Citrus Sinensis ID: 014531

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
MVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPIIVIGSIVIAIFSSIFIGLYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPRYRQKKVHSSSELPVGGNQVAGGKFTSASADAPAMLMPSLAHSRSVREAIQEVKMVQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRPETSRSDSIRSVFSIENV
cccccccccccccHHHHHHHHccccccccEEEEEEcccHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
ccccHHHHHHccHHHHHHHHHHccccccccEEEEEEccHHHEHHEEEEEccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccEHHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHccccEEEEEccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcc
mvrdfadlcyhsyPIFLKeiresphsnelqplrlfhvpgCIIAGllglvvdiPLYTVIAVIKSPYMLFKGWFRLLHDLIsregpfletacipiagltiLLWPIIVIGSIVIAIFSSIFIGLYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYlregtilpkpryrqkkvhssselpvggnqvaggkftsasadapamlmpslAHSRSVREAIQEVKMVQIWVNMMRSCETRGrelldadvitpaDLKDWLKAkcvneeaivgfglpCYSFLQTLLYSIkagsgglllpdsveithlnrpnnklldwfFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERmeawdnggllpeDALRAAQIQGISRRMIGLIrsvskfptyRRRFRQVVKALVSYSesrpetsrsdsirSVFSIENV
MVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPIIVIGSIVIAIFSSIFIGLYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPRYRQKkvhssselpvggnqVAGGKFTSASADAPAMLMPSLAHSRSVREAIQEVKMVQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVlkltepevrYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGlirsvskfptyrrrFRQVVKALvsysesrpetsrsdsirsvfsienv
MVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPiivigsiviaifssifigLYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPRYRQKKVHSSSELPVGGNQVAGGKFTSASADAPAMLMPSLAHSRSVREAIQEVKMVQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRPETSRSDSIRSVFSIENV
****FADLCYHSYPIFLKEIRES*HSNELQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPIIVIGSIVIAIFSSIFIGLYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILP*************************************************EAIQEVKMVQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVS***********************
MVRDFADLCYHSYPIFLKEIRE******LQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPIIVIGSIVIAIFSSIFIGLYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKP*************************************************IQEVKMVQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE***************LRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVS********************E*V
MVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPIIVIGSIVIAIFSSIFIGLYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPR***********LPVGGNQVAGGKFTSASADAPAMLMPSLAHSRSVREAIQEVKMVQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL****************RSVFSIENV
MVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPIIVIGSIVIAIFSSIFIGLYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPRYR***************************************SRSVREAIQEVKMVQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRP********RSV******
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPIIVIGSIVIAIFSSIFIGLYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPRYRQKKVHSSSELPVGGNQVAGGKFTSASADAPAMLMPSLAHSRSVREAIQEVKMVQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRPETSRSDSIRSVFSIENV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query423 2.2.26 [Sep-21-2011]
Q8GUM4588 Uncharacterized membrane no no 0.936 0.673 0.393 5e-83
>sp|Q8GUM4|Y3739_ARATH Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=2 Back     alignment and function desciption
 Score =  308 bits (789), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 163/414 (39%), Positives = 242/414 (58%), Gaps = 18/414 (4%)

Query: 1   MVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAV 60
           +VRDF D+C+HSY   + E+++S    +   +RL  +PG ++  +LG++VD P+ +++A+
Sbjct: 145 VVRDFKDVCFHSYFSLMDELKQSCPDRKYYEIRLLQLPGALVVSVLGILVDPPVISLVAI 204

Query: 61  IKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPIIVIGSIVIAIFSSIFIG 120
            KSPYMLFKGW RL HDLI REGPFLET C+PIAGL ILLWP+ V G+++ ++ SSIF+G
Sbjct: 205 CKSPYMLFKGWHRLFHDLIGREGPFLETMCVPIAGLAILLWPLAVTGAVIGSVISSIFLG 264

Query: 121 LYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPRYRQKKVHSSSELP 180
            Y  VV YQE SF  G+ Y++A V+ +DEY+ D L L EG+  P+P+YR+K    +   P
Sbjct: 265 AYAGVVSYQESSFYYGLCYIVASVSIYDEYSTDILDLPEGSCFPRPKYRRKDEEPT---P 321

Query: 181 VGGNQVAGGKFTSASADAPAMLMPSLAHSRSVREAIQEVKMVQIWVNMMRSCETRGRELL 240
             G     G   +AS+              SVR  + ++K + +   +   C   G  L 
Sbjct: 322 FSGPVPRLGSVKNASS----------MRGGSVRVPMIDIKPLDLLNELFVECRRYGEVLA 371

Query: 241 DADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSV-EITH 299
              +I   D+++   A+      ++  GLP Y  L  +L S+KA S GLLL D V EIT 
Sbjct: 372 TKGLINSKDIEE---ARSSKGSQVISVGLPAYGLLYEILRSVKANSSGLLLSDGVTEITT 428

Query: 300 LNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPE 359
           +NRP +   DWF NP ++LKEQ+    L+E E  YL ++VL     ER+++ +     P 
Sbjct: 429 MNRPKDVFFDWFLNPFLILKEQMKATNLSEEEEEYLGRLVLLFGDPERLKSSNAISASPP 488

Query: 360 DALRA-AQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRPETSRSD 412
              R  A++   +RRM GL ++VS++PT+RR F  +VK L    + +   S  D
Sbjct: 489 LTERKRAELDAFARRMQGLTKTVSRYPTFRRHFVALVKKLSEDLDLKDNNSAKD 542

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query423
224094386 570 predicted protein [Populus trichocarpa] 0.992 0.736 0.699 1e-178
356565614 594 PREDICTED: uncharacterized membrane prot 0.962 0.685 0.720 1e-177
358348218 597 Membrane protein, putative [Medicago tru 0.969 0.686 0.673 1e-170
225438680 559 PREDICTED: uncharacterized membrane prot 0.962 0.728 0.696 1e-170
255565138 561 conserved hypothetical protein [Ricinus 0.900 0.679 0.739 1e-168
79497780 569 uncharacterized protein [Arabidopsis tha 0.983 0.731 0.669 1e-161
52354427 569 hypothetical protein AT4G37030 [Arabidop 0.983 0.731 0.664 1e-160
358349420 532 Membrane protein, putative [Medicago tru 0.879 0.699 0.686 1e-156
297798176 569 hypothetical protein ARALYDRAFT_912643 [ 1.0 0.743 0.665 1e-156
115458664 583 Os04g0449500 [Oryza sativa Japonica Grou 0.983 0.713 0.638 1e-154
>gi|224094386|ref|XP_002310151.1| predicted protein [Populus trichocarpa] gi|222853054|gb|EEE90601.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 296/423 (69%), Positives = 356/423 (84%), Gaps = 3/423 (0%)

Query: 1   MVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAV 60
           +V DFAD+C HSYP++LKE+RES  SNE++ LRL HVPGCIIAGL+GL+VD+PL+  IA+
Sbjct: 151 VVTDFADICCHSYPLYLKELRESSASNEIRTLRLIHVPGCIIAGLVGLIVDVPLFAAIAI 210

Query: 61  IKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPIIVIGSIVIAIFSSIFIG 120
           IKSPYMLFKGW+RLLHDLI REGPFLETACIPIAGLTILLWP++V+GS+++ IFSSIFIG
Sbjct: 211 IKSPYMLFKGWYRLLHDLIGREGPFLETACIPIAGLTILLWPLVVVGSVLVTIFSSIFIG 270

Query: 121 LYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPRYRQKKVHSSSELP 180
           LY SV++YQERSF R VAYVIAMVAEFDEYTND LYLREGT LPKP+Y++K    SSEL 
Sbjct: 271 LYASVILYQERSFWRAVAYVIAMVAEFDEYTNDRLYLREGTFLPKPKYQKKGTSHSSELS 330

Query: 181 VGGNQVAGGKFTSASADAPAMLMPSLAHSRSVREAIQEVKMVQIWVNMMRSCETRGRELL 240
           VGG+     KF+S   +APAML+PS AHS+SVRE +QEVKMVQ+W  MMRSCE RGR+LL
Sbjct: 331 VGGSL---AKFSSVHVEAPAMLVPSFAHSKSVRETVQEVKMVQVWGVMMRSCEMRGRDLL 387

Query: 241 DADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSVEITHL 300
           D+  IT ADL ++LKA+  NE +++  GLPCYSFLQ+LL SIKAGS G LL D  EITH 
Sbjct: 388 DSGAITLADLSNYLKARGGNEASVICVGLPCYSFLQSLLNSIKAGSDGFLLSDGTEITHH 447

Query: 301 NRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPED 360
           NRPN+KL DWFF P+MVLKEQI V+KL E E R+L++VVL+G+ T+RME WDNG L+P++
Sbjct: 448 NRPNDKLFDWFFQPLMVLKEQIRVIKLEEGEERFLQRVVLYGNDTQRMETWDNGSLVPQE 507

Query: 361 ALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRPETSRSDSIRSVFSI 420
           ALRAAQIQGI+RRMIG+IR +SKFPTYRRRFRQVVKAL++Y   +   +RS S+RSV SI
Sbjct: 508 ALRAAQIQGITRRMIGMIRGISKFPTYRRRFRQVVKALIAYYAEKEGVTRSSSMRSVASI 567

Query: 421 ENV 423
           ENV
Sbjct: 568 ENV 570

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356565614|ref|XP_003551034.1| PREDICTED: uncharacterized membrane protein At3g27390-like [Glycine max] Back     alignment and taxonomy information
>gi|358348218|ref|XP_003638145.1| Membrane protein, putative [Medicago truncatula] gi|358349418|ref|XP_003638734.1| Membrane protein, putative [Medicago truncatula] gi|355504080|gb|AES85283.1| Membrane protein, putative [Medicago truncatula] gi|355504669|gb|AES85872.1| Membrane protein, putative [Medicago truncatula] Back     alignment and taxonomy information
>gi|225438680|ref|XP_002277444.1| PREDICTED: uncharacterized membrane protein At3g27390 [Vitis vinifera] gi|296082433|emb|CBI21438.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255565138|ref|XP_002523561.1| conserved hypothetical protein [Ricinus communis] gi|223537123|gb|EEF38756.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|79497780|ref|NP_195420.2| uncharacterized protein [Arabidopsis thaliana] gi|61742737|gb|AAX55189.1| hypothetical protein At4g37030 [Arabidopsis thaliana] gi|332661339|gb|AEE86739.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|52354427|gb|AAU44534.1| hypothetical protein AT4G37030 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|358349420|ref|XP_003638735.1| Membrane protein, putative [Medicago truncatula] gi|355504670|gb|AES85873.1| Membrane protein, putative [Medicago truncatula] Back     alignment and taxonomy information
>gi|297798176|ref|XP_002866972.1| hypothetical protein ARALYDRAFT_912643 [Arabidopsis lyrata subsp. lyrata] gi|297312808|gb|EFH43231.1| hypothetical protein ARALYDRAFT_912643 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|115458664|ref|NP_001052932.1| Os04g0449500 [Oryza sativa Japonica Group] gi|38344840|emb|CAE01571.2| OSJNBa0064H22.21 [Oryza sativa Japonica Group] gi|113564503|dbj|BAF14846.1| Os04g0449500 [Oryza sativa Japonica Group] gi|116310074|emb|CAH67095.1| H0818E04.12 [Oryza sativa Indica Group] gi|125548502|gb|EAY94324.1| hypothetical protein OsI_16092 [Oryza sativa Indica Group] gi|125590553|gb|EAZ30903.1| hypothetical protein OsJ_14979 [Oryza sativa Japonica Group] gi|215713425|dbj|BAG94562.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query423
TAIR|locus:2114960569 AT4G37030 "AT4G37030" [Arabido 0.995 0.739 0.637 5.6e-139
TAIR|locus:2135748575 AT4G12680 "AT4G12680" [Arabido 0.914 0.673 0.439 1.2e-81
TAIR|locus:2168803586 AT5G40640 [Arabidopsis thalian 0.945 0.682 0.391 9.6e-73
TAIR|locus:2086726588 AT3G27390 "AT3G27390" [Arabido 0.936 0.673 0.376 1.8e-71
TAIR|locus:2114960 AT4G37030 "AT4G37030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1360 (483.8 bits), Expect = 5.6e-139, P = 5.6e-139
 Identities = 269/422 (63%), Positives = 321/422 (76%)

Query:     1 MVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAV 60
             +V DFAD CYHSYP++LKE+RESP S+ELQ LRL HVPGCII G+LGLV+DIPL+T IAV
Sbjct:   146 VVTDFADFCYHSYPLYLKELRESPVSDELQTLRLIHVPGCIIVGILGLVIDIPLFTAIAV 205

Query:    61 IKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPXXXXXXXXXXXXXXXXXX 120
             IKSPY+L KGW+RL  D I+REGPFLE ACIP+AGLT+LLWP                  
Sbjct:   206 IKSPYLLLKGWYRLAQDAINREGPFLEIACIPVAGLTVLLWPIVVIGFILVTIFSSIFVG 265

Query:   121 LYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPRYRQKKVHSSSELP 180
             LYG+VVV+QERSFRRGV+YVIA+V EFDEYTNDWLYLREGTI PKPRYR  +   SSE+ 
Sbjct:   266 LYGAVVVFQERSFRRGVSYVIAVVGEFDEYTNDWLYLREGTIFPKPRYRMGRGSFSSEVS 325

Query:   181 VGGNQVAGGKFTSA-SADAPAMLMPSLAHSRSVREAIQEVKMVQIWVNMMRSCETRGREL 239
             V  +     +  S+ S DAPAML+PSL HS SVREAIQEV+MVQIW +MM   E +G+EL
Sbjct:   326 VIVHPSDVTRVNSSGSVDAPAMLVPSLVHSVSVREAIQEVRMVQIWEHMMGWFEMQGKEL 385

Query:   240 LDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSVEITH 299
             LDA+V+TP DL + LK +  NE +I+  GLP Y+ L TLL SIKAG  G+LL D  E+TH
Sbjct:   386 LDAEVLTPTDLYESLKGRHGNESSIINVGLPSYALLHTLLSSIKAGVHGVLLLDGSEVTH 445

Query:   300 LNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPE 359
             LNRP +K LDW FNPIMVLK+QI  LKL E EV+YLEKVVLFG+  +RMEAWDN    P+
Sbjct:   446 LNRPQDKFLDWVFNPIMVLKDQIRALKLGESEVKYLEKVVLFGNHEQRMEAWDNHSNPPQ 505

Query:   360 DALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRPETSRSDSIRSVFS 419
             + LR AQIQGISRRM+G++RSVSK PTYRRRFRQVVKAL++Y   +   +R+ S+ S   
Sbjct:   506 ENLRTAQIQGISRRMMGMVRSVSKLPTYRRRFRQVVKALITYYSEKQGLNRTGSMSSGDF 565

Query:   420 IE 421
             IE
Sbjct:   566 IE 567
GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2135748 AT4G12680 "AT4G12680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168803 AT5G40640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086726 AT3G27390 "AT3G27390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 423
cd06941195 NR_LBD_DmE78_like The ligand binding domain of Dro 94.29
smart00430163 HOLI Ligand binding domain of hormone receptors. 93.71
cd06940189 NR_LBD_REV_ERB The ligand binding domain of REV-ER 92.33
cd06944237 NR_LBD_Ftz-F1_like The ligand binding domain of FT 91.64
cd06931222 NR_LBD_HNF4_like The ligand binding domain of hept 91.46
cd07069241 NR_LBD_Lrh-1 The ligand binding domain of the live 90.8
cd06937231 NR_LBD_RAR The ligand binding domain (LBD) of reti 90.16
cd06945239 NR_LBD_Nurr1_like The ligand binding domain of Nur 89.94
cd06943207 NR_LBD_RXR_like The ligand binding domain of the r 89.43
cd06938231 NR_LBD_EcR The ligand binding domain (LBD) of the 89.24
cd06930165 NR_LBD_F2 Ligand-binding domain of nuclear recepto 89.14
cd07075248 NR_LBD_MR Ligand binding domain of the mineralocor 89.0
cd06935243 NR_LBD_TR The ligand binding domain of thyroid hor 88.3
PF00104203 Hormone_recep: Ligand-binding domain of nuclear ho 87.88
cd07076247 NR_LBD_GR Ligand binding domain of the glucocortic 86.14
cd06948236 NR_LBD_COUP-TF Ligand binding domain of chicken ov 85.78
cd06950206 NR_LBD_Tlx_PNR_like The ligand binding domain of T 84.86
cd06942191 NR_LBD_Sex_1_like The ligand binding domain of Cae 83.74
cd06929174 NR_LBD_F1 Ligand-binding domain of nuclear recepto 82.74
cd07070237 NR_LBD_SF-1 The ligand binding domain of nuclear r 82.72
cd06157168 NR_LBD The ligand binding domain of nuclear recept 82.19
cd06932259 NR_LBD_PPAR The ligand binding domain of peroxisom 81.39
cd06949235 NR_LBD_ER Ligand binding domain of Estrogen recept 81.31
cd06947246 NR_LBD_GR_Like Ligand binding domain of nuclear ho 80.45
cd07071238 NR_LBD_Nurr1 The ligand binding domain of Nurr1, a 80.07
>cd06941 NR_LBD_DmE78_like The ligand binding domain of Drosophila ecdysone-induced protein 78, a member of the nuclear receptor superfamily Back     alignment and domain information 
Probab=94.29  E-value=0.37  Score=43.94  Aligned_cols=112  Identities=16%  Similarity=0.220  Sum_probs=72.6

Q ss_pred             HHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhhhhHHHHHHHHHhccCChhHHHHHHHhhhcCCCccccccccC
Q 014531          274 FLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDN  353 (423)
Q Consensus       274 lL~~LL~SaKa~S~Glll~D~~EiT~~NrPkd~~fDWff~PllvlKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~  353 (423)
                      +|+ +-++...+++++.+.||..++..+-......+ +.+++.-+=++++.++++++|=.||+-++|++.|...      
T Consensus        49 ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~ld~~E~allkAi~Lf~pd~~g------  120 (195)
T cd06941          49 LVR-ISRLINSKSGSITFDDGISISRQQLDIIYDSD-FVKALFEFSDSFNSLGLSDTEVALFCAVVLLSPDRIG------  120 (195)
T ss_pred             HHH-HHHHHcCCCCeEEecCCeEeeHHHHHhccchH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCCCCC------
Confidence            444 44677778888999999776643321100012 4567777888999999999999999999999977533      


Q ss_pred             CCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 014531          354 GGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL  398 (423)
Q Consensus       354 ~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L  398 (423)
                        .-..+.+.+.|= .+..=|+.-+.  +++|....||-+++..|
T Consensus       121 --l~~~~~Ve~lq~-~~~~aL~~~i~--~~~p~~~~rf~~Ll~~L  160 (195)
T cd06941         121 --LSEPKKVAILQD-RVLEALKVQVS--RNRPAEAQLFASLLMKI  160 (195)
T ss_pred             --CCCHHHHHHHHH-HHHHHHHHHHH--hhCCCcccHHHHHHHHh
Confidence              333445555441 11222333333  46788888999887644

The ligand binding domain (LBD) of Drosophila ecdysone-induced protein 78 (E78) like: Drosophila ecdysone-induced protein 78 (E78) is a transcription factor belonging to the nuclear receptor superfamily. E78 is a product of the ecdysone-inducible gene found in an early late puff locus at position 78C during the onset of Drosophila metamorphosis. Two isoforms of E78, E78A and E78B, are expressed from two nested transcription units. An E78 orthologue from the Platyhelminth Schistosoma mansoni (SmE78) has also been identified. It is the first E78 orthologue known outside of the molting animals--the Ecdysozoa. SmE78 may be involved in transduction of an ecdysone signal in S. mansoni, consistent with its function in Drosophila. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, E78-like receptors ha
>smart00430 HOLI Ligand binding domain of hormone receptors Back     alignment and domain information
>cd06940 NR_LBD_REV_ERB The ligand binding domain of REV-ERB receptors, members of the nuclear receptor superfamily Back     alignment and domain information
>cd06944 NR_LBD_Ftz-F1_like The ligand binding domain of FTZ-F1 like nuclear receptors Back     alignment and domain information
>cd06931 NR_LBD_HNF4_like The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes Back     alignment and domain information
>cd07069 NR_LBD_Lrh-1 The ligand binding domain of the liver receptor homolog-1, a member of nuclear receptor superfamily, Back     alignment and domain information
>cd06937 NR_LBD_RAR The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily Back     alignment and domain information
>cd06945 NR_LBD_Nurr1_like The ligand binding domain of Nurr1 and related nuclear receptor proteins, members of nuclear receptor superfamily Back     alignment and domain information
>cd06943 NR_LBD_RXR_like The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily Back     alignment and domain information
>cd06938 NR_LBD_EcR The ligand binding domain (LBD) of the Ecdysone receptor, a member of the nuclear receptors super family Back     alignment and domain information
>cd06930 NR_LBD_F2 Ligand-binding domain of nuclear receptor family 2 Back     alignment and domain information
>cd07075 NR_LBD_MR Ligand binding domain of the mineralocorticoid receptor, a member of the nuclear receptor superfamily Back     alignment and domain information
>cd06935 NR_LBD_TR The ligand binding domain of thyroid hormone receptor, a members of a superfamily of nuclear receptors Back     alignment and domain information
>PF00104 Hormone_recep: Ligand-binding domain of nuclear hormone receptor; InterPro: IPR000536 Steroid or nuclear hormone receptors constitute an important superfamily of transcription regulators that are involved in widely diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis Back     alignment and domain information
>cd07076 NR_LBD_GR Ligand binding domain of the glucocorticoid receptor, a member of the nuclear receptor superfamily Back     alignment and domain information
>cd06948 NR_LBD_COUP-TF Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family Back     alignment and domain information
>cd06950 NR_LBD_Tlx_PNR_like The ligand binding domain of Tailless-like proteins, orphan nuclear receptors Back     alignment and domain information
>cd06942 NR_LBD_Sex_1_like The ligand binding domain of Caenorhabditis elegans nuclear hormone receptor Sex-1 protein Back     alignment and domain information
>cd06929 NR_LBD_F1 Ligand-binding domain of nuclear receptor family 1 Back     alignment and domain information
>cd07070 NR_LBD_SF-1 The ligand binding domain of nuclear receptor steroidogenic factor 1, a member of nuclear receptor superfamily Back     alignment and domain information
>cd06157 NR_LBD The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators Back     alignment and domain information
>cd06932 NR_LBD_PPAR The ligand binding domain of peroxisome proliferator-activated receptors Back     alignment and domain information
>cd06949 NR_LBD_ER Ligand binding domain of Estrogen receptor, which are activated by the hormone 17beta-estradiol (estrogen) Back     alignment and domain information
>cd06947 NR_LBD_GR_Like Ligand binding domain of nuclear hormone receptors:glucocorticoid receptor, mineralocorticoid receptor , progesterone receptor, and androgen receptor Back     alignment and domain information
>cd07071 NR_LBD_Nurr1 The ligand binding domain of Nurr1, a member of conserved family of nuclear receptors Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 57.2 bits (137), Expect = 7e-09
 Identities = 52/353 (14%), Positives = 101/353 (28%), Gaps = 84/353 (23%)

Query: 121 LYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPRYRQKKVHSSSELP 180
           L+ +++  QE   ++        V E       +L     T   +P    +      +  
Sbjct: 67  LFWTLLSKQEEMVQK-------FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 181 VGGNQVAGGKFTSASADAPAMLMPSLAHSRSVREAIQEVKMVQ-IWVNMMRSCETRGREL 239
              NQV    F           +  L     +R+A+ E++  + + ++ +      G+  
Sbjct: 120 YNDNQV----F-------AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---GKTW 165

Query: 240 LDADVITPADLKD-------WLK-AKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLL 291
           +  DV     ++        WL    C + E ++         LQ LLY I         
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-------EMLQKLLYQIDPNWTSRSD 218

Query: 292 PDSVEITHLNRPNNKL---------------LD--W------FFN---PIMVLKEQISV- 324
             S     ++    +L               L           FN    I++      V 
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278

Query: 325 --LKLTEPEVRYLEKVVLFGSTTERME---AWDNGGL--LPEDALRAAQIQGISRRMIGL 377
             L         L+   +  +  E       + +     LP + L        + R + +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL------TTNPRRLSI 332

Query: 378 I-RSVSKFPTYRRRFRQV-VKALVSYSESRPETSRSDSIRSVF---SI--ENV 423
           I  S+         ++ V    L +  ES          R +F   S+   + 
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query423
1pzl_A237 Hepatocyte nuclear factor 4-alpha; transcription; 94.33
2p1t_A240 Retinoic acid receptor RXR-alpha; protein-ligand c 93.25
2nxx_A235 Ultraspiracle (USP, NR2B4); hormone receptor, APO 93.13
2iz2_A243 FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuc 92.75
3oll_A240 Estrogen receptor beta; steroid binding, phosphory 92.37
3k6p_A248 Steroid hormone receptor ERR1; estrogen related re 90.77
3ltx_A243 Estrogen receptor; constitutive, nuclear receptor, 90.27
1lbd_A282 RXR_LBD, retinoid X receptor; transcription factor 89.8
1l2j_A271 Estrogen receptor beta; nuclear receptor, transcri 89.38
3mnp_A261 Glucocorticoid receptor; protein-ligand complex, s 88.29
1yye_A268 ER-beta, estrogen receptor beta; ER-beta, nuclear 88.06
1g2n_A264 Ultraspiracle protein; antiparallel alpha-helical 88.02
1fcy_A236 RAR-gamma-1, retinoic acid receptor gamma-1; isoty 87.5
1ymt_A246 Steroidogenic factor 1; SF-1, ligand-binding domai 86.89
2e2r_A244 Estrogen-related receptor gamma; ERR gamma, BPA, n 86.8
3kmr_A266 Retinoic acid receptor alpha; nuclear receptor tra 86.77
3dzy_A467 Retinoic acid receptor RXR-alpha; DNA-binding, HOS 86.6
1ovl_A271 Orphan nuclear receptor NURR1 (MSe 414, 496, 511); 86.55
3tx7_B352 Nuclear receptor subfamily 5 group A member 2; LRH 86.39
3ipq_A283 Oxysterols receptor LXR-alpha; LXR homodimer, LXR 86.21
3plz_A257 FTZ-F1 related protein; alpha helical sandwhich, f 86.2
2ocf_A298 Estrogen receptor; estrogen receptor, LBD, monobod 85.92
1sqn_A261 PR, progesterone receptor; nuclear receptor, stero 84.06
3cqv_A199 Nuclear receptor subfamily 1 group D member 2; rev 83.25
3ilz_A267 Thyroid hormone receptor, alpha isoform 1 variant; 83.15
1xdk_B303 RAR-beta, retinoic acid receptor, beta; nuclear re 82.71
3v3e_B257 Nuclear receptor subfamily 4 group A member 1; orp 81.87
1t7r_A269 Androgen receptor; nuclear receptor, transcription 81.01
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A* Back     alignment and structure
Probab=94.33  E-value=0.37  Score=42.64  Aligned_cols=116  Identities=16%  Similarity=0.194  Sum_probs=76.4

Q ss_pred             chHHHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhhhhHH-HHHHHHHhccCChhHHHHHHHhhhcCCCcccc
Q 014531          270 PCYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIM-VLKEQISVLKLTEPEVRYLEKVVLFGSTTERM  348 (423)
Q Consensus       270 PayslL~~LL~SaKa~S~Glll~D~~EiT~~NrPkd~~fDWff~Pll-vlKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~  348 (423)
                      ..+.+|..--+|.+ +++.+++.||..++. +.++..-+.-|+++++ -+-..++.+++|++|=.||+-+++++.|... 
T Consensus        84 ~~~~~L~~a~~s~~-~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~L~ld~~E~~~L~ai~l~~~~~~~-  160 (237)
T 1pzl_A           84 GEHLLLGATKRSMV-FKDVLLLGNDYIVPR-HCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKG-  160 (237)
T ss_dssp             HHHHHHHHHHHHTT-SSSEEECTTSCEEES-SCGGGGGGHHHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHCCTTCTT-
T ss_pred             HHHHHHHHHHHhhc-cCCceeecCCcccCc-cchhhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhCCCCCC-
Confidence            35777777778876 678899999988754 3344322333556654 5668999999999999999999999876433 


Q ss_pred             ccccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 014531          349 EAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL  398 (423)
Q Consensus       349 ~~wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L  398 (423)
                             +.....+.+.| +.+++-|+--+.  .+.|....||-+++..|
T Consensus       161 -------l~~~~~ve~~q-~~~~~~L~~y~~--~~~~~~~~Rf~~LL~~l  200 (237)
T 1pzl_A          161 -------LSDPGKIKRLR-SQVQVSLEDYIN--DRQYDSRGRFGELLLLL  200 (237)
T ss_dssp             -------CSCHHHHHHHH-HHHHHHHHHHHH--SSSSCCTTHHHHHHTHH
T ss_pred             -------CCcHHHHHHHH-HHHHHHHHHHHH--hcCCChhhHHHHHHHHH
Confidence                   32223332221 233444444443  36777778998887765
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ... Back     alignment and structure
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum} Back     alignment and structure
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ... Back     alignment and structure
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A Back     alignment and structure
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas} Back     alignment and structure
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A Back     alignment and structure
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1 Back     alignment and structure
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A* Back     alignment and structure
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A* Back     alignment and structure
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A* Back     alignment and structure
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B* Back     alignment and structure
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A* Back     alignment and structure
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A* Back     alignment and structure
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A* Back     alignment and structure
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Back     alignment and structure
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1 Back     alignment and structure
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Back     alignment and structure
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A* Back     alignment and structure
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A Back     alignment and structure
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Back     alignment and structure
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A* Back     alignment and structure
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A Back     alignment and structure
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ... Back     alignment and structure
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1 Back     alignment and structure
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A Back     alignment and structure
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query423
d2j7ya1236 Estrogen receptor beta {Rat (Rattus norvegicus) [T 91.98
d1xpca_245 Estrogen receptor alpha {Human (Homo sapiens) [Tax 91.66
d2p1ta1230 Retinoid-X receptor alpha (RXR-alpha) {Human (Homo 89.08
d1pk5a_242 Orphan nuclear receptor NR5a2 (LRH-1) {Mouse (Mus 87.81
d1pzla_233 Hepatocyte nuclear factor 4-alpha {Human (Homo sap 87.7
d1sqna_251 Progesterone receptor {Human (Homo sapiens) [TaxId 85.52
d1pq9a_239 Oxysterols receptor LXR-beta {Human (Homo sapiens) 85.39
d2e2ra1223 Orphan nuclear receptor ERR3 {Human (Homo sapiens) 84.3
d1xvpb_246 Orphan nuclear receptor NR1I3 (CAR) {Human (Homo s 84.27
d3d24a1227 Steroid hormone receptor ERR1 {Human (Homo sapiens 83.82
d1nhza_247 Glucocorticoid receptor {Human (Homo sapiens) [Tax 83.36
d2r40d1243 Ecdysone receptor {Noctuid moth (Heliothis viresce 82.41
d1n46a_251 Thyroid hormone receptor beta (TR-beta) {Human (Ho 80.42
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: Nuclear receptor ligand-binding domain
superfamily: Nuclear receptor ligand-binding domain
family: Nuclear receptor ligand-binding domain
domain: Estrogen receptor beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.98  E-value=0.45  Score=40.57  Aligned_cols=75  Identities=15%  Similarity=0.187  Sum_probs=52.3

Q ss_pred             HHHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhhhhHHHHHHHHHhccCChhHHHHHHHhhhcCCCccc
Q 014531          272 YSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTER  347 (423)
Q Consensus       272 yslL~~LL~SaKa~S~Glll~D~~EiT~~NrPkd~~fDWff~PllvlKeQIk~~~L~E~EE~yL~KlvL~~~d~~r  347 (423)
                      ..+|..--+|... ...+++++|...+....-.-.-+.=+.+.+.-+-..++.++||++|=.||+-++|++.|...
T Consensus        77 l~~L~~a~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkaIvLf~pd~~~  151 (236)
T d2j7ya1          77 VLMVGLMWRSIDH-PGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYP  151 (236)
T ss_dssp             HHHHHHHHHHTTS-TTEEEEETTEEEEGGGGGGSTTHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTCCC
T ss_pred             HHHHHHHHHhhcC-CCcEEecCCcccCHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcCCC
Confidence            3444444455543 46788888866655433222234446677778888899999999999999999999887643
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sqna_ a.123.1.1 (A:) Progesterone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pq9a_ a.123.1.1 (A:) Oxysterols receptor LXR-beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2e2ra1 a.123.1.1 (A:234-456) Orphan nuclear receptor ERR3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xvpb_ a.123.1.1 (B:) Orphan nuclear receptor NR1I3 (CAR) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3d24a1 a.123.1.1 (A:194-420) Steroid hormone receptor ERR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nhza_ a.123.1.1 (A:) Glucocorticoid receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2r40d1 a.123.1.1 (D:287-529) Ecdysone receptor {Noctuid moth (Heliothis virescens) [TaxId: 7102]} Back     information, alignment and structure
>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure