Citrus Sinensis ID: 014570

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420--
Protein Sequence
MIALKSLRNRSSNLSPKFPFVEQRRWKKAVDSAQTRLENRTRDHQLDKLATKLRTLRTILNTHRLMSTRKRGPFVSVQIMSRWKNILGLNITMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVDLEIVELVNSDKNLGDALVEKWRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKHPGIFYISTKGGTQTVFLREAYSRGCLIEPNPIYVVRRKMLDLVLLGCRNTKELKHLEEIKQESDNLIGKIGDGGTRGGDWVVPIFEPLKKDNLDDNLD
Secondary Structure (PSIPRED)
ccHHHcccccccccccccccHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHccccEEEEcccccccccEEccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccEEEHHHHHHHHHHccccHHccccccccccccEEEEcccEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHccccEEEEEEccEEEEEEEcccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccHcccccccHHHHHHcccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHcccEEEEEccccccccEEcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHcccccEEEEcccEEEEEccccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHcccEEEEEcccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHccHHHHHHccccccccccHcccccccccccccccEEEEccccccccccccccc
Coil and Loop (DISEMBL)
mialkslrnrssnlspkfpfveQRRWKKAVDSAQTRLENRTRDHQLDKLATKLRTLRTILNThrlmstrkrgpfvSVQIMSRWKNILGLNitmgnflhkyphvfhlfthplnknlccrftpkmeNLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRtelglpedfrdsilgkygndfrlVDLEIVELVNSDKNLGDALVEKWRENEYREKWLSEFEtnfafpinfptgfkIERGFREKLKnwqrlpyvkpyegkenVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKhpgifyistkggtqTVFLREAYsrgcliepnpiyVVRRKMLDLVLLGCRNTKELKHLEEIKQESDNLigkigdggtrggdwvvpifeplkkdnlddnld
Flexible Loop (DISEMBL)
mialkslrnrssnlspkfpfveqrrwKKAVDSAqtrlenrtrdhqldklatklrtlrtilnthrlmstrkrgpfvSVQIMSRWKNILGLNITMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLLlmsksgtlHVHALRLIRtelglpedFRDSILGKYGNDFRLVDLEIVELvnsdknlgdALVEKWRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLknwqrlpyvkpyegkenvvRVRTCGGFERFEKRAVAVVHEllsltvekrvevERLSHFRKDFAMEVNVRELLLKHPGIfyistkggtqTVFLREAYSRGCLIEPNPIYVVRRKMLDLVLLGCRNTKELKHLEEIKQESDNLIGKigdggtrggdwvvpifeplkkdnlddnld
Low Complexity Region (SEG)
MIALKslrnrssnlsPKFPFVEQRRWKKAVDSAQTRLENRTRDHQLDKLATKLRTLRTILNTHRLMSTRKRGPFVSVQIMSRWKNILGLNITMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVDLEIVELVNSDKNLGDALVEKWRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKHPGIFYISTKGGTQTVFLREAYSRGCLIEPNPIYVVRRKMLDLVLLGCRNTKELKHLEEIKQESDNLigkigdggtrggdWVVPIFEPlkkdnlddnld
Disordered region (IsUnstruct)
***********************************************KLATKLRTLRTILNTHRLMSTRKRGPFVSVQIMSRWKNILGLNITMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVDLEIVELVNSDKNLGDALVEKWRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKHPGIFYISTKGGTQTVFLREAYSRGCLIEPNPIYVVRRKMLDLVLLGCRNTKELKHLEEIKQESDNLIGKIGDGGTRGGDWVVPIFEP***********
Disordered Region (DISOPRED)
******************PFV*******************TRDHQLDKLATKLRTLRTILNTHRLMS*************SRWKNILGLNITMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVDLEIVELVNSDKNLGDALV******************NFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVV*********RFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKHPGIFYISTKGGTQTVFLREAYSRGCLIEPNPIYVVRRKMLDLV***************************************PIFE************
Disordered Region (DISEMBL)
MIALKSLRNRSSNLSPKFPFVEQRRWKKAVDSAQTRLENRTRDHQLDKLATKLRTLRTILNTHRLMSTRKRGPFVSVQIMSRWKNILGLNITMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVDLEIVELVNSDKNLGDALVEKWRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKHPGIFYISTKGGTQTVFLREAYSRGCLIEPNPIYVVRRKMLDLVLLGCRNTKELKHLEEIKQESDNLIGKIGDGGTRGGDWVVPIFEPLKKDNLDDNLD
Disordered Region (DISPRO)
MIALKSLRNRSSNLSPKFPFVEQRRWK****S***RLENRTRDHQLDKLATKLRTLRTILNTHRLMSTRKRGPFVSVQIMSRWKNILGLNITMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVDLEIVELVNSDKNLGDALVEKWRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKHPGIFYISTKGGTQTVFLREAYSRGCLIEPNPIYVVRRKMLDLVLLGCR******************************DW***IFEP***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIALKSLRNRSSNLSPKFPFVEQRRWKKAVDSAQTRLENRTRDHQLDKLATKLRTLRTILNTHRLMSTRKRGPFVSVQIMSRWKNILGLNITMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVDLEIVELVNSDKNLGDALVEKWRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKHPGIFYISTKGGTQTVFLREAYSRGCLIEPNPIYVVRRKMLDLVLLGCRNTKELKHLEEIKQESDNLIGKIGDGGTRGGDWVVPIFEPLKKDNLDDNLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	422
224139660	449	predicted protein [Populus trichocarpa]	0.969	0.910	0.693	1e-164
255557749	447	conserved hypothetical protein [Ricinus	0.992	0.937	0.668	1e-162
225440264	441	PREDICTED: uncharacterized protein LOC10	0.966	0.925	0.673	1e-158
9758683	423	tyrosine-specific protein phosphatase-li	0.947	0.945	0.641	1e-149
334188219	439	ubiquitin carboxyl-terminal hydrolase-li	0.947	0.911	0.641	1e-149
356571866	419	PREDICTED: uncharacterized protein LOC10	0.933	0.940	0.658	1e-147
255637594	419	unknown [Glycine max]	0.933	0.940	0.655	1e-147
449437976	419	PREDICTED: uncharacterized protein LOC10	0.912	0.918	0.663	1e-143
449531505	387	PREDICTED: uncharacterized LOC101211236,	0.907	0.989	0.664	1e-143
297741740	494	unnamed protein product [Vitis vinifera]	0.893	0.763	0.621	1e-139

>gi|224139660|ref|XP_002323216.1| predicted protein [Populus trichocarpa] gi|222867846|gb|EEF04977.1| predicted protein [Populus trichocarpa]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 290/418 (69%), Positives = 342/418 (81%), Gaps = 9/418 (2%)

Query: 10  RSSNLSPKFPFVE-----QRRWKKAVDSAQTRLENRTRDHQLDKLATKLRTLRTILNTHR 64
           + +NL PK PF       QRRWKK  ++AQTRLE+RT D +L++L T L+ L+TIL  + 
Sbjct: 22  QETNL-PKIPFGPFNLFIQRRWKKPANTAQTRLESRTIDSKLNRLTTYLKKLKTILKIYE 80

Query: 65  LMSTRKRGPFVSVQIMSRWKNILGLNITMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKME 124
           LMS RKRGPFVS+Q+MSRW NI+GLN+ MG F+HK+PHVF +FTHP+ +NLCCR + K +
Sbjct: 81  LMSNRKRGPFVSLQLMSRWTNIVGLNVGMGEFVHKHPHVFDVFTHPVRRNLCCRISGKFK 140

Query: 125 NLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYG 184
            L++EE  +++ CE +   R+K+LL+MSK+G LHVHALRLIR ELGLPEDFR+S+LGKY 
Sbjct: 141 GLVSEEEGLVKDCELECAKRVKRLLMMSKNGRLHVHALRLIRRELGLPEDFRESVLGKYK 200

Query: 185 NDFRLVDLEIVELVNSDKNLGDALVEKWRENEYREKWLSEFETNFAFPINFPTGFKIERG 244
            DFRLVDLEIVELV+ D+N G A VEKWRE EYREKWLSEFET FAFPINFPTGFKIERG
Sbjct: 201 EDFRLVDLEIVELVDKDENFGVAEVEKWREKEYREKWLSEFETKFAFPINFPTGFKIERG 260

Query: 245 FREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERL 304
           FREKLKNWQ LPY+KPYEG E VV+V  CGG  R+EKRAVA++HELLSLTVEK VEVERL
Sbjct: 261 FREKLKNWQMLPYLKPYEGNE-VVQVGACGGKNRYEKRAVAMIHELLSLTVEKMVEVERL 319

Query: 305 SHFRKDFAMEVNVRELLLKHPGIFYISTKGGTQTVFLREAYSRGCLIEPNPIYVVRRKML 364
           +HF+KDF MEVNVRELLLK+PGIFYISTKG T TV LREAYS+GCLIEPNPIYVVRRKML
Sbjct: 320 AHFKKDFGMEVNVRELLLKNPGIFYISTKGSTHTVILREAYSKGCLIEPNPIYVVRRKML 379

Query: 365 DLVLLGCRNTKELKHLEEIKQESDNLIGKIGDGGTRGGDWVVPIFEPLKKDNLDDNLD 422
           DLVLLGCRNT+EL+  EEIK  SD+LI K   G T  G+WVVPI E    DN++D+ D
Sbjct: 380 DLVLLGCRNTRELQDEEEIKNGSDSLIRKAFAGNTTVGEWVVPILESF--DNVNDHDD 435

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557749|ref|XP_002519904.1| conserved hypothetical protein [Ricinus communis] gi|223540950|gb|EEF42508.1| conserved hypothetical protein [Ricinus communis]

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 286/428 (66%), Positives = 342/428 (79%), Gaps = 9/428 (2%)

Query: 1   MIALKS--LRNRSSNLSPKFPF-----VEQRRWKKAVDSAQTRLENRTRDHQLDKLATKL 53
           MI L+   L  RS N S + PF       Q+RWKK  ++AQTRLENRTRD +LDKLAT L
Sbjct: 1   MIVLEKFFLNFRSCNASLRIPFGPFNSFVQKRWKKPANTAQTRLENRTRDSKLDKLATDL 60

Query: 54  RTLRTILNTHRLMSTRKRGPFVSVQIMSRWKNILGLNITMGNFLHKYPHVFHLFTHPLNK 113
           + L+TI N + LMS RKRGPFVS+Q+MSRW NI+GLN+ MG F+ KYPHVF +FTHP+ +
Sbjct: 61  KKLKTIYNIYELMSNRKRGPFVSLQLMSRWSNIVGLNVGMGEFVQKYPHVFEVFTHPVRR 120

Query: 114 NLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRTELGLPE 173
           NLCCR T  M +LI+EEV++ + CE  AV R+KKLL+MSKSG LHVHALRLI+ ELGLPE
Sbjct: 121 NLCCRITKTMRDLIDEEVNITKECEFRAVWRVKKLLMMSKSGVLHVHALRLIKRELGLPE 180

Query: 174 DFRDSILGKYGNDFRLVDLEIVELVNSDKNLGDALVEKWRENEYREKWLSEFETNFAFPI 233
           DFRDSILGKY + FRLV+LEIVELV+ +++L  A++EKWRE EYREKWLSEF+T F+FPI
Sbjct: 181 DFRDSILGKYKHHFRLVNLEIVELVSPEEDLAVAVIEKWREREYREKWLSEFDTKFSFPI 240

Query: 234 NFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSL 293
           +FPTGFKIE GFR K+KNWQRLPY+KPYE KE +V+VR+CGG ER+EKR VA++HELLSL
Sbjct: 241 SFPTGFKIEGGFRVKMKNWQRLPYLKPYETKE-LVKVRSCGGKERYEKRVVAIIHELLSL 299

Query: 294 TVEKRVEVERLSHFRKDFAMEVNVRELLLKHPGIFYISTKGGTQTVFLREAYSRGCLIEP 353
           TVE  VEVERLSHFRKD  MEVNVRELLLKHPGIFYIST+G    VFLREAY+ GC++EP
Sbjct: 300 TVENMVEVERLSHFRKDLGMEVNVRELLLKHPGIFYISTRGTNHIVFLREAYAGGCMVEP 359

Query: 354 NPIYVVRRKMLDLVLLGCRNTKELKHLEEIKQESDNLIGKIGDGGTRGGDWVVPIFEPLK 413
           NPI VVRRKMLDLVLLG RNT+EL++  E+K   D L+     GGT GGDWV+PI E  +
Sbjct: 360 NPISVVRRKMLDLVLLGRRNTRELQNRVEVKNGHDTLVSTTNFGGTAGGDWVIPILESFE 419

Query: 414 K-DNLDDN 420
             D+ D N
Sbjct: 420 TGDDRDRN 427

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440264|ref|XP_002278800.1| PREDICTED: uncharacterized protein LOC100243149 [Vitis vinifera]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 285/423 (67%), Positives = 332/423 (78%), Gaps = 15/423 (3%)

Query: 4   LKSLRNRSSNLSPKFPF-----VEQRRWKKAVDSAQTRLENRTRDHQLDKLATKLRTLRT 58
           +++L+ ++    P FPF       QRRWKK  D+AQTRLENRTRD QLDKL   L+ L T
Sbjct: 1   MRALQMKAPTSQP-FPFGPFNSAMQRRWKKPADTAQTRLENRTRDSQLDKLTANLKRLAT 59

Query: 59  ILNTHRLMSTRKRGPFVSVQIMSRWKNILGLNITMGNFLHKYPHVFHLFTHPLNKNLCCR 118
           +L    L+S R RGP VSVQIMSRWKNI+GLN+ MG  L KYPH+F +FTHP+ +N CCR
Sbjct: 60  VLQLQHLISKR-RGPHVSVQIMSRWKNIVGLNVDMGQLLRKYPHIFEVFTHPVKRNQCCR 118

Query: 119 FTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDS 178
            + +ME+L+ +E   ++ CE +AV R+KKLL+MS SGTL VHAL LIR ELGLPE FRDS
Sbjct: 119 VSRRMEDLMLQEEAAVKECELEAVRRLKKLLMMSVSGTLRVHALWLIRRELGLPESFRDS 178

Query: 179 ILGKYGNDFRLVDLEIVELVNSDKNLGDALVEKWRENEYREKWLSEFETNFAFPINFPTG 238
           I+ KY +DF+LVDLE VELV  D++LG A VE WRE EYREKWLSEFET +AFPIN PTG
Sbjct: 179 IIAKYYDDFKLVDLETVELVGRDEDLGVAQVEIWREREYREKWLSEFETKYAFPINLPTG 238

Query: 239 FKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKR 298
           FKIE GFREKLKNWQRL Y+KPYE KE VVRVRTCGG ERFEKRAV ++HELLSLT EK 
Sbjct: 239 FKIESGFREKLKNWQRLQYLKPYERKE-VVRVRTCGGIERFEKRAVGILHELLSLTTEKM 297

Query: 299 VEVERLSHFRKDFAMEVNVRELLLKHPGIFYISTKGGTQTVFLREAYSRGCLIEPNPIYV 358
           VEVERLSHF +DF MEVNVRELLLKHPGIFYIST+G TQ VFLREAY RGCLIEPNP+YV
Sbjct: 298 VEVERLSHFWRDFCMEVNVRELLLKHPGIFYISTRGNTQMVFLREAYRRGCLIEPNPVYV 357

Query: 359 VRRKMLDLVLLGCRNTKELKHLEEIKQESDNLIGKIGDGGTRGGDWVVPIFEPLKKDNLD 418
           VRRKMLDL+LLG R+++EL H+E  K+ESDN++G    G  R GDWV+PI      DN D
Sbjct: 358 VRRKMLDLLLLGWRHSREL-HIES-KEESDNVVGDEDVGVPRDGDWVIPIL-----DNFD 410

Query: 419 DNL 421
           DNL
Sbjct: 411 DNL 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9758683|dbj|BAB09222.1| tyrosine-specific protein phosphatase-like protein [Arabidopsis thaliana]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 276/430 (64%), Positives = 328/430 (76%), Gaps = 30/430 (6%)

Query: 1   MIALKSLR-------------NRSSNLSPKFPFVEQRRWKKAVDSAQTRLENRTRDHQLD 47
           M +LKSLR              +SS L P + F  QRRW K VDSAQTRLENRTRDHQLD
Sbjct: 1   MNSLKSLRYSSIREALTHQNPTKSSFLCPLY-FYNQRRWLKPVDSAQTRLENRTRDHQLD 59

Query: 48  KLATKLRTLRTILNTHRLMSTRKRGPFVSVQIMSRWKNILGLNITMGNFLHKYPHVFHLF 107
           K+  ++R L  IL   +LMS++KRGPFVS+Q+MSRWKN++GLN+ +G F+ KYPH F +F
Sbjct: 60  KIIPQIRKLNIILEISKLMSSKKRGPFVSLQLMSRWKNLVGLNVNVGAFIGKYPHAFEIF 119

Query: 108 THPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRT 167
           THP +KNLCC+ T K + LI+EE +V+R CE DAV R+KKLLL+SK G L VHALRLIR 
Sbjct: 120 THPFSKNLCCKITEKFKVLIDEEENVVRECEVDAVKRVKKLLLLSKHGVLRVHALRLIRK 179

Query: 168 ELGLPEDFRDSILGKYGNDFRLVDLEIVELVN-SDKNLGDALVEKWRENEYREKWLSEFE 226
           ELGLPEDFRDSIL KY ++FRLVDLE +ELV+  D++L  A VE+WRE EYREKWLS+FE
Sbjct: 180 ELGLPEDFRDSILAKYSSEFRLVDLETLELVDRDDESLCVAKVEEWREVEYREKWLSKFE 239

Query: 227 TNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAV 286
           TN+AFPI+ PTGFKIE+GFRE+LKNWQR+PYVKPY+ KE         G ERFEKR VAV
Sbjct: 240 TNYAFPIHLPTGFKIEKGFREELKNWQRVPYVKPYDRKE------ISRGLERFEKRVVAV 293

Query: 287 VHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKHPGIFYISTKGGTQTVFLREAYS 346
           +HELLSLTVEK VEVERL+HFRKD  +EVNVRE++LKHPGIFY+STKG +QT+FLREAYS
Sbjct: 294 IHELLSLTVEKMVEVERLAHFRKDLGIEVNVREVILKHPGIFYVSTKGSSQTLFLREAYS 353

Query: 347 RGCLIEPNPIYVVRRKMLDLVLLGCRNTKEL------KHLEEIKQESDNLIGKIGDG-GT 399
           +GCLIEPNPIY VRRKMLDLVLL  R ++ L       H EE  +  D LI    D  G 
Sbjct: 354 KGCLIEPNPIYNVRRKMLDLVLLKTRYSRMLLQREDETHREE--KSRDVLISSNEDWEGG 411

Query: 400 RGGDWVVPIF 409
           R GDWV+PI 
Sbjct: 412 RDGDWVLPIL 421

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334188219|ref|NP_001190477.1| ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana] gi|332007917|gb|AED95300.1| ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 276/430 (64%), Positives = 328/430 (76%), Gaps = 30/430 (6%)

Query: 1   MIALKSLR-------------NRSSNLSPKFPFVEQRRWKKAVDSAQTRLENRTRDHQLD 47
           M +LKSLR              +SS L P + F  QRRW K VDSAQTRLENRTRDHQLD
Sbjct: 17  MNSLKSLRYSSIREALTHQNPTKSSFLCPLY-FYNQRRWLKPVDSAQTRLENRTRDHQLD 75

Query: 48  KLATKLRTLRTILNTHRLMSTRKRGPFVSVQIMSRWKNILGLNITMGNFLHKYPHVFHLF 107
           K+  ++R L  IL   +LMS++KRGPFVS+Q+MSRWKN++GLN+ +G F+ KYPH F +F
Sbjct: 76  KIIPQIRKLNIILEISKLMSSKKRGPFVSLQLMSRWKNLVGLNVNVGAFIGKYPHAFEIF 135

Query: 108 THPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRT 167
           THP +KNLCC+ T K + LI+EE +V+R CE DAV R+KKLLL+SK G L VHALRLIR 
Sbjct: 136 THPFSKNLCCKITEKFKVLIDEEENVVRECEVDAVKRVKKLLLLSKHGVLRVHALRLIRK 195

Query: 168 ELGLPEDFRDSILGKYGNDFRLVDLEIVELVN-SDKNLGDALVEKWRENEYREKWLSEFE 226
           ELGLPEDFRDSIL KY ++FRLVDLE +ELV+  D++L  A VE+WRE EYREKWLS+FE
Sbjct: 196 ELGLPEDFRDSILAKYSSEFRLVDLETLELVDRDDESLCVAKVEEWREVEYREKWLSKFE 255

Query: 227 TNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAV 286
           TN+AFPI+ PTGFKIE+GFRE+LKNWQR+PYVKPY+ KE         G ERFEKR VAV
Sbjct: 256 TNYAFPIHLPTGFKIEKGFREELKNWQRVPYVKPYDRKE------ISRGLERFEKRVVAV 309

Query: 287 VHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKHPGIFYISTKGGTQTVFLREAYS 346
           +HELLSLTVEK VEVERL+HFRKD  +EVNVRE++LKHPGIFY+STKG +QT+FLREAYS
Sbjct: 310 IHELLSLTVEKMVEVERLAHFRKDLGIEVNVREVILKHPGIFYVSTKGSSQTLFLREAYS 369

Query: 347 RGCLIEPNPIYVVRRKMLDLVLLGCRNTKEL------KHLEEIKQESDNLIGKIGD-GGT 399
           +GCLIEPNPIY VRRKMLDLVLL  R ++ L       H EE  +  D LI    D  G 
Sbjct: 370 KGCLIEPNPIYNVRRKMLDLVLLKTRYSRMLLQREDETHREE--KSRDVLISSNEDWEGG 427

Query: 400 RGGDWVVPIF 409
           R GDWV+PI 
Sbjct: 428 RDGDWVLPIL 437

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571866|ref|XP_003554092.1| PREDICTED: uncharacterized protein LOC100789334 [Glycine max]

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 262/398 (65%), Positives = 312/398 (78%), Gaps = 4/398 (1%)

Query: 16  PKFPFVE--QRRWKKAVDSAQTRLENRTRDHQLDKLATKLRTLRTILNTHRLMSTRKRGP 73
           P  PF    QRRWKK   SAQTRLE+R RD  LDKL + L+ L  +L  H LMS RKRGP
Sbjct: 15  PPSPFTLFIQRRWKKPTVSAQTRLEDRVRDPHLDKLMSHLKRLDLVLRIHHLMSARKRGP 74

Query: 74  FVSVQIMSRWKNILGLNITMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDV 133
           FVS+ ++SRW+NILGL+I +G FL KYPHVF +F HP  KN CCR T +M+ LI  E  V
Sbjct: 75  FVSLTLLSRWRNILGLHIPVGLFLRKYPHVFLVFVHPFRKNTCCRITKRMKELILLEGLV 134

Query: 134 IRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVDLE 193
           +++ E++AV R+KKLL+MS +GTL +HALRL + ELGLPEDFRDSILGKY  DFRLVDLE
Sbjct: 135 VKQQETEAVKRVKKLLMMSLNGTLRLHALRLFKRELGLPEDFRDSILGKYSADFRLVDLE 194

Query: 194 IVELVNSDKNLGDALVEKWRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQ 253
           +V LV+ D  L  A VE+WRE EY EKWLSEFET FAFP++FPTGFK ERGF+E+LKNWQ
Sbjct: 195 VVALVDWDAELAVARVEEWREKEYSEKWLSEFETKFAFPVSFPTGFKFERGFKERLKNWQ 254

Query: 254 RLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAM 313
           RLPY KPYE KE VVRVRTCGG ER+EKRAVAV+HELLSLTVEK VEV++L+HFR+DF +
Sbjct: 255 RLPYAKPYERKE-VVRVRTCGGIERYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFGV 313

Query: 314 EVNVRELLLKHPGIFYISTKGGTQTVFLREAYSRGCLIEPNPIYVVRRKMLDLVLLGCRN 373
           EVNVRELLL+HPGIFY+STKG T TVFLREAY +G L+EPNP+Y  RR MLDLVLLGCR 
Sbjct: 314 EVNVRELLLRHPGIFYLSTKGKTLTVFLREAYRKGGLVEPNPVYETRRNMLDLVLLGCRK 373

Query: 374 TKELKHLEEIKQESDNLIG-KIGDGGTRGGDWVVPIFE 410
           TK L   +E  +E  N++  ++ + G R GDWV+P  E
Sbjct: 374 TKLLLDCDESNKEESNVVACEVNEEGERQGDWVIPFLE 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637594|gb|ACU19122.1| unknown [Glycine max]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 261/398 (65%), Positives = 312/398 (78%), Gaps = 4/398 (1%)

Query: 16  PKFPFVE--QRRWKKAVDSAQTRLENRTRDHQLDKLATKLRTLRTILNTHRLMSTRKRGP 73
           P  PF    QRRWKK   SAQTRLE+R RD  LDKL + L+ L  +L  H LMS RKRGP
Sbjct: 15  PPSPFTLFIQRRWKKPTVSAQTRLEDRVRDPHLDKLMSHLKRLDLVLRIHHLMSARKRGP 74

Query: 74  FVSVQIMSRWKNILGLNITMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDV 133
           FVS+ ++SRW+NILGL+I +G FL KYPHVF +F HP  KN CCR T +M+ LI  E  V
Sbjct: 75  FVSLTLLSRWRNILGLHIPVGLFLRKYPHVFLVFVHPFRKNTCCRITKRMKELILLEGLV 134

Query: 134 IRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVDLE 193
           +++ E++AV R+KKLL+MS +GTL +HALRL + ELGLPEDFRDSILGKY  DFRLVDLE
Sbjct: 135 VKQQETEAVKRVKKLLMMSLNGTLRLHALRLFKRELGLPEDFRDSILGKYSADFRLVDLE 194

Query: 194 IVELVNSDKNLGDALVEKWRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQ 253
           +V LV+ D  L  A VE+WRE EY EKWLSEFET FAFP++FPTGFK ERGF+E+LKNWQ
Sbjct: 195 VVALVDWDAELAVARVEEWREKEYSEKWLSEFETKFAFPVSFPTGFKFERGFKERLKNWQ 254

Query: 254 RLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAM 313
           RLPY KPYE KE VVRVRTCGG ER+EKRAVAV+HELLSLTVEK VEV++L+HFR+DF +
Sbjct: 255 RLPYAKPYERKE-VVRVRTCGGIERYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFGV 313

Query: 314 EVNVRELLLKHPGIFYISTKGGTQTVFLREAYSRGCLIEPNPIYVVRRKMLDLVLLGCRN 373
           EV+VRELLL+HPGIFY+STKG T TVFLREAY +G L+EPNP+Y  RR MLDLVLLGCR 
Sbjct: 314 EVDVRELLLRHPGIFYLSTKGKTLTVFLREAYRKGGLVEPNPVYETRRNMLDLVLLGCRK 373

Query: 374 TKELKHLEEIKQESDNLIG-KIGDGGTRGGDWVVPIFE 410
           TK L   +E  +E  N++  ++ + G R GDWV+P  E
Sbjct: 374 TKLLLDCDESNKEESNVVACEVNEEGERQGDWVIPFLE 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437976|ref|XP_004136766.1| PREDICTED: uncharacterized protein LOC101211236 [Cucumis sativus]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/389 (66%), Positives = 312/389 (80%), Gaps = 4/389 (1%)

Query: 23  QRRWKKAVDSAQTRLENRTRDHQLDKLATKLRTLRTILNTHRLMSTRKRGPFVSVQIMSR 82
           Q+RW+K + +AQTRLE+RTRD +LDKLAT+L+  R IL  + LM+ RKRGPFVS+QIMSR
Sbjct: 31  QKRWRKPIVNAQTRLEDRTRDLKLDKLATQLKKFRVILKLYELMNNRKRGPFVSLQIMSR 90

Query: 83  WKNILGLNITMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDAV 142
           W+NI+G+ I +G FLHKYPH+F LF HP+ +NLCCR T KM  L+ +E +VI   E + V
Sbjct: 91  WRNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETV 150

Query: 143 IRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVDLEIVELVNSDK 202
            R+KKLL+MS +GTLHVHALRLI  ELGLP+ FR+SIL KY +DFRLVDLEIVELV   K
Sbjct: 151 QRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLEIVELVEKHK 210

Query: 203 NLGDALVEKWRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYE 262
           N   A VEKWRE E+REKWLSEF+  +AFPINFPTGF IE GFREKL+NWQRLPY +PYE
Sbjct: 211 NGAIAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLRNWQRLPYTQPYE 270

Query: 263 GKENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLL 322
            ++     R+ GG +R EKRAVAV+HELLSLTVEK V+VERL HFR+DFA+EVN+RELLL
Sbjct: 271 KRQGFGH-RSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDFAIEVNIRELLL 329

Query: 323 KHPGIFYISTKGGTQTVFLREAYSRGCLIEPNPIYVVRRKMLDLVLLGCRNTKELKHLEE 382
           KHPGIFYISTKG TQ VFLREAY++GCL+EPNPIY+VRRKM DLVLLG R+TK+L+   E
Sbjct: 330 KHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRHTKQLESSME 389

Query: 383 IKQESDNLIGKIGDGGTRG-GDWVVPIFE 410
           IK E+DN     GD  ++  G WV+PI +
Sbjct: 390 IK-ENDNATEN-GDWLSKSEGSWVLPILQ 416

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531505|ref|XP_004172726.1| PREDICTED: uncharacterized LOC101211236, partial [Cucumis sativus]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 257/387 (66%), Positives = 310/387 (80%), Gaps = 4/387 (1%)

Query: 25  RWKKAVDSAQTRLENRTRDHQLDKLATKLRTLRTILNTHRLMSTRKRGPFVSVQIMSRWK 84
           RW+K + +AQTRLE+RTRD +LDKLAT+L+  R IL  + LM+ RKRGPFVS+QIMSRW+
Sbjct: 1   RWRKPIVNAQTRLEDRTRDLKLDKLATQLKKFRVILKLYELMNNRKRGPFVSLQIMSRWR 60

Query: 85  NILGLNITMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIR 144
           NI+G+ I +G FLHKYPH+F LF HP+ +NLCCR T KM  L+ +E +VI   E + V R
Sbjct: 61  NIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETVQR 120

Query: 145 IKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVDLEIVELVNSDKNL 204
           +KKLL+MS +GTLHVHALRLI  ELGLP+ FR+SIL KY +DFRLVDLEIVELV   KN 
Sbjct: 121 LKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLEIVELVEKHKNG 180

Query: 205 GDALVEKWRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGK 264
             A VEKWRE E+REKWLSEF+  +AFPINFPTGF IE GFREKL+NWQRLPY +PYE +
Sbjct: 181 AIAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLRNWQRLPYTQPYEKR 240

Query: 265 ENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKH 324
           +     R+ GG +R EKRAVAV+HELLSLTVEK V+VERL HFR+DFA+EVN+RELLLKH
Sbjct: 241 QGFGH-RSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDFAIEVNIRELLLKH 299

Query: 325 PGIFYISTKGGTQTVFLREAYSRGCLIEPNPIYVVRRKMLDLVLLGCRNTKELKHLEEIK 384
           PGIFYISTKG TQ VFLREAY++GCL+EPNPIY+VRRKM DLVLLG R+TK+L+   EIK
Sbjct: 300 PGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRHTKQLESSMEIK 359

Query: 385 QESDNLIGKIGDGGTRG-GDWVVPIFE 410
            E+DN     GD  ++  G WV+PI +
Sbjct: 360 -ENDNATEN-GDWLSKSEGSWVLPILQ 384

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741740|emb|CBI32872.3| unnamed protein product [Vitis vinifera]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/423 (62%), Positives = 307/423 (72%), Gaps = 46/423 (10%)

Query: 4   LKSLRNRSSNLSPKFPF-----VEQRRWKKAVDSAQTRLENRTRDHQLDKLATKLRTLRT 58
           +++L+ ++    P FPF       QRRWKK  D+AQTRLENRTRD QLDKL   L+ L T
Sbjct: 1   MRALQMKAPTSQP-FPFGPFNSAMQRRWKKPADTAQTRLENRTRDSQLDKLTANLKRLAT 59

Query: 59  ILNTHRLMSTRKRGPFVSVQIMSRWKNILGLNITMGNFLHKYPHVFHLFTHPLNKNLCCR 118
           +L    L+S R RGP VSVQIMSRWKNI+GLN+ MG  L KYPH+F +FTHP+ +N CCR
Sbjct: 60  VLQLQHLISKR-RGPHVSVQIMSRWKNIVGLNVDMGQLLRKYPHIFEVFTHPVKRNQCCR 118

Query: 119 FTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDS 178
            + +ME+L+ +E   ++ CE +AV R+KKLL+MS SGTL VHAL LIR EL         
Sbjct: 119 VSRRMEDLMLQEEAAVKECELEAVRRLKKLLMMSVSGTLRVHALWLIRREL--------- 169

Query: 179 ILGKYGNDFRLVDLEIVELVNSDKNLGDALVEKWRENEYREKWLSEFETNFAFPINFPTG 238
                                 D++LG A VE WRE EYREKWLSEFET +AFPIN PTG
Sbjct: 170 ----------------------DEDLGVAQVEIWREREYREKWLSEFETKYAFPINLPTG 207

Query: 239 FKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKR 298
           FKIE GFREKLKNWQRL Y+KPYE KE VVRVRTCGG ERFEKRAV ++HELLSLT EK 
Sbjct: 208 FKIESGFREKLKNWQRLQYLKPYERKE-VVRVRTCGGIERFEKRAVGILHELLSLTTEKM 266

Query: 299 VEVERLSHFRKDFAMEVNVRELLLKHPGIFYISTKGGTQTVFLREAYSRGCLIEPNPIYV 358
           VEVERLSHF +DF MEVNVRELLLKHPGIFYIST+G TQ VFLREAY RGCLIEPNP+YV
Sbjct: 267 VEVERLSHFWRDFCMEVNVRELLLKHPGIFYISTRGNTQMVFLREAYRRGCLIEPNPVYV 326

Query: 359 VRRKMLDLVLLGCRNTKELKHLEEIKQESDNLIGKIGDGGTRGGDWVVPIFEPLKKDNLD 418
           VRRKMLDL+LLG R+++EL H+E  K+ESDN++G    G  R GDWV+PI      DN D
Sbjct: 327 VRRKMLDLLLLGWRHSREL-HIES-KEESDNVVGDEDVGVPRDGDWVIPIL-----DNFD 379

Query: 419 DNL 421
           DNL
Sbjct: 380 DNL 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	422
TAIR|locus:504955534	409	RPD1 "ROOT PRIMORDIUM DEFECTIV	0.827	0.853	0.396	2.5e-65
TAIR|locus:2009230	390	AT1G06440 [Arabidopsis thalian	0.808	0.874	0.425	6.7e-65
TAIR|locus:4515103321	528	WTF1 "what's this factor?" [Ar	0.791	0.632	0.292	8e-37
TAIR|locus:2166305	494	emb1692 "embryo defective 1692	0.770	0.657	0.282	4.1e-33
TAIR|locus:2042561	415	AT2G31290 [Arabidopsis thalian	0.751	0.763	0.293	1.8e-32
TAIR|locus:2012981	470	AT1G71850 "AT1G71850" [Arabido	0.753	0.676	0.268	6.9e-31
TAIR|locus:2064940	387	WTF9 "AT2G39120" [Arabidopsis	0.796	0.868	0.292	1e-29
TAIR|locus:2207380	413	AT1G79120 [Arabidopsis thalian	0.789	0.806	0.297	4.4e-29
TAIR|locus:2138738	395	AT4G08940 [Arabidopsis thalian	0.767	0.820	0.275	1.9e-26

TAIR|locus:504955534 RPD1 "ROOT PRIMORDIUM DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 145/366 (39%), Positives = 215/366 (58%)

Query:    38 ENRTRDHQLDKLATKLRTLRTILNTHRLMSTRKRGPFVSVQIMSRWKNILGLNITM---G 94
             ++R RDH  D      + +R ++  H L+ ++     +++ ++      LGL       G
Sbjct:    44 QDRVRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHT-IAISLLDTLARRLGLGFKQHEPG 102

Query:    95 NFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKS 154
              FL K+PHVF ++ HP+ + L CR T K  + I  E + +     DAV R++KL++MS +
Sbjct:   103 AFLLKFPHVFEIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVTRLRKLVMMSNT 162

Query:   155 GTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVDLE-----IVELVNSDKNLGDALV 209
             G + +  +R+ RTE GLPEDF  S++ K+   FRL+D E      +E+V  D NL    +
Sbjct:   163 GRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNLSICAI 222

Query:   210 EKWRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVVR 269
             E+ RE EYR K +   +  F+F +NFP GFKI + FR  +  WQRLPY  PYE       
Sbjct:   223 ERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYEDISGY-D 281

Query:   270 VRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKHPGIFY 329
             +R+     R EKR+VA +HELLSLTVEK++ +ER++HFR    +   ++E LL+H GIFY
Sbjct:   282 LRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQHQGIFY 341

Query:   330 ISTKGG---TQTVFLREAYSRGCLIEPNPIYVVRRKMLDLVLLGCRNTK---EL-KHLEE 382
             IST+G      TVFLRE Y RG L+EPN +Y+ RR++ +LVL+  R  K   EL ++ + 
Sbjct:   342 ISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELVLMSPRKAKVDAELVRYRDG 401

Query:   383 IKQESD 388
             +  E D
Sbjct:   402 LDDEDD 407

GO:0009507 "chloroplast" evidence=ISM

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

TAIR|locus:2009230 AT1G06440 [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 151/355 (42%), Positives = 212/355 (59%)

Query:    27 KKAVDSAQTRLENRTRDHQLDKLATKLRTLRTILNTHRLMSTRKRG--PFVSVQIMSRWK 84
             +    SAQ  + +R+RD   +KL  K + L  ++    L         P +S++ +SR  
Sbjct:    22 RSTTTSAQY-VASRSRDPVFEKLMDKYKNLLKVIAIQDLTLANPTADPPSLSIEFLSRLS 80

Query:    85 NILGLNITMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIR 144
               L LN    +FL KYPH+FH+   P+     CR T     +  +E   I    S  V R
Sbjct:    81 QKLHLNRGAASFLRKYPHIFHVLYDPVKAEPFCRLTDVAMEISRQEALAITATLSLVVDR 140

Query:   145 IKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVD-----LEIVELVN 199
             + +LL MS S ++ + A+  +  ELGLP+DF DS++ K  + F+L D       I+ELV 
Sbjct:   141 LVRLLSMSISKSIPLRAVFKVWRELGLPDDFEDSVISKNPHLFKLSDGHESNTHILELVQ 200

Query:   200 SD-KNLG-DALVEKWRENEYREKWLS--EFETNFAFPINFPTGFKIERGFREKLKNWQRL 255
              + K L  +A VEKWR  E  ++  S    E  F+F  ++P G ++ + F+ K+K WQRL
Sbjct:   201 EEEKRLEFEAAVEKWRVVECSKEDCSVDRTEIQFSFKHSYPPGMRLSKTFKAKVKEWQRL 260

Query:   256 PYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEV 315
             PYV PYE  + V + ++  G    EKRAVA+ HE L+LTVEK VEVE++SHFRK F +++
Sbjct:   261 PYVGPYE--DMVGKKKSRSGVMGIEKRAVAIAHEFLNLTVEKMVEVEKISHFRKCFGIDL 318

Query:   316 NVRELLLKHPGIFYISTKGGTQTVFLREAYSRGCLIEPNPIYVVRRKMLDLVLLG 370
             N+R+L L HPG+FY+STKG   TVFLREAY RG LI+PNP+Y  RRK+LDLVLLG
Sbjct:   319 NIRDLFLDHPGMFYVSTKGKRHTVFLREAYERGRLIDPNPVYDARRKLLDLVLLG 373

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:4515103321 WTF1 "what's this factor?" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 104/355 (29%), Positives = 188/355 (52%)

Query:    24 RRWKKAVDSAQTRLENRTRDHQLDKLATKLRTLRTILNTHRLMSTRKRGPFVSVQIMSRW 83
             R+ +  V+  +  ++ R ++   D +  + + L+ +LN  +++ ++     +S++ + ++
Sbjct:    63 RKTRVVVEPVRAAVKRR-KELTFDSVVQRDKKLKLVLNIRKILVSQP-DRMMSLRGLGKY 120

Query:    84 KNILGLNITMG--NFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDA 141
             +  LGL         L KYP VF +       +L  + T + E L  +E+ +    E   
Sbjct:   121 RRDLGLKKRRRFIALLRKYPGVFEIVEEGAY-SLRFKMTSEAERLYLDEMRIRNELEDVL 179

Query:   142 VIRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVDLE---IVELV 198
             V++++KL++MS    + +  +  ++T+LGLP +FRD+I  +Y   FR+V       +EL 
Sbjct:   180 VVKLRKLVMMSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRGPALELT 239

Query:   199 NSDKNLGDALVE------KWRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNW 252
             + D  L  +  E      + RE+E R   +      F   +  P G  + +    K+  +
Sbjct:   240 HWDPELAVSAAELSEDDNRTRESEERNLIIDR-PPKFN-RVKLPRGLNLSKSETRKISQF 297

Query:   253 QRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFA 312
             + + Y+ PY+   +   +R+ G  E+ EK A  V+HELLSLT EKR  V+ L+HFR++F 
Sbjct:   298 RDMQYISPYK---DFSHLRS-GTLEK-EKHACGVIHELLSLTTEKRTLVDHLTHFREEFR 352

Query:   313 MEVNVRELLLKHPGIFYISTKGGTQTVFLREAYSRGCLIEPNPIYVVRRKMLDLV 367
                 +R +L++HP +FY+S KG   +VFLREAY    LI+ +P+ +V+ KM  LV
Sbjct:   353 FSQQLRGMLIRHPDLFYVSLKGERDSVFLREAYRNSELIDKDPLTLVKEKMRALV 407

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2166305 emb1692 "embryo defective 1692" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 99/351 (28%), Positives = 180/351 (51%)

Query:    42 RDHQLDKLATKLRTLRTILNTHRLMSTRKRGPFVSVQIMSRWKNILGLN--ITMGNFLHK 99
             R   LD+   K   +R +   + L+ ++ +  ++ ++I+ + ++ L +   + + + + +
Sbjct:    61 RSPSLDRHVVKQNRVRFVQKLNTLLLSKPKH-YIPIEILYKCRSYLCIENPLAILSMIRR 119

Query:   100 YPHVFHLFT----H-PLN-----KNLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLL 149
             YP +F LFT    H P+N       LC R T    +L  +E+++          +++KLL
Sbjct:   120 YPTIFELFTTPTPHLPMNATKPLSQLCVRLTSAASSLAMQELNLKSEISDKLATKLQKLL 179

Query:   150 LMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVDLEI---VELVNSDKNLGD 206
             ++S    L +  L  I  + G P +FR  +   Y + F+ VD      +ELV+SD  L +
Sbjct:   180 MLSSHRRLLLSKLVHIAPDFGFPPNFRSRLCNDYPDKFKTVDTSYGRALELVSSDPELAN 239

Query:   207 ALVEKWRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKEN 266
              +       E     + +    F   +N   G  ++R  +  L  ++  P V PY+   +
Sbjct:   240 QMPSP----EVDRGLIVDRPLKFK-RLNLRRGLNLKRRHQGFLIKFRESPDVCPYKMSSD 294

Query:   267 VVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKHPG 326
              +   +       EKRA AVV E+L LTVEKR  ++ L+HFRK+F++   +R+L+++HP 
Sbjct:   295 YLASESIEA----EKRACAVVREVLGLTVEKRTLIDHLTHFRKEFSLPNKLRDLIVRHPE 350

Query:   327 IFYISTKGGTQTVFLREAYS-RGCLIEPNPIYVVRRKMLDLVLLGCRNTKE 376
             +FY+S KG   +VFL EAY+  G L++ +   V+R +++DL+  G R  +E
Sbjct:   351 LFYVSIKGMRDSVFLVEAYNDNGDLLDKDERLVIRERLIDLIQEGKRIRRE 401

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2042561 AT2G31290 [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 100/341 (29%), Positives = 174/341 (51%)

Query:    54 RTLRTILNTHRLMSTRKRGP--FVSVQIMSRWKNILGLNITMGNFLHKYPHVFHLFTHPL 111
             R  R I+N+ RL +   R P    S++ + +    L L     N+L KYP  FH++    
Sbjct:    40 RNKRWIVNS-RLKNIILRCPNQVASIKFLQKKFKTLDLQGKALNWLKKYPCCFHVYLE-- 96

Query:   112 NKNLCCRFTPKMENLINEEVDVIRRCESDAVI-RIKKLLLMSKSGTLHVHALRLIRTELG 170
             N    CR T  M  L+ EE ++++  +   +  R+ KLL++S +  L+V  L   +   G
Sbjct:    97 NDEYYCRLTKPMMTLVEEE-ELVKDTQEPVLADRLAKLLMLSVNQRLNVVKLNEFKRSFG 155

Query:   171 LPEDFRDSILGKYGNDFRLVDLEIVELVNSDKNLGDALVEKWREN---EYREKWLSEFET 227
              P+D+   I+ KY + FRLV+       +  K+  +  +  W+        E    +  +
Sbjct:   156 FPDDYVIRIVPKYSDVFRLVNY------SGRKSSMEIELLLWKPELAVSAVEAAAKKCGS 209

Query:   228 NFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVV 287
               +F  + P+ +   + + E+   +   PY+ PYE   ++V      G +  EKR+V +V
Sbjct:   210 EPSFSCSLPSTWT--KPW-ERFMEFNAFPYISPYEDHGDLVE-----GSKESEKRSVGLV 261

Query:   288 HELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKHPGIFYISTKGGTQTVFLREAYSR 347
             HELLSLT+ K++ + +LSHF+++F +   +  +LLKHPGIFY+  K    TV LRE Y+ 
Sbjct:   262 HELLSLTLWKKLSIVKLSHFKREFGLPEKLNGMLLKHPGIFYVGNKYQVHTVILREGYNG 321

Query:   348 GCLIEPNPIYVVRRKMLDLVLLGCRNTKELKHLEEIKQESD 388
               LI  +P+ VV+ K  +L+  G       ++L  ++++ +
Sbjct:   322 SELIHKDPLVVVKDKFGELMQQGLYEYNHRRYLANLEKKRE 362

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2012981 AT1G71850 "AT1G71850" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 90/335 (26%), Positives = 174/335 (51%)

Query:    42 RDHQLDKLATKLRTLRTILNTHRLMSTRKRGPFVSVQIMSRWKNILGLNITMGNFLHKYP 101
             RD  LD    + + LR +L+   L+ +      V + +++  K+ L + +    F+  +P
Sbjct:    33 RDRGLDHAVEREKNLRPLLSIKDLIRSEP-AKSVPISVITSQKDSLRVPLRPIEFIRSFP 91

Query:   102 HVFHLFTHP-LNKNLCCRFTPKMENLINEEVDVI--RRCESDAVIRIKKLLLMSKSGTLH 158
              VF  F    +  +     TP++ N   +E  V      +     R+ KLL++++   + 
Sbjct:    92 SVFQEFLPGGIGIHPHISLTPEILNHDADEQLVYGSETYKQGLADRLLKLLMINRINKIP 151

Query:   159 VHALRLIRTELGLPEDFRDSILGKYGNDFRLVDLEI------VELVNSDKNLGDALVEKW 212
             +  L L++ +LGLP+D+ ++++ ++ + FR++  ++      +ELV        +++EK 
Sbjct:   152 LEILDLLKWDLGLPKDYVETMVPEFPDYFRVIKSKLRGCSGELELVCWSNEHAVSVLEK- 210

Query:   213 RENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRT 272
             +    R+   ++     AFP+ F  GF +++  ++ + +WQ+LPY+ PYE   N + +  
Sbjct:   211 KARTLRKGEYTKGSA-IAFPMKFSNGFVVDKKMKKWIDDWQKLPYISPYE---NALHLSA 266

Query:   273 CGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKHPGIFYIST 332
                 +  +K A AV+HE+++L V K+VE + + H  +   +    + +L  HPGIFY+S+
Sbjct:   267 TS--DESDKWAAAVLHEIMNLFVSKKVEKDAILHLGEFMGLRSRFKRVLHNHPGIFYLSS 324

Query:   333 KGGTQTVFLREAYSRGCLIEPNPIYVVRRKMLDLV 367
             K  T TV LR+ Y RG LIE N +   R + + L+
Sbjct:   325 KLRTHTVVLRDGYKRGMLIESNELVTSRNRYMKLM 359

GO:0005739 "mitochondrion" evidence=IDA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:2064940 WTF9 "AT2G39120" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 105/359 (29%), Positives = 173/359 (48%)

Query:    24 RRWKKAVDSAQTRL-ENRT---------RDHQLDKLATKLRT--LRTILNTHRLMSTRKR 71
             RR  K V S+ T L + RT         RD   D +   LR+  L+++++    +  ++ 
Sbjct:     5 RRHAKTVASSCTNLTQKRTYVDVYMKWKRDPYFDNIEHILRSSQLKSVVSLKNCI-VQEP 63

Query:    72 GPFVSVQIMSRWKNILGLNITMGNFLHKYPHVFHLFTHPLNKNL-CCRFTPKMENLINEE 130
                + +  +S+      ++  + +FL K+P +F  F  P   NL   R TP+   L  +E
Sbjct:    64 NRCIPISAISKKTRQFDVSTKIAHFLRKFPSIFEEFVGP-EYNLPWFRLTPEATELDRQE 122

Query:   131 VDVIRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLV 190
               V +    D   R+KKL+LMSK   L +  ++ ++  LGLP+D+         + FR V
Sbjct:   123 RVVYQTSADDLRDRLKKLILMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLDSSFRFV 182

Query:   191 DLEI-VELVNSDKNLGDALVEKWRENEYREKWLSEFETNFAFPINFPT-GFKIERGFREK 248
             D+E  V+ +  D N GD ++   ++N  +++          FP+ FP+ G ++     + 
Sbjct:   183 DMEDGVKGLAVDYNGGDKVLSVLQKNAMKKRRGEVSLEEIEFPL-FPSKGCRLRVKIEDW 241

Query:   249 LKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFR 308
             L  +Q+LPYV PY+    +            EKR V  +HELL L VE   E ++L   +
Sbjct:   242 LMEFQKLPYVSPYDDYSCLDPSSDIA-----EKRVVGFLHELLCLFVEHSAERKKLLCLK 296

Query:   309 KDFAMEVNVRELLLKHPGIFYISTKGGTQTVFLREAYSRGCLIEPNPIYVVRRKMLDLV 367
             K F +   V +   +HP IFY+S K  T T  LRE Y     +E +P+  VR+K + L+
Sbjct:   297 KHFGLPQKVHKAFERHPQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQLM 355

GO:0005739 "mitochondrion" evidence=IDA

GO:0000373 "Group II intron splicing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

GO:0017004 "cytochrome complex assembly" evidence=IMP

TAIR|locus:2207380 AT1G79120 [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 107/360 (29%), Positives = 170/360 (47%)

Query:    42 RDHQLDKLATKLRTLRTILNTHRLMSTRKRGPFVSVQIMSRWKNILGLNITMGNFLHKYP 101
             R H LDK     +    IL    ++  +K G  +   +      +   N+     + KYP
Sbjct:    64 RVHDLDKAIDLNKKPSLILQLKSIIQAQKHGSLLLRDLEKHVGFVHKWNLMAA--IEKYP 121

Query:   102 HVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHA 161
              +F++             T K + +  EE +     E   V  ++KLL+MS    + +  
Sbjct:   122 TIFYVGGGHKEPPFVM-LTEKAKKIAAEESEATESMEPILVNNLRKLLMMSVDCRVPLEK 180

Query:   162 LRLIRTELGLPEDFRDSILGKYGNDFRLVDLE-IVELV--NSDKNLG-----DALV-EKW 212
             +  I++ +GLP+DF+ +++ KY   F L  +   V LV  N D +L      D L  E +
Sbjct:   181 VEFIQSAMGLPQDFKSTLIPKYTEFFSLKVINGKVNLVLENWDSSLAITAREDRLSREGF 240

Query:   213 RENEY-REKWLSEFETNF----AFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENV 267
              E+   R++     + NF    AF I+FP GF+    + E+ + WQ++ +  PY    N 
Sbjct:   241 SESVGDRKRVRITKDGNFLGRNAFKISFPPGFRPNASYLEEFEKWQKMEFPSPYL---NA 297

Query:   268 VRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKHPGI 327
              R        R  KR VAV+HELLSLT+EKRV   +L  F  ++ +   +   L+KH GI
Sbjct:   298 RRFDAADPKAR--KRVVAVLHELLSLTMEKRVTCAQLDAFHSEYLLPSRLILCLIKHQGI 355

Query:   328 FYISTKGGTQTVFLREAYSRGCLIEPNPIYVVRRKMLDLVLLGCRNTKELKHLEEIKQES 387
             FYI+ KG   TVFL++AY+   LIE  P+ +   + + L    C   KE+    E++  S
Sbjct:   356 FYITNKGARGTVFLKDAYAGSNLIEKCPLLLFHDRFVAL----C-GRKEVNLSNEMQSSS 410

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2138738 AT4G08940 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 97/352 (27%), Positives = 173/352 (49%)

Query:    24 RRWKKAVDSAQTR-LENR-TRDHQLDKLATKLRTLRTILNTHRLMSTRKRGPFVSVQIMS 81
             ++ +K  +SA+T+ +++  T+   L+ L ++    R ++ +   +S +     + +    
Sbjct:    47 KKKRKKPESARTKSIQHESTKLPHLESLVSRDAHFRFLIRSKEFISKQPER-ILRLDDAG 105

Query:    82 RWKNILGL--NITMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCES 139
             +    LG      +  F+ K+P +F  + H   K +   FT  ME+L++EE  ++   E 
Sbjct:   106 KLYRELGFPRGRKVTKFIPKHPLIFQTYRHSDGK-IWLGFTEFMEDLLDEEKGLMESMEL 164

Query:   140 DAVIRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVD----LEIV 195
             D V  ++KLL+M+K   + +  +   R   G+PEDFRD +  KY + FR+V       ++
Sbjct:   165 DRVNCVRKLLMMTKDKRILLSKIHHTRLLFGIPEDFRDRV-AKYPDYFRVVTGGDGNRVL 223

Query:   196 ELVNSDKNLGDALVEK-WRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQR 254
             ELVN D NL  + +E+ +  +E + K +      F FP+      ++E     KL     
Sbjct:   224 ELVNWDTNLAVSELERLFMIDEDKAKRV------FKFPVKHGKELELEEKDTRKLNLLNT 277

Query:   255 LPYVKPY-EG-KENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFA 312
              P V PY +G K +V  +         EK  V +VHE L+LT+EKR  +  +  F+ +F+
Sbjct:   278 FPLVSPYSDGWKLDVWSLEA-------EKYRVGIVHEFLNLTLEKRASIHHIVEFKDEFS 330

Query:   313 MEVNVRELLLKHPGIFYISTKGGTQTVFLREAYSR-GCLIEPNPIYVVRRKM 363
             +     ++L K    FY++      TVFL++AY   G L+  +P  V   K+
Sbjct:   331 LTRQTYQMLKKQSMSFYLAGTEMNWTVFLKDAYDENGVLVSKDPQVVFNEKL 382


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.140   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      422       388   0.00093  117 3  11 22  0.48    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  257 KB (2137 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  35.42u 0.10s 35.52t   Elapsed:  00:00:02
  Total cpu time:  35.42u 0.10s 35.52t   Elapsed:  00:00:02
  Start:  Sat May 11 06:04:55 2013   End:  Sat May 11 06:04:57 2013

GO:0009507 "chloroplast" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0015824 "proline transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	LOW CONFIDENCE prediction!
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	422
pfam11955	332	pfam11955, PORR, Plant organelle RNA recognition d	1e-134

>gnl|CDD|221338 pfam11955, PORR, Plant organelle RNA recognition domain

 Score =  387 bits (996), Expect = e-134
 Identities = 156/340 (45%), Positives = 215/340 (63%), Gaps = 11/340 (3%)

Query: 40  RTRDHQLDKLATKLRTLRTILNTHRLMSTRKRGPFVSVQIMSRWKNILGLNITMGNFLHK 99
             RD  LDK   + + LR +L    L+   +    + ++ +S+ +  LGL      FL K
Sbjct: 1   WVRDPALDKAVEREKRLRLVLRLKDLLL-SQPDHSLPLRDLSKLRRQLGLPRGALAFLRK 59

Query: 100 YPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHV 159
           YP +F LF HP +  LC R TPK E+L+ EE  ++   E D V R++KLL+MSK   L +
Sbjct: 60  YPSIFELFRHPSDSVLCVRLTPKAEDLLAEEARLLESSEPDLVDRLRKLLMMSKDRRLPL 119

Query: 160 HALRLIRTELGLPEDFRDSILGKYGNDFRLVD---LEIVELVNSDKNLGDALVEKWRENE 216
             L  +R +LGLP+DFRDS++ KY + FRLVD    + +ELV+ D  L  + +EK RE E
Sbjct: 120 EKLAHLRRDLGLPDDFRDSLVPKYPDYFRLVDEDGGDGLELVSWDPELAVSALEKRREIE 179

Query: 217 YREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCGGF 276
            R       +  FAFP+ FP GFK+ + FREKL+ WQ+LPY+ PYE   ++       G 
Sbjct: 180 DR--GGDRVDRRFAFPVKFPPGFKLRKKFREKLEEWQKLPYISPYEDASHLDP-----GS 232

Query: 277 ERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKHPGIFYISTKGGT 336
           +  EKRAVAV+HELLSLTVEKR EV+ L+HFRK+F +   +R++LL+HPGIFY+STKG  
Sbjct: 233 DEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKLRKVLLRHPGIFYLSTKGKR 292

Query: 337 QTVFLREAYSRGCLIEPNPIYVVRRKMLDLVLLGCRNTKE 376
            TVFLREAY RG L+E +P+ + R K+L+L+L G R  K 
Sbjct: 293 HTVFLREAYDRGELVEKDPLVLAREKLLELMLEGKRERKR 332

This family, which was previously known as DUF860, has been shown to be a component of group II intron ribonucleoprotein particles in maize chloroplasts. The domain is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. All of the members are predicted to localise to mitochondria or chloroplasts. It seems likely that most PORR proteins function in organellar RNA metabolism. Length = 332

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	422
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	100.0
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	98.67
PLN03196	487	MOC1-like protein; Provisional	89.04

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=100.00  E-value=1e-115  Score=876.37  Aligned_cols=329  Identities=45%  Similarity=0.762  Sum_probs=317.7

Q ss_pred             ccCcchhhHHHHhhhhhHHHHHHHHHHhcCCCCCcchHHHHHhhhhccCCc-chHhhHhhhCCcceEeeccCCCCCcccc
Q 014570           40 RTRDHQLDKLATKLRTLRTILNTHRLMSTRKRGPFVSVQIMSRWKNILGLN-ITMGNFLHKYPHVFHLFTHPLNKNLCCR  118 (422)
Q Consensus        40 r~rd~~lD~~i~~~k~lr~v~~lk~li~s~p~~~~l~l~~L~k~r~~Lgl~-~~v~~FLrkyP~iF~~~~~p~~~~~~~r  118 (422)
                      |+||++||++|+++|++|+|++|+++|+++|+ +++|++.|+++++.||++ .++++||+|||+||++|.||..+++||+
T Consensus         1 w~rd~~lD~~i~~~k~l~~v~~l~~~i~~~p~-~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~   79 (335)
T PF11955_consen    1 WVRDPYLDKVIEREKRLRFVLRLKDLILSQPS-HSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFR   79 (335)
T ss_pred             CCCchhHHHHHHhhhhHHHHHHHHHHHHcCCC-CcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCceEE
Confidence            68999999999999999999999999999986 699999999999999996 7999999999999999999899999999


Q ss_pred             ccHHHHHHHHHHHHHHHhChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCChhhhhcccccCCCCeEeec----CCc
Q 014570          119 FTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVD----LEI  194 (422)
Q Consensus       119 LT~~a~~L~~eE~~v~~~~e~~~V~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~ll~kyP~~Frlv~----~~~  194 (422)
                      |||+|++|++||++|++++++++|++|+||||||.+++|||++|+|++||||||+||+++++++|||+|+||+    ..+
T Consensus        80 LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~  159 (335)
T PF11955_consen   80 LTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRY  159 (335)
T ss_pred             eCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCCE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998    368


Q ss_pred             eEEeccCCCcchhHHHhhhHHHHHHhhhcccCccccccccCCCCCccchhhHHHHHhhhcCCCCCCCCCCCcccccccCC
Q 014570          195 VELVNSDKNLGDALVEKWRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCG  274 (422)
Q Consensus       195 LeLv~Wd~~LAVs~lE~~~~~e~~ek~~~~~~~~~~Fp~~fP~Gf~l~k~~~~~l~~fQ~LPyiSPYed~~~l~~~~~~~  274 (422)
                      ||||+|||+||||++|++++.++++++......+++|||+||+||++++++++|+++||+|||+|||+|++++++     
T Consensus       160 LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~-----  234 (335)
T PF11955_consen  160 LELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDP-----  234 (335)
T ss_pred             EEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCC-----
Confidence            999999999999999999987655555556678999999999999999999999999999999999999999987     


Q ss_pred             CchhhhhHHHHHHHHHhhccchhhhhhhhHHhhhhhcCCcHHHHHHHhhCCCcEEEEeeCCeeEEEEeeccCCCCccCCC
Q 014570          275 GFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKHPGIFYISTKGGTQTVFLREAYSRGCLIEPN  354 (422)
Q Consensus       275 ~s~~~EKRaVaVlHELLSLTveKr~~v~~L~~fr~efgLp~k~~~~l~rHPgIFYvS~kg~~~TVfLREAY~~g~Liek~  354 (422)
                      +|+++|||||||+||||||||||||++++|+|||+|||||++|+++|+|||||||||+||+|+||||||||++|+|||||
T Consensus       235 ~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg~~~TVfLrEAY~~~~Liek~  314 (335)
T PF11955_consen  235 GSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIFYVSLKGKRHTVFLREAYDGGELIEKH  314 (335)
T ss_pred             CChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeEEEeccCCceEEEEeeccCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhcccch
Q 014570          355 PIYVVRRKMLDLVLLGCRNT  374 (422)
Q Consensus       355 PL~~iR~K~~~Lm~~g~r~~  374 (422)
                      ||+.+|+||++||..|++++
T Consensus       315 Pl~~~r~k~~~Lm~~~~~~~  334 (335)
T PF11955_consen  315 PLVVIREKFLELMQEGRRKR  334 (335)
T ss_pred             chHHHHHHHHHHHhhccccc
Confidence            99999999999999999875

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=98.67  E-value=6.7e-08  Score=98.28  Aligned_cols=136  Identities=27%  Similarity=0.435  Sum_probs=105.2

Q ss_pred             HHHhChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCChhhhhcccccCCCCeEeecC-----CceEEeccCCCcchh
Q 014570          133 VIRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVDL-----EIVELVNSDKNLGDA  207 (422)
Q Consensus       133 v~~~~e~~~V~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~ll~kyP~~Frlv~~-----~~LeLv~Wd~~LAVs  207 (422)
                      +..+.....|.+|+.+|.-++++.||++.+...+..|||+.-=..+++.+||..|.+...     ....|..       .
T Consensus        11 i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~-------~   83 (335)
T PF11955_consen   11 IEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTP-------E   83 (335)
T ss_pred             HHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCH-------H
Confidence            444556788999999999999999999999999999999522235799999999999763     2333311       1


Q ss_pred             HHHhhhHHHHHHhhhcccCccccccccCCCCCccchhhHHHHHhhhcCCCCCCCCCCCcccccccCCCchhhhhHHHHHH
Q 014570          208 LVEKWRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVV  287 (422)
Q Consensus       208 ~lE~~~~~e~~ek~~~~~~~~~~Fp~~fP~Gf~l~k~~~~~l~~fQ~LPyiSPYed~~~l~~~~~~~~s~~~EKRaVaVl  287 (422)
                      |.+...+    |                          ..                   +        ..+.|--+|..+
T Consensus        84 a~~L~~e----E--------------------------~~-------------------~--------~~~~e~~~v~rL  106 (335)
T PF11955_consen   84 AEDLLRE----E--------------------------RR-------------------V--------REEMEPDLVERL  106 (335)
T ss_pred             HHHHHHH----H--------------------------HH-------------------H--------HHhChHHHHHHH
Confidence            1111000    0                          00                   1        124567889999


Q ss_pred             HHHhhccchhhhhhhhHHhhhhhcCCcHHHHHHHh-hCCCcEEEEe
Q 014570          288 HELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLL-KHPGIFYIST  332 (422)
Q Consensus       288 HELLSLTveKr~~v~~L~~fr~efgLp~k~~~~l~-rHPgIFYvS~  332 (422)
                      .-||.|+..+|+.+++|.|++.+||||..|..-++ +||+.|=|..
T Consensus       107 ~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~  152 (335)
T PF11955_consen  107 RKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVD  152 (335)
T ss_pred             HHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEee
Confidence            99999999999999999999999999999988855 9999999988

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>PLN03196 MOC1-like protein; Provisional

Probab=89.04  E-value=0.28  Score=52.67  Aligned_cols=217  Identities=15%  Similarity=0.243  Sum_probs=107.7

Q ss_pred             hccCCcc-hHhhHhhhCCcceEeeccCCCCCccccccHHHHHHHHHHHHHHHhChHHHHHHHHHHhhcCCCCcccHHHHH
Q 014570           85 NILGLNI-TMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALR  163 (422)
Q Consensus        85 ~~Lgl~~-~v~~FLrkyP~iF~~~~~p~~~~~~~rLT~~a~~L~~eE~~v~~~~e~~~V~rLrKLLMMS~~rrLpL~kl~  163 (422)
                      ..+|++. .+...|.+||.|..--.+       ..|.|...-|-  ...+-.+.-..++.+--.||-++.++.|. .+++
T Consensus       132 ~~lG~s~~~i~~lI~~~P~lL~~sve-------~~L~P~v~fL~--~lGvs~~~i~~~l~r~P~LL~~~~e~~l~-p~v~  201 (487)
T PLN03196        132 EKLGVTRSSLPELLRRYPQVLHASVV-------VDLAPVVKYLQ--GLDVKRQDIPRVLERYPELLGFKLEGTMS-TSVA  201 (487)
T ss_pred             HHcCCCHHHHHHHHHhCCceecccHH-------HHHHHHHHHHH--HcCCCHHHHHHHHHhCchhhcCCHHHHHH-HHHH
Confidence            4678875 778889999998853221       23444444331  11111112233334444556666555443 4455


Q ss_pred             HHHHhcCCChhhhhcccccCCCCeEee-cC-----------------CceEEeccCCCcchhHHHhhhH--HHH-HHhhh
Q 014570          164 LIRTELGLPEDFRDSILGKYGNDFRLV-DL-----------------EIVELVNSDKNLGDALVEKWRE--NEY-REKWL  222 (422)
Q Consensus       164 ~lr~dLGLP~DF~~~ll~kyP~~Frlv-~~-----------------~~LeLv~Wd~~LAVs~lE~~~~--~e~-~ek~~  222 (422)
                      .++ ++|++.+=..+++.+||+.+... +.                 ....++...|.+--..+|.+-.  -++ .+-++
T Consensus       202 fL~-~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv  280 (487)
T PLN03196        202 YLV-SIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGV  280 (487)
T ss_pred             HHH-HcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCC
Confidence            554 56777666666777777766532 10                 1122222333322222332110  011 11111


Q ss_pred             cccCcccccc-ccCCC--CCccchhhHHHHHhhhcCCCCCCCCCCCcccccccCCCchhhhhHHHHHHHHHhhccchhhh
Q 014570          223 SEFETNFAFP-INFPT--GFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRV  299 (422)
Q Consensus       223 ~~~~~~~~Fp-~~fP~--Gf~l~k~~~~~l~~fQ~LPyiSPYed~~~l~~~~~~~~s~~~EKRaVaVlHELLSLTveKr~  299 (422)
                      ..  ..+++- ..+|.  |+.++++....+.-+++         .-++.        ++.=.++|.-+-.+|++..+|  
T Consensus       281 ~~--~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~---------~lG~s--------~e~i~~~v~k~P~il~lSe~k--  339 (487)
T PLN03196        281 RK--EALPSVIAQYPDILGLDLKAKLAEQQYWLTS---------KLKID--------PEDFGRVIEKLPQIVSLNRNV--  339 (487)
T ss_pred             CH--HHHHHHHHhCCceeEecHHHhhhHHHHHHHH---------hhCCC--------HHHHHHHHHhcchhhcccHHH--
Confidence            11  111221 13332  22234444333322221         11222        111134555566788888764  


Q ss_pred             hhhhHHhhhhhcCCcHH-HHHHHhhCCCcEEEEeeC
Q 014570          300 EVERLSHFRKDFAMEVN-VRELLLKHPGIFYISTKG  334 (422)
Q Consensus       300 ~v~~L~~fr~efgLp~k-~~~~l~rHPgIFYvS~kg  334 (422)
                      ...++..|++ +|++.+ +..|+.++|.++-.|.+.
T Consensus       340 l~~kvefL~~-~Gls~edI~~mv~k~P~lL~~S~~~  374 (487)
T PLN03196        340 ALKHVEFLRG-RGFSAQDVAKMVVRCPQILALNLEI  374 (487)
T ss_pred             HHHHHHHHHH-cCCCHHHHHHHHHhCCceeeccHHH
Confidence            3467888875 999955 889999999999999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	422
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 6e-09
 Identities = 64/445 (14%), Positives = 120/445 (26%), Gaps = 140/445 (31%)

Query: 6   SLRNRSSNLSPKFPFVEQRRWKKAVDSAQTRLENRTRDHQLDKLATKLRTLR-------- 57
             R+R  N +  F        K  V          +R     KL   L  LR        
Sbjct: 114 EQRDRLYNDNQVFA-------KYNV----------SRLQPYLKLRQALLELRPAKNVLID 156

Query: 58  -------TIL-----NTHRLMSTRKRGPFVSVQIMSRWKNILGLNITMGNFLHKYPHVFH 105
                  T +      ++++        F        W       + + N      +   
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIF--------W-------LNLKNC-----NSPE 196

Query: 106 LFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALRLI 165
                L   L  +  P   +  +   ++  R  S  +    + LL SK    + + L L+
Sbjct: 197 TVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRIHS--IQAELRRLLKSKP---YENCL-LV 249

Query: 166 RTELGLPEDFRDSILGKYGNDFRLVDLEIVELVNS-DKNLGDALVEKWREN---EYREKW 221
              L    + +++        +   +L    L+ +  K + D L      +   ++    
Sbjct: 250 ---L---LNVQNA------KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 222 LSEFETN--FA---------FP-----INFPTGFK-IERGFREKLKNWQRLPYVKPYEGK 264
           L+  E                P      N P     I    R+ L  W    +V   +  
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVN-CDKL 355

Query: 265 ENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEV----ERLSHFRKDFAMEVNVREL 320
             ++                       SL V +  E     +RLS F        ++  +
Sbjct: 356 TTIIES---------------------SLNVLEPAEYRKMFDRLSVFPPS----AHIPTI 390

Query: 321 LLKHPGIFYISTKGGTQTVFLREAYSRGCLIEPNPIYVVRRKMLDLVLLG-CRNTKELKH 379
           LL    + +         V + + +    + +      +    + L L     N   L H
Sbjct: 391 LL---SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-H 446

Query: 380 LEEIKQ-------ESDNLIGKIGDG 397
              +         +SD+LI    D 
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 6e-07
 Identities = 56/395 (14%), Positives = 118/395 (29%), Gaps = 95/395 (24%)

Query: 89  LNITMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMEN--LINEEVDVIRRCESDAVIRIK 146
           ++   G   ++Y  +  +F      N  C+    M    L  EE+D I     DAV    
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM-SKDAVSGTL 65

Query: 147 KLL-LMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVDLEIVELVNSDKNLG 205
           +L   +       V             + F + +L     +++ + +  ++      ++ 
Sbjct: 66  RLFWTLLSKQEEMV-------------QKFVEEVLRI---NYKFL-MSPIKTEQRQPSMM 108

Query: 206 DALVEKWRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPY---- 261
             +  + R+  Y          N  F     +  +     R+ L   +    V       
Sbjct: 109 TRMYIEQRDRLYN--------DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160

Query: 262 EGKE----NVVR---VRTCGGFERF------EKRAVAVVHELLSL--------------- 293
            GK     +V     V+    F+ F            V+  L  L               
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 294 -TVEKRVEV--ERLSHFRKDFAMEVNVRELL----LKHPGIF---------YISTKGGTQ 337
             ++ R+      L         +     LL    +++   +          ++T+    
Sbjct: 221 SNIKLRIHSIQAELRRL---LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 338 TVFLREAYSRGCLIEPNPIYVVRRKMLDLVL--LGCRNTKELKHLEEIKQESDNLIGKIG 395
           T FL  A +    ++ + + +   ++  L+L  L CR  ++L    E+   +   +  I 
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-PQDLP--REVLTTNPRRLSIIA 334

Query: 396 ----DGGTRGGDWVVPIFEPLKK------DNLDDN 420
               DG     +W     + L        + L+  
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00