity=0.186  Sum_probs=50.2

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA  318 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~  318 (423)
                      ++++++.|+|||+|.||+.++++|++.+|.|+|+|.++..-   +.+ ++.++.+||+.+++.
T Consensus         7 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~d~~~~~v~~~~~~---~~~-~~~~~~~~R~~m~~~   65 (352)
T 2qjt_B            7 YDISVFIGRFQPFHKGHLHNIIIALQNSKKVIINIGSCFNT---PNI-KNPFSFEQRKQMIES   65 (352)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHSEEEEEEEEEEESCC---CCS-SSCSCHHHHHHHHHH
T ss_pred             ccEEEEEEecCCCChHHHHHHHHHHHhCCcEEEEECCCCCC---ccc-CCCCCHHHHHHHHHH
Confidence            47899999999999999999999999999999999987532   222 456799999988865

>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A

Probab=98.81  E-value=1.9e-10  Score=111.40  Aligned_cols=128  Identities=20%  Similarity=0.194  Sum_probs=89.5

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCC---CCCCcHHHHHHHHhcCccccEEEecCCcc-c
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG---PPVLSMEERLALVSGLKWVDEVIANAPYA-I  140 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~---~pi~t~eER~~~l~~~~~VD~vi~~~p~~-~  140 (423)
                      -..|.+.|+   +|.||+.||++|++.++.++|.+.+++.-...+.   +.+.+.++|.++++++ +||.++. .+++ +
T Consensus        19 i~~VpTmG~---lH~GH~~Li~~A~~~a~~vVvsff~nP~qf~~~ed~~~yp~tle~d~~ll~~~-GvD~vf~-p~f~~m   93 (276)
T 1v8f_A           19 VGFVPTMGY---LHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEA-GVDLLFA-PGVEEM   93 (276)
T ss_dssp             EEEEEECSS---CCHHHHHHHHHHHHHCSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHT-TCSEEEC-CCHHHH
T ss_pred             ceEEEeCCC---ccHHHHHHHHHHHHhCCEEEEEEECCHHHhCCCcccCCCCcCHHHHHHHHHhC-CCCEEEe-CChHhC
Confidence            346889999   9999999999999999999999999886432221   4689999999999997 7999986 3331 1


Q ss_pred             c-HHHHHHHHhhcCccEEEEcC----------------------C-CCCCCCCCcHHHHHHhCCc-------EE--Eecc
Q 014487          141 T-EQFMNRLFNEHKIDYIIHGD----------------------D-PCLLPDGTDAYALAKKVGR-------YK--QIKR  187 (423)
Q Consensus       141 ~-~efl~~ll~~~~~d~VV~G~----------------------D-~~~g~~g~~~~~~lk~~g~-------~~--~v~r  187 (423)
                      + ++|...++...+++.+++|.                      | ++||.+..+....+++.++       ++  +.-+
T Consensus        94 ~p~~f~~~v~~~~~~~~vl~G~~RpghF~GV~TVv~kLf~iv~Pd~~~FG~kd~qq~~~l~~~~~dl~~~v~iv~~p~vr  173 (276)
T 1v8f_A           94 YPEGFATRVQVEGPLTALWEGAVRPGHFQGVATVVARLFLLVQPQRAYFGEKDYQQLLVVRRMVRDLGFPVEVVGVPTVR  173 (276)
T ss_dssp             SCTTCCEEEEECSHHHHSTHHHHSTTHHHHHHHHHHHHHHHHCCSEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCCB
T ss_pred             CCcCCeEEEEecCCcceEEecCCCCCeecceeehhhHhhcccCCCEEEECCCCCcCHHHHHHHHHHcCCeEEEEecCcEE
Confidence            1 12322111013345556666                      8 9999888888888877653       33  2223


Q ss_pred             C-CC--CCHHHHH
Q 014487          188 T-EG--VSSTDIV  197 (423)
Q Consensus       188 ~-~~--iSST~Ir  197 (423)
                      . .|  +|||.|+
T Consensus       174 ~~dGlaiSSrnir  186 (276)
T 1v8f_A          174 EEDGLALSSRNVY  186 (276)
T ss_dssp             CTTSCBCCGGGGG
T ss_pred             cCCCCEeEEeEEE
Confidence            3 33  8999886

>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*

Probab=98.73  E-value=2.9e-08  Score=96.54  Aligned_cols=72  Identities=14%  Similarity=0.166  Sum_probs=53.3

Q ss_pred             CCCeEEEEcCeeccCCHHHHHHHHHHHhcCC-----EEEEEEecChhhhhccCCCCCCCCHHHHHHHHH-hhcccCeeEE
Q 014487          254 PNARVVYIDGAFDLFHAGHVEILKKARQLGD-----FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVII  327 (423)
Q Consensus       254 ~~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd-----~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~Vd~Vvi  327 (423)
                      +..+++++.|+||++|.||+.++++|++.++     .++|++..-...+..|   .++++.++|+.+++ ++..++.+.+
T Consensus         6 ~~~~i~i~gGsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~~~~~K---~~l~s~~~R~~ml~~ai~~~~~~~v   82 (279)
T 1kqn_A            6 KTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKK---KGLIPAYHRVIMAELATKNSKWVEV   82 (279)
T ss_dssp             CEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGGGCC---TTCCCHHHHHHHHHHHTTTCSSEEE
T ss_pred             CCceEEEEEeeecHhhHHHHHHHHHHHHHhcccCCceEEEEEEcCCCCCccc---cCCCCHHHHHHHHHHHhcCCCcEEE
Confidence            3467899999999999999999999998764     3666553222222233   36889999998886 4678888877


Q ss_pred             c
Q 014487          328 G  328 (423)
Q Consensus       328 ~  328 (423)
                      .
T Consensus        83 ~   83 (279)
T 1kqn_A           83 D   83 (279)
T ss_dssp             C
T ss_pred             e
Confidence            5

>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*

Probab=98.67  E-value=1.7e-09  Score=105.07  Aligned_cols=109  Identities=17%  Similarity=0.219  Sum_probs=81.5

Q ss_pred             EEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCC---CCCCcHHHHHHHHhcCccccEEEecCCcc-cc-H
Q 014487           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG---PPVLSMEERLALVSGLKWVDEVIANAPYA-IT-E  142 (423)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~---~pi~t~eER~~~l~~~~~VD~vi~~~p~~-~~-~  142 (423)
                      |.+.|+   +|.||+.+|++|++.++.++|.+..+|.-...+.   +.+.+.+++.++++.+ +||.++. .++. ++ +
T Consensus        28 VpTmG~---lH~GH~~LI~~a~~~a~~vVvsffvnP~qf~~~ed~~~yprtle~d~~ll~~~-GvD~vf~-p~~~~myp~  102 (283)
T 3ag6_A           28 IPTMGA---LHDGHLTMVRESVSTNDITIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEV-GADIVFH-PAVEDMYPG  102 (283)
T ss_dssp             EEECSS---CCHHHHHHHHHHHTTSSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHH-TCSEEEC-CCHHHHSCS
T ss_pred             EECCcc---ccHHHHHHHHHHHHhCCEEEEEEeCChhhcCCccccccCCCCHHHHHHHHHhC-CCCEEEe-CCHHHCCCC
Confidence            458997   9999999999999999999999988885322221   4588999999999997 8999997 3321 11 1


Q ss_pred             HH--------HHH-HHhhcCcc-------------EEEEcCCCCCCCCCCcHHHHHHhCCc
Q 014487          143 QF--------MNR-LFNEHKID-------------YIIHGDDPCLLPDGTDAYALAKKVGR  181 (423)
Q Consensus       143 ef--------l~~-ll~~~~~d-------------~VV~G~D~~~g~~g~~~~~~lk~~g~  181 (423)
                      +|        +.+ +...++|.             .+|.|+|++||.+..+....+++.++
T Consensus       103 ~f~~~v~~~~l~~~L~G~~rp~hF~GV~TVV~KLf~iV~p~~~~FG~Kd~qql~~l~~m~~  163 (283)
T 3ag6_A          103 ELGIDVKVGPLADVLEGAKRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVK  163 (283)
T ss_dssp             SCSEEEEECGGGSSTHHHHSTTHHHHHHHHHHHHHHHHCCSEEEEEGGGHHHHHHHHHHHH
T ss_pred             CceEEEeccccchhhccCCCCCeecchhhHhhhhcEEecCceEEECCCCccCHHHHHHHHH
Confidence            23        211 22237888             89999999999988888778876553

>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*

Probab=98.61  E-value=1.1e-07  Score=90.90  Aligned_cols=71  Identities=14%  Similarity=0.119  Sum_probs=51.8

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCE----EEEEEecChhhhhccCCCCCCCCHHHHHHHHH-hhcccCeeEEc
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDF----LLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIG  328 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~----LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~Vd~Vvi~  328 (423)
                      ++++++.|+|||+|.||+.++++|++.++.    .+||+.-.......+.  .++++.++|+.+++ +++..+.+.+.
T Consensus         6 ~~i~i~~GsFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~~k--~~~~~~~~R~~m~~~ai~~~~~~~v~   81 (252)
T 1nup_A            6 PVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGK--KDLAASHHRVAMARLALQTSDWIRVD   81 (252)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCSS--SCCCCHHHHHHHHHHHGGGCSSEEEC
T ss_pred             ceEEEEEecCcHhhHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCcccC--CCCCCHHHHHHHHHHHhcCCCceEee
Confidence            578999999999999999999999988743    6665442222112221  36889999998875 57777777664

>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}

Probab=98.58  E-value=7.4e-08  Score=93.53  Aligned_cols=72  Identities=17%  Similarity=0.287  Sum_probs=57.6

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEE--ecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcC
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGI--YTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGA  329 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv--~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~  329 (423)
                      +++++++ |+||-+|.||+.+|++|++.+|.+||++  |.++.........+| .++++|+..+.++. ||.|++.+
T Consensus        21 g~~V~~v-gtfdgLH~GH~sLI~~A~~~ad~vVVSffvnP~qf~~~ed~~~yp-~tle~d~~lL~~~G-VD~vf~p~   94 (280)
T 2ejc_A           21 KKTIGFV-PTMGYLHEGHLSLVRRARAENDVVVVSIFVNPTQFGPNEDYERYP-RDFERDRKLLEKEN-VDCIFHPS   94 (280)
T ss_dssp             TCCEEEE-EECSCCCHHHHHHHHHHHHHSSEEEEEECCCGGGCCTTSCGGGSC-CCHHHHHHHHHTTT-CSEEECCC
T ss_pred             CCEEEEE-cCCccccHHHHHHHHHHHHhCCEEEEEEeCChHHhcCCcccccCC-CCHHHHHHHHHHCC-CCEEEeCC
Confidence            5678888 8999999999999999999999999999  555443322112244 58999999999998 99999854

>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...

Probab=98.47  E-value=1.1e-08  Score=100.14  Aligned_cols=112  Identities=16%  Similarity=0.186  Sum_probs=78.5

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHH-hcCeeEEEEecchhhhccCC---CCCCcHHHHHHHHhcCccccEEEecCCcc-cc
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKA-LGDELVVGVVSDEEIIANKG---PPVLSMEERLALVSGLKWVDEVIANAPYA-IT  141 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~-~~d~LiVgV~sd~~i~~~K~---~pi~t~eER~~~l~~~~~VD~vi~~~p~~-~~  141 (423)
                      +|.+..++..+|.||+.||++|++ .++.++|.+..+|.-...+.   ..+.+.++++++++.+ +||.++. .+++ +.
T Consensus        34 ~vg~VpTmG~LH~GH~sLI~~A~~~~a~~vVvSffvnP~qF~~~ed~~~yprtle~d~~lL~~~-GVD~vf~-p~~~~my  111 (301)
T 3cov_A           34 RVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAE-GVEIAFT-PTTAAMY  111 (301)
T ss_dssp             EEEEEEECSCCCHHHHHHHHHHHTSTTEEEEEEECCCGGGCCSSSHHHHSCCCHHHHHHHHHHT-TCCEEEC-CCHHHHC
T ss_pred             cEEEEecCCcccHHHHHHHHHHHHhcCCEEEEEEcCChhhcCCccccccCCCCHHHHHHHHHhC-CCCEEEe-CCHHHCC
Confidence            455556666699999999999999 99989999988885332222   4588999999999997 8999997 3321 11


Q ss_pred             -HHHHHHHHhhcCccEEEEcC-----------------------CCCCCCCCCcHHHHHHhCCc
Q 014487          142 -EQFMNRLFNEHKIDYIIHGD-----------------------DPCLLPDGTDAYALAKKVGR  181 (423)
Q Consensus       142 -~efl~~ll~~~~~d~VV~G~-----------------------D~~~g~~g~~~~~~lk~~g~  181 (423)
                       ++|...+.-. ++..+++|.                       |+.||.+..+....+++.++
T Consensus       112 P~~f~~~v~~~-~~~~vl~G~~RPghF~GV~TVV~KLfniv~P~~a~FG~Kd~qql~~lr~mv~  174 (301)
T 3cov_A          112 PDGLRTTVQPG-PLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVA  174 (301)
T ss_dssp             TTCSCSEEECC-GGGGSGGGSSCTTHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHH
T ss_pred             CCCceEEEecC-CcceeeecCCCCChhhhhhHHHHHHhhccCCCeEEECCCcccCHHHHHHHHH
Confidence             1232211111 345566777                       89999888887778876553

>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5

Probab=98.32  E-value=6.2e-06  Score=83.82  Aligned_cols=133  Identities=17%  Similarity=0.098  Sum_probs=85.9

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhc--CeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCc-cc---cEE-EecCCc
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK-WV---DEV-IANAPY  138 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~-~V---D~v-i~~~p~  138 (423)
                      ++|++.|+||++|.||..++++|.+..  |.|++-+.-.    +.| +--.+.+.|+++++.+- ..   +.+ +...|+
T Consensus       193 ~~VvafqTrNPiHrgH~~l~~~Ale~~~~D~vll~P~~g----~~K-~~di~~~~R~~~~~~~~~~~~p~~~v~l~~~p~  267 (396)
T 1jhd_A          193 SKVVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLG----KLK-KGDIPAPVRDAAIRTMAEVYFPPNTVMVTGYGF  267 (396)
T ss_dssp             SSEEEEEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEEC----CCC-TTCCCHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             ceEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEECCC----CCC-CCCCCHHHHHHHHHHHHHhcCCCcceEEEechH
Confidence            468889999999999999999999987  7666555432    223 44678999999988631 11   111 111223


Q ss_pred             cc-----cHHHHHHHH-hhcCccEEEEcCCCC---CCCCCCcHHHHHHhC-------CcEEEecc---------------
Q 014487          139 AI-----TEQFMNRLF-NEHKIDYIIHGDDPC---LLPDGTDAYALAKKV-------GRYKQIKR---------------  187 (423)
Q Consensus       139 ~~-----~~efl~~ll-~~~~~d~VV~G~D~~---~g~~g~~~~~~lk~~-------g~~~~v~r---------------  187 (423)
                      .+     ++..+..++ +.++|.++++|.|..   ..+++.+..+.++..       .+++.+++               
T Consensus       268 ~m~~aGPreailhaiirkn~G~t~fIVGrDhag~~~~y~~~~aq~il~~~~~~~~l~i~iv~~~~~~Y~~~~~~~~~~~~  347 (396)
T 1jhd_A          268 DMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVGDYYGAFDAQTIFDDEVPEGAMEIEIFRADHTAYSKKLNKIVMMRD  347 (396)
T ss_dssp             CCCCCTHHHHHHHHHHHHHTTCSEEEECTTTTCCTTCSCTTHHHHHHHHTSCTTSCSCEEEECCCEEEETTTTEEEEGGG
T ss_pred             HhhcCCchHHHHHHHHHHcCCCcEEEECCCCCCccccCCcchHHHHHHhcccccccceeEEecccceecCCCCeEEEccc
Confidence            22     133344444 468999999999963   335566555566642       23333322               


Q ss_pred             --------CCCCCHHHHHHHHHhc
Q 014487          188 --------TEGVSSTDIVGRILSS  203 (423)
Q Consensus       188 --------~~~iSST~Ir~rI~~~  203 (423)
                              ...||||+||+++.++
T Consensus       348 ~p~~~~~~~~~ISgT~IR~~L~~G  371 (396)
T 1jhd_A          348 VPDHTKEDFVLLSGTKVREMLGQG  371 (396)
T ss_dssp             CTTCCGGGEECCCHHHHHHHHHTT
T ss_pred             cCcccCCCccccCHHHHHHHHHCC
Confidence                    0149999999999876

>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5

Probab=98.26  E-value=5e-06  Score=83.19  Aligned_cols=134  Identities=16%  Similarity=0.140  Sum_probs=86.0

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCc-cc---cEEE-ecCCccc
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK-WV---DEVI-ANAPYAI  140 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~-~V---D~vi-~~~p~~~  140 (423)
                      ++|++.|+||++|.||..+.++|.+.+|.|++-+.--    +.| +-..+.+.|+++++.+- ..   +.++ ...|+.+
T Consensus       156 ~~VvafqTrNPiHrgH~~l~~~ale~~d~vll~P~~g----~~K-~~d~~~~~R~~~~~~~i~~~~p~~~~~l~~~p~~m  230 (349)
T 1v47_A          156 RKVVAFQTRNAPHRAHEYLIRLGLELADGVLVHPILG----AKK-PDDFPTEVIVEAYQALIRDFLPQERVAFFGLATPM  230 (349)
T ss_dssp             CSEEEEEESSCCCHHHHHHHHHHHHHSSEEEEEEBCS----CCC-TTSCCHHHHHHHHHHHHHHHSCGGGEEECCBCSCC
T ss_pred             CeEEEeecCCCCchHHHHHHHHHHHhCCcEEEEECCC----CCC-CCCCCHHHHHHHHHHHHhhcCCCcceEEEechHHh
Confidence            4678899999999999999999999999777655532    223 45689999999998631 11   1122 2233333


Q ss_pred             c-----HHHHHHHH-hhcCccEEEEcCCCC---CCCCCCcHHHHHHhCC----cEEEecc--------------------
Q 014487          141 T-----EQFMNRLF-NEHKIDYIIHGDDPC---LLPDGTDAYALAKKVG----RYKQIKR--------------------  187 (423)
Q Consensus       141 ~-----~efl~~ll-~~~~~d~VV~G~D~~---~g~~g~~~~~~lk~~g----~~~~v~r--------------------  187 (423)
                      .     +..+..++ +.++|.++++|.|..   ..+++.+..+.++...    ++..+++                    
T Consensus       231 ~~aGPreailhaiirkn~G~t~fIVGrDhag~~~~y~~~~aq~i~~~~~~l~i~~v~~~~~~Y~~~~~~~~~~~~~p~~~  310 (349)
T 1v47_A          231 RYAGPKEAVFHALVRKNFGATHFLVGRDHAGVGDFYDPYAAHRIFDRLPPLGIEIVKVGAVFHCPLCGGIASERTCPEGH  310 (349)
T ss_dssp             CCCTHHHHHHHHHHHHHTTCSEEEECTTTTCSTTCSCTTHHHHGGGGSCCCSSEEEECCCEEEETTTTEEEETTTSCGGG
T ss_pred             hcCCcHHHHHHHHHHHcCCCcEEEECcCCCCcccccCcccHHHHHHhhhhcCceEEeccccEEcccCCceEEccccCccC
Confidence            1     34455544 468999999999963   2234444444444431    2222111                    


Q ss_pred             ---CCCCCHHHHHHHHHhcc
Q 014487          188 ---TEGVSSTDIVGRILSSM  204 (423)
Q Consensus       188 ---~~~iSST~Ir~rI~~~~  204 (423)
                         .-.||||+||+++.++.
T Consensus       311 ~~~~~~ISgT~iR~~L~~G~  330 (349)
T 1v47_A          311 REKRTAISMTKVRALLREGK  330 (349)
T ss_dssp             GGGCEECCHHHHHHHHHTTC
T ss_pred             CCcccccCHHHHHHHHHCcC
Confidence               01389999999998763

>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}

Probab=98.25  E-value=3.8e-06  Score=84.22  Aligned_cols=90  Identities=16%  Similarity=0.277  Sum_probs=69.2

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChh--hhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCC-
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQI--VSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW-  331 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~--v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~-  331 (423)
                      ++++|.+-|.||+||.||..+|++|++ .+ ++++|.+-..  +.  +|. ..+++..+|+.+++.+ .||.|+.-+.. 
T Consensus        51 ~~~~v~~lG~FDg~H~GHq~lI~~a~~-~~-~~~~Vms~~~~~vq--rg~-~~l~~~~~R~~~~~~~-GvD~vielpF~~  124 (357)
T 3gmi_A           51 KDKIVCDFTEYNPLHKGHKYALEKGKE-HG-IFISVLPGPLERSG--RGI-PYFLNRYIRAEMAIRA-GADIVVEGPPMG  124 (357)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHHHT-SS-EEEEEECCTTSBCT--TSS-BCSSCHHHHHHHHHHH-TCSEEEECCCGG
T ss_pred             CCCEEEEEEecCccCHHHHHHHHHHHH-cC-CeEEEEcCchHHhc--CCC-CcCCCHHHHHHHHHHC-CCCEEEEcCchh
Confidence            457899999999999999999999999 55 6666665433  43  343 5789999999999998 79998885431 


Q ss_pred             -CchHHHH-------hhcCccEEEecC
Q 014487          332 -EVTKDMI-------TTFNICLVVHGT  350 (423)
Q Consensus       332 -~~~~~~i-------~~~~~d~vv~G~  350 (423)
                       ..+.+++       .+++++.+|.|.
T Consensus       125 ~~s~~~Fv~~~v~ll~~l~~~~iv~G~  151 (357)
T 3gmi_A          125 IMGSGQYMRCLIKMFYSLGAEIIPRGY  151 (357)
T ss_dssp             GSCHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             hCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence             2334454       458999999997

>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0

Probab=97.51  E-value=0.00014  Score=70.37  Aligned_cols=68  Identities=19%  Similarity=0.225  Sum_probs=56.8

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhc-cCC--CCCCcHHHHHHHHhcCccccEEEe
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIA-NKG--PPVLSMEERLALVSGLKWVDEVIA  134 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~-~K~--~pi~t~eER~~~l~~~~~VD~vi~  134 (423)
                      ++|-+..+..++|.||+.|+++|++.++.++|.+..++.-.. ...  +.+.+.++++++++.. +||.|+.
T Consensus        22 ~~ig~VPTMG~LH~GH~sLi~~A~~~~d~vVvSifvnP~qf~~~ed~~~yprt~e~d~~ll~~~-GvD~vF~   92 (283)
T 3uk2_A           22 NRTAFVPTMGNLHEGHLSLMRLARQHGDPVVASIFVNRLQFGPNEDFDKYPRTLQEDIEKLQKE-NVYVLFA   92 (283)
T ss_dssp             SSCEEEEECSSCCHHHHHHHHHHHTTCSSEEEEECCCGGGSCTTSCTTTSCCCHHHHHHHHHTT-TCSEEEC
T ss_pred             CeEEEECCCCcccHHHHHHHHHHHHhCCEEEEEEcCCHHHcCCcccccccCCCHHHHHHHHHHc-CCCEEEe
Confidence            357888999999999999999999999999999888875322 222  5688999999999997 8998875

>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A

Probab=96.87  E-value=0.0028  Score=61.22  Aligned_cols=68  Identities=18%  Similarity=0.260  Sum_probs=52.9

Q ss_pred             EEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccC-CCCCCCCHHHHHHHHHhhcccCeeEEcC
Q 014487          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRG-SYHPIMHLHERSLSVLACRYVDEVIIGA  329 (423)
Q Consensus       258 iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg-~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~  329 (423)
                      .|.+-|.   +|.||..++++|++.+|.++|.+..+..-.-... ..+...++++|...+.++. ||.|+..+
T Consensus        21 ~VpTmG~---lH~GH~~Li~~A~~~a~~vVvsff~nP~qf~~~ed~~~yp~tle~d~~ll~~~G-vD~vf~p~   89 (276)
T 1v8f_A           21 FVPTMGY---LHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEAG-VDLLFAPG   89 (276)
T ss_dssp             EEEECSS---CCHHHHHHHHHHHHHCSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHTT-CSEEECCC
T ss_pred             EEEeCCC---ccHHHHHHHHHHHHhCCEEEEEEECCHHHhCCCcccCCCCcCHHHHHHHHHhCC-CCEEEeCC
Confidence            3557777   9999999999999999999999998864321111 1135789999999999986 99988743

>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}

Probab=96.63  E-value=0.0052  Score=60.09  Aligned_cols=66  Identities=23%  Similarity=0.292  Sum_probs=51.9

Q ss_pred             CeEEE--EecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhh-ccCC--CCCCcHHHHHHHHhcCccccEEEe
Q 014487           65 RVRVY--MDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (423)
Q Consensus        65 ~~~V~--~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~-~~K~--~pi~t~eER~~~l~~~~~VD~vi~  134 (423)
                      .++++  +.|   .+|.||+.|+++|++.+|.++|.+..+|.=. +...  ...-+.++.+++++.. +||.|+.
T Consensus        43 ~~IgfVPTMG---~LH~GHlsLi~~A~~~~d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~-GvD~vF~  113 (314)
T 3inn_A           43 KKIGFVPTMG---YLHKGHLELVRRARVENDVTLVSIFVNPLQFGANEDLGRYPRDLERDAGLLHDA-QVDYLFA  113 (314)
T ss_dssp             CCEEEEEECS---SCCHHHHHHHHHHHHHCSEEEEEECCCGGGSCTTSSTTTCCCCHHHHHHHHHHT-TCSEEEC
T ss_pred             CeEEEEcCCC---ccCHHHHHHHHHHHHhCCEEEEEECCChhhcCCCccccccCCCHHHHHHHHHhC-CCCEEEC
Confidence            34555  667   5999999999999999999999998887522 2222  4567889999999987 8998875

>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*

Probab=96.45  E-value=0.011  Score=57.33  Aligned_cols=71  Identities=15%  Similarity=0.222  Sum_probs=52.8

Q ss_pred             CCeEEE--EcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccC-CCCCCCCHHHHHHHHHhhcccCeeEEcC
Q 014487          255 NARVVY--IDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRG-SYHPIMHLHERSLSVLACRYVDEVIIGA  329 (423)
Q Consensus       255 ~~~iv~--~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg-~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~  329 (423)
                      +++|++  +-|.   +|.||..++++|++.+|.++|.+..+..-.-... ......+++++...+.++. ||.|+..+
T Consensus        22 g~~I~fVpTmG~---lH~GH~~LI~~a~~~a~~vVvsffvnP~qf~~~ed~~~yprtle~d~~ll~~~G-vD~vf~p~   95 (283)
T 3ag6_A           22 GTTIGFIPTMGA---LHDGHLTMVRESVSTNDITIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEVG-ADIVFHPA   95 (283)
T ss_dssp             TCCEEEEEECSS---CCHHHHHHHHHHHTTSSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHHT-CSEEECCC
T ss_pred             CCcEEEEECCcc---ccHHHHHHHHHHHHhCCEEEEEEeCChhhcCCccccccCCCCHHHHHHHHHhCC-CCEEEeCC
Confidence            456766  7775   9999999999999999999999987653211111 0123678999999988885 99888743

>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*

Probab=96.17  E-value=0.0055  Score=59.26  Aligned_cols=65  Identities=22%  Similarity=0.362  Sum_probs=45.2

Q ss_pred             CCCeEEE--EcCeeccCCHHHHHHHHHHHhcCCEEEEEEecCh-------hhhhccCCCCCCCCHHHHHHHHHhhcccCe
Q 014487          254 PNARVVY--IDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ-------IVSEHRGSYHPIMHLHERSLSVLACRYVDE  324 (423)
Q Consensus       254 ~~~~iv~--~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~-------~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~  324 (423)
                      .+++|++  +-|+   +|.||++++++|++.||.+||+|.-+.       +..+     +|= ++++=...+.+. .||.
T Consensus        23 ~g~~IgfVPTMG~---LH~GHlsLv~~Ar~~~d~vVVSIFVNP~QF~~~EDl~~-----YPR-tle~D~~~l~~~-gvd~   92 (287)
T 3q12_A           23 EGKRIALVPTMGN---LHEGHMTLVDEAKTRADVVVVTIFVNPLQFERPDDLAH-----YPR-TLQEDCEKLTRH-GADL   92 (287)
T ss_dssp             TTCCEEEEEECSS---CCHHHHHHHHHHHTTSSEEEEEECCCGGGCSSHHHHHH-----SCC-CHHHHHHHHHHH-TCSE
T ss_pred             cCCeEEEEcCCCc---ccHHHHHHHHHHHHhCCEEEEEeccCcccCCCcchhhc-----CCC-CHHHHHHHHHHC-CCCE
Confidence            3578888  7786   999999999999999999999998553       2222     232 344434444444 5886


Q ss_pred             eEEc
Q 014487          325 VIIG  328 (423)
Q Consensus       325 Vvi~  328 (423)
                      |+..
T Consensus        93 vF~P   96 (287)
T 3q12_A           93 VFAP   96 (287)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            6653

>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...

Probab=95.86  E-value=0.02  Score=55.81  Aligned_cols=72  Identities=17%  Similarity=0.283  Sum_probs=50.0

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHh-cCCEEEEEEecChhhhhccCC-CCCCCCHHHHHHHHHhhcccCeeEEcC
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQ-LGDFLLVGIYTDQIVSEHRGS-YHPIMHLHERSLSVLACRYVDEVIIGA  329 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~-~gd~LiVgv~~D~~v~~~Kg~-~~pi~~~~ER~~~v~~~~~Vd~Vvi~~  329 (423)
                      .+++++ .++.-+|.||..++++|++ .+|.+||.+..+..-.-.... .....+++++...+.++. ||.|+..+
T Consensus        33 ~~vg~V-pTmG~LH~GH~sLI~~A~~~~a~~vVvSffvnP~qF~~~ed~~~yprtle~d~~lL~~~G-VD~vf~p~  106 (301)
T 3cov_A           33 RRVMLV-PTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAEG-VEIAFTPT  106 (301)
T ss_dssp             CEEEEE-EECSCCCHHHHHHHHHHHTSTTEEEEEEECCCGGGCCSSSHHHHSCCCHHHHHHHHHHTT-CCEEECCC
T ss_pred             CcEEEE-ecCCcccHHHHHHHHHHHHhcCCEEEEEEcCChhhcCCccccccCCCCHHHHHHHHHhCC-CCEEEeCC
Confidence            444432 3334499999999999999 999999999876532111000 023568999999988886 99888743

>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*

Probab=95.83  E-value=0.0098  Score=57.51  Aligned_cols=66  Identities=20%  Similarity=0.188  Sum_probs=47.9

Q ss_pred             CeEEE--EecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhh-ccCC--CCCCcHHHHHHHHhcCccccEEEe
Q 014487           65 RVRVY--MDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (423)
Q Consensus        65 ~~~V~--~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~-~~K~--~pi~t~eER~~~l~~~~~VD~vi~  134 (423)
                      .++++  +.|+   +|-||+.|+++|++.+|.++|.+.-+|.=. +...  ...=+.++=+++++.. +||.|+.
T Consensus        25 ~~IgfVPTMG~---LH~GHlsLv~~Ar~~~d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~~l~~~-gvd~vF~   95 (287)
T 3q12_A           25 KRIALVPTMGN---LHEGHMTLVDEAKTRADVVVVTIFVNPLQFERPDDLAHYPRTLQEDCEKLTRH-GADLVFA   95 (287)
T ss_dssp             CCEEEEEECSS---CCHHHHHHHHHHHTTSSEEEEEECCCGGGCSSHHHHHHSCCCHHHHHHHHHHH-TCSEEEC
T ss_pred             CeEEEEcCCCc---ccHHHHHHHHHHHHhCCEEEEEeccCcccCCCcchhhcCCCCHHHHHHHHHHC-CCCEEEC
Confidence            34666  7886   999999999999999999999988776411 1100  2234567777778775 8998875

>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}

Probab=95.36  E-value=0.045  Score=53.49  Aligned_cols=70  Identities=21%  Similarity=0.323  Sum_probs=48.8

Q ss_pred             CCCeEEE--EcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhcc--CCCCCCCCHHHHHHHHHhhcccCeeEEc
Q 014487          254 PNARVVY--IDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHR--GSYHPIMHLHERSLSVLACRYVDEVIIG  328 (423)
Q Consensus       254 ~~~~iv~--~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~K--g~~~pi~~~~ER~~~v~~~~~Vd~Vvi~  328 (423)
                      .+++|++  +-|.   +|.||+.++++|++.+|.+||.|.-+..=....  -..+|= ++++....+.+. .||.|+..
T Consensus        41 ~g~~IgfVPTMG~---LH~GHlsLi~~A~~~~d~vVVSIFVNP~QF~~~EDl~~YPR-tle~D~~ll~~~-GvD~vF~P  114 (314)
T 3inn_A           41 QGKKIGFVPTMGY---LHKGHLELVRRARVENDVTLVSIFVNPLQFGANEDLGRYPR-DLERDAGLLHDA-QVDYLFAP  114 (314)
T ss_dssp             TTCCEEEEEECSS---CCHHHHHHHHHHHHHCSEEEEEECCCGGGSCTTSSTTTCCC-CHHHHHHHHHHT-TCSEEECC
T ss_pred             cCCeEEEEcCCCc---cCHHHHHHHHHHHHhCCEEEEEECCChhhcCCCccccccCC-CHHHHHHHHHhC-CCCEEECC
Confidence            3578888  6785   999999999999999999999998654311000  011343 677777777665 48876553

>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5

Probab=94.84  E-value=0.4  Score=48.38  Aligned_cols=94  Identities=17%  Similarity=0.170  Sum_probs=57.2

Q ss_pred             eEEEEecccCcCcHHHHHHH-HHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCc---cccEEEe-cCCccc
Q 014487           66 VRVYMDGCFDLMHYGHANAL-RQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---WVDEVIA-NAPYAI  140 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL-~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~---~VD~vi~-~~p~~~  140 (423)
                      ++|++..+++++|.||..++ +.|.+.++.|++  ++  .+-..| +-=++.+-|++..+.+-   --+.++. ..|+.+
T Consensus       188 ~~VvafqtrNP~HraH~e~~~r~a~e~~~~lll--hP--lvG~tK-~~Dip~~vR~~~~~~~l~~yp~~~v~l~~~p~~m  262 (395)
T 1r6x_A          188 DRVVAFQTRNPMHRAHRELTVRAAREANAKVLI--HP--VVGLTK-PGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLAM  262 (395)
T ss_dssp             CCEEEECCSSCCCHHHHHHHHHHHHHTTCEEEE--CC--BCSBCC-TTCCCHHHHHHHHHHHGGGSSTTCEEECCBCCBC
T ss_pred             CcEEEeccCCCcchhhHHHHHHHHHHcCCcEEE--EE--CCCCCC-CCCCCHHHHHHHHHHHHHhCCCccEEEEecchhh
Confidence            46888999999999996555 455555664443  32  122223 23468899988877632   1223332 223322


Q ss_pred             c-----HHHHHHHH-hhcCccEEEEcCCCC
Q 014487          141 T-----EQFMNRLF-NEHKIDYIIHGDDPC  164 (423)
Q Consensus       141 ~-----~efl~~ll-~~~~~d~VV~G~D~~  164 (423)
                      -     +..+..++ +.|+|..+++|-|..
T Consensus       263 ryAGPrEai~HAiiRkN~GcthfIVGRDhA  292 (395)
T 1r6x_A          263 RMSGDREAVWHAIIRKNYGASHFIVGRDHA  292 (395)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred             hhcCcHHHHHHHHHHHHcCCceEEECCCCC
Confidence            1     34445544 569999999999974

>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*

Probab=94.33  E-value=0.088  Score=50.80  Aligned_cols=60  Identities=22%  Similarity=0.318  Sum_probs=44.7

Q ss_pred             EecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhh-hccCC--CCCCcHHHHHHHHhcCccccEEEe
Q 014487           70 MDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI-IANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (423)
Q Consensus        70 ~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i-~~~K~--~pi~t~eER~~~l~~~~~VD~vi~  134 (423)
                      +.|   .+|-||+.|+++|++ +|.++|.+.-+|.= .+...  ...=+.++=+++++.. +||.|+.
T Consensus        32 TMG---aLH~GHlsLv~~Ar~-~d~VVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~-gvD~vF~   94 (285)
T 3mxt_A           32 TMG---FLHDGHLSLVKHAKT-QDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDN-GVDMVFI   94 (285)
T ss_dssp             ECS---SCCHHHHHHHHHHTT-SSEEEEEECCCGGGCCTTSCTTTSCCCHHHHHHHHHHT-TCSEEEC
T ss_pred             CCC---cccHHHHHHHHHHHh-CCEEEEEeccCccccCCchhhhcCCCCHHHHHHHHHHC-CCCEEEC
Confidence            556   499999999999999 99999998877742 11111  3344677777888876 8998875

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=94.28  E-value=0.45  Score=49.64  Aligned_cols=94  Identities=18%  Similarity=0.169  Sum_probs=58.5

Q ss_pred             eEEEEecccCcCcHHHHHHH-HHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCc---cccEEEe-cCCccc
Q 014487           66 VRVYMDGCFDLMHYGHANAL-RQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---WVDEVIA-NAPYAI  140 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL-~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~---~VD~vi~-~~p~~~  140 (423)
                      ++|++..+++++|.||..++ +.|.+.++.|++-+.-    -..| +-=.+.+-|++..+.+-   --+.++. ..|+.+
T Consensus       189 ~~v~afqtrnP~HraH~e~~~~~a~e~~~~lll~pl~----g~~k-~~di~~~~r~~~~~~~~~~yp~~~~~l~~~p~~m  263 (511)
T 1g8f_A          189 DRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPVV----GLTK-PGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLAM  263 (511)
T ss_dssp             CCEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEEEBC----SBCS-TTCCCHHHHHHHHHHHGGGSCTTSEEECCBCCBC
T ss_pred             CcEEEEecCCCCchHHHHHHHHHHHHcCCcEEEEECC----CCCC-CCCCCHHHHHHHHHHHHHhCCcccEEEEecchhh
Confidence            46888999999999996554 5566657755543332    1223 23468899988877642   1122332 234432


Q ss_pred             c-----HHHHHHHH-hhcCccEEEEcCCCC
Q 014487          141 T-----EQFMNRLF-NEHKIDYIIHGDDPC  164 (423)
Q Consensus       141 ~-----~efl~~ll-~~~~~d~VV~G~D~~  164 (423)
                      -     +..+..++ +.|+|.++++|-|..
T Consensus       264 ~yaGprea~~hai~r~n~G~th~IvGrdhA  293 (511)
T 1g8f_A          264 RMSGDREAVWHAIIRKNYGASHFIVGRDHA  293 (511)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCSEEECCTTTT
T ss_pred             hccCcHHHHHHHHHHHhCCCceEEeCCCCC
Confidence            1     34445544 569999999999974

>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0

Probab=94.13  E-value=0.12  Score=49.91  Aligned_cols=72  Identities=18%  Similarity=0.261  Sum_probs=51.9

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhc-cCCCCCCCCHHHHHHHHHhhcccCeeEEc
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH-RGSYHPIMHLHERSLSVLACRYVDEVIIG  328 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~-Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~  328 (423)
                      +++|++++ +..-+|.||..++++|++.+|.++|.+.-+..-... ..-.+...+++++...+.++ .||.|+..
T Consensus        21 g~~ig~VP-TMG~LH~GH~sLi~~A~~~~d~vVvSifvnP~qf~~~ed~~~yprt~e~d~~ll~~~-GvD~vF~P   93 (283)
T 3uk2_A           21 QNRTAFVP-TMGNLHEGHLSLMRLARQHGDPVVASIFVNRLQFGPNEDFDKYPRTLQEDIEKLQKE-NVYVLFAP   93 (283)
T ss_dssp             CSSCEEEE-ECSSCCHHHHHHHHHHHTTCSSEEEEECCCGGGSCTTSCTTTSCCCHHHHHHHHHTT-TCSEEECC
T ss_pred             CCeEEEEC-CCCcccHHHHHHHHHHHHhCCEEEEEEcCCHHHcCCcccccccCCCHHHHHHHHHHc-CCCEEEeC
Confidence            45666664 777899999999999999999999999766542110 00013456888888888776 48877664

>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*

Probab=94.09  E-value=0.13  Score=49.56  Aligned_cols=68  Identities=25%  Similarity=0.360  Sum_probs=43.5

Q ss_pred             CCCeEEEEc--CeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccC---CCCCCCCHHHHHHHHHhhcccCeeEEc
Q 014487          254 PNARVVYID--GAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRG---SYHPIMHLHERSLSVLACRYVDEVIIG  328 (423)
Q Consensus       254 ~~~~iv~~~--G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg---~~~pi~~~~ER~~~v~~~~~Vd~Vvi~  328 (423)
                      .+++|++++  |.   +|.||++++++|++ +|.+||.|.-+..=.. .+   ..+|= ++++=...+.+. .||.|+..
T Consensus        23 ~g~~Ig~VPTMGa---LH~GHlsLv~~Ar~-~d~VVVSIFVNP~QF~-~~EDl~~YPR-tle~D~~ll~~~-gvD~vF~P   95 (285)
T 3mxt_A           23 HQLSIGYVPTMGF---LHDGHLSLVKHAKT-QDKVIVSIFVNPMQFG-PNEDFSSYPR-DLERDIKMCQDN-GVDMVFIP   95 (285)
T ss_dssp             TTCCEEEEEECSS---CCHHHHHHHHHHTT-SSEEEEEECCCGGGCC-TTSCTTTSCC-CHHHHHHHHHHT-TCSEEECC
T ss_pred             cCCeEEEEcCCCc---ccHHHHHHHHHHHh-CCEEEEEeccCccccC-CchhhhcCCC-CHHHHHHHHHHC-CCCEEECC
Confidence            356777744  65   99999999999999 9999999975532100 00   01343 444444545444 58866653

>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*

Probab=93.40  E-value=0.12  Score=49.25  Aligned_cols=67  Identities=15%  Similarity=0.289  Sum_probs=47.2

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhh-ccCC--CCCCcHHHHHHHHhcCccccEEEe
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~-~~K~--~pi~t~eER~~~l~~~~~VD~vi~  134 (423)
                      +|-+.-+--.+|-||+.|+++|++.+|.++|.+.-+|.=. +...  ...=+.++=+++++.. +||.|+.
T Consensus        25 ~ig~VPTMGaLH~GHlsLv~~Ar~~~d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~-gvD~vF~   94 (264)
T 3n8h_A           25 KIGFVPTMGALHNGHISLIKKAKSENDVVIVSIFVNPTQFNNPNDYQTYPNQLQQDIQILASL-DVDVLFN   94 (264)
T ss_dssp             CEEEEEECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGCSCHHHHHHSCCCHHHHHHHHHHT-TCSEEEC
T ss_pred             cEEEECCCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCcchhhcCCCCHHHHHHHHHHC-CCCEEEC
Confidence            4555556668999999999999999999999988776411 1000  1233566667777775 8887775

>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*

Probab=92.27  E-value=0.099  Score=49.82  Aligned_cols=68  Identities=19%  Similarity=0.353  Sum_probs=44.7

Q ss_pred             CCCCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecCh-------hhhhccCCCCCCCCHHHHHHHHHhhcccCee
Q 014487          253 GPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ-------IVSEHRGSYHPIMHLHERSLSVLACRYVDEV  325 (423)
Q Consensus       253 ~~~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~-------~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~V  325 (423)
                      ..+++|++++ +-=-+|.||++++++|++.+|.+||.|.-+.       +..+     +|= ++++=...+.+. .||.|
T Consensus        21 ~~g~~ig~VP-TMGaLH~GHlsLv~~Ar~~~d~vVVSIFVNP~QF~~~EDl~~-----YPR-tle~D~~ll~~~-gvD~v   92 (264)
T 3n8h_A           21 IKQQKIGFVP-TMGALHNGHISLIKKAKSENDVVIVSIFVNPTQFNNPNDYQT-----YPN-QLQQDIQILASL-DVDVL   92 (264)
T ss_dssp             CTTSCEEEEE-ECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGCSCHHHHHH-----SCC-CHHHHHHHHHHT-TCSEE
T ss_pred             hCCCcEEEEC-CCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCcchhhc-----CCC-CHHHHHHHHHHC-CCCEE
Confidence            3456777766 2226899999999999999999999998543       2222     232 344334444443 58866


Q ss_pred             EEc
Q 014487          326 IIG  328 (423)
Q Consensus       326 vi~  328 (423)
                      +..
T Consensus        93 F~P   95 (264)
T 3n8h_A           93 FNP   95 (264)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            653

>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5

Probab=92.13  E-value=0.23  Score=49.34  Aligned_cols=90  Identities=14%  Similarity=0.049  Sum_probs=58.7

Q ss_pred             eEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhh-ccc-Ce--eEEc-CCC
Q 014487          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYV-DE--VIIG-APW  331 (423)
Q Consensus       257 ~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~-~~V-d~--Vvi~-~p~  331 (423)
                      +.|+.-|+|||+|.||..+.++|.+.+|.|++--.-.    ..|   .--.+.+-|+.+++.+ +.. +.  |++. .|.
T Consensus       156 ~~VvafqTrNPiHrgH~~l~~~ale~~d~vll~P~~g----~~K---~~d~~~~~R~~~~~~~i~~~~p~~~~~l~~~p~  228 (349)
T 1v47_A          156 RKVVAFQTRNAPHRAHEYLIRLGLELADGVLVHPILG----AKK---PDDFPTEVIVEAYQALIRDFLPQERVAFFGLAT  228 (349)
T ss_dssp             CSEEEEEESSCCCHHHHHHHHHHHHHSSEEEEEEBCS----CCC---TTSCCHHHHHHHHHHHHHHHSCGGGEEECCBCS
T ss_pred             CeEEEeecCCCCchHHHHHHHHHHHhCCcEEEEECCC----CCC---CCCCCHHHHHHHHHHHHhhcCCCcceEEEechH
Confidence            3455689999999999999999999999877654422    223   2347999999888764 322 32  4431 121


Q ss_pred             C-----chHH----HH-hhcCccEEEecCCcC
Q 014487          332 E-----VTKD----MI-TTFNICLVVHGTVSE  353 (423)
Q Consensus       332 ~-----~~~~----~i-~~~~~d~vv~G~d~~  353 (423)
                      .     ....    ++ +.+++..++-|.|..
T Consensus       229 ~m~~aGPreailhaiirkn~G~t~fIVGrDha  260 (349)
T 1v47_A          229 PMRYAGPKEAVFHALVRKNFGATHFLVGRDHA  260 (349)
T ss_dssp             CCCCCTHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred             HhhcCCcHHHHHHHHHHHcCCCcEEEECcCCC
Confidence            1     1111    12 335888999998864

>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5

Probab=91.89  E-value=0.2  Score=50.69  Aligned_cols=90  Identities=12%  Similarity=0.094  Sum_probs=56.9

Q ss_pred             eEEEEcCeeccCCHHHHHHHHHHHhcC--CEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhh-ccc-C--eeEE---
Q 014487          257 RVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYV-D--EVII---  327 (423)
Q Consensus       257 ~iv~~~G~FDl~H~GHi~~L~~A~~~g--d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~-~~V-d--~Vvi---  327 (423)
                      +.|+..|+|||+|.||..+.+.|.+..  |.|++--.-.    ..|   .--.+.+.|+.+++.+ +.. +  .|++   
T Consensus       193 ~~VvafqTrNPiHrgH~~l~~~Ale~~~~D~vll~P~~g----~~K---~~di~~~~R~~~~~~~~~~~~p~~~v~l~~~  265 (396)
T 1jhd_A          193 SKVVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLG----KLK---KGDIPAPVRDAAIRTMAEVYFPPNTVMVTGY  265 (396)
T ss_dssp             SSEEEEEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEEC----CCC---TTCCCHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ceEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEECCC----CCC---CCCCCHHHHHHHHHHHHHhcCCCcceEEEec
Confidence            446669999999999999999999877  7665443322    123   1347899999887664 322 2  2332   


Q ss_pred             cCCC---CchHHH----H-hhcCccEEEecCCcC
Q 014487          328 GAPW---EVTKDM----I-TTFNICLVVHGTVSE  353 (423)
Q Consensus       328 ~~p~---~~~~~~----i-~~~~~d~vv~G~d~~  353 (423)
                      ..+.   ..+..+    + +.+++..++-|.|..
T Consensus       266 p~~m~~aGPreailhaiirkn~G~t~fIVGrDha  299 (396)
T 1jhd_A          266 GFDMLYAGPREAVLHAYFRQNMGATHFIIGRDHA  299 (396)
T ss_dssp             ECCCCCCTHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred             hHHhhcCCchHHHHHHHHHHcCCCcEEEECCCCC
Confidence            1111   122221    2 335888999998874

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=90.11  E-value=0.88  Score=48.05  Aligned_cols=94  Identities=18%  Similarity=0.108  Sum_probs=58.5

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHh-cCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCc---cccEEEe-cCCcc-
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKAL-GDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---WVDEVIA-NAPYA-  139 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~-~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~---~VD~vi~-~~p~~-  139 (423)
                      ++|++.=+++++|.||..++++|... ++.|+|-+.-    -..| +-=.+.+-|++.++.+-   --+.++. ..|.. 
T Consensus       191 ~~v~afqtrnP~Hr~H~~l~~~a~~~~~~~llv~pl~----g~~k-~~di~~~~R~~~~~~~~~~~p~~~v~l~~~p~~m  265 (573)
T 1m8p_A          191 SRVVAFQTRNPMHRAHRELTVRAARSRQANVLIHPVV----GLTK-PGDIDHFTRVRAYQALLPRYPNGMAVLGLLGLAM  265 (573)
T ss_dssp             CSEEEECCSSCCCHHHHHHHHHHHHHTTCEEEECCBC----CCCC-TTCHHHHHHHHHHHHHGGGSSTTSEEECBBCCCC
T ss_pred             CeEEEEeeCCCcchhhHHHHHHHHHhcCCcEEEEeCC----CCCC-CCCCCHHHHHHHHHHHHHhCCCCcEEEEecCchh
Confidence            45788899999999999999998866 7755553211    1122 23457888998887631   1133333 12322 


Q ss_pred             -cc---HHHHHHH-HhhcCccEEEEcCCCC
Q 014487          140 -IT---EQFMNRL-FNEHKIDYIIHGDDPC  164 (423)
Q Consensus       140 -~~---~efl~~l-l~~~~~d~VV~G~D~~  164 (423)
                       +.   +..+..+ .+.++|..+++|-|+.
T Consensus       266 ~~agprea~~ha~ir~n~G~th~ivgrdha  295 (573)
T 1m8p_A          266 RMGGPREAIWHAIIRKNHGATHFIVGRDHA  295 (573)
T ss_dssp             CCCHHHHHHHHHHHHHHHTCSEEEECTTTT
T ss_pred             hccCchHHHHHHHHHHHCCCCeEEECCCCC
Confidence             11   2233443 3578999999998753

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=89.15  E-value=1.4  Score=46.17  Aligned_cols=94  Identities=19%  Similarity=0.189  Sum_probs=59.9

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHH-hcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCc----cccEEEe-cCCcc
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKA-LGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK----WVDEVIA-NAPYA  139 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~-~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~----~VD~vi~-~~p~~  139 (423)
                      ++|++.=+++++|.||..++++|.. .++.|+|-+.-    -..| +-=.+.+-|++.++.+-    --+.++. ..|..
T Consensus       164 ~~v~afqtrnP~Hr~H~~l~~~a~~~~~~~llv~p~~----g~~k-~~di~~~~R~~~~~~~~~~~~p~~~v~~~~~p~~  238 (546)
T 2gks_A          164 DKIVAFQTRNPMHRVHEELTKRAMEKVGGGLLLHPVV----GLTK-PGDVDVYTRMRIYKVLYEKYYDKKKTILAFLPLA  238 (546)
T ss_dssp             SCEEEECCSSCCCHHHHHHHHHHHHHHTSEEEECCBC----SBCC-TTSCCHHHHHHHHHHHHHHHSCTTTEEECBBCCB
T ss_pred             CcEEEEecCCCCcHHHHHHHHHHHHhcCCcEEEEeCc----CCCC-CCCCCHHHHHHHHHHHHHhcCCCCcEEEeecCch
Confidence            4688899999999999999999986 57766553222    1223 23468899998887641    1122332 22322


Q ss_pred             cc-----HHHHHHHH-hhcCccEEEEcCCCC
Q 014487          140 IT-----EQFMNRLF-NEHKIDYIIHGDDPC  164 (423)
Q Consensus       140 ~~-----~efl~~ll-~~~~~d~VV~G~D~~  164 (423)
                      ..     +.-+..++ +.++|..+++|-|..
T Consensus       239 m~~agprea~~ha~ir~n~G~th~ivgrdha  269 (546)
T 2gks_A          239 MRMAGPREALWHGIIRRNYGATHFIVGRDHA  269 (546)
T ss_dssp             CCCCTHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred             hhccCchHHHHHHHHHHhCCCCeEEECCCCC
Confidence            11     23344444 579999999998763

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=85.49  E-value=11  Score=40.30  Aligned_cols=97  Identities=15%  Similarity=0.055  Sum_probs=59.4

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHH-hcCe----eEEEEecchhhhccCCCCCCcHHHHHHHHhcCc-----cccEEEe
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKA-LGDE----LVVGVVSDEEIIANKGPPVLSMEERLALVSGLK-----WVDEVIA  134 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~-~~d~----LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~-----~VD~vi~  134 (423)
                      -++|++.=+-+++|.||..|++.|.+ .++.    -.+-+|+  .+-..| +-=++.+-|++-.+.+-     --+.++.
T Consensus       412 w~~VvafqtrNP~HraHe~l~~~a~~~~~d~g~~~~~lll~p--l~G~tk-~~di~~~~r~~~~~~~~~~~y~p~~~~~l  488 (630)
T 1x6v_B          412 ADAVSAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHP--LGGWTK-DDDVPLMWRMKQHAAVLEEGVLNPETTVV  488 (630)
T ss_dssp             CSEEEEEEESSCCCHHHHHHHHHHHHHHHHHTCSSEEEEEEE--BCSCCC-TTSCCHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred             CCeEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCcEEEEe--CcCCCC-CCCCCHHHHHHHHHHHHHcCCCCCcceEE
Confidence            34788888999999999999999986 3441    1122333  121222 33567888888776531     1233443


Q ss_pred             -cCCcccc-----HHHHHHHH-hhcCccEEEEcCCCC
Q 014487          135 -NAPYAIT-----EQFMNRLF-NEHKIDYIIHGDDPC  164 (423)
Q Consensus       135 -~~p~~~~-----~efl~~ll-~~~~~d~VV~G~D~~  164 (423)
                       ..|+.+-     +..+..++ +.++|..+++|-|..
T Consensus       489 ~~~p~~mryaGPrEa~~hai~rkN~Gcth~IVGrdhA  525 (630)
T 1x6v_B          489 AIFPSPMMYAGPTEVQWHCRARMVAGANFYIVGRDPA  525 (630)
T ss_dssp             CCBCCCCCCCHHHHHHHHHHHHHHTTCSEEEECSSTT
T ss_pred             eeccchhhhcCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence             1232221     34455544 569999999999974

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=83.02  E-value=7  Score=41.00  Aligned_cols=94  Identities=7%  Similarity=0.021  Sum_probs=55.3

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHH-HhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCc---cccEEEe-cCCccc
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAK-ALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---WVDEVIA-NAPYAI  140 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~-~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~---~VD~vi~-~~p~~~  140 (423)
                      ++|++.=+-+++|.||..++++|. +.++.|++  ++  .+-..| +-=++.+-|++-.+.+.   --+.++. -.|+.+
T Consensus       164 ~~v~afqtrnp~Hrah~~~~~~~~~~~~~~lll--~p--l~g~~k-~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~p~~m  238 (552)
T 3cr8_A          164 RRIIAWQARQPMHRAQYEFCLKSAIENEANLLL--HP--QVGGDI-TEAPAYFGLVRSFLAIRDRFPAATTQLSLLPAPP  238 (552)
T ss_dssp             CSEEEECCSSCCCHHHHHHHHHHHHHTTCEEEE--CC--BCCCCT-TTCTTHHHHHHHHHHHGGGSCGGGEEECBBCSCC
T ss_pred             CceEEEecCCCCchHHHHHHHHHHHhcCCeEEE--Ee--ccCCCC-CCCCCHHHHHHHHHHHHHhCCCccEEEeecchhh
Confidence            457888999999999999999998 66664443  33  122222 33567788887776531   1223332 233322


Q ss_pred             c-----HHHHHHHH-hhcCccEEEEcCCCC
Q 014487          141 T-----EQFMNRLF-NEHKIDYIIHGDDPC  164 (423)
Q Consensus       141 ~-----~efl~~ll-~~~~~d~VV~G~D~~  164 (423)
                      -     +.-+..++ +.|+|..+++|-|..
T Consensus       239 ~~agprea~~ha~~r~n~G~th~ivGrdha  268 (552)
T 3cr8_A          239 PEASGRALLLRAIVARNFGCSLLIAGGEHQ  268 (552)
T ss_dssp             CCSCSHHHHHHHHHHHHHTCSEEEC-----
T ss_pred             cccCcHHHHHHHHHHHhCCCCeeeeCCCCC
Confidence            1     34455544 569999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	423
d1coza_	126	c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltr	8e-21
d1coza_	126	c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltr	2e-15
d1lw7a1	163	c.26.1.3 (A:57-219) Transcriptional regulator NadR	2e-12
d1lw7a1	163	c.26.1.3 (A:57-219) Transcriptional regulator NadR	1e-06
d1f9aa_	164	c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad	7e-04
d1f9aa_	164	c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad	0.002
d1ej2a_	167	c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad	0.001
d1tfua_	157	c.26.1.3 (A:) Phosphopantetheine adenylyltransfera	0.003

>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]} Length = 126

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

 Score = 85.3 bits (210), Expect = 8e-21
 Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 10/134 (7%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           +V   G FDL+H+GH   L +AK LGD LVV + +DE  +  +     S E R  ++  +
Sbjct: 3   KVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETI 62

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
           ++VDEVI    +   +Q +     +H ID  + G       D    +   K       + 
Sbjct: 63  RYVDEVIPEKNWEQKKQDI----IDHNIDVFVMG------DDWEGKFDFLKDQCEVVYLP 112

Query: 187 RTEGVSSTDIVGRI 200
           RTEG+S+T I   I
Sbjct: 113 RTEGISTTKIKEEI 126

>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]} Length = 126

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

 Score = 70.3 bits (171), Expect = 2e-15
 Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 11/136 (8%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV 316
           + V   G FDL H GH+++L++A+QLGD+L+V I TD+     +           R L +
Sbjct: 2   KKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEF--NLQKQKKAYHSYEHRKLIL 59

Query: 317 LACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQL 376
              RYVDEVI    WE  K  I   NI + V G   E           ++  K       
Sbjct: 60  ETIRYVDEVIPEKNWEQKKQDIIDHNIDVFVMGDDWE---------GKFDFLKDQCEVVY 110

Query: 377 LESPKSITTTSVAQRI 392
           L   + I+TT + + I
Sbjct: 111 LPRTEGISTTKIKEEI 126

>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 63.3 bits (153), Expect = 2e-12
 Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 18/151 (11%)

Query: 63  KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP-----PVLSME 117
           +K+V V   G F  +H GH N + +A +  DEL V V SD               + +++
Sbjct: 1   EKKVGVIF-GKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQ 59

Query: 118 ERLALVSGLKWVDEVI--------ANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDG 169
           +RL  +  +    +             P             +                + 
Sbjct: 60  DRLRWMQQIFKYQKNQIFIHHLVEDGIPSYPNGWQSWSEAVKTLFHEKHFEPSIVFSSEP 119

Query: 170 TDAYALAKKVGRYKQI----KRTEGVSSTDI 196
            D     K +G    +    +    VS+T I
Sbjct: 120 QDKAPYEKYLGLEVSLVDPDRTFFNVSATKI 150

>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ---IVSEHRGSYHPIMHLHERS 313
           +V  I G F   H GH+ ++ +A    D L V + +D    +   +      +  + +R 
Sbjct: 3   KVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRL 62

Query: 314 LSVLACRYVDEVII 327
             +       +  I
Sbjct: 63  RWMQQIFKYQKNQI 76

>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 19/142 (13%), Positives = 48/142 (33%), Gaps = 14/142 (9%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           R ++ G F   H GH   +++     DE+++G+ S ++   +      +  ER      +
Sbjct: 2   RGFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKS--HTLENPFTAGER------I 53

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK--KVGRYKQ 184
             + + + +         +  +         +    P      +    +    +   Y+ 
Sbjct: 54  LMITQSLKDYDLTYYPIPIKDIEFNSIWVSYVESLTPPFDIVYSGNPLVRVLFEERGYEV 113

Query: 185 I----KRTEGVSSTDIVGRILS 202
                   +  S T+I  R+L+
Sbjct: 114 KRPEMFNRKEYSGTEIRRRMLN 135

>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 9/143 (6%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV 316
           R   I G F  FH GH+E++KK  +  D +++GI + Q       +        ER L +
Sbjct: 2   RGFII-GRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQ----KSHTLENPFTAGERILMI 56

Query: 317 LACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGI--F 374
                + +  +       KD+         V       +   +G      + +  G    
Sbjct: 57  TQS--LKDYDLTYYPIPIKDIEFNSIWVSYVESLTPPFDIVYSGNPLVRVLFEERGYEVK 114

Query: 375 QLLESPKSITTTSVAQRIIANHE 397
           +     +   + +  +R + N E
Sbjct: 115 RPEMFNRKEYSGTEIRRRMLNGE 137

>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ 294
           R + + G    FH GH++++K   +  D L++ I + Q
Sbjct: 2   RGLLV-GRMQPFHRGHLQVIKSILEEVDELIICIGSAQ 38

>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 157

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 1/99 (1%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV 316
             V   G+FD    GHV+I ++A    D ++V I  +   +        I  + E +  +
Sbjct: 3   GAVCP-GSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDLDERIAMVKESTTHL 61

Query: 317 LACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETN 355
              R      +   +  +  M               E  
Sbjct: 62  PNLRVQVGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQ 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	423
d1coza_	126	CTP:glycerol-3-phosphate cytidylyltransferase {Bac	99.97
d1coza_	126	CTP:glycerol-3-phosphate cytidylyltransferase {Bac	99.96
d1mrza2	157	FMN adenylyltransferase domain of bifunctional FAD	99.82
d1f9aa_	164	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.42
d1lw7a1	163	Transcriptional regulator NadR, NMN-adenylyltransf	99.34
d1ej2a_	167	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.32
d1lw7a1	163	Transcriptional regulator NadR, NMN-adenylyltransf	99.2
d1f9aa_	164	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.19
d1kr2a_	271	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.17
d1tfua_	157	Phosphopantetheine adenylyltransferase {Mycobacter	99.17
d1qjca_	157	Phosphopantetheine adenylyltransferase {Escherichi	99.16
d1od6a_	160	Phosphopantetheine adenylyltransferase {Thermus th	99.12
d1ej2a_	167	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.08
d1nuua_	233	Cytosolic NMN/NAMN adenylyltransferase {Human (Hom	99.06
d1o6ba_	163	Phosphopantetheine adenylyltransferase {Bacillus s	99.06
d1kama_	189	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.03
d1jhda2	223	ATP sulfurylase catalytic domain {Sulfur-oxidizing	99.03
d1k4ma_	213	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.0
d1vlha_	157	Phosphopantetheine adenylyltransferase {Thermotoga	98.96
d1o6ba_	163	Phosphopantetheine adenylyltransferase {Bacillus s	98.95
d1od6a_	160	Phosphopantetheine adenylyltransferase {Thermus th	98.92
d1qjca_	157	Phosphopantetheine adenylyltransferase {Escherichi	98.89
d1tfua_	157	Phosphopantetheine adenylyltransferase {Mycobacter	98.86
d1vlha_	157	Phosphopantetheine adenylyltransferase {Thermotoga	98.73
d1mrza2	157	FMN adenylyltransferase domain of bifunctional FAD	98.57
d1kama_	189	Nicotinamide mononucleotide (NMN) adenylyltransfer	98.5
d1nuua_	233	Cytosolic NMN/NAMN adenylyltransferase {Human (Hom	98.37
d1k4ma_	213	Nicotinamide mononucleotide (NMN) adenylyltransfer	97.96
d1kr2a_	271	Nicotinamide mononucleotide (NMN) adenylyltransfer	97.83
d1jhda2	223	ATP sulfurylase catalytic domain {Sulfur-oxidizing	97.81
d1v47a2	214	ATP sulfurylase catalytic domain {Thermus thermoph	96.01
d1g8fa2	221	ATP sulfurylase catalytic domain {Baker's yeast (S	95.58
d1x6va2	235	ATP sulfurylase catalytic domain {Human (Homo sapi	95.57
d1v8fa_	276	Pantothenate synthetase (Pantoate-beta-alanine lig	95.44
d1ihoa_	282	Pantothenate synthetase (Pantoate-beta-alanine lig	94.95
d1v8fa_	276	Pantothenate synthetase (Pantoate-beta-alanine lig	94.53
d1ihoa_	282	Pantothenate synthetase (Pantoate-beta-alanine lig	94.44
d2a84a1	286	Pantothenate synthetase (Pantoate-beta-alanine lig	93.61
d2a84a1	286	Pantothenate synthetase (Pantoate-beta-alanine lig	88.69

>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.97  E-value=1.6e-31  Score=229.63  Aligned_cols=126  Identities=34%  Similarity=0.518  Sum_probs=115.4

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCCCCchH
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK  335 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p~~~~~  335 (423)
                      +|+|++.|+||+||.||+++|++|+++||+|||||++|+.+..+|+  +|++|++||++++++|++||+|++.+++..+.
T Consensus         1 Mk~V~~~G~FD~lH~GH~~~l~~Ak~~gd~liV~v~sD~~~~~~k~--~pi~~~~eR~~~l~~~~~Vd~v~~~~~~~~~~   78 (126)
T d1coza_           1 MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQK--KAYHSYEHRKLILETIRYVDEVIPEKNWEQKK   78 (126)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHTTSSEEEEEEECHHHHHHHTC--CCSSCHHHHHHHHTTBTTCCEEEEECCSTTHH
T ss_pred             CcEEEEeeEeCCCCHHHHHHHHHHHhhCceeeeeeeccchhhhccC--cccCCHHHHHHHhhhhcccceeeecccccccH
Confidence            5789999999999999999999999999999999999999887665  69999999999999999999999999988888


Q ss_pred             HHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHH
Q 014487          336 DMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRI  392 (423)
Q Consensus       336 ~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~i~~~~~~Stt~Ii~RI  392 (423)
                      +++.+++||++++|+||+..         +...+.+|+++.+++++++|||.|++||
T Consensus        79 ~~i~~~~~d~~v~G~D~~~~---------~~~~~~~~~~i~~~~~~~iSST~i~~~I  126 (126)
T d1coza_          79 QDIIDHNIDVFVMGDDWEGK---------FDFLKDQCEVVYLPRTEGISTTKIKEEI  126 (126)
T ss_dssp             HHHHHTTCSEEEEEGGGTTT---------TGGGTTTSEEEEECCCTTCCHHHHHHTC
T ss_pred             hhhhccCCCEeeeccccccc---------hHHHHcCCEEEEECCCCCccHHHHHHhC
Confidence            99999999999999998653         2345678999999999999999999986

>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.96  E-value=2e-29  Score=216.34  Aligned_cols=126  Identities=34%  Similarity=0.495  Sum_probs=111.8

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCccccEEEecCCccccHHH
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~vi~~~p~~~~~ef  144 (423)
                      |++|++.|+||++|.||+++|++|+++|+.|+||+++|+.+..+|++|++|++||+++|++|+|||+|++..|+....++
T Consensus         1 Mk~V~~~G~FD~lH~GH~~~l~~Ak~~gd~liV~v~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~v~~~~~~~~~~~~   80 (126)
T d1coza_           1 MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVIPEKNWEQKKQD   80 (126)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHTTSSEEEEEEECHHHHHHHTCCCSSCHHHHHHHHTTBTTCCEEEEECCSTTHHHH
T ss_pred             CcEEEEeeEeCCCCHHHHHHHHHHHhhCceeeeeeeccchhhhccCcccCCHHHHHHHhhhhcccceeeecccccccHhh
Confidence            57999999999999999999999999999999999999988777889999999999999999999999998777655555


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 014487          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRI  200 (423)
Q Consensus       145 l~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~iSST~Ir~rI  200 (423)
                      +    .+++||++++|+||..      .+..++..++++.+++++++|||.||+||
T Consensus        81 i----~~~~~d~~v~G~D~~~------~~~~~~~~~~~i~~~~~~~iSST~i~~~I  126 (126)
T d1coza_          81 I----IDHNIDVFVMGDDWEG------KFDFLKDQCEVVYLPRTEGISTTKIKEEI  126 (126)
T ss_dssp             H----HHTTCSEEEEEGGGTT------TTGGGTTTSEEEEECCCTTCCHHHHHHTC
T ss_pred             h----hccCCCEeeecccccc------chHHHHcCCEEEEECCCCCccHHHHHHhC
Confidence            4    4689999999999853      23455778899999999999999999875

>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: FMN adenylyltransferase domain of bifunctional FAD synthetase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=3.5e-20  Score=164.17  Aligned_cols=133  Identities=23%  Similarity=0.306  Sum_probs=102.0

Q ss_pred             EEEecccCcCcHHHHHHHHHHHHhc-----CeeEEEEecchhhhccC-CCCCCcHHHHHHHHhcCccccEEEecCC-ccc
Q 014487           68 VYMDGCFDLMHYGHANALRQAKALG-----DELVVGVVSDEEIIANK-GPPVLSMEERLALVSGLKWVDEVIANAP-YAI  140 (423)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~-----d~LiVgV~sd~~i~~~K-~~pi~t~eER~~~l~~~~~VD~vi~~~p-~~~  140 (423)
                      |+++|+|||+|.||+.+|++|++.+     ..+++.+.+++.....+ ++++++.++|.++++.+ +++.++.-.- ..+
T Consensus         1 VvtiG~FDGvH~GHq~li~~~~~~a~~~~~~~~v~tf~~~p~~~~~~~~~~l~~~~~k~~~l~~~-g~~~~l~f~~~~~l   79 (157)
T d1mrza2           1 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSRY-ARTVVLDFFRIKDL   79 (157)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTTCCCBSSCHHHHHHHHTTT-SCEEEECHHHHTTC
T ss_pred             CEEEEcccchhHHHHHHHHHHHHHHHHcCCCceEeecCCCchheEeccccccccHHHhhhhhhcc-cceeeehhhhHhhh
Confidence            6899999999999999999998875     44666666666543322 26799999999999998 5776664110 012


Q ss_pred             c-HHHHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCC-cEEEecc----CCCCCHHHHHHHHHhc
Q 014487          141 T-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKR----TEGVSSTDIVGRILSS  203 (423)
Q Consensus       141 ~-~efl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~r----~~~iSST~Ir~rI~~~  203 (423)
                      + ++|+++++.  +++.||+|+||+||+++.++.+.+++.| ++..++.    .+.||||.||+.|.++
T Consensus        80 s~~~Fi~~~l~--~~~~ivvG~Df~FG~~r~G~~~~Lk~~g~~v~~i~~~~~~~~~ISST~IR~~l~~G  146 (157)
T d1mrza2          80 TPEGFVERYLS--GVSAVVVGRDFRFGKNASGNASFLRKKGVEVYEIEDVVVQGKRVSSSLIRNLVQEG  146 (157)
T ss_dssp             CHHHHHHHHCT--TCCEEEEETTCCBSGGGCBCHHHHHHTTCEEEEECCCEETTEECCHHHHHHHHHTT
T ss_pred             hhhHHHHHHhh--cCcEEEEecCcccccccccchhhhccceeEEEeeccEeeCCcEEcHHHHHHHHHcC
Confidence            2 589888763  7899999999999999999999999887 4444443    2349999999999865

>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.42  E-value=1.2e-12  Score=113.52  Aligned_cols=127  Identities=17%  Similarity=0.220  Sum_probs=78.2

Q ss_pred             EEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcC-cc---ccEEEecCCccccHH
Q 014487           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KW---VDEVIANAPYAITEQ  143 (423)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~---VD~vi~~~p~~~~~e  143 (423)
                      ++++|+|||+|.||+.++++|++.+|.++|++.+...  ..+..+.++.+||.+|++.. ..   .........+.....
T Consensus         3 gl~~G~FdP~H~GH~~li~~a~~~~d~v~v~i~~~~~--~~~~~~~~s~~~R~~~i~~~~~~~~~~~~~~~~~~~~~~~~   80 (164)
T d1f9aa_           3 GFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQK--SHTLENPFTAGERILMITQSLKDYDLTYYPIPIKDIEFNSI   80 (164)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTC--CSSSSCCSCHHHHHHHHHHHHTTSSCEEEEEECCCCSCGGG
T ss_pred             EEEecccCCCCHHHHHHHHHHHHhCCCeEEEecCCcc--ccCcCCCCCHHHHHHHHHHHhhhcCcceeeccccccchHHH
Confidence            8999999999999999999999999999999977642  22235678999999999852 11   112222223333333


Q ss_pred             HHHHHHhhcCccEEEEcCCCCCCCCCCcHHHHHHhCC-cEEEecc--CCCCCHHHHHHHHHhc
Q 014487          144 FMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKR--TEGVSSTDIVGRILSS  203 (423)
Q Consensus       144 fl~~ll~~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~r--~~~iSST~Ir~rI~~~  203 (423)
                      +... +..+.+++.+...+      +.......++.+ .+..++.  ..+||||+||++|.++
T Consensus        81 ~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~ISST~IR~~i~~g  136 (164)
T d1f9aa_          81 WVSY-VESLTPPFDIVYSG------NPLVRVLFEERGYEVKRPEMFNRKEYSGTEIRRRMLNG  136 (164)
T ss_dssp             HHHH-HHHHSCCCSEEECC------CHHHHHHHHHTTCEEECCCCCSTTTSSHHHHHHHHHHT
T ss_pred             HHHH-HHhhcCceEEEEcC------hHHHHHHHHhcCCeEEEecCcCCCCcCHHHHHHHHHcC
Confidence            3322 22333332222111      122233445544 3333332  3479999999999865

>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.34  E-value=8e-13  Score=113.39  Aligned_cols=62  Identities=27%  Similarity=0.240  Sum_probs=52.8

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhh-----ccCCCCCCcHHHHHHHHhcC
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-----ANKGPPVLSMEERLALVSGL  126 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~-----~~K~~pi~t~eER~~~l~~~  126 (423)
                      .++++++|+|||+|.||+.++++|++.++.++|++.+++...     .....++.+.++|.++++.+
T Consensus         2 kkigl~~G~FdP~H~GH~~l~~~a~~~~d~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~   68 (163)
T d1lw7a1           2 KKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQI   68 (163)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTCSEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHH
T ss_pred             CeEEEEeeeCCCCCHHHHHHHHHHHHhCCccEEEEECCCCccccccccccccCCCCHHHHHHHHHHh
Confidence            468899999999999999999999999999999999887531     12336889999999999764

>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.32  E-value=4.1e-12  Score=110.72  Aligned_cols=127  Identities=16%  Similarity=0.183  Sum_probs=77.4

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcC------ccccEEEecCC-cc
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL------KWVDEVIANAP-YA  139 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~------~~VD~vi~~~p-~~  139 (423)
                      +++++|+|||+|.||+.++++|.+.++.++|+|.+...  ..+.+..++.+||++|++..      ..+.......+ ..
T Consensus         2 kgi~~G~FdP~H~GH~~ii~~a~~~~d~v~v~i~~~~~--~~~~~~~~~~~~R~~mi~~~~~~~~~~~~~~~~~~~~~~~   79 (167)
T d1ej2a_           2 RGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQL--SHSIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQDIE   79 (167)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTC--CSSSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEECCCCS
T ss_pred             EEEEeeccCCCCHHHHHHHHHHHHHCCceEEEEecCCC--CCCccccccHHHHHHHHHHHHHHcCCCceeEEeccchhhh
Confidence            38999999999999999999999999999999987542  22336788999999999841      12222222222 22


Q ss_pred             ccHHHHHHHHh-hcCccEEEEcCCCCCCCCCCcHHHHHHhCC-cEEEecc--CCCCCHHHHHHHHHhc
Q 014487          140 ITEQFMNRLFN-EHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKR--TEGVSSTDIVGRILSS  203 (423)
Q Consensus       140 ~~~efl~~ll~-~~~~d~VV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~r--~~~iSST~Ir~rI~~~  203 (423)
                      ....+...... ..+.+.++.++        .......+..+ .+..++.  ...||||+||++|..+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~ISST~IR~~i~~g  139 (167)
T d1ej2a_          80 CNALWVGHIKMLTPPFDRVYSGN--------PLVQRLFSEDGYEVTAPPLFYRDRYSGTEVRRRMLDD  139 (167)
T ss_dssp             CHHHHHHHHHHHSCCCSEEECCC--------HHHHHHHHHTTCCEECCCCSSTTTSSHHHHHHHHHHT
T ss_pred             hHHHHHHHHheeeeceeEEEcch--------HHHHHHHHcCCCeEEeccccccccccHHHHHHHHHcC
Confidence            22222222111 12344443221        11233444444 3444433  2469999999999865

>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.20  E-value=2.8e-11  Score=103.51  Aligned_cols=67  Identities=19%  Similarity=0.167  Sum_probs=55.7

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhh----ccCCCCCCCCHHHHHHHHHhhccc
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSE----HRGSYHPIMHLHERSLSVLACRYV  322 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~----~Kg~~~pi~~~~ER~~~v~~~~~V  322 (423)
                      +++++++.|+|||+|.||+.++++|++.||.|+|++.++.....    .++. .++.+.++|..++..+...
T Consensus         1 ~kkigl~~G~FdP~H~GH~~l~~~a~~~~d~v~v~i~~~~~~~~~~~~~~~~-~~~~~~~~R~~~l~~~~~~   71 (163)
T d1lw7a1           1 EKKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKM-KRMPTVQDRLRWMQQIFKY   71 (163)
T ss_dssp             CCCEEEEEECCSSCCHHHHHHHHHHHTTCSEEEEEEEECHHHHHHHHHHTTC-SSCCCHHHHHHHHHHHTST
T ss_pred             CCeEEEEeeeCCCCCHHHHHHHHHHHHhCCccEEEEECCCCccccccccccc-cCCCCHHHHHHHHHHhCcc
Confidence            36899999999999999999999999999999999999864322    1222 5888999999988777543

>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.19  E-value=6.3e-11  Score=102.40  Aligned_cols=127  Identities=19%  Similarity=0.189  Sum_probs=80.1

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh-hcccCeeEE---cCC-
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVII---GAP-  330 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~-~~~Vd~Vvi---~~p-  330 (423)
                      +| +++.|+|||+|.||+.++++|++.+|.++|++.++...   +.+ .+.++.+||.++++. +...+...+   ... 
T Consensus         1 mk-gl~~G~FdP~H~GH~~li~~a~~~~d~v~v~i~~~~~~---~~~-~~~~s~~~R~~~i~~~~~~~~~~~~~~~~~~~   75 (164)
T d1f9aa_           1 LR-GFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKS---HTL-ENPFTAGERILMITQSLKDYDLTYYPIPIKDI   75 (164)
T ss_dssp             CE-EEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTCC---SSS-SCCSCHHHHHHHHHHHHTTSSCEEEEEECCCC
T ss_pred             CE-EEEecccCCCCHHHHHHHHHHHHhCCCeEEEecCCccc---cCc-CCCCCHHHHHHHHHHHhhhcCcceeecccccc
Confidence            35 88999999999999999999999999999999877532   222 466799999988765 344332222   111 


Q ss_pred             --CCchHHHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhCCeE-EEeC--CCCCCCHHHHHHHHHhch
Q 014487          331 --WEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIF-QLLE--SPKSITTTSVAQRIIANH  396 (423)
Q Consensus       331 --~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~-~~i~--~~~~~Stt~Ii~RI~~~~  396 (423)
                        ...+.++++.+.+++.+....         ...........|.. ..++  ...++|+|.|.++|.++.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~ISST~IR~~i~~g~  137 (164)
T d1f9aa_          76 EFNSIWVSYVESLTPPFDIVYSG---------NPLVRVLFEERGYEVKRPEMFNRKEYSGTEIRRRMLNGE  137 (164)
T ss_dssp             SCGGGHHHHHHHHSCCCSEEECC---------CHHHHHHHHHTTCEEECCCCCSTTTSSHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHhhcCceEEEEcC---------hHHHHHHHHhcCCeEEEecCcCCCCcCHHHHHHHHHcCC
Confidence              223345566655443222111         01112233445533 3333  236799999999997654

>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.8e-11  Score=112.16  Aligned_cols=84  Identities=15%  Similarity=0.101  Sum_probs=55.9

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhc--------CeeEEEEecchhhhccCCCCCCcHHHHHHHHhc-CccccEEEe-
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALG--------DELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIA-  134 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~--------d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~vi~-  134 (423)
                      +..++++|+|||+|.||+.+++.|++..        +.+++.++.++    .+.+.+.+.++|++|++- ++..+.+.. 
T Consensus         4 ~~v~l~~GSFdP~H~GHl~ia~~a~~~l~~~~~~~~~~~~~~P~~~~----~~k~~~~s~~~Rl~Ml~la~~~~~~~~vs   79 (271)
T d1kr2a_           4 EVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDA----YKKKGLIPAYHRVIMAELATKNSKWVEVD   79 (271)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGG----GCCTTCCCHHHHHHHHHHHTTTCSSEEEC
T ss_pred             cEEEEEccccCcchHHHHHHHHHHHHHHhhccccceeEEEEecCCCC----CcCCCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence            3456889999999999999999988642        34555555443    233578899999999974 334444433 


Q ss_pred             -----cCCccccHHHHHHHHhhc
Q 014487          135 -----NAPYAITEQFMNRLFNEH  152 (423)
Q Consensus       135 -----~~p~~~~~efl~~ll~~~  152 (423)
                           ...+++|.+.++.+-+++
T Consensus        80 ~~E~~~~~~syTidTl~~l~~~~  102 (271)
T d1kr2a_          80 TWESLQKEWKETLKVLRHHQEKL  102 (271)
T ss_dssp             CHHHHCSSCCCHHHHHHHHHHHH
T ss_pred             ehhhhcCCCccHHHHHHHHHHHh
Confidence                 233455666766655544

>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.17  E-value=1.2e-11  Score=105.81  Aligned_cols=39  Identities=28%  Similarity=0.434  Sum_probs=35.8

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecch
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDE  103 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~  103 (423)
                      |++++++|+|||+|.||++++++|.+.+|.++|.+.+.+
T Consensus         1 m~~Av~~GsFdPiH~GHl~i~~~a~~~~d~~~v~~~~~~   39 (157)
T d1tfua_           1 MTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNP   39 (157)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECCS
T ss_pred             CCEeEeCcCCCCCCHHHHHHHHHHHHhcChHHhhccccC
Confidence            568999999999999999999999999999998888765

>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=8.3e-12  Score=106.56  Aligned_cols=54  Identities=26%  Similarity=0.543  Sum_probs=42.6

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHh
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS  124 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~  124 (423)
                      |+++++|+|||+|.||+.++++|.+.+|+++|++.+.+   ..  ++..+..+|..++.
T Consensus         1 k~AifgGsFdP~H~GHl~li~~a~~~~D~v~v~~~~~~---~~--k~~~~~~~~~~~~~   54 (157)
T d1qjca_           1 KRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASP---SK--KPMFTLEERVALAQ   54 (157)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEESCC---SS--CCSSCHHHHHHHHH
T ss_pred             CEEEEeeccCCCCHHHHHHHHHHHHhCCEeeecccCcc---cc--ccccCHHHHHHHHH
Confidence            47899999999999999999999999999999998765   22  34445555555544

>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.12  E-value=4.3e-11  Score=102.48  Aligned_cols=55  Identities=31%  Similarity=0.561  Sum_probs=40.5

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHh
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS  124 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~  124 (423)
                      +|+++|+|||+|.||++++++|.+.+|+|++++..++.   .+.....+..+|+.+..
T Consensus         2 k~ifgGsFdP~H~GHl~ii~~a~~~~D~v~i~~~~~~~---kk~~~~~~~~~~~~~~~   56 (160)
T d1od6a_           2 HVVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENPS---KRGQYLFSAEERLAIIR   56 (160)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECC--------CCSSCHHHHHHHHH
T ss_pred             eEEeeeccCCcCHHHHHHHHHHHHhCCEEEEeccCCCC---ccccccCCHHHHHHHHH
Confidence            36899999999999999999999999999999988763   22234445555554443

>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.08  E-value=3.6e-10  Score=98.03  Aligned_cols=123  Identities=17%  Similarity=0.134  Sum_probs=76.0

Q ss_pred             EEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh-hc-----ccCeeEEcCCCC
Q 014487          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CR-----YVDEVIIGAPWE  332 (423)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~-~~-----~Vd~Vvi~~p~~  332 (423)
                      +++.|+|||+|.||+.++++|.+.+|.++|+|.++...   +.+ ++.++.+||+++++. ++     .+....+..+..
T Consensus         3 gi~~G~FdP~H~GH~~ii~~a~~~~d~v~v~i~~~~~~---~~~-~~~~~~~~R~~mi~~~~~~~~~~~~~~~~~~~~~~   78 (167)
T d1ej2a_           3 GLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLS---HSI-RDPFTAGERVMMLTKALSENGIPASRYYIIPVQDI   78 (167)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTCC---SSS-SSCSCHHHHHHHHHHHHHHTTCCGGGEEEEECCCC
T ss_pred             EEEeeccCCCCHHHHHHHHHHHHHCCceEEEEecCCCC---CCc-cccccHHHHHHHHHHHHHHcCCCceeEEeccchhh
Confidence            88999999999999999999999999999999876432   222 467799999988865 22     222233333221


Q ss_pred             -ch---HHHHhhc--CccEEEecCCcCCCCCCCCCCChHHHHHhCCeE-EEeC--CCCCCCHHHHHHHHHhch
Q 014487          333 -VT---KDMITTF--NICLVVHGTVSETNTPLTGQSDPYEVAKSMGIF-QLLE--SPKSITTTSVAQRIIANH  396 (423)
Q Consensus       333 -~~---~~~i~~~--~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~-~~i~--~~~~~Stt~Ii~RI~~~~  396 (423)
                       ..   ...++.+  +.++++.+..           ......+..|.. ..++  ....+|+|.|.++|..+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~ISST~IR~~i~~g~  140 (167)
T d1ej2a_          79 ECNALWVGHIKMLTPPFDRVYSGNP-----------LVQRLFSEDGYEVTAPPLFYRDRYSGTEVRRRMLDDG  140 (167)
T ss_dssp             SCHHHHHHHHHHHSCCCSEEECCCH-----------HHHHHHHHTTCCEECCCCSSTTTSSHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHheeeeceeEEEcchH-----------HHHHHHHcCCCeEEeccccccccccHHHHHHHHHcCC
Confidence             11   1223333  3333332211           011233445543 3333  224699999999997653

>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human (Homo sapiens), FKSG76 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Cytosolic NMN/NAMN adenylyltransferase
species: Human (Homo sapiens), FKSG76 [TaxId: 9606]

Probab=99.06  E-value=2.6e-10  Score=105.05  Aligned_cols=137  Identities=15%  Similarity=0.064  Sum_probs=81.4

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhc--Cee---EEEEecchhhhccCCCCCCcHHHHHHHHhc-CccccEEEe-----
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALG--DEL---VVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIA-----  134 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~L---iVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~vi~-----  134 (423)
                      ..++++|+|||+|.||+.++++|++..  +.+   +.++.+.. -...+.++..+.++|++|++. +...+.+..     
T Consensus         5 ~vl~~~GSFdP~H~GHl~i~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~R~~M~~la~~~~~~~~v~~~e~   83 (233)
T d1nuua_           5 VVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPV-NDTYGKKDLAASHHRVAMARLALQTSDWIRVDPWES   83 (233)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHHHHSSEEEEEEEEEEC-CTTCSSSCCCCHHHHHHHHHHHGGGCSSEEECCHHH
T ss_pred             EEEEEeeeeCccHHHHHHHHHHHHHHhCcccceeeeeEEEccC-CCCcccCccCCHHHHHHHHHHHHhccCCEEEehHHH
Confidence            456789999999999999999998864  222   11222111 011233688999999999973 222223322     


Q ss_pred             -cCCccccHHHHHHHHhhcC--------------------cc---EEEEcCC----CCCCCCCCc-HHHHHHhCCcEEEe
Q 014487          135 -NAPYAITEQFMNRLFNEHK--------------------ID---YIIHGDD----PCLLPDGTD-AYALAKKVGRYKQI  185 (423)
Q Consensus       135 -~~p~~~~~efl~~ll~~~~--------------------~d---~VV~G~D----~~~g~~g~~-~~~~lk~~g~~~~v  185 (423)
                       ...+++|.+.++.+.+++.                    |+   ++|+|.|    +.....+.+ ..+.+-+...+..+
T Consensus        84 ~~~~~s~ti~tl~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fiiG~D~l~~~~~wk~~~~~~~~~il~~~~~iv~  163 (233)
T d1nuua_          84 EQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCV  163 (233)
T ss_dssp             HSSSCCCHHHHHHHHHHHHC--------------------CCCEEEEEEEHHHHHHTTSTTTSCHHHHHHHHHHTCEEEE
T ss_pred             hCCCCccHHHHHHHHHHHhcccccccccccccchhccccCCCccEEEEEccchhhhcchhhhhcchhHHHHHhhCcEEEE
Confidence             2233455566666555442                    33   5789988    222222221 23334444556666


Q ss_pred             ccC-----------------------------CCCCHHHHHHHHHhc
Q 014487          186 KRT-----------------------------EGVSSTDIVGRILSS  203 (423)
Q Consensus       186 ~r~-----------------------------~~iSST~Ir~rI~~~  203 (423)
                      +|.                             ..||||+||++|..+
T Consensus       164 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g  210 (233)
T d1nuua_         164 GRVSHDPKGYIAESPILRMHQHNIHLAKEPVQNEISATYIRRALGQG  210 (233)
T ss_dssp             CCTTCCHHHHHHHCHHHHHTGGGEEEECCSCCCCCCHHHHHHHHHTT
T ss_pred             eCCCCchhhhhhhHHHHhhccCCEEEecCCccccCCHHHHHHHHHcC
Confidence            552                             148999999999865

>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.06  E-value=6.7e-11  Score=101.99  Aligned_cols=55  Identities=25%  Similarity=0.484  Sum_probs=47.9

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhc
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG  125 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~  125 (423)
                      .+++++|+|||+|.||+.++++|.+.+|+++|.+...+     +.++..+.++|.+++..
T Consensus         2 ~IaifgGsFdPiH~GHl~i~~~a~~~~D~v~v~~~~~~-----~~~~~~~~~~r~~~~~~   56 (163)
T d1o6ba_           2 SIAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNS-----SKKPLFSVEERCELLRE   56 (163)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCC-----SSCCSSCHHHHHHHHHH
T ss_pred             eEEEeccccCCCCHHHHHHHHHHHHhCCEEEEcccccc-----cccccCCHHHHHHHHhh
Confidence            47899999999999999999999999999998877643     23688899999999875

>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.03  E-value=9.2e-10  Score=95.37  Aligned_cols=138  Identities=17%  Similarity=0.075  Sum_probs=70.1

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcC-ccccEEEec------CC
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVDEVIAN------AP  137 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~VD~vi~~------~p  137 (423)
                      +++++++|+|||+|.||+.++++|.+.++.+.|.+.+...-...+..+.....+|..+.... .....+...      ..
T Consensus         2 kkIalfgGSFdP~H~GH~~ii~~a~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~   81 (189)
T d1kama_           2 KKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQNEDYTDSFHRVEMLKLAIQSNPSFKLELVEMEREG   81 (189)
T ss_dssp             CEEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC---------CHHHHHHHHHHHHTTCTTEEECCGGGSTTC
T ss_pred             CEEEEeccCcCCCCHHHHHHHHHHHHHcCCCEEEEEeccCCcccccchhhHHHHHHHHHHhhhccCcceeechhhhccCC
Confidence            45679999999999999999999999985444444332211111113455556666555431 111111110      11


Q ss_pred             ccccHHHHHHHHhhc--CccEEEEcCCCCC-CCCCCcHHHHHHhCCcEEEecc-----------------CCCCCHHHHH
Q 014487          138 YAITEQFMNRLFNEH--KIDYIIHGDDPCL-LPDGTDAYALAKKVGRYKQIKR-----------------TEGVSSTDIV  197 (423)
Q Consensus       138 ~~~~~efl~~ll~~~--~~d~VV~G~D~~~-g~~g~~~~~~lk~~g~~~~v~r-----------------~~~iSST~Ir  197 (423)
                      ..++.+.+..+...+  ...+.+.|.|... ...+......+... .....++                 ...||||.||
T Consensus        82 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR  160 (189)
T d1kama_          82 PSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLDELLNLI-QFIGVKRPGFHVETPYPLLFADVPEFEVSSTMIR  160 (189)
T ss_dssp             CCSHHHHHHHHHHHSTTSEEEEEEETTTTTTCCCCHHHHHHHHHS-EEEEEECSSCCCCCSSCCEEEECCCBCCCHHHHH
T ss_pred             cceehhhhhHHhhcCCcchhhhhhhcccccccccchhhhhhhhhc-ceeeccccccccccchhhhccccccCcCChHHHH
Confidence            122334444333333  2336777777433 33333333333332 2222211                 1259999999


Q ss_pred             HHHHhc
Q 014487          198 GRILSS  203 (423)
Q Consensus       198 ~rI~~~  203 (423)
                      +++..+
T Consensus       161 ~~i~~~  166 (189)
T d1kama_         161 ERFKSK  166 (189)
T ss_dssp             HHHHHT
T ss_pred             HHHHcC
Confidence            999865

>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain {Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]

Probab=99.03  E-value=2.3e-10  Score=105.04  Aligned_cols=105  Identities=17%  Similarity=0.084  Sum_probs=67.7

Q ss_pred             CCCeEEEEecccCcCcHHHHHHHHHHHHhc--CeeEEEEecchhhhccCC-CCCCcHHHHHHHHhc-Ccc-----ccEE-
Q 014487           63 KKRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKW-----VDEV-  132 (423)
Q Consensus        63 ~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~-~~~-----VD~v-  132 (423)
                      .+-++|++.|+||++|.||+.+++.|.+..  |++++.+...+   +.|+ .+..+...|++|+.. +..     |+.. 
T Consensus        17 ~~~~~v~~f~TfnP~H~GHl~ia~~a~~~~~ld~v~~iP~~~~---p~K~~~~~~~~~~r~~m~~~a~~~~~~~~is~~E   93 (223)
T d1jhda2          17 HGWSKVVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLGK---LKKGDIPAPVRDAAIRTMAEVYFPPNTVMVTGYG   93 (223)
T ss_dssp             HTCSSEEEEEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEECC---CCTTCCCHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCCEEEEeeCCCCCCHHHHHHHHHHHHHhCcCceEEecccCC---CCcCCCccccHHHHHHHHHHhhcCCCceeecccc
Confidence            344567788999999999999999999874  78888877765   3454 456688899988873 222     1111 


Q ss_pred             EecCCccccHHHHHHHHhh-cCccEEEEcCC-CCCCCCCC
Q 014487          133 IANAPYAITEQFMNRLFNE-HKIDYIIHGDD-PCLLPDGT  170 (423)
Q Consensus       133 i~~~p~~~~~efl~~ll~~-~~~d~VV~G~D-~~~g~~g~  170 (423)
                      +....-+++.+.++.+..+ .++.++++|.| +-.+..|.
T Consensus        94 ~~~~~~syt~~tl~~l~~~~~~~~~~iiG~D~~~~~~~w~  133 (223)
T d1jhda2          94 FDMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVGDYYG  133 (223)
T ss_dssp             CCCCCCTHHHHHHHHHHHHHTTCSEEEECTTTTCCTTCSC
T ss_pred             ccccCCCcHHHHHHHHHHhCCcceEEEEeecccccccCcC
Confidence            2211123456777666544 34567777766 44444443

>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=3.2e-10  Score=100.24  Aligned_cols=58  Identities=19%  Similarity=0.332  Sum_probs=43.6

Q ss_pred             CCeEEEEecccCcCcHHHHHHHHHHHHhc--CeeEEEEecchhhhccCCCCCCcHHHHHHHHh
Q 014487           64 KRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVS  124 (423)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~  124 (423)
                      ++.+++++|+|||+|.||+.+++.|++..  +++++.+..++.   .|........+|.+++.
T Consensus         2 ~~~~AlfgGSFnP~h~GHl~~~~~a~~~~~~d~v~~~p~~~~~---~k~~~~~~~~~~~~~~~   61 (213)
T d1k4ma_           2 KSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP---HRPQPEANSVQRKHMLE   61 (213)
T ss_dssp             CCCEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCT---TSCCCSSCHHHHHHHHH
T ss_pred             CccEEEEecCcCcCcHHHHHHHHHHHHHcCCCEEEEEEeCCCc---hhcccccchHHHHHHHH
Confidence            45689999999999999999999999975  788888888753   34334444455555544

>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.96  E-value=1.5e-09  Score=92.32  Aligned_cols=36  Identities=33%  Similarity=0.524  Sum_probs=33.7

Q ss_pred             EEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecch
Q 014487           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDE  103 (423)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~  103 (423)
                      ++++|+|||+|.||+.++++|.+.+|+++|++...+
T Consensus         3 aifgGsFdPiH~GHl~i~~~a~~~~D~v~v~~~~~~   38 (157)
T d1vlha_           3 AVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENP   38 (157)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEECCT
T ss_pred             EEEeecCCCCcHHHHHHHHHHHHhcCcccccccccc
Confidence            899999999999999999999999999999887754

>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.95  E-value=1.3e-09  Score=93.64  Aligned_cols=132  Identities=12%  Similarity=0.156  Sum_probs=77.4

Q ss_pred             eEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhh-cccCeeEEcCCCCchH
Q 014487          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGAPWEVTK  335 (423)
Q Consensus       257 ~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~-~~Vd~Vvi~~p~~~~~  335 (423)
                      +|++++|+|||+|.||+.++++|.+.+|+++|.+..+.    .   .+|.++.++|..++... ................
T Consensus         2 ~IaifgGsFdPiH~GHl~i~~~a~~~~D~v~v~~~~~~----~---~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~   74 (163)
T d1o6ba_           2 SIAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNS----S---KKPLFSVEERCELLREVTKDIPNITVETSQGLLI   74 (163)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCC----S---SCCSSCHHHHHHHHHHHHTTCTTEEEEECSSCHH
T ss_pred             eEEEeccccCCCCHHHHHHHHHHHHhCCEEEEcccccc----c---ccccCCHHHHHHHHhhhccccCcceecccccccc
Confidence            68999999999999999999999999999999988653    1   26899999999777554 3344333333333333


Q ss_pred             HHHhhcCccEEEecC-CcCCCCCCCCCCChHHHHH-hCCeEEEe---CCCCCCCHHHHHHHHHhch
Q 014487          336 DMITTFNICLVVHGT-VSETNTPLTGQSDPYEVAK-SMGIFQLL---ESPKSITTTSVAQRIIANH  396 (423)
Q Consensus       336 ~~i~~~~~d~vv~G~-d~~~~~~~~~~~d~~~~~k-~~G~~~~i---~~~~~~Stt~Ii~RI~~~~  396 (423)
                      ............... .+....+ ......+.... ..-....+   .....+|+|.|.++|..+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~i~~g~  139 (163)
T d1o6ba_          75 DYARRKNAKAILRGLRAVSDFEY-EMQGTSVNRVLDESIETFFMMANNQYSFLSSSIVKEVARYDG  139 (163)
T ss_dssp             HHHHHTTCSEEEEEECSGGGHHH-HHHHHHHHHHHCTTSEEEEEECCSTTTTCCHHHHHHHHHTTC
T ss_pred             ccceecCcceeeeeecCcchhhh-HHHHHHHHHHhCcccceEeccccchhhccCHHHHHHHHHcCC
Confidence            444444444333221 1111000 00000000011 11122222   2235799999999997754

>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermus thermophilus [TaxId: 274]

Probab=98.92  E-value=1.3e-09  Score=93.01  Aligned_cols=55  Identities=20%  Similarity=0.401  Sum_probs=41.0

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHH
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV  316 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v  316 (423)
                      +++ +++|+|||+|.||++++++|.+.||+|++++..+..    |.. .......+|+...
T Consensus         1 Mk~-ifgGsFdP~H~GHl~ii~~a~~~~D~v~i~~~~~~~----kk~-~~~~~~~~~~~~~   55 (160)
T d1od6a_           1 MHV-VYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENPS----KRG-QYLFSAEERLAII   55 (160)
T ss_dssp             CEE-EEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECC----------CCSSCHHHHHHHH
T ss_pred             CeE-EeeeccCCcCHHHHHHHHHHHHhCCEEEEeccCCCC----ccc-cccCCHHHHHHHH
Confidence            354 889999999999999999999999999999998753    322 3455666665433

>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=1.7e-09  Score=91.78  Aligned_cols=132  Identities=17%  Similarity=0.217  Sum_probs=75.4

Q ss_pred             eEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHH-HHHHhhcccCeeEEcCCCCchH
Q 014487          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERS-LSVLACRYVDEVIIGAPWEVTK  335 (423)
Q Consensus       257 ~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~-~~v~~~~~Vd~Vvi~~p~~~~~  335 (423)
                      |+++++|+|||+|.||+.++++|.+.+|+|+|.++...   ..    ++..+..+|. .+.+......++.+........
T Consensus         1 k~AifgGsFdP~H~GHl~li~~a~~~~D~v~v~~~~~~---~~----k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (157)
T d1qjca_           1 KRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASP---SK----KPMFTLEERVALAQQATAHLGNVEVVGFSDLMA   73 (157)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEESCC---SS----CCSSCHHHHHHHHHHHTTTCTTEEEEEECSCHH
T ss_pred             CEEEEeeccCCCCHHHHHHHHHHHHhCCEeeecccCcc---cc----ccccCHHHHHHHHHHHHHHhhcccccccccccc
Confidence            57889999999999999999999999999999998664   11    3556666666 4444455566666644333334


Q ss_pred             HHHhhcCccEEEecCCcCCCCCCCCCCChHHHHHhC-C-eEEEe-CCC--CCCCHHHHHHHHHhch
Q 014487          336 DMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSM-G-IFQLL-ESP--KSITTTSVAQRIIANH  396 (423)
Q Consensus       336 ~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~-G-~~~~i-~~~--~~~Stt~Ii~RI~~~~  396 (423)
                      ........-............. ......+...... . ..+.+ .+.  ..+|+|.|.++|..+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~v~~~~~~~~~~ISST~IR~~i~~g~  138 (157)
T d1qjca_          74 NFARNQHATVLIRGLRAVADFE-YEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQG  138 (157)
T ss_dssp             HHHHHTTCCEEEEECCTTCCHH-HHHHHHHHHHHHCTTSEEEEECCCGGGTTCCHHHHHHHHHTTC
T ss_pred             chhhhhccceeeeeeccccchh-hhhHHHHHHHHhCCCceEEEeecCCCCCccCHHHHHHHHHcCC
Confidence            4433333322222211000000 0000001111111 1 22333 222  4699999999997764

>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.86  E-value=2.5e-09  Score=91.01  Aligned_cols=39  Identities=28%  Similarity=0.398  Sum_probs=36.2

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecCh
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ  294 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~  294 (423)
                      +++++++|+|||+|.||++++++|.+.+|.++|.+....
T Consensus         1 m~~Av~~GsFdPiH~GHl~i~~~a~~~~d~~~v~~~~~~   39 (157)
T d1tfua_           1 MTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNP   39 (157)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECCS
T ss_pred             CCEeEeCcCCCCCCHHHHHHHHHHHHhcChHHhhccccC
Confidence            578999999999999999999999999999999998664

>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.73  E-value=1.2e-08  Score=86.69  Aligned_cols=51  Identities=29%  Similarity=0.398  Sum_probs=40.4

Q ss_pred             EEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccCCCCCCCCHHHHHHHH
Q 014487          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV  316 (423)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v  316 (423)
                      +++.|+|||+|.||+.++++|.+.+|+|+|++.....       ++...+..++....
T Consensus         3 aifgGsFdPiH~GHl~i~~~a~~~~D~v~v~~~~~~~-------~~~~~~~~~~~~~~   53 (157)
T d1vlha_           3 AVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENPR-------KKCMFTLEERKKLI   53 (157)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEECCTT-------CCCSSCHHHHHHHH
T ss_pred             EEEeecCCCCcHHHHHHHHHHHHhcCccccccccccc-------ccccCCHHHHHHHH
Confidence            8899999999999999999999999999999986642       13445555555333

>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: FMN adenylyltransferase domain of bifunctional FAD synthetase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.57  E-value=2.1e-07  Score=80.92  Aligned_cols=132  Identities=15%  Similarity=0.143  Sum_probs=87.7

Q ss_pred             EEEcCeeccCCHHHHHHHHHHHhcC-----CEEEEEEecChhhhhccCCCCCCCCHHHHHHHHHhhcccCeeEEcCC--C
Q 014487          259 VYIDGAFDLFHAGHVEILKKARQLG-----DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAP--W  331 (423)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~g-----d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi~~p--~  331 (423)
                      |++-|.||-+|.||..+|++|++.+     .-+++.......+-..+ ...++++.++|...+..+. +|.++.+..  .
T Consensus         1 VvtiG~FDGvH~GHq~li~~~~~~a~~~~~~~~v~tf~~~p~~~~~~-~~~~l~~~~~k~~~l~~~g-~~~~l~f~~~~~   78 (157)
T d1mrza2           1 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPD-FPGLLMTVESRVEMLSRYA-RTVVLDFFRIKD   78 (157)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTT-CCCBSSCHHHHHHHHTTTS-CEEEECHHHHTT
T ss_pred             CEEEEcccchhHHHHHHHHHHHHHHHHcCCCceEeecCCCchheEec-cccccccHHHhhhhhhccc-ceeeehhhhHhh
Confidence            4567999999999999999887643     44666666555443333 2367999999999999886 565554321  1


Q ss_pred             CchHHHHhhc--CccEEEecCCcCCCCCCCCCCChHHHHHhCC-eEEEeC----CCCCCCHHHHHHHHHhc
Q 014487          332 EVTKDMITTF--NICLVVHGTVSETNTPLTGQSDPYEVAKSMG-IFQLLE----SPKSITTTSVAQRIIAN  395 (423)
Q Consensus       332 ~~~~~~i~~~--~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G-~~~~i~----~~~~~Stt~Ii~RI~~~  395 (423)
                      ..++++++++  ++..+|-|.|+.-..-  ..-+. ...+..| .+..++    ....+|||.|.+-|.+.
T Consensus        79 ls~~~Fi~~~l~~~~~ivvG~Df~FG~~--r~G~~-~~Lk~~g~~v~~i~~~~~~~~~ISST~IR~~l~~G  146 (157)
T d1mrza2          79 LTPEGFVERYLSGVSAVVVGRDFRFGKN--ASGNA-SFLRKKGVEVYEIEDVVVQGKRVSSSLIRNLVQEG  146 (157)
T ss_dssp             CCHHHHHHHHCTTCCEEEEETTCCBSGG--GCBCH-HHHHHTTCEEEEECCCEETTEECCHHHHHHHHHTT
T ss_pred             hhhhHHHHHHhhcCcEEEEecCcccccc--cccch-hhhccceeEEEeeccEeeCCcEEcHHHHHHHHHcC
Confidence            2356788776  7788999999865521  12233 3445556 444453    22459999998877553

>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.50  E-value=5.3e-07  Score=77.35  Aligned_cols=60  Identities=13%  Similarity=0.111  Sum_probs=37.8

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcCC--EEEEEEecChhhhhccCCCCCCCCHHHHHHHHHh
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA  318 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd--~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~~  318 (423)
                      .+||++++|+|||+|.||+.++++|.+.+|  .+++......   ..+. ..+.....+|..+...
T Consensus         1 ~kkIalfgGSFdP~H~GH~~ii~~a~~~~~~~~V~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~   62 (189)
T d1kama_           1 SKKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIP---PHKQ-NEDYTDSFHRVEMLKL   62 (189)
T ss_dssp             CCEEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC-------------CHHHHHHHHHH
T ss_pred             CCEEEEeccCcCCCCHHHHHHHHHHHHHcCCCEEEEEeccCC---cccc-cchhhHHHHHHHHHHh
Confidence            368999999999999999999999999986  4444443322   1122 1345556666644433

>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human (Homo sapiens), FKSG76 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Cytosolic NMN/NAMN adenylyltransferase
species: Human (Homo sapiens), FKSG76 [TaxId: 9606]

Probab=98.37  E-value=5.5e-07  Score=82.20  Aligned_cols=69  Identities=20%  Similarity=0.279  Sum_probs=47.0

Q ss_pred             eEEEEcCeeccCCHHHHHHHHHHHhcCC-----EEEEEEecChhhhhccCCCCCCCCHHHHHHHH-HhhcccCeeEEc
Q 014487          257 RVVYIDGAFDLFHAGHVEILKKARQLGD-----FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVIIG  328 (423)
Q Consensus       257 ~iv~~~G~FDl~H~GHi~~L~~A~~~gd-----~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v-~~~~~Vd~Vvi~  328 (423)
                      .+++++|+|||+|.||+.+++.|++.++     .++.++.+..  +..|.+ .+..+.++|+.|+ ++++..+.+.+.
T Consensus         5 ~vl~~~GSFdP~H~GHl~i~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~-~~~~~~~~R~~M~~la~~~~~~~~v~   79 (233)
T d1nuua_           5 VVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPV--NDTYGK-KDLAASHHRVAMARLALQTSDWIRVD   79 (233)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHHHHSSEEEEEEEEEEC--CTTCSS-SCCCCHHHHHHHHHHHGGGCSSEEEC
T ss_pred             EEEEEeeeeCccHHHHHHHHHHHHHHhCcccceeeeeEEEccC--CCCccc-CccCCHHHHHHHHHHHHhccCCEEEe
Confidence            3577899999999999999999987531     2322332211  111222 5889999999887 556667777774

>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=5.3e-06  Score=72.21  Aligned_cols=67  Identities=19%  Similarity=0.182  Sum_probs=46.2

Q ss_pred             CeEEEEcCeeccCCHHHHHHHHHHHhcC--CEEEEEEecChhhhhccCCCCCCCCHHHHH-HHHHhhcccCeeEE
Q 014487          256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERS-LSVLACRYVDEVII  327 (423)
Q Consensus       256 ~~iv~~~G~FDl~H~GHi~~L~~A~~~g--d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~-~~v~~~~~Vd~Vvi  327 (423)
                      ..+++.+|+|||+|.||+.+++.|++.+  |.|++.++.+.-   .|.  .......+|. .+...+...+.+..
T Consensus         3 ~~~AlfgGSFnP~h~GHl~~~~~a~~~~~~d~v~~~p~~~~~---~k~--~~~~~~~~~~~~~~~~~~~~~~~~~   72 (213)
T d1k4ma_           3 SLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP---HRP--QPEANSVQRKHMLELAIADKPLFTL   72 (213)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCT---TSC--CCSSCHHHHHHHHHHHHTTCTTEEE
T ss_pred             ccEEEEecCcCcCcHHHHHHHHHHHHHcCCCEEEEEEeCCCc---hhc--ccccchHHHHHHHHHHhhcccceee
Confidence            4678999999999999999999999864  889998887753   232  2333444444 44444444444444

>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.2e-05  Score=75.11  Aligned_cols=67  Identities=15%  Similarity=0.169  Sum_probs=48.3

Q ss_pred             eEEEEcCeeccCCHHHHHHHHHHHhcC--------CEEEEEEecChhhhhccCCCCCCCCHHHHHHHH-HhhcccCeeEE
Q 014487          257 RVVYIDGAFDLFHAGHVEILKKARQLG--------DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVII  327 (423)
Q Consensus       257 ~iv~~~G~FDl~H~GHi~~L~~A~~~g--------d~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v-~~~~~Vd~Vvi  327 (423)
                      .|++++|+|||+|.||+.+.+.|++..        |.+++.-+.+.   ..|   .++.+.++|+.|+ ++++..+.+.+
T Consensus         5 ~v~l~~GSFdP~H~GHl~ia~~a~~~l~~~~~~~~~~~~~~P~~~~---~~k---~~~~s~~~Rl~Ml~la~~~~~~~~v   78 (271)
T d1kr2a_           5 VVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDA---YKK---KGLIPAYHRVIMAELATKNSKWVEV   78 (271)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGG---GCC---TTCCCHHHHHHHHHHHTTTCSSEEE
T ss_pred             EEEEEccccCcchHHHHHHHHHHHHHHhhccccceeEEEEecCCCC---CcC---CCCCCHHHHHHHHHHHHhcCCCEEE
Confidence            466889999999999999999887532        34444434442   122   4678999999877 55788888888


Q ss_pred             cC
Q 014487          328 GA  329 (423)
Q Consensus       328 ~~  329 (423)
                      .+
T Consensus        79 s~   80 (271)
T d1kr2a_          79 DT   80 (271)
T ss_dssp             CC
T ss_pred             ee
Confidence            53

>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain {Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]

Probab=97.81  E-value=3.1e-05  Score=69.91  Aligned_cols=92  Identities=12%  Similarity=0.102  Sum_probs=58.5

Q ss_pred             EEEcCeeccCCHHHHHHHHHHHhc--CCEEEEEEecChhhhhccCCCCCCCCHHHHHHHHH-hhcccCeeEEcC-----C
Q 014487          259 VYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGA-----P  330 (423)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~--gd~LiVgv~~D~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~Vd~Vvi~~-----p  330 (423)
                      |+--|||||+|.||+.+.+.|.+.  .|.+++..+...   ..|+. .+..+...|.+++. ++..-+.+.+.+     +
T Consensus        22 v~~f~TfnP~H~GHl~ia~~a~~~~~ld~v~~iP~~~~---p~K~~-~~~~~~~~r~~m~~~a~~~~~~~~is~~E~~~~   97 (223)
T d1jhda2          22 VVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLGK---LKKGD-IPAPVRDAAIRTMAEVYFPPNTVMVTGYGFDML   97 (223)
T ss_dssp             EEEEEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEECC---CCTTC-CCHHHHHHHHHHHHHHHSCTTCEEEEEEECCCC
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHHhCcCceEEecccCC---CCcCC-CccccHHHHHHHHHHhhcCCCceeecccccccc
Confidence            444499999999999999999976  478887776554   33442 45667778876665 566555554421     1


Q ss_pred             -CCchHHHHhhc-----CccEEEecCCcCC
Q 014487          331 -WEVTKDMITTF-----NICLVVHGTVSET  354 (423)
Q Consensus       331 -~~~~~~~i~~~-----~~d~vv~G~d~~~  354 (423)
                       .+.+.+.++.+     +..+++-|.|...
T Consensus        98 ~~syt~~tl~~l~~~~~~~~~~iiG~D~~~  127 (223)
T d1jhda2          98 YAGPREAVLHAYFRQNMGATHFIIGRDHAG  127 (223)
T ss_dssp             CCTHHHHHHHHHHHHHTTCSEEEECTTTTC
T ss_pred             CCCcHHHHHHHHHHhCCcceEEEEeecccc
Confidence             12333433332     4567777877543

>d1v47a2 c.26.1.5 (A:136-349) ATP sulfurylase catalytic domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.01  E-value=0.045  Score=48.60  Aligned_cols=93  Identities=19%  Similarity=0.157  Sum_probs=60.2

Q ss_pred             eEEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCc---c-ccEEEecCCcccc
Q 014487           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---W-VDEVIANAPYAIT  141 (423)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~---~-VD~vi~~~p~~~~  141 (423)
                      ++|++.=+=+++|.||..+++.|.+.++.|++-+.-    -. +.+-=++.+-|.+..+.+.   . -+.++. .|+...
T Consensus        21 ~~v~aFqTrnp~Hr~He~i~~~a~~~~~~lli~p~v----G~-~k~gd~~~~~r~~~y~~~~~~~~~~~~v~l-~~~~~~   94 (214)
T d1v47a2          21 RKVVAFQTRNAPHRAHEYLIRLGLELADGVLVHPIL----GA-KKPDDFPTEVIVEAYQALIRDFLPQERVAF-FGLATP   94 (214)
T ss_dssp             CSEEEEEESSCCCHHHHHHHHHHHHHSSEEEEEEBC----SC-CCTTSCCHHHHHHHHHHHHHHHSCGGGEEE-CCBCSC
T ss_pred             CEEEEEecCCCCCHHHHHHHHHHHHhcCCEEEeeee----cc-CCccccCHHHHHHHHHHHHhhcCCCCeEEE-EecCcc
Confidence            356664566999999999999999999976654432    12 2234566677776655421   1 234443 333222


Q ss_pred             -------HHHHHHHH-hhcCccEEEEcCCCC
Q 014487          142 -------EQFMNRLF-NEHKIDYIIHGDDPC  164 (423)
Q Consensus       142 -------~efl~~ll-~~~~~d~VV~G~D~~  164 (423)
                             +..+..++ +.++|+.+++|.|..
T Consensus        95 m~yaGPrEA~lhAiirkN~GcthfiVGRDHA  125 (214)
T d1v47a2          95 MRYAGPKEAVFHALVRKNFGATHFLVGRDHA  125 (214)
T ss_dssp             CCCCTHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred             cccccchHHHHHHHHHHhcCCCeEEEcCcCC
Confidence                   46666655 569999999999975

>d1g8fa2 c.26.1.5 (A:169-389) ATP sulfurylase catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.58  E-value=0.096  Score=46.57  Aligned_cols=94  Identities=15%  Similarity=0.122  Sum_probs=59.2

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhc-CeeEEEEecchhhhccCCCCCCcHHHHHHHHhcCc---cccEEEecCCccc
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---WVDEVIANAPYAI  140 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~---~VD~vi~~~p~~~  140 (423)
                      -++|++.=+=+++|.||..++++|.+.+ +.|+|-+.    +-..| +-=++.+-|.+..+.+.   .-+.++. .++..
T Consensus        20 ~~~v~afqTrnp~Hr~He~i~~~a~~~~~~~lli~p~----vg~~k-~gd~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~   93 (221)
T d1g8fa2          20 WDRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPV----VGLTK-PGDIDHHTRVRVYQEIIKRYPNGIAFL-SLLPL   93 (221)
T ss_dssp             CCCEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEEEB----CSBCS-TTCCCHHHHHHHHHHHGGGSCTTSEEE-CCBCC
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHHhcCCCEEEeec----ccCCc-cccCCHHHHHHHHHHHHHhcCCCeEEE-Eeccc
Confidence            3467777788999999999999987764 44444222    22222 23356677776665421   1233444 33332


Q ss_pred             c-------HHHHHHHH-hhcCccEEEEcCCCC
Q 014487          141 T-------EQFMNRLF-NEHKIDYIIHGDDPC  164 (423)
Q Consensus       141 ~-------~efl~~ll-~~~~~d~VV~G~D~~  164 (423)
                      +       +..+..++ +.++|..+++|.|..
T Consensus        94 ~m~yaGPrEA~lhAiirkN~GcthfiVGRDHA  125 (221)
T d1g8fa2          94 AMRMSGDREAVWHAIIRKNYGASHFIVGRDHA  125 (221)
T ss_dssp             BCCCCHHHHHHHHHHHHHHTTCSEEECCTTTT
T ss_pred             cccccchHHHHHHHHHHHhcCCCeeEeccccc
Confidence            2       46666655 569999999999975

>d1x6va2 c.26.1.5 (A:390-624) ATP sulfurylase catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.15  Score=45.65  Aligned_cols=96  Identities=14%  Similarity=0.008  Sum_probs=58.0

Q ss_pred             CeEEEEecccCcCcHHHHHHHHHHHHhc--C---eeEEEEecchhhhccCCCCCCcHHHHHH----HHhcC-ccccEEEe
Q 014487           65 RVRVYMDGCFDLMHYGHANALRQAKALG--D---ELVVGVVSDEEIIANKGPPVLSMEERLA----LVSGL-KWVDEVIA  134 (423)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d---~LiVgV~sd~~i~~~K~~pi~t~eER~~----~l~~~-~~VD~vi~  134 (423)
                      -++|++.=+=+++|.||..+++.|.+.+  +   .-.+.+++  .+-. +.+-=++.+-|.+    ++..- -.-+.++.
T Consensus        23 w~~VvaFqTRNp~HraHe~i~~~a~~~~~~~~~~~~~lli~P--vvG~-~k~gD~~~~~~~~~y~~l~~~~~~~~~~~~l   99 (235)
T d1x6va2          23 ADAVSAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHP--LGGW-TKDDDVPLMWRMKQHAAVLEEGVLNPETTVV   99 (235)
T ss_dssp             CSEEEEEEESSCCCHHHHHHHHHHHHHHHHTTCSSEEEEEEE--BCSC-CCTTSCCHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred             CCeEEEeecCCCCcHHHHHHHHHHHHHHHhccccCCeEEEee--cccc-CCCCccChHHHHHHHHHHHHhccCCCCcEEE
Confidence            3467777788999999999999987753  1   11233333  1212 2233466677765    33331 12344443


Q ss_pred             cCCcccc-------HHHHHHHH-hhcCccEEEEcCCCC
Q 014487          135 NAPYAIT-------EQFMNRLF-NEHKIDYIIHGDDPC  164 (423)
Q Consensus       135 ~~p~~~~-------~efl~~ll-~~~~~d~VV~G~D~~  164 (423)
                       .++...       +..+..++ +.++|..+++|.|..
T Consensus       100 -~~l~~~mryAGPrEAllhAiiRkN~GcThfiVGRDHA  136 (235)
T d1x6va2         100 -AIFPSPMMYAGPTEVQWHCRARMVAGANFYIVGRDPA  136 (235)
T ss_dssp             -CCBCCCCCCCHHHHHHHHHHHHHHTTCSEEEECSSTT
T ss_pred             -EeccccccccccHHHHHHHHHHHhcCCCeEEEcCccc
Confidence             223222       56677766 569999999999985

>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Thermus thermophilus [TaxId: 274]

Probab=95.44  E-value=0.021  Score=52.74  Aligned_cols=67  Identities=21%  Similarity=0.181  Sum_probs=51.4

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhh-ccCC--CCCCcHHHHHHHHhcCccccEEEe
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~-~~K~--~pi~t~eER~~~l~~~~~VD~vi~  134 (423)
                      ++-+..+-=.+|-||+.|+++|++.++.++|.+.-+|.=. ....  ...-+.++=+++++.. +||.|+.
T Consensus        18 ~i~~VPTMGaLH~GHlsLi~~a~~~~~~vvvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~-~vd~vf~   87 (276)
T d1v8fa_          18 GVGFVPTMGYLHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEA-GVDLLFA   87 (276)
T ss_dssp             CEEEEEECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHT-TCSEEEC
T ss_pred             CEEEEcCCccHhHHHHHHHHHHHHhCCCEEEEEEecCccCCCcchhhccccchhhhHHHHHhC-CCCEEEe
Confidence            3666777788999999999999999999999988777422 2122  3345667778889886 8999985

>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.023  Score=52.66  Aligned_cols=67  Identities=24%  Similarity=0.239  Sum_probs=50.1

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHHhcCeeEEEEecchhhh-ccCC--CCCCcHHHHHHHHhcCccccEEEe
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~-~~K~--~pi~t~eER~~~l~~~~~VD~vi~  134 (423)
                      ++-+..+-=.+|-||..|+++|++.++.++|.+.-+|.=. ....  ...-+.++=+++++.. +||.|+.
T Consensus        23 ~ig~VPTMGaLH~GHlsLi~~A~~~~~~vvvSIFVNP~QF~~~eD~~~YPr~l~~D~~~l~~~-~vd~vf~   92 (282)
T d1ihoa_          23 RVALVPTMGNLHDGHMKLVDEAKARADVVVVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKR-KVDLVFA   92 (282)
T ss_dssp             CEEEEEECSCCCHHHHHHHHHHHHHCSEEEEEECCCGGGCSSHHHHHHSCCCHHHHHHHHHHT-TCSEEEC
T ss_pred             cEEEEcCCcchhHHHHHHHHHHHHhCCcEEEEEEecCccCcccchhhccCccHHHHHHHHHhc-CCcEEEe
Confidence            5666677788999999999999999999999887666311 1111  2334677778888886 8999885

>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Thermus thermophilus [TaxId: 274]

Probab=94.53  E-value=0.035  Score=51.20  Aligned_cols=69  Identities=17%  Similarity=0.334  Sum_probs=45.5

Q ss_pred             eEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecChhhhhccC--CCCCCCCHHHHHHHHHhhcccCeeEEc
Q 014487          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRG--SYHPIMHLHERSLSVLACRYVDEVIIG  328 (423)
Q Consensus       257 ~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~~v~~~Kg--~~~pi~~~~ER~~~v~~~~~Vd~Vvi~  328 (423)
                      ++++++ |==-+|.||++++++|++.+|.+||.|.-++.=...+.  .++|- ++++=...+.+. .||.|+..
T Consensus        18 ~i~~VP-TMGaLH~GHlsLi~~a~~~~~~vvvSIFVNP~QF~~~eD~~~YPr-~~~~D~~~l~~~-~vd~vf~P   88 (276)
T d1v8fa_          18 GVGFVP-TMGYLHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPR-DLERDRALLQEA-GVDLLFAP   88 (276)
T ss_dssp             CEEEEE-ECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGCCTTSSTTTSCC-CHHHHHHHHHHT-TCSEEECC
T ss_pred             CEEEEc-CCccHhHHHHHHHHHHHHhCCCEEEEEEecCccCCCcchhhcccc-chhhhHHHHHhC-CCCEEEec
Confidence            455543 23348999999999999999999999985542111110  13565 566666666665 48887764

>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.029  Score=51.96  Aligned_cols=67  Identities=22%  Similarity=0.381  Sum_probs=45.6

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHhcCCEEEEEEecCh-------hhhhccCCCCCCCCHHHHHHHHHhhcccCeeEE
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ-------IVSEHRGSYHPIMHLHERSLSVLACRYVDEVII  327 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~~gd~LiVgv~~D~-------~v~~~Kg~~~pi~~~~ER~~~v~~~~~Vd~Vvi  327 (423)
                      +++|++++ |==-+|.||++++++|++.+|.+||.|.-++       +...     +|- +++.=...+.+. .||.|++
T Consensus        21 g~~ig~VP-TMGaLH~GHlsLi~~A~~~~~~vvvSIFVNP~QF~~~eD~~~-----YPr-~l~~D~~~l~~~-~vd~vf~   92 (282)
T d1ihoa_          21 GKRVALVP-TMGNLHDGHMKLVDEAKARADVVVVSIFVNPMQFDRPEDLAR-----YPR-TLQEDCEKLNKR-KVDLVFA   92 (282)
T ss_dssp             TCCEEEEE-ECSCCCHHHHHHHHHHHHHCSEEEEEECCCGGGCSSHHHHHH-----SCC-CHHHHHHHHHHT-TCSEEEC
T ss_pred             CCcEEEEc-CCcchhHHHHHHHHHHHHhCCcEEEEEEecCccCcccchhhc-----cCc-cHHHHHHHHHhc-CCcEEEe
Confidence            45666554 2334899999999999999999999997433       2221     454 555556666654 4887776


Q ss_pred             cC
Q 014487          328 GA  329 (423)
Q Consensus       328 ~~  329 (423)
                      +.
T Consensus        93 P~   94 (282)
T d1ihoa_          93 PS   94 (282)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.61  E-value=0.038  Score=51.23  Aligned_cols=67  Identities=22%  Similarity=0.242  Sum_probs=44.5

Q ss_pred             EEEEecccCcCcHHHHHHHHHHHH-hcCeeEEEEecchh-hhccCC--CCCCcHHHHHHHHhcCccccEEEe
Q 014487           67 RVYMDGCFDLMHYGHANALRQAKA-LGDELVVGVVSDEE-IIANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (423)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~-~~d~LiVgV~sd~~-i~~~K~--~pi~t~eER~~~l~~~~~VD~vi~  134 (423)
                      ++-+.-+--.+|-||+.|+++|++ .++.++|.+.-+|. ......  ...-+.++=+++++.. +||.++.
T Consensus        31 ~i~~VPTMGaLH~GHlsLi~~a~~~~~~~vvvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~-~vd~vf~  101 (286)
T d2a84a1          31 RVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAE-GVEIAFT  101 (286)
T ss_dssp             CEEEEEECSSCCHHHHHHHHHHHTSTTCEEEEEECCCCCCTTC----------CCSHHHHHHHT-TCCEEEC
T ss_pred             eEEEEeCCcchhHHHHHHHHHHhhcCCCEEEEEEeecccccCccccCccCCcchhhhhHHHhcc-CCceeec
Confidence            466778888999999999999997 68888888876653 111111  1222334456667765 8998875

>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.69  E-value=0.14  Score=47.35  Aligned_cols=38  Identities=24%  Similarity=0.636  Sum_probs=30.6

Q ss_pred             CCeEEEEcCeeccCCHHHHHHHHHHHh-cCCEEEEEEecC
Q 014487          255 NARVVYIDGAFDLFHAGHVEILKKARQ-LGDFLLVGIYTD  293 (423)
Q Consensus       255 ~~~iv~~~G~FDl~H~GHi~~L~~A~~-~gd~LiVgv~~D  293 (423)
                      ++++++++ +=--+|.||+.++++|++ .+|.+||.|.-+
T Consensus        29 g~~i~~VP-TMGaLH~GHlsLi~~a~~~~~~~vvvSIFVN   67 (286)
T d2a84a1          29 GRRVMLVP-TMGALHEGHLALVRAAKRVPGSVVVVSIFVN   67 (286)
T ss_dssp             TCCEEEEE-ECSSCCHHHHHHHHHHHTSTTCEEEEEECCC
T ss_pred             CCeEEEEe-CCcchhHHHHHHHHHHhhcCCCEEEEEEeec
Confidence            46676665 455699999999999997 799999999643