Citrus Sinensis ID: 014647

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
MLLNTCILLECLFFLIFSSSATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGAGLSTQYAKASSVEPKSAALIDQLTMNAGVFGGHRYHFLFLIYP
ccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHccccccccccccccccccccEEEEcccccccccccccccHHHHHHccccEEEEEEEcEEEEEEEEEEEccccEEEcccccEEEEEcEEEEEcccEEEEEEcEEEEcccccccccccccccccccccccccccEEEEccccEEEEcccccccccccEEEEEccEEEEEEEEEEEccccccccccccccccccccEEEEEEEEcccccccccccccccEEEEEccEEEccccEEEEcccccEEEEEcEEEEcccccccccEEEEEccccccccccEEEEcccEEccccEEccccccccccccccccccccccccHHHHHccccccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEEEEcccEEEEEcccEEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEEcccccccEEEcccccccccccccccEEEEEccccEEEEcccHcccccccEEEEEcccEEEEEccccccccEEEEEccccccccccccEEEEEEccccccccccccccccEEEEEEEcccccEEEEEEcccccccEEccccEEEccccccccEEEEEccccccccccccEEccccEEEcccEEEccccccccccccccccccccHHHHHHHHHcccccccccccHHHcccc
MLLNTCILLECLFFLIFSSSatisslnltlphqhpdpdavaQDVQRRVNVSLSRRQALAINAqcqtgnpiddcwhcdpnwaanRQRLAdcsvgfaqgtlggkggqiyvvtdssdsdpanptpgtlrhaviqtEPIWITFASNMLIKLKHELIINSYktidgrganveitgnGCLTLQYVSHVIIHNvhihhckpsgntmiasspthvgyrgksdgdgisifgsqkiwvdhcslsyctdglidaimgstgitisnnyfsHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQrmprcrrgyihvvnndftSWEMYAiggsanptinsqgnrytappddnakEVTKRVetdesewagwnwrtegdvmvngaffvpsgaglstqyakassvepksaaLIDQLTmnagvfgghrYHFLFLIYP
MLLNTCILLECLFFLIFSSSATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRvetdesewagwnwrtegDVMVNGAFFVPSGAGLSTQYAKASSVEPKSAALIDQLTMNAGVFGGHRYHFLFLIYP
MLLNTcilleclfflifsssATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYvshviihnvhihhCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGAGLSTQYAKASSVEPKSAALIDQLTMNAGVFGGHRYHFLFLIYP
**LNTCILLECLFFLIFSSSATISSLNLTL*****************VNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVT**************LRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGS********************************EWAGWNWRTEGDVMVNGAFFVPSGAGLSTQYA********SAALIDQLTMNAGVFGGHRYHFLFLIY*
***NTCILLECLFFLIFSSSATISSLNLT**HQHPDPDAVAQDVQR*****************CQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGAGLSTQYAKASSVEPKSAALIDQLTMNAGVFGGHRYHFLFLIYP
MLLNTCILLECLFFLIFSSSATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPD**************SEWAGWNWRTEGDVMVNGAFFVPSGAGL************KSAALIDQLTMNAGVFGGHRYHFLFLIYP
*LLNTCILLECLFFLIFSSSATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSG***********SVEPKS*A*IDQ******VFGGHRYHFLFLIYP
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLLNTCILLECLFFLIFSSSATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGAGLSTQYAKASSVEPKSAALIDQLTMNAGVFGGHRYHFLFLIYP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query421 2.2.26 [Sep-21-2011]
Q93Z04501 Probable pectate lyase 13 no no 0.897 0.754 0.717 1e-171
Q9SCP2483 Probable pectate lyase 12 no no 0.969 0.844 0.696 1e-164
Q944R1470 Probable pectate lyase 15 no no 0.888 0.795 0.627 1e-148
Q940Q1431 Probable pectate lyase 1 no no 0.961 0.939 0.588 1e-141
Q93Z25432 Probable pectate lyase 22 no no 0.862 0.840 0.626 1e-139
Q9FXD8408 Probable pectate lyase 5 no no 0.876 0.904 0.632 1e-138
Q9M8Z8416 Probable pectate lyase 8 no no 0.950 0.961 0.580 1e-137
Q9LRM5452 Probable pectate lyase 9 no no 0.935 0.871 0.564 1e-135
Q9C5M8408 Probable pectate lyase 18 no no 0.933 0.963 0.593 1e-133
Q9LJ42440 Probable pectate lyase 10 no no 0.890 0.852 0.591 1e-132
>sp|Q93Z04|PLY13_ARATH Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1 Back     alignment and function desciption
 Score =  601 bits (1549), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 287/400 (71%), Positives = 331/400 (82%), Gaps = 22/400 (5%)

Query: 26  LNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQ-----------ALAINAQCQTGNPIDDCW 74
           LNLTLPHQHP PD+VA  V R VN SL+RRQ           + + ++ C+TGNPIDDCW
Sbjct: 26  LNLTLPHQHPSPDSVALHVIRSVNESLARRQLSSPSSSSSSSSSSSSSSCRTGNPIDDCW 85

Query: 75  HC-DPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTE 133
            C D +W+ NRQRLADCS+GF  GTLGGK G+IYVVTDSSD++P NPTPGTLR+ VIQ E
Sbjct: 86  RCSDADWSTNRQRLADCSIGFGHGTLGGKNGKIYVVTDSSDNNPTNPTPGTLRYGVIQEE 145

Query: 134 PIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCK 193
           P+WI F+SNMLI+LK ELIINSYKT+DGRG+ V ITGNGCLTLQYV H+IIHN+HI+ CK
Sbjct: 146 PLWIVFSSNMLIRLKQELIINSYKTLDGRGSAVHITGNGCLTLQYVQHIIIHNLHIYDCK 205

Query: 194 PSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253
           PS              RG+SDGDGISIFGSQKIWVDHCS+S+CTDGLIDA+MGST ITIS
Sbjct: 206 PSAG---------FEKRGRSDGDGISIFGSQKIWVDHCSMSHCTDGLIDAVMGSTAITIS 256

Query: 254 NNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSW 313
           NNYF+HH+EVMLLGH+D YA D GMQVTIAFNHFG  LVQRMPRCRRGYIHVVNNDFT W
Sbjct: 257 NNYFTHHDEVMLLGHDDNYAPDTGMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNNDFTEW 316

Query: 314 EMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVET-DESEWAGWNWRTEGDVMVNGAF 372
           +MYAIGGS NPTINSQGNRY+AP D +AKEVTKRV++ D+ EW+ WNWRTEGD+M NGAF
Sbjct: 317 KMYAIGGSGNPTINSQGNRYSAPSDPSAKEVTKRVDSKDDGEWSNWNWRTEGDLMENGAF 376

Query: 373 FVPSGAGLSTQYAKASSVEPKSAALIDQLTMNAGVFGGHR 412
           FV SG G+S+ Y+KASSV+PK+A+L+DQLT NAGVFGG R
Sbjct: 377 FVASGEGMSSMYSKASSVDPKAASLVDQLTRNAGVFGGPR 416
Susceptibility factor required for infection by most powdery mildews, but not by unrelated pathogens. Exact function not known, but clearly affects cell wall composition.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|Q9SCP2|PLY12_ARATH Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2 Back     alignment and function description
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function description
>sp|Q940Q1|PLY1_ARATH Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2 Back     alignment and function description
>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2 Back     alignment and function description
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function description
>sp|Q9LRM5|PLY9_ARATH Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5M8|PLY18_ARATH Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2 Back     alignment and function description
>sp|Q9LJ42|PLY10_ARATH Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query421
315272010496 pectate lyase-like protein 1 [Vitis vini 1.0 0.848 0.778 0.0
225448952496 PREDICTED: probable pectate lyase 12 [Vi 1.0 0.848 0.774 0.0
255586803503 Pectate lyase precursor, putative [Ricin 0.971 0.813 0.817 0.0
224113127415 predicted protein [Populus trichocarpa] 0.964 0.978 0.808 0.0
449449503411 PREDICTED: probable pectate lyase 13-lik 0.904 0.927 0.765 1e-180
449465310489 PREDICTED: probable pectate lyase 12-lik 0.973 0.838 0.714 1e-179
356575512502 PREDICTED: probable pectate lyase 12-lik 0.971 0.814 0.741 1e-179
449532741418 PREDICTED: LOW QUALITY PROTEIN: probable 0.947 0.954 0.724 1e-176
42567636518 pectate lyase family protein [Arabidopsi 0.959 0.779 0.730 1e-175
449533102370 PREDICTED: probable pectate lyase 12-lik 0.859 0.978 0.787 1e-175
>gi|315272010|gb|ADU02586.1| pectate lyase-like protein 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/425 (77%), Positives = 362/425 (85%), Gaps = 4/425 (0%)

Query: 1   MLLNTCILLECLFFLIFSSSATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAI 60
           ML NTCILL CL   +        +LNLTLPHQHP+P+ V  +VQRR+NVS+SRRQ L++
Sbjct: 1   MLPNTCILLLCLLCSLSPLIRATLNLNLTLPHQHPNPEVVVDEVQRRLNVSISRRQVLSV 60

Query: 61  N----AQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSD 116
                + C TGNP+DDCW CDPNW  NRQRLADC +GF Q  +GGKGGQ YVVTDSSD D
Sbjct: 61  QENDGSSCLTGNPVDDCWRCDPNWQNNRQRLADCGIGFGQDAMGGKGGQFYVVTDSSDED 120

Query: 117 PANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTL 176
           P NP PGTLRHAVIQT+P+WITF++NMLIKLK+ELI+NS+KTIDGRGANV ITG GC+TL
Sbjct: 121 PINPAPGTLRHAVIQTQPLWITFSTNMLIKLKYELIVNSFKTIDGRGANVHITGRGCMTL 180

Query: 177 QYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYC 236
           QYVS+VIIH VH+HHC PSGN  I SSPTHVG+RGKSDGDGISIFGS+KIW+DHCSLSYC
Sbjct: 181 QYVSNVIIHGVHVHHCVPSGNADIRSSPTHVGWRGKSDGDGISIFGSRKIWIDHCSLSYC 240

Query: 237 TDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMP 296
            DGLIDAIMGSTGITISNNYFSHH+EVMLLGH+DKY+ D GMQVTIAFNHFG  LVQRMP
Sbjct: 241 RDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDKYSPDSGMQVTIAFNHFGEGLVQRMP 300

Query: 297 RCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDESEWA 356
           RCRRGYIHVVNNDFT WEMYAIGGSANPTINSQGNRYTAP D NAKEVTKRVETDE +WA
Sbjct: 301 RCRRGYIHVVNNDFTRWEMYAIGGSANPTINSQGNRYTAPGDINAKEVTKRVETDEEDWA 360

Query: 357 GWNWRTEGDVMVNGAFFVPSGAGLSTQYAKASSVEPKSAALIDQLTMNAGVFGGHRYHFL 416
            WNWRTEGDVMVNGAFFVPSG GLSTQYAKASSVEPKSAALI QLTMNAG   G R   +
Sbjct: 361 EWNWRTEGDVMVNGAFFVPSGVGLSTQYAKASSVEPKSAALIQQLTMNAGALSGSRDDSM 420

Query: 417 FLIYP 421
            L YP
Sbjct: 421 GLSYP 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225448952|ref|XP_002268818.1| PREDICTED: probable pectate lyase 12 [Vitis vinifera] gi|296085972|emb|CBI31413.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255586803|ref|XP_002534016.1| Pectate lyase precursor, putative [Ricinus communis] gi|223525981|gb|EEF28369.1| Pectate lyase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224113127|ref|XP_002316399.1| predicted protein [Populus trichocarpa] gi|222865439|gb|EEF02570.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449449503|ref|XP_004142504.1| PREDICTED: probable pectate lyase 13-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449465310|ref|XP_004150371.1| PREDICTED: probable pectate lyase 12-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356575512|ref|XP_003555884.1| PREDICTED: probable pectate lyase 12-like [Glycine max] Back     alignment and taxonomy information
>gi|449532741|ref|XP_004173339.1| PREDICTED: LOW QUALITY PROTEIN: probable pectate lyase 12-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|42567636|ref|NP_196051.2| pectate lyase family protein [Arabidopsis thaliana] gi|332003342|gb|AED90725.1| pectate lyase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449533102|ref|XP_004173516.1| PREDICTED: probable pectate lyase 12-like, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query421
TAIR|locus:2179949518 AT5G04310 [Arabidopsis thalian 0.916 0.745 0.722 1.1e-160
TAIR|locus:2082667501 PMR6 "powdery mildew resistant 0.897 0.754 0.697 2.3e-151
TAIR|locus:2101998483 AT3G53190 [Arabidopsis thalian 0.916 0.799 0.693 7.9e-149
TAIR|locus:2005487470 AT4G13710 [Arabidopsis thalian 0.888 0.795 0.609 1e-130
TAIR|locus:2197808431 AT1G04680 [Arabidopsis thalian 0.888 0.867 0.603 9.3e-130
TAIR|locus:2008550408 AT1G67750 [Arabidopsis thalian 0.871 0.899 0.617 6.6e-129
TAIR|locus:2121914408 AT4G24780 [Arabidopsis thalian 0.881 0.909 0.599 1.4e-128
TAIR|locus:2161992432 AT5G63180 [Arabidopsis thalian 0.914 0.891 0.585 5.9e-128
TAIR|locus:2077622416 AT3G07010 [Arabidopsis thalian 0.885 0.896 0.596 2.9e-126
TAIR|locus:2154384417 AT5G48900 [Arabidopsis thalian 0.900 0.908 0.577 2.4e-124
TAIR|locus:2179949 AT5G04310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1565 (556.0 bits), Expect = 1.1e-160, P = 1.1e-160
 Identities = 287/397 (72%), Positives = 325/397 (81%)

Query:    24 SSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQ-----------CQTGNPIDD 72
             S  NL+LPHQHP P+ V  +VQR++N SLSRRQ L                C TGNPIDD
Sbjct:    40 SIFNLSLPHQHPFPEHVVLNVQRKLNDSLSRRQLLTYQQDDGTTASSPIPSCITGNPIDD 99

Query:    73 CWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQT 132
             CW CDPNW+ANRQRLADCS+GF QGTLGGKGGQ Y+VTDSSD+D ANP PGTLRHAVIQ 
Sbjct:   100 CWRCDPNWSANRQRLADCSIGFGQGTLGGKGGQFYLVTDSSDNDAANPIPGTLRHAVIQP 159

Query:   133 EPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYXXXXXXXXXXXXXC 192
             EP+WI F+S+M IKLKHELII SYKTIDGRG N++ITG+GCLT+Q              C
Sbjct:   160 EPLWIIFSSDMGIKLKHELIIGSYKTIDGRGTNIQITGHGCLTIQQVSHVIIHNVHIHHC 219

Query:   193 KPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITI 252
             KPSGNT++ASSPTHVG+RG SDGDGIS+  S  IWVDHCSL YC DGLID I+ ST +TI
Sbjct:   220 KPSGNTLVASSPTHVGFRGVSDGDGISVSASHHIWVDHCSLGYCADGLIDVILASTAVTI 279

Query:   253 SNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTS 312
             SNNYFSHH+EVMLLGH+D+Y  D GMQVTIAFNHFG  LVQRMPRCR GYIHVVNNDFT+
Sbjct:   280 SNNYFSHHDEVMLLGHDDRYTADKGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTA 339

Query:   313 WEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDESEWAGWNWRTEGDVMVNGAF 372
             WEMYAIGGSA+PTINSQGNRYTAP D NAKEVTKRV+++E  W+GWNWRTEGDVMVNGAF
Sbjct:   340 WEMYAIGGSASPTINSQGNRYTAPIDPNAKEVTKRVDSNEKHWSGWNWRTEGDVMVNGAF 399

Query:   373 FVPSGAGLSTQYAKASSVEPKSAALIDQLTMNAGVFG 409
             FVPSG G+S  YA+A+SV+PK+AA+IDQLT+NAGVFG
Sbjct:   400 FVPSGDGVSPAYARATSVQPKAAAIIDQLTVNAGVFG 436
GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0030570 "pectate lyase activity" evidence=ISS
GO:0031225 "anchored to membrane" evidence=TAS
TAIR|locus:2082667 PMR6 "powdery mildew resistant 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101998 AT3G53190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197808 AT1G04680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121914 AT4G24780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P40972PLY_TOBAC4, ., 2, ., 2, ., 20.52290.81940.8690N/Ano
P40973PLY_LILLO4, ., 2, ., 2, ., 20.50110.94290.9147N/Ano
O24554PLY_ZINEL4, ., 2, ., 2, ., 20.59400.87410.9177N/Ano
P24396PLY18_SOLLC4, ., 2, ., 2, ., 20.59510.87640.9133N/Ano
P81294MPAJ1_JUNASNo assigned EC number0.50420.80280.9209N/Ano
Q9LLT1MPAJ1_JUNVINo assigned EC number0.50420.80280.9209N/Ano
P15722PLY59_SOLLC4, ., 2, ., 2, ., 20.51800.90730.8507N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.20.963
4th Layer4.2.2.20.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
smart00656190 smart00656, Amb_all, Amb_all domain 5e-78
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 8e-68
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 1e-29
pfam13229157 pfam13229, Beta_helix, Right handed beta helix reg 0.002
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  239 bits (612), Expect = 5e-78
 Identities = 105/207 (50%), Positives = 125/207 (60%), Gaps = 28/207 (13%)

Query: 142 NMLIKLK--HELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTM 199
           ++ I L     +IINS KTIDGRG+ VEI G G LT++ VS+VII N+ IH  KP     
Sbjct: 1   DVTITLDNAGTIIINSNKTIDGRGSKVEIKG-GGLTIKSVSNVIIRNLTIHDPKPVY--- 56

Query: 200 IASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCT---------DGLIDAIMGSTGI 250
                        SDGD ISI GS  +W+DH SLS CT         DGLID   GST +
Sbjct: 57  ------------GSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYV 104

Query: 251 TISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDF 310
           TISNNYF +H +VMLLGH+D    D  M+VTIA N+FG  L QR PR R GY+HV NN +
Sbjct: 105 TISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVRFGYVHVYNNYY 163

Query: 311 TSWEMYAIGGSANPTINSQGNRYTAPP 337
           T W  YAIGG    TI S+GN + AP 
Sbjct: 164 TGWTSYAIGGRMGATILSEGNYFEAPI 190

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 421
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
smart00656190 Amb_all Amb_all domain. 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.99
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.45
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.34
PLN02218431 polygalacturonase ADPG 98.3
PLN03003456 Probable polygalacturonase At3g15720 98.3
PLN02188404 polygalacturonase/glycoside hydrolase family prote 98.24
PLN02793443 Probable polygalacturonase 98.21
PLN02155394 polygalacturonase 98.09
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.99
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.97
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.95
PLN02218431 polygalacturonase ADPG 97.92
PLN03010409 polygalacturonase 97.88
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.88
PLN03003456 Probable polygalacturonase At3g15720 97.72
PLN03010409 polygalacturonase 97.59
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.42
PLN02155394 polygalacturonase 97.4
PLN02480343 Probable pectinesterase 97.29
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.27
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.25
PLN02197588 pectinesterase 97.24
PLN02793443 Probable polygalacturonase 97.22
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.16
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.13
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.99
PLN02682369 pectinesterase family protein 96.88
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.82
PF0443156 Pec_lyase_N: Pectate lyase, N terminus; InterPro: 96.8
PLN02304379 probable pectinesterase 96.57
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 96.57
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 96.54
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 96.53
PLN02176340 putative pectinesterase 96.53
PLN02665366 pectinesterase family protein 96.44
smart00656190 Amb_all Amb_all domain. 96.26
PLN02432293 putative pectinesterase 96.05
PLN02416541 probable pectinesterase/pectinesterase inhibitor 96.03
PLN02506537 putative pectinesterase/pectinesterase inhibitor 96.0
PLN02773317 pectinesterase 95.94
PLN02484587 probable pectinesterase/pectinesterase inhibitor 95.89
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 95.88
PLN02201520 probable pectinesterase/pectinesterase inhibitor 95.83
PLN02488509 probable pectinesterase/pectinesterase inhibitor 95.82
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.76
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 95.71
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.68
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.67
PLN02217670 probable pectinesterase/pectinesterase inhibitor 95.61
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 95.57
PLN02916502 pectinesterase family protein 95.52
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 95.5
PLN02634359 probable pectinesterase 95.5
PLN02301548 pectinesterase/pectinesterase inhibitor 95.4
PLN02314586 pectinesterase 95.39
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.28
PLN02497331 probable pectinesterase 95.2
PLN02468565 putative pectinesterase/pectinesterase inhibitor 95.15
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 95.13
PLN02313587 Pectinesterase/pectinesterase inhibitor 94.88
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 94.5
PLN02671359 pectinesterase 94.45
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 94.36
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 93.34
PRK10531422 acyl-CoA thioesterase; Provisional 92.49
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 91.86
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 90.11
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 88.92
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 88.57
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 82.07
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-54  Score=419.39  Aligned_cols=273  Identities=30%  Similarity=0.361  Sum_probs=222.0

Q ss_pred             CCCCCCCCCcEEEEcCCCCCCCCCCCchhHHHHHhcCCCeEEEEecceEEeec------ceEEecCCcEEEeecceEEEe
Q 014647           96 QGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLK------HELIINSYKTIDGRGANVEIT  169 (421)
Q Consensus        96 ~~ttGG~gG~vy~VT~~~D~~~~~p~pGsLR~av~~~~P~~IvF~~~g~I~l~------~~L~I~snkTI~G~ga~i~I~  169 (421)
                      .+||||.+|++++|.+.+|          |...+...+|.++|.-+.|+|++.      .+|.+.|||||.|.|++.+|.
T Consensus        46 ~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~  115 (345)
T COG3866          46 TGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV  115 (345)
T ss_pred             CCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE
Confidence            3799999999999999887          677788888886666667899876      467778999999999999999


Q ss_pred             cceEEEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceee-eCCccEEEEeEEEec--------CCCCe
Q 014647          170 GNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISI-FGSQKIWVDHCSLSY--------CTDGL  240 (421)
Q Consensus       170 ggg~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i-~gs~nVWIDHcs~s~--------~~DGl  240 (421)
                      |++ |.|+.+.|||||||+|++.. +++.               ..|+|+| .+++|||||||+|+.        ..||+
T Consensus       116 g~g-l~i~~a~NVIirNltf~~~~-~~d~---------------~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl  178 (345)
T COG3866         116 GGG-LKIRDAGNVIIRNLTFEGFY-QGDP---------------NYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGL  178 (345)
T ss_pred             ece-EEEEeCCcEEEEeeEEEeec-cCCC---------------CCCcEEeccCCeEEEEEeeEeccccccccccCCCcc
Confidence            998 99999999999999999864 2321               2699999 579999999999999        78999


Q ss_pred             eeeeeCCceEEEEceEeccCCeeeeecCCCcccCCCC-ceEEEEceEecCCCcCcCcccCCCeEEEEcceEeCCc--cee
Q 014647          241 IDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWE--MYA  317 (421)
Q Consensus       241 iDv~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g-~~VTihhN~f~~n~~~R~Pr~R~G~~Hv~NN~y~~~~--~ya  317 (421)
                      +|+++++++||||||+|++|+|.+|+|.+|+...|.| .+||+|||+| +|+.||+||+|||.+||+||||....  .||
T Consensus       179 ~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a  257 (345)
T COG3866         179 VDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVA  257 (345)
T ss_pred             EEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceE
Confidence            9999999999999999999999999999998655555 8999999999 68999999999999999999999654  466


Q ss_pred             ecCCCCceEEeeCcEEeCCCCCCccceeeecccCccccCCceeeccCceEEeceeeecCCCC------CCccCCCCCcee
Q 014647          318 IGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGAG------LSTQYAKASSVE  391 (421)
Q Consensus       318 igg~~~~~i~~egN~F~~~~~~~~k~vt~r~~~~~~~~~~~~~~s~Gd~~~nG~~f~~sg~~------~~~~~~~~~~~~  391 (421)
                      ++-+..++|++|+|||+....+..---+++.  +      -.|..     -+|++|..++..      .+..+...|+++
T Consensus       258 ~~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~--~------GY~~~-----d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Yt  324 (345)
T COG3866         258 ITIGTSAKIYVENNYFENGSEGLGFLDTKGT--S------GYANQ-----DSGSYLNSSKSMSVRAGGVTWNPSSYYSYT  324 (345)
T ss_pred             EeeccceEEEEecceeccCCCCceeeecCCc--c------ceEEe-----ccCceecccCCcccccCCccCCCCCCcccc
Confidence            6666669999999999997554321111111  0      11221     345555554422      344567788899


Q ss_pred             cCChhhH-HHHhhccCCcc
Q 014647          392 PKSAALI-DQLTMNAGVFG  409 (421)
Q Consensus       392 ~~~~~~v-~~~t~~AG~~~  409 (421)
                      +.|++.| +.||++||+.+
T Consensus       325 vd~~~dVks~Vt~yAGaGk  343 (345)
T COG3866         325 VDPPEDVKSFVTNYAGAGK  343 (345)
T ss_pred             cCChHHhhhhhhcccccee
Confidence            9998888 99999999754

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 2e-86
3zsc_A340 Catalytic Function And Substrate Recognition Of The 5e-14
1jrg_A361 Crystal Structure Of The R3 Form Of Pectate Lyase A 3e-13
1ooc_A361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 4e-12
1vbl_A416 Structure Of The Thermostable Pectate Lyase Pl 47 L 2e-10
1bn8_A420 Bacillus Subtilis Pectate Lyase Length = 420 3e-10
3krg_A399 Structural Insights Into Substrate Specificity And 5e-10
2bsp_A420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 8e-10
2nzm_A399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 2e-09
2qx3_A330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 7e-08
1pcl_A355 Unusual Structural Features In The Parallel Beta-He 2e-07
2qxz_A330 Pectate Lyase R236f From Xanthomonas Campestris Len 8e-07
2qy1_A330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 8e-07
3vmv_A326 Crystal Structure Of Pectate Lyase Bsp165pela From 6e-06
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  315 bits (808), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 169/350 (48%), Positives = 218/350 (62%), Gaps = 17/350 (4%)
Query: 68  NPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRH 127
           NPID CW  D NW  NR +LADC+VGF   T+GGKGG  Y VT S+D +P NPTPGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVT-STDDNPVNPTPGTLRY 60
Query: 128 AVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNG--CLTLQYXXXXXXX 185
              + + +WI F+ NM IKLK  L +  +KTIDGRGA+V + GNG  CL ++        
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHL-GNGGPCLFMRKVSHVILH 119
Query: 186 XXXXXXCKPS--GNTMIASS----PTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDG 239
                 C  S  G+ +++ S    P H       DGD I++      W+DH SLS C+DG
Sbjct: 120 SLHIHGCNTSVLGDVLVSESIGVEPVHA-----QDGDAITMRNVTNAWIDHNSLSDCSDG 174
Query: 240 LIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR 299
           LID  +GSTGITISNN+F +H++VMLLGH+D Y  D  M+VT+AFN FG    QRMPR R
Sbjct: 175 LIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRAR 234
Query: 300 RGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDE-SEWAGW 358
            G +HV NN++  W +YAIGGS+NPTI S+GN +TAP +   KEVTKR+  +  S  A W
Sbjct: 235 YGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANW 294
Query: 359 NWRTEGDVMVNGAFFVPSGAGLSTQ-YAKASSVEPKSAALIDQLTMNAGV 407
            WR+  D  +NGA+FV SG    T  Y    + + ++     QLT NAGV
Sbjct: 295 VWRSTRDAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGV 344
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 1e-135
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 1e-91
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 1e-89
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 2e-83
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 5e-80
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 4e-70
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 5e-70
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 4e-68
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 5e-67
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 4e-65
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 7e-60
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 3e-05
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  391 bits (1006), Expect = e-135
 Identities = 173/344 (50%), Positives = 223/344 (64%), Gaps = 5/344 (1%)

Query: 68  NPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRH 127
           NPID CW  D NW  NR +LADC+VGF   T+GGKGG  Y VT + D +P NPTPGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60

Query: 128 AVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNG-CLTLQYVSHVIIHN 186
              + + +WI F+ NM IKLK  L +  +KTIDGRGA+V +   G CL ++ VSHVI+H+
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 187 VHIHHCKPSGNTMIASSPT-HVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIM 245
           +HIH C  S    +  S +  V      DGD I++      W+DH SLS C+DGLID  +
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 246 GSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHV 305
           GSTGITISNN+F +H++VMLLGH+D Y  D  M+VT+AFN FG    QRMPR R G +HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 306 VNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETD-ESEWAGWNWRTEG 364
            NN++  W +YAIGGS+NPTI S+GN +TAP +   KEVTKR+  +  S  A W WR+  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 365 DVMVNGAFFVPSGAGLSTQ-YAKASSVEPKSAALIDQLTMNAGV 407
           D  +NGA+FV SG    T  Y    + + ++     QLT NAGV
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGV 344
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query421
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.58
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.51
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.5
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.49
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.47
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.38
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 98.35
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.33
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 98.15
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 98.11
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 98.11
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 98.1
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 98.09
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.09
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.01
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.93
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.87
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 97.76
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.75
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.73
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.59
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.55
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.53
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.48
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.37
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.29
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.29
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 97.28
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.21
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 97.17
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.13
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.08
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.05
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.01
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 96.9
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.89
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 96.87
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 96.83
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 96.65
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.55
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.43
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.3
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 96.29
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.2
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.18
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.38
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 95.14
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.05
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 94.71
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 94.3
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 93.98
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 93.44
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 93.14
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 92.74
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 90.66
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 90.28
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 84.02
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 83.31
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 83.28
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 81.68
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 81.64
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=6e-98  Score=752.66  Aligned_cols=342  Identities=50%  Similarity=0.874  Sum_probs=324.0

Q ss_pred             CCccccccccCcchhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhHHHHHhcCCCeEEEEecceEEe
Q 014647           67 GNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIK  146 (421)
Q Consensus        67 g~p~d~~~r~~~~w~~~~~~la~~a~GfG~~ttGG~gG~vy~VT~~~D~~~~~p~pGsLR~av~~~~P~~IvF~~~g~I~  146 (421)
                      +||||+||||+++|+.+||+||.||+|||++||||+||++|+||+++| ++++|+|||||+|+++++|+||||+++|+|+
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d-~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~   79 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccEEEECChHH-cccccCcchhHHHhccCCCeEEEEcCCcEEe
Confidence            699999999999999999999999999999999999999999999876 5899999999999999999999999999999


Q ss_pred             ecceEEecCCcEEEeecceEEEec-ceEEEEeeeccEEEEeeEEEecccCCCcee-eCCCCccccCcCCCCCceeeeCCc
Q 014647          147 LKHELIINSYKTIDGRGANVEITG-NGCLTLQYVSHVIIHNVHIHHCKPSGNTMI-ASSPTHVGYRGKSDGDGISIFGSQ  224 (421)
Q Consensus       147 l~~~L~I~snkTI~G~ga~i~I~g-gg~i~i~~a~NVIIrnL~ir~~~~~~~~~i-~~~~~~~g~r~~sdgDaI~i~gs~  224 (421)
                      |+++|+|+|||||+|||++++|.| +.+|++++++|||||||+|+++.+.++..| ++.+.++|.+...++|||+|++++
T Consensus        80 l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~  159 (346)
T 1pxz_A           80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             cCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCc
Confidence            999999999999999999999998 446999999999999999999988887767 888888888888899999999999


Q ss_pred             cEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccCCeeeeecCCCcccCCCCceEEEEceEecCCCcCcCcccCCCeEE
Q 014647          225 KIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIH  304 (421)
Q Consensus       225 nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTihhN~f~~n~~~R~Pr~R~G~~H  304 (421)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|+||+|++|+...|..++||+|||+|++++.+|+||+|+|++|
T Consensus       160 nVwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~h  239 (346)
T 1pxz_A          160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEE
Confidence            99999999999999999999999999999999999999999999998877777999999999966789999999999999


Q ss_pred             EEcceEeCCcceeecCCCCceEEeeCcEEeCCCCCCccceeeecccC-ccccCCceeeccCceEEeceeeecCCCCCCc-
Q 014647          305 VVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETD-ESEWAGWNWRTEGDVMVNGAFFVPSGAGLST-  382 (421)
Q Consensus       305 v~NN~y~~~~~yaigg~~~~~i~~egN~F~~~~~~~~k~vt~r~~~~-~~~~~~~~~~s~Gd~~~nG~~f~~sg~~~~~-  382 (421)
                      ++||||++|++|++++++++++++|||||++++++..|+|++|..++ +.+|++|+|+++||+|+||++|.+||.+... 
T Consensus       240 v~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~~~~~~~~~~~~~~g~~~~nG~~~~~s~~~~~~~  319 (346)
T 1pxz_A          240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EEeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEeccCCccccccccEecCCCeEEeceEecCCCCCccCC
Confidence            99999999999999999999999999999999999899999999877 6789999999999999999999999976544 


Q ss_pred             cCCCCCceecCChhhHHHHhhccCCcc
Q 014647          383 QYAKASSVEPKSAALIDQLTMNAGVFG  409 (421)
Q Consensus       383 ~~~~~~~~~~~~~~~v~~~t~~AG~~~  409 (421)
                      +|+++|+++++|+++|.+||++||+|.
T Consensus       320 ~y~~~~~~~~~~~~~v~~~~~~aG~~~  346 (346)
T 1pxz_A          320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             CCCcccccccCCHHHHHHHhhhccCCC
Confidence            599999999999999999999999984
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 421
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-139
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 2e-89
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 1e-68
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 4e-65
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 3e-60
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 2e-42
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  400 bits (1028), Expect = e-139
 Identities = 173/344 (50%), Positives = 222/344 (64%), Gaps = 5/344 (1%)

Query: 68  NPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRH 127
           NPID CW  D NW  NR +LADC+VGF   T+GGKGG  Y VT + D +P NPTPGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60

Query: 128 AVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNG-CLTLQYVSHVIIHN 186
              + + +WI F+ NM IKLK  L +  +KTIDGRGA+V +   G CL ++ VSHVI+H+
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 187 VHIHHCKPSGNTMIASSP-THVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIM 245
           +HIH C  S    +  S    V      DGD I++      W+DH SLS C+DGLID  +
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 246 GSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHV 305
           GSTGITISNN+F +H++VMLLGH+D Y  D  M+VT+AFN FG    QRMPR R G +HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 306 VNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETD-ESEWAGWNWRTEG 364
            NN++  W +YAIGGS+NPTI S+GN +TAP +   KEVTKR+  +  S  A W WR+  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 365 DVMVNGAFFVPSGAGLSTQ-YAKASSVEPKSAALIDQLTMNAGV 407
           D  +NGA+FV SG    T  Y    + + ++     QLT NAGV
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGV 344
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query421
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.59
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 98.36
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 98.25
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 98.07
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 98.0
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 97.93
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.85
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.73
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 97.64
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.31
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 96.8
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 96.68
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.66
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.65
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.58
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 96.48
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.37
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.16
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 95.94
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 95.8
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.74
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 95.66
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.63
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 95.43
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.78
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 93.77
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 93.48
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 89.04
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=1.4e-91  Score=703.97  Aligned_cols=342  Identities=50%  Similarity=0.870  Sum_probs=309.5

Q ss_pred             CCccccccccCcchhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhHHHHHhcCCCeEEEEecceEEe
Q 014647           67 GNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIK  146 (421)
Q Consensus        67 g~p~d~~~r~~~~w~~~~~~la~~a~GfG~~ttGG~gG~vy~VT~~~D~~~~~p~pGsLR~av~~~~P~~IvF~~~g~I~  146 (421)
                      .||||+||||+|+|+++||+||+||+|||++||||+||+||+|||++| ++++|+|||||+|++|++||||||+++|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D-~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~   79 (346)
T d1pxza_           1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceEEEecChhh-ccccCCCccHHHHhhCCCCeEEEEeccEEEe
Confidence            489999999999999999999999999999999999999999999977 5789999999999999999999999999999


Q ss_pred             ecceEEecCCcEEEeecceEEEecc-eEEEEeeeccEEEEeeEEEecccCCCceeeCCC-CccccCcCCCCCceeeeCCc
Q 014647          147 LKHELIINSYKTIDGRGANVEITGN-GCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSP-THVGYRGKSDGDGISIFGSQ  224 (421)
Q Consensus       147 l~~~L~I~snkTI~G~ga~i~I~gg-g~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~-~~~g~r~~sdgDaI~i~gs~  224 (421)
                      |+++|.|+|||||+|||++++|.+. .+|++..++|||||||+||++.+.....+...+ .+.+.+..+++|+|++.+++
T Consensus        80 l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~~s~  159 (346)
T d1pxza_          80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             ccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeeecCc
Confidence            9999999999999999999999863 358898999999999999998765443332221 12233446789999999999


Q ss_pred             cEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccCCeeeeecCCCcccCCCCceEEEEceEecCCCcCcCcccCCCeEE
Q 014647          225 KIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIH  304 (421)
Q Consensus       225 nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTihhN~f~~n~~~R~Pr~R~G~~H  304 (421)
                      |||||||+|+|+.||++|+.+++++||||||+|++|+|+||+|+++....+.+++||||||+|.++..+|+|++|+|++|
T Consensus       160 nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~h  239 (346)
T d1pxza_         160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEE
Confidence            99999999999999999999999999999999999999999999988776667999999999998889999999999999


Q ss_pred             EEcceEeCCcceeecCCCCceEEeeCcEEeCCCCCCccceeeecccC-ccccCCceeeccCceEEeceeeecCCCCC-Cc
Q 014647          305 VVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETD-ESEWAGWNWRTEGDVMVNGAFFVPSGAGL-ST  382 (421)
Q Consensus       305 v~NN~y~~~~~yaigg~~~~~i~~egN~F~~~~~~~~k~vt~r~~~~-~~~~~~~~~~s~Gd~~~nG~~f~~sg~~~-~~  382 (421)
                      ++||||++|..|+++++.++++++|||||++++.+..|+++++.... ...|++|.|+++||+++||++|.++|... ..
T Consensus       240 v~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~nga~~~~sg~~~~~~  319 (346)
T d1pxza_         240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EECcEeecCccEEEeccCceEEEEEeeEEECCCCccceeeecccccCCccccccceeeccCceeeccceeccCCCccccc
Confidence            99999999999999999999999999999999999999999887543 34688999999999999999999988653 45


Q ss_pred             cCCCCCceecCChhhHHHHhhccCCcc
Q 014647          383 QYAKASSVEPKSAALIDQLTMNAGVFG  409 (421)
Q Consensus       383 ~~~~~~~~~~~~~~~v~~~t~~AG~~~  409 (421)
                      .|.+++++++.|++.|.+|+++||||.
T Consensus       320 ~~~~~~~y~~~~as~V~~v~~~AGal~  346 (346)
T d1pxza_         320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             cccCccccccCCHHHHHhhhccCCCCC
Confidence            688999999999999999999999984
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure