Citrus Sinensis ID: 014654
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 421 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FRL3 | 487 | Sugar transporter ERD6-li | yes | no | 0.976 | 0.843 | 0.784 | 0.0 | |
| Q93YP9 | 488 | Sugar transporter ERD6-li | no | no | 0.976 | 0.842 | 0.785 | 0.0 | |
| P93051 | 463 | Sugar transporter ERD6-li | no | no | 0.900 | 0.818 | 0.421 | 3e-84 | |
| Q8LBI9 | 482 | Sugar transporter ERD6-li | no | no | 0.921 | 0.804 | 0.411 | 9e-84 | |
| Q3ECP7 | 470 | Sugar transporter ERD6-li | no | no | 0.824 | 0.738 | 0.460 | 1e-83 | |
| Q0WQ63 | 470 | Sugar transporter ERD6-li | no | no | 0.926 | 0.829 | 0.397 | 8e-78 | |
| O04036 | 496 | Sugar transporter ERD6 OS | no | no | 0.959 | 0.814 | 0.380 | 4e-77 | |
| Q94CI7 | 474 | Sugar transporter ERD6-li | no | no | 0.866 | 0.770 | 0.401 | 8e-74 | |
| Q94KE0 | 470 | Sugar transporter ERD6-li | no | no | 0.855 | 0.765 | 0.416 | 1e-72 | |
| Q8VZT3 | 462 | Sugar transporter ERD6-li | no | no | 0.855 | 0.779 | 0.421 | 1e-72 |
| >sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/413 (78%), Positives = 375/413 (90%), Gaps = 2/413 (0%)
Query: 1 MSFRDDNEEAAN-LRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MSFRDDNEEA N LR+PF+HTGSWY+MGSRQSS+M SS Q++RD S+SV+ CVL+VALGP
Sbjct: 1 MSFRDDNEEARNDLRRPFIHTGSWYRMGSRQSSMMGSS-QVIRDSSISVLACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQNMRG LGSVN
Sbjct: 120 IAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLFFIPESPRWLAKMGMT++FE+S
Sbjct: 180 QLSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTDEFETS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGF+TDI++EVNEIKRSVASS++R +RF +LKR+RY+FPLM+GIGLLVLQQL GI
Sbjct: 240 LQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFPLMVGIGLLVLQQLGGI 299
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359
NGVLFYSS IF +AG++SSN ATFG+G +QVVAT ++TWL+DKAGRRLLL ISS GM S
Sbjct: 300 NGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKAGRRLLLTISSVGMTIS 359
Query: 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
+V+ AF+L+ FVS DS YS L ILS+VG+V +V+ FSLG+G IPW+IMSE
Sbjct: 360 LVIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFFSLGMGPIPWLIMSE 412
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93YP9|ERDL4_ARATH Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/414 (78%), Positives = 379/414 (91%), Gaps = 3/414 (0%)
Query: 1 MSFRDDNEEAA--NLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALG 58
MSFRDDN E +LR+PFLHTGSWY+MGSRQSS++ SS Q++RD S+SV+ CVL+VALG
Sbjct: 1 MSFRDDNTEEGRNDLRRPFLHTGSWYRMGSRQSSMLESS-QVIRDSSISVLACVLIVALG 59
Query: 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSL 118
PIQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEY+GRKGSL
Sbjct: 60 PIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYVGRKGSL 119
Query: 119 MIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 178
MIAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQ MRG+LGSV
Sbjct: 120 MIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQTMRGALGSV 179
Query: 179 NQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFES 238
NQLSVTIGIMLAYLLGLFV WR+LAVLGVLPCTLLIPGLFFIPESPRWLAKMG+T+DFE+
Sbjct: 180 NQLSVTIGIMLAYLLGLFVPWRILAVLGVLPCTLLIPGLFFIPESPRWLAKMGLTDDFET 239
Query: 239 SLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298
SLQVLRGF+TDI++EVNEIKRSVASSS+R+A+RF +LKR+RY+FPLM+GIGLL LQQL G
Sbjct: 240 SLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYFPLMVGIGLLALQQLGG 299
Query: 299 INGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAA 358
INGVLFYSS IF +AG++SSNVATFG+GVVQVVATG+ TWL+DKAGRRLLL+ISS GM
Sbjct: 300 INGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVDKAGRRLLLMISSIGMTI 359
Query: 359 SFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
S +V+VAF+L+ FVS DS Y+IL ++S+VG+V +VIS SLG+G IPW+IMSE
Sbjct: 360 SLVIVAVAFYLKEFVSPDSNMYNILSMVSVVGVVAMVISCSLGMGPIPWLIMSE 413
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 312 bits (800), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 162/384 (42%), Positives = 246/384 (64%), Gaps = 5/384 (1%)
Query: 29 RQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFS 88
R+ + + A D V V G FG GYSSP QA I +DL LTI+EFS
Sbjct: 9 REPLVDKNMAGSKPDQPWMVYLSTFVAVCGSFAFGSCAGYSSPAQAAIRNDLSLTIAEFS 68
Query: 89 IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148
+FGSL GAM+GAI SG IA+ +GRKG++ +++ ++GWL I F+K L +GRL
Sbjct: 69 LFGSLLTFGAMIGAITSGPIADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLAT 128
Query: 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVL 208
G+G+G SY VP++IAEIAP+ RG+L ++NQ+ + G+ +++++G V WRVLA++G++
Sbjct: 129 GYGMGAFSYVVPIFIAEIAPKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGII 188
Query: 209 PCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRT 268
PC GLFFIPESPRWLAK+G +FE++L+ LRG DIS E EI+ + + R
Sbjct: 189 PCAASFLGLFFIPESPRWLAKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLP 248
Query: 269 AIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVV 328
+ +L ++RY ++I GL+V QQ GING+ FY+S+IF AG + + V+
Sbjct: 249 KAKMLDLFQRRYIRSVLIAFGLMVFQQFGGINGICFYTSSIFEQAGF-PTRLGMIIYAVL 307
Query: 329 QVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSL 388
QVV T +N ++D+AGR+ LLL+S++G+ + +V+F+L+ + + +L++
Sbjct: 308 QVVITALNAPIVDRAGRKPLLLVSATGLVIGCLIAAVSFYLK----VHDMAHEAVPVLAV 363
Query: 389 VGLVTVVISFSLGVGAIPWVIMSE 412
VG++ + SFS G+GA+PWV+MSE
Sbjct: 364 VGIMVYIGSFSAGMGAMPWVVMSE 387
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 311 bits (796), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 167/406 (41%), Positives = 252/406 (62%), Gaps = 18/406 (4%)
Query: 8 EEAANLRKPFL-HTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFGFTC 66
+ +L KPFL H + + +S +M V+F V G +FG
Sbjct: 16 NKVEDLGKPFLTHEDDEKESENNESYLM-------------VLFSTFVAVCGSFEFGSCV 62
Query: 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126
GYS+PTQ+ I DL L+++EFS+FGS+ +GAM+GA+ SG+I+++ GRKG++ +A I
Sbjct: 63 GYSAPTQSSIRQDLNLSLAEFSMFGSILTIGAMLGAVMSGKISDFSGRKGAMRTSACFCI 122
Query: 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG 186
GWL + F+K + L +GR G+G+GV SY VPVYIAEI+P+N+RG L ++NQL + IG
Sbjct: 123 TGWLAVFFTKGALLLDVGRFFTGYGIGVFSYVVPVYIAEISPKNLRGGLTTLNQLMIVIG 182
Query: 187 IMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGF 246
+++L+G ++W+ LA+ G+ PC +L+ GL FIPESPRWLAK G ++F +LQ LRG
Sbjct: 183 SSVSFLIGSLISWKTLALTGLAPCIVLLFGLCFIPESPRWLAKAGHEKEFRVALQKLRGK 242
Query: 247 DTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYS 306
D DI+ E + I+ S+ + R +L K+Y ++IG+ L+V QQ GING+ FY+
Sbjct: 243 DADITNEADGIQVSIQALEILPKARIQDLVSKKYGRSVIIGVSLMVFQQFVGINGIGFYA 302
Query: 307 SNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366
S F AG +S + T + VQV T + T L+DK+GRR L++IS+ G+ L +
Sbjct: 303 SETFVKAGFTSGKLGTIAIACVQVPITVLGTILIDKSGRRPLIMISAGGIFLGCILTGTS 362
Query: 367 FFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
F L+G S + L++ G++ V +FS+G+G +PWVIMSE
Sbjct: 363 FLLKG----QSLLLEWVPSLAVGGVLIYVAAFSIGMGPVPWVIMSE 404
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 310 bits (794), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 165/358 (46%), Positives = 242/358 (67%), Gaps = 11/358 (3%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG GYSSP Q+++ +L L+++E+S+FGS+ +GAM+GA SG+IA+ IGR+ +
Sbjct: 42 GSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGAAMSGRIADMIGRRAT 101
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ + + I+GWL I SK + +L +GR L G+G+GV S+ VPVYIAEI P+ +RG +
Sbjct: 102 MGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKGLRGGFTT 161
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
V+QL + +G+ + YLLG F+ WR+LA++G++PC + + GLF IPESPRWLAK+G E+FE
Sbjct: 162 VHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWLAKVGKWEEFE 221
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG DIS E NEIK + + +L + +Y L++G+GL+VLQQ
Sbjct: 222 IALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVGVGLMVLQQFG 281
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMA 357
G+NG+ FY+S+IF +AG+ SS + + VVQ+ T + LMDK+GRR LLLIS++G
Sbjct: 282 GVNGIAFYASSIFESAGV-SSKIGMIAMVVVQIPMTTLGVLLMDKSGRRPLLLISATGTC 340
Query: 358 ASFFLVSVAFFLEGFVSE---DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
FLV ++F L+ FV + D+ + ++ G+L G SFSLG+G IPWVIMSE
Sbjct: 341 IGCFLVGLSFSLQ-FVKQLSGDASYLALTGVLVYTG------SFSLGMGGIPWVIMSE 391
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WQ63|ERDL8_ARATH Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (744), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 163/410 (39%), Positives = 250/410 (60%), Gaps = 20/410 (4%)
Query: 4 RDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFG 63
+DD E+ + +P L + + + + + S V ++ G +FG
Sbjct: 5 KDDMEKRNDKSEPLL--------------LPENGSDVSEEASWMVYLSTIIAVCGSYEFG 50
Query: 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123
GYS+PTQ I+ +L L+ S+FS+FGS+ N+GA++GAI SG+I+++IGRKG++ +++V
Sbjct: 51 TCVGYSAPTQFGIMEELNLSYSQFSVFGSILNMGAVLGAITSGKISDFIGRKGAMRLSSV 110
Query: 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSV 183
+ IGWLII +K L GR L G+G G +S+ VPV+IAEI+P+ +RG+L ++NQL +
Sbjct: 111 ISAIGWLIIYLAKGDVPLDFGRFLTGYGCGTLSFVVPVFIAEISPRKLRGALATLNQLFI 170
Query: 184 TIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVL 243
IG+ +L+G VNWR LA+ GV PC +L G +FIPESPRWL +G DFE +LQ L
Sbjct: 171 VIGLASMFLIGAVVNWRTLALTGVAPCVVLFFGTWFIPESPRWLEMVGRHSDFEIALQKL 230
Query: 244 RGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVL 303
RG +I+ E EI+ +AS + +L K+ +++G+GL+ QQ GINGV+
Sbjct: 231 RGPQANITREAGEIQEYLASLAHLPKATLMDLIDKKNIRFVIVGVGLMFFQQFVGINGVI 290
Query: 304 FYSSNIFANAGISSSNVATFGLGVVQVVATGVN-TWLMDKAGRRLLLLISSSGMAASFFL 362
FY+ IF +AG +S + + + QVV T + T L+D+ GRR LL+ S+ GM L
Sbjct: 291 FYAQQIFVSAG-ASPTLGSILYSIEQVVLTALGATLLIDRLGRRPLLMASAVGMLIGCLL 349
Query: 363 VSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
+ +F L+ I+ L++ G++ + SFS+G+GAIPWVIMSE
Sbjct: 350 IGNSFLLKA----HGLALDIIPALAVSGVLVYIGSFSIGMGAIPWVIMSE 395
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04036|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 288 bits (738), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 160/420 (38%), Positives = 250/420 (59%), Gaps = 16/420 (3%)
Query: 4 RDDNEEAANLRK-------PFLHTGSWYKMGSRQSSIMSSSAQMLRDG----SVSVVFCV 52
R + E LRK F + ++ + G + S DG + SV
Sbjct: 3 RQKSMEKGLLRKSLSIRERKFPNEDAFLESGLSRKSPREVKKPQNDDGECRVTASVFLST 62
Query: 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI 112
V G G G+SS QA I DL L+++E+S+FGS+ +G ++GA+ SG++A+ +
Sbjct: 63 FVAVSGSFCTGCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGKVADVL 122
Query: 113 GRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR 172
GRK +++ I GWL ++ ++++ +L GRLL G GVG+ SY +PVYIAEIAP+++R
Sbjct: 123 GRKRTMLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVR 182
Query: 173 GSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGM 232
GS NQL GI L +++G F+ WR+L V+G++PC + LFFIPESPRWLAK+G
Sbjct: 183 GSFVFANQLMQNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWLAKLGR 242
Query: 233 TEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLV 292
++ SSLQ LRG D DIS E N I+ ++ + + +EL ++RY +PL+IG+GL+
Sbjct: 243 DKECRSSLQRLRGSDVDISREANTIRDTIDMTENGGETKMSELFQRRYAYPLIIGVGLMF 302
Query: 293 LQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLIS 352
LQQL G +GV +Y+S++F G S+ + T + + V + T L+DK GRR LL+ S
Sbjct: 303 LQQLCGSSGVTYYASSLFNKGGFPSA-IGTSVIATIMVPKAMLATVLVDKMGRRTLLMAS 361
Query: 353 SSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
S M S L+SV++ + F + I + +G++ ++SF++G+G +PW+IM+E
Sbjct: 362 CSAMGLSALLLSVSYGFQSF----GILPELTPIFTCIGVLGHIVSFAMGMGGLPWIIMAE 417
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94CI7|EDL17_ARATH Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 278 bits (710), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 150/374 (40%), Positives = 229/374 (61%), Gaps = 9/374 (2%)
Query: 43 DGSVSVVFCVL----VVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGA 98
D + CV+ V G FG GY+S + ++ DL L+I++FS FGS A +GA
Sbjct: 22 DSECRITACVILSTFVAVCGSFSFGVATGYTSGAETGVMKDLDLSIAQFSAFGSFATLGA 81
Query: 99 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 158
+GA+ G +A IGR+G++ ++ I GWL I+F+K+ L GR++ G G G+ SY
Sbjct: 82 AIGALFCGNLAMVIGRRGTMWVSDFLCITGWLSIAFAKEVVLLNFGRIISGIGFGLTSYV 141
Query: 159 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 218
VPVYIAEI P+++RG+ NQL G+ + Y G F+ WR LA+LG LPC + + GLF
Sbjct: 142 VPVYIAEITPKHVRGTFTFSNQLLQNAGLAMIYFCGNFITWRTLALLGALPCFIQVIGLF 201
Query: 219 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 278
F+PESPRWLAK+G ++ E+SL LRG D DIS E +EI+ + F++L ++
Sbjct: 202 FVPESPRWLAKVGSDKELENSLFRLRGRDADISREASEIQVMTKMVENDSKSSFSDLFQR 261
Query: 279 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 338
+Y + L++GIGL+++QQ SG V+ Y+S IF AG S + + T LG+ + +
Sbjct: 262 KYRYTLVVGIGLMLIQQFSGSAAVISYASTIFRKAGFSVA-IGTTMLGIFVIPKAMIGLI 320
Query: 339 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 398
L+DK GRR LL+ S+ GM+ + L+ VAF L+ + + ILS + ++ + ++
Sbjct: 321 LVDKWGRRPLLMTSAFGMSMTCMLLGVAFTLQ----KMQLLSELTPILSFICVMMYIATY 376
Query: 399 SLGVGAIPWVIMSE 412
++G+G +PWVIMSE
Sbjct: 377 AIGLGGLPWVIMSE 390
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (700), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 152/365 (41%), Positives = 232/365 (63%), Gaps = 5/365 (1%)
Query: 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQ 107
V+F V G FG GYSS Q II+DL L+++++S+FGS+ G M+GAI SG+
Sbjct: 32 VLFSTFVSVCGSFCFGCAAGYSSVAQTGIINDLGLSVAQYSMFGSIMTFGGMIGAIFSGK 91
Query: 108 IAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 167
+A+ +GRKG++ A + I GW+ ++ +KDS +L +GRL GF VG++SY +PVYIAEI
Sbjct: 92 VADLMGRKGTMWFAQIFCIFGWVAVALAKDSMWLDIGRLSTGFAVGLLSYVIPVYIAEIT 151
Query: 168 PQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 227
P+++RG+ NQL + G+ L Y++G FV+WR LA++G++PC L + LFFIPESPR L
Sbjct: 152 PKHVRGAFVFANQLMQSCGLSLFYVIGNFVHWRNLALIGLIPCALQVVTLFFIPESPRLL 211
Query: 228 AKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287
K G ++ +SLQ LRG D DIS E N IK ++ R +L ++RY ++IG
Sbjct: 212 GKWGHEKECRASLQSLRGDDADISEEANTIKETMILFDEGPKSRVMDLFQRRYAPSVVIG 271
Query: 288 IGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRL 347
+GL++LQQLSG +G+++Y ++F G SS + + L V+ + + L++K GRR
Sbjct: 272 VGLMLLQQLSGSSGLMYYVGSVFDKGGFPSS-IGSMILAVIMIPKALLGLILVEKMGRRP 330
Query: 348 LLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPW 407
LLL S+ GM L+S +F + D + I + +G+V + SF++G+G +PW
Sbjct: 331 LLLASTGGMCFFSLLLSFSFCFRSYGMLD----ELTPIFTCIGVVGFISSFAVGMGGLPW 386
Query: 408 VIMSE 412
+IMSE
Sbjct: 387 IIMSE 391
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZT3|EDL12_ARATH Sugar transporter ERD6-like 12 OS=Arabidopsis thaliana GN=SUGTL5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (699), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/365 (42%), Positives = 222/365 (60%), Gaps = 5/365 (1%)
Query: 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQ 107
++F ++ FG GY++ T + I+SDL L++++FS+FGSL+ G M+GAI S +
Sbjct: 26 LIFSTFIIVSASFTFGAAIGYTADTMSSIMSDLDLSLAQFSLFGSLSTFGGMIGAIFSAK 85
Query: 108 IAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 167
A G K +L +A + I GWL IS +KD +L MGR L G GVG+ISY VPVYIAEI
Sbjct: 86 AASAFGHKMTLWVADLFCITGWLAISLAKDIIWLDMGRFLVGIGVGLISYVVPVYIAEIT 145
Query: 168 PQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 227
P+++RG+ NQL G+ + Y G F++WR LA++G +PC + + GLFFIPESPRWL
Sbjct: 146 PKHVRGAFTFSNQLLQNCGVAVVYYFGNFLSWRTLAIIGSIPCWIQVIGLFFIPESPRWL 205
Query: 228 AKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287
AK G ++ E LQ LRG DI E EIK SV +S + + I L KRY L IG
Sbjct: 206 AKKGRDKECEEVLQKLRGRKYDIVPEACEIKISVEASKKNSNINIRSLFEKRYAHQLTIG 265
Query: 288 IGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRL 347
IGL++LQQL G G+ Y S +F AG + + L ++ V + + L+D+ GRR
Sbjct: 266 IGLMLLQQLCGTAGISSYGSTLFKLAGF-PARIGMMVLSLIVVPKSLMGLILVDRWGRRP 324
Query: 348 LLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPW 407
LL+ S+ G+ S ++VAF V + I I +G+++ + F++G+GA+PW
Sbjct: 325 LLMTSALGLCLSCITLAVAF----GVKDVPGIGKITPIFCFIGILSFTMMFAIGMGALPW 380
Query: 408 VIMSE 412
+IMSE
Sbjct: 381 IIMSE 385
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 421 | ||||||
| 147792214 | 486 | hypothetical protein VITISV_009034 [Viti | 0.976 | 0.845 | 0.834 | 0.0 | |
| 225430744 | 486 | PREDICTED: sugar transporter ERD6-like 6 | 0.976 | 0.845 | 0.834 | 0.0 | |
| 356559394 | 484 | PREDICTED: sugar transporter ERD6-like 6 | 0.969 | 0.842 | 0.806 | 0.0 | |
| 224065573 | 487 | predicted protein [Populus trichocarpa] | 0.976 | 0.843 | 0.811 | 0.0 | |
| 255538660 | 487 | sugar transporter, putative [Ricinus com | 0.976 | 0.843 | 0.799 | 0.0 | |
| 357518263 | 486 | Sugar transporter ERD6-like protein [Med | 0.976 | 0.845 | 0.786 | 0.0 | |
| 356503024 | 487 | PREDICTED: sugar transporter ERD6-like 6 | 0.978 | 0.845 | 0.800 | 0.0 | |
| 224097006 | 488 | predicted protein [Populus trichocarpa] | 0.978 | 0.844 | 0.808 | 0.0 | |
| 449460263 | 486 | PREDICTED: sugar transporter ERD6-like 6 | 0.976 | 0.845 | 0.786 | 0.0 | |
| 255561092 | 486 | sugar transporter, putative [Ricinus com | 0.966 | 0.837 | 0.804 | 0.0 |
| >gi|147792214|emb|CAN72983.1| hypothetical protein VITISV_009034 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/412 (83%), Positives = 389/412 (94%), Gaps = 1/412 (0%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR++ E+ +LRKPFLHTGSWY+MGSRQSSIM SSAQ++RD SVSV+ CVL+VALGPI
Sbjct: 1 MSFREE-EDGRDLRKPFLHTGSWYRMGSRQSSIMGSSAQIIRDNSVSVLLCVLIVALGPI 59
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ+EIISDL L++SEFSIFGSL+NVGAMVGAIASGQIAEYIGRKGSLMI
Sbjct: 60 QFGFTCGYSSPTQSEIISDLGLSLSEFSIFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 119
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
A++PNIIGWL ISF++DSSFL+MGRLLEGFGVGVISYTVPVYIAEI+PQNMRG LGSVNQ
Sbjct: 120 ASIPNIIGWLAISFAQDSSFLYMGRLLEGFGVGVISYTVPVYIAEISPQNMRGGLGSVNQ 179
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LSVT+GI+LAY+LGLFVNWRVLAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTEDFE+SL
Sbjct: 180 LSVTLGILLAYVLGLFVNWRVLAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFEASL 239
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV EIKRSVAS+ +RT I+F++LKRKRYWFPLM+GIGLL+LQQLSGIN
Sbjct: 240 QVLRGFDTDISVEVTEIKRSVASTGKRTTIQFSDLKRKRYWFPLMVGIGLLMLQQLSGIN 299
Query: 301 GVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360
GVLFYSSNIF AGISSS++AT GLGV+QV+ATGV TWL+DKAGRRLLL++SSSGM S
Sbjct: 300 GVLFYSSNIFEAAGISSSDIATVGLGVIQVIATGVTTWLVDKAGRRLLLIVSSSGMTLSL 359
Query: 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
LVSVAF+L+ +SEDSRFYSILGILSLVGLV +VI+FSLGVGAIPWVIMSE
Sbjct: 360 LLVSVAFYLKDVISEDSRFYSILGILSLVGLVALVITFSLGVGAIPWVIMSE 411
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430744|ref|XP_002266704.1| PREDICTED: sugar transporter ERD6-like 6 [Vitis vinifera] gi|297735148|emb|CBI17510.3| unnamed protein product [Vitis vinifera] gi|310877886|gb|ADP37174.1| putative ERD6-like transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/412 (83%), Positives = 389/412 (94%), Gaps = 1/412 (0%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR++ E+ +LRKPFLHTGSWY+MGSRQSSIM SSAQ++RD SVSV+ CVL+VALGPI
Sbjct: 1 MSFREE-EDGRDLRKPFLHTGSWYRMGSRQSSIMGSSAQIIRDNSVSVLLCVLIVALGPI 59
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ+EIISDL L++SEFSIFGSL+NVGAMVGAIASGQIAEYIGRKGSLMI
Sbjct: 60 QFGFTCGYSSPTQSEIISDLGLSLSEFSIFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 119
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
A++PNIIGWL ISF++DSSFL+MGRLLEGFGVGVISYTVPVYIAEI+PQNMRG LGSVNQ
Sbjct: 120 ASIPNIIGWLAISFAQDSSFLYMGRLLEGFGVGVISYTVPVYIAEISPQNMRGGLGSVNQ 179
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LSVT+GI+LAY+LGLFVNWRVLAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTEDFE+SL
Sbjct: 180 LSVTLGILLAYVLGLFVNWRVLAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFEASL 239
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV EIKRSVAS+ +RT I+F++LKRKRYWFPLM+GIGLL+LQQLSGIN
Sbjct: 240 QVLRGFDTDISVEVTEIKRSVASTGKRTTIQFSDLKRKRYWFPLMVGIGLLMLQQLSGIN 299
Query: 301 GVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360
GVLFYSSNIF AGISSS++AT GLGV+QV+ATGV TWL+DKAGRRLLL++SSSGM S
Sbjct: 300 GVLFYSSNIFEAAGISSSDIATVGLGVIQVIATGVTTWLVDKAGRRLLLIVSSSGMTLSL 359
Query: 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
LVSVAF+L+ +SEDSRFYSILGILSLVGLV +VI+FSLGVGAIPWVIMSE
Sbjct: 360 LLVSVAFYLKDVISEDSRFYSILGILSLVGLVALVITFSLGVGAIPWVIMSE 411
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559394|ref|XP_003547984.1| PREDICTED: sugar transporter ERD6-like 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/408 (80%), Positives = 377/408 (92%)
Query: 5 DDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFGF 64
+++ +A +L+KPFLHTGSWYKMGSRQSSIM SS Q++RDG+VSV+FCVL+VALGPIQFGF
Sbjct: 2 EESGDARDLQKPFLHTGSWYKMGSRQSSIMGSSTQVIRDGAVSVLFCVLIVALGPIQFGF 61
Query: 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124
TCGYSSPTQ I+ DL L+ISEFS FGSL+NVGAMVGAIASGQIAEYIGRKGSLMIAA+P
Sbjct: 62 TCGYSSPTQGAIVRDLNLSISEFSFFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIAAIP 121
Query: 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVT 184
NIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISY VPVYIAEIAPQN+RG LGSVNQLSVT
Sbjct: 122 NIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYVVPVYIAEIAPQNLRGGLGSVNQLSVT 181
Query: 185 IGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLR 244
IGIMLAYLLGLFVNWRVLA+LG+LPCT+LIPGLFFIPESPRWLAKMGM ++FE+SLQVLR
Sbjct: 182 IGIMLAYLLGLFVNWRVLAILGILPCTVLIPGLFFIPESPRWLAKMGMIDEFETSLQVLR 241
Query: 245 GFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLF 304
GFDTDIS+EV+EIKRSVAS+ +R AIRFA+LKRKRYWFPLM+GIGLLVLQQLSGING+LF
Sbjct: 242 GFDTDISVEVHEIKRSVASTGKRAAIRFADLKRKRYWFPLMVGIGLLVLQQLSGINGILF 301
Query: 305 YSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364
YS+ IFANAGISSS AT GLG VQV+ATG++TWL+DK+GRRLLL+ISSS M S +VS
Sbjct: 302 YSTTIFANAGISSSEAATVGLGAVQVIATGISTWLVDKSGRRLLLIISSSVMTVSLLIVS 361
Query: 365 VAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
+AF+LEG VSEDS +SILGI+S+VGLV +VI FSLG+G IPW+IMSE
Sbjct: 362 IAFYLEGVVSEDSHLFSILGIVSIVGLVAMVIGFSLGLGPIPWLIMSE 409
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065573|ref|XP_002301864.1| predicted protein [Populus trichocarpa] gi|222843590|gb|EEE81137.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/413 (81%), Positives = 383/413 (92%), Gaps = 2/413 (0%)
Query: 1 MSFRDDNEEA-ANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MSFRDD+E+ ++RKPFLHTGSWY+M SRQSS+M SS Q +RD S+SVV CVL+VALGP
Sbjct: 1 MSFRDDSEDGRGDIRKPFLHTGSWYRMSSRQSSMMGSS-QAIRDNSISVVACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFT GYSSPTQA I++DL LT+SEFS+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTSGYSSPTQASIMADLGLTVSEFSLFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQN+RG+LGSVN
Sbjct: 120 IAAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTEDFESS
Sbjct: 180 QLSVTIGIMLAYLLGLFVEWRILAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFESS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGFDTDIS+EV+EIKR++AS+SRRT IRFAELKRKRYWFPL +GIGLLVLQQLSGI
Sbjct: 240 LQVLRGFDTDISVEVHEIKRAIASTSRRTTIRFAELKRKRYWFPLTVGIGLLVLQQLSGI 299
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359
NGVLFYSSNIFA AGI SSNVAT G+G +QV+ATGV TWL+D+ GRRLLL++S+SGM S
Sbjct: 300 NGVLFYSSNIFATAGIKSSNVATVGVGAIQVIATGVTTWLVDRTGRRLLLIVSTSGMTIS 359
Query: 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
+V+V+FF++GFV EDS YSILGILS+VG+V +V++FSLG+GAIPWVIMSE
Sbjct: 360 LLIVAVSFFVKGFVPEDSSLYSILGILSVVGVVAMVVTFSLGMGAIPWVIMSE 412
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538660|ref|XP_002510395.1| sugar transporter, putative [Ricinus communis] gi|223551096|gb|EEF52582.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/413 (79%), Positives = 379/413 (91%), Gaps = 2/413 (0%)
Query: 1 MSFRDDNEEA-ANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MSFRDD+E+A +LRKPFLHTGSWY+MGSRQSS+M SS Q++RD S+SVV CVL+VALGP
Sbjct: 1 MSFRDDSEDARGDLRKPFLHTGSWYRMGSRQSSMMGSS-QVIRDSSISVVACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQ I DLKL++SE+S+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTCGYSSPTQTAITDDLKLSVSEYSLFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNI+GWL ISF+ D+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQN+RG+LGSVN
Sbjct: 120 IAAIPNILGWLAISFAHDASFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLFFIPESPRWLAKMGMTEDFE+S
Sbjct: 180 QLSVTIGIMLAYLLGLFVQWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTEDFEAS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGFDTDIS+EVNEIKRSVAS+SRR+ IRF ELKR+RYW PLMIGIGLLVLQQLSGI
Sbjct: 240 LQVLRGFDTDISLEVNEIKRSVASTSRRSTIRFVELKRRRYWLPLMIGIGLLVLQQLSGI 299
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359
NGVLFYSS IF +AG+ +SNVAT GLG +QV+ATGV T ++DKAGRRLLL+ISSS MA S
Sbjct: 300 NGVLFYSSTIFESAGVKNSNVATCGLGAIQVIATGVTTSIVDKAGRRLLLIISSSAMAIS 359
Query: 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
LV+V+FF++ FVS+ S YSILGILS+VG++ +V+ FSLG+G IPW+IMSE
Sbjct: 360 LLLVAVSFFVQDFVSDQSHLYSILGILSIVGVLGMVVGFSLGMGPIPWIIMSE 412
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357518263|ref|XP_003629420.1| Sugar transporter ERD6-like protein [Medicago truncatula] gi|355523442|gb|AET03896.1| Sugar transporter ERD6-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/412 (78%), Positives = 381/412 (92%), Gaps = 1/412 (0%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR+++ + +L+KPFLHTGSWYKMGSRQSS+M S+ ++RD SVSV+FCVL+ ALGPI
Sbjct: 1 MSFREESGDGRDLQKPFLHTGSWYKMGSRQSSVMGSTTSVMRD-SVSVLFCVLIAALGPI 59
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ II+DLKL++SEFS+FGSL+NVGAMVGAIASGQIAEY+GRKGSLMI
Sbjct: 60 QFGFTCGYSSPTQQAIINDLKLSVSEFSLFGSLSNVGAMVGAIASGQIAEYVGRKGSLMI 119
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
A++PNIIGWL ISF+KDSSFLFMGRLLEGFGVG+ISY VPVYIAEIAP+NMRGSLGSVNQ
Sbjct: 120 ASIPNIIGWLAISFAKDSSFLFMGRLLEGFGVGIISYVVPVYIAEIAPENMRGSLGSVNQ 179
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LSVTIGIMLAYLLGLF NWRVLA+LG+LPCT+LIPGLFFIPESPRWLAKMGM E+FE+SL
Sbjct: 180 LSVTIGIMLAYLLGLFANWRVLAILGILPCTVLIPGLFFIPESPRWLAKMGMMEEFETSL 239
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV+EIK++VAS+ +R IRFA+L+RKRYWFPL +GIGLLVLQQLSGIN
Sbjct: 240 QVLRGFDTDISVEVHEIKKAVASNGKRATIRFADLQRKRYWFPLSVGIGLLVLQQLSGIN 299
Query: 301 GVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360
GVLFYS++IFANAGISSSN AT GLG +QV+ATGV TWL+DK+GRR+LL+ISSS M AS
Sbjct: 300 GVLFYSTSIFANAGISSSNAATVGLGAIQVIATGVATWLVDKSGRRVLLIISSSLMTASL 359
Query: 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
+VS+AF+LEG V +DS+++SILGI+S+VGLV +VI FSLG+G IPW+IMSE
Sbjct: 360 LVVSIAFYLEGVVEKDSQYFSILGIISVVGLVVMVIGFSLGLGPIPWLIMSE 411
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503024|ref|XP_003520312.1| PREDICTED: sugar transporter ERD6-like 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/412 (80%), Positives = 379/412 (91%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR+++ +A +L+KPFLHTGSWYKMGSRQSSIM SS ++RDG+VSV+FCVL+VALGPI
Sbjct: 1 MSFREESGDARDLQKPFLHTGSWYKMGSRQSSIMGSSTHVIRDGAVSVLFCVLIVALGPI 60
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ I+ DL L+ISEFS FGSL+NVGAMVGAIASGQIAEYIGRKGSLMI
Sbjct: 61 QFGFTCGYSSPTQGAIVRDLNLSISEFSFFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 120
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
AA+PNIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISY VPVYIAEIAPQ++RG LGSVNQ
Sbjct: 121 AAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYVVPVYIAEIAPQHLRGGLGSVNQ 180
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LS+TIGIMLAYLLGLFVNWRVLA+LG+LPCT+LIPGLFFIPESPRWLAKMGMT++FE+SL
Sbjct: 181 LSITIGIMLAYLLGLFVNWRVLAILGILPCTVLIPGLFFIPESPRWLAKMGMTDEFETSL 240
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV EIKRSVAS+ +R IRFA+LKRKRYWFPLM+GIGLLVLQQLSGIN
Sbjct: 241 QVLRGFDTDISVEVYEIKRSVASTGKRATIRFADLKRKRYWFPLMVGIGLLVLQQLSGIN 300
Query: 301 GVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360
GVLFYS+ IFANAGISSS AT GLG VQV+ATG++TWL+DK+GRRLLL+ISSS M S
Sbjct: 301 GVLFYSTTIFANAGISSSEAATVGLGAVQVIATGISTWLVDKSGRRLLLMISSSVMTVSL 360
Query: 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
+VS+AF+LEG VSEDS +S+LGI+S+VGLV +VI FSLG+G IPW+IMSE
Sbjct: 361 LIVSIAFYLEGVVSEDSHLFSMLGIVSVVGLVVMVIGFSLGLGPIPWLIMSE 412
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097006|ref|XP_002310808.1| predicted protein [Populus trichocarpa] gi|222853711|gb|EEE91258.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/413 (80%), Positives = 380/413 (92%), Gaps = 1/413 (0%)
Query: 1 MSFRDDNEEAAN-LRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MS RDD EEA + LRKP L TGSWY+M SRQSSIMSSSAQMLRDGSVSVV CVL+VALGP
Sbjct: 1 MSQRDDAEEARDQLRKPLLQTGSWYRMSSRQSSIMSSSAQMLRDGSVSVVLCVLIVALGP 60
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQAEIISDLKL+ISEFS+FGSL+NVGAM+GA+ SGQ+AEYIGRKGSL+
Sbjct: 61 IQFGFTCGYSSPTQAEIISDLKLSISEFSMFGSLSNVGAMIGALVSGQLAEYIGRKGSLV 120
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
+AAVPNIIGWL ISF+ DSSFLFMGRLLEGFGVG+ISYTVPVYIAEIAPQ+MRGSLGSVN
Sbjct: 121 VAAVPNIIGWLSISFAVDSSFLFMGRLLEGFGVGIISYTVPVYIAEIAPQDMRGSLGSVN 180
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGI+L+YLLGLFVNWRVLAVLG PC LLI GLFFIPESPRWLAKMGMTEDFE+S
Sbjct: 181 QLSVTIGILLSYLLGLFVNWRVLAVLGCFPCALLILGLFFIPESPRWLAKMGMTEDFEAS 240
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRG+DTDI+ EVNEIKR+VASSS+RT IRFA+LKR+RYWFPLM+GIGLLVLQQ SGI
Sbjct: 241 LQVLRGYDTDITAEVNEIKRAVASSSKRTTIRFADLKRRRYWFPLMVGIGLLVLQQFSGI 300
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359
NG+ FYSSNIFANAGISSSN+AT GLG +QV+ATG+++WLMDKAGRRLLL+IS++G+ S
Sbjct: 301 NGIFFYSSNIFANAGISSSNLATCGLGAIQVIATGISSWLMDKAGRRLLLIISTTGVTLS 360
Query: 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
LV++AF+L+G + +DS Y I+GI+SL GLV VVI FS+G+GAIPW+IMSE
Sbjct: 361 LLLVAIAFYLQGILPQDSDLYHIMGIVSLGGLVAVVIFFSVGLGAIPWIIMSE 413
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460263|ref|XP_004147865.1| PREDICTED: sugar transporter ERD6-like 6-like [Cucumis sativus] gi|449476810|ref|XP_004154840.1| PREDICTED: sugar transporter ERD6-like 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/412 (78%), Positives = 374/412 (90%), Gaps = 1/412 (0%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFRDDNEE +LRKPFLHTGSWY+MGSRQSS+M SS Q +RD S+SV+ CVL+VALGPI
Sbjct: 1 MSFRDDNEEGRDLRKPFLHTGSWYRMGSRQSSMMGSS-QGIRDSSISVLACVLIVALGPI 59
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ+ I+ DL+LT+ E+S+FGSL+NVGAMVGAI+SGQIAEYIGRKGSLMI
Sbjct: 60 QFGFTCGYSSPTQSSIMKDLRLTVPEYSVFGSLSNVGAMVGAISSGQIAEYIGRKGSLMI 119
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
AA+PNIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQN+RG LGSVNQ
Sbjct: 120 AAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGGLGSVNQ 179
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LSVTIGI+LAYLLGLFV WR+LAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTE+FE+SL
Sbjct: 180 LSVTIGILLAYLLGLFVPWRLLAVLGILPCTVLIPGLFFIPESPRWLAKMGMTEEFETSL 239
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFD DISIEVNEIKRSVA++++RT IRFAELKR+RYWFPLMIGIGLL+LQQL+GIN
Sbjct: 240 QVLRGFDADISIEVNEIKRSVATTTKRTTIRFAELKRRRYWFPLMIGIGLLMLQQLTGIN 299
Query: 301 GVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360
VLFYSS IFA AG+ SSNVAT GLG VQVVAT V TWL+D+AGRR+LL++S++GM S
Sbjct: 300 AVLFYSSTIFAAAGVESSNVATCGLGAVQVVATAVTTWLVDRAGRRILLIVSTAGMTFSL 359
Query: 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
+VSV FFL+ S+ S Y+IL ILS+V +V +V+ FSLG+GAIPWVIMSE
Sbjct: 360 LIVSVVFFLKDLTSDTSSLYNILSILSVVSVVALVVFFSLGLGAIPWVIMSE 411
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255561092|ref|XP_002521558.1| sugar transporter, putative [Ricinus communis] gi|223539236|gb|EEF40829.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/409 (80%), Positives = 379/409 (92%), Gaps = 2/409 (0%)
Query: 6 DNEEAAN--LRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFG 63
EEA + +RKP LHTGSWY+M SRQSS+M SS+Q +RDG+VSVV CVL+VALGPIQFG
Sbjct: 3 SREEAGDDGVRKPLLHTGSWYRMSSRQSSMMGSSSQYIRDGAVSVVLCVLIVALGPIQFG 62
Query: 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123
FTCGYSSPTQAEII DL L+ISEFS+FGSL+NVGAMVGAIASGQ+AEYIGRKGSLM+AA+
Sbjct: 63 FTCGYSSPTQAEIIRDLNLSISEFSLFGSLSNVGAMVGAIASGQMAEYIGRKGSLMVAAI 122
Query: 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSV 183
PNIIGWL ISF+KDSSFLFMGRLLEGFGVG+ISYTVPVYIAEIAPQN RGSLGSVNQLSV
Sbjct: 123 PNIIGWLSISFAKDSSFLFMGRLLEGFGVGIISYTVPVYIAEIAPQNRRGSLGSVNQLSV 182
Query: 184 TIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVL 243
T+GIMLAYLLGLFV+WR+LAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTEDFE+SLQVL
Sbjct: 183 TLGIMLAYLLGLFVHWRLLAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFEASLQVL 242
Query: 244 RGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVL 303
RGFDTDIS EVNEIKRSVASS++R+ +RFA+L+R+RYWFPLM+GIGLL+LQQLSGING+L
Sbjct: 243 RGFDTDISAEVNEIKRSVASSTKRSTVRFADLRRRRYWFPLMVGIGLLMLQQLSGINGIL 302
Query: 304 FYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV 363
FYSSNIF +AG+SS N+AT GLGV+QV+ATGV TWL+DKAGRRLLL++S+SG+ S LV
Sbjct: 303 FYSSNIFESAGLSSGNLATVGLGVIQVLATGVTTWLVDKAGRRLLLIVSTSGITVSLLLV 362
Query: 364 SVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
+VAF+LEG VS+DS Y I+GILSLVGLV ++I FSLG+GAIPW+IMSE
Sbjct: 363 AVAFYLEGNVSKDSHLYGIMGILSLVGLVAMIIFFSLGLGAIPWIIMSE 411
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 421 | ||||||
| TAIR|locus:2025132 | 487 | ERDL6 "ERD6-like 6" [Arabidops | 0.976 | 0.843 | 0.723 | 5.3e-159 | |
| TAIR|locus:2016407 | 488 | AT1G19450 [Arabidopsis thalian | 0.976 | 0.842 | 0.729 | 1.1e-158 | |
| TAIR|locus:2066400 | 463 | AT2G48020 [Arabidopsis thalian | 0.831 | 0.755 | 0.422 | 1e-75 | |
| TAIR|locus:2199539 | 470 | AT1G54730 [Arabidopsis thalian | 0.831 | 0.744 | 0.439 | 1.7e-75 | |
| TAIR|locus:2144975 | 482 | AT5G18840 "AT5G18840" [Arabido | 0.833 | 0.728 | 0.422 | 1.9e-74 | |
| TAIR|locus:2096219 | 470 | AT3G05150 [Arabidopsis thalian | 0.831 | 0.744 | 0.421 | 6.1e-71 | |
| TAIR|locus:2036084 | 496 | ERD6 "EARLY RESPONSE TO DEHYDR | 0.819 | 0.695 | 0.394 | 8e-69 | |
| TAIR|locus:2146350 | 474 | SFP1 [Arabidopsis thaliana (ta | 0.828 | 0.736 | 0.396 | 1.3e-66 | |
| TAIR|locus:2079802 | 462 | AT3G05400 [Arabidopsis thalian | 0.821 | 0.748 | 0.415 | 5.8e-66 | |
| TAIR|locus:505006329 | 467 | AT3G05165 [Arabidopsis thalian | 0.819 | 0.738 | 0.397 | 4.1e-65 |
| TAIR|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1549 (550.3 bits), Expect = 5.3e-159, P = 5.3e-159
Identities = 299/413 (72%), Positives = 344/413 (83%)
Query: 1 MSFRDDNEEAAN-LRKPFLHTGSWYKMGXXXXXXXXXXAQMLRDGSXXXXXXXXXXALGP 59
MSFRDDNEEA N LR+PF+HTGSWY+MG +Q++RD S ALGP
Sbjct: 1 MSFRDDNEEARNDLRRPFIHTGSWYRMGSRQSSMMGS-SQVIRDSSISVLACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQNMRG LGSVN
Sbjct: 120 IAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLFFIPESPRWLAKMGMT++FE+S
Sbjct: 180 QLSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTDEFETS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGF+TDI++EVNEIKRSVASS++R +RF +LKR+RY+FPLM+GIGLLVLQQL GI
Sbjct: 240 LQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFPLMVGIGLLVLQQLGGI 299
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMXXX 359
NGVLFYSS IF +AG++SSN ATFG+G +QVVAT ++TWL+DKAGRR GM
Sbjct: 300 NGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKAGRRLLLTISSVGMTIS 359
Query: 360 XXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
+ FVS DS YS L ILS+VG+V +V+ FSLG+G IPW+IMSE
Sbjct: 360 LVIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFFSLGMGPIPWLIMSE 412
|
|
| TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1546 (549.3 bits), Expect = 1.1e-158, P = 1.1e-158
Identities = 302/414 (72%), Positives = 347/414 (83%)
Query: 1 MSFRDDN-EEAAN-LRKPFLHTGSWYKMGXXXXXXXXXXAQMLRDGSXXXXXXXXXXALG 58
MSFRDDN EE N LR+PFLHTGSWY+MG +Q++RD S ALG
Sbjct: 1 MSFRDDNTEEGRNDLRRPFLHTGSWYRMGSRQSSMLES-SQVIRDSSISVLACVLIVALG 59
Query: 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSL 118
PIQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEY+GRKGSL
Sbjct: 60 PIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYVGRKGSL 119
Query: 119 MIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 178
MIAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQ MRG+LGSV
Sbjct: 120 MIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQTMRGALGSV 179
Query: 179 NQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFES 238
NQLSVTIGIMLAYLLGLFV WR+LAVLGVLPCTLLIPGLFFIPESPRWLAKMG+T+DFE+
Sbjct: 180 NQLSVTIGIMLAYLLGLFVPWRILAVLGVLPCTLLIPGLFFIPESPRWLAKMGLTDDFET 239
Query: 239 SLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298
SLQVLRGF+TDI++EVNEIKRSVASSS+R+A+RF +LKR+RY+FPLM+GIGLL LQQL G
Sbjct: 240 SLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYFPLMVGIGLLALQQLGG 299
Query: 299 INGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMXX 358
INGVLFYSS IF +AG++SSNVATFG+GVVQVVATG+ TWL+DKAGRR GM
Sbjct: 300 INGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVDKAGRRLLLMISSIGMTI 359
Query: 359 XXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
+ FVS DS Y+IL ++S+VG+V +VIS SLG+G IPW+IMSE
Sbjct: 360 SLVIVAVAFYLKEFVSPDSNMYNILSMVSVVGVVAMVISCSLGMGPIPWLIMSE 413
|
|
| TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 150/355 (42%), Positives = 225/355 (63%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG GYSSP QA I +DL LTI+EFS+FGSL GAM+GAI SG IA+ +GRKG+
Sbjct: 38 GSFAFGSCAGYSSPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGAITSGPIADLVGRKGA 97
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ +++ ++GWL I F+K L +GRL G+G+G SY VP++IAEIAP+ RG+L +
Sbjct: 98 MRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGAFSYVVPIFIAEIAPKTFRGALTT 157
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
+NQ+ + G+ +++++G V WRVLA++G++PC GLFFIPESPRWLAK+G +FE
Sbjct: 158 LNQILICTGVSVSFIIGTLVTWRVLALIGIIPCAASFLGLFFIPESPRWLAKVGRDTEFE 217
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
++L+ LRG DIS E EI+ + + R + +L ++RY ++I GL+V QQ
Sbjct: 218 AALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQRRYIRSVLIAFGLMVFQQFG 277
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMX 357
GING+ FY+S+IF AG + + V+QVV T +N ++D+AGR+ G+
Sbjct: 278 GINGICFYTSSIFEQAGFPT-RLGMIIYAVLQVVITALNAPIVDRAGRKPLLLVSATGLV 336
Query: 358 XXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
++ + + +L++VG++ + SFS G+GA+PWV+MSE
Sbjct: 337 IGCLIAAVSF----YLKVHDMAHEAVPVLAVVGIMVYIGSFSAGMGAMPWVVMSE 387
|
|
| TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 156/355 (43%), Positives = 227/355 (63%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG GYSSP Q+++ +L L+++E+S+FGS+ +GAM+GA SG+IA+ IGR+ +
Sbjct: 42 GSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGAAMSGRIADMIGRRAT 101
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ + + I+GWL I SK + +L +GR L G+G+GV S+ VPVYIAEI P+ +RG +
Sbjct: 102 MGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKGLRGGFTT 161
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
V+QL + +G+ + YLLG F+ WR+LA++G++PC + + GLF IPESPRWLAK+G E+FE
Sbjct: 162 VHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWLAKVGKWEEFE 221
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG DIS E NEIK + + +L + +Y L++G+GL+VLQQ
Sbjct: 222 IALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVGVGLMVLQQFG 281
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMX 357
G+NG+ FY+S+IF +AG+SS + + VVQ+ T + LMDK+GRR G
Sbjct: 282 GVNGIAFYASSIFESAGVSSK-IGMIAMVVVQIPMTTLGVLLMDKSGRRPLLLISATGTC 340
Query: 358 XXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
+ FV + S S L +L G++ SFSLG+G IPWVIMSE
Sbjct: 341 IGCFLVGLSFSLQ-FVKQLSGDASYL---ALTGVLVYTGSFSLGMGGIPWVIMSE 391
|
|
| TAIR|locus:2144975 AT5G18840 "AT5G18840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 150/355 (42%), Positives = 224/355 (63%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G +FG GYS+PTQ+ I DL L+++EFS+FGS+ +GAM+GA+ SG+I+++ GRKG+
Sbjct: 54 GSFEFGSCVGYSAPTQSSIRQDLNLSLAEFSMFGSILTIGAMLGAVMSGKISDFSGRKGA 113
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ +A I GWL + F+K + L +GR G+G+GV SY VPVYIAEI+P+N+RG L +
Sbjct: 114 MRTSACFCITGWLAVFFTKGALLLDVGRFFTGYGIGVFSYVVPVYIAEISPKNLRGGLTT 173
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
+NQL + IG +++L+G ++W+ LA+ G+ PC +L+ GL FIPESPRWLAK G ++F
Sbjct: 174 LNQLMIVIGSSVSFLIGSLISWKTLALTGLAPCIVLLFGLCFIPESPRWLAKAGHEKEFR 233
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG D DI+ E + I+ S+ + R +L K+Y ++IG+ L+V QQ
Sbjct: 234 VALQKLRGKDADITNEADGIQVSIQALEILPKARIQDLVSKKYGRSVIIGVSLMVFQQFV 293
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMX 357
GING+ FY+S F AG +S + T + VQV T + T L+DK+GRR G+
Sbjct: 294 GINGIGFYASETFVKAGFTSGKLGTIAIACVQVPITVLGTILIDKSGRRPLIMISAGGIF 353
Query: 358 XXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
+G S + L++ G++ V +FS+G+G +PWVIMSE
Sbjct: 354 LGCILTGTSFLLKG----QSLLLEWVPSLAVGGVLIYVAAFSIGMGPVPWVIMSE 404
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| TAIR|locus:2096219 AT3G05150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
Identities = 150/356 (42%), Positives = 222/356 (62%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G +FG GYS+PTQ I+ +L L+ S+FS+FGS+ N+GA++GAI SG+I+++IGRKG+
Sbjct: 45 GSYEFGTCVGYSAPTQFGIMEELNLSYSQFSVFGSILNMGAVLGAITSGKISDFIGRKGA 104
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ +++V + IGWLII +K L GR L G+G G +S+ VPV+IAEI+P+ +RG+L +
Sbjct: 105 MRLSSVISAIGWLIIYLAKGDVPLDFGRFLTGYGCGTLSFVVPVFIAEISPRKLRGALAT 164
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
+NQL + IG+ +L+G VNWR LA+ GV PC +L G +FIPESPRWL +G DFE
Sbjct: 165 LNQLFIVIGLASMFLIGAVVNWRTLALTGVAPCVVLFFGTWFIPESPRWLEMVGRHSDFE 224
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG +I+ E EI+ +AS + +L K+ +++G+GL+ QQ
Sbjct: 225 IALQKLRGPQANITREAGEIQEYLASLAHLPKATLMDLIDKKNIRFVIVGVGLMFFQQFV 284
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVN-TWLMDKAGRRXXXXXXXXGM 356
GINGV+FY+ IF +AG +S + + + QVV T + T L+D+ GRR GM
Sbjct: 285 GINGVIFYAQQIFVSAG-ASPTLGSILYSIEQVVLTALGATLLIDRLGRRPLLMASAVGM 343
Query: 357 XXXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
+ I+ L++ G++ + SFS+G+GAIPWVIMSE
Sbjct: 344 LIGCLLIGNSF----LLKAHGLALDIIPALAVSGVLVYIGSFSIGMGAIPWVIMSE 395
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| TAIR|locus:2036084 ERD6 "EARLY RESPONSE TO DEHYDRATION 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 138/350 (39%), Positives = 217/350 (62%)
Query: 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAA 122
G G+SS QA I DL L+++E+S+FGS+ +G ++GA+ SG++A+ +GRK +++
Sbjct: 73 GCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGKVADVLGRKRTMLFCE 132
Query: 123 VPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLS 182
I GWL ++ ++++ +L GRLL G GVG+ SY +PVYIAEIAP+++RGS NQL
Sbjct: 133 FFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVRGSFVFANQLM 192
Query: 183 VTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQV 242
GI L +++G F+ WR+L V+G++PC + LFFIPESPRWLAK+G ++ SSLQ
Sbjct: 193 QNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWLAKLGRDKECRSSLQR 252
Query: 243 LRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGV 302
LRG D DIS E N I+ ++ + + +EL ++RY +PL+IG+GL+ LQQL G +GV
Sbjct: 253 LRGSDVDISREANTIRDTIDMTENGGETKMSELFQRRYAYPLIIGVGLMFLQQLCGSSGV 312
Query: 303 LFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMXXXXXX 362
+Y+S++F G S+ + T + + V + T L+DK GRR M
Sbjct: 313 TYYASSLFNKGGFPSA-IGTSVIATIMVPKAMLATVLVDKMGRRTLLMASCSAMGLSALL 371
Query: 363 XXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
+ F + I + +G++ ++SF++G+G +PW+IM+E
Sbjct: 372 LSVSYGFQSF----GILPELTPIFTCIGVLGHIVSFAMGMGGLPWIIMAE 417
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| TAIR|locus:2146350 SFP1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 141/356 (39%), Positives = 212/356 (59%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG GY+S + ++ DL L+I++FS FGS A +GA +GA+ G +A IGR+G+
Sbjct: 41 GSFSFGVATGYTSGAETGVMKDLDLSIAQFSAFGSFATLGAAIGALFCGNLAMVIGRRGT 100
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ ++ I GWL I+F+K+ L GR++ G G G+ SY VPVYIAEI P+++RG+
Sbjct: 101 MWVSDFLCITGWLSIAFAKEVVLLNFGRIISGIGFGLTSYVVPVYIAEITPKHVRGTFTF 160
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
NQL G+ + Y G F+ WR LA+LG LPC + + GLFF+PESPRWLAK+G ++ E
Sbjct: 161 SNQLLQNAGLAMIYFCGNFITWRTLALLGALPCFIQVIGLFFVPESPRWLAKVGSDKELE 220
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+SL LRG D DIS E +EI+ + F++L +++Y + L++GIGL+++QQ S
Sbjct: 221 NSLFRLRGRDADISREASEIQVMTKMVENDSKSSFSDLFQRKYRYTLVVGIGLMLIQQFS 280
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMX 357
G V+ Y+S IF AG S + + T LG+ + + L+DK GRR GM
Sbjct: 281 GSAAVISYASTIFRKAGFSVA-IGTTMLGIFVIPKAMIGLILVDKWGRRPLLMTSAFGMS 339
Query: 358 XXXXXXXXXXXXEGFVSEDSRFYSILG-ILSLVGLVTVVISFSLGVGAIPWVIMSE 412
F + + S L ILS + ++ + ++++G+G +PWVIMSE
Sbjct: 340 MTCMLLGVA-----FTLQKMQLLSELTPILSFICVMMYIATYAIGLGGLPWVIMSE 390
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| TAIR|locus:2079802 AT3G05400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 146/351 (41%), Positives = 206/351 (58%)
Query: 62 FGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA 121
FG GY++ T + I+SDL L++++FS+FGSL+ G M+GAI S + A G K +L +A
Sbjct: 40 FGAAIGYTADTMSSIMSDLDLSLAQFSLFGSLSTFGGMIGAIFSAKAASAFGHKMTLWVA 99
Query: 122 AVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQL 181
+ I GWL IS +KD +L MGR L G GVG+ISY VPVYIAEI P+++RG+ NQL
Sbjct: 100 DLFCITGWLAISLAKDIIWLDMGRFLVGIGVGLISYVVPVYIAEITPKHVRGAFTFSNQL 159
Query: 182 SVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQ 241
G+ + Y G F++WR LA++G +PC + + GLFFIPESPRWLAK G ++ E LQ
Sbjct: 160 LQNCGVAVVYYFGNFLSWRTLAIIGSIPCWIQVIGLFFIPESPRWLAKKGRDKECEEVLQ 219
Query: 242 VLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGING 301
LRG DI E EIK SV +S + + I L KRY L IGIGL++LQQL G G
Sbjct: 220 KLRGRKYDIVPEACEIKISVEASKKNSNINIRSLFEKRYAHQLTIGIGLMLLQQLCGTAG 279
Query: 302 VLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMXXXXX 361
+ Y S +F AG + + L ++ V + + L+D+ GRR G+
Sbjct: 280 ISSYGSTLFKLAGFPA-RIGMMVLSLIVVPKSLMGLILVDRWGRRPLLMTSALGLCLSCI 338
Query: 362 XXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
V + I I +G+++ + F++G+GA+PW+IMSE
Sbjct: 339 TLAVAFG----VKDVPGIGKITPIFCFIGILSFTMMFAIGMGALPWIIMSE 385
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| TAIR|locus:505006329 AT3G05165 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 140/352 (39%), Positives = 210/352 (59%)
Query: 62 FGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA 121
+G GY+S + I+ +L L++++FS FGS NVG VGA+ SGQ+A +GR+ +L
Sbjct: 44 YGCAAGYTSGAETAIMKELDLSMAQFSAFGSFLNVGGAVGALFSGQLAVILGRRRTLWAC 103
Query: 122 AVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQL 181
+ GWL I+F+K+ +L +GR+ G GVG+ISY VPVYIAEI P+++RG+ + NQL
Sbjct: 104 DFFCVFGWLSIAFAKNVFWLDLGRISLGIGVGLISYVVPVYIAEITPKHVRGAFTASNQL 163
Query: 182 SVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQ 241
G+ L Y G +NWRV+AV+G +PC L G+FFIPESPRWLAK+ ++++ ESSL
Sbjct: 164 LQNSGVSLIYFFGTVINWRVMAVIGAIPCILQTIGIFFIPESPRWLAKIRLSKEVESSLH 223
Query: 242 VLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGING 301
LRG DTD+S E EI+ + F+++ +K+Y L++GIGL+++QQLSG +G
Sbjct: 224 RLRGKDTDVSGEAAEIQVMTKMLEEDSKSSFSDMFQKKYRRTLVVGIGLMLIQQLSGASG 283
Query: 302 VLFYSSNIFANAGISSS-NVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMXXXX 360
+ +YS+ IF AG S FG+ V+ G+ L+D+ GRR GM
Sbjct: 284 ITYYSNAIFRKAGFSERLGSMIFGVFVIPKALVGLI--LVDRWGRRPLLLASAVGMSIGS 341
Query: 361 XXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
+ + + ++ I V ++ F+ G+G +PWVIMSE
Sbjct: 342 LLIGVSFTLQ----QMNVLPELIPIFVFVNILVYFGCFAFGIGGLPWVIMSE 389
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q93YP9 | ERDL4_ARATH | No assigned EC number | 0.7850 | 0.9762 | 0.8422 | no | no |
| Q9FRL3 | ERDL6_ARATH | No assigned EC number | 0.7845 | 0.9762 | 0.8439 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00024920001 | SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (486 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 421 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 2e-79 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-63 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 1e-41 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 3e-21 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 4e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-14 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-12 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 1e-08 | |
| PRK15075 | 434 | PRK15075, PRK15075, citrate-proton symporter; Prov | 2e-07 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 5e-07 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 4e-06 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 2e-05 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 9e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-04 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 4e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 6e-04 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 0.001 | |
| COG2270 | 438 | COG2270, COG2270, Permeases of the major facilitat | 0.003 | |
| TIGR00792 | 437 | TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuron | 0.003 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 251 bits (644), Expect = 2e-79
Identities = 140/383 (36%), Positives = 211/383 (55%), Gaps = 29/383 (7%)
Query: 51 CVLVVALGPIQFGFTCGYSSPTQAEI-----------ISDLKLTISEFSIFGSLANVGAM 99
LV ALG FG+ G I I + + S+ +VG +
Sbjct: 1 LALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCL 60
Query: 100 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF--LFMGRLLEGFGVGVISY 157
+G++ +G++ + GRK SL+I V +IG L+ F+K SF L +GR++ G GVG IS
Sbjct: 61 IGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISV 120
Query: 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN-------WRVLAVLGVLPC 210
VP+YI+EIAP+ +RG+LGS+ QL +T GI++A ++GL +N WR+ L +P
Sbjct: 121 LVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPA 180
Query: 211 TLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAI 270
LL+ GL F+PESPRWL G E+ + L LRG D+ E+ E K S+ S
Sbjct: 181 ILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVS-DVDQEIQEEKDSLERSVEAEKA 239
Query: 271 RFAELKRKR-YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQ 329
+ EL R + L++G+ L + QQL+GIN + +YS IF G+S S + T +GVV
Sbjct: 240 SWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVN 299
Query: 330 VVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLV 389
V T + +L+D+ GRR LLL+ ++GMA F ++ VA GI+++V
Sbjct: 300 FVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGV-------AKSKGAGIVAIV 352
Query: 390 GLVTVVISFSLGVGAIPWVIMSE 412
++ + F+LG G +PWVI+SE
Sbjct: 353 FILLFIAFFALGWGPVPWVIVSE 375
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Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 1e-63
Identities = 126/397 (31%), Positives = 204/397 (51%), Gaps = 30/397 (7%)
Query: 41 LRDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLT--------ISEFSIFGS 92
L V L+ A+G + FG+ G A + K T S + + S
Sbjct: 19 LGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVS 78
Query: 93 LANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF---LFMGRLLEG 149
+ VG +GA+ +G +++ GRK SL+I A+ +IG +++ + + L +GR+L G
Sbjct: 79 IFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLG 138
Query: 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-------VNWRVL 202
GVG+ S VP+Y++EIAP+ +RG+L S+ QL++T GI++AY G + WR+
Sbjct: 139 IGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIP 198
Query: 203 AVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVA 262
L ++P LL GLFF+PESPRWL G E+ SL LRG + ++E++
Sbjct: 199 LGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDI 258
Query: 263 SSSRRTAIRFAELKRKRYWF-----PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISS 317
S L +G+ L QQ +GIN +++YS IF NAG+S+
Sbjct: 259 KRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST 318
Query: 318 SN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSE 375
+ + + +G V T V +L+D+ GRR LLLI ++GMA F++ + S
Sbjct: 319 DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGA-----SF 373
Query: 376 DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
+ G +++V ++ + F++G G +PWVI+SE
Sbjct: 374 VTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSE 410
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This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 1e-41
Identities = 111/399 (27%), Positives = 177/399 (44%), Gaps = 51/399 (12%)
Query: 48 VVFCVLVVALGPIQFGFTCGYSSPTQ--------AEIISDLKLTISEFSIFGSLANVGAM 99
+ LV LG + FG+ S T A S + A +G +
Sbjct: 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCI 69
Query: 100 VGAIASGQIAEYIGRKGSLMIAAVPNIIG--------WLIISFSKDSSFLFMG----RLL 147
+G G + GR+ SL IAAV I + S D++ R++
Sbjct: 70 IGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII 129
Query: 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---------- 197
G GVG+ S P+YIAEIAP ++RG L S NQ ++ G ++ Y + F+
Sbjct: 130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLN 189
Query: 198 --NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVN 255
WR + +P L + L+F+PE+PR+L G E E L+ + G +T + +
Sbjct: 190 TDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMG-NTLATQALQ 248
Query: 256 EIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGI 315
EIK S+ + ++IG+ L V QQ GIN VL+Y+ IF G
Sbjct: 249 EIKHSLDHGRKTGGKLLMFGV-----GVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGA 303
Query: 316 SSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFV 373
S+ + T +GV+ + T + +DK GR+ L +I + GMA F + AF
Sbjct: 304 STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF------ 357
Query: 374 SEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
+ GI++L+ ++ V +F++ G + WV++SE
Sbjct: 358 -----YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSE 391
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Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 3e-21
Identities = 83/318 (26%), Positives = 140/318 (44%), Gaps = 26/318 (8%)
Query: 89 IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148
+ S VG ++G+ G +++ GRK L+++ + + ++ +FS + + + RLL
Sbjct: 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV 190
Query: 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-NWRVLAVLGV 207
G G+G I V E P+ R +G++ Q+ ++G++L L+ F+ +WR L +
Sbjct: 191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVS 250
Query: 208 LPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFD-TDISIEVNEIKRSVASSSR 266
LP L +F+PESPRWL G E+ LQ + + + EV + SS
Sbjct: 251 LPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSS 310
Query: 267 RTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYS-----SNIFANAGISSSNVA 321
+ F +L R + L L L +Y N+ N + ++
Sbjct: 311 KKQYSFLDLFRTPN-----LRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYL---DLF 362
Query: 322 TFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYS 381
GL V++ A + L+D+ GRR MAAS L VA L FV D F
Sbjct: 363 ISGL--VELPAKLITLLLIDRLGRRY-------TMAASLLLAGVALLLLLFVPVDLYFLR 413
Query: 382 ILGILSLVGLVTVVISFS 399
L+++G + +F
Sbjct: 414 T--ALAVLGKFGITSAFQ 429
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[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 77.3 bits (190), Expect = 4e-15
Identities = 57/185 (30%), Positives = 80/185 (43%), Gaps = 20/185 (10%)
Query: 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123
F G+ P+ AE DL + S + G + +G MVGA G +A+ +GRK L+I
Sbjct: 184 FVVGFVLPS-AE--KDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240
Query: 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS--------- 174
N SF + F RLL GFG+G V Y AE Q RG
Sbjct: 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFW 300
Query: 175 -LGSVNQLSVTIGIMLAYLLGL-------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRW 226
+G + ++ I+ Y F +WRV ++ PC I L F+PESPR+
Sbjct: 301 MIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRF 360
Query: 227 LAKMG 231
+ G
Sbjct: 361 FLENG 365
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 8e-14
Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 4/174 (2%)
Query: 52 VLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY 111
+L++ LG G G SP + DL L+ S+ + S ++G +G++ +G +++
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 112 IGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM 171
GR+ L++ + +G L+++F+ L +GR L G G G + IAE P
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120
Query: 172 RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIP 221
RG + +G +L LLG + WR L ++ + LL L F+
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 68/313 (21%), Positives = 125/313 (39%), Gaps = 24/313 (7%)
Query: 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126
G+++P I ++ L + S +G GA+ G +A+ IGR+ L+ + +
Sbjct: 37 GFAAPA---ISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFS 93
Query: 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG 186
+ L+ + + + + L + R L G G+G + + ++E AP+ RG+ + IG
Sbjct: 94 VFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIG 153
Query: 187 IMLAYLLGLFV----NWRVL-AVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQ 241
+ L ++ WR L V G+ P LL+ + F+PES +L
Sbjct: 154 AAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR-------PET 206
Query: 242 VLRGFDTDISIEVNEIKRSVASSSRRTAIR---FAELKRKRYWFPLMIGIGLLVLQQLSG 298
V R + E + ++ + F L + + + + + LL L G
Sbjct: 207 VRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTAR-ITVLLWLLYFMLLVG 265
Query: 299 INGVLFYSSNIFANAGISSSNVATFGLGVVQVVATG--VNTWLMDKAGRRLLLLISSSGM 356
+ + + + G S S AT G G + WL D+ G R+ L+ +
Sbjct: 266 VYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL---L 322
Query: 357 AASFFLVSVAFFL 369
+ F V V L
Sbjct: 323 LGAVFAVLVGSTL 335
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 66/284 (23%), Positives = 119/284 (41%), Gaps = 43/284 (15%)
Query: 100 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII----SFSKDSSF----LFMGRLLEGFG 151
+GAI G + IGRK +L+I + IG L+I S++ + L + RL++GF
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCT 211
+G +Y+AE AP RG GS Q+ +G++LA L L +++ +L +L
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY-LLGDDALLEWG 168
Query: 212 LLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIR 271
IP L S++ VL G ++E + ++
Sbjct: 169 WRIPFLV-------------------SAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGP 209
Query: 272 FAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA------NAGISSSNV--ATF 323
AE K + P ++G+GL++ FY + G+S+++
Sbjct: 210 IAETLTK-HRKPFLLGLGLVIATT------TTFYLITTYLPTYLTQTLGLSANSALLVLM 262
Query: 324 GLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAF 367
++ + ++ L D+ GRR +L+I + A + +A
Sbjct: 263 LSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL 306
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 59/190 (31%), Positives = 84/190 (44%), Gaps = 47/190 (24%)
Query: 62 FGFTCGYSS----PTQAEIISDLKLTISEFSIFGSLANVGAM---VGAIASGQIAEYIGR 114
FGF + P E S L LT F++FG G + +GAI G + +GR
Sbjct: 34 FGFYATAIAKTFFPAGNEFAS-LMLT---FAVFG----AGFLMRPLGAIVLGAYIDRVGR 85
Query: 115 K------------GSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVY 162
+ G+L+IA VP G+ I + L GRLL+GF GV V VY
Sbjct: 86 RKGLIVTLSIMASGTLLIAFVP---GYATIGLAAPLLVLL-GRLLQGFSAGVELGGVSVY 141
Query: 163 IAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN------------WRVLAVLGVLPC 210
+AEIA +G S S + ++ A LLG +N WR+ ++G C
Sbjct: 142 LAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIG---C 198
Query: 211 TLLIPGLFFI 220
L++P +F I
Sbjct: 199 -LIVPFIFLI 207
|
Length = 434 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 5e-07
Identities = 51/303 (16%), Positives = 107/303 (35%), Gaps = 36/303 (11%)
Query: 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135
+ DL ++ +E + + ++G + +G++++ GR+ L+I + +G L++ F+
Sbjct: 23 LAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA 82
Query: 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195
L + R+L+G G G + IA+ P RG + +G L LLG
Sbjct: 83 SSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGG 142
Query: 196 FV----NWR-VLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI 250
+ WR +L +L + +P P
Sbjct: 143 LLASLFGWRAAFLILAILALLAAVLAALLLPRPPP------------------------- 177
Query: 251 SIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIF 310
E KR + + A R ++ LL + L +
Sbjct: 178 -----ESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVL 232
Query: 311 ANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLE 370
+ + + + G++ + + L D+ GRR LL++ + + +++ E
Sbjct: 233 GLSALLAGLLLGLA-GLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTE 291
Query: 371 GFV 373
+
Sbjct: 292 SSL 294
|
Length = 346 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 15/177 (8%)
Query: 79 DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS 138
+ L +++ S +G + GA+ G++A+ IGRK L+++ + G ++ ++
Sbjct: 44 EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA--LFGLFSLATAQAW 101
Query: 139 SF--LFMGRLLEGFGVGVISYTVPVYIA---EIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193
F L + RLL G G+G +P IA E +RG+ S+ V G LA ++
Sbjct: 102 DFPSLLVARLLTGVGLGG---ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI 158
Query: 194 GLF----VNWRVLAVLGVLPCTLLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRG 245
G+ WR + +G + LL+P L ++PES + G + L+ L G
Sbjct: 159 GVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFG 215
|
Length = 406 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 60/288 (20%), Positives = 111/288 (38%), Gaps = 22/288 (7%)
Query: 74 AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133
AE+ + LT + + S A + GA+ G + GR+ ++ + V G L
Sbjct: 36 AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACG 95
Query: 134 FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193
F+ +F+ RL+ G G+G + Y+ E P+++R + +G ++A +
Sbjct: 96 FAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQV 155
Query: 194 GLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFD 247
V WR L + +LP + IPE ED++
Sbjct: 156 YSLVVPVWGDGWRALFFISILPIIFALWLRKNIPE----------AEDWKEKHAGKALVR 205
Query: 248 TDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS-GINGVLFYS 306
T + I + + +A+ A + KR+ + + + +L S I +
Sbjct: 206 TMVDI-LYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDL--LP 262
Query: 307 SNIFANAGISSSNVA--TFGLGVVQVVATGVNTWLMDKAGRRLLLLIS 352
+ + A+ G+S VA + +V V +L D GRR + S
Sbjct: 263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCS 310
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 9e-05
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Query: 96 VGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVI 155
+G ++ + SG + + GRK L++ ++ + + S + + L + R L+GFG
Sbjct: 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68
Query: 156 SYTVPVYIAEIAPQNMR----GSLGSVNQLSVTIGIMLAYLLGLFVNWRVL-AVLGVLPC 210
IA+I P R G + + L +G L +L F+ WR L +L
Sbjct: 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL 128
Query: 211 TLLIPGLFFIPES 223
I F +PE+
Sbjct: 129 AAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP-NIIGWLIISFSKDS 138
L L+ +E + SL +G ++GA+ G +++ +GR+ L++ + +G L+++ +
Sbjct: 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL 265
Query: 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG--LF 196
+ L + LL GFG+G + +E+AP RG+ + ++G L LL L
Sbjct: 266 ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL 325
Query: 197 VNWRVLAVLGVLPCTLLIPGLFF 219
V +L L+ L
Sbjct: 326 DTGGYGGVFLILAALALLAALLL 348
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 4/173 (2%)
Query: 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134
E+ + LT + + S A + G + G + + GR+ +++I+ V +G L F
Sbjct: 45 EVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGF 104
Query: 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194
+ LF+ RL+ G G+ + Y+ E P+++R +IG ++A +
Sbjct: 105 APGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY 164
Query: 195 LFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVL 243
V WR L +G+LP + +PE+ W K + + +L
Sbjct: 165 SLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDIL 217
|
Length = 496 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 8/148 (5%)
Query: 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134
I +DL ++ + +G +GA + + R+ L+ I+ L+ +
Sbjct: 38 PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL 97
Query: 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS-LGSVN---QLSVTIGIMLA 190
+ + L + R L G GV A + P RG L V L+ +G+ L
Sbjct: 98 APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLG 157
Query: 191 YLLGLFVNWR----VLAVLGVLPCTLLI 214
LG WR +AVL +L LL
Sbjct: 158 TFLGQLFGWRATFLAIAVLALLALLLLW 185
|
Length = 394 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.001
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 4/155 (2%)
Query: 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135
I +DL LT E + + A +G G G +A+ GRK +M + V +G + +
Sbjct: 44 IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA 103
Query: 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG-IMLAYLLG 194
L + R + G G+ Y E P++++ + IG I+ AY +
Sbjct: 104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMP 163
Query: 195 LFVN---WRVLAVLGVLPCTLLIPGLFFIPESPRW 226
F WR +G+LP L+I PES W
Sbjct: 164 SFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEW 198
|
Length = 426 |
| >gnl|CDD|225179 COG2270, COG2270, Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 5/154 (3%)
Query: 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK 136
+DL L+ +E + G +V A +GAI +G + E G K LMI V I L + F +
Sbjct: 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE 339
Query: 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG-IMLAYLLGL 195
++ LL G +G + Y+A + P+ G + L+ + +L+ +
Sbjct: 340 GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAV 399
Query: 196 FVNWRVLAVLGVLPCTLL----IPGLFFIPESPR 225
+ GVL +L + L + R
Sbjct: 400 ITQITGSSRAGVLSIIVLLLIGLLLLLRVKVPGR 433
|
Length = 438 |
| >gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 86 EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM-G 144
FS GS+A ++G + ++ + GRK + ++G+LI F+ + L +
Sbjct: 258 LFSYMGSIAIGAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVL 317
Query: 145 RLLEGFGVGVISYTVPVYIAEI 166
+L GFG ++ V +A+
Sbjct: 318 IILAGFGQNFVTGLVWALVADT 339
|
The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family (TC 2.A.2) GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 437 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.004
Identities = 16/83 (19%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 87 FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF--SKDSSFLFMG 144
FS+ + + A++GA +A+ G+K + ++ + IG +++ F +
Sbjct: 259 FSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVL 318
Query: 145 RLLEGFGVGVISYTVPVYIAEIA 167
+L G G+G+ + +A++
Sbjct: 319 VVLAGIGLGLATLLPWAMLADVV 341
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 421 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.98 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.98 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.98 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.98 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.97 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.97 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.97 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.97 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.97 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.97 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.97 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.97 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.97 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.97 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.97 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.96 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.96 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.96 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.96 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.96 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.96 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.96 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.96 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.96 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.96 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.96 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.96 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.96 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.96 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.96 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.96 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.95 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.95 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.95 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.95 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.95 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.95 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.95 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.95 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.95 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.95 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.95 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.95 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.95 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.94 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.93 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.93 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.93 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.93 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.92 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.92 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.92 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.92 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.91 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.91 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.91 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.91 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.9 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.9 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.9 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.9 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.89 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.88 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.88 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.88 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.87 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.87 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.86 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.85 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.85 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.85 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.85 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.8 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.78 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.76 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.76 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.75 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.74 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.73 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.73 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.71 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.68 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.65 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.65 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.64 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.62 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.61 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.61 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.58 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.57 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.57 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.57 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.56 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.56 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.54 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.54 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.52 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.51 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.51 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.5 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.49 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.49 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.47 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.47 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.44 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.43 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.42 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.41 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.41 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.41 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.39 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.38 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.38 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.38 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.37 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.37 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.37 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.35 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.35 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.35 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.34 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.34 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.33 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.29 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.29 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.29 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.29 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.28 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.27 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.27 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.27 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.25 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.25 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.24 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.22 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.22 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.2 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.2 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.19 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.18 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.18 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.17 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.17 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.15 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.13 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.13 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.13 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.12 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.12 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.12 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.11 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.1 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.1 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.1 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.09 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.07 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.07 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.07 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.05 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.04 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.04 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.04 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.04 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.02 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.02 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.01 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.99 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.99 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.98 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.98 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.98 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.97 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.97 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.96 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.96 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.95 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.94 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.93 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.93 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.92 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.9 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.89 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.86 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.85 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.85 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.84 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.79 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.78 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.78 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.73 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.72 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.71 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.67 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.67 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.65 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.63 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.62 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.58 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.57 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.57 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.54 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.53 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.53 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.5 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.47 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.45 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.44 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.44 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.36 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.34 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.33 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.29 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.27 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.25 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.24 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.21 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.21 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.2 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.18 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.1 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.09 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.03 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.02 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.98 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.94 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 97.9 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.74 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.73 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.72 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.66 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.64 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.64 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.58 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.5 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.38 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.38 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.37 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.13 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.01 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.96 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.7 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.66 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 96.66 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.66 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 96.59 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.26 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 95.87 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.76 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.49 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 94.76 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 94.71 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 94.4 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 93.28 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 93.25 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 92.98 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 91.11 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 90.63 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 89.89 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 83.24 | |
| COG1230 | 296 | CzcD Co/Zn/Cd efflux system component [Inorganic i | 82.64 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 81.14 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 80.19 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=295.75 Aligned_cols=371 Identities=33% Similarity=0.593 Sum_probs=310.6
Q ss_pred CchhHHHHHHHHHHHHHHhhhhccccccchHHHH--------hhhC--CChhh----HHHHHHHHHHHHHHHHHHHHHhh
Q 014654 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEII--------SDLK--LTISE----FSIFGSLANVGAMVGAIASGQIA 109 (421)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~--~s~~~----~~~~~s~~~~~~~~~~~~~g~l~ 109 (421)
..++.........++.|-.|++.+..++..+.+. +.+| .++++ .+.+.+++.+|.++|+++.|+++
T Consensus 5 ~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la 84 (485)
T KOG0569|consen 5 LTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLA 84 (485)
T ss_pred ccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777999999999988765443 3455 34433 57889999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHh---hcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHH
Q 014654 110 EYIGRKGSLMIAAVPNIIGWLIISF---SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG 186 (421)
Q Consensus 110 dr~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 186 (421)
||+|||..+.++.++..++.++..+ .+++.+++++|++.|+..|......+-++.|..|++.||....+.+.+..+|
T Consensus 85 ~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g 164 (485)
T KOG0569|consen 85 DRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIG 164 (485)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHH
Confidence 9999999999998888777776655 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccc------chHHHHHhhhHHHHHHHhhhccccCChHHHHH-cCCHHHHHHHHHHHhCCCcchHHHHHHHHH
Q 014654 187 IMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK-MGMTEDFESSLQVLRGFDTDISIEVNEIKR 259 (421)
Q Consensus 187 ~~~~~~~~~~l------~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (421)
..++..++..- .|++.+.+..+++++..+...++||||+|+.. ++++++|++.+++.++..++......+.++
T Consensus 165 ~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e 244 (485)
T KOG0569|consen 165 ILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLRE 244 (485)
T ss_pred HHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence 99997666332 79999999999999999999999999999987 899999999999999987544443333333
Q ss_pred HHhh-cchhhhHHHHHHhhcc-chhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHH
Q 014654 260 SVAS-SSRRTAIRFAELKRKR-YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGV 335 (421)
Q Consensus 260 ~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~ 335 (421)
.+++ .+++++.+++++++++ .+++..+.+.+....++.+.+.+.+|...++++.|++... +.....++..++.+++
T Consensus 245 ~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~ 324 (485)
T KOG0569|consen 245 IEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLV 324 (485)
T ss_pred HHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 2223566788888874 5666777888889999999999999999999999998775 7788889999999999
Q ss_pred HHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCC
Q 014654 336 NTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASE 415 (421)
Q Consensus 336 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 415 (421)
+.++.||+|||++++.+..++.++.+++.+.....+... .+..+..+.+.+++.+.|+.|.+|+++.+.+|++|
T Consensus 325 ~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~------~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~ 398 (485)
T KOG0569|consen 325 SPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG------SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFP 398 (485)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCC
Confidence 999999999999999999999999999888877765411 24445667888899999999999999999999999
Q ss_pred CCCCC
Q 014654 416 LGKPN 420 (421)
Q Consensus 416 ~~~rg 420 (421)
.+.|.
T Consensus 399 ~~~R~ 403 (485)
T KOG0569|consen 399 QSARS 403 (485)
T ss_pred ccchH
Confidence 99885
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=296.05 Aligned_cols=375 Identities=37% Similarity=0.592 Sum_probs=311.7
Q ss_pred CchhHHHHHHHHHHHHHHhhhh--ccccccchHHHHhhhC-----CCh--hhHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 014654 44 GSVSVVFCVLVVALGPIQFGFT--CGYSSPTQAEIISDLK-----LTI--SEFSIFGSLANVGAMVGAIASGQIAEYIGR 114 (421)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~-----~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr 114 (421)
.............++.+..+++ .+..++....+.++.. .+. ++.+++.+.+.++..+++++.|+++|++||
T Consensus 39 ~~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GR 118 (513)
T KOG0254|consen 39 ISPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGR 118 (513)
T ss_pred CceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455666667777777888886 6677777777776432 222 345999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhh
Q 014654 115 KGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (421)
Q Consensus 115 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 194 (421)
|+.++++.+++.++.+++++++|+++++++|+++|+|.|......+.+++|..|++.||...+..+....+|..++..++
T Consensus 119 k~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~ 198 (513)
T KOG0254|consen 119 KKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCIN 198 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccc-----chHHHHHhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCC-cchHHHHHHHHHH--Hhhcch
Q 014654 195 LFV-----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFD-TDISIEVNEIKRS--VASSSR 266 (421)
Q Consensus 195 ~~l-----~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~ 266 (421)
... +||..+.+..+++++..+..+++||+|+|+.++++.+++++.+.++++.+ .+.+.+..+.+.. .+....
T Consensus 199 ~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 278 (513)
T KOG0254|consen 199 YGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVA 278 (513)
T ss_pred hhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcc
Confidence 776 69999999999888888888899999999999999999999999999843 3333333333311 111111
Q ss_pred hhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCch-hHHHHHHHHHHHHHHHHHHHHhhccCC
Q 014654 267 RTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSS-NVATFGLGVVQVVATGVNTWLMDKAGR 345 (421)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~ 345 (421)
..+..+.+++++...++..+...+..++++++.+...+|.+.+++..|.+.. .......++..+++..++.++.||+||
T Consensus 279 ~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gR 358 (513)
T KOG0254|consen 279 EGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGR 358 (513)
T ss_pred cccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222466677766777888899999999999999999999999999998766 566777788899999999999999999
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 346 RLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
|++++.+...+.+++++++........... ......+..+...+++...|+.++.|+++.+.+|.+|.+.|++
T Consensus 359 r~lll~s~~~m~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~ 431 (513)
T KOG0254|consen 359 RKLLLFGAAGMSICLVILAVVGVFALYYPN---SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSK 431 (513)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccCCC---cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhh
Confidence 999999999999999999987766543110 1223456777888888999999999999999999999999974
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=301.53 Aligned_cols=360 Identities=24% Similarity=0.232 Sum_probs=274.5
Q ss_pred chhHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q 014654 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (421)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 124 (421)
.+..|.++++++++.+..+++...++..+|.+.+++|++..+.+++.+++.++.+++++++|+++||+|||++++++.++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil 241 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV 241 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 46677777888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhcc--------
Q 014654 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-------- 196 (421)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-------- 196 (421)
.+++.++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.+++...++.+|.++++.++..
T Consensus 242 ~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~ 321 (742)
T TIGR01299 242 NGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS 321 (742)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 999999999999999999999999999999999999999999999999999999999999999888865422
Q ss_pred ---------cchHHHHHhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcch----HHH--HHHHHHHH
Q 014654 197 ---------VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI----SIE--VNEIKRSV 261 (421)
Q Consensus 197 ---------l~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~ 261 (421)
.+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++...+... ... ..+.+...
T Consensus 322 ~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~ 401 (742)
T TIGR01299 322 FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIH 401 (742)
T ss_pred hccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhh
Confidence 169999999888888887788889999999999999999999999988765321 110 01111100
Q ss_pred ------h--hcch---------------hhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhc-----
Q 014654 262 ------A--SSSR---------------RTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA----- 313 (421)
Q Consensus 262 ------~--~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 313 (421)
+ .... .....++++++++.++..++...+ ++.....++.+..|.|.++++.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~-wf~~~~~yygl~~w~P~~~~~~~~~~~ 480 (742)
T TIGR01299 402 QEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGV-WFTLSFGYYGLSVWFPDMIKHLQADDY 480 (742)
T ss_pred hhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 001135667777666665554444 4444455788888888775431
Q ss_pred -------------------------------------CC-----C-----------------------------------
Q 014654 314 -------------------------------------GI-----S----------------------------------- 316 (421)
Q Consensus 314 -------------------------------------g~-----~----------------------------------- 316 (421)
|+ +
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 560 (742)
T TIGR01299 481 AALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTD 560 (742)
T ss_pred Hhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccc
Confidence 00 0
Q ss_pred -----------------------------c-----h-hHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHH
Q 014654 317 -----------------------------S-----S-NVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFF 361 (421)
Q Consensus 317 -----------------------------~-----~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 361 (421)
+ . .....+.+++.+++.+++|+++||+|||+++..+.++.+++++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~l 640 (742)
T TIGR01299 561 FEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCF 640 (742)
T ss_pred hhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 0 0 0224455688899999999999999999999999888888877
Q ss_pred HHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 362 LVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
+++.... ....++..+++.++ ..+..+..+++++|++|++.||+
T Consensus 641 l~~~~~s---------------~~~ll~~~~l~g~~-~~~~~~~~~a~~aEl~Pt~~Rgt 684 (742)
T TIGR01299 641 FLSFGNS---------------ESAMIALLCLFGGL-SIAAWNALDVLTVELYPSDKRAT 684 (742)
T ss_pred HHHHHcc---------------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCHHHHHH
Confidence 6664211 01122222222322 22345667899999999999974
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=281.44 Aligned_cols=359 Identities=30% Similarity=0.471 Sum_probs=266.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccccchHHHHhhh--------CCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHH
Q 014654 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDL--------KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117 (421)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~ 117 (421)
+....+++...++.+.++++...+++..|.+++++ +.+.++.+++.+++.++..++++++|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 44566667777888999999999999999999987 8889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh------------cchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHH
Q 014654 118 LMIAAVPNIIGWLIISFS------------KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI 185 (421)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 185 (421)
++++.+++.++.+.++++ +.++.++++|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999999998887763 22467789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc------------ccchHHHHHhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHH
Q 014654 186 GIMLAYLLGL------------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIE 253 (421)
Q Consensus 186 G~~~~~~~~~------------~l~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (421)
|..+++.++. ..+||+.|++.++..++..+..+++||+|+++..+++.+++.+..++..+.+. ....
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 246 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL-ATQA 246 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh-HHHH
Confidence 9988876643 23899999998877777766677899999998888888877766666554331 1111
Q ss_pred HHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHH
Q 014654 254 VNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVV 331 (421)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~ 331 (421)
.++.++..+++.. .....+. ..............+....+.+...++.|.+.++.|.+... ......++..++
T Consensus 247 ~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i 321 (479)
T PRK10077 247 LQEIKHSLDHGRK----TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLT 321 (479)
T ss_pred HHHHHHHHHHhhh----hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 1111111100000 0011111 01111222223333444445566677889888888886543 555567788899
Q ss_pred HHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhcc
Q 014654 332 ATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMS 411 (421)
Q Consensus 332 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (421)
+.++.++++||+|||++++.+.++.+++++++......+.. ......++.++..+++.++.|+.+.+++
T Consensus 322 ~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (479)
T PRK10077 322 FTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-----------GIVALLSMLFYVAAFAMSWGPVCWVLLS 390 (479)
T ss_pred HHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcc-----------cHHHHHHHHHHHHHHhccccchhHHHhH
Confidence 99999999999999999999999888887777644321111 1223334455556666666788899999
Q ss_pred ccCCCCCCCC
Q 014654 412 EASELGKPNQ 421 (421)
Q Consensus 412 e~~p~~~rg~ 421 (421)
|.+|++.|++
T Consensus 391 e~~p~~~r~~ 400 (479)
T PRK10077 391 EIFPNAIRGK 400 (479)
T ss_pred hhCChhHHHH
Confidence 9999998874
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=285.34 Aligned_cols=361 Identities=18% Similarity=0.190 Sum_probs=259.6
Q ss_pred chhHHHHHHHHHHHHHHhhhhccccccchHHHHhhh-----CCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHH
Q 014654 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDL-----KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119 (421)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~ 119 (421)
.+.++.+.+++.++.+.++++....+...|.+.+++ +.+..+.+++.+.+.+++.+++++.|+++||+|||+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~ 90 (502)
T TIGR00887 11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG 90 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 356667778888899999999999999999887753 345667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcc------hhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHh
Q 014654 120 IAAVPNIIGWLIISFSKD------SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193 (421)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 193 (421)
++.++..++.++++++++ ++.++++|+++|++.|...+....++.|++|+++|++++++.+....+|..+++.+
T Consensus 91 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~ 170 (502)
T TIGR00887 91 MELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIV 170 (502)
T ss_pred HHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888776 67899999999999999999999999999999999999999999999998888766
Q ss_pred hcc---------------------------cchHHHHHhhhHHHHHHHhhhccccCChHHHHHcCCHH-HHHHHHHHHhC
Q 014654 194 GLF---------------------------VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTE-DFESSLQVLRG 245 (421)
Q Consensus 194 ~~~---------------------------l~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~ 245 (421)
+.. .+||+++.+.+++.++..+..+++||+|+|+..+++++ ++.+.+.+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~ 250 (502)
T TIGR00887 171 ALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQ 250 (502)
T ss_pred HHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence 531 16999999888888888778888999999999887764 46665655543
Q ss_pred CCcchH-HHHHHHHHHHhhcchhhhHHHHHHhhcc---chhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--
Q 014654 246 FDTDIS-IEVNEIKRSVASSSRRTAIRFAELKRKR---YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN-- 319 (421)
Q Consensus 246 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 319 (421)
.+.+.+ ++.++.++ +++..+.+++++++++ ..++..+.....++.....++....+.|.++++.|++...
T Consensus 251 ~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~ 326 (502)
T TIGR00887 251 VKIEAEPDEVEKAST----AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAAT 326 (502)
T ss_pred cccccCcccccchhc----cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccc
Confidence 221111 11111110 1111123566776532 1212222222222222222344556678888888875431
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHH
Q 014654 320 ------------VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILS 387 (421)
Q Consensus 320 ------------~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (421)
.......++.+++.++.++++||+|||++++.+..+..+++++++....... ....
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~----------~~~~-- 394 (502)
T TIGR00887 327 NNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS----------THGF-- 394 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc----------hhHH--
Confidence 0123334566778899999999999999998888887777766664321100 0011
Q ss_pred HHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 388 LVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
+....++..+++.+..++.+.+.+|.+|++.|++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~ 428 (502)
T TIGR00887 395 LAIYVLAQFFANFGPNATTFIVPGEVFPTRYRST 428 (502)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhhccCchhHHHH
Confidence 1112222334466677888999999999999985
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=271.92 Aligned_cols=373 Identities=34% Similarity=0.573 Sum_probs=271.0
Q ss_pred CchhHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCC--------hhhHHHHHHHHHHHHHHHHHHHHHhhhhhchH
Q 014654 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLT--------ISEFSIFGSLANVGAMVGAIASGQIAEYIGRK 115 (421)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr 115 (421)
..++.+...+++.++.+..+++...+.+..+.+..+++.+ ..+.+++.+++.++..+++++.|+++||+|||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr 101 (481)
T TIGR00879 22 TYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRK 101 (481)
T ss_pred ccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhH
Confidence 3456666667777788888999999999999999888877 78999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc---chhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHH
Q 014654 116 GSLMIAAVPNIIGWLIISFSK---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL 192 (421)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 192 (421)
++++.+.++.+++.+++.+.. +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 181 (481)
T TIGR00879 102 KSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYG 181 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999986644 44589999999999999999999999999999999999999999999999999999
Q ss_pred hh---cc----cchHHHHHhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHH---HHHHHh
Q 014654 193 LG---LF----VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNE---IKRSVA 262 (421)
Q Consensus 193 ~~---~~----l~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 262 (421)
++ .. .+||+.|++.++..++.++..+++||+|++...+++.+++.+...+....+.......+. .....+
T Consensus 182 ~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (481)
T TIGR00879 182 FGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRS 261 (481)
T ss_pred HHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 98 43 389999999777777777777788999988777777666655555444332211111110 000000
Q ss_pred hcchhhhHHHHHHhhcc--chhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHH
Q 014654 263 SSSRRTAIRFAELKRKR--YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTW 338 (421)
Q Consensus 263 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~ 338 (421)
.+.+..+..+.++++.. ..++..+...+..+..........++.+.+.++.|++... .......++.+++.++.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 341 (481)
T TIGR00879 262 IEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIF 341 (481)
T ss_pred HHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111133333321 2344444455555555555566677888888888887644 5566677888999999999
Q ss_pred HhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCC
Q 014654 339 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGK 418 (421)
Q Consensus 339 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 418 (421)
++||++||+.+..+.++.+++++++......... +.. .......+....++..+++.+..++...+..|.+|++.
T Consensus 342 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 416 (481)
T TIGR00879 342 LVDRFGRRPLLLIGAAGMAICLFVLGILGASFVT---GSS--KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL 416 (481)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccC---Ccc--cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH
Confidence 9999999999988887777776666533221111 000 00112333444455666677777888889999999998
Q ss_pred CCC
Q 014654 419 PNQ 421 (421)
Q Consensus 419 rg~ 421 (421)
|++
T Consensus 417 ~~~ 419 (481)
T TIGR00879 417 RPK 419 (481)
T ss_pred HHH
Confidence 863
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=271.75 Aligned_cols=332 Identities=22% Similarity=0.296 Sum_probs=245.2
Q ss_pred cchHHHHhhhCCC---hhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHh
Q 014654 71 PTQAEIISDLKLT---ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLL 147 (421)
Q Consensus 71 ~~~~~i~~~~~~s---~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 147 (421)
+..|.+.+|+|++ ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4567799999999 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-chHHHHHhhhHHHHHHHhhhccccCChHH
Q 014654 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-NWRVLAVLGVLPCTLLIPGLFFIPESPRW 226 (421)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-~w~~~f~~~~~~~~~~~~~~~~~~e~~~~ 226 (421)
.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ +||+.|++.+++.++..+..+++||+|+|
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~ 269 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRW 269 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 99999999999999999999999999999999999999999999998776 89999999888887777777889999999
Q ss_pred HHHcCCHHHHHHHHHHHhCCCcchHH-HHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHh
Q 014654 227 LAKMGMTEDFESSLQVLRGFDTDISI-EVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFY 305 (421)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
+..+++.+++.+.+++....+..... +..+.....+.+++.++..++++++++..+...+...+.++.....++..
T Consensus 270 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 346 (505)
T TIGR00898 270 LISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGL--- 346 (505)
T ss_pred HHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 99999999988887776554432111 11111101111111123467788887776666555444444322222222
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHH
Q 014654 306 SSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGI 385 (421)
Q Consensus 306 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (421)
+......+.+ ........++..+++.++.+++.||+|||+.+..+.++.+++++++.... .. . ..
T Consensus 347 -~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~---~~-----~-----~~ 411 (505)
T TIGR00898 347 -VLDLGNLGGN-IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP---VD-----L-----YF 411 (505)
T ss_pred -hccccccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC---CC-----c-----hH
Confidence 2222233332 22445566788889999999999999999999988888777766655321 00 0 01
Q ss_pred HHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 386 LSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
......++..++.+ +..++.+++.+|.+|++.|++
T Consensus 412 ~~~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~ 446 (505)
T TIGR00898 412 LRTALAVLGKFGIT-SAFQMVYLYTAELYPTVVRNL 446 (505)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhcccccHHHHhh
Confidence 11122222222222 224566789999999999874
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=262.04 Aligned_cols=333 Identities=17% Similarity=0.179 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHhhhhccccccchHHHHhhhCCChhh-HHH-----HHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q 014654 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISE-FSI-----FGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (421)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~~-----~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 124 (421)
......++.+++++|...++...|.+.++++.+.++ .++ +.++.++++.+++++.|+++||+|||+++.++.++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l 96 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 445667788999999999999999999999754422 122 25778899999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhh--------HHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhh--
Q 014654 125 NIIGWLIISFSKDSSF--------LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG-- 194 (421)
Q Consensus 125 ~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-- 194 (421)
++++++++++++|++. ++++|+++|++.|+.++...+++.|++|+++|+++.++...+..+|..+++.+.
T Consensus 97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~ 176 (490)
T PRK10642 97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL 176 (490)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 788999999999999999999999999999999999999988888877776443
Q ss_pred --c--------ccchHHHHHhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhc
Q 014654 195 --L--------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASS 264 (421)
Q Consensus 195 --~--------~l~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (421)
. ..+||+.|++.+++.++.++....+||+|+|...+++.++..+ +..
T Consensus 177 ~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~-----------------------~~~ 233 (490)
T PRK10642 177 ISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR-----------------------EGL 233 (490)
T ss_pred HHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc-----------------------ccc
Confidence 2 2389999999877666666566678999987543222111000 000
Q ss_pred chhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHhh
Q 014654 265 SRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMD 341 (421)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d 341 (421)
.+.++.++++++++ .++......... +.....++....|.|.+++ ..|++... .......++.+++.++.|+++|
T Consensus 234 ~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 311 (490)
T PRK10642 234 QDGPKVSFKEIATK-HWRSLLTCIGLV-IATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSD 311 (490)
T ss_pred cccccCCHHHHHHH-hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112234455543 222222222222 2222234556667787775 45776554 4445567788899999999999
Q ss_pred ccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 342 KAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
|+|||+.+..+.+...++.+.+.......+ ......+.++.+++++.+ .+....+..|.+|++.||+
T Consensus 312 r~grr~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~g~~~~~~-~g~~~~~~~~~~p~~~Rg~ 378 (490)
T PRK10642 312 RFGRRPFVILGSVALFVLAIPAFILINSNV------------IGLIFAGLLMLAVILNCF-TGVMASTLPAMFPTHIRYS 378 (490)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHhCCC------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCccchH
Confidence 999999887776544333222111111110 112222223333333222 2334567789999999984
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=253.50 Aligned_cols=272 Identities=20% Similarity=0.202 Sum_probs=196.3
Q ss_pred hHHHHHHHHHHHHHHhhhhccccccchHHHHhhhC---CChhhHHHHHH---HHHHHHHHHHHHHHHhhhhhchHHHHHH
Q 014654 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLK---LTISEFSIFGS---LANVGAMVGAIASGQIAEYIGRKGSLMI 120 (421)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~s~~~~~~~~s---~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 120 (421)
+++..+....++.+.+.+|...++...|.+.++++ .+..+.+...+ ..+++..++++++|+++||+|||+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 34445566677888899999999999999999985 55555444444 4445555999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcchh--------hHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHH
Q 014654 121 AAVPNIIGWLIISFSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL 192 (421)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 192 (421)
+.++++++++++++++++. .+++.|+++|++.|...+...+++.|++|+++|+++.++.+.+...|..+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 58889999999999999999999999999999999999988888888777765
Q ss_pred hhc------------ccchHHHHHhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 014654 193 LGL------------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRS 260 (421)
Q Consensus 193 ~~~------------~l~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (421)
+.. ..+||+.|++.+++.++.......+||+|++..+ +
T Consensus 179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~-----------------------------~- 228 (432)
T PRK10406 179 VVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR-----------------------------A- 228 (432)
T ss_pred HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh-----------------------------h-
Confidence 431 2489999999888777665555567777542100 0
Q ss_pred HhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHH
Q 014654 261 VASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNT 337 (421)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g 337 (421)
+ ++..+++++++++..+...+.. .......++....|.|.+++ ..|.+..+ .......++..++.++.|
T Consensus 229 -~----~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G 300 (432)
T PRK10406 229 -L----KEAGSLKGLWRNRRAFIMVLGF---TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIG 300 (432)
T ss_pred -h----cccccHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0011345566554333222221 11111223445566777665 46776655 444455666778888999
Q ss_pred HHhhccCChHHHHHhhHHH
Q 014654 338 WLMDKAGRRLLLLISSSGM 356 (421)
Q Consensus 338 ~l~d~~~~~~~~~~~~~~~ 356 (421)
+++||++||+.+..+.++.
T Consensus 301 ~l~Dr~grr~~~~~~~~~~ 319 (432)
T PRK10406 301 ALSDKIGRRTSMLCFGSLA 319 (432)
T ss_pred HHHHHcCchHHHHHHHHHH
Confidence 9999999999876655543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-32 Score=237.19 Aligned_cols=277 Identities=18% Similarity=0.211 Sum_probs=224.0
Q ss_pred HHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 014654 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (421)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 127 (421)
.+..++...++.|..+.+.......+|++++|+|+|..+.|+..|+|.++..++.++...+.||+.||++++..+.++.+
T Consensus 11 ~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~ 90 (394)
T COG2814 11 MWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90 (394)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 34555666777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHH
Q 014654 128 GWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLA 203 (421)
Q Consensus 128 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f 203 (421)
+++++++++||+.++++|++.|+..|..++...++..+..|+++|++++++...+..++.++|.+++.++ |||+.|
T Consensus 91 ~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F 170 (394)
T COG2814 91 SNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATF 170 (394)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888877776655 999999
Q ss_pred HhhhHHHHHHHh-hhcccc-CChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccch
Q 014654 204 VLGVLPCTLLIP-GLFFIP-ESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYW 281 (421)
Q Consensus 204 ~~~~~~~~~~~~-~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (421)
++.+.++++..+ .+..+| .+++ +++..+..+..++++++..
T Consensus 171 ~~ia~l~ll~~~~~~~~lP~~~~~-------------------------------------~~~~~~~~~~~~~l~~p~v 213 (394)
T COG2814 171 LAIAVLALLALLLLWKLLPPSEIS-------------------------------------GSLPGPLRTLLRLLRRPGV 213 (394)
T ss_pred HHHHHHHHHHHHHHHHhCCCccCC-------------------------------------CCCCcchhHHHHHhcCchH
Confidence 998888888766 455577 1110 1111222234556666655
Q ss_pred hHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHH
Q 014654 282 FPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (421)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 359 (421)
+..++...+.+..+ +....|..|.+.+..|++... +....++++.++|..++|++.|| +.|+.+.....+..+.
T Consensus 214 ~~~l~~t~l~~~g~---F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~ 289 (394)
T COG2814 214 LLGLLATFLFMTGH---FALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALA 289 (394)
T ss_pred HHHHHHHHHHHcch---hhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHH
Confidence 55444444443332 333445556666667887766 77888899999999999999999 8888888777777766
Q ss_pred HHHHHH
Q 014654 360 FFLVSV 365 (421)
Q Consensus 360 ~~~~~~ 365 (421)
++.+..
T Consensus 290 ~l~l~~ 295 (394)
T COG2814 290 LLALTF 295 (394)
T ss_pred HHHHHH
Confidence 666543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=249.53 Aligned_cols=348 Identities=19% Similarity=0.165 Sum_probs=236.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 014654 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (421)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 125 (421)
++++.....+.++.+.++++....++..|.+++++|++.++.+++.+++.++..+++++.|+++||+|||+++..+.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 87 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLF 87 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45566667778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c--h
Q 014654 126 IIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N--W 199 (421)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~--w 199 (421)
+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.++..+ + |
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w 167 (405)
T TIGR00891 88 SAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW 167 (405)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 999999999999999999999999999999999999999999999999999999999999999998887654 4 9
Q ss_pred HHHHHhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhcc
Q 014654 200 RVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKR 279 (421)
Q Consensus 200 ~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (421)
|+.|++.++..++..+....+||++++..+++++++..+..++....... .+...++.....+.. .+
T Consensus 168 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~--~~ 234 (405)
T TIGR00891 168 RALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHR-----------IANIVMTLAAAMVQS--AG 234 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchh-----------hhhhhhhhhHHhhhh--hh
Confidence 99998877666666666667788876543322221111111111100000 000000000001110 11
Q ss_pred chhHHHHHHHHHHHHhhhchHHHHHhHHHHH-hhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHH
Q 014654 280 YWFPLMIGIGLLVLQQLSGINGVLFYSSNIF-ANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGM 356 (421)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 356 (421)
..+......................+.|.++ ++.|++..+ .......++.+++.++.+++.||++||+.+..+....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~ 314 (405)
T TIGR00891 235 KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAG 314 (405)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHH
Confidence 1111111111111111111223333445554 356877655 5566678889999999999999999999887776554
Q ss_pred HHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 357 AASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
.+....+.. . .. .........++...+ ..+..++...++.|.+|++.||+
T Consensus 315 ~~~~~~~~~--~-~~-----------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 364 (405)
T TIGR00891 315 QLLIIPVFA--I-GA-----------NVAVLGLGLFFQQML-VQGIWGILPKHLGEYFPTDQRAA 364 (405)
T ss_pred HHHHHHHHH--h-CC-----------chHHHHHHHHHHHHH-HccchhhHHHHHhhhCCcchhHH
Confidence 332222111 1 10 011222222222222 23334566778999999999875
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=250.21 Aligned_cols=334 Identities=18% Similarity=0.136 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q 014654 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (421)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 128 (421)
+...+.+.++.+.++++.....+..|.+++++|+++.+.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~ 96 (426)
T PRK12307 17 KNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVG 96 (426)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 34456666777888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHH
Q 014654 129 WLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAV 204 (421)
Q Consensus 129 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~ 204 (421)
.++++++++++.++++|++.|++.+...+....++.|++|+++|+++.++...+..+|.++++.+...+ +||+.|+
T Consensus 97 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~ 176 (426)
T PRK12307 97 TGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFF 176 (426)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988776543 8999998
Q ss_pred hhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHH
Q 014654 205 LGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPL 284 (421)
Q Consensus 205 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (421)
+..+..++........||++++..++.+.+ ++ ..+...+.....++++++++..+..
T Consensus 177 i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (426)
T PRK12307 177 VGLLPVLLVIYIRARAPESKEWEEAKLSGK------------GK-----------HSQSAWSVFSLSMKGLFNRAQFPLT 233 (426)
T ss_pred HHHHHHHHHHHHHHHCCCChHHHHhhhhcc------------cc-----------ccccchhhhhHHHHHHHhhchHHHH
Confidence 865444443333333566654321110000 00 0000001112245666776655544
Q ss_pred HHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHH
Q 014654 285 MIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (421)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (421)
.......+. .+.....+..+.|.++++.|.++.. .......++.+++.++.+++.||++||+.+..+.+...+.++.
T Consensus 234 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 312 (426)
T PRK12307 234 LCVFIVLFS-IFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFP 312 (426)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 333222222 2222333455677777777886655 4456667889999999999999999999888777665554433
Q ss_pred HHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHH-hcccccchhhhccccCCCCCCCC
Q 014654 363 VSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF-SLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
+... ... .........++.++ ..+..++...++.|.+|++.||+
T Consensus 313 ~~~~---~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~ 357 (426)
T PRK12307 313 LFRI---PQD------------NYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGL 357 (426)
T ss_pred HHHH---ccc------------cHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhh
Confidence 3211 100 01111122222222 22334455677899999998875
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=248.74 Aligned_cols=291 Identities=14% Similarity=0.115 Sum_probs=210.5
Q ss_pred HHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 014654 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (421)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 127 (421)
.+....++.++.+.++++....+...|.+++|+|++.++.|++.+++.+++.+++++.|+++||+|||+++..+.+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 85 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI 85 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence 34555666667778888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhcc----------c
Q 014654 128 GWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF----------V 197 (421)
Q Consensus 128 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----------l 197 (421)
+++++++++|++.+++.|++.|++.+...+....++.|++|+++|++++++++.+..+|..+++++++. .
T Consensus 86 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 165 (412)
T TIGR02332 86 ASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALK 165 (412)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999998888643 3
Q ss_pred chHHHHHhhhHHHHHHH-hhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHh
Q 014654 198 NWRVLAVLGVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELK 276 (421)
Q Consensus 198 ~w~~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (421)
+||+.|++.++..++.. +.++++||+|+... ....++.+...+..+....+.+.. +...++++...+..+++++
T Consensus 166 gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 240 (412)
T TIGR02332 166 GWQWLFLLEGFPSVILGVMTWFWLDDSPDKAK-WLDEEDKKALKEMIDNDQLTLEQP----EGAFAHAAMPQRSMLREIF 240 (412)
T ss_pred chhHHHHHHHHHHHHHHHHHhhccCCCcccCC-CCCHHHHHHHHHHHHhcccccccc----ccccccccccHHHHHHHhc
Confidence 89999999877766554 45567788874210 001111111111111110000000 0000000111122334443
Q ss_pred hccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhc--CCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHH
Q 014654 277 RKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA--GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLL 348 (421)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 348 (421)
+ +. .+.....+++....+..+..|.|.++++. +++... .......++.+++.++.|+++||+++|+.
T Consensus 241 ~-~~----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~ 311 (412)
T TIGR02332 241 T-PA----IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH 311 (412)
T ss_pred C-hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence 2 22 22233333333344566778889998874 444443 55667788899999999999999997764
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=246.96 Aligned_cols=327 Identities=18% Similarity=0.224 Sum_probs=237.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 014654 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (421)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 125 (421)
++.|...++..+..+.++++....++..|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF 90 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 36667777888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHH
Q 014654 126 IIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRV 201 (421)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~ 201 (421)
.++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+ +||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 170 (406)
T PRK11551 91 GLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRH 170 (406)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998887544 8999
Q ss_pred HHHhhhHHHHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccc
Q 014654 202 LAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRY 280 (421)
Q Consensus 202 ~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (421)
.|++.++..++..+ ...++||+|++..++++.++. +...+..++++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~ 218 (406)
T PRK11551 171 IFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR--------------------------------APVLRALFGEGR 218 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh--------------------------------hhhHHHHhhhhh
Confidence 99887665554443 455678887643221111000 000011111111
Q ss_pred hhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHH
Q 014654 281 WFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAA 358 (421)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 358 (421)
.+.... .....+......+....+.|.++++.|.++.. .......++.+++.++.|++.||++||+.+..+.+...+
T Consensus 219 ~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 297 (406)
T PRK11551 219 ATATLL-LWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILA 297 (406)
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 111111 11111111222344556678888888887655 556667888999999999999999999988776655555
Q ss_pred HHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 359 SFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
+++.+... ++ ........++.+++. .+..+...++..|.+|++.||+
T Consensus 298 ~~~~~~~~---~~------------~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~ 344 (406)
T PRK11551 298 SLAALAAA---PS------------FAGMLLAGFAAGLFV-VGGQSVLYALAPLFYPTQVRGT 344 (406)
T ss_pred HHHHHHhc---Cc------------HHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcchhhhhh
Confidence 54433321 11 111122222222222 2335667789999999999885
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=252.50 Aligned_cols=356 Identities=13% Similarity=0.064 Sum_probs=243.4
Q ss_pred hHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q 014654 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (421)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 126 (421)
+++..+..++++.+...+|.+..+..+|.+.+|+|.+.++.+|+.+.|.+++.+++++.|+++||+|||++++.+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~ 82 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG 82 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34567788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccC-CCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHH
Q 014654 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRV 201 (421)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~ 201 (421)
++++++++++|++.++++|+++|+|.+...+.....+.+.+ |+++|+++.++......+|..+||.+++.+ +||+
T Consensus 83 ~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~ 162 (495)
T PRK14995 83 LASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGS 162 (495)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH
Confidence 99999999999999999999999999999988888787766 678999999999999999999999998777 8999
Q ss_pred HHHhhhHHHHHHHh-hhccccCChHHHHHcCCHHHHHHHHH---------HHhC-C-Cc-chHHHHHH-------H-HHH
Q 014654 202 LAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQ---------VLRG-F-DT-DISIEVNE-------I-KRS 260 (421)
Q Consensus 202 ~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~---------~~~~-~-~~-~~~~~~~~-------~-~~~ 260 (421)
.|++.....++.++ ..+++||+++.. +++.+....... .+.. . +. ........ . ...
T Consensus 163 ~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~ 240 (495)
T PRK14995 163 VFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI 240 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence 99998766665544 445567765311 111111111000 0000 0 00 00000000 0 000
Q ss_pred HhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHH
Q 014654 261 VASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNT 337 (421)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g 337 (421)
..+.+.+.+....++++++......+....... ......++.|.+++. .|+++.+ ....+..++..++.++.|
T Consensus 241 ~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g 316 (495)
T PRK14995 241 RTQLAASRPMIDMRLFTHRIILSGVVMAMTAMI----TLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAG 316 (495)
T ss_pred HHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111111122356666554433332222222 233445566666654 5887666 666777888999999999
Q ss_pred HHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCC
Q 014654 338 WLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELG 417 (421)
Q Consensus 338 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 417 (421)
++.||+|+|+.+..+.++..++.+++....... . .+......++.+++.+.. .+.......+..|++
T Consensus 317 ~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~-------~-----~~~~~~~~~l~G~g~g~~-~~~~~~~~~~~~~~~ 383 (495)
T PRK14995 317 ILVSRLGLRLVATGGMALSALSFYGLAMTDFST-------Q-----QWQAWGLMALLGFSAASA-LLASTSAIMAAAPPE 383 (495)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCC-------c-----hHHHHHHHHHHHHhHHHH-HHHHHHHHHhcCCHH
Confidence 999999999988888777766665544321100 1 111222333444444433 333455667788888
Q ss_pred CCCC
Q 014654 418 KPNQ 421 (421)
Q Consensus 418 ~rg~ 421 (421)
.+|+
T Consensus 384 ~~g~ 387 (495)
T PRK14995 384 KAAA 387 (495)
T ss_pred hcch
Confidence 7763
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-31 Score=239.73 Aligned_cols=302 Identities=13% Similarity=0.075 Sum_probs=200.5
Q ss_pred hccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHH
Q 014654 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMG 144 (421)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (421)
....+++.+|.+++|+|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+.....++++.+++.
T Consensus 6 ~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (368)
T TIGR00903 6 IWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLAC 85 (368)
T ss_pred HHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 33456788999999999999999999999999999999999999999999998766655554544333344799999999
Q ss_pred HHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHh-hhcc
Q 014654 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFF 219 (421)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~-~~~~ 219 (421)
|+++|++.+. .+.....+.|++|+++|++++++.+.+..+|..++++++..+ +||+.|++.+++.++..+ .+++
T Consensus 86 R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~ 164 (368)
T TIGR00903 86 QLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAA 164 (368)
T ss_pred HHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999986 455666679999999999999999999999999998888776 999999987666655444 5567
Q ss_pred ccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhch
Q 014654 220 IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299 (421)
Q Consensus 220 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (421)
+||+|++. ++.. + . ++....++++++++..+...+...+ .....
T Consensus 165 lp~~p~~~---~~~~--------------~----~-----------~~~~~~~~~ll~~~~~~~~~~~~~~----~~~~~ 208 (368)
T TIGR00903 165 LPALPFQA---AEGF--------------G----F-----------KDAVKEFGALAGRKDLWIIGAILGF----GVALF 208 (368)
T ss_pred cCCCCCCC---CCCc--------------c----h-----------HHHHHHHHHHHcChhHHHHHHHHHH----HHHHH
Confidence 89987531 0000 0 0 0001235677777665544433333 33345
Q ss_pred HHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCh---HHHHH-hhHHHHHHHHHHHHHHHhhccccC
Q 014654 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRR---LLLLI-SSSGMAASFFLVSVAFFLEGFVSE 375 (421)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 375 (421)
+.+..|.|.++++.|++... .....+..+.+.+..++++||.+|| +.... .....++++..+.. ..+
T Consensus 209 ~~~~~wlp~~L~~~g~s~~~--~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~---~~~---- 279 (368)
T TIGR00903 209 DNLAIWLEAALRPAGLEDIA--GDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF---ELN---- 279 (368)
T ss_pred HHHHHHHHHHHHHCCCChHH--HHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH---ccc----
Confidence 66678899999887876432 2222333334444457888887653 33222 22222222222221 000
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 376 DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
....+...++.. ++..+..+..+++.+|.+|++.|||
T Consensus 280 --------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~p~~~rgt 316 (368)
T TIGR00903 280 --------RLALFAFIGIAG-LLMLPAYAIIMDWIGKFCDKELHGK 316 (368)
T ss_pred --------cHHHHHHHHHHH-HhhhhhHHHHHHHHHHhcchhhcCc
Confidence 112222222222 2233334567789999999999986
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=231.00 Aligned_cols=345 Identities=18% Similarity=0.162 Sum_probs=244.9
Q ss_pred CchhHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHH
Q 014654 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123 (421)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 123 (421)
.++.++.+...+.+++...++.+...+...|.+.++.++|.+|.|.+.+.+.+.|.++..+.|.++||.+.|+.+.++++
T Consensus 23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi 102 (448)
T COG2271 23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH
Confidence 34556667777888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhh--ccc----
Q 014654 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG--LFV---- 197 (421)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~--~~l---- 197 (421)
+.++.+++++++++.+.+.+.-++.|...|.-.|.+...+..|+++++||+..++++++.++|..+.|++. +++
T Consensus 103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~ 182 (448)
T COG2271 103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG 182 (448)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888877 444
Q ss_pred chHHHHHhhhHHHHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHH-HHHHhhc-chhhhHHHHH
Q 014654 198 NWRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEI-KRSVASS-SRRTAIRFAE 274 (421)
Q Consensus 198 ~w~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~ 274 (421)
+||..|++.++++++..+ .++..+|+|+..-- .+.||. ++ +..+. +++.+.+ ....+.-.+.
T Consensus 183 ~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL-P~ie~~-------~~-------d~~e~~~~~~~~~~ls~~~i~~~Y 247 (448)
T COG2271 183 GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL-PPIEEY-------RG-------DPLEIYEEEKENEGLTAWQIFVKY 247 (448)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCHHHh-------hc-------CchhhhhhhccCCCccHHHHHHHH
Confidence 899999999888777655 55567888752100 001110 00 00011 1111111 1122334455
Q ss_pred HhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhhcc--CChHHH
Q 014654 275 LKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKA--GRRLLL 349 (421)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~ 349 (421)
++++|..|.+.+...+.+. .-+.+..|.|.++.+ .|++... .....+-+++++|++++||++||+ |||...
T Consensus 248 VL~Nk~iW~la~a~vfvYi----vR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~ 323 (448)
T COG2271 248 VLKNKLIWLLALANVFVYV----VRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM 323 (448)
T ss_pred HHcChHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH
Confidence 6666655544444444443 456777888877755 4776555 777788899999999999999997 455443
Q ss_pred H-HhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 350 L-ISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 350 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
. +..+...++++.+.. .+ +.+ ..+..++++. ..++-.|..-+.-....|+.|++.-||
T Consensus 324 ~~i~~~~i~~~~~~~w~---~~-----~~~-----~~l~~~~l~~-iGf~IyGPqmLiGl~a~e~~pK~AaGt 382 (448)
T COG2271 324 ALIFMLLITASLVLYWL---AP-----NGS-----YLLDAILLFI-IGFLIYGPQMLIGLAAAEFVPKKAAGT 382 (448)
T ss_pred HHHHHHHHHHHHHHHHc---CC-----Ccc-----HHHHHHHHHH-HHHHHhhHHHHHHHHHhccccHhhccc
Confidence 3 222333333222221 11 111 1122222221 222223444455577889999987664
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=294.93 Aligned_cols=358 Identities=37% Similarity=0.561 Sum_probs=273.3
Q ss_pred HHHHHHHhhhhccccccchHHHH--hhhCCC---------hhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHH
Q 014654 55 VALGPIQFGFTCGYSSPTQAEII--SDLKLT---------ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123 (421)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~i~--~~~~~s---------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 123 (421)
+.++.+..+++....+...+... .++..+ ..+.++..+...+|..+|+++.|.++||+|||+.+.++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 34555788888888777665544 222222 2347899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc---chhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---
Q 014654 124 PNIIGWLIISFSK---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--- 197 (421)
Q Consensus 124 ~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l--- 197 (421)
+..++.++.++++ +++.+.++|++.|++.|...+....++.|..|+++|++..++.+.+..+|..++..++...
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999 9999999999999999999999999999999999999999999999999988888776543
Q ss_pred -c---hHHHHHhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHH
Q 014654 198 -N---WRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFA 273 (421)
Q Consensus 198 -~---w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (421)
+ ||..+.+.+++.++..+..+++||||+|+..+++.+|+++.+++.++.+...++. ++..+..++.+ +.+..++
T Consensus 165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~ 242 (451)
T PF00083_consen 165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEI-EEIKAEKKESQ-ESKASWR 242 (451)
T ss_pred cccccccccccccccccccccccccccccccceecccccccccccccccccccccccccc-ccccccccccc-ccceeee
Confidence 4 9999999999988888888899999999999999999999998866553222111 11111111111 1115677
Q ss_pred HHhhccc-hhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHh
Q 014654 274 ELKRKRY-WFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLIS 352 (421)
Q Consensus 274 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 352 (421)
++++++. +++......+.....+.+.+...+|.+.++++.+.+..........+...++.+++.++.||+|||++++.+
T Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~ 322 (451)
T PF00083_consen 243 DLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIG 322 (451)
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7777644 455666666666666677777788888888888876664445555677778888888999999999999999
Q ss_pred hHHHHHHHHHHHH-HHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 353 SSGMAASFFLVSV-AFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 353 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
...++++.+.++. ....... + .......+....++..+++.++.++.+.+.+|.+|++.|++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~ 385 (451)
T PF00083_consen 323 LLLMAICSLILGIIFFLGVSS---S----SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRST 385 (451)
T ss_pred ccccccccccccccccccccc---c----cccccccceeeeecccccccccccccccccccccccccccc
Confidence 8888887777751 1111110 0 01123334444555667788889999999999999999975
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=221.71 Aligned_cols=357 Identities=17% Similarity=0.167 Sum_probs=263.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 014654 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (421)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 125 (421)
+.++...+.+.++...+.+..-...-+.|.+.+.+|.+..+..++......|..+++..+|.++|++|||+.+.+.....
T Consensus 74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t 153 (528)
T KOG0253|consen 74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT 153 (528)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence 45556666677777666666666666777789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHH
Q 014654 126 IIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRV 201 (421)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~ 201 (421)
.+..++.+.++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|...+-+. ..+.+|.+....++... ||||
T Consensus 154 ~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~ 231 (528)
T KOG0253|consen 154 GVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRY 231 (528)
T ss_pred HHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999 888899999999999998877766 88888988887776443 9999
Q ss_pred HHHhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcch--------------HHHHHHHHHHHhhcchh
Q 014654 202 LAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI--------------SIEVNEIKRSVASSSRR 267 (421)
Q Consensus 202 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 267 (421)
.......+..+.+...+++||+|+++..+++.+++.+.++++...|... +++..+..+......++
T Consensus 232 ~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke 311 (528)
T KOG0253|consen 232 LLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKE 311 (528)
T ss_pred HHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccc
Confidence 8888887777778888889999999999999999999999987766421 11111112222222344
Q ss_pred hhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcC--------------------CCch-h-HHHHHH
Q 014654 268 TAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAG--------------------ISSS-N-VATFGL 325 (421)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------------------~~~~-~-~~~~~~ 325 (421)
.+.....++..+.++..++.....+...+. ++........+++.-. .+.. . .-..+.
T Consensus 312 ~rg~~~nLlsp~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllit 390 (528)
T KOG0253|consen 312 VRGGTTNLLSPKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLIT 390 (528)
T ss_pred cccchHhhcChHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHH
Confidence 455666777666666555544444443333 3333333333333210 1111 1 345566
Q ss_pred HHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccc
Q 014654 326 GVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAI 405 (421)
Q Consensus 326 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (421)
.+....|.++.++++||+|||+.+..++++++++.+++......+ ...+..+..-++.+ +...+
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn---------------~~tvllf~arafis-g~fqv 454 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN---------------AYTVLLFTARAFIS-GAFQV 454 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc---------------hhHHHHHHHHHHHh-chheE
Confidence 788899999999999999999999999998888777665432211 11222233333333 33456
Q ss_pred hhhhccccCCCCCCCC
Q 014654 406 PWVIMSEASELGKPNQ 421 (421)
Q Consensus 406 ~~~~~~e~~p~~~rg~ 421 (421)
.|+|..|++|++.|++
T Consensus 455 aYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 455 AYVYTPEVYPTAVRAT 470 (528)
T ss_pred EEEecCcccchhhhhc
Confidence 6999999999999985
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-31 Score=249.53 Aligned_cols=291 Identities=18% Similarity=0.103 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 014654 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (421)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 127 (421)
.+.+..+..++++...++....++..|.+.+|+|++..+.|++.+++.+++.+++++.|+++||+|||+++..+.+++++
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 106 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI 106 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence 44455666667777788889999999999999999999999999999999999999999999999999999988888877
Q ss_pred HHHHHHh-----hcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----
Q 014654 128 GWLIISF-----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----- 197 (421)
Q Consensus 128 ~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----- 197 (421)
+.+..++ +++++.+++.|+++|++.+...+...+++.|++|+++|++++++++.+.++|..++++++.++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~ 186 (467)
T PRK09556 107 CMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF 186 (467)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence 7766655 589999999999999999999999999999999999999999999999999999988776432
Q ss_pred --chHHHHHhhhHHHHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhH-HHH
Q 014654 198 --NWRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAI-RFA 273 (421)
Q Consensus 198 --~w~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 273 (421)
+||..|.+.+++.++..+ .+++.+++|+.... .+.++. ..... . .+ ++..+.++..... ..+
T Consensus 187 ~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~-~~~~~~------~~~~~-~--~~----~~~~~~~~~~~~~~~~~ 252 (467)
T PRK09556 187 DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGW-GKAEEI------FGEPI-S--EE----DKETESTDMTKWQIFVE 252 (467)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCC-CChhhc------ccCcc-c--hh----hhccccccCcHHHHHHH
Confidence 588888887666655544 44455666642110 011110 00000 0 00 0000000000011 112
Q ss_pred HHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHH
Q 014654 274 ELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLL 350 (421)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 350 (421)
..++++..+...+. .++..........|.|.+++ +.|++..+ .......++.+++.++.|+++||++||+.+.
T Consensus 253 ~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~ 328 (467)
T PRK09556 253 YVLKNPVIWLLCFA----NIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALV 328 (467)
T ss_pred HHHcChHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence 24555444433322 22222224456677887765 46887655 5555667889999999999999999988766
Q ss_pred HhhHHH
Q 014654 351 ISSSGM 356 (421)
Q Consensus 351 ~~~~~~ 356 (421)
......
T Consensus 329 ~~~~~~ 334 (467)
T PRK09556 329 ACIALA 334 (467)
T ss_pred HHHHHH
Confidence 544433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-30 Score=239.32 Aligned_cols=327 Identities=17% Similarity=0.155 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHHhhhhccccccchHH-HHhhh--CCChhhHHHHH-----HHHHHHHHHHHHHHHHhhhhhchHHHHHHH
Q 014654 50 FCVLVVALGPIQFGFTCGYSSPTQAE-IISDL--KLTISEFSIFG-----SLANVGAMVGAIASGQIAEYIGRKGSLMIA 121 (421)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~s~~~~~~~~-----s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 121 (421)
.......++.+.+++|...++...|. +.+++ +.++. .+++. ++.+++..+++++.|+++||+|||+++..+
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~ 100 (438)
T PRK09952 22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLT 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHH
Confidence 34556667888899999888877764 45555 67766 45543 345566789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcchh--------hHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHh
Q 014654 122 AVPNIIGWLIISFSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193 (421)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 193 (421)
.++++++++++++++++. .++++|+++|++.|..++....++.|++|+++|++..+..+.+..+|..++..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~ 180 (438)
T PRK09952 101 VWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGL 180 (438)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 588899999999999999999999999999999999999999999998887654
Q ss_pred hc------------ccchHHHHHhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 014654 194 GL------------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSV 261 (421)
Q Consensus 194 ~~------------~l~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (421)
.. ..+||+.|++.++..++........||+|++..++++.++.
T Consensus 181 ~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~------------------------- 235 (438)
T PRK09952 181 VSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA------------------------- 235 (438)
T ss_pred HHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc-------------------------
Confidence 32 24899999988777665555555678887653221110000
Q ss_pred hhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHH
Q 014654 262 ASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTW 338 (421)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~ 338 (421)
++ +....+.+++++..+..... .. +......+....|.+.+.+ ..|.+... ......++..+++.++.|+
T Consensus 236 ---~~-~~~~~~~l~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~ 308 (438)
T PRK09952 236 ---KK-RIPVIEALLRHPGAFLKIIA--LR-LCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAW 308 (438)
T ss_pred ---cc-cCCHHHHHHHchHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00011223333322222111 11 1111123344455565553 45776554 2333456677888899999
Q ss_pred HhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCC
Q 014654 339 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGK 418 (421)
Q Consensus 339 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 418 (421)
++||++||+.+..+.+...++.+.+.......+ .....+...++..++++.. .+..++++.|.+|++.
T Consensus 309 l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~~p~~~ 376 (438)
T PRK09952 309 LADRFGRRRVYITGALIGTLSAFPFFMALEAQS-----------IFWIVFFSIMLANIAHDMV-VCVQQPMFTEMFGASY 376 (438)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCcch
Confidence 999999999887776655444332222111110 1112222222223333222 4456789999999999
Q ss_pred CCC
Q 014654 419 PNQ 421 (421)
Q Consensus 419 rg~ 421 (421)
|++
T Consensus 377 r~t 379 (438)
T PRK09952 377 RYS 379 (438)
T ss_pred hHH
Confidence 863
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-30 Score=237.07 Aligned_cols=265 Identities=14% Similarity=0.137 Sum_probs=196.1
Q ss_pred HHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHH
Q 014654 52 VLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI 131 (421)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 131 (421)
.+.+.++.+..........+.+|.+.+++|.|+++.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++.
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 90 (390)
T PRK03545 11 VVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVL 90 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 33334443444344445566789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhh
Q 014654 132 ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGV 207 (421)
Q Consensus 132 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~ 207 (421)
+++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++.+ +||+.|++.+
T Consensus 91 ~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~ 170 (390)
T PRK03545 91 SALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIG 170 (390)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998888654 9999999987
Q ss_pred HHHHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHH
Q 014654 208 LPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMI 286 (421)
Q Consensus 208 ~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (421)
+..++..+ ...++||+|+. + ++...+.++.++++..+....
T Consensus 171 ~~~~l~~~~~~~~~~~~~~~-----~---------------------------------~~~~~~~~~~~~~~~~~~~~~ 212 (390)
T PRK03545 171 GGALITLLLLIKLLPLLPSE-----H---------------------------------SGSLKSLPLLFRRPALVSLYL 212 (390)
T ss_pred HHHHHHHHHHHHhCCCCCCC-----C---------------------------------cchHHHHHHHHhCcHHHHHHH
Confidence 77666544 33445665320 0 000112345566655443333
Q ss_pred HHHHHHHHhhhchHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHH
Q 014654 287 GIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (421)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 359 (421)
...+.... ......+.+.+.+ ..|.+... ......+++.++++++.+++.||+++|... .+..+..++
T Consensus 213 ~~~~~~~~----~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~ 283 (390)
T PRK03545 213 LTVVVVTA----HFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVC 283 (390)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHH
Confidence 22222221 1222233444444 45776654 555667788999999999999999987653 444433333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-30 Score=239.98 Aligned_cols=353 Identities=19% Similarity=0.188 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 014654 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (421)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 127 (421)
.+.......+..+..+++.....+..|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+.+..+.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 94 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSV 94 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444555556677777777778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHH
Q 014654 128 GWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLA 203 (421)
Q Consensus 128 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f 203 (421)
+.++..++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|..+++.+++.+ +|++.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~ 174 (398)
T TIGR00895 95 FTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLF 174 (398)
T ss_pred HHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeeh
Confidence 9999999999999999999999999999999999999999999999999999999999999998888655 899999
Q ss_pred HhhhHHHH-HHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchh
Q 014654 204 VLGVLPCT-LLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWF 282 (421)
Q Consensus 204 ~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (421)
++.++..+ ...+...++||++++..++ +.++..+..++..........+ +..+ .+.+++..+...+.+++++..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~ 250 (398)
T TIGR00895 175 YVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--ALPE-QKATQGTKRSVFKALFQGKTAR 250 (398)
T ss_pred hhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--cccc-cccccchhhHHHHHHhcchhHH
Confidence 88754444 4444566788887765544 3333333222221111000000 0000 0000111122233344333333
Q ss_pred HHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHH
Q 014654 283 PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360 (421)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 360 (421)
...... ...+...........+.|.+.++.|.+... .......++.+++.++.+++.||+++|+... +..+..+..
T Consensus 251 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~ 328 (398)
T TIGR00895 251 ITVLLW-LLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFA 328 (398)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHH
Confidence 322222 222222233455566778777778887655 5566778889999999999999999984433 333333332
Q ss_pred HHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
.++.. ...+ ........++.+++.+.. .+...++..|.+|++.||+
T Consensus 329 ~~~~~--~~~~------------~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~ 374 (398)
T TIGR00895 329 VLVGS--TLFS------------PTLLLLLGAIAGFFVNGG-QSGLYALMALFYPTAIRAT 374 (398)
T ss_pred HHHHH--HhhC------------HHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCHHHHHH
Confidence 22221 1111 122233333344444332 5567889999999998863
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=236.74 Aligned_cols=323 Identities=20% Similarity=0.260 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHH-HHHHH-----HHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q 014654 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIF-GSLAN-----VGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (421)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~-~s~~~-----~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 124 (421)
....+.++.+.+.+|....+...|.+.+|++.++.+.+.. .+... ++..+++++.|+++||+|||+.++.+.++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 5667777889999999999999999999999988776543 33322 22346889999999999999999999999
Q ss_pred HHHHHHHHHhhcchhh--------HHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhcc
Q 014654 125 NIIGWLIISFSKDSSF--------LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF 196 (421)
Q Consensus 125 ~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 196 (421)
+++++++++++++++. ++++|+++|++.+...+....++.|++|+++|++++++......+|..+++.++..
T Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~ 175 (434)
T PRK15075 96 MASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYL 175 (434)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999874 68899999999999999889999999999999999999888777766665554432
Q ss_pred ------------cchHHHHHhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhc
Q 014654 197 ------------VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASS 264 (421)
Q Consensus 197 ------------l~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (421)
.+||+.|++..+...+........||++++..++ +
T Consensus 176 l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~-------------------------------~-- 222 (434)
T PRK15075 176 LNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK-------------------------------H-- 222 (434)
T ss_pred HHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh-------------------------------h--
Confidence 3899999876543322222222234432210000 0
Q ss_pred chhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhh
Q 014654 265 SRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMD 341 (421)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d 341 (421)
+.+.+..++...+++ +.........+......+.+..|.|.++++ .|++..+ .......++.+++.++.|+++|
T Consensus 223 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~D 299 (434)
T PRK15075 223 RPSMREIFRSLAANW---RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSD 299 (434)
T ss_pred ccccccHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001112222221 111111222222233355667788888875 5887655 4555667888999999999999
Q ss_pred ccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 342 KAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
|++||+.+..+.....+.... ......... . . ........+..++++ ...+..+.+..|.+|++.||+
T Consensus 300 r~g~r~~~~~~~~~~~~~~~~-~~~~~~~~~-----~---~--~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p~~~rg~ 367 (434)
T PRK15075 300 RIGRRPVLIAFTVLAILTAYP-ALSWLVAAP-----S---F--ARMLAVELWLSFLYG-SYNGAMVVALTEVMPAEVRTA 367 (434)
T ss_pred HhcchHHHHHHHHHHHHHHHH-HHHHHHcCC-----c---h--HHHHHHHHHHHHHHH-HHHhhHHHHHHHHCCCCccch
Confidence 999999877654443222111 111100100 0 0 111111122222332 223445678899999999985
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=236.20 Aligned_cols=361 Identities=17% Similarity=0.164 Sum_probs=234.0
Q ss_pred hHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q 014654 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (421)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 126 (421)
..+.....+.++.+.++++.....+..|.+.+++|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 96 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 34445566667778888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHH
Q 014654 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (421)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~ 202 (421)
++.++.+++++++.+++.|++.|++.+...+....++.|++|+++|+++.++...+..+|..+++.+++.+ +||+.
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~ 176 (496)
T PRK03893 97 VGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRAL 176 (496)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998887655 89999
Q ss_pred HHhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHH------HHHHhhcchhhh-------
Q 014654 203 AVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEI------KRSVASSSRRTA------- 269 (421)
Q Consensus 203 f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~------- 269 (421)
|++.++..++.++....+||++++..++++.++..+..+.....+.......... ............
T Consensus 177 f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (496)
T PRK03893 177 FFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGL 256 (496)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Confidence 9886655555444555678776543322211111111111000000000000000 000000000000
Q ss_pred ---HHHHH--HhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHhh
Q 014654 270 ---IRFAE--LKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMD 341 (421)
Q Consensus 270 ---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d 341 (421)
..+.. .......++.........+..+........+.|.+++ +.|++..+ .......++.+++.++.|+++|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~d 336 (496)
T PRK03893 257 LCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGD 336 (496)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0001111111111222222211112234456777774 67887655 5666778889999999999999
Q ss_pred ccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 342 KAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
|++||+.+..+..+..+..+.+... .. ...+..... .....+.+.+..++...++.|.+|++.||+
T Consensus 337 r~g~~~~~~~~~~~~~~~~~~~~~~---~~----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 402 (496)
T PRK03893 337 WLGTRKAYVCSLLISQLLIIPVFAI---GG----------ANVWVLGLL-LFFQQMLGQGISGLLPKLIGGYFDTEQRAA 402 (496)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhhc---cc----------cHHHHHHHH-HHHHHHHhcccchhhHHHHHhhCCHHHhhc
Confidence 9999998877765555443332211 00 011111111 111222233445566678899999998875
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=237.78 Aligned_cols=275 Identities=15% Similarity=0.112 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Q 014654 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (421)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 129 (421)
.......++.+...++...++..+|.+.+++|+|.++.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~ 102 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIIN 102 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHH
Confidence 34444555666666777777888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHh
Q 014654 130 LIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVL 205 (421)
Q Consensus 130 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~ 205 (421)
++++++++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+ +||+.|++
T Consensus 103 ~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~ 182 (434)
T PRK11663 103 ILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMI 182 (434)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998877655 99999998
Q ss_pred hhHHHHHHH-hhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHH-HHHhhccchhH
Q 014654 206 GVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRF-AELKRKRYWFP 283 (421)
Q Consensus 206 ~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 283 (421)
.++..++.. +..+++||+|++.......++..+ . .+..+..+.++.+.+..+ ...++++..+.
T Consensus 183 ~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (434)
T PRK11663 183 AGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHD-----------A----LELAQQQEGAGLSRKEILTKYVLLNPYIWL 247 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCHhhcCCCCccccccc-----------c----cccchhccccCCChhhhHHHHHhcChHHHH
Confidence 777655443 344567887653210000000000 0 000000000000011111 12334443333
Q ss_pred HHHHHHHHHHHhhhchHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHhhcc
Q 014654 284 LMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKA 343 (421)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~ 343 (421)
....... .......+..|.|.+++ +.|++..+ .......++.++++++.|+++||+
T Consensus 248 ~~~~~~~----~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~ 306 (434)
T PRK11663 248 LSFSYVL----VYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL 306 (434)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 3222222 22223455567777774 46887655 556667888999999999999998
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-30 Score=235.37 Aligned_cols=305 Identities=14% Similarity=0.068 Sum_probs=214.0
Q ss_pred cccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHH
Q 014654 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRL 146 (421)
Q Consensus 67 ~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 146 (421)
...++..|.+.+++|+|.++.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.++++|+
T Consensus 20 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (377)
T TIGR00890 20 YTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYG 99 (377)
T ss_pred hhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhh-hcccc
Q 014654 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIP 221 (421)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~-~~~~~ 221 (421)
+.|++.+...+.....+.+++| ++|+++.++...+..+|..+++.+...+ +||+.|++.++..++..+. .++++
T Consensus 100 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 178 (377)
T TIGR00890 100 LASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIG 178 (377)
T ss_pred HHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhee
Confidence 9999999888888888899987 6899999999999999887654443332 8999999988776666554 34455
Q ss_pred CChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHH
Q 014654 222 ESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGING 301 (421)
Q Consensus 222 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (421)
++|+.. .+++ ++.++++...++.++++..+............ ...
T Consensus 179 ~~~~~~-~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 223 (377)
T TIGR00890 179 YPPGQL-IKTN------------------------------IEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVS----GLL 223 (377)
T ss_pred cCchhc-cccC------------------------------cccchhhhhHHHHHcCccHHHHHHHHHHHhHH----HHH
Confidence 443210 0000 00001112234455555544333322222221 222
Q ss_pred HHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcch
Q 014654 302 VLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRF 379 (421)
Q Consensus 302 ~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (421)
...+.+.+.++.+.++.+ .......++.++++++.+++.||++||+.+..+.....++.+.+......
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~---------- 293 (377)
T TIGR00890 224 LIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPML---------- 293 (377)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccc----------
Confidence 223344455667776544 55667788899999999999999999999888887777766555432100
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 380 YSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
..........+...+++. ..++...+..|.+|++.|++
T Consensus 294 ---~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~~~~~~ 331 (377)
T TIGR00890 294 ---NDVLFLATVALVFFTWGG-TISLFPSLVSDIFGPANSAA 331 (377)
T ss_pred ---hhHHHHHHHHHHHHHhcc-chhccHHHHHHHhhhhhhhh
Confidence 011111222222333322 23445678899999999875
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=226.68 Aligned_cols=258 Identities=17% Similarity=0.168 Sum_probs=190.6
Q ss_pred HHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 014654 56 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135 (421)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 135 (421)
.++.+..........+.+|.+.+++|+++++.++..+++.++..+++++.|+++||+|||+++..+.++.+++.++++++
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~ 105 (394)
T PRK10213 26 AFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA 105 (394)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333345567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHH
Q 014654 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCT 211 (421)
Q Consensus 136 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~ 211 (421)
++++.+++.|+++|++.+...+...+++.|++|+++|+++.++...+.++|..++|.+++.+ +||+.|++.++..+
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~ 185 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGV 185 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888765 99999998776665
Q ss_pred HHHhh-hccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHH
Q 014654 212 LLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGL 290 (421)
Q Consensus 212 ~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (421)
+..+. ....||.|+. + ++.....+..++++..+...+...+
T Consensus 186 ~~~l~~~~~~p~~~~~-----~---------------------------------~~~~~~~~~~l~~~~~~~~~~~~~~ 227 (394)
T PRK10213 186 LCIFWIIKSLPSLPGE-----P---------------------------------SHQKQNTFRLLQRPGVMAGMIAIFM 227 (394)
T ss_pred HHHHHHHHHCCCCCcc-----c---------------------------------ccchhHHHHHhcCHHHHHHHHHHHH
Confidence 54433 2335664320 0 0000112344555444433332222
Q ss_pred HHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHH
Q 014654 291 LVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSG 355 (421)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 355 (421)
..... .....+..|.+.++.|+++.. ......+++.+++.++.+++.||.+ |+.+..+..+
T Consensus 228 ~~~~~---~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~ 290 (394)
T PRK10213 228 SFAGQ---FAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLV 290 (394)
T ss_pred HHHHH---HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHH
Confidence 22211 112233346666777887665 5566677889999999999999954 4443333333
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=226.61 Aligned_cols=269 Identities=19% Similarity=0.210 Sum_probs=207.2
Q ss_pred HHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchh
Q 014654 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS 139 (421)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 139 (421)
+....+.....+..|.+.+++|.++++.+++.+++.++..+++++.|+++||+|||+.+..+.++.+++.+.+.++++++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 94 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIE 94 (385)
T ss_pred HHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH
Confidence 44456777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHh
Q 014654 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (421)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~ 215 (421)
.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.+ +||+.|++.++..++..+
T Consensus 95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (385)
T TIGR00710 95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSA 174 (385)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888765 899999887766655544
Q ss_pred -hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHH
Q 014654 216 -GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQ 294 (421)
Q Consensus 216 -~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (421)
..++.||+++.. ++ ++.++....+++.++++..+...+...+...
T Consensus 175 ~~~~~~~~~~~~~---~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 220 (385)
T TIGR00710 175 LIFFILPETLPYE---AR------------------------------IQISTYFETFLLLLKSKMFWGYALIYGASFG- 220 (385)
T ss_pred HHHHhCCCCCCCc---cc------------------------------CCHHHHHHHHHHHHcCchhHHHHHHHHHHHH-
Confidence 344566653210 00 0000112234455566554443333222222
Q ss_pred hhhchHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHH
Q 014654 295 QLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (421)
.......+.|.+++ +.|.++.. .......++.+++.++.+++.||+++|+.+..+.....++.+++..
T Consensus 221 ---~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (385)
T TIGR00710 221 ---GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEI 291 (385)
T ss_pred ---HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 12334445565554 56777655 5556667888999999999999999999888887777666655544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=229.14 Aligned_cols=275 Identities=15% Similarity=0.110 Sum_probs=209.0
Q ss_pred chhHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q 014654 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (421)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 124 (421)
..+.+..+.+.++..++..++...+..+.+.+++.+|++++..|++.+.+.+++.+++|++|+++|||.||+++.+|..+
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i 107 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI 107 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence 34556667777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----ch
Q 014654 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NW 199 (421)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~w 199 (421)
+.++.+.+++++.||+++++|.+.|+|.+...|+++++++|.+|.++|++++++++.+..+|..+|.+++..+ .|
T Consensus 108 W~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W 187 (493)
T KOG1330|consen 108 WTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW 187 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888776 59
Q ss_pred HHHHHhhhHHHHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhc
Q 014654 200 RVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 278 (421)
Q Consensus 200 ~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (421)
||.|+..+++.++..+ .+++.+|+++. ..++. ++++ ....+.....++.+.+.++
T Consensus 188 r~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~-------~~~~------------~~~~~~ts~~kDl~~l~~~ 243 (493)
T KOG1330|consen 188 RWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEV-------DGEN------------KMVKPFTSVWKDLKVLAKI 243 (493)
T ss_pred EEEEEeehHHHHHHHHHHHhhccCcccc-----ccccc-------ccCC------------cCCCCccchHHHHHHHHcc
Confidence 9999999888887766 45556665431 00100 0000 0001111222334444444
Q ss_pred cchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhcc
Q 014654 279 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKA 343 (421)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~ 343 (421)
+......+......+...+..+..+.+.++..+-.|.+... ....+..+++.+|.+++|.++||+
T Consensus 244 ~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~ 310 (493)
T KOG1330|consen 244 KVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKL 310 (493)
T ss_pred CceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHH
Confidence 44444444444444443333333444444444444544333 566677788889999999999984
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-29 Score=228.47 Aligned_cols=271 Identities=14% Similarity=0.150 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q 014654 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (421)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 128 (421)
|.+....+.+.+..... ...++.+|.+++|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~ 87 (393)
T PRK09705 9 FMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVG 87 (393)
T ss_pred HHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHH
Confidence 44444444443333322 56778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHH
Q 014654 129 WLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLA 203 (421)
Q Consensus 129 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~w~~~f 203 (421)
.+.++++++++.++++|+++|++.+...+....++.+++| ++|+++++++..+...|..+++.++..+ +||+.+
T Consensus 88 ~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~ 166 (393)
T PRK09705 88 ALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTL 166 (393)
T ss_pred HHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999997 8899999999888777777777666543 799887
Q ss_pred HhhhHHHHHHHhhhccc-cCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchh
Q 014654 204 VLGVLPCTLLIPGLFFI-PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWF 282 (421)
Q Consensus 204 ~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (421)
.+.++..++.++.++.. ++.|+ + + ++++ ....+.++++..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~-----~--~---------------------------~~~~----~~~~~~l~~~~~~ 208 (393)
T PRK09705 167 AWWALPAVVALFAWWWQSAREVA-----S--S---------------------------HKTT----TTPVRVVFTPRAW 208 (393)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc-----c--c---------------------------cCCC----cCCcccccCHhHH
Confidence 76555444433333222 22211 0 0 0000 0011222333222
Q ss_pred HHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHH
Q 014654 283 PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360 (421)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 360 (421)
...+... .....+.....+.|.++++.|.+..+ ....+.+++.++++++.+++.||++||+....+..+..++.
T Consensus 209 ~l~~~~~----~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 209 TLGVYFG----LINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 2222121 12223445666777777778887655 66777889999999999999999999998888776666665
Q ss_pred HHH
Q 014654 361 FLV 363 (421)
Q Consensus 361 ~~~ 363 (421)
+++
T Consensus 285 ~~~ 287 (393)
T PRK09705 285 CGF 287 (393)
T ss_pred HHH
Confidence 544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-28 Score=229.48 Aligned_cols=255 Identities=15% Similarity=0.153 Sum_probs=177.5
Q ss_pred HhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhh
Q 014654 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF 140 (421)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (421)
...+......+..|.+.+++|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.
T Consensus 47 ~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~ 126 (476)
T PLN00028 47 TCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATG 126 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 33344445667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHH----Hhhc---------ccchHHHHHhhh
Q 014654 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY----LLGL---------FVNWRVLAVLGV 207 (421)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~----~~~~---------~l~w~~~f~~~~ 207 (421)
++++|++.|++.+... ....++.|++|+++|+++.++......+|..+++ .+.. ..+||+.|++.+
T Consensus 127 l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g 205 (476)
T PLN00028 127 FIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPG 205 (476)
T ss_pred HHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence 9999999999887654 4566889999999999999998766666655543 3321 137999999988
Q ss_pred HHHHHHHhhhccccC-ChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHH
Q 014654 208 LPCTLLIPGLFFIPE-SPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMI 286 (421)
Q Consensus 208 ~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (421)
++.++..+..+++++ .|+ ++.++.. +..+.++.+....+++.++++..+...+
T Consensus 206 ~l~l~~~l~~~~~~~~~p~-----~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (476)
T PLN00028 206 LLHIIMGILVLTLGQDLPD-----GNYRELK---------------------KSGTMPKDSFSKVLRYGVTNYRTWILAL 259 (476)
T ss_pred HHHHHHHHHHHHHcCcCCC-----CchhhHH---------------------hcCccccccHHHHHHHHHcCchhHHHHH
Confidence 777766554444443 332 0000000 0000000111123444455544333332
Q ss_pred HHHHHHHHhhhchHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCCh
Q 014654 287 GIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRR 346 (421)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~ 346 (421)
....... .......+.|.++. +.|++... ....+..++.++++++.|+++||++||
T Consensus 260 ~~~~~~~----~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 260 TYGYSFG----VELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred HHHHHHH----HHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 2222211 12333445555554 45887655 556677899999999999999999865
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=226.15 Aligned_cols=270 Identities=15% Similarity=0.180 Sum_probs=202.1
Q ss_pred HHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH
Q 014654 54 VVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133 (421)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 133 (421)
...++.+..+.......+.+|.+++|+|.+.++.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~ 86 (382)
T PRK10091 7 SLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT 86 (382)
T ss_pred HHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 33445566667777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHH
Q 014654 134 FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLP 209 (421)
Q Consensus 134 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~ 209 (421)
++++++.+++.|++.|++.+...+....++.|++++++|++++++...+..+|..+++.+++.+ +||+.|++.++.
T Consensus 87 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~ 166 (382)
T PRK10091 87 LSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVF 166 (382)
T ss_pred HhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHH
Confidence 9999999999999999999998888888999999999999999999999999998888877655 899999998776
Q ss_pred HHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHH
Q 014654 210 CTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (421)
Q Consensus 210 ~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (421)
.++..+ ..+.+||.++ +.+. +.+..+ +.++++..+......
T Consensus 167 ~~~~~~~~~~~lp~~~~----~~~~---------------------------------~~~~~~-~~~~~~~~~~~~~~~ 208 (382)
T PRK10091 167 NIAVLASIYFWVPDIRD----EAKG---------------------------------GLREQF-HFLRSPAPWLIFAAT 208 (382)
T ss_pred HHHHHHHHHHhCCCCCc----cccc---------------------------------CHHHHH-HHhcChHHHHHHHHH
Confidence 655544 3445677532 0000 000011 122333222222211
Q ss_pred HHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHH
Q 014654 289 GLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (421)
.+. ....+....+..+++.+..|.++.. ......+++.+++.++.+++.||+++|+.+..+..+..++.+++.
T Consensus 209 ~~~---~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~ 283 (382)
T PRK10091 209 MFG---NAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLF 283 (382)
T ss_pred HHH---HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHH
Confidence 111 1111112223334444456887655 556677889999999999999999999988888777766655443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=230.78 Aligned_cols=323 Identities=21% Similarity=0.294 Sum_probs=227.9
Q ss_pred HHHHHhhhhccccccchH-HHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 014654 57 LGPIQFGFTCGYSSPTQA-EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135 (421)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 135 (421)
++.+...++.....+..| .+.+++|.+.++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 82 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence 445566667777888888 8999999999999999999999999999999999999999999999999999997777777
Q ss_pred cchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHH
Q 014654 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCT 211 (421)
Q Consensus 136 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~ 211 (421)
++++.+++.|++.|++.+...+...+++.|++|+++|+++.++......+|..++|.+++.+ +||+.|++.++..+
T Consensus 83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~ 162 (352)
T PF07690_consen 83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSL 162 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHH
T ss_pred hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhh
Confidence 88889999999999999999999999999999999999999999999999999999998777 79999999888877
Q ss_pred HHHhh-hccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHH
Q 014654 212 LLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGL 290 (421)
Q Consensus 212 ~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (421)
+..+. ..+++++++...++.+.++. ++.+++....++.+++++..+........
T Consensus 163 ~~~il~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (352)
T PF07690_consen 163 IAAILFILFLPEPPPPRERESPKESE-------------------------SKKPKPLKPGFKSLFKNPVLWILLIAFFL 217 (352)
T ss_dssp HHHHHHHCCC---STTTT--SSTTTT---------------------------HHHCCCH-CTHHHHHHCCHHHHHHHHH
T ss_pred hhhhhHhhhhhhcccccccccccccc-------------------------cccccccccccccccccchhhhhhhhhhH
Confidence 77653 34444443210000000000 00000011125556666555422222222
Q ss_pred HHHHhhhchHHHHHhHHHH-HhhcCCC-chh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHH
Q 014654 291 LVLQQLSGINGVLFYSSNI-FANAGIS-SSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (421)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (421)
..+. ......+.|.+ .+..|.+ ..+ .......+..+++.++.+++.||+++|+..........++.+.+...
T Consensus 218 ~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (352)
T PF07690_consen 218 FFFV----FSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLL 293 (352)
T ss_dssp HHHH----HHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHH----HHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 33455666665 4566777 344 44677788888889999999999999887776666665555554432
Q ss_pred HHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 367 FFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
.... .........++.+++.+.. .+....+..|..|++.||+
T Consensus 294 ~~~~------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~ 335 (352)
T PF07690_consen 294 PFSS------------SPVWLIIALFLIGFGFGIV-FPILFSLIQELVPPEYRGT 335 (352)
T ss_dssp HHHC------------HHHHHHHHHHHHHHHHHHH-CHHHHHHHHCCCHTCHHHH
T ss_pred HHhh------------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHH
Confidence 2221 1122333334444443332 6777889999999988763
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-29 Score=227.70 Aligned_cols=318 Identities=10% Similarity=0.017 Sum_probs=227.4
Q ss_pred HHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhc
Q 014654 57 LGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK 136 (421)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 136 (421)
.+.+...+..+...+.+|.+..+++.+..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 85 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVA 85 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556667777888999999999999999999999999999999999999999999999999999999888888877
Q ss_pred -----chhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhh
Q 014654 137 -----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGV 207 (421)
Q Consensus 137 -----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~ 207 (421)
+++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+ +||+.|++.+
T Consensus 86 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 165 (365)
T TIGR00900 86 LLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDA 165 (365)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988776 8999998877
Q ss_pred HHHHHHHhhhccc--cCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHH
Q 014654 208 LPCTLLIPGLFFI--PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285 (421)
Q Consensus 208 ~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (421)
+..++..+..+.+ ||+++ .+.++. ++ +..++....++.+++++..+...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~--------------~~----------~~~~~~~~~~~~~~~~~~~~~~~ 216 (365)
T TIGR00900 166 VGFAISALLIVSVRIPELAA-----SEIQAL--------------SN----------AVLRDTREGIKFVLKNPLLRTLL 216 (365)
T ss_pred HHHHHHHHHHHhcccccCCC-----cccccc--------------ch----------hHHHHHHhHHHHHHcCcHHHHHH
Confidence 6665554433333 33211 000000 00 00011122345566666555444
Q ss_pred HHHHHHHHHhhhchHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHH
Q 014654 286 IGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (421)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (421)
....+..... ......+.|.+.++ .|.++.+ .......++.+++.++.+++.||.+||+.+..+....++++..
T Consensus 217 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 293 (365)
T TIGR00900 217 LLALLFNLVF---APAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILV 293 (365)
T ss_pred HHHHHHHHHH---HHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 3333332221 11222455666654 5776655 5566678888999999999999999999888776666665555
Q ss_pred HHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 363 VSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
+..... ..+...+..++.+++.+.. .+...++..|..|++.||+
T Consensus 294 ~~~~~~--------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~ 337 (365)
T TIGR00900 294 VGLTPP--------------NFPLFLVLWFAIGVGYGPI-NVPQGTLLQRRVPAELLGR 337 (365)
T ss_pred HHhhch--------------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHH
Confidence 443210 0123333334444444332 5667788999999988763
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-28 Score=223.85 Aligned_cols=286 Identities=16% Similarity=0.153 Sum_probs=215.6
Q ss_pred chhHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q 014654 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (421)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 124 (421)
.++.++..+.+.+..+...++.+.+.|.+|.+.+++|.+.++.++..+.+.+++.+++++.|+++||+|||+++..+.++
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 87 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF 87 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 35666777777777788888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chH
Q 014654 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWR 200 (421)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~ 200 (421)
.+++.+.+.++++++.+++.|+++|++.+...+...+++.|++|+++|.+..++......+|..++|.+++.+ +||
T Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~ 167 (406)
T PRK15402 88 FILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWR 167 (406)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 9999999999999999999999999999988888899999999999999999998888888888888877654 899
Q ss_pred HHHHhhhHHHHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhcc
Q 014654 201 VLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKR 279 (421)
Q Consensus 201 ~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (421)
+.|++.++..++..+ ..+..||+++... + + .+.++....++.+++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~----------------------------~~~~~~~~~~~~~~~~~ 215 (406)
T PRK15402 168 GMFVLFAALAALSFFGLWRAMPETAGRVG---E-K----------------------------LSLKELGRDYKLVLKNR 215 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcccc---c-c----------------------------ccHHHHHHHHHHHHcCc
Confidence 999987776666554 3344676642100 0 0 00011122345566666
Q ss_pred chhHHHHHHHHHHHHhhhchHHHHHhHHHHH-hhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHH
Q 014654 280 YWFPLMIGIGLLVLQQLSGINGVLFYSSNIF-ANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGM 356 (421)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 356 (421)
..+...+...+.... ......+.|.++ ++.|.++.+ .......++.+++.++.+++.||+++|+.+..+.+..
T Consensus 216 ~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~ 291 (406)
T PRK15402 216 RFVAGALALGLVSLP----LLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPM 291 (406)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 544433332222221 122233345554 446777655 3344456678889999999999999999988887777
Q ss_pred HHHHHHHHHH
Q 014654 357 AASFFLVSVA 366 (421)
Q Consensus 357 ~~~~~~~~~~ 366 (421)
.++..++...
T Consensus 292 ~~g~~~~~~~ 301 (406)
T PRK15402 292 VAGLLLAALA 301 (406)
T ss_pred HHHHHHHHHH
Confidence 7776666543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=240.26 Aligned_cols=306 Identities=17% Similarity=0.214 Sum_probs=220.3
Q ss_pred HHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHH
Q 014654 52 VLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI 131 (421)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 131 (421)
...++++.+...++.+..++.+|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 44556677788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhh
Q 014654 132 ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGV 207 (421)
Q Consensus 132 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~ 207 (421)
++++++++.+++.|+++|++.+...+...+++.|++|+++|+++.+++.....+|..++|.+++.+ +||+.|++.+
T Consensus 84 ~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~ 163 (485)
T TIGR00711 84 CGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINV 163 (485)
T ss_pred HhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999888766 8999999877
Q ss_pred HHHHHHHh-hhccccCChHHHHHcCCHHHHHHHH--------H-HH-hCCCcch--H-HHHHH---------HHHHHhhc
Q 014654 208 LPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSL--------Q-VL-RGFDTDI--S-IEVNE---------IKRSVASS 264 (421)
Q Consensus 208 ~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~--------~-~~-~~~~~~~--~-~~~~~---------~~~~~~~~ 264 (421)
+..++..+ ..++.||+++. ++++.+.....+ . .. .+...+. . ..... .....+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (485)
T TIGR00711 164 PIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELT 241 (485)
T ss_pred HHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHc
Confidence 76665544 34445664331 111212111100 0 00 1111000 0 00000 00000111
Q ss_pred chhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhh
Q 014654 265 SRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMD 341 (421)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d 341 (421)
++ .+....++++++..+...+...+.... .....++.|.++++ .|.++.+ .......++.+++.++.|++.|
T Consensus 242 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~ 316 (485)
T TIGR00711 242 DD-NPLVDLRLFKYRNFTIGCVYMSLLGLG----LYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGD 316 (485)
T ss_pred CC-CCccCHHHHcCCChHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 111123455665555443333333332 33445566777665 5777655 5566678889999999999999
Q ss_pred ccCChHHHHHhhHHHHHHHHHHH
Q 014654 342 KAGRRLLLLISSSGMAASFFLVS 364 (421)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~ 364 (421)
|++||+.+..+..+.+++..++.
T Consensus 317 r~~~~~~~~~g~~~~~~~~~~~~ 339 (485)
T TIGR00711 317 KIDPRKLVTIGLILYAVGFYWRA 339 (485)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHh
Confidence 99999998888777777666554
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=232.48 Aligned_cols=334 Identities=18% Similarity=0.176 Sum_probs=222.8
Q ss_pred HhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhh
Q 014654 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF 140 (421)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (421)
...++...++...|.+.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (399)
T TIGR00893 5 INYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVS 84 (399)
T ss_pred HHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHH
Confidence 33456667778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhh
Q 014654 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (421)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~ 216 (421)
++++|++.|++.+...+....++.|++|+++|+++.++.+....+|..+++.+++.+ +||+.|++.++..++..+.
T Consensus 85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (399)
T TIGR00893 85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVL 164 (399)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888764 8999999887776665543
Q ss_pred -hccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHh
Q 014654 217 -LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQ 295 (421)
Q Consensus 217 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (421)
.++.||+|+... ..++++.....+.... +...+++++..+...++.++++..+...+...+..
T Consensus 165 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 228 (399)
T TIGR00893 165 WLKFIPDPPQKAK-WLTEEEKYIVVGGLLA------------EQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVN--- 228 (399)
T ss_pred hhheecCCCCccc-cCCHHHHhhcchhhcc------------ccccccccCCCccchHHHhcCHHHHHHHHHHHHHH---
Confidence 444566543110 0011110000000000 00001111122334556666654443333222222
Q ss_pred hhchHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHH-HHhhHHHHHHHHHHHHHHHhhc
Q 014654 296 LSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLL-LISSSGMAASFFLVSVAFFLEG 371 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 371 (421)
........+.|.+++ ..|.++.+ .......++.+++.++.+++.||++||+.. ........++.+...+......
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (399)
T TIGR00893 229 -IGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATN 307 (399)
T ss_pred -hHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhc
Confidence 224445556666654 45776554 556667888999999999999999998621 1111111122111111111111
Q ss_pred cccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 372 FVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
. ....... ..... ..++..+..+..+++..|.+|++.||+
T Consensus 308 ~--------~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~ 347 (399)
T TIGR00893 308 Y--------VNIPYAA-LALVA-LGFFGLGAGAIGWALISDNAPGNIAGL 347 (399)
T ss_pred c--------chhHHHH-HHHHH-HHHhchhhhhHHHHHHHhhcChhHHHH
Confidence 0 0011111 21122 222233357788899999999999874
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=236.07 Aligned_cols=336 Identities=19% Similarity=0.183 Sum_probs=238.8
Q ss_pred hhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 014654 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLF 142 (421)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 142 (421)
..+....++..+ .+.++.+.....+..+++++|..+|++++|.++||+|||++++.++++..++.+..++++|++.++
T Consensus 98 ~~~~~~~s~~~~--~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~ 175 (521)
T KOG0255|consen 98 DYGSSVYSIVSE--WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFL 175 (521)
T ss_pred cCCCCcccccch--hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 333344444333 456677888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc--chHHHHHhhhHHHHHHHhhhccc
Q 014654 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLLIPGLFFI 220 (421)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l--~w~~~f~~~~~~~~~~~~~~~~~ 220 (421)
+.|++.|++.++.......++.|++++++|+.+..+ ......+..+++..++++ +||+.+++..++.++.++.+++.
T Consensus 176 ~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~ 254 (521)
T KOG0255|consen 176 IFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLP 254 (521)
T ss_pred HHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999 555666666666655555 89999999999888887777777
Q ss_pred cCChHHHHHcCCHHHHHHHHHHHhCCC---cchHHHHHHH--HHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHh
Q 014654 221 PESPRWLAKMGMTEDFESSLQVLRGFD---TDISIEVNEI--KRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQ 295 (421)
Q Consensus 221 ~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (421)
||+|+|+..+++.+++.+.++++...| .+........ .+..+....+++..+.++++.+..+...+...+.++.
T Consensus 255 ~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~- 333 (521)
T KOG0255|consen 255 PESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFV- 333 (521)
T ss_pred CcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHH-
Confidence 899999999999999999998886544 1221111111 1111111222334577788776444444444443331
Q ss_pred hhchHHHHHhHHHH-HhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhcccc
Q 014654 296 LSGINGVLFYSSNI-FANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVS 374 (421)
Q Consensus 296 ~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (421)
..+.++...+ ....|. .........+.....+....+...|+.|||.....+..+..++++..+........
T Consensus 334 ----~~~~y~gl~~~~~~lg~-~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 406 (521)
T KOG0255|consen 334 ----FSLVYYGLSLNVSGLGG-NIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGG-- 406 (521)
T ss_pred ----HhHHHHhhhhhhhhcCc-hHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchh--
Confidence 2222222221 222232 12244555556777888888999999999999999999999998888865433210
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCC
Q 014654 375 EDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPN 420 (421)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg 420 (421)
.......+++.+.. +.++.. .+.+.+|++|+..|+
T Consensus 407 ------~~~~~~~~~~~~~~----~~~~~~-~~~~~~el~pt~~r~ 441 (521)
T KOG0255|consen 407 ------WLHWILPLLGKFFI----GSAFNL-IFLYSAELIPTVVRN 441 (521)
T ss_pred ------HHHHHHHHHHHHHH----HHHHHH-HHHHHHhhccHHHHH
Confidence 01122222332322 333222 388999999998875
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-28 Score=224.78 Aligned_cols=305 Identities=17% Similarity=0.160 Sum_probs=206.6
Q ss_pred HHHHHHhhhhccccccchHH-HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 014654 56 ALGPIQFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134 (421)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 134 (421)
.+..+...++.++..+.+|. +.+++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+.+.+
T Consensus 21 ~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~ 100 (399)
T PRK05122 21 VMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLL 100 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence 33344555666777788886 67899999999999999999999999999999999999999999999988887766554
Q ss_pred h---c-----chhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHH
Q 014654 135 S---K-----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (421)
Q Consensus 135 ~---~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~ 202 (421)
+ + +++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+.+..+|..+|+.+++.+ +|++.
T Consensus 101 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~ 180 (399)
T PRK05122 101 AGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGL 180 (399)
T ss_pred hhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHH
Confidence 3 2 4667899999999999999999999999999999999999999888888888888877655 89998
Q ss_pred HHhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchh
Q 014654 203 AVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWF 282 (421)
Q Consensus 203 f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (421)
+++.++..++..+.....|++++. + + ++.++++.+++. +
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~-----~-~---------------------------------~~~~~~~~~~~~--~ 219 (399)
T PRK05122 181 GLLIMLLALLGLLLARPRPAVPPV-----K-G---------------------------------ERLPFRRVLGRV--W 219 (399)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCC-----C-c---------------------------------cchhHHHHHHHH--H
Confidence 887666555444333333332210 0 0 000011111110 0
Q ss_pred HHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHH
Q 014654 283 PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (421)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (421)
.......+... .......+.+.++.+.+.+..........++.+++.++.+++.||+++|+.+..+..+..++.++
T Consensus 220 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~ 295 (399)
T PRK05122 220 PYGMGLALASI----GFGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLL 295 (399)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 11111111111 12233344555556666644445556677888899999999999999999888877777666655
Q ss_pred HHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 363 VSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
+... + ..+..+....+.+++++.. .+.......|..|++.||+
T Consensus 296 ~~~~---~------------~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~g~ 338 (399)
T PRK05122 296 LWLA---P------------SPWMALIGAALTGFGFSLV-FPALGVEAVKRVPPQNRGA 338 (399)
T ss_pred HHHh---c------------cHHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCCHHHHHH
Confidence 5431 1 1122223333344444322 3444456678888888764
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=219.65 Aligned_cols=315 Identities=11% Similarity=0.105 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Q 014654 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (421)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 129 (421)
..+..+.+.++..++......+..|.+++++|+++++.+++.+.+.+++.+++++.|++.||+|||+++..+.++++++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~ 105 (438)
T PRK10133 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 34444455567778888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH---HhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhcc----------
Q 014654 130 LII---SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF---------- 196 (421)
Q Consensus 130 ~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~---------- 196 (421)
+++ .++++++.++++|+++|+|.|...+....++.|+.++++|...+++.+..+.+|..+++.++..
T Consensus 106 ~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~ 185 (438)
T PRK10133 106 ALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS 185 (438)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 875 4688999999999999999999999999999998777777778899999999999888877531
Q ss_pred --------------------cchHHHHHh-hhHHHHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHH
Q 014654 197 --------------------VNWRVLAVL-GVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 254 (421)
Q Consensus 197 --------------------l~w~~~f~~-~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (421)
.+||++|+. .++..++.++ .....||.+.. + +
T Consensus 186 ~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~---~-~---------------------- 239 (438)
T PRK10133 186 QDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---N-H---------------------- 239 (438)
T ss_pred hhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---c-c----------------------
Confidence 145666654 3233323222 23334543210 0 0
Q ss_pred HHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHH-Hh-hcCCCchh--HHHHHHHHHHH
Q 014654 255 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNI-FA-NAGISSSN--VATFGLGVVQV 330 (421)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~~~~--~~~~~~~~~~~ 330 (421)
.+++..+....++++++++..+...+...+.... ......|.+.+ .+ ..|.++.. .......++.+
T Consensus 240 ------~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~ 309 (438)
T PRK10133 240 ------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGA----QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFF 309 (438)
T ss_pred ------ccccccchhhhHHHHHhCchHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Confidence 0000011122345666776655444333333322 22233344444 34 45887765 66777888999
Q ss_pred HHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhc
Q 014654 331 VATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIM 410 (421)
Q Consensus 331 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (421)
+++++.+++.||+++|+++..+..+..+++++... .+. ...+..+.+.+++.+. ..|..++..
T Consensus 310 vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~---~~~-------------~~~~~~~~l~glg~~~-i~P~~~s~a 372 (438)
T PRK10133 310 IGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF---AGG-------------HVGLIALTLCSAFMSI-QYPTIFSLG 372 (438)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH---cCC-------------hHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 99999999999999999888776665544433321 110 0112233333444332 356667777
Q ss_pred cccCCCC
Q 014654 411 SEASELG 417 (421)
Q Consensus 411 ~e~~p~~ 417 (421)
.|.+|.+
T Consensus 373 ~~~~~~~ 379 (438)
T PRK10133 373 IKNLGQD 379 (438)
T ss_pred Hcccchh
Confidence 7777654
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-27 Score=213.35 Aligned_cols=256 Identities=15% Similarity=0.099 Sum_probs=188.8
Q ss_pred hhhccccccchHHHHh-hhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh-----c
Q 014654 63 GFTCGYSSPTQAEIIS-DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----K 136 (421)
Q Consensus 63 ~~~~~~~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~ 136 (421)
-......++..+.+.+ ++|+|.+|.+++.+++.+++.++.++.|++.||+|.|+++.++.++.++.++..+++ +
T Consensus 47 F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~ 126 (462)
T PRK15034 47 FCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNT 126 (462)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 3444566777777766 899999999999999999999999999999999999999999999999999999987 8
Q ss_pred chhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHH----HHhhc-----------------
Q 014654 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLA----YLLGL----------------- 195 (421)
Q Consensus 137 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~----~~~~~----------------- 195 (421)
+++.+++.|++.|++ +..++.....+++|+|+++||++.++.....++|..++ |.+..
T Consensus 127 s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g 205 (462)
T PRK15034 127 PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADG 205 (462)
T ss_pred CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 999999999999997 77889999999999999999999999976666666544 33221
Q ss_pred -ccchHHHHHhhhHHHHHHHhhhcc-ccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHH
Q 014654 196 -FVNWRVLAVLGVLPCTLLIPGLFF-IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFA 273 (421)
Q Consensus 196 -~l~w~~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (421)
..+||...++.++..++..+..++ .++.|+ ++.......
T Consensus 206 ~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---------------------------------------~~~~~~~~~ 246 (462)
T PRK15034 206 SVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---------------------------------------SRASIADQL 246 (462)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---------------------------------------cccCHHHHH
Confidence 114777777766655555544443 333321 011123345
Q ss_pred HHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHH
Q 014654 274 ELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLI 351 (421)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 351 (421)
+.+|++..|...+ .+++.+..+..+.++.|++.++ .++... ....+..+...+.++++|+++||+|+++++.+
T Consensus 247 ~vlk~~~~Wllsl----ly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~ 321 (462)
T PRK15034 247 PVLQRLHLWLLSL----LYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLI 321 (462)
T ss_pred HHhCCCchhHHHH----HHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHH
Confidence 5667765554433 3344444566677777777655 333332 22344467788899999999999999999998
Q ss_pred hhHHHHHHHHHH
Q 014654 352 SSSGMAASFFLV 363 (421)
Q Consensus 352 ~~~~~~~~~~~~ 363 (421)
+++.+.++...+
T Consensus 322 ~~i~~~i~~~~~ 333 (462)
T PRK15034 322 NFIFMAIFSALL 333 (462)
T ss_pred HHHHHHHHHHHH
Confidence 887777665443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-28 Score=222.45 Aligned_cols=301 Identities=16% Similarity=0.129 Sum_probs=202.5
Q ss_pred HHhhhhccccccchHH-HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH---h-
Q 014654 60 IQFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---F- 134 (421)
Q Consensus 60 ~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~- 134 (421)
+...+..++..|.+|. +++|+|.|.+++|++.+++.+++.+++++.|+++||+|||++++.+.++..++.+... .
T Consensus 25 ~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~ 104 (392)
T PRK12382 25 FLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAIL 104 (392)
T ss_pred HHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3444456677788885 6789999999999999999999999999999999999999999999887776654332 1
Q ss_pred ----hcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhh
Q 014654 135 ----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLG 206 (421)
Q Consensus 135 ----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~ 206 (421)
.++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+...|..++|.+++.+ +||+.+.+.
T Consensus 105 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 105 PVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT 184 (392)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 357889999999999999999998889999999999999999999999999988888887654 899877765
Q ss_pred hHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHH
Q 014654 207 VLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMI 286 (421)
Q Consensus 207 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (421)
.+..++........||.+.. + + ++++.+...+..++. ..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~---~---~-----------------------------~~~~~~~~~~~~~~~-----~~- 223 (392)
T PRK12382 185 MVLPLLAWAFNGTVRKVPAH---A---G-----------------------------ERPSLWSVVGLIWKP-----GL- 223 (392)
T ss_pred HHHHHHHHHHHHhccCCCCC---c---c-----------------------------cCchHHHHHHHHHHh-----HH-
Confidence 54443333322223332110 0 0 000000011111111 11
Q ss_pred HHHHHHHHhhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHH
Q 014654 287 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (421)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (421)
...+.. ........+.+.++++.+.+.........+++.+++.++.|++.||+++|+.+..+..+..++.+++...
T Consensus 224 ~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 299 (392)
T PRK12382 224 GLALQG----VGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA 299 (392)
T ss_pred HHHHHH----HHHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc
Confidence 111111 1123344455666666677655555556677788999999999999999998888877777666554421
Q ss_pred HHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 367 FFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
++ .+.......+.+.+++.. .|...+...|.+|++.||+
T Consensus 300 ---~~------------~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~g~ 338 (392)
T PRK12382 300 ---PT------------AWVALAGAALTGAGCSLI-FPALGVEVVKRVPSQVRGT 338 (392)
T ss_pred ---cc------------HHHHHHHHHHHHHHHHhH-HHHHHHHHHHhcCHHHHHH
Confidence 11 122233333344443322 4455567788889888864
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-27 Score=216.75 Aligned_cols=275 Identities=17% Similarity=0.196 Sum_probs=201.0
Q ss_pred HHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHH
Q 014654 52 VLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI 131 (421)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 131 (421)
.....+..+...++.....|.+|.+.+++|.+.++.++..+++.+++.+++++.|+++||+|||+++..+.++++++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~ 97 (413)
T PRK15403 18 PMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAA 97 (413)
T ss_pred HHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 33445556777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhh
Q 014654 132 ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGV 207 (421)
Q Consensus 132 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~ 207 (421)
++++++++.++++|+++|++.+...+...+++.|++++++|++++++......+|..+||.+++.+ +||+.|++.+
T Consensus 98 ~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~ 177 (413)
T PRK15403 98 TLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIA 177 (413)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999998877777788899999999999999999999999999999888755 8999999988
Q ss_pred HHHHHHHhh-hccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHH
Q 014654 208 LPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMI 286 (421)
Q Consensus 208 ~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (421)
+..++..+. ++++||+++. +++. .+.+.....++.+++++..+...+
T Consensus 178 ~~~~i~~~~~~~~lp~~~~~---~~~~-----------------------------~~~~~~~~~~~~ll~~~~~~~~~l 225 (413)
T PRK15403 178 VMGLIAFVGLLLAMPETVKR---GAVP-----------------------------FSAKSVLRDFRNVFRNRLFLTGAA 225 (413)
T ss_pred HHHHHHHHHHHHhCCCCccc---cCCC-----------------------------CChHHHHHHHHHHHcCHHHHHHHH
Confidence 776666553 4557876430 0000 000111234556677765554444
Q ss_pred HHHHHHHHhhhchHHHHHhHHHHHhhc-CCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHH
Q 014654 287 GIGLLVLQQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (421)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (421)
...+... .......+.|.++++. |.++.+ +.......+.+++..+.+.+.++..+++.......+..++.++
T Consensus 226 ~~~~~~~----~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l 300 (413)
T PRK15403 226 TLSLSYI----PMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLAL 300 (413)
T ss_pred HHHHHHH----HHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence 3333222 2334444567666654 777665 4444556677777777777665544444433333333333333
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-27 Score=216.63 Aligned_cols=260 Identities=18% Similarity=0.161 Sum_probs=196.2
Q ss_pred hhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 014654 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLF 142 (421)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 142 (421)
.+..+.+.|..|.+++++|.++++.+++.+++.++..+++++.|+++||+|||+.+..+.++.+++.+++.++++++.++
T Consensus 19 ~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (401)
T PRK11043 19 FLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLL 98 (401)
T ss_pred HHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34567778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhc
Q 014654 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (421)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~ 218 (421)
+.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+ +||+.|++.++..++..+..+
T Consensus 99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 99 VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888888999999999999988888888888888888777654 999999988777666655555
Q ss_pred cccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhc
Q 014654 219 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298 (421)
Q Consensus 219 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (421)
+++|+++. + + +++.+.+++++++++..+...+....... .
T Consensus 179 ~~~~~~~~---~-~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 218 (401)
T PRK11043 179 RLKPSKKA---R-K--------------------------------QSQDALTFKQLLKSKTYLGNVLIFAACSA----A 218 (401)
T ss_pred HcCCCCCc---c-c--------------------------------cchHHHHHHHHHcChhHHHHHHHHHHHHH----H
Confidence 55554320 0 0 00112234555555544433222222211 1
Q ss_pred hHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHH
Q 014654 299 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (421)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (421)
......+.|.+.++.|++..+ .......++.+++.++.+++.||+++|+..........++.+.
T Consensus 219 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~ 284 (401)
T PRK11043 219 FFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIA 284 (401)
T ss_pred HHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 233344567777777887665 4445556778889999999999999988766665555554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=218.12 Aligned_cols=273 Identities=12% Similarity=0.091 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Q 014654 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (421)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 129 (421)
.....+.++.+..+......++.+|++.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~ 86 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAV 86 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344556667777778888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhcc-----cchHHHHH
Q 014654 130 LIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-----VNWRVLAV 204 (421)
Q Consensus 130 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----l~w~~~f~ 204 (421)
++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++.+..+....+|..++|.+.+. .+||+.|.
T Consensus 87 ~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~ 166 (394)
T PRK03699 87 AGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA 166 (394)
T ss_pred HHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888888888887776543 38999999
Q ss_pred hhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHH
Q 014654 205 LGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPL 284 (421)
Q Consensus 205 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (421)
+.++..++..+..++ .+.|+. ++++. +++++.. +..+ ++ .
T Consensus 167 ~~~~~~~~~~~~~~~-~~~p~~--~~~~~----------------------------~~~~~~~----~~~~-~~---~- 206 (394)
T PRK03699 167 CIGLVYVAIFILTLF-SEFPAL--GKHAP----------------------------KADKPVA----KEKW-GI---G- 206 (394)
T ss_pred HHHHHHHHHHHHHHh-cCCccc--cccCc----------------------------cccCccc----cccC-Ch---H-
Confidence 877666555443332 222210 00000 0000000 0000 11 1
Q ss_pred HHHHHHHHHHhhhchHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHH
Q 014654 285 MIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFF 361 (421)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 361 (421)
.+...+..+........+..|.|.+++ +.|++..+ .......++.++++++.++++||+++|+.+.....+..+.+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~ 286 (394)
T PRK03699 207 VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMY 286 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Confidence 111222222222224455677888775 45887655 555666788899999999999999999988766655544433
Q ss_pred H
Q 014654 362 L 362 (421)
Q Consensus 362 ~ 362 (421)
+
T Consensus 287 ~ 287 (394)
T PRK03699 287 L 287 (394)
T ss_pred H
Confidence 3
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=226.21 Aligned_cols=269 Identities=14% Similarity=0.108 Sum_probs=193.4
Q ss_pred HHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcch
Q 014654 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS 138 (421)
Q Consensus 59 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 138 (421)
++...++....+...|.+.+++|.+.++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 83 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL 83 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH
Confidence 34555667777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHH-Hhhcc----cchHHHHHhhhHHHHHH
Q 014654 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY-LLGLF----VNWRVLAVLGVLPCTLL 213 (421)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~-~~~~~----l~w~~~f~~~~~~~~~~ 213 (421)
+.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++ .++.. .+||+.|++.+++.++.
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (379)
T TIGR00881 84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIV 163 (379)
T ss_pred HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988 34433 28999998877665554
Q ss_pred -HhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHH
Q 014654 214 -IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLV 292 (421)
Q Consensus 214 -~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (421)
++..++.||+|+....+..+++. +++.+ +.++..+++.+..+...+.+++++..+...+...+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (379)
T TIGR00881 164 SLICFLLLRDSPQSCGLPPAEEMP----------NEEPD----GDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVY 229 (379)
T ss_pred HHHHheeeCCCccccccCccccCc----------ccccc----cccccccccccchHHHHHHHHhcchHHHHHHHHHHHH
Confidence 44555667765421100000000 00000 0000001111122233455666655444433333322
Q ss_pred HHhhhchHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCC
Q 014654 293 LQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGR 345 (421)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~ 345 (421)
. .......+.|.+++ ..|.++.+ .......++.+++.++.+++.||..+
T Consensus 230 ~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~ 281 (379)
T TIGR00881 230 V----VRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFN 281 (379)
T ss_pred H----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcC
Confidence 2 23344555666654 45776655 55667788889999999999998643
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-27 Score=221.44 Aligned_cols=275 Identities=13% Similarity=0.142 Sum_probs=186.9
Q ss_pred HHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH
Q 014654 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII 132 (421)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 132 (421)
....+.......+....+...|.+.++ |++.++.+++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.+.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~ 110 (452)
T PRK11273 32 LGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM 110 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHH
Confidence 333344444455544456677888888 9999999999999999999999999999999999999999999999999988
Q ss_pred Hhhc----chhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHH-HHHHhhcc----cchHHHH
Q 014654 133 SFSK----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIM-LAYLLGLF----VNWRVLA 203 (421)
Q Consensus 133 ~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~~~~~----l~w~~~f 203 (421)
++++ +++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+..+|.. .+++++.. .+||+.|
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f 190 (452)
T PRK11273 111 GFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAAL 190 (452)
T ss_pred HhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHH
Confidence 8763 6778899999999999988888888899999999999999999999988864 45554321 2899999
Q ss_pred HhhhHHHHHH-HhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHH-HHHHhhccch
Q 014654 204 VLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIR-FAELKRKRYW 281 (421)
Q Consensus 204 ~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 281 (421)
++.++..++. ++..+++||+|+.... .++++.++ ... + +.++ .++++.+.+.. .+.+++++..
T Consensus 191 ~i~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~------~~~-~------~~~~-~~~~~~~~~~~~~~~~~~~~~~ 255 (452)
T PRK11273 191 YMPAFAAILVALFAFAMMRDTPQSCGL-PPIEEYKN------DYP-D------DYNE-KHEQELTAKQIFMQYVLPNKLL 255 (452)
T ss_pred HHHHHHHHHHHHHHHHHccCCHhhcCC-CChhhhhh------ccc-c------cccc-ccCCCccHHHHHHHHHHcChHH
Confidence 9877666554 4455667887753110 11111000 000 0 0000 00000011111 1234455544
Q ss_pred hHHHHHHHHHHHHhhhchHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhhcc--CChH
Q 014654 282 FPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKA--GRRL 347 (421)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~--~~~~ 347 (421)
+...+...+... ..+....|.|.++++ .|++... .......++.+++.++.|+++||+ +||.
T Consensus 256 ~~~~l~~~~~~~----~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~ 322 (452)
T PRK11273 256 WYIAIANVFVYL----LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 322 (452)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 443333333222 234456677888775 5776554 455566788889999999999998 4444
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=217.19 Aligned_cols=323 Identities=16% Similarity=0.104 Sum_probs=207.2
Q ss_pred HHHHhhhhccccccchHH-HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhc
Q 014654 58 GPIQFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK 136 (421)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 136 (421)
+.+..........+..|. +++++|+|+.+.+++.+++.+++.+++++.|+++||+|||+.+..+.++..++.+++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~ 88 (366)
T TIGR00886 9 GFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV 88 (366)
T ss_pred HHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh
Confidence 333444455667788885 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred -chhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhh----c----------ccchHH
Q 014654 137 -DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG----L----------FVNWRV 201 (421)
Q Consensus 137 -~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~----~----------~l~w~~ 201 (421)
+++.+++.|+++|++.+. .+....++.|++|+++|+++.++......+|..+++.++ . ..+||+
T Consensus 89 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~ 167 (366)
T TIGR00886 89 QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGW 167 (366)
T ss_pred hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 999999999999998654 566788999999999999999998866666665554443 2 126999
Q ss_pred HHH-hhhHHHH-HHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhcc
Q 014654 202 LAV-LGVLPCT-LLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKR 279 (421)
Q Consensus 202 ~f~-~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (421)
.|+ ..++... ..++...+.+|+|+.. .++++.. ..+.. +..+++......+.++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~~~------------~~~~~~~~~~~~~~~~~~ 225 (366)
T TIGR00886 168 AFVIVPAGILLLPALLIFFVGADTPPGK---PATGKLS-------FKGAR------------WSVGTGALGDQLKVFRDR 225 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccCCccc---ccchhcc-------ccccc------------ccccchhHHHHHHHHhcc
Confidence 984 4343333 3333445556655310 0000000 00000 000001111334455555
Q ss_pred chhHHHHHHHHHHHHhhhchHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHH
Q 014654 280 YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGM 356 (421)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 356 (421)
..+...+....... .......+.+.+++ ..|.++.+ .......+..++++++.|++.||+++|+.+..+....
T Consensus 226 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~ 301 (366)
T TIGR00886 226 HTWILALLYSVTFG----SFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGV 301 (366)
T ss_pred chhhHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHH
Confidence 44443333222222 23344455566665 45776655 4555667888899999999999999988877776655
Q ss_pred HHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCC
Q 014654 357 AASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPN 420 (421)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg 420 (421)
..+..++......+ ......+....+...+.+.+ .+..+.++.|..|. .+|
T Consensus 302 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~-~~g 352 (366)
T TIGR00886 302 AMGAFLVVLGLVSP-----------LSLAVFIVLFVALFFFSGAG-NGSTFALVPHIFRR-ATG 352 (366)
T ss_pred HHHHHHHHhcCCCc-----------chHHHHHHHHHHHHHHhccc-cchhhhcchhhchh-hcc
Confidence 55544444321100 01122222233333333333 33456777888874 555
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-27 Score=216.19 Aligned_cols=311 Identities=13% Similarity=0.107 Sum_probs=221.6
Q ss_pred HHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH
Q 014654 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII 132 (421)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 132 (421)
..++..++..++..+..++.+|.+++++|++..+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.+++
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 45566678888898999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred Hh---hcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc------------
Q 014654 133 SF---SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------------ 197 (421)
Q Consensus 133 ~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l------------ 197 (421)
.. .++++.+++.|++.|+|.|...+....++.+..|+++|++..++.+...++|..++|.++..+
T Consensus 86 ~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 86 WPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred HHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 44 468999999999999999999999999999999999999999999999999999998876533
Q ss_pred ------------------chHHHHHhhhHHHHHHHhhhcc--ccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHH
Q 014654 198 ------------------NWRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEI 257 (421)
Q Consensus 198 ------------------~w~~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (421)
+||++|++.+++.++..+...+ .||.++ + +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~--~----------------------- 215 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----S--D----------------------- 215 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----c--c-----------------------
Confidence 4999998877766555443322 343211 0 0
Q ss_pred HHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcC--CCchh--HHHHHHHHHHHHHH
Q 014654 258 KRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAG--ISSSN--VATFGLGVVQVVAT 333 (421)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~--~~~~~~~~~~~~~~ 333 (421)
+++.+.....+++++++..+...+..++....+ .....+.+.+.++.+ .+... ...........+|+
T Consensus 216 -----~~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e----~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR 286 (410)
T TIGR00885 216 -----AKQISFSASLSRLARIRHYREGVIAQFFYVGVQ----IMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISR 286 (410)
T ss_pred -----cccccchhhHHHHHhChhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 000011112345556655554444444433332 233445555555443 22221 23444456778999
Q ss_pred HHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhcccc
Q 014654 334 GVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEA 413 (421)
Q Consensus 334 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 413 (421)
++++++.||+++|+.+.++.....+++++.... +. ......+.+.+.+.+.. .|..++...+.
T Consensus 287 ~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~---~~-------------~~~~~~l~~~glf~s~~-fp~i~sl~~~~ 349 (410)
T TIGR00885 287 FIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA---GG-------------HVGLYCLTLCSAFMSLM-FPTIYGIALKG 349 (410)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---CC-------------hHHHHHHHHHHHHHHHH-HHHHHHHHHhh
Confidence 999999999999998887777766665555431 10 11223333334444333 47777788887
Q ss_pred CCCCCC
Q 014654 414 SELGKP 419 (421)
Q Consensus 414 ~p~~~r 419 (421)
.+++.+
T Consensus 350 ~g~~~~ 355 (410)
T TIGR00885 350 LGQDTK 355 (410)
T ss_pred hhhhhh
Confidence 777654
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-27 Score=222.86 Aligned_cols=347 Identities=15% Similarity=0.117 Sum_probs=230.9
Q ss_pred HHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH
Q 014654 54 VVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133 (421)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 133 (421)
.+.++.+...++....++..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 93 (471)
T PRK10504 14 IVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCA 93 (471)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHH
Q 014654 134 FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLP 209 (421)
Q Consensus 134 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~ 209 (421)
++++++.++++|+++|++.+...+...+++.|++|+++|+++.++......+|..++|.+++.+ +||+.|++....
T Consensus 94 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~ 173 (471)
T PRK10504 94 LSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPV 173 (471)
T ss_pred HhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998888665 899999987766
Q ss_pred HHHHHhh-hccccCChHHHHHcCCHHHHHHHHH---------HHhCCCcc--hHHHHHH----------HHHHHhhcchh
Q 014654 210 CTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQ---------VLRGFDTD--ISIEVNE----------IKRSVASSSRR 267 (421)
Q Consensus 210 ~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~---------~~~~~~~~--~~~~~~~----------~~~~~~~~~~~ 267 (421)
..+..+. ....|+.+. ++.+.+....... ...+.... ....... .....+....+
T Consensus 174 ~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (471)
T PRK10504 174 GIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNR 250 (471)
T ss_pred HHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5555443 333454331 1112221111000 00111000 0000000 00000111111
Q ss_pred hhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhhccC
Q 014654 268 TAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAG 344 (421)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~ 344 (421)
+..+. ++++++.+.......++.... .....++.|++++. .|.++.. .......++.+++.++.+++.||+|
T Consensus 251 ~~~~~-~l~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g 325 (471)
T PRK10504 251 ALFSL-KLFRTRTFSLGLAGSFAGRIG----SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFG 325 (471)
T ss_pred CccCH-HHhcccchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11122 356666555544433333322 33445566776663 6776655 4555566777788899999999999
Q ss_pred ChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 345 RRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
+|+.+..+..+..++..++..... + . + .+......++.+.+.+.. .+....+..+..|++.||+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~-------~-~-~---~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~ 389 (471)
T PRK10504 326 YRRVLVATTLGLALVSLLFMLVAL-------L-G-W---YYLLPFVLFLQGMVNSTR-FSSMNTLTLKDLPDNLASS 389 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHhccc-------c-c-c---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCHHhccc
Confidence 999998888777766555443210 0 0 0 111112222223333333 2344567778888888774
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=220.43 Aligned_cols=361 Identities=17% Similarity=0.163 Sum_probs=254.4
Q ss_pred ccCchhHHHHHHHHHHHHHHhhhhccccccchHHHHhhh-C-------CChhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 014654 42 RDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDL-K-------LTISEFSIFGSLANVGAMVGAIASGQIAEYIG 113 (421)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~-------~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G 113 (421)
...+|+....+.+..++.|.++++...++.+.|.+...+ | .++...+.+..+..+|..+||++.|++.||+|
T Consensus 33 ~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~G 112 (538)
T KOG0252|consen 33 EGLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFG 112 (538)
T ss_pred cchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344688888899999999999999999999988877654 2 34556789999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc-------chhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHH
Q 014654 114 RKGSLMIAAVPNIIGWLIISFSK-------DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG 186 (421)
Q Consensus 114 rr~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 186 (421)
||+++...+++..++++++++.. -.+++...|++.|+|.|+-+|...++.+|...+++||...+......+.|
T Consensus 113 RK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~G 192 (538)
T KOG0252|consen 113 RKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFG 192 (538)
T ss_pred chhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchh
Confidence 99999999999999999887752 24577788999999999999999999999999999999888876666666
Q ss_pred HHHHHHhhccc-------------------chHHHHHhhhHHHHHHHhhhccccCChHHHHHcC-CHHHHHHHHHHHhCC
Q 014654 187 IMLAYLLGLFV-------------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMG-MTEDFESSLQVLRGF 246 (421)
Q Consensus 187 ~~~~~~~~~~l-------------------~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~ 246 (421)
...|.+++-.+ -||..+.+++++.+......+.+||++++..... +.+++.+..++..
T Consensus 193 ilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~-- 270 (538)
T KOG0252|consen 193 ILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVL-- 270 (538)
T ss_pred HhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccc--
Confidence 66665554322 3999999999999999988999999998763222 2222221111100
Q ss_pred CcchHHHHHHHHHHHhhcchhhhHH---HHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--H-
Q 014654 247 DTDISIEVNEIKRSVASSSRRTAIR---FAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--V- 320 (421)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~- 320 (421)
+. +..+.+. .+...+.++.+ +...+..+ .-..++.....++..-..++..+.+...+++..|+.+.. .
T Consensus 271 ~~----~~~~~~~-~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~ 344 (538)
T KOG0252|consen 271 SV----DIEAEST-AESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYH 344 (538)
T ss_pred cc----ccchhhc-cccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHH
Confidence 00 0000000 01111111112 22333222 223455566666655555667777888888877765544 1
Q ss_pred --------HHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHH
Q 014654 321 --------ATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLV 392 (421)
Q Consensus 321 --------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (421)
...+...+.++|..+...++|++||++..+.+++++.+..+.++..+.... ...-..+...
T Consensus 345 ~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~-----------~~~Gf~v~y~ 413 (538)
T KOG0252|consen 345 ELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE-----------NTIGFVVLYS 413 (538)
T ss_pred HHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccc-----------ccCceeehHH
Confidence 122223334456777778899999999999999999998888886554211 1112223334
Q ss_pred HHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 393 TVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
+..++..+|.......+.+|.+|++.||+
T Consensus 414 l~~ff~NFGPn~ttfivpaE~FParvR~t 442 (538)
T KOG0252|consen 414 LTFFFGNFGPNATTFIVPAEIFPARVRST 442 (538)
T ss_pred HHHHHHhcCCCceeEEeehhhchHHHhhh
Confidence 44556677888888899999999999986
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=213.56 Aligned_cols=267 Identities=15% Similarity=0.103 Sum_probs=195.8
Q ss_pred HHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH
Q 014654 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII 132 (421)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 132 (421)
..+.++.+..+.+.+...+.+|.+.+++|.|.++.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~ 88 (381)
T PRK03633 9 LLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGL 88 (381)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhcccc---hHHHHHhhhHH
Q 014654 133 SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN---WRVLAVLGVLP 209 (421)
Q Consensus 133 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~---w~~~f~~~~~~ 209 (421)
+++++++.++++|+++|++.+...+...+.+.+..++++|++++++++.+..+|..+|+.+++.+. ++...+..+..
T Consensus 89 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~ 168 (381)
T PRK03633 89 GLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLV 168 (381)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 999999999999999999999998888888889999999999999999999999999999998761 12222322222
Q ss_pred HHHHH-hhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHH
Q 014654 210 CTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (421)
Q Consensus 210 ~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (421)
....+ +.....++++. ++ ++..+.++.++++..+......
T Consensus 169 ~~~~~~~~~~~~~~~~~------------------------------------~~---~~~~~~~~~~~~~~~~~~~~~~ 209 (381)
T PRK03633 169 LAAILPLLFTRILNQQA------------------------------------EN---HDSTSIWPMLKLRQARLGVNGC 209 (381)
T ss_pred HHHHHHHHHhcccCCCC------------------------------------CC---CCCCCHHHHHHhcchHHHHHHH
Confidence 21111 11111222100 00 0011233445554444322212
Q ss_pred HHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHH
Q 014654 289 GLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (421)
...... ......+.|.+.++.|.++.. .......++.+++++..+++.||+++|+.+..+.....++.+.
T Consensus 210 ~~~~~~----~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~ 281 (381)
T PRK03633 210 IISGIV----LGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIA 281 (381)
T ss_pred HHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 221111 223334567777777877555 4555667888999999999999999999888777776665543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-26 Score=212.89 Aligned_cols=268 Identities=19% Similarity=0.197 Sum_probs=198.5
Q ss_pred HHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchh
Q 014654 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS 139 (421)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 139 (421)
+..........+.+|.+.+++|.+.++.++..+.+.++..+++++.|+++||+|||+.+..+.++.+++.+++..+++++
T Consensus 13 ~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~ 92 (392)
T PRK10473 13 LLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSS 92 (392)
T ss_pred HHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 33444555566889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHh
Q 014654 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (421)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~ 215 (421)
.+++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.++..+ +||+.|++.+...++..+
T Consensus 93 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~ 172 (392)
T PRK10473 93 LFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLL 172 (392)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988888887654 899999887766555544
Q ss_pred -hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHH
Q 014654 216 -GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQ 294 (421)
Q Consensus 216 -~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (421)
..+++||+++. +.+ + +.......++.++++..+.......+....
T Consensus 173 ~~~~~~~~~~~~---~~~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (392)
T PRK10473 173 LSLFILKETRPA---RAP-A------------------------------ASSKPRENSESLLNRFFLSRLVITTLSVTV 218 (392)
T ss_pred HHHHHcCCCCCc---ccC-C------------------------------ccchHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 34556665321 000 0 000011122334443333222222222111
Q ss_pred hhhchHHHHHhHHHHH-hhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHH
Q 014654 295 QLSGINGVLFYSSNIF-ANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (421)
......+.|.+. ++.|+++.. ......+++.+++.++.+++.||+++|+.+..+.....++.+.+..
T Consensus 219 ----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 288 (392)
T PRK10473 219 ----ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLAL 288 (392)
T ss_pred ----HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 112223334443 456877655 4556678888999999999999999999988888777766665554
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=214.12 Aligned_cols=260 Identities=20% Similarity=0.238 Sum_probs=196.7
Q ss_pred hccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHH
Q 014654 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMG 144 (421)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (421)
..++..|..|.+.+++|+++++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+.+.++++++.+++.
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM 85 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHh-hhcc
Q 014654 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFF 219 (421)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~-~~~~ 219 (421)
|++.|++.+...+...+++.|++|+++|++++++......+|..++|.+++.+ +||+.|++.++..++..+ ..++
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999887665 899999887776665544 4455
Q ss_pred ccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhch
Q 014654 220 IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299 (421)
Q Consensus 220 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (421)
+||+++.. ++ + +.+.++....+++.++++..+...+...+. +...
T Consensus 166 ~~~~~~~~---~~-~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 210 (377)
T PRK11102 166 IPETLPKE---RR-Q---------------------------PFHLRTTIRNFASLFRHKRVLGYMLASGFS----FAGM 210 (377)
T ss_pred CCccCccc---cc-C---------------------------CCChHHHHHHHHHHHcChHHHHHHHHHHHH----HHHH
Confidence 67653210 00 0 000001112344555554433332222211 1122
Q ss_pred HHHHHhHHHHH-hhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHH
Q 014654 300 NGVLFYSSNIF-ANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (421)
Q Consensus 300 ~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 359 (421)
.....+.|.++ +..|.++.+ .......++.+++.++.+++.||+|+|+.+..+.....+.
T Consensus 211 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~ 273 (377)
T PRK11102 211 FSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIM 273 (377)
T ss_pred HHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 33333344444 446877665 5566677888999999999999999999888777654443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-26 Score=210.73 Aligned_cols=315 Identities=19% Similarity=0.235 Sum_probs=205.3
Q ss_pred HhhhhccccccchHHHHhhhC--CChhhHHHHHHH-----HHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH
Q 014654 61 QFGFTCGYSSPTQAEIISDLK--LTISEFSIFGSL-----ANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133 (421)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~~~~--~s~~~~~~~~s~-----~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 133 (421)
.+.++....+...+.+.+++. .++++.+.+.+. ..++..+++++.|+++||+|||+++..+.++..++.++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 83 (394)
T TIGR00883 4 VEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666766654 455666655443 2333456899999999999999999999999999999999
Q ss_pred hhcchh--------hHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhc----------
Q 014654 134 FSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL---------- 195 (421)
Q Consensus 134 ~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~---------- 195 (421)
++++++ .+++.|+++|++.+...+...+++.|++++++|++..++.+.+..+|..+++.++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~ 163 (394)
T TIGR00883 84 LLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDA 163 (394)
T ss_pred hCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999875 47888999999999999999999999999999999999999999999998887652
Q ss_pred --ccchHHHHHhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHH
Q 014654 196 --FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFA 273 (421)
Q Consensus 196 --~l~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (421)
..+||+.|++.++..++........||++++..+++ ++++.+.+.+
T Consensus 164 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~ 211 (394)
T TIGR00883 164 LLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE--------------------------------KHKKKRGPIR 211 (394)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh--------------------------------ccccccCCHH
Confidence 238999998877766665555555677654211100 0001112233
Q ss_pred HHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHH-hhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHH
Q 014654 274 ELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIF-ANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLL 350 (421)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 350 (421)
+.++++.. ......... +...........+.|.+. ++.|.++.. .......+..+++.++.+++.||++||+.+.
T Consensus 212 ~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 289 (394)
T TIGR00883 212 ETLTKHRK-PFLLGLGLV-IATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI 289 (394)
T ss_pred HHHHhchH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 44444321 122222222 222222344555667776 456776655 4556667888999999999999999999776
Q ss_pred HhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 351 ISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
.+..+..+..+.+........ ..+.......+.+.+++. ..+...++..|.+|++.|++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~~~ 348 (394)
T TIGR00883 290 IFTVLAALLAVPLLMALLDSG-----------SFTLFFFLVLGLALIGGM-YTGPMGSFLPELFPTEVRYT 348 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-----------chHHHHHHHHHHHHHHHH-HhhhHHHHHHHhCCccceee
Confidence 554444332211111111000 012222223333333332 24556789999999999874
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=216.86 Aligned_cols=279 Identities=14% Similarity=0.138 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Q 014654 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (421)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 129 (421)
.......+................|.+++ +|+++++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~ 105 (438)
T TIGR00712 27 QVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVM 105 (438)
T ss_pred HHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHH
Confidence 33344444555555555555666777776 59999999999999999999999999999999999999999999999998
Q ss_pred HHHHhh----cchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhcc-----cchH
Q 014654 130 LIISFS----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-----VNWR 200 (421)
Q Consensus 130 ~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----l~w~ 200 (421)
++.++. ++++.+.+.|++.|++.|...+.....+.|++|+++|++++++++.+..+|..+++.+... .+||
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~ 185 (438)
T TIGR00712 106 LLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWH 185 (438)
T ss_pred HHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhH
Confidence 887764 4677788899999999999888888999999999999999999999999998888765433 2899
Q ss_pred HHHHhhhHHHHHHH-hhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhcc
Q 014654 201 VLAVLGVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKR 279 (421)
Q Consensus 201 ~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (421)
+.|++.++..++.. +..+++||+|+.... .+.++. +.+..+ +. .+..+.+.+.++...+.+++++
T Consensus 186 ~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~ 251 (438)
T TIGR00712 186 AALYFPAICAIIVALFAFAMMRDTPQSCGL-PPIEEY-------RNDYPD---DY---NEKAEQELTAKEIFMQYVLPNK 251 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHhcCC-CCchhc-------cccccc---cc---ccccccccchHHHHHHHHccCc
Confidence 99999877766654 455667887653110 000000 000000 00 0000000001111122355565
Q ss_pred chhHHHHHHHHHHHHhhhchHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChH
Q 014654 280 YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRL 347 (421)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 347 (421)
..+...+...+... ..+....|.|.++++ .|++..+ ....+..+.++++.++.|+++||+++++
T Consensus 252 ~~~~~~~~~~~~~~----~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~ 318 (438)
T TIGR00712 252 LLWYIAIANVFVYL----LRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN 318 (438)
T ss_pred hHHHHHHHHHHHHH----HHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 55544333333222 234555677777765 4776654 5566778889999999999999996543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=210.68 Aligned_cols=263 Identities=14% Similarity=0.059 Sum_probs=184.4
Q ss_pred HHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhc
Q 014654 57 LGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK 136 (421)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 136 (421)
++.+...+.........+.+.+++|.+..+.+++.+.+.+++.+++++.|+++||+|||++++.+.++.+++++.+.+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~ 89 (393)
T PRK11195 10 AAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI 89 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444556667889999999999999999999999999999999999999999999999999988887776
Q ss_pred chhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhhHHHHHH
Q 014654 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLL 213 (421)
Q Consensus 137 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~w~~~f~~~~~~~~~~ 213 (421)
+. ++.|+++|++.+...|...+++.|++|+++|+++.++.+....+|..+||.+++.+ .|+..+.+.+...++.
T Consensus 90 ~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 90 HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLA 166 (393)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 77899999999999999999999999999999999999999999999999999887 4555555555444444
Q ss_pred HhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHH
Q 014654 214 IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVL 293 (421)
Q Consensus 214 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (421)
.+..+.+||+|... ++++++..+ ... +....++.+++++..+...+...+...
T Consensus 167 ~~~~~~l~~~~~~~--~~~~~~~~~--------------~~~-----------~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (393)
T PRK11195 167 ALFNLFIPRLGARR--PGQSWNPIA--------------LLR-----------DFFHACRVLWRDKLGRFSLAGTTLFWG 219 (393)
T ss_pred HHHHhcCCCCcccc--cccCCCHHH--------------HHH-----------HHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 44556678765311 000000000 000 001123455666554443333222222
Q ss_pred HhhhchHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhh
Q 014654 294 QQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISS 353 (421)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 353 (421)
.. ....+..+.+.+ ..|.++.+ ......+++.+++.++.+++.||.++++.+..+.
T Consensus 220 ~~----~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~ 278 (393)
T PRK11195 220 AG----ATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI 278 (393)
T ss_pred HH----HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 21 122222333332 34776655 5666778889999999999999998888776664
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-27 Score=220.38 Aligned_cols=280 Identities=12% Similarity=0.094 Sum_probs=201.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccccchHHHHh----------------------hhCCChhhHHHHHHHHHHHHHHHHH
Q 014654 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIIS----------------------DLKLTISEFSIFGSLANVGAMVGAI 103 (421)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~s~~~~~~~~s~~~~~~~~~~~ 103 (421)
+.++.+..++.++......+....+...+.+.+ |++++..+.|++.+.+.+++.++++
T Consensus 15 ~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~ 94 (465)
T TIGR00894 15 SFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQI 94 (465)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHc
Confidence 445556566666666666677666666666665 7899999999999999999999999
Q ss_pred HHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh--cchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHH
Q 014654 104 ASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQL 181 (421)
Q Consensus 104 ~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 181 (421)
+.|+++||+|||+++..+.++.+++.+++.++ ++++.+++.|+++|++.+...+....++.|++|+++|+++.++...
T Consensus 95 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 174 (465)
T TIGR00894 95 PVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTS 174 (465)
T ss_pred chHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998887544 5688899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccc-----chHHHHHhhhHHHHHHHhhhc-cccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHH
Q 014654 182 SVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVN 255 (421)
Q Consensus 182 ~~~~G~~~~~~~~~~l-----~w~~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (421)
+..+|..+++++++.+ +||+.|++.++..++..+.++ +.+|+|+.. ++.+++|. +..+.
T Consensus 175 ~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~-~~i~~------------- 239 (465)
T TIGR00894 175 GFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH-PCISKFEK-KYINS------------- 239 (465)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC-CCCCHHHH-HHHHh-------------
Confidence 9999999988887544 899999998877766655444 456666411 00111111 00000
Q ss_pred HHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHH
Q 014654 256 EIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVA 332 (421)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~ 332 (421)
....+.++.+.+..++++++++..+...+ ..+......+.+..|.|.++++ .|.+..+ ....+..++.+++
T Consensus 240 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~ 313 (465)
T TIGR00894 240 --SLQGQKGSTRQSLPIKAIPKSLPVWAIWF----AIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLC 313 (465)
T ss_pred --hcccccCCCCCCCCHHHHhcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHH
Confidence 00000001112234667777655443333 2333333355666788877754 5776655 5566678889999
Q ss_pred HHHHHHHhhccCCh
Q 014654 333 TGVNTWLMDKAGRR 346 (421)
Q Consensus 333 ~~~~g~l~d~~~~~ 346 (421)
.++.|+++||+++|
T Consensus 314 ~~~~g~l~d~~~~~ 327 (465)
T TIGR00894 314 SIFAGYLADFLKSS 327 (465)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999987643
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-27 Score=219.61 Aligned_cols=307 Identities=14% Similarity=0.142 Sum_probs=215.2
Q ss_pred hhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh-----hcc
Q 014654 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-----SKD 137 (421)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~ 137 (421)
.+..+...+.+|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..+. .++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (417)
T PRK10489 30 IFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPS 109 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCc
Confidence 344456667788899999999999999999999999999999999999999999999888877777665442 567
Q ss_pred hhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHH
Q 014654 138 SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL 213 (421)
Q Consensus 138 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~ 213 (421)
++.+++.|++.|++.+...+...+++.|++|+++|+++.++......+|..+||.+++.+ +|++.|++.++..++.
T Consensus 110 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~ 189 (417)
T PRK10489 110 LLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFIT 189 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 888999999999999888888899999999999999999999999999999999988765 8999998877776666
Q ss_pred HhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHH
Q 014654 214 IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVL 293 (421)
Q Consensus 214 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (421)
.+..+.+|++++.. .+.+ +..++....++.+++++..+...+...+...
T Consensus 190 ~~~~~~l~~~~~~~---~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (417)
T PRK10489 190 LLPLLRLPALPPPP---QPRE----------------------------HPLRSLLAGFRFLLASPVVGGIALLGGLLTM 238 (417)
T ss_pred HHHHHhCCCCCCCC---cccc----------------------------cchHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 66666677654210 0000 0000111233445555544433332222111
Q ss_pred HhhhchHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhh
Q 014654 294 QQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLE 370 (421)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (421)
......+.|.+.++ .|.++.. ......+++.+++.++.+++.||.++++.+..+.++..++.+++... +
T Consensus 239 -----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~---~ 310 (417)
T PRK10489 239 -----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM---P 310 (417)
T ss_pred -----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc---c
Confidence 12334456666666 6776654 55566788899999999999999877777777776666665544321 0
Q ss_pred ccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 371 GFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
......++.++++.+.+. ..+...+++.|..|++.||+
T Consensus 311 ------------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~ 348 (417)
T PRK10489 311 ------------MWILAVLCLALFGYLSAI-SSLLQYTLLQTQTPDEMLGR 348 (417)
T ss_pred ------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHHHHH
Confidence 112222333333333222 13455678899999988874
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-26 Score=209.26 Aligned_cols=244 Identities=14% Similarity=0.156 Sum_probs=181.4
Q ss_pred hhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 014654 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLF 142 (421)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 142 (421)
.+......|.+|.+.+++|.|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++.+++.++++++.++
T Consensus 21 ~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 100 (394)
T PRK11652 21 QMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLI 100 (394)
T ss_pred HHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 35556777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHh-hh
Q 014654 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GL 217 (421)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~-~~ 217 (421)
+.|++.|++.+...+....+..|.+++++|+++.++.+.+..+|..++|.+++.+ +||+.|++.++..++..+ ..
T Consensus 101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK11652 101 AASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMA 180 (394)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888899999999999999999999999888888887655 899999987766554433 44
Q ss_pred ccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhh
Q 014654 218 FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (421)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (421)
++.||+++.. + ++.+....+++.++++..+...+.......
T Consensus 181 ~~~~~~~~~~---~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 221 (394)
T PRK11652 181 RWMPETRPAD---A--------------------------------RRTRVLASYRTLLSNRRFNCYLLMLIGTLA---- 221 (394)
T ss_pred HhCCccCccc---c--------------------------------chhHHHHHHHHHHcChHHHHHHHHHHHHHH----
Confidence 5567764210 0 000112334455555544433332222111
Q ss_pred chHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCC
Q 014654 298 GINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGR 345 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~ 345 (421)
.......+.+.++++ .|.++.+ .......++.+++..+.+++.||.++
T Consensus 222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 272 (394)
T PRK11652 222 GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 272 (394)
T ss_pred HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122223333444544 6776655 44445567777888888888888873
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-26 Score=207.96 Aligned_cols=305 Identities=12% Similarity=0.120 Sum_probs=201.3
Q ss_pred HHHHhhhhccccccchHH-HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHH-HHHHHHHHHHHHHHhh
Q 014654 58 GPIQFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM-IAAVPNIIGWLIISFS 135 (421)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~~~~~~~ 135 (421)
.++..++..+...|.+|. +++++|.|.++.|++.+.+.++..+.+++.|+++||+||||.++ .+..+..++.++++++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 84 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN 84 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence 345666677777888886 57889999999999999999999999999999999999988765 4566667778888999
Q ss_pred cchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhH--hhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHH
Q 014654 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL--GSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLP 209 (421)
Q Consensus 136 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~ 209 (421)
++++.+++.|++.|.+.+...|...++..|+.++++|++. .+....+.++|..++|.+++.+ +||+.|++.++.
T Consensus 85 ~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~ 164 (375)
T TIGR00899 85 RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALA 164 (375)
T ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHH
Confidence 9999999999999988888888888888999887777654 5677777788888888777655 899999998877
Q ss_pred HHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHH
Q 014654 210 CTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (421)
Q Consensus 210 ~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (421)
.++..+ .++++||+|++..++ +.+.+.++.++++..+......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T TIGR00899 165 FVLCGVLVWLFLPSYPRGAPGA------------------------------------LTRLEVRGLLASRDTRLLFVAC 208 (375)
T ss_pred HHHHHHHHHHhCCCcccCcccc------------------------------------cCcchhhhhhcCcchHHHHHHH
Confidence 666554 345578765411000 0000112234444443333322
Q ss_pred HHHHHHhhhchHHHHHhHHHHH-hhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHH
Q 014654 289 GLLVLQQLSGINGVLFYSSNIF-ANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (421)
.+.... ......+.|.++ ++.|.++.+ .......+..+++.++.|++.||++||+.+..+.+...+.+..+..
T Consensus 209 ~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 284 (375)
T TIGR00899 209 TLMWGC----NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA 284 (375)
T ss_pred HHHHHH----HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 222221 122223344444 456776655 3333444566778899999999999999887766554443333221
Q ss_pred HHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCC
Q 014654 366 AFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGK 418 (421)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 418 (421)
. + ..+.......+.+++.+.. .+....+..|..|++.
T Consensus 285 ~---~------------~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~~~ 321 (375)
T TIGR00899 285 D---N------------SLWALLMLQLLNAIFIGIL-AGIGMLYFQDLMPGRA 321 (375)
T ss_pred H---H------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcchh
Confidence 1 1 1122222222333333322 4556678888888754
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=207.72 Aligned_cols=247 Identities=15% Similarity=0.056 Sum_probs=175.0
Q ss_pred ccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH---h-hcchhhHHHHH
Q 014654 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---F-SKDSSFLFMGR 145 (421)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~r 145 (421)
.+.++.+.+|+|.+.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++. . .++++.+++.|
T Consensus 33 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (402)
T TIGR00897 33 QGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFY 112 (402)
T ss_pred HHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHH
Confidence 3456667789999999999999999999999999999999999999999999999988876553 3 35788888999
Q ss_pred HhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHH-HHHHHhhccc----chHHHHHhhhHHHHHHHh-hhcc
Q 014654 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGI-MLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFF 219 (421)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~~~~~l----~w~~~f~~~~~~~~~~~~-~~~~ 219 (421)
++.|++.+...+...+.+.+++|+++|++++++.+.+.++|. .++|.+++.+ +|+..++.......+..+ ..++
T Consensus 113 ~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 192 (402)
T TIGR00897 113 GIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFS 192 (402)
T ss_pred HHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhc
Confidence 999999988888888889999999999999999999999996 5788877544 766555443332222222 2333
Q ss_pred ccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhch
Q 014654 220 IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299 (421)
Q Consensus 220 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (421)
.++.++.. +++++ ++.++....++.+++++..+...+...+ .....
T Consensus 193 ~~~~~~~~-~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 238 (402)
T TIGR00897 193 NKDIFTPQ-HMQTR-----------------------------EKFSELGKAATILFTNPNVLLGGMVRII----NTIGL 238 (402)
T ss_pred cCCCCCcc-cccCC-----------------------------cchhhHHHHHHHHHcChhHHHHHHHHHH----HHHHH
Confidence 44332100 00000 0000111234456666654433332222 22234
Q ss_pred HHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHH
Q 014654 300 NGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLL 350 (421)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 350 (421)
.....+.|.+.++.|++..+ .......++.+++.++.|+++||++||+.+.
T Consensus 239 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~ 291 (402)
T TIGR00897 239 FGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR 291 (402)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 55566788888888887666 4445667889999999999999999888653
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=205.29 Aligned_cols=290 Identities=25% Similarity=0.342 Sum_probs=229.2
Q ss_pred HHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 014654 55 VALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134 (421)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 134 (421)
..+..+...++.....+..|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~ 83 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF 83 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence 34455667778888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHH
Q 014654 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (421)
Q Consensus 135 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~ 210 (421)
.++++.+++.|++.|++.+...+...+++.|++|+++|++..++......+|..+++.+++.+ +||+.+++.++..
T Consensus 84 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (352)
T cd06174 84 ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG 163 (352)
T ss_pred hccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988777 7999999887776
Q ss_pred HHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHH
Q 014654 211 TLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGL 290 (421)
Q Consensus 211 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (421)
++..+...+++ +. .+....
T Consensus 164 ~~~~~~~~~~~---------------------------------------------------------~~----~~~~~~ 182 (352)
T cd06174 164 LLLALLLLFLL---------------------------------------------------------RL----LLLLAL 182 (352)
T ss_pred HHHHHHHHHHH---------------------------------------------------------HH----HHHHHH
Confidence 66655443321 01 111222
Q ss_pred HHHHhhhchHHHHHhHHHHHhhc-CCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChH-HHHHhhHHHHHHHHHHHHH
Q 014654 291 LVLQQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRL-LLLISSSGMAASFFLVSVA 366 (421)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~~~~~~~~~~~~~~~~~~ 366 (421)
..+...........+.+.+.++. +.++.+ .......++.+++.++.+++.||++||+ .+..+.....++.+.+...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 262 (352)
T cd06174 183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA 262 (352)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 22222223455566677777665 766655 5667778899999999999999999999 8888888888777766642
Q ss_pred HHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 367 FFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
.. .+.......+.+.+.+ ...+....+..|..|++.|++
T Consensus 263 ~~---------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 301 (352)
T cd06174 263 PS---------------LALLLVALLLLGFGLG-FAFPALLTLASELAPPEARGT 301 (352)
T ss_pred cc---------------HHHHHHHHHHHHHHHh-ccchhHHHHHHhhcCHHHHHH
Confidence 11 1233333344444443 336778899999999988863
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-26 Score=210.76 Aligned_cols=277 Identities=17% Similarity=0.152 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHhhhhccccc-cchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q 014654 50 FCVLVVALGPIQFGFTCGYSS-PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (421)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 128 (421)
.++..++...+....+...++ +.+..+.+|.+....+.+.+.++++++++++.+++|.+.||++-.+.+....+++++.
T Consensus 45 ~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~ 124 (495)
T KOG2533|consen 45 FILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLF 124 (495)
T ss_pred HHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHH
Confidence 334444444444444443322 3344466899999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----------c
Q 014654 129 WLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----------N 198 (421)
Q Consensus 129 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----------~ 198 (421)
.++....+|++.+++.|++.|+..+..+|....+++.|+.+++|+..++++.+..++|.++|.+++..+ |
T Consensus 125 ~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g 204 (495)
T KOG2533|consen 125 GFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG 204 (495)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC
Confidence 888888999999999999999999999999999999999999999999999999999999999988662 8
Q ss_pred hHHHHHhhhHHHHHHH-hhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhh
Q 014654 199 WRVLAVLGVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKR 277 (421)
Q Consensus 199 w~~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (421)
|||.|++.+++++... +.++++|++|..- .-.+.+|..-..++.+.. .....+++.+...+++.++
T Consensus 205 W~~~FiI~G~i~~~~gi~~f~~lp~~P~~~-~fl~~~ek~~~~~~~~~~------------~~~~~~~~~~~~~~~~a~~ 271 (495)
T KOG2533|consen 205 WRWLFIIEGVITLVLGIVVFFFLPDNPSKA-WFLTDEEKELVVERLRES------------PSGGIENKFKWKGFKEALK 271 (495)
T ss_pred ceeehhHHHHHHHHHHheEEEEecCChhhc-cccchHHHHHHHHHHHhc------------cCCCcccccCHHHHHHHHh
Confidence 9999999887777665 4677799998621 000111110001110000 0001111145567778888
Q ss_pred ccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhhcc
Q 014654 278 KRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKA 343 (421)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~ 343 (421)
++..+...+..++... ..+.+.+|.|.++++ .|++..+ ...++..++++++.+++|+++||.
T Consensus 272 dp~vw~~~l~~~~~~l----v~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 272 DPGVWPFSLCYFFLKL----VNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL 336 (495)
T ss_pred chhHHHHHHHHHHHhh----ccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence 8776665554444433 466778889999887 4576555 778888999999999999999994
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-26 Score=212.74 Aligned_cols=323 Identities=12% Similarity=0.100 Sum_probs=204.2
Q ss_pred ccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHH-H
Q 014654 66 CGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM-G 144 (421)
Q Consensus 66 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 144 (421)
....+...|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.++++++++++++++.+++ .
T Consensus 35 ~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (455)
T TIGR00892 35 PKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTA 114 (455)
T ss_pred hcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345667789999999999999999999999999999999999999999999999999999999999999999998875 4
Q ss_pred HHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhccc
Q 014654 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFI 220 (421)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~~~ 220 (421)
|++.|++.+...+...+++.++++ ++|+++.++.+.+..+|..++|.+++.+ +||+.|++.+++.++..+..+++
T Consensus 115 ~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 115 GFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 799999998877777888899996 7999999999999999999888877665 89999999877666554433333
Q ss_pred -cCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhch
Q 014654 221 -PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299 (421)
Q Consensus 221 -~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (421)
++.+.. ++.+.++. +.....+.. + +.+..... ++..+....++++++.++.......+... ..
T Consensus 194 ~~~~~~~--~~~~~~~~----~~~~~~~~~--~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~ 257 (455)
T TIGR00892 194 RPVGPSQ--RVSKSKSK----EGLPPDGST--K---KLSKKSTA-EKINRFLDFSLFTHRGFLVYLSGNVIMFL----GF 257 (455)
T ss_pred CCCCccc--cccccccc----ccCCCCCcc--c---cccccchh-hhhhhhcchHHhcCchHHHHHHHHHHHHH----Hc
Confidence 322110 00000000 000000000 0 00000000 00001111235555554433333222222 22
Q ss_pred HHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhcc--CChHHHHHhh--HHHHHHHHHHHHHHHhhccc
Q 014654 300 NGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKA--GRRLLLLISS--SGMAASFFLVSVAFFLEGFV 373 (421)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 373 (421)
.....+.+.+.++.|++... ....+.+++.++++++.+++.||. ++|+....+. ...+++.++... .+
T Consensus 258 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~~--- 331 (455)
T TIGR00892 258 FAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL---AG--- 331 (455)
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH---hc---
Confidence 33345566666777887655 556667888889999999999973 3343333322 222222222211 11
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 374 SEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
..+..++...+++++++ ...+....++.|.+|++.+|+
T Consensus 332 ---------~~~~~~i~~~~~G~~~g-~~~~~~~~~~~~~~~~~~~g~ 369 (455)
T TIGR00892 332 ---------DYTGLVIYCIFFGLSFG-SVGALLFEVLMDLVGAQRFSS 369 (455)
T ss_pred ---------hHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHhhHHHHhh
Confidence 11222233333344433 224556778889999887764
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=207.42 Aligned_cols=308 Identities=12% Similarity=0.061 Sum_probs=209.2
Q ss_pred hhhccccccchHH-HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 014654 63 GFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFL 141 (421)
Q Consensus 63 ~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (421)
....+...+.+|. +++++|++..++|++.+.+.++..+++++.|+++||+|||+++.++.++.+++.+..+++++++.+
T Consensus 20 ~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (395)
T PRK10054 20 TIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLV 99 (395)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444555565554 567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhhHHHHHHHh-hh
Q 014654 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIP-GL 217 (421)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~w~~~f~~~~~~~~~~~~-~~ 217 (421)
++.|.+.|.+.+...+...++..|.+++++|+++.++.....++|..++|.+++.+ +|+..|++.++..++..+ ..
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~ 179 (395)
T PRK10054 100 VLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQ 179 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 99999999888888888899999999999999999999999999999999998876 899999987776666544 33
Q ss_pred ccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhh
Q 014654 218 FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (421)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (421)
+++||+++. ++.+ + ++....++.++++..+...+...+.......
T Consensus 180 ~~~~~~~~~----~~~~------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 224 (395)
T PRK10054 180 IWVQRSEKA----IATE------------------------------T-GSVWSPSVLLQDKALLWFTCSGFLASFVSGA 224 (395)
T ss_pred HHHhccccc----cccc------------------------------h-hhhhhhhhhccCceehHHHHHHHHHHHHHHH
Confidence 445554210 0000 0 0001124455665555444433332222211
Q ss_pred chHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccC
Q 014654 298 GINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSE 375 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (421)
.......+.+.. ++.+.+... .......+..+......+++.||.++|+.+..+..+..++...+.... +
T Consensus 225 ~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~----- 296 (395)
T PRK10054 225 FASCISQYVMVV-ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG--N----- 296 (395)
T ss_pred hhhhHHHHHHHh-cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc--h-----
Confidence 111222222222 223333322 333333445556677888999999999988888777776665554311 0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 376 DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
..+...+...+++.+.. ...|....++.+..|++.|++
T Consensus 297 -------~~~~~~~~~~~~~~g~~-~~~p~~~~~~~~~~p~~~~~~ 334 (395)
T PRK10054 297 -------SLLLWGMSAAVFTVGEI-IYAPGEYMLIDHIAPPGMKAS 334 (395)
T ss_pred -------HHHHHHHHHHHHHHHHH-HHHhhHHHHHHHhCCccccee
Confidence 11222333334444432 225566778889999998874
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=203.91 Aligned_cols=259 Identities=17% Similarity=0.192 Sum_probs=188.7
Q ss_pred hhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 014654 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM 143 (421)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (421)
......++.+|.+++++|++.++.+++.+++.+++.+++++.|+++||+|||+++..+.++..++.+.+ .+++.+.+++
T Consensus 14 ~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 92 (355)
T TIGR00896 14 PALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFA 92 (355)
T ss_pred CccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHH
Confidence 344667889999999999999999999999999999999999999999999999999998888888877 7789999999
Q ss_pred HHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc------chHHHHHhhhHHHHHHHhhh
Q 014654 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGL 217 (421)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l------~w~~~f~~~~~~~~~~~~~~ 217 (421)
.|++.|++.+...+....++.|+++ ++|+++.++.+.+..+|..+++.++..+ +||+.|.+.++..++...
T Consensus 93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~-- 169 (355)
T TIGR00896 93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL-- 169 (355)
T ss_pred HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--
Confidence 9999999999988888889999886 6899999999999999988887776544 399888776554433322
Q ss_pred ccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhh
Q 014654 218 FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (421)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (421)
.++|+.++ +++ ++++..+...++.++++..+...+...+.. .
T Consensus 170 ~~~~~~~~------~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 211 (355)
T TIGR00896 170 AWIPQVRR------RVA----------------------------ANQTTTRLTPVRIWRSPLAWQVTVFFGLQS----G 211 (355)
T ss_pred HHhhhhcc------ccC----------------------------CCCCCCCCCCchhhcCHhHHHHHHHHHHHH----H
Confidence 22343311 000 000000112334455544433322222211 2
Q ss_pred chHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhcc-CChHHHHHhhHHHHHHHHHHH
Q 014654 298 GINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKA-GRRLLLLISSSGMAASFFLVS 364 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~ 364 (421)
.+.....+.|.++++.|.+... .......++.++++++.|++.||+ +||+.+..+..+..++.+.+.
T Consensus 212 ~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 281 (355)
T TIGR00896 212 LYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLL 281 (355)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Confidence 2344556778888878887655 566677889999999999999999 456666666666666655444
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-25 Score=205.24 Aligned_cols=312 Identities=14% Similarity=0.049 Sum_probs=205.9
Q ss_pred HHHHHHhhhhccccccchHHHHhhhCCChhh-----HHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHH
Q 014654 56 ALGPIQFGFTCGYSSPTQAEIISDLKLTISE-----FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL 130 (421)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-----~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 130 (421)
.++.+..++..+...+.+|.+.+++|.+..+ .|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 99 (408)
T PRK09874 20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMV 99 (408)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHH
Confidence 3444556667777888999999999988654 48999999999999999999999999999999999999999999
Q ss_pred HHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhh
Q 014654 131 IISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLG 206 (421)
Q Consensus 131 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~ 206 (421)
++.+.++++.+++.|++.|++.+ ..+....++.+++++++|+++.++......+|..++|.+++.+ +||+.|++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 178 (408)
T PRK09874 100 LMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT 178 (408)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 99999999999999999999765 5677788899999999999999999999999999998888765 899999987
Q ss_pred hHHHHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHH
Q 014654 207 VLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285 (421)
Q Consensus 207 ~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (421)
++..++..+ ..+++||+++.. ++++ +. +.....+.++++......
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~----~~~~-----------------------------~~-~~~~~~~~~~~~~~~~~~ 224 (408)
T PRK09874 179 ASVLFLCFLVTLFCIRENFQPV----SKKE-----------------------------ML-HMREVVTSLKNPKLVLSL 224 (408)
T ss_pred HHHHHHHHHHHHHHhccCcccc----cchh-----------------------------hh-HHHHHHHhCcCCchHHHH
Confidence 776665544 344455543200 0000 00 000111223333222211
Q ss_pred HHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh------HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHH
Q 014654 286 IGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN------VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (421)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 359 (421)
....+.... .......+.+.+..+.+.+... ......+++.+++.+..|++.||++||+.+..+.....++
T Consensus 225 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 301 (408)
T PRK09874 225 FVTTLIIQV---ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLL 301 (408)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 111111111 1122223334444443222221 2233446777788899999999999999988877766555
Q ss_pred HHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
.+.+... + ..+...+...+.+.+.+. ..|...++..+..|++.||+
T Consensus 302 ~~~~~~~---~------------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~ 347 (408)
T PRK09874 302 LIPMSFV---Q------------TPLQLGILRFLLGAADGA-LLPAVQTLLVYNSSNQIAGR 347 (408)
T ss_pred HHHHHHh---c------------cHHHHHHHHHHHHhhhHh-hHHHHHHHHHHhCCccccee
Confidence 5443321 1 112222232333333332 24455566778888887764
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=203.84 Aligned_cols=317 Identities=13% Similarity=0.097 Sum_probs=207.4
Q ss_pred ccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhh-----chHHHH-HHHHHHHHHHHHHHHhh---c
Q 014654 66 CGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-----GRKGSL-MIAAVPNIIGWLIISFS---K 136 (421)
Q Consensus 66 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~~-~~~~~~~~~~~~~~~~~---~ 136 (421)
.+..++..|.+.+|+|+|.+++|+..+. .+...+ .+++|+++||+ ||||.+ +.+.++.++.....++. .
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~ 81 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST 81 (356)
T ss_pred chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 3456678899999999999999999755 455554 99999999998 898874 56777777777777776 4
Q ss_pred chhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c--------hHHHHH
Q 014654 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N--------WRVLAV 204 (421)
Q Consensus 137 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~--------w~~~f~ 204 (421)
+.+.+....++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.++..+ + ||..|+
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~ 161 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFF 161 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHH
Confidence 5566777788888888888999999999999999999999999999999999998888544 6 999999
Q ss_pred hhhHHHHHHHhhhcc-ccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhH
Q 014654 205 LGVLPCTLLIPGLFF-IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (421)
Q Consensus 205 ~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (421)
+.++..++..+..++ .||+++. +.+.+ +++++.+..++++++++..+.
T Consensus 162 i~ai~~l~~~~~~~~~~~e~~~~---~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~ 210 (356)
T TIGR00901 162 WTALLILPGLLVTLFLAKEPQED---ASVPK----------------------------PLTQAVLKPIREFFQRKNMIQ 210 (356)
T ss_pred HHHHHHHHHHHHHHHhccCCCcc---cccch----------------------------hHHHHHHHHHHHHHHhcCchH
Confidence 988776666554443 4654210 00000 000111224556666654222
Q ss_pred HHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchhH--HHHHHH-HHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHH
Q 014654 284 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNV--ATFGLG-VVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360 (421)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 360 (421)
............. .......+.+.+.++.|+++.+. .....+ +..+++.++++++.||+|+|+.+..+.++.+++.
T Consensus 211 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~ 289 (356)
T TIGR00901 211 ALLLLLLIVLYKL-GDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTN 289 (356)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 2222222222221 23344455666666688877663 333333 5677999999999999999998888777766655
Q ss_pred HHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
.++......... .. .. ....+....+.++..++.+. ..+...++..|.+|++.|||
T Consensus 290 ~~~~~~~~~~~~-~~-~~--~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~ 345 (356)
T TIGR00901 290 AGFVWLASNGHH-DG-IT--FPHLLMLFLTITLEAVTGGL-GTVAFVAFLSKLSNPKFGAT 345 (356)
T ss_pred HHHHHHHhcCcc-cc-cc--cchHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhcCCCccHH
Confidence 544432111000 00 00 00112222233333333332 25667889999999999985
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=201.66 Aligned_cols=299 Identities=12% Similarity=0.109 Sum_probs=203.3
Q ss_pred cccccchHH-HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHH
Q 014654 67 GYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGR 145 (421)
Q Consensus 67 ~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 145 (421)
....|.++. +++++|.|..++|++.+.+.++..+.+++.|+++||+|||+++..+.++.+++.+.+.++++++.+++.|
T Consensus 27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 106 (400)
T PRK11646 27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSC 106 (400)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 344455554 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhhHHHHHHHh-hhcccc
Q 014654 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIP-GLFFIP 221 (421)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~w~~~f~~~~~~~~~~~~-~~~~~~ 221 (421)
+++|++.+...+...+++.|++|+++|+++.++......+|..+||.+++.+ +||+.|++.++..++..+ ..++.|
T Consensus 107 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~ 186 (400)
T PRK11646 107 ILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLP 186 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999888899999999999999999999999999999999999988777 899999987766555443 334455
Q ss_pred CChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHH
Q 014654 222 ESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGING 301 (421)
Q Consensus 222 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (421)
|.+. ++ .+++.+..++++++++..+............ ...
T Consensus 187 ~~~~-----~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 226 (400)
T PRK11646 187 AYKL-----ST-------------------------------VRTPVREGMTRVLRDKRFVTYVLTLTGYYML----AVQ 226 (400)
T ss_pred cccc-----cc-------------------------------cchhhHHHHHHHHcCchHHHHHHHHHHHHHH----HHH
Confidence 4310 00 0000112344555555443322222111111 122
Q ss_pred HHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHh-hccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcc
Q 014654 302 VLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLM-DKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSR 378 (421)
Q Consensus 302 ~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (421)
...+.|.+.++.+.++.+ ......++..+.+....+++. ||++.++.+..+..+.+++..+++... +
T Consensus 227 ~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~---~------- 296 (400)
T PRK11646 227 VMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS---N------- 296 (400)
T ss_pred HHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh---h-------
Confidence 334567777766555444 333444444544444445554 456666666666666666655444221 0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 379 FYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
....+....++..+.. ...|...+++.|..|++.||+
T Consensus 297 -----~~~~~~~~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~ 333 (400)
T PRK11646 297 -----LQQLFTLICLFYIGSI-IAEPARETLSASLADARARGS 333 (400)
T ss_pred -----HHHHHHHHHHHHHHHH-HHHccHHHHHHhcCCcccchh
Confidence 1122222233333333 224566788999999999985
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=189.15 Aligned_cols=261 Identities=18% Similarity=0.230 Sum_probs=203.3
Q ss_pred hccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchh---hH
Q 014654 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS---FL 141 (421)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~---~l 141 (421)
.-.+.++..+.+.+|+|+|++|.+++.++..+...+..++.|.+.||+|.|++..++.++..+.++..+++.+.+ ++
T Consensus 29 VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~l 108 (417)
T COG2223 29 VWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQL 108 (417)
T ss_pred HHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHH
Confidence 334566777778899999999999999999999999999999999999999999999999999999999986655 99
Q ss_pred HHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHH----HHHhhcccc---hHHHHHhhhHHHHHHH
Q 014654 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIML----AYLLGLFVN---WRVLAVLGVLPCTLLI 214 (421)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~----~~~~~~~l~---w~~~f~~~~~~~~~~~ 214 (421)
++.+.+.|++. ..+.+...++++++||+++|.++|++. ..++|..+ +|.+....+ |+....+..+..++..
T Consensus 109 l~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~ 186 (417)
T COG2223 109 LVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAA 186 (417)
T ss_pred HHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999964 677888999999999999999999998 77777655 555555557 9988887766666654
Q ss_pred h-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhh-HHHHHHhhccchhHHHHHHHHHH
Q 014654 215 P-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTA-IRFAELKRKRYWFPLMIGIGLLV 292 (421)
Q Consensus 215 ~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 292 (421)
+ .++...|.|.... ..++.. ..++.+++++..|. ..+.+
T Consensus 187 v~~~~~~~d~p~~r~-----------------------------------~~~~~~~~~~~~v~~~~~~W~----lsllY 227 (417)
T COG2223 187 VLAWLGMNDVPEHRA-----------------------------------SVKPQLPAQLKAVFSNKDTWL----LSLLY 227 (417)
T ss_pred HHHHHHhCCChhhhc-----------------------------------cccccchhHHHHHhcCcchHH----HHHHH
Confidence 4 4555666654200 011111 34556666655444 44445
Q ss_pred HHhhhchHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHH
Q 014654 293 LQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (421)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (421)
...+.++..+..+.|.+++ ++|.++.. .........+.+.++++|+++||+|.+|++.+.+..++++..++...
T Consensus 228 ~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~ 304 (417)
T COG2223 228 FATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLF 304 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcc
Confidence 5555567778888888776 46887666 66666778888999999999999999999999888888887777653
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=199.55 Aligned_cols=282 Identities=13% Similarity=0.155 Sum_probs=192.7
Q ss_pred hhccCchhHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhh-----ch
Q 014654 40 MLRDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-----GR 114 (421)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Gr 114 (421)
+.++..+++....+.+++. .++......+.+|...++.|.+.++++.+ +.....+ ++.+++|+++||+ ||
T Consensus 5 ~l~~~~~~~~~~~~~l~~~---~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Gr 79 (491)
T PRK11010 5 YLRIFQQPNSAILLILGFA---SGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGR 79 (491)
T ss_pred HHHHHcccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCC
Confidence 4455555665555555444 45566677788899999999999999997 4444444 6899999999999 99
Q ss_pred HHH-HHHHHHHHHHHHHHHHhh---cchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHH
Q 014654 115 KGS-LMIAAVPNIIGWLIISFS---KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLA 190 (421)
Q Consensus 115 r~~-~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~ 190 (421)
|+. +..+.++.+++....++. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.+++
T Consensus 80 rr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg 159 (491)
T PRK11010 80 RRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVS 159 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 885 557777777777777675 4678888899999999999999999999999999999999999999999998888
Q ss_pred HHhhcc-----cchHHHHHhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcc
Q 014654 191 YLLGLF-----VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSS 265 (421)
Q Consensus 191 ~~~~~~-----l~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (421)
+.++.. .|||..|++.++..++..+..++.||+++.. .++++ .+
T Consensus 160 ~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~----------------------------~~ 208 (491)
T PRK11010 160 GGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PVPKT----------------------------LE 208 (491)
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---ccccc----------------------------hh
Confidence 765543 3899999998877666665555577764310 00000 00
Q ss_pred hhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchhH--HH-HHHHHHHHHHHHHHHHHhhc
Q 014654 266 RRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNV--AT-FGLGVVQVVATGVNTWLMDK 342 (421)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~-~~~~~~~~~~~~~~g~l~d~ 342 (421)
+....++++.++++..+.......+..... ........+++.++.|++..+. .. ....++.+++.+++|+++||
T Consensus 209 ~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~---~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr 285 (491)
T PRK11010 209 QAVVAPLRDFFGRNNAWLILLLIVLYKLGD---AFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR 285 (491)
T ss_pred hhHHHHHHHHHcCcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001123455665554443333322222211 1112223333345678877763 32 23356888999999999999
Q ss_pred cCChHHHHHhhHHHHHHH
Q 014654 343 AGRRLLLLISSSGMAASF 360 (421)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~ 360 (421)
+++|+.+..+.++.+++.
T Consensus 286 ~g~~~~l~i~~~l~~l~~ 303 (491)
T PRK11010 286 LSLFRALMIFGILQGVSN 303 (491)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 999887776655545444
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-24 Score=196.59 Aligned_cols=307 Identities=11% Similarity=0.022 Sum_probs=210.3
Q ss_pred HHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHH----HHHHHHHHHHHHHH
Q 014654 57 LGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSL----MIAAVPNIIGWLII 132 (421)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~----~~~~~~~~~~~~~~ 132 (421)
+..+.+.+..+...|.+|.+.+++|.|.+++|++.+++.+...++++++|+++||+||++.. ..+..+..+ ..+
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFS 88 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHH
Confidence 44555566668888999999999999999999999999999999999999999999985433 222222222 244
Q ss_pred HhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhH
Q 014654 133 SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVL 208 (421)
Q Consensus 133 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~ 208 (421)
..+++++.+++.|+++|.+.+...|...++..++ +++|++..+......++|.+++|++++.+ |||..|++...
T Consensus 89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~ 166 (382)
T TIGR00902 89 AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTA 166 (382)
T ss_pred HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 4678999999999999999988888888887664 47889999999999999999999988776 99999887655
Q ss_pred HHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHH
Q 014654 209 PCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (421)
Q Consensus 209 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (421)
..++..+.. .++|+++. +++.+ +++.+.....+++++++..+...+..
T Consensus 167 ~~~~~~~~~-~~~~~~~~---~~~~~----------------------------~~~~~~~~~~~~~l~~~~~~~~l~~~ 214 (382)
T TIGR00902 167 GLAFMLIGF-LIKPTIPP---KDAIP----------------------------EDESQGDSAFIALLKNPMNLRFLAAV 214 (382)
T ss_pred HHHHHHHHH-HcCCCCCC---Ccccc----------------------------ccccccchhHHHHHcChHHHHHHHHH
Confidence 433333333 33333110 00000 00001122355677776665555444
Q ss_pred HHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHH
Q 014654 289 GLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (421)
.+.... ......+.+.+.++.|.++.. .......++.+++.++.+++.||+++|+.+.++.+...+....++..
T Consensus 215 ~l~~~~----~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~ 290 (382)
T TIGR00902 215 CLIQGA----HAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI 290 (382)
T ss_pred HHHHHH----HHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 443332 333444566677778887765 45556678888899999999999999999998888888887766532
Q ss_pred HHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCC
Q 014654 367 FFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPN 420 (421)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg 420 (421)
. ..+..+..-.+.++.++.. .+....++++. |++.|+
T Consensus 291 ~---------------~~~~~~~~q~l~g~~~~~~-~~~~~~~i~~~-~~~~~~ 327 (382)
T TIGR00902 291 E---------------AFPLIFLLQILHCGTFAVC-HLAAMRYIAAQ-PGSEIA 327 (382)
T ss_pred h---------------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHhC-CHhhHH
Confidence 1 1223333334445555443 33456677777 777664
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-25 Score=213.43 Aligned_cols=295 Identities=16% Similarity=0.171 Sum_probs=204.9
Q ss_pred HHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 014654 55 VALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134 (421)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 134 (421)
.++..+...+..++.++.++.++++|+++..+.|++.+.+.++++++.++.|+++||+|||+.+.++.++++++++++++
T Consensus 38 ~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~al 117 (633)
T TIGR00805 38 LTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSL 117 (633)
T ss_pred HHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhC
Confidence 34455666677788889999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hc---------------------------------------------------chhhHHHHHHhhhcchhhhhccchhhh
Q 014654 135 SK---------------------------------------------------DSSFLFMGRLLEGFGVGVISYTVPVYI 163 (421)
Q Consensus 135 ~~---------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i 163 (421)
.+ .+..++++|+++|+|.+..++...+++
T Consensus 118 phf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i 197 (633)
T TIGR00805 118 PHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYI 197 (633)
T ss_pred hHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhh
Confidence 63 245677899999999999999999999
Q ss_pred cccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc--------------------------chHHHHHhhhHHHHHHHhhh
Q 014654 164 AEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------------------NWRVLAVLGVLPCTLLIPGL 217 (421)
Q Consensus 164 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l--------------------------~w~~~f~~~~~~~~~~~~~~ 217 (421)
.|++|+++|+++.+++..+..+|..+|+++++.+ +|+..|++.+++.++..+.+
T Consensus 198 ~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l 277 (633)
T TIGR00805 198 DDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF 277 (633)
T ss_pred hccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887543 16667888777776665555
Q ss_pred ccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhh
Q 014654 218 FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (421)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (421)
+++|++.+....+.+.++.++.. .. ...+ .. ........++....++.+++++.++...+...+...
T Consensus 278 ~~~p~~lp~~~~~~~~~~~~~~~--~~-~~~~--~~----~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~---- 344 (633)
T TIGR00805 278 FFFPKALPKEGKRVNVDVHETEK--LE-KSED--KS----RKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSL---- 344 (633)
T ss_pred HhCccccCCcccccchhhhhhhc--cc-cccc--cc----chhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHH----
Confidence 66665421000000000000000 00 0000 00 000000111223456677777655544443333333
Q ss_pred chHHHHHhHHHHHh-hcCCCchh--HHHHHHHH-HHHHHHHHHHHHhhccCC--hHHHHHhhHHHHHHHHH
Q 014654 298 GINGVLFYSSNIFA-NAGISSSN--VATFGLGV-VQVVATGVNTWLMDKAGR--RLLLLISSSGMAASFFL 362 (421)
Q Consensus 298 ~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~-~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~ 362 (421)
....+..|.|.+++ +.|+++.. .......+ +.+++.+++|+++||++. |+.+..+.+...++++.
T Consensus 345 ~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 345 AFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 34556667787776 46887666 33333343 567899999999999984 45666666555555443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=192.98 Aligned_cols=265 Identities=13% Similarity=0.043 Sum_probs=185.0
Q ss_pred HHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchH----HHHHHHHHHHHHHHHHHHhh
Q 014654 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRK----GSLMIAAVPNIIGWLIISFS 135 (421)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~~~~~~~~~~~~~~~~~~~ 135 (421)
+.+....+...|.+|.+.+|+|.|.+++|++.+++.++..+++++.|+++||+||| +.+.++..+. .......+
T Consensus 14 ~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~ 91 (382)
T PRK11128 14 FGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGA 91 (382)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhc
Confidence 33345567788999999999999999999999999999999999999999999984 3333222222 22333446
Q ss_pred cchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHH
Q 014654 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCT 211 (421)
Q Consensus 136 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~ 211 (421)
++++.+++.|++.|++.+...+...+++.++ +++|+++.+......++|..+||++++.+ +||..|++.++..+
T Consensus 92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~ 169 (382)
T PRK11128 92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVA 169 (382)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence 8899999999999999988888888877776 35678888888888889999999888766 99999987766544
Q ss_pred HHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHH
Q 014654 212 LLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLL 291 (421)
Q Consensus 212 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (421)
+..+...+.||+++ +++++ ++.++...+++++++++..+.......+.
T Consensus 170 ~~~~~~~~~~~~~~----~~~~~----------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 217 (382)
T PRK11128 170 SMLLGQLLRPTIMP----QGESR----------------------------QQESAGWPAWKALLKEPTVWRFLLCVSLL 217 (382)
T ss_pred HHHHHHHccCCCCC----ccccc----------------------------cccccccchHHHHHcChhHHHHHHHHHHH
Confidence 44443344454321 00000 00001123467778777666554444433
Q ss_pred HHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHH
Q 014654 292 VLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (421)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (421)
... ......+.+.+.++.|.++.. .......++.++..++.+++.||+++|+.+..+.+..+++.+++.
T Consensus 218 ~~~----~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~ 288 (382)
T PRK11128 218 QGS----HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMG 288 (382)
T ss_pred HHH----hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 332 222333445566677887655 444455677888889999999999999998888887777665544
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=194.11 Aligned_cols=246 Identities=15% Similarity=0.201 Sum_probs=193.1
Q ss_pred HhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhc--chhhHHHHHHhhhcchhh
Q 014654 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGV 154 (421)
Q Consensus 77 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~ 154 (421)
..+++++.+|.+++.+.++.|+.+++++.|+++||+|-|+++..+.++.++++++..++. +++.+++.|+++|++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 457899999999999999999999999999999999999999999999999999998864 556778999999999999
Q ss_pred hhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhhHHHHHHHhhhc-cccCChHHHH
Q 014654 155 ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLF-FIPESPRWLA 228 (421)
Q Consensus 155 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~w~~~f~~~~~~~~~~~~~~~-~~~e~~~~~~ 228 (421)
.+|....+..+|.|+++|++..++...+..+|.+++.++++.+ ||+++|++.+..+++..++++ +..|+|..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~-- 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK-- 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc--
Confidence 9999999999999999999999999999999998887766655 999999999988888777554 45666652
Q ss_pred HcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcch--hhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhH
Q 014654 229 KMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSR--RTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYS 306 (421)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
+... .++|.+.+++...+++. +.+.+++++++++..+. ..+..++...+...+..|.
T Consensus 223 -h~~i----------------s~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwa----i~~~~f~~~~~~~~l~~y~ 281 (466)
T KOG2532|consen 223 -HPNI----------------SEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWA----IWISAFGGNWGFYLLLTYL 281 (466)
T ss_pred -CCCC----------------CHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 1111 11111222222111111 14668999998865444 4444444444577788888
Q ss_pred HHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCC
Q 014654 307 SNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGR 345 (421)
Q Consensus 307 ~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~ 345 (421)
|.++++ +|++..+ +...+..+...+..+++|.++||..+
T Consensus 282 PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~ 323 (466)
T KOG2532|consen 282 PTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTF 323 (466)
T ss_pred hHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 988875 4776544 77778889999999999999999865
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=182.66 Aligned_cols=159 Identities=13% Similarity=0.215 Sum_probs=140.9
Q ss_pred cccccchHHHHhhhCCChhh-HHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHH
Q 014654 67 GYSSPTQAEIISDLKLTISE-FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGR 145 (421)
Q Consensus 67 ~~~~~~~~~i~~~~~~s~~~-~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 145 (421)
...+...|.+.+|+|+|.+| .|.+.++++.++++++++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R 122 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLME 122 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678899999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHH---hhhHHHHHHHhhhcc
Q 014654 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAV---LGVLPCTLLIPGLFF 219 (421)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~w~~~f~---~~~~~~~~~~~~~~~ 219 (421)
++.|++.|... ....++..|+|+++|+++.++...+..+|.+++++++..+ +||+.+. +......++++..++
T Consensus 123 ~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 123 VFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALF 201 (511)
T ss_pred HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999999999999999999999999999888766 8886543 444445555666777
Q ss_pred ccCChHH
Q 014654 220 IPESPRW 226 (421)
Q Consensus 220 ~~e~~~~ 226 (421)
+|..++-
T Consensus 202 LP~~~~s 208 (511)
T TIGR00806 202 LKRPKRS 208 (511)
T ss_pred CCCCchh
Confidence 8865553
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=187.64 Aligned_cols=257 Identities=11% Similarity=0.143 Sum_probs=163.2
Q ss_pred HHhhhhccccccchHH-HHhhhCCChhhHHHHHHHHHH-HHHHHHHHHHHhhhhhchHHHH-HHHHHHHHHHHHHHHhhc
Q 014654 60 IQFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANV-GAMVGAIASGQIAEYIGRKGSL-MIAAVPNIIGWLIISFSK 136 (421)
Q Consensus 60 ~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~-~~~~~~~~~~~~~~~~~~ 136 (421)
+..++..+...|.+|. +.+++|.+.+++|++.+...+ +..++.++.++ +||+||||.+ ..+.++.+++..+.++++
T Consensus 25 ~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 103 (393)
T PRK15011 25 FLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNR 103 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444555566665 678899999999999876655 55555655555 9999999875 455666678888888999
Q ss_pred chhhHHHHHHhhhcchhhhhccchhhhcccCCCCcc--hhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHH
Q 014654 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR--GSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (421)
Q Consensus 137 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~ 210 (421)
+++.+++.+.+.|...+...|...+++.|+.++++| +...++.+.+.++|.+++|++++.+ |||..|++.++..
T Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~ 183 (393)
T PRK15011 104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAF 183 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHH
Confidence 999887665555544557778888888888776655 3445788888889999999888665 9999999887766
Q ss_pred HHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhc-cchhHHHHHH
Q 014654 211 TLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK-RYWFPLMIGI 288 (421)
Q Consensus 211 ~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 288 (421)
++..+ ..+++||+++. +++ ++ + +.+ ...++ +..+......
T Consensus 184 ~~~~~~~~~~~~~~~~~---~~~-~~--------------------------~-~~~-------~~~~~~~~~~~~~~~~ 225 (393)
T PRK15011 184 IVCGVMVWLFLPSMRKE---LPL-AT--------------------------G-TLE-------APRRNRRDTLLLFVIC 225 (393)
T ss_pred HHHHHHHHhhcCccCCC---Ccc-cc--------------------------c-ccc-------ccccccccHHHHHHHH
Confidence 65544 45557776420 000 00 0 000 00011 1111111111
Q ss_pred HHHHHHhhhchHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHH
Q 014654 289 GLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 359 (421)
..... .......+.|.+++ +.|.++.. .......++.+++.++.|+++||++||+.+..+.....+.
T Consensus 226 ~~~~~----~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~ 295 (393)
T PRK15011 226 TLMWG----TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCF 295 (393)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 11111 12233345565554 46776655 3344445667788999999999999998776665544433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-22 Score=172.30 Aligned_cols=310 Identities=14% Similarity=0.105 Sum_probs=231.2
Q ss_pred HHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH
Q 014654 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII 132 (421)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 132 (421)
..+...+++.|+......+.+|.+++.++++..|.+++...++.|+.+.+++.|++.+|+|+|+.+++|+.++++++.+.
T Consensus 16 v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF 95 (422)
T COG0738 16 VLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALF 95 (422)
T ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34444558889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred H---hhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc------------
Q 014654 133 S---FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------------ 197 (421)
Q Consensus 133 ~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l------------ 197 (421)
. ...++..++.+-++.|.|.+...+....++....++++..+.+++.+..+++|.+++|++++.+
T Consensus 96 ~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~ 175 (422)
T COG0738 96 WPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAA 175 (422)
T ss_pred hhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHH
Confidence 4 5678999999999999999999999999999999999999999999999999999999998665
Q ss_pred -----------chHHHHHhhhHHHHHHHhhhcc--ccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhc
Q 014654 198 -----------NWRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASS 264 (421)
Q Consensus 198 -----------~w~~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (421)
.|+++|...+...++..+.... .|+.+.- ..++
T Consensus 176 ~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~----------------------------------~~~~ 221 (422)
T COG0738 176 QILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA----------------------------------APSL 221 (422)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc----------------------------------cccc
Confidence 3667777666555554443333 3433210 0000
Q ss_pred chhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhh
Q 014654 265 SRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMD 341 (421)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d 341 (421)
.+.......++++++..+...+..++....+ .....|.+.++.+ .|.+..+ .......++.++|++++.++.+
T Consensus 222 ~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~E----va~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~ 297 (422)
T COG0738 222 GASGSAGLSSLFQNKHLRLGVLAIFLYVGAE----VAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMS 297 (422)
T ss_pred cccccchHHHHHhChHHHHHHHHHHHHHhHH----HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111114677788877776666666666543 4455566666666 6776655 6677778899999999999999
Q ss_pred ccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCC
Q 014654 342 KAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELG 417 (421)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 417 (421)
|++..+.+.+..++..+.++...+. ...+.+.++.+.+.+.+ .+.|..++...+..|.+
T Consensus 298 ~~~~~k~Laf~a~~~ill~~~~~l~----------------~g~v~~~~l~~ig~F~s-imfPTIfslal~~l~~~ 356 (422)
T COG0738 298 RIKPEKYLAFYALIAILLLLAVALI----------------GGVVALYALFLIGLFNS-IMFPTIFSLALKNLGEH 356 (422)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHh----------------cChHHHHHHHHHHHHhH-HHHHHHHHHHHhccCcc
Confidence 9999888877665554444443332 11233444444444433 44677777777777743
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=213.15 Aligned_cols=305 Identities=13% Similarity=0.019 Sum_probs=202.8
Q ss_pred cchHHHHhhhCCChh--hHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH---HhhcchhhHHHHH
Q 014654 71 PTQAEIISDLKLTIS--EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFSKDSSFLFMGR 145 (421)
Q Consensus 71 ~~~~~i~~~~~~s~~--~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r 145 (421)
...+.+..+++.+.+ ..+++.+++.+++.++++++|+++||+|||++++++.++..++.++. ..+++++.++++|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 110 (1146)
T PRK08633 31 LIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVT 110 (1146)
T ss_pred HHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 344556666766543 47999999999999999999999999999999999887665555443 3457899999999
Q ss_pred HhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-c------------hHHHHHhhh-HHHH
Q 014654 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-N------------WRVLAVLGV-LPCT 211 (421)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-~------------w~~~f~~~~-~~~~ 211 (421)
+++|++.+...+...+++.|++++++|++++++.+.+..+|.++|+++++++ . |++.+.+.. ...+
T Consensus 111 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1146)
T PRK08633 111 FLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAV 190 (1146)
T ss_pred HHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888765 1 233333332 3333
Q ss_pred HHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHH
Q 014654 212 LLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLL 291 (421)
Q Consensus 212 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (421)
+.++..+.+||.|.....+.+.+ ...........++.+++++..+..++...+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (1146)
T PRK08633 191 LGLIFAYRLPKVPAAAPEVFDKK--------------------------KYLFPKLLWRNLKLLRSDRVLWLAIIGLSYF 244 (1146)
T ss_pred HHHHHHhcCcCCCCCCccccccc--------------------------ccccHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 33444556677653211000000 0000011123455566666555444333333
Q ss_pred HHHhhhchHHHHHhHHHHH-hhcCCCch-h--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHH
Q 014654 292 VLQQLSGINGVLFYSSNIF-ANAGISSS-N--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAF 367 (421)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~-~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (421)
.+. ......+.+.++ +..|.+.. . +.....+++.+++.++.+++.||+++++.+.++.++.+++++++....
T Consensus 245 ~~~----~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1146)
T PRK08633 245 WFI----SQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP 320 (1146)
T ss_pred HHH----HHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh
Confidence 322 222233344444 45687766 4 566667888899999999999999998888777776666655554321
Q ss_pred HhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 368 FLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
..+..++..++++++.+.. .+...+++.+..|++.||+
T Consensus 321 ---------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~rg~ 358 (1146)
T PRK08633 321 ---------------SLASVLVLFFLFGFSAGLF-IVPLNALIQFRAPEKELGK 358 (1146)
T ss_pred ---------------hHHHHHHHHHHHHHHHHHh-hHHHHHHHhhcCCccchhh
Confidence 1122333333344443332 3445788899999999885
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=186.65 Aligned_cols=270 Identities=16% Similarity=0.123 Sum_probs=191.4
Q ss_pred HHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhh-----chHH-HHHHHHHHHHHHHHH
Q 014654 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-----GRKG-SLMIAAVPNIIGWLI 131 (421)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~-~~~~~~~~~~~~~~~ 131 (421)
-++..+...+.....+|.+-++.|+|.+++|++..+... .+..+++|+++||+ |||| .+..+.++.+++...
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~ 84 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA 84 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence 345667777888888999999999999999999777765 69999999999999 8865 688888888888887
Q ss_pred HHhh---cchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhcc-----cchHHHH
Q 014654 132 ISFS---KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-----VNWRVLA 203 (421)
Q Consensus 132 ~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----l~w~~~f 203 (421)
.++. ++++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.. .+||..|
T Consensus 85 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f 164 (402)
T PRK11902 85 MAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTY 164 (402)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHH
Confidence 7776 3567777788888888889999999999999999999999999999999998888775533 3899999
Q ss_pred HhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhH
Q 014654 204 VLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (421)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (421)
++.++..++..+..++.||+++. +++.++ .+++....++++++++..+.
T Consensus 165 ~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~ 213 (402)
T PRK11902 165 LLMAGLMLAGALTTLWAPEPEVP---ARPPRS----------------------------LGEAVVGPLRDFFSRRGAWA 213 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCCccc---ccccch----------------------------hHHHHHHHHHHHHhCcCHHH
Confidence 99777666655555566765431 000000 00012234566777776665
Q ss_pred HHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchhHHHH--HHH-HHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHH
Q 014654 284 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATF--GLG-VVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360 (421)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 360 (421)
......+....... ......+.+.++.|+++.+.... ..+ ++.+++.++.+++.||+++|+.+..+..+..+..
T Consensus 214 ~l~~~~l~~~~~~~---~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~ 290 (402)
T PRK11902 214 LLLLIVLYKLGDAF---AGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSN 290 (402)
T ss_pred HHHHHHHHHhHHHH---HHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 55443333322111 11222334455578877663322 233 4578899999999999999988776666555544
Q ss_pred HHH
Q 014654 361 FLV 363 (421)
Q Consensus 361 ~~~ 363 (421)
+.+
T Consensus 291 l~~ 293 (402)
T PRK11902 291 LGY 293 (402)
T ss_pred HHH
Confidence 333
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=188.23 Aligned_cols=310 Identities=13% Similarity=0.029 Sum_probs=176.9
Q ss_pred cccccchHH-HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH---hhc-----c
Q 014654 67 GYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---FSK-----D 137 (421)
Q Consensus 67 ~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~-----~ 137 (421)
+...+.+|. +.+++|++..+.|++.+++.++..+++++.|+++||+|||++++++..+.+++..... .++ .
T Consensus 27 ~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (420)
T PRK09528 27 SSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNI 106 (420)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554 4556999999999999999999999999999999999999999887666554433211 111 1
Q ss_pred hhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhhHHHHHHH
Q 014654 138 SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLI 214 (421)
Q Consensus 138 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~w~~~f~~~~~~~~~~~ 214 (421)
.....++++..|.+.....+....+..+ . .++++...+.......+|..++|.+++.+ +|++.|++.++..++.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~ 184 (420)
T PRK09528 107 LLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILL 184 (420)
T ss_pred HHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHH
Confidence 1112233344443333333333333222 1 24567778888888888888888888766 89999998877776666
Q ss_pred hhhccc-cCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHH
Q 014654 215 PGLFFI-PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVL 293 (421)
Q Consensus 215 ~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (421)
+..++. +|+++....+ +++ .+++++.......+.++++..+...+.......
T Consensus 185 ~~~~~~~~~~~~~~~~~-~~~--------------------------~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~ 237 (420)
T PRK09528 185 VLLFFAKPDAPSTAKVA-NAL--------------------------GANASAVSLKDALALLKLPKFWFLVLYVIGVAC 237 (420)
T ss_pred HHHhcccccccchhhhc-cch--------------------------hcccccccHHHHHHHccCCCeEeehHHHHHHHH
Confidence 555544 3332210000 000 000011112234455666655443332222222
Q ss_pred HhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhc
Q 014654 294 QQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEG 371 (421)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (421)
.........+.|......+.+.+... .......+..+++.++.|++.||+++|+.+..+..+.+++.++++...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~---- 313 (420)
T PRK09528 238 FYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT---- 313 (420)
T ss_pred HHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc----
Confidence 11111112223333333333443333 445555677889999999999999999998888777777666554321
Q ss_pred cccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 372 FVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
.++..+....+.+..+... .+....+..|.+|++.|++
T Consensus 314 -----------~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~a~ 351 (420)
T PRK09528 314 -----------GPLEVSILKLLHAFEVPFL-LVGVFKYITLNFDVRLSAT 351 (420)
T ss_pred -----------cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccceee
Confidence 1122222222223332221 2334567888899988864
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-22 Score=184.35 Aligned_cols=274 Identities=15% Similarity=0.075 Sum_probs=170.7
Q ss_pred hhhhccccccchHHH-HhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH---hhc-
Q 014654 62 FGFTCGYSSPTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---FSK- 136 (421)
Q Consensus 62 ~~~~~~~~~~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~- 136 (421)
.....+...|.+|.. .+++|.++.+.|++.+++.++..+++++.|+++||+|||+.++.+....+++..... +.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (396)
T TIGR00882 14 YFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPL 93 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 334445566777654 567899999999999999999999999999999999999999887766655443321 111
Q ss_pred ----chhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhhHH
Q 014654 137 ----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLP 209 (421)
Q Consensus 137 ----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~w~~~f~~~~~~ 209 (421)
....+++.|++.|++.+...+....+..|..+ +++...+......++|..++|.+++.+ +||..|++.+..
T Consensus 94 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~ 171 (396)
T TIGR00882 94 LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGF 171 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHH
Confidence 23345667888888888888887777766433 334556666677778888888887765 999999988777
Q ss_pred HHHHHhhhcc-ccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHH
Q 014654 210 CTLLIPGLFF-IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (421)
Q Consensus 210 ~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (421)
.++..+..++ .||+|+.. + .+++ .+.++++.+..+.+++++++..+...+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~---~-~~~~-----------------------~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 224 (396)
T TIGR00882 172 ALILMLLLMFAKPKAPSSA---T-VANA-----------------------LGANASAFSLKLALELFRQRKFWMFVLYV 224 (396)
T ss_pred HHHHHHHHHHhCCCCchhh---h-hhcc-----------------------cccccCCCCHHHHHHHHcCCcHHHHHHHH
Confidence 6666544443 34443210 0 0000 00001111223456777776554433322
Q ss_pred HHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHH
Q 014654 289 GLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (421)
................|.+.+..+.+.+... .......+...++.+..+++.||+++|+.+.++..+.++...+..
T Consensus 225 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~ 302 (396)
T TIGR00882 225 VGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSS 302 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 2222111111112223333332222333222 445556677888889999999999999998888777766555433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=208.92 Aligned_cols=313 Identities=14% Similarity=0.044 Sum_probs=200.9
Q ss_pred HHHhhhCCCh-hhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHH---HHHHHHHHHHHHHhhcchhhHHHHHHhhhc
Q 014654 75 EIISDLKLTI-SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI---AAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (421)
Q Consensus 75 ~i~~~~~~s~-~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (421)
.+.++.+.+. ...++..+++.+.+.++++++|+++||+|||+++.. +.+...+..+.+...++++.++++|+++|+
T Consensus 41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi 120 (1140)
T PRK06814 41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGI 120 (1140)
T ss_pred HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444444433 447888999999999999999999999999997533 223333333334445899999999999999
Q ss_pred chhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhccccCChHH
Q 014654 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRW 226 (421)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~~~~e~~~~ 226 (421)
+.+...|...+++.+++++++|++++++.+++..+|.++||++++++ +|++.|+..++..++.++..+++|+++..
T Consensus 121 ~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1140)
T PRK06814 121 HSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA 200 (1140)
T ss_pred HHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 99999999999999999999999999999999999999999999887 89999866666666666666667665320
Q ss_pred HHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhH
Q 014654 227 LAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYS 306 (421)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
..+...+ .....+....++.+.+++..+...+...+..+. ...+..+.
T Consensus 201 --~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 248 (1140)
T PRK06814 201 --APDLKID--------------------------RNIIRSTITLLKYAKADKRIWLAILGISWFWLV----GAVVLSQL 248 (1140)
T ss_pred --CCCCeec--------------------------cchHHHHHHHHHHHhcCchHHHHHHHHHHHHHH----HHHHHHHh
Confidence 0000000 000001122456666666665555444443332 23333455
Q ss_pred HHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcc-----
Q 014654 307 SNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSR----- 378 (421)
Q Consensus 307 ~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 378 (421)
|.++++ .|.+... ......+++.++|.++.+++.|+..+++.+..+.++.+++.+.+.... ..........
T Consensus 249 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 327 (1140)
T PRK06814 249 PLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFAS-SSVPAEPAQLKSILV 327 (1140)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcc-cccccccccccchhh
Confidence 666554 5776554 566777889999999999999888777666555555554444333210 0000000000
Q ss_pred -hhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 379 -FYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 379 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
......+...+..++++++.+.. .+...+++.+..|++.||+
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~G~ 370 (1140)
T PRK06814 328 FLSKRHGWRILIDLFGLAAAGGLY-IVPLFAALQAWANPAHRAR 370 (1140)
T ss_pred hhcccccHHHHHHHHHHHHHHHHh-HHHHHHHHHhhCCccccee
Confidence 00011122333334444443333 3446789999999999985
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-22 Score=185.46 Aligned_cols=170 Identities=16% Similarity=0.279 Sum_probs=136.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 014654 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (421)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 125 (421)
++.+..+..+++......+.....+..++.+.+|+|- .+...|+.+.+.++.+++.++.|+++|.||||..++.+.++.
T Consensus 40 ~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~ 118 (599)
T PF06609_consen 40 PRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLG 118 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Confidence 3444444445554444555556666778899999994 578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHH
Q 014654 126 IIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRV 201 (421)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~ 201 (421)
.+|+++++.++|...++.+..+.|+|.|.... ....++|..|.|.|+...++...........++.++..+ +|||
T Consensus 119 vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw 197 (599)
T PF06609_consen 119 VVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRW 197 (599)
T ss_pred HhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcch
Confidence 99999999999999999999999999877765 455689999999998888777666555555666666544 8999
Q ss_pred HHHhhhHHHHHHHhhh
Q 014654 202 LAVLGVLPCTLLIPGL 217 (421)
Q Consensus 202 ~f~~~~~~~~~~~~~~ 217 (421)
.|++.++...+.++..
T Consensus 198 ~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 198 IFYIFIIWSGIALVLI 213 (599)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999887766665533
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=184.84 Aligned_cols=146 Identities=13% Similarity=0.127 Sum_probs=124.6
Q ss_pred chHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHHHHHHHHHHHHHHHhhcchhh-HHHHHHhhh
Q 014654 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDSSF-LFMGRLLEG 149 (421)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G 149 (421)
....+++++|.+.++.+++.+.+.....+..+++|+++|| +||||++..+.++++++.+.++++++... ++++|.++|
T Consensus 37 l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ 116 (489)
T PRK10207 37 LAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIA 116 (489)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 3445678899999999999999999999999999999999 99999999999999999999999877555 447899999
Q ss_pred cchhhhhccchhhhcccCCCC--cchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhh
Q 014654 150 FGVGVISYTVPVYIAEIAPQN--MRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (421)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~ 217 (421)
+|.|...+...+++.|.+|++ +|+++.+++..+.++|..+||.+++++ |||+.|++.++..++.++.+
T Consensus 117 ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~ 190 (489)
T PRK10207 117 VGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVY 190 (489)
T ss_pred hccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877 457789999999999998888877666 99999998655434333333
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-22 Score=183.16 Aligned_cols=304 Identities=11% Similarity=0.018 Sum_probs=189.4
Q ss_pred hcccc-ccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhch-HHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 014654 65 TCGYS-SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLIISFSKDSSFLF 142 (421)
Q Consensus 65 ~~~~~-~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~~~~~~~~~l~ 142 (421)
..+.. .+..+.+.+++|++.+++|++.+++.++..++++++|+++||+|| |+++.++.++.+++..+..+.++++.++
T Consensus 17 ~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (418)
T TIGR00889 17 IWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMF 96 (418)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 33444 344556778899999999999999999999999999999999965 7788888888888888888999999999
Q ss_pred HHHHhhhcchhhhhccchhhhc--------ccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHH
Q 014654 143 MGRLLEGFGVGVISYTVPVYIA--------EIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (421)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~ 210 (421)
+.|++.|++.+...+...++.. |......|.+..+. +|..++|.+++.+ .|+ +|++.++..
T Consensus 97 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~ 169 (418)
T TIGR00889 97 PVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT------IGFIAAMWAVSLLDIELSNI-QLYITAGSS 169 (418)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh------HHHHHHHHHHHHhcccchhH-HHHHHHHHH
Confidence 9999999987766665554432 22333345555543 4555555555444 344 355555544
Q ss_pred HHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHH
Q 014654 211 TLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGL 290 (421)
Q Consensus 211 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (421)
++..+..+++||+|+. +++++. ..++..+.+.++++|++..+...+..++
T Consensus 170 ~~~~~~~~~~~e~~~~---~~~~~~---------------------------~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 219 (418)
T TIGR00889 170 ALLGVFALTLPDIPVA---KSTAKM---------------------------SIKVMLGLDAFILFKNKRMAIFFFFSML 219 (418)
T ss_pred HHHHHHHhcCCCCCCC---cccccc---------------------------CHHHHhhhhHHHHhcCCCeeeHHHHHHH
Confidence 4444455677887531 000000 0000011223456666655544444333
Q ss_pred HHHHhhhchHHHHHhHHHHHhhcCCCc--------h--hHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHH
Q 014654 291 LVLQQLSGINGVLFYSSNIFANAGISS--------S--NVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360 (421)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~--~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 360 (421)
.... ......+.+.+.++.|.++ . ........+..+++.++.++++||+|+|+.+..+.++..++.
T Consensus 220 ~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~ 295 (418)
T TIGR00889 220 LGAP----LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRF 295 (418)
T ss_pred HHhH----HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 3221 1223344455555555432 1 255566677888999999999999999999999888877776
Q ss_pred HHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
.++.... .. + .......+..++.+.+++.. .+....+++|.+|++.||+
T Consensus 296 ~l~~~~~--~~--------~-~~~~~l~l~~~l~g~~~~~~-~~~~~~~i~~~~p~~~~g~ 344 (418)
T TIGR00889 296 GFFAYGD--PE--------Y-FGYALLFLSMIVYGCAFDFF-NISGSVFVEKEVPVHIRAS 344 (418)
T ss_pred HHHHHcC--cc--------h-hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHH
Confidence 5554310 00 0 01122223333444444322 4555678899999988764
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-22 Score=185.63 Aligned_cols=296 Identities=16% Similarity=0.163 Sum_probs=202.2
Q ss_pred HHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchh
Q 014654 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS 139 (421)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 139 (421)
+.+++.. ..+...+.++++++.+.++++|+.++......+..++.+.+.||+|.|.+.+.|.++.+++.++.++++++|
T Consensus 57 ~~~g~~~-~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~ 135 (509)
T KOG2504|consen 57 STDGLIN-SFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLW 135 (509)
T ss_pred hhhcchh-eehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3444333 344778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHH-HHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHH
Q 014654 140 FLFMG-RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI 214 (421)
Q Consensus 140 ~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~ 214 (421)
.+++. -++.|+|.|..+.....++..+|. |+|+.+.|+...+.++|..+-|.+...+ |||+.+++.+.+.+-.+
T Consensus 136 ~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~ 214 (509)
T KOG2504|consen 136 QLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVL 214 (509)
T ss_pred HHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 99887 799999999999999999998887 8999999999999999999888887776 99999888666555444
Q ss_pred hhhcc-ccCChHHHHHcCCHHHHHHHHH------------HHhCCCcchHH----HHHHHHHHHhhcc-hhhhHH----H
Q 014654 215 PGLFF-IPESPRWLAKMGMTEDFESSLQ------------VLRGFDTDISI----EVNEIKRSVASSS-RRTAIR----F 272 (421)
Q Consensus 215 ~~~~~-~~e~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~----~ 272 (421)
+.... -|..+..... .++..+... .....+..... .....++..++.. ...+.. .
T Consensus 215 ~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 291 (509)
T KOG2504|consen 215 VAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLD 291 (509)
T ss_pred HHHHHcCCCCcCCCch---hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhh
Confidence 43333 3322211000 000000000 00000000000 0000111000001 011111 2
Q ss_pred HHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCCh--HH
Q 014654 273 AELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRR--LL 348 (421)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~ 348 (421)
.++++++.+....+...+.. .++.....+++.+.++.|+++.+ ....+.++..++++++.|++.|+...+ .+
T Consensus 292 ~~ll~~~~fl~~~~~~~~~~----~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~ 367 (509)
T KOG2504|consen 292 LSLLKDPKFLLLALSNLFAY----LGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVL 367 (509)
T ss_pred HHHHcCchHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHH
Confidence 46666654444433333333 34666777888888888998776 667778999999999999999998743 34
Q ss_pred HHHhhHHHHHHHHHHH
Q 014654 349 LLISSSGMAASFFLVS 364 (421)
Q Consensus 349 ~~~~~~~~~~~~~~~~ 364 (421)
..++.+..+++...+.
T Consensus 368 ~~~~ll~~gl~~~~~p 383 (509)
T KOG2504|consen 368 FLLTLLIAGLARLFLP 383 (509)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555543333
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=180.95 Aligned_cols=159 Identities=13% Similarity=0.132 Sum_probs=135.6
Q ss_pred HHHhhhhccccccchHHH-Hhh--hCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHHHHHHHHHHHHHHHh
Q 014654 59 PIQFGFTCGYSSPTQAEI-ISD--LKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISF 134 (421)
Q Consensus 59 ~~~~~~~~~~~~~~~~~i-~~~--~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~ 134 (421)
.+...+......+.+|.+ .++ +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.++
T Consensus 19 ~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~ 98 (475)
T TIGR00924 19 ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM 98 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh
Confidence 334444444455566655 445 89999999999999999999999999999999 89999999999999999999999
Q ss_pred hcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCc---chhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhh
Q 014654 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM---RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGV 207 (421)
Q Consensus 135 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~ 207 (421)
+++++.++++|.+.|+|.|...+...++++|++|+++ |+.+.+++..+.++|..+||.+++.+ +|++.|++.+
T Consensus 99 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~ 178 (475)
T TIGR00924 99 SIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAA 178 (475)
T ss_pred cccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 9999999999999999999999999999999998754 88899999999999999999998776 8999999877
Q ss_pred HHHHHHHhhh
Q 014654 208 LPCTLLIPGL 217 (421)
Q Consensus 208 ~~~~~~~~~~ 217 (421)
+..++..+.+
T Consensus 179 ~~~~~~~l~~ 188 (475)
T TIGR00924 179 VGMVIGLLTF 188 (475)
T ss_pred HHHHHHHHHH
Confidence 6555444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=177.10 Aligned_cols=156 Identities=13% Similarity=0.142 Sum_probs=128.3
Q ss_pred ccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh------cchhhHHH
Q 014654 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS------KDSSFLFM 143 (421)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------~~~~~l~~ 143 (421)
+...+.+++++|+|.++.+++.++. .....++++.|++.||+|+|+++.++.+++++++++++++ ++++.+.+
T Consensus 47 sv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l 125 (591)
T PTZ00207 47 NLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSV 125 (591)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 3567789999999999999998874 4456778889999999999999999999999999999997 68999999
Q ss_pred HHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHH-HHHhhccc--chHHHHHhhhHHHHHHHh-hhcc
Q 014654 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIML-AYLLGLFV--NWRVLAVLGVLPCTLLIP-GLFF 219 (421)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~~~l--~w~~~f~~~~~~~~~~~~-~~~~ 219 (421)
.|++.|+|.+...+.....+.+++| ++||++.++...+.++|..+ +++...++ +|+..|++.++..++..+ .+.+
T Consensus 126 ~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~ 204 (591)
T PTZ00207 126 YNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVF 204 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999989999999997 78999999999999999975 55555555 888888776666555544 3333
Q ss_pred c--cCChHHH
Q 014654 220 I--PESPRWL 227 (421)
Q Consensus 220 ~--~e~~~~~ 227 (421)
+ |+.+++.
T Consensus 205 vr~p~~~~~~ 214 (591)
T PTZ00207 205 MRLPPFHLTG 214 (591)
T ss_pred eeCCcchhhc
Confidence 3 4444443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-23 Score=177.20 Aligned_cols=245 Identities=15% Similarity=0.120 Sum_probs=180.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccch
Q 014654 81 KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVP 160 (421)
Q Consensus 81 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 160 (421)
+-+++++|++.+.+.+.+.+.+++.|.+.||+|+|..+++|+++...+++++++.++++.++++|.+||+|.+...+...
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgl 181 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGL 181 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhH
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCc-chhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhccccCChHHHHHcCCHHH
Q 014654 161 VYIAEIAPQNM-RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTED 235 (421)
Q Consensus 161 ~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 235 (421)
++++|.+|+++ |++++|+.-.+.++|..+||.+|+.+ |.+.+|++.+++.++-..+.+++-|..+
T Consensus 182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~---------- 251 (464)
T KOG3764|consen 182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE---------- 251 (464)
T ss_pred HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc----------
Confidence 99999999655 79999999999999999999999988 9999999999888888776555433211
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCC
Q 014654 236 FESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGI 315 (421)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 315 (421)
.++....+...++.+++++.......... +++......-+.+..-..++...
T Consensus 252 -------------------------~~~~~~~~~~~~~~Ll~dP~I~~~agai~---~~n~~lafLePtlslwm~e~m~~ 303 (464)
T KOG3764|consen 252 -------------------------MDPDSTEQGTPMWSLLMDPYILLIAGAIT---FSNSSLAFLEPTLSLWMLETMFT 303 (464)
T ss_pred -------------------------cCccccccCccHHHHHhCchHhhhhcchh---hccchHHHhCcccHHHHHHhccC
Confidence 00001223345666777765443222221 11111111122222223344442
Q ss_pred Cchh--HHHHHHHHHHHHHHHHHHHHhhccC--ChHHHHHhhHHHHHHHHHH
Q 014654 316 SSSN--VATFGLGVVQVVATGVNTWLMDKAG--RRLLLLISSSGMAASFFLV 363 (421)
Q Consensus 316 ~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~ 363 (421)
+..+ ..+....+..+++..+.|.+.||++ |......+.+..++++...
T Consensus 304 p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~i 355 (464)
T KOG3764|consen 304 PGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPI 355 (464)
T ss_pred CCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchh
Confidence 2212 6667778899999999999999999 4333334444444333333
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=165.93 Aligned_cols=116 Identities=16% Similarity=0.279 Sum_probs=106.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccch
Q 014654 81 KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVP 160 (421)
Q Consensus 81 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 160 (421)
+.+..-.|.+.|.|.+...+.++.+|.++||+|||+++..|.+..++..++.+.++|+..++++|++.|+..|- ..+..
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHH
Confidence 33445579999999999999999999999999999999999999999999999999997777779999998855 45678
Q ss_pred hhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 161 VYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 161 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
++++|.+++|+|+++++..++++++|.++||.+|+++
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyl 179 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYL 179 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHH
Confidence 9999999999999999999999999999999999887
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-20 Score=174.41 Aligned_cols=307 Identities=13% Similarity=0.122 Sum_probs=211.2
Q ss_pred hccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh-----cchh
Q 014654 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----KDSS 139 (421)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~ 139 (421)
...+.....+.+..+..-|+..++++..+..+...+.++++|.++||++||++++.+.++.++..+..++. .+.+
T Consensus 25 G~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~ 104 (524)
T PF05977_consen 25 GDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPW 104 (524)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHH
Confidence 33344455666666777789999999999999999999999999999999999999988776655444332 4778
Q ss_pred hHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHh
Q 014654 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (421)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~ 215 (421)
.+++.-++.|++.+...|...+++.|..|+++...+.++.+...++..++||.+++.+ |-.+.|.+.++..++.+.
T Consensus 105 ~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~ 184 (524)
T PF05977_consen 105 LLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISIL 184 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999876 667788887766555544
Q ss_pred hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHh
Q 014654 216 GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQ 295 (421)
Q Consensus 216 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (421)
....++.+++ ++...+ +.-.++.+..++.+.+++..+..++...+..+.
T Consensus 185 ~l~~~~~~~~---~~~~~~---------------------------e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~- 233 (524)
T PF05977_consen 185 ALLRWKPPPP---PSSLPR---------------------------ERFFSALREGLRYVRSSPPLRSVLLRSFLFNLF- 233 (524)
T ss_pred HHHHcccccc---ccccch---------------------------hhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHh-
Confidence 4433332211 000000 000111223344444455444333322222221
Q ss_pred hhchHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhcc
Q 014654 296 LSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGF 372 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (421)
.......+|.+.+ ..|.++.. +.....+++.++|.++.+++.+|+++++++..+.+..+++++.+++..
T Consensus 234 ---~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~----- 305 (524)
T PF05977_consen 234 ---ASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP----- 305 (524)
T ss_pred ---hhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch-----
Confidence 1122233555554 35665555 667778999999999999999999998888888887777776666431
Q ss_pred ccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 373 VSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
..+.....+++.+++.... .....+...+..|.++||+
T Consensus 306 ----------~~~~~~~~l~l~G~~~~~~-~~~~~t~~Q~~~P~~~~GR 343 (524)
T PF05977_consen 306 ----------SFWLALIALFLAGAAWIIA-NSSLNTLVQLSVPDWVRGR 343 (524)
T ss_pred ----------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHhH
Confidence 2233334444444443332 3345678889999999985
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-19 Score=153.09 Aligned_cols=274 Identities=20% Similarity=0.195 Sum_probs=212.8
Q ss_pred HHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q 014654 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (421)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 128 (421)
++.+..+.+..+.-.-..+..+|.++++++|+|+|.+..|++.++..+...+.+++..+++.|+|.++.+..++++.+++
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444445666777788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHH
Q 014654 129 WLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLA 203 (421)
Q Consensus 129 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~w~~~f 203 (421)
..+-... +.+.++.+-.+.|.|.+......+.++.+.|| |+-+..+++|.+..++|..+++.+.-.+ +||...
T Consensus 91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL 168 (395)
T COG2807 91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL 168 (395)
T ss_pred HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence 9999887 77888999999999999999999999999999 7889999999999999888776655444 799998
Q ss_pred HhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhH
Q 014654 204 VLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (421)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (421)
.+-+.++++.++.++.-...++ ....+.+..+-..+++++.-|.
T Consensus 169 ~~WAl~allAl~~WlPq~~r~~------------------------------------~~~~~~~~~~~~~vw~~~~aW~ 212 (395)
T COG2807 169 GFWALLALLALLIWLPQALREQ------------------------------------AASIATKLVSVRKVWRSPLAWQ 212 (395)
T ss_pred HHHHHHHHHHHHHHhhhccccc------------------------------------ccccccccccccccccCchhHH
Confidence 8888888888776654321100 0001111122234566665554
Q ss_pred HHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhcc-CChHHHHHhhHHHHHHH
Q 014654 284 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKA-GRRLLLLISSSGMAASF 360 (421)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~ 360 (421)
+.+. +..+...++.+..|+|.++.+.|++..+ .......+..++..+....+.+|. ++|...+....++.++.
T Consensus 213 vtLf----mGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~ 288 (395)
T COG2807 213 VTLF----MGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL 288 (395)
T ss_pred HHHH----HHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 4443 3344445778888999999999998777 667777889999999999999875 45666666666666665
Q ss_pred HHHH
Q 014654 361 FLVS 364 (421)
Q Consensus 361 ~~~~ 364 (421)
+.+.
T Consensus 289 ~G~~ 292 (395)
T COG2807 289 VGLL 292 (395)
T ss_pred HHHH
Confidence 5554
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-19 Score=164.59 Aligned_cols=328 Identities=15% Similarity=0.154 Sum_probs=198.4
Q ss_pred hhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhh----hhchHHHHHHH-HHHHHHHHHHHHhhcch
Q 014654 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGRKGSLMIA-AVPNIIGWLIISFSKDS 138 (421)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~~~-~~~~~~~~~~~~~~~~~ 138 (421)
+..+...+..+.+.+++|.+..+.+++..+..+...+.+++.|+++| |+|||+.++++ .+...++.++.+++++.
T Consensus 18 ~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~ 97 (477)
T TIGR01301 18 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADI 97 (477)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchh
Confidence 33444456666678899999999999999999999999999999999 59999998875 66666676777777664
Q ss_pred h-----------------hHHHHHHhhhcchhhhhccchhhhcccCCCCcc--hhHhhHHHHHHHHHHHHHHHhhccc--
Q 014654 139 S-----------------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR--GSLGSVNQLSVTIGIMLAYLLGLFV-- 197 (421)
Q Consensus 139 ~-----------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~~~~~l-- 197 (421)
+ .++++-.+..++.....+...+++.|.+|+++| +.+.++.+...++|.++|+.+++..
T Consensus 98 ~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~ 177 (477)
T TIGR01301 98 GHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGL 177 (477)
T ss_pred hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3 222333344457777888889999999998865 5789999999999999998887542
Q ss_pred -----------------chHHHHHhhhHHHHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHH
Q 014654 198 -----------------NWRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKR 259 (421)
Q Consensus 198 -----------------~w~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (421)
+.|..|++.++..++..+ ..+..+|.|... +++..++ +
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~-~~~~~~~--------------------~--- 233 (477)
T TIGR01301 178 YKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG-SDDFINS--------------------E--- 233 (477)
T ss_pred HHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc-cccchhh--------------------h---
Confidence 456788887766665544 566678875310 0000000 0
Q ss_pred HHhhcchhhhHHHHHHhhc-----cchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhh--cCCC--------ch----hH
Q 014654 260 SVASSSRRTAIRFAELKRK-----RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN--AGIS--------SS----NV 320 (421)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~--------~~----~~ 320 (421)
..+.++.+....++++++. +..+.+.+..++.++ +.+.+.+|.+.+..+ ++.+ +. .+
T Consensus 234 ~~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~----a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~ 309 (477)
T TIGR01301 234 AAPPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWI----AWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAF 309 (477)
T ss_pred cccccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHH----HHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHH
Confidence 0000000111122333322 223333333333333 333333444433322 1211 11 13
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHhhHHHHHHHHHHHHHHHhhccc-cCC--cc---hhhHHHHHHHHHHHH
Q 014654 321 ATFGLGVVQVVATGVNTWLMDKAGR-RLLLLISSSGMAASFFLVSVAFFLEGFV-SED--SR---FYSILGILSLVGLVT 393 (421)
Q Consensus 321 ~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~---~~~~~~~~~~~~~~~ 393 (421)
.....++...+.+++..++.+|+|+ |+....+.++.++++....+.....+.. +.+ .. ......+..++....
T Consensus 310 ~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (477)
T TIGR01301 310 GLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAI 389 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHH
Confidence 4455566666777888899999985 6777888888888877776543311100 000 00 000111333444444
Q ss_pred HHHHHhcccccchhhhccccCCCCCCC
Q 014654 394 VVISFSLGVGAIPWVIMSEASELGKPN 420 (421)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~e~~p~~~rg 420 (421)
.++.++.. ..++++++++..|++.|+
T Consensus 390 ~Gi~~A~~-~siPfal~s~~~~~~~~~ 415 (477)
T TIGR01301 390 LGIPLAIT-YSIPFALASIRSSNLGAG 415 (477)
T ss_pred hhHHHHHH-HHHhHHHHHHHccccCCC
Confidence 45555433 678899999999966553
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-19 Score=168.95 Aligned_cols=142 Identities=16% Similarity=0.273 Sum_probs=119.4
Q ss_pred hHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHhhhc
Q 014654 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRLLEGF 150 (421)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~ 150 (421)
...+.+++|++.++.+++.+.+........+++|+++|| +|||+++..+.++.+++.+++++++ +.+.+.++|+++|+
T Consensus 45 ~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gi 124 (500)
T PRK09584 45 AVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAV 124 (500)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334678999999999999888877767777899999999 5999999999999999999998874 45667788999999
Q ss_pred chhhhhccchhhhcccCCCCc--chhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHH
Q 014654 151 GVGVISYTVPVYIAEIAPQNM--RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI 214 (421)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~ 214 (421)
+.|...+...+++.|++|+++ |..+.+++..+.++|..+||.+++++ |||+.|++.++..++.+
T Consensus 125 g~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 125 GNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV 194 (500)
T ss_pred hhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 999999999999999998654 45678888999999999999988776 89999998775444443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-20 Score=173.75 Aligned_cols=293 Identities=15% Similarity=0.122 Sum_probs=188.8
Q ss_pred chHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh----hchHH-HHHHHHHHHHHHHHHHHhhcc------hhh
Q 014654 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRKG-SLMIAAVPNIIGWLIISFSKD------SSF 140 (421)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~------~~~ 140 (421)
..+.+.+++|+++.++|++.++..+..++..++.|+++|| +|||| .++.+....+++.+++...++ ...
T Consensus 22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY 101 (437)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 3455778899999999999999999999999999999997 68744 566788888888888877664 345
Q ss_pred HHHHHHhhhcchhhhhccchhhhcccC-CCCcchhHhhHHHHHHHHHHHHHHHhh-----------cccchHHHHHhhhH
Q 014654 141 LFMGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLG-----------LFVNWRVLAVLGVL 208 (421)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~-----------~~l~w~~~f~~~~~ 208 (421)
+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+. ...+||+.+.+.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~ 181 (437)
T TIGR00792 102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLAL 181 (437)
T ss_pred HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHH
Confidence 667788889888887777788888887 468899999998887777765543332 12379999888777
Q ss_pred HHHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHH
Q 014654 209 PCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287 (421)
Q Consensus 209 ~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (421)
+.++..+ ..++.+|+++. +++ .++++.+....++.+++++..+.....
T Consensus 182 l~~~~~~~~~~~~~e~~~~-----~~~--------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (437)
T TIGR00792 182 IGVVSLIICFFGTKERYSE-----IPK--------------------------NIEKKLSLKQIFKALFKNDQLLILCLA 230 (437)
T ss_pred HHHHHHHHHHcCCEecCCC-----CCc--------------------------ccccCCCHHHHHHHHhCCHHHHHHHHH
Confidence 6665544 45566765310 000 000111123345666777655554443
Q ss_pred HHHHHHHhhhchHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHH
Q 014654 288 IGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (421)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (421)
..+.... ......+.+++.+. .+ ++.. .......++.+++.++.++++||+|+|+.+..+..+..++.+.+.
T Consensus 231 ~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 305 (437)
T TIGR00792 231 YLFYNLA----FNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFF 305 (437)
T ss_pred HHHHHHH----HHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 3333332 12222223333322 23 2222 344555788889999999999999999998888877776665544
Q ss_pred HHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCC
Q 014654 365 VAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASE 415 (421)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 415 (421)
... . ..+...+..++.+++.+.. .+..+++.+|..|
T Consensus 306 ~~~--~------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 341 (437)
T TIGR00792 306 FAG--S------------NLPLILVLIILAGFGQNFV-TGLVWALVADTVD 341 (437)
T ss_pred Hcc--h------------hHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhh
Confidence 311 0 1122222333333333322 4566778888766
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.3e-19 Score=162.80 Aligned_cols=268 Identities=12% Similarity=0.046 Sum_probs=176.3
Q ss_pred HHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHH--HHHHHHHHHHHHHHHH-HhhhhhchHHHHHHHHHH-HHHH
Q 014654 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIF--GSLANVGAMVGAIASG-QIAEYIGRKGSLMIAAVP-NIIG 128 (421)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~--~s~~~~~~~~~~~~~g-~l~dr~Grr~~~~~~~~~-~~~~ 128 (421)
..+...++..|...+...|.+|.+.+|.|.|.+++|++ .+...+...+.+++.+ +..||+||||.+++...+ .++.
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~ 83 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC 83 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH
Confidence 33444557788888999999999999999999999997 4677888888888884 479999999987665533 2222
Q ss_pred HHHHH-h--hcc-hhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhcc----cchH
Q 014654 129 WLIIS-F--SKD-SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF----VNWR 200 (421)
Q Consensus 129 ~~~~~-~--~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----l~w~ 200 (421)
....+ + ..+ ...++..-++.++..+...+...++..|..++++++...+....+..+|..+|+..... ++||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~ 163 (390)
T TIGR02718 84 LASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQR 163 (390)
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 22222 1 222 33444455566677777777788888888888888888888888888888888865443 4999
Q ss_pred HHHHhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccc
Q 014654 201 VLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRY 280 (421)
Q Consensus 201 ~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (421)
..|++.+...++..+..++++|+++. +.+ ++++...+.++.++++.
T Consensus 164 ~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~-------------------------------~~~~~~~~~~~~l~~~~ 209 (390)
T TIGR02718 164 PAFLLVACVPLASLVCVLWLKDRAVA---SPE-------------------------------APLARRASLFRFFRRPL 209 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcC---ccc-------------------------------cchhhHHHHHHHHcCcC
Confidence 99999887776655544444443210 000 00001123556677665
Q ss_pred hhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHH-HHHHHHHHHHHHHhhccCChHHHHHhhHHHH
Q 014654 281 WFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLG-VVQVVATGVNTWLMDKAGRRLLLLISSSGMA 357 (421)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 357 (421)
.+.......+.... ......+.+.++++.|+++.+ ......+ +..+++.++.|++.||+|+|+.+..+..+..
T Consensus 210 ~~~~~~~~~l~~~~----~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~ 285 (390)
T TIGR02718 210 AWSLLALALLSAMT----AVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAG 285 (390)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55444433333322 222233455566778998776 3333333 4566788999999999999998887766553
Q ss_pred H
Q 014654 358 A 358 (421)
Q Consensus 358 ~ 358 (421)
+
T Consensus 286 ~ 286 (390)
T TIGR02718 286 S 286 (390)
T ss_pred H
Confidence 3
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-17 Score=154.29 Aligned_cols=145 Identities=18% Similarity=0.198 Sum_probs=117.0
Q ss_pred cchHH-HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhh-chHHHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHh
Q 014654 71 PTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRLL 147 (421)
Q Consensus 71 ~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l 147 (421)
..+|. +.+++|.+..+.+.+.+.+.....++.+++|+++||+ |||++++++.++.+++.++.+..+ +...+.++..+
T Consensus 30 ~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~l 109 (493)
T PRK15462 30 ALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAI 109 (493)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 34444 4667899999999999999999999999999999999 999999999999999988776543 22334444445
Q ss_pred hhcchhhhhccchhhhcccCCCC--cchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHh
Q 014654 148 EGFGVGVISYTVPVYIAEIAPQN--MRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (421)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~ 215 (421)
.++|.|...+...++++|.+|++ +|..+.++.....++|..++|.+.+++ ||++.|.+.++..++.++
T Consensus 110 i~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li 183 (493)
T PRK15462 110 IVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLV 183 (493)
T ss_pred HHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH
Confidence 55666777777788999999875 688899999999999999999998877 899999887654444443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-16 Score=137.43 Aligned_cols=327 Identities=15% Similarity=0.077 Sum_probs=216.8
Q ss_pred ccCchhHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHH
Q 014654 42 RDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA 121 (421)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 121 (421)
.+..+++|++++..++-.+..++..-.++++.....+.|| +.+..-|+.-+|++.+....+++-|+.|++|-|....++
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llg 115 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLG 115 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHH
Confidence 3456788898888888889998888888888888888889 888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh------cchh--hHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHh
Q 014654 122 AVPNIIGWLIISFS------KDSS--FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193 (421)
Q Consensus 122 ~~~~~~~~~~~~~~------~~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 193 (421)
..+..+|..+-..+ +.++ ....+..+.+.+.-.....-..+..-||++++|..+..+-..+..+|..+|.++
T Consensus 116 t~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 116 TVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL 195 (480)
T ss_pred HHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence 99999999987765 3344 666788898888877777777888899999999999999999999999999888
Q ss_pred hccc----------chHH--HHHhhhHHHHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 014654 194 GLFV----------NWRV--LAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRS 260 (421)
Q Consensus 194 ~~~l----------~w~~--~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (421)
...+ .|.. .|+.......+.++ ..+..++.|+... ..+ .
T Consensus 196 ppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPp-----s~s-------------------~---- 247 (480)
T KOG2563|consen 196 PPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPP-----SAS-------------------Q---- 247 (480)
T ss_pred cceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-----chh-------------------H----
Confidence 7665 3554 34433333332222 2233333222000 000 0
Q ss_pred HhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCC--chhHHHHHHHHHHHHHHHHHHH
Q 014654 261 VASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGIS--SSNVATFGLGVVQVVATGVNTW 338 (421)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~g~ 338 (421)
....+.+-..+.+..++++.+....+....... .++...+.+...+...|++ ..........+++++++.++|.
T Consensus 248 ~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g----~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gi 323 (480)
T KOG2563|consen 248 AALQDASFPKSIKSCFKNRQFIILAICYGIGLG----LFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGI 323 (480)
T ss_pred hhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHH----HHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHh
Confidence 000012245567777777665554444443333 3444444444344444665 3337777778899999999999
Q ss_pred HhhccCChH-HHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhcccc
Q 014654 339 LMDKAGRRL-LLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEA 413 (421)
Q Consensus 339 l~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 413 (421)
+.||.+.-+ ...+......++...+........ .. +.+........++..+..|+..-+-.|.
T Consensus 324 i~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~----------~~--viv~~t~~~~g~~~~~~~Pig~ElgvE~ 387 (480)
T KOG2563|consen 324 IADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLG----------DS--VIVFTTCGLLGFFGTGYLPIGFELGVET 387 (480)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCC----------ce--EehhhhHHHHHHhhcCCCCcceeeeeee
Confidence 999987744 444444443333211111111110 11 1122222333455667778888777774
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.5e-16 Score=141.80 Aligned_cols=311 Identities=17% Similarity=0.165 Sum_probs=198.5
Q ss_pred hhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhc-hHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 014654 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG-RKGSLMIAAVPNIIGWLIISFSKDSSFL 141 (421)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (421)
.+..+...|..+.+-++.|.|..|+|.+.++..+...++++++|.++||++ +|+.+.+..++.++..+.....++++.+
T Consensus 15 f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~ 94 (400)
T PF03825_consen 15 FFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWL 94 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 344556668888899999999999999999999999999999999999986 5777777778777777777788899988
Q ss_pred HHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHH-----HHhhcccc---hHHHHHhhhHHHHHH
Q 014654 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLA-----YLLGLFVN---WRVLAVLGVLPCTLL 213 (421)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~-----~~~~~~l~---w~~~f~~~~~~~~~~ 213 (421)
++.-++..+......|...++..+...+ ++.-.+-.-...++|.+++ ..+.+..+ ....+++.+...++.
T Consensus 95 ~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll 172 (400)
T PF03825_consen 95 FVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLL 172 (400)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHH
Confidence 8888888888888888888888887752 2222233333334444333 22233222 224555555555555
Q ss_pred HhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHH
Q 014654 214 IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVL 293 (421)
Q Consensus 214 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (421)
....+.+|+.|.. +.. ++..++....+..+++|+|.....++...+...
T Consensus 173 ~~~~l~lp~~~~~---~~~----------------------------~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~ 221 (400)
T PF03825_consen 173 AGFALFLPKTPPK---RSA----------------------------KESVKKLLGLDALKLLKNPRFLVFLLAAFLIGI 221 (400)
T ss_pred HHHHHhCCCCccc---ccc----------------------------CCCcccccchHHHHHhcCccHHHHHHHHHHHHH
Confidence 4445567776520 000 000011112233467777766555544444333
Q ss_pred HhhhchHHHHHhHHHHHhhcC-CCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhh
Q 014654 294 QQLSGINGVLFYSSNIFANAG-ISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLE 370 (421)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~g-~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (421)
. ......|.+.++++.| .+... ....+..+..++.-...+++.+|+|.++++.++.+..++=..+++....
T Consensus 222 ~----~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~-- 295 (400)
T PF03825_consen 222 S----HAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD-- 295 (400)
T ss_pred H----HHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 2 3445556677788877 44333 4455667788899999999999999999999888887776666653210
Q ss_pred ccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 371 GFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
+ +.......+....+.+..|+.. ......|+.+..|++.|+|
T Consensus 296 ~--------~~~~~~~~~l~q~lhG~tf~~~-~~a~~~yi~~~~p~~~~at 337 (400)
T PF03825_consen 296 P--------WPFIVALQLLGQLLHGLTFGLF-HAASVRYIDRIAPPELRAT 337 (400)
T ss_pred C--------cHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHhCCccchHH
Confidence 0 0000111111112334444433 3344679999999999864
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-17 Score=153.42 Aligned_cols=293 Identities=13% Similarity=0.043 Sum_probs=177.9
Q ss_pred hHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh----hchH-HHHHHHHHHHHHHHHHHHhhcc------hhhH
Q 014654 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRK-GSLMIAAVPNIIGWLIISFSKD------SSFL 141 (421)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~------~~~l 141 (421)
...+.+++|++..++|.+.++..+..++..|+.|+++|| +||| +.++.+.+..+++.++....++ ...+
T Consensus 33 ~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~ 112 (444)
T PRK09669 33 AYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYA 112 (444)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 445778899999999999999999999999999999998 7875 5555677777777766555543 3455
Q ss_pred HHHHHhhhcchhhhhccchhhhcccC-CCCcchhHhhHHHHHHHHHHHHHHHhh----cc-------cchHHHHHhhhHH
Q 014654 142 FMGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLG----LF-------VNWRVLAVLGVLP 209 (421)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~----~~-------l~w~~~f~~~~~~ 209 (421)
++..++.+.+.........++..|+. ++++|++..++......+|..+++.+. .. .+|+..+.+.+++
T Consensus 113 ~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii 192 (444)
T PRK09669 113 CVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLL 192 (444)
T ss_pred HHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 56666777777677777788999988 568899888887777777766665432 11 1577777766655
Q ss_pred HHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHH
Q 014654 210 CTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (421)
Q Consensus 210 ~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (421)
.++..+ .++..+|.++. + ++++.+.....+.+++++.++......
T Consensus 193 ~~v~~~~~~~~~~e~~~~-----~-----------------------------~~~~~~~~~~~~~~~~n~~~~~l~~~~ 238 (444)
T PRK09669 193 GVVLFFCCFFMTKERYTP-----E-----------------------------VDNSSSVWKDLKLLLGNSQWRIMFIFN 238 (444)
T ss_pred HHHHHHHHhCCeEEecCC-----C-----------------------------CcCCCCHHHHHHHHhCCchHHHHHHHH
Confidence 544433 34444543210 0 001122344567777777766655443
Q ss_pred HHHHHHhhhchHHHHHhHHHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHH
Q 014654 289 GLLVLQQLSGINGVLFYSSNIFANAGISSSN-VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAF 367 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (421)
.+.............+|..+.. +..+.. .......+..+++.++.+++.||+|+|+.+..+.+...++.+.+...
T Consensus 239 ~~~~~~~~~~~~~~~y~~~~~~---~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~- 314 (444)
T PRK09669 239 VVLLTAVVTRGGATLYYVNYVL---LRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI- 314 (444)
T ss_pred HHHHHHHHHHhhhhheeeeeec---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-
Confidence 3332222111111222222211 221111 33334456777888999999999999998887765554433222211
Q ss_pred HhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCC
Q 014654 368 FLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASEL 416 (421)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 416 (421)
.+ ...+...+..++.+++.+ ...++.+++++|..+.
T Consensus 315 -~~-----------~~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~ 350 (444)
T PRK09669 315 -PP-----------SNVWLIFALNILFNFIQN-LTTPLQWSMFSDVVDY 350 (444)
T ss_pred -Cc-----------chHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhh
Confidence 00 011222333334444444 3357788899988863
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-17 Score=152.69 Aligned_cols=297 Identities=16% Similarity=0.181 Sum_probs=203.9
Q ss_pred chHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhh----hhchHHHHH-HHHHHHHHHHHHHHhh-c-------ch
Q 014654 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGRKGSLM-IAAVPNIIGWLIISFS-K-------DS 138 (421)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~-~~~~~~~~~~~~~~~~-~-------~~ 138 (421)
..+.+.+.+|+++..+|.+..+..+..++..|+.|.++| |+||||.++ .|.+..+++.+++... + ..
T Consensus 24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~ 103 (428)
T PF13347_consen 24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKL 103 (428)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence 345577888999999999999999999999999999999 899877665 5778888877777665 4 22
Q ss_pred hhHHHHHHhhhcchhhhhccchhhhcccCC-CCcchhHhhHHHHHHHHHHHHHHHhhccc-----------chHHHHHhh
Q 014654 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----------NWRVLAVLG 206 (421)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----------~w~~~f~~~ 206 (421)
..+.+..++..++.........++..|..+ +++|.+..+.-.....+|..+...+...+ +|++..++.
T Consensus 104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~ 183 (428)
T PF13347_consen 104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVL 183 (428)
T ss_pred HHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHH
Confidence 345667777788888999899999999997 57899999998888888876444443322 488877776
Q ss_pred hHHHHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHH
Q 014654 207 VLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285 (421)
Q Consensus 207 ~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (421)
+++.++..+ ..+..+|+++ +...++++.+.+..++.+++++.++...
T Consensus 184 ~iv~~v~~~i~~~~~ke~~~--------------------------------~~~~~~~~~~~~~~~~~~~~nr~~~~l~ 231 (428)
T PF13347_consen 184 AIVGLVFFLITFFFVKERSV--------------------------------EVTEQEKKISLRDSLRSLFRNRPFRILL 231 (428)
T ss_pred HHHHHHHhhhhhheeeeccc--------------------------------cccccccccccccchhhhcccchHHHHH
Confidence 666665544 4455666211 0011122233445677888887777666
Q ss_pred HHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHH
Q 014654 286 IGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN-VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (421)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (421)
....+.............+|..+.. |.+... .......+..+++.++.++++||+|+|+.+..+..+.+++.+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~y~~~~vl---~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~ 308 (428)
T PF13347_consen 232 LAFFLQWLAFALMNTFLPYYFTYVL---GNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLF 308 (428)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHh---cCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHH
Confidence 6555554443333333334333333 333222 555566788899999999999999999999999998888877766
Q ss_pred HHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCC
Q 014654 365 VAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELG 417 (421)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 417 (421)
+... ...+...+...+.+.+.+.. ..+++++.+|+.+.+
T Consensus 309 ~~~~-------------~~~~~~~i~~~l~gi~~~~~-~~~~~a~~ad~id~~ 347 (428)
T PF13347_consen 309 FLGP-------------GSPWLVLILFILAGIGYGAF-FVIPWAMLADVIDYD 347 (428)
T ss_pred HHHh-------------hhHHHHHHHHHHhHhhhccc-ccccccccccchhhH
Confidence 5431 11233444444445554433 577788999988754
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-16 Score=149.97 Aligned_cols=298 Identities=11% Similarity=0.033 Sum_probs=175.4
Q ss_pred HHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhh----hhch-HHHHHHHHHHHHHHHHHHHhhcc------hhhHH
Q 014654 74 AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGR-KGSLMIAAVPNIIGWLIISFSKD------SSFLF 142 (421)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Gr-r~~~~~~~~~~~~~~~~~~~~~~------~~~l~ 142 (421)
..+.+.+|+++..+|.+..+..+.-++..|+.|.++| |+|| |+.++.+.+..+++.+++...++ +..++
T Consensus 31 ~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~ 110 (473)
T PRK10429 31 YYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVC 110 (473)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 3456677999999999999999999999999999999 6699 55566677777777666644332 23455
Q ss_pred HHHHhhhcchhhhhccchhhhcccC-CCCcchhHhhHHHHHHHHHHHHHHHhhc----cc-------chHHHHHhhhHHH
Q 014654 143 MGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLGL----FV-------NWRVLAVLGVLPC 210 (421)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~----~l-------~w~~~f~~~~~~~ 210 (421)
+..++.+++.....+...++..|.. ++++|.+..++-.....+|..+.+.+.. .+ +|+....+.++..
T Consensus 111 ~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~ 190 (473)
T PRK10429 111 VTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFF 190 (473)
T ss_pred HHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence 5667778888888888889999998 5899999888866666665444332221 11 4666655555544
Q ss_pred HHHH-hhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHH
Q 014654 211 TLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIG 289 (421)
Q Consensus 211 ~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (421)
++.. +.++..+|.++. .+ + +..++++.+.+..++.+++++.++..+....
T Consensus 191 ~~~~~~~~~~~~e~~~~----~~-~------------------------~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~ 241 (473)
T PRK10429 191 IVSTIITLRNVHEVYSS----DN-Q------------------------VSAEGSHLTLKDIVALIYKNDQLSCLLGMAL 241 (473)
T ss_pred HHHHHHHHcCceecCCc----cc-c------------------------ccccccCCCHHHHHHHHhcCHHHHHHHHHHH
Confidence 4433 344446665310 00 0 0000111223344555666655444443333
Q ss_pred HHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHH
Q 014654 290 LLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAF 367 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (421)
+.... ......+.+++.+....+... .......++.+++.++.+++.||+|+|+.+..+..+..++.+.+....
T Consensus 242 ~~~~~----~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~ 317 (473)
T PRK10429 242 AYNIA----SNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMG 317 (473)
T ss_pred HHHHH----HHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 33221 222223333333332222222 344445678889999999999999999998877776555544443211
Q ss_pred HhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCC
Q 014654 368 FLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASE 415 (421)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 415 (421)
.... ...+..++...+.+.+.+.. .+..+++++|..+
T Consensus 318 ~~~~----------~~~~~~~i~~~l~g~~~~~~-~~~~~am~ad~id 354 (473)
T PRK10429 318 LAAP----------HNALLIVIAGILLNIGTALF-WVLQVIMVADTVD 354 (473)
T ss_pred ccCc----------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhh
Confidence 1110 01122223333333443332 4566778888865
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.9e-17 Score=151.28 Aligned_cols=338 Identities=12% Similarity=0.005 Sum_probs=195.1
Q ss_pred HHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhc-----hHHHHHHHHHHHH-HHHHH
Q 014654 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG-----RKGSLMIAAVPNI-IGWLI 131 (421)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~~~-~~~~~ 131 (421)
.++..|+..-......+.+.+++|+++++++...+...+...+-.+ +|+++||++ ||+.++++.++.+ ++...
T Consensus 34 ~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~ 112 (468)
T TIGR00788 34 VLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGL 112 (468)
T ss_pred HHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHh
Confidence 3455666633334456667778999999999999999999999665 999999998 7777777776663 43333
Q ss_pred HHhhcchhhHH-HHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHH---HHHHHHHHHHHHHhhccc----chHHHH
Q 014654 132 ISFSKDSSFLF-MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN---QLSVTIGIMLAYLLGLFV----NWRVLA 203 (421)
Q Consensus 132 ~~~~~~~~~l~-~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~---~~~~~~G~~~~~~~~~~l----~w~~~f 203 (421)
.+..++..... +..++.+++.+...+...++..|..+ +++....+.. .....+|..+|+.+++.+ +|+..|
T Consensus 113 l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f 191 (468)
T TIGR00788 113 LPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILF 191 (468)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHH
Confidence 33345544444 47899999999999999999999998 5554433333 223346777776666554 899999
Q ss_pred HhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhH
Q 014654 204 VLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (421)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (421)
++.+...++..+..++++|++.....+.++++. .. .. .......+..++........++++..+.
T Consensus 192 ~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~---------~~-~~-----~~~~~~~~~~~~~~~~l~~~l~~~~i~~ 256 (468)
T TIGR00788 192 LITAALLLLQLFVSNLSKERRAFVRPRIGTYLE---------MN-MA-----LLTLGVLANVKVQILGLRGAIQLLEIAK 256 (468)
T ss_pred HHHHHHHHHHHHHHHhcccccccccccccccch---------hh-hh-----hhhhhHHHHHHHHHHHHHHHHhcHHHHH
Confidence 988777776666667778763100000000000 00 00 0000000000111122333344544443
Q ss_pred HHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHH
Q 014654 284 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFF 361 (421)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 361 (421)
.++...+.+... ... ....|. ......|+++.. ......+++.+++..+.+++.+|++.|+.+.++.++.+++.+
T Consensus 257 ~l~fifl~~~~~-~~~-~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~ 333 (468)
T TIGR00788 257 PLIFIFLSYANL-PGA-SGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSL 333 (468)
T ss_pred HHHHHHHHHhhc-CCC-CceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHh
Confidence 333222211111 111 111111 111345777766 566667899999999999999999999998888887777664
Q ss_pred HHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 362 LVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
.........+..... . ..+.......+..++++....|. ..++++..|++.+|+
T Consensus 334 ~~~~l~~~~~~~~gi-~----~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt 387 (468)
T TIGR00788 334 FDLILVKRWNLAFGI-S----DEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESS 387 (468)
T ss_pred CceeeeeccccccCC-C----CeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceeh
Confidence 432211110000000 0 00112222233344445554444 778999999998875
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=155.16 Aligned_cols=174 Identities=12% Similarity=0.078 Sum_probs=132.3
Q ss_pred cchHHH-HhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHH---HHhhcchhhHHHHHH
Q 014654 71 PTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI---ISFSKDSSFLFMGRL 146 (421)
Q Consensus 71 ~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~r~ 146 (421)
...|.+ ++++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+. ...+++...++++++
T Consensus 271 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (490)
T PRK10642 271 TYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLL 350 (490)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345554 4668999888888888899999999999999999999999988877654433322 223456677788899
Q ss_pred hhhcchhhhhccchhhhcccCCCCcchhHhhH-HHHHHHHHHHHHHHhhccc-----chHHHHHhhhHHHHHHHhhhccc
Q 014654 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFI 220 (421)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l-----~w~~~f~~~~~~~~~~~~~~~~~ 220 (421)
+.|++.+........++.|.+|++.|+.++++ ++.+ .++..++|.+.+.+ +|+.++++..+.+++.++..+++
T Consensus 351 ~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~-~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 351 MLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNIS-VLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 99988777777778888999999999999987 4544 44456666666554 47777766666666666666778
Q ss_pred cCChHHHHHc-----CCHHHHHHHHHHHhC
Q 014654 221 PESPRWLAKM-----GMTEDFESSLQVLRG 245 (421)
Q Consensus 221 ~e~~~~~~~~-----~~~~~~~~~~~~~~~ 245 (421)
||+|+|+.++ ++.||+++.+++++.
T Consensus 430 pes~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 430 KETANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred ccccCCCCCCccccccchhhHHHHhhcccc
Confidence 9999987755 888999999988873
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-17 Score=135.50 Aligned_cols=146 Identities=15% Similarity=0.171 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHHHHHHH
Q 014654 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPN 125 (421)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~ 125 (421)
++.+.++.+|+..|-..+.....+....+...|.+++.++..++.++|..-..+.+++.|++.|| +|.|..-++-++..
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv 120 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV 120 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence 44556666666668888888888888888888999999999999999999999999999999996 68877666666666
Q ss_pred HHHHHHHH---hhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHH
Q 014654 126 IIGWLIIS---FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL 192 (421)
Q Consensus 126 ~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 192 (421)
.+|.++++ ..+.+|.++.+|++.|+|.-....+-..++.-|+..|+.+.++|+......+|..+-..
T Consensus 121 ~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~ 190 (459)
T KOG4686|consen 121 FLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFL 190 (459)
T ss_pred HHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeee
Confidence 67777665 46899999999999999998888889999999999999999999999888888765433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-15 Score=134.60 Aligned_cols=294 Identities=16% Similarity=0.178 Sum_probs=194.1
Q ss_pred HHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh----hchHH-HHHHHHHHHHHHHHHHHhhcc------hhhHHH
Q 014654 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRKG-SLMIAAVPNIIGWLIISFSKD------SSFLFM 143 (421)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~------~~~l~~ 143 (421)
.+.+..|+++..+|.+..+.-+--++.-|+.|.++|| +||+| .++.+.+..++.+.++-.+++ ....++
T Consensus 38 fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~v 117 (467)
T COG2211 38 FYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALV 117 (467)
T ss_pred HHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHH
Confidence 4677789999999999999999999999999999995 88755 455677888998888887763 445667
Q ss_pred HHHhhhcchhhhhccchhhhcccCC-CCcchhHhhHHHHHHHHHHHHHHHhh----ccc-------chHHHHHhhhHHHH
Q 014654 144 GRLLEGFGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLG----LFV-------NWRVLAVLGVLPCT 211 (421)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~----~~l-------~w~~~f~~~~~~~~ 211 (421)
.-.+.+++.........++..|..+ +++|.+..++-+....+|..+...+. ..+ ||+....+.+++.+
T Consensus 118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~ 197 (467)
T COG2211 118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGV 197 (467)
T ss_pred HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHH
Confidence 7889999999999999999999986 78999999999988888866543332 222 67766666555555
Q ss_pred HHHhh-hccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHH
Q 014654 212 LLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGL 290 (421)
Q Consensus 212 ~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (421)
+..+. ++-.+|.+.. +. ..++..+.+.+..+..+++++.++...+...+
T Consensus 198 i~~l~~~~~v~ER~~~---~~---------------------------~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~ 247 (467)
T COG2211 198 ILLLFCFFNVKERVVE---TQ---------------------------PTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLL 247 (467)
T ss_pred HHHHHHHHHhhcccCc---cc---------------------------cCcccccccHHHHHHHHHccchHHHHHHHHHH
Confidence 55443 3335554320 00 00001123334455667777766655553333
Q ss_pred HHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHH
Q 014654 291 LVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFF 368 (421)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (421)
.............||..+.+ |.++.. ........+.+++.++..++.+|+|+|+++..+.++..++.+++.+..
T Consensus 248 ~~~~~~i~~s~~~yy~~y~l---g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~- 323 (467)
T COG2211 248 LFIAFNIRGSIMVYYVTYVL---GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP- 323 (467)
T ss_pred HHHHHHHHhhhhheeEEEEc---CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc-
Confidence 33322222222233333222 443333 344455666667799999999999999999999888888877776543
Q ss_pred hhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCC
Q 014654 369 LEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASE 415 (421)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 415 (421)
. ....+.++..++...+.+.. .++++++++|...
T Consensus 324 -~-----------~~~~l~~~~~~i~~~g~~~~-~~l~wam~~d~vD 357 (467)
T COG2211 324 -A-----------GSVVLIVVALIIAGVGTGIA-NPLPWAMVADTVD 357 (467)
T ss_pred -C-----------cchHHHHHHHHHHHHHhhcc-ccccHHHhcchhh
Confidence 1 11233344444444554433 7888999988764
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-14 Score=133.22 Aligned_cols=245 Identities=12% Similarity=0.063 Sum_probs=158.7
Q ss_pred HHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh----hchHHHHH-HHHHHHHHHHHHHHhhcc------hhhHH
Q 014654 74 AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRKGSLM-IAAVPNIIGWLIISFSKD------SSFLF 142 (421)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~~~-~~~~~~~~~~~~~~~~~~------~~~l~ 142 (421)
..+.+..|+++..+|.+..+.-+.-++..|+.|.++|| +||||.++ ++.+..+++.+++...++ ...+.
T Consensus 34 ~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~ 113 (460)
T PRK11462 34 FFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAA 113 (460)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence 34667789999999999999999999999999999995 79866555 566777777776655543 33455
Q ss_pred HHHHhhhcchhhhhccchhhhcccCC-CCcchhHhhHHHHHHHHHHHHHHHhhcc----c-------chHHHHHhhhHHH
Q 014654 143 MGRLLEGFGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLF----V-------NWRVLAVLGVLPC 210 (421)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~----l-------~w~~~f~~~~~~~ 210 (421)
+.-++..++.........++..|..+ +++|++..++...+..+|..+++.+... + +|+....+.+++.
T Consensus 114 ~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~ 193 (460)
T PRK11462 114 ITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVA 193 (460)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence 66677788888888888899999987 7899999999988888887666544321 1 4666555555544
Q ss_pred HHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHH
Q 014654 211 TLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIG 289 (421)
Q Consensus 211 ~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (421)
++... .+...+|.++. +.++.+.+...+..++++.++.+.....
T Consensus 194 ~i~~~i~~~~~kE~~~~-----------------------------------~~~~~~~~~~l~~~~~Nk~~~~l~~~~~ 238 (460)
T PRK11462 194 FMMLAFCFFTTKERVEA-----------------------------------PPTTTSMREDLRDIWQNDQWRIVGLLTI 238 (460)
T ss_pred HHHHHHHHhcceeccCC-----------------------------------CccCCCHHHHHHHHhCChHHHHHHHHHH
Confidence 44433 33334443210 0001112334566677766655544333
Q ss_pred HHHHHhhhchHHHHHhHHHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHH
Q 014654 290 LLVLQQLSGINGVLFYSSNIFANAGISSSN-VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGM 356 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 356 (421)
+.............+|..+++ +..... .......++.+++.+++++++||+++|+.+..+....
T Consensus 239 ~~~~~~~~~~~~~~y~~~y~~---g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~ 303 (460)
T PRK11462 239 FNILAVCVRGGAMMYYVTWIL---GTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALL 303 (460)
T ss_pred HHHHHHHHHHhHhhhhhhhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 333322222223333333332 322222 3455667788899999999999999998876544433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-14 Score=135.51 Aligned_cols=291 Identities=13% Similarity=0.138 Sum_probs=166.0
Q ss_pred HHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhh----chHHHH-HHHHHHHHHHHHHHHhhc-----c--hhhH
Q 014654 74 AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI----GRKGSL-MIAAVPNIIGWLIISFSK-----D--SSFL 141 (421)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~----Grr~~~-~~~~~~~~~~~~~~~~~~-----~--~~~l 141 (421)
+.+++.+|++..++|.+.+...+..++..++.|+++||. ||||.+ ..+.+...+..++....+ + ...+
T Consensus 33 ~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (448)
T PRK09848 33 SYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYA 112 (448)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHH
Confidence 356777899999999999999999999999999999996 777755 555554544444432111 1 2234
Q ss_pred HHHHHhhhcchhhhhccchhhhcccCC-CCcchhHhhHHHHH-----HHHHHHHHHHhhccc------chHHHHHhhhHH
Q 014654 142 FMGRLLEGFGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLS-----VTIGIMLAYLLGLFV------NWRVLAVLGVLP 209 (421)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~-----~~~G~~~~~~~~~~l------~w~~~f~~~~~~ 209 (421)
++.-.+.+++.+...+...++..+... +++|.+..++-..+ ..++..++|.++... +|.....+.++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~ 192 (448)
T PRK09848 113 YLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIA 192 (448)
T ss_pred HHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 445667788888888777777777665 46788776665433 334555666665433 121111122222
Q ss_pred HHHH-HhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHH
Q 014654 210 CTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (421)
Q Consensus 210 ~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (421)
.++. .+.....||++.. +.++......++.+++++.+....+..
T Consensus 193 ~~~~~~~~~~~~~e~~~~-----------------------------------~~~~~~~~~~~~~l~~n~~f~~~~~~~ 237 (448)
T PRK09848 193 GMVLYFICFKSTRENVVR-----------------------------------IVAQPSLKISLQTLKRNRPLFMLCIGA 237 (448)
T ss_pred HHHHHHHHHcCcEeccCC-----------------------------------CccCCCHHHHHHHHhCCchHHHHHHHH
Confidence 2222 2223334554210 001112234467788877665554444
Q ss_pred HHHHHHhhhchHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHH
Q 014654 289 GLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (421)
.+.... ........+++.++ .|.++.. .......++.+++.++.+++.||+++|+.+.++.++..++.+.+..
T Consensus 238 ~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~ 313 (448)
T PRK09848 238 LCVLIS----TFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW 313 (448)
T ss_pred HHHHHH----HHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 443332 22223334444433 3543333 2222234567788999999999999999999988877777655542
Q ss_pred HHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCC
Q 014654 366 AFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELG 417 (421)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 417 (421)
. +. ...+.......+.+.+.+.. .+...++.+|..|.+
T Consensus 314 ~---~~----------~~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~~~ 351 (448)
T PRK09848 314 V---SV----------WSLPVALVALAIASIGQGVT-MTVMWALEADTVEYG 351 (448)
T ss_pred c---Cc----------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhh
Confidence 1 10 01122223333344444333 455677777877653
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=132.34 Aligned_cols=174 Identities=20% Similarity=0.263 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHhhhhccccccchHHHHhh--hCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhch-HHHHHHHHHHHHH
Q 014654 51 CVLVVALGPIQFGFTCGYSSPTQAEIISD--LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNII 127 (421)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~~ 127 (421)
.+.++.+.+|+.+...+++.+..-+..++ .+.+.+..|++.++..+|.+++++..|++..|.+. |+.++.+.++..+
T Consensus 35 si~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~ 114 (488)
T KOG2325|consen 35 SIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAII 114 (488)
T ss_pred hHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHH
Confidence 33445555667777778777776666666 66677789999999999999999999999999997 8889999999999
Q ss_pred HHHHH-Hh---hc-chhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----
Q 014654 128 GWLII-SF---SK-DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----- 197 (421)
Q Consensus 128 ~~~~~-~~---~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----- 197 (421)
|+++. ++ .+ ..+.++++|++.|+|.|. ....-+|+++....++|.++++....+..+|.++||.++..+
T Consensus 115 g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~ 193 (488)
T KOG2325|consen 115 GNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGE 193 (488)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcC
Confidence 99988 33 23 678899999999998754 456788999999999999999999998889988888887554
Q ss_pred -c-----------hHHHHHhhhHHHHHHHh-hhccccCChH
Q 014654 198 -N-----------WRVLAVLGVLPCTLLIP-GLFFIPESPR 225 (421)
Q Consensus 198 -~-----------w~~~f~~~~~~~~~~~~-~~~~~~e~~~ 225 (421)
| +..+-|+.++..++.++ ...+++|.++
T Consensus 194 ~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 194 KGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred CceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 1 23455666666666655 4445666644
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-13 Score=120.87 Aligned_cols=340 Identities=13% Similarity=0.091 Sum_probs=199.7
Q ss_pred hHHHHhhhC----CChhhHHHHHHHHHHHHHHHHHHHHHhhhhh-chHHHHHHHHHHHHHHHHHHHhhc--chhhHHHHH
Q 014654 73 QAEIISDLK----LTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGR 145 (421)
Q Consensus 73 ~~~i~~~~~----~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r 145 (421)
.-.+..+++ .++++..-+.+.|..-.-+..+++|+++||+ |+|+.++.|.++..+|.++.+.+. +...+.++-
T Consensus 45 ~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L 124 (498)
T COG3104 45 ILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGL 124 (498)
T ss_pred HHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHH
Confidence 344555555 9999998888888888889999999999995 999999999999999999999884 788999999
Q ss_pred HhhhcchhhhhccchhhhcccCCCC--cchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhcc
Q 014654 146 LLEGFGVGVISYTVPVYIAEIAPQN--MRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (421)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~~ 219 (421)
.+.++|.|..-+...++++|.+|++ +|-...+++..+.++|..++|++.+++ +|...|...++-..+.++.++.
T Consensus 125 ~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~ 204 (498)
T COG3104 125 ALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLL 204 (498)
T ss_pred HHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999864 366678888888889999998888776 8999998887766666654444
Q ss_pred ccC---------ChHHHHHcCCHHHHHHHHHHHhCC---CcchHHHHHHHHHH----Hh-----hcchhhhHHHHHHhhc
Q 014654 220 IPE---------SPRWLAKMGMTEDFESSLQVLRGF---DTDISIEVNEIKRS----VA-----SSSRRTAIRFAELKRK 278 (421)
Q Consensus 220 ~~e---------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~ 278 (421)
.+. .|..+..+............+... .....+........ .+ +....++.. .+-.|-
T Consensus 205 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~ 283 (498)
T COG3104 205 GRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRL 283 (498)
T ss_pred ccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHH
Confidence 321 111111111111111110000000 00000000000000 00 000000000 111111
Q ss_pred cchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhh--cCCC-chhHHHHHHHHHHHHHHHHHHHHhhccCCh-------HH
Q 014654 279 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN--AGIS-SSNVATFGLGVVQVVATGVNTWLMDKAGRR-------LL 348 (421)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~-------~~ 348 (421)
....++++...+.+...-.....++.|.....++ .|++ +.........+.-++..++..++..+.+++ .-
T Consensus 284 ~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~K 363 (498)
T COG3104 284 LAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIK 363 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchH
Confidence 1112333334444444444445555555544332 2332 223566666777777777777776664332 23
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCC
Q 014654 349 LLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKP 419 (421)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 419 (421)
..++..+++.+.+++......... ++ .....++ .+....+...-....+|+...++....|+...
T Consensus 364 FalGl~l~g~~fl~l~~~~~~~~~--~~---~~~s~~~-lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~ 428 (498)
T COG3104 364 FALGLILAGLGFLILLLAGIWFGG--PS---GLVSVWW-LVLSYVLQSFGELFISPVGLSMVTKLAPPALK 428 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC--CC---CCcCHHH-HHHHHHHHHHHHHHhCHHHHHHHHHhChHHHH
Confidence 445666666666666554222211 01 1112223 33333334444677789999999998887643
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.2e-17 Score=152.95 Aligned_cols=296 Identities=17% Similarity=0.145 Sum_probs=3.0
Q ss_pred HHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 014654 56 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135 (421)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 135 (421)
++..+...+..++....++.++++|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-.|.++.+++++++++-
T Consensus 9 ~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lP 88 (539)
T PF03137_consen 9 CLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALP 88 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhcc
Confidence 33445557777788888999999999999999999999999999999999999999888888889999999999887752
Q ss_pred c--------------------------------------------------chhhHHHHHHhhhcchhhhhccchhhhcc
Q 014654 136 K--------------------------------------------------DSSFLFMGRLLEGFGVGVISYTVPVYIAE 165 (421)
Q Consensus 136 ~--------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 165 (421)
+ -+..++++.++.|+|....++...+|+-|
T Consensus 89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD 168 (539)
T PF03137_consen 89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD 168 (539)
T ss_dssp ---------------------------------------------------------------SSS--------------
T ss_pred HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence 0 13467788999999999999999999999
Q ss_pred cCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----------------------chH----HHHHhhhHHHHHHHhhhcc
Q 014654 166 IAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----------------------NWR----VLAVLGVLPCTLLIPGLFF 219 (421)
Q Consensus 166 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----------------------~w~----~~f~~~~~~~~~~~~~~~~ 219 (421)
..++++-+...|+......+|.++|.++++.. .|- .-|++.+...++..+.+++
T Consensus 169 nv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~ 248 (539)
T PF03137_consen 169 NVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF 248 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999998888654 133 3344455555555555566
Q ss_pred ccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHH--HHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhh
Q 014654 220 IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIK--RSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (421)
Q Consensus 220 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (421)
+|++-+...+ ..++.+....+.. + ...++..+.+ +......++.....+.+++++. ++...+.......
T Consensus 249 FPk~lp~~~~--~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~----f~~~~la~~~~~~ 319 (539)
T PF03137_consen 249 FPKKLPGTSE--RQEEKESSERKEE--D-SDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPV----FMCLILAGVFESF 319 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccCCCccc--ccchhhhhhcchh--h-hhhhcccccccccchhhhhhhHHHHHHHHhcChH----HHHHHHHHHHHHH
Confidence 6654221100 0000000000000 0 0000000000 0001112223344555566643 4444444444444
Q ss_pred chHHHHHhHHHHHhh-cCCCchh---HHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHhhHHHHHHH
Q 014654 298 GINGVLFYSSNIFAN-AGISSSN---VATFGLGVVQVVATGVNTWLMDKAGR--RLLLLISSSGMAASF 360 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~-~g~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~ 360 (421)
....+..|.|.++|. ++.++.. +.....-.+.++|.+++|++.+|++- |..+....+...++.
T Consensus 320 ~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~ 388 (539)
T PF03137_consen 320 IVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSV 388 (539)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHH
Confidence 566777888888874 5766554 22223334667899999999999864 444444444444333
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7e-15 Score=132.12 Aligned_cols=268 Identities=16% Similarity=0.119 Sum_probs=147.3
Q ss_pred hccccccchHHHHh-hhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHH--HHHHHHHHHH-Hh----hc
Q 014654 65 TCGYSSPTQAEIIS-DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAA--VPNIIGWLII-SF----SK 136 (421)
Q Consensus 65 ~~~~~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~--~~~~~~~~~~-~~----~~ 136 (421)
..+...|..+..-+ +.|+|.+|+|.+.++..+...+.+++.|.++||+|.||-++... ++...+.+.. .+ ..
T Consensus 22 ~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~ 101 (412)
T PF01306_consen 22 IWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQS 101 (412)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566665554 58999999999999999999999999999999999766544332 2222232222 22 22
Q ss_pred ch-hhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhhHHHHH
Q 014654 137 DS-SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTL 212 (421)
Q Consensus 137 ~~-~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~w~~~f~~~~~~~~~ 212 (421)
|. ...+++-...|+......|+.-+++.++.. +.+.-.|-.-...++|.+++..+++.+ +-+..|++.....++
T Consensus 102 n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr--~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~i 179 (412)
T PF01306_consen 102 NFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSR--RNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAII 179 (412)
T ss_dssp T-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHH--HHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH--HhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHH
Confidence 33 234444555666666666666666655542 223334444555666666666666655 455777876655554
Q ss_pred HHhhhcc-ccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHH
Q 014654 213 LIPGLFF-IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLL 291 (421)
Q Consensus 213 ~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (421)
..++.++ -|+.++.....+.. ..++++...+...++++.+..|.+.+.....
T Consensus 180 l~lll~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~ 232 (412)
T PF01306_consen 180 LLLLLLLLKPDVPPQAEVADAL---------------------------GAKKDKVSLKDVLSLFKMRNFWFFVLFVIGV 232 (412)
T ss_dssp HHHHHHSS---SSSSS-SSTTS---------------------------SS------HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcCchhhhhhccc---------------------------ccCCCCCcHHHHHHHhcchhHHHHHHHHHHH
Confidence 4443333 33332100000000 0000111123345667777666554433332
Q ss_pred HHHhhhchHHHHHhHHHHHhhcCCCc----hh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHH
Q 014654 292 VLQQLSGINGVLFYSSNIFANAGISS----SN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (421)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~g~~~----~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (421)
... +...-...+.++...--+. .. ......-+..++...++.++.+|+|.|+.++++..++.+=.+..++
T Consensus 233 ~~~----Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~ 308 (412)
T PF01306_consen 233 AAI----YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF 308 (412)
T ss_dssp HHH----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH----HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh
Confidence 221 2333222334443322222 11 4455556778888999999999999999999998888877776664
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-14 Score=134.59 Aligned_cols=284 Identities=16% Similarity=0.197 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Q 014654 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (421)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 129 (421)
..+.+.++..+..++..+++...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|..|-+.+-+|.++.++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 34455566667788888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc-------------------c--------------------------------hh-hHHHHHHhhhcchhhhhc
Q 014654 130 LIISFSK-------------------D--------------------------------SS-FLFMGRLLEGFGVGVISY 157 (421)
Q Consensus 130 ~~~~~~~-------------------~--------------------------------~~-~l~~~r~l~G~~~g~~~~ 157 (421)
+++++-+ + .+ .++++.++.|+|....++
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 9988630 0 22 556779999999999999
Q ss_pred cchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----------------------chHHHHHhhhHHHHHHH
Q 014654 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----------------------NWRVLAVLGVLPCTLLI 214 (421)
Q Consensus 158 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----------------------~w~~~f~~~~~~~~~~~ 214 (421)
...+|+-|...+++-+..+|+......+|.++|.+++++. .|..-|++.+.+.++..
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988664 25566667777777777
Q ss_pred hhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHH
Q 014654 215 PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQ 294 (421)
Q Consensus 215 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (421)
+.++++|++.+.. .++.++.+ .+ ..+++.+ ..+........-++.+...+.+++++ +++...+....
T Consensus 337 ~p~f~fPk~lp~~---~~~~~~~~-~~-~~k~~~~----~~~~~~~~~~~ikdfp~s~~~ll~N~----if~~~~l~~~~ 403 (735)
T KOG3626|consen 337 VPLFFFPKELPKS---QKRKRARD-LH-VLKTESG----GAKSDKTFGKKIKDFPKSIKRLLSNP----IFMLVVLASVI 403 (735)
T ss_pred HHHHhCcccCccc---cccchhhh-hc-ccccccc----cccCCcchhhhHHHHHHHHHHHhcCc----hHHHHHHHHHH
Confidence 7777777653211 10000000 00 0000000 00000000001123344555666664 44444455555
Q ss_pred hhhchHHHHHhHHHHHh-hcCCCchh--HHHHHH-HHHHHHHHHHHHHHhhccCCh
Q 014654 295 QLSGINGVLFYSSNIFA-NAGISSSN--VATFGL-GVVQVVATGVNTWLMDKAGRR 346 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~-~~~~~~~~~~~g~l~d~~~~~ 346 (421)
....+.....|+|.+++ ++|.++.. ...... --+..+|.+++|++.+|+..+
T Consensus 404 ~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~ 459 (735)
T KOG3626|consen 404 ESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLS 459 (735)
T ss_pred HHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence 55557778888998887 46776655 333222 345568899999999998653
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-12 Score=122.53 Aligned_cols=299 Identities=18% Similarity=0.224 Sum_probs=178.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHH-HHHHHHHHHHHHhh-c-chhhHHHHHHhhhcchhhhhccchh
Q 014654 85 SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA-AVPNIIGWLIISFS-K-DSSFLFMGRLLEGFGVGVISYTVPV 161 (421)
Q Consensus 85 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~-~~~~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~g~~~~~~~~ 161 (421)
+-.++..++..+..++..|+.|.++|+-|+||.++.. ..+..+++.+..+. + +++...+.-++.-++.+.......+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999999999999987766654 45555566666653 3 3444445566666677888888899
Q ss_pred hhcccCCCCcc--------------------------hhHhhHHHHHHHHHHHHHHHhhccc------------chHHHH
Q 014654 162 YIAEIAPQNMR--------------------------GSLGSVNQLSVTIGIMLAYLLGLFV------------NWRVLA 203 (421)
Q Consensus 162 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~~~~~~~~l------------~w~~~f 203 (421)
++.|..+++++ ++..+.-.....+|.++.-++.-.+ +-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999999888 8888887777778877765554332 247777
Q ss_pred HhhhHHHHHH-HhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchh
Q 014654 204 VLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWF 282 (421)
Q Consensus 204 ~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (421)
.+.++..++. +..++++||.|+. +..+.. .. .....-++-...++++.+.+...
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~---~~~~~~-~~---------------------~~~~g~~~l~~t~k~~~~~~~~~ 284 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGP---RPLPSG-SS---------------------YLRFGFKRLWRTFKEIRKLRQLF 284 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCC---CCCCcc-hh---------------------HHHHHHHHHHHHHHHHHhChHHH
Confidence 7776665444 5567778887641 000000 00 00000111122333443333322
Q ss_pred HHHHHHHHHHHHhhhchHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCCh--HHHHHhhHHHH
Q 014654 283 PLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRR--LLLLISSSGMA 357 (421)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~ 357 (421)
. +++.++....+...+......+.+ ..|++..+ ...+...+.+++|+++.+++.||+|.| +.+..+.+...
T Consensus 285 ~----fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~ 360 (477)
T PF11700_consen 285 L----FLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI 360 (477)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 3 333333333345555555555544 67998877 555666889999999999999999998 77666655553
Q ss_pred HHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCC
Q 014654 358 ASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPN 420 (421)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg 420 (421)
+..+.-.+....... . . ...+.+.+...+++.+. .+..+..-++.+|+.|++..+
T Consensus 361 ~i~~~g~~G~~~~~~-g---~---~~~~~f~~~a~~~G~~~-G~~qs~sRs~~~~LiP~g~e~ 415 (477)
T PF11700_consen 361 IIPLYGLFGFWPSFF-G---L---KSPWEFWVLAVLIGLFM-GGIQSASRSLFSRLIPPGREA 415 (477)
T ss_pred HHHHHHHHHhhhccc-C---c---ccHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhCCCchhh
Confidence 322221111111000 0 0 01122222222233332 233667789999999998765
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=122.47 Aligned_cols=192 Identities=11% Similarity=0.036 Sum_probs=128.9
Q ss_pred HhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---------------
Q 014654 133 SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------- 197 (421)
Q Consensus 133 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l--------------- 197 (421)
+..++++.++++-++.|.|.+...+....++.+..++|++.+.+++.+..+++|..++|++++.+
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 35678999999999999999999999999999999999999999999999999999999998742
Q ss_pred -----chHHHHHhhhHHHHHHHhhhcc--ccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhH
Q 014654 198 -----NWRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAI 270 (421)
Q Consensus 198 -----~w~~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (421)
+|+++|++.+...++..+.+.+ +||.+. ++++ +..+++..
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~-----------------------~~~~~~~~---- 131 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA-----------------------RVSSGDTT---- 131 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc-----------------------cccccccc----
Confidence 4888888655544444333333 454311 0000 00000000
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhh---cCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCC
Q 014654 271 RFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN---AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGR 345 (421)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~ 345 (421)
..+..++++..+... +..+...........|.+.++++ .|.++.+ ........+..+|+++.+++.||+++
T Consensus 132 ~~~~~~~~~~~~l~~----~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~ 207 (310)
T TIGR01272 132 QKTSAFQFTHLVLGA----LGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQ 207 (310)
T ss_pred chhhHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 011223333222222 22222222345556667777754 3776555 56677788899999999999999999
Q ss_pred hHHHHHhhHHHHHHHH
Q 014654 346 RLLLLISSSGMAASFF 361 (421)
Q Consensus 346 ~~~~~~~~~~~~~~~~ 361 (421)
|+.+..+..+..++.+
T Consensus 208 ~~~l~~~~~l~~~~~~ 223 (310)
T TIGR01272 208 GRYLAFNAFLAVLLSI 223 (310)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988777766665543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.6e-15 Score=114.43 Aligned_cols=132 Identities=23% Similarity=0.373 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCC
Q 014654 91 GSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN 170 (421)
Q Consensus 91 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 170 (421)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+.....++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567788899999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred cchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhh-ccccC
Q 014654 171 MRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL-FFIPE 222 (421)
Q Consensus 171 ~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~-~~~~e 222 (421)
+|++..++.+....+|..+++.+.+.+ +|++.+++.+...++..+.. ++.||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999888766 79999888777666665543 34444
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-14 Score=133.41 Aligned_cols=146 Identities=15% Similarity=0.100 Sum_probs=122.1
Q ss_pred hhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhcc
Q 014654 79 DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 158 (421)
Q Consensus 79 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 158 (421)
+.+.+..+.|++.++..++..++.++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+.
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778999999999999999999999999999999999999999999888889999999999999999998888888
Q ss_pred chhhhcccCCCCcchhHhhH-HHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHh-hhccccCCh
Q 014654 159 VPVYIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFIPESP 224 (421)
Q Consensus 159 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~-~~~~~~e~~ 224 (421)
...++.|.+|++.|+...+. ++....+|.++++.+.+++ ||+..|.+.++..++..+ .++.+++++
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 88899999999999877655 5677788888888888776 899999987766655544 344444443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-13 Score=126.98 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=122.5
Q ss_pred chHH-HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhc
Q 014654 72 TQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (421)
Q Consensus 72 ~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (421)
..|. +++++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.+++.+++.++
T Consensus 238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 317 (393)
T PRK15011 238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAI 317 (393)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3443 557789999999999888888888899999999999999998887766666555555567788888888999888
Q ss_pred chhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhccccC
Q 014654 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPE 222 (421)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~~~~e 222 (421)
+.|...+....+..|.+| ++|+++.++++....+|..+++.+++.+ +|+..|++.+++.++.++..++.||
T Consensus 318 ~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 318 YIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 887777777788889888 5699999999888889999998888776 8999998888777777777666654
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.9e-12 Score=110.11 Aligned_cols=240 Identities=13% Similarity=0.088 Sum_probs=153.9
Q ss_pred ccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHh
Q 014654 68 YSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLL 147 (421)
Q Consensus 68 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 147 (421)
.-+|..-.+-+++|.+..|++.+....+....+..++.|.++||+|||+..+...++.+++++ +-..++++.++++|++
T Consensus 52 LQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvl 130 (354)
T PF05631_consen 52 LQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVL 130 (354)
T ss_pred hhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHH
Confidence 344666667789999999999999999999999999999999999999999999999999996 4567899999999999
Q ss_pred hhcchhhhhccchhhhc-ccC----CCCcchhHhhHHH-HHHHHHHHHHHHhhccc----c--hHHHHHhhhHHHHHHHh
Q 014654 148 EGFGVGVISYTVPVYIA-EIA----PQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV----N--WRVLAVLGVLPCTLLIP 215 (421)
Q Consensus 148 ~G~~~g~~~~~~~~~i~-~~~----~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l----~--w~~~f~~~~~~~~~~~~ 215 (421)
.|++.+..+..--++.. |+- |++..+...+... ..+++-.+.+.+++.++ + -..+|.......++..+
T Consensus 131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~ 210 (354)
T PF05631_consen 131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAV 210 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 99999999887777653 332 2222222222222 12222233444444433 2 36788887766666655
Q ss_pred hh-ccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHH
Q 014654 216 GL-FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQ 294 (421)
Q Consensus 216 ~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (421)
.. ...+|.+.. ..+ ..+..+..+..++.+.+++ +.+.........
T Consensus 211 ~I~~~W~ENyg~------~~~-------------------------~~~~~~~~~~a~~~i~~d~---ril~LG~~qslF 256 (354)
T PF05631_consen 211 LILKTWPENYGD------TSS-------------------------SSSLSGSFREAWRAILSDP---RILLLGLIQSLF 256 (354)
T ss_pred HHHhcccccCCC------ccc-------------------------ccchHHHHHHHHHHHHcCc---hhHHHHHHHHHH
Confidence 33 345554320 000 0000111223344555544 344445556666
Q ss_pred hhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 014654 295 QLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDK 342 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 342 (421)
....+..+..|.|.+-.+-.--+-.+....+.+..++|+.+..++..+
T Consensus 257 E~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 257 EGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 666666677777776522111233367777788888998888765544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=134.55 Aligned_cols=137 Identities=16% Similarity=0.081 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccC
Q 014654 88 SIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 167 (421)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 167 (421)
.+...+..++..++.++.|+++||+|||++++++.++.++++++.++.++...+++.+++.|++.++..+...++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456677889999999999999999999999999999999999999998888888899999988888999999999999
Q ss_pred CCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhhHHHHHHHhhhccccCCh
Q 014654 168 PQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPGLFFIPESP 224 (421)
Q Consensus 168 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~w~~~f~~~~~~~~~~~~~~~~~~e~~ 224 (421)
|.+.|++++|+.+....+|.+++|.+++.+ +...+|++.++..++..++.+++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999998765 445677777776676666666778874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=126.35 Aligned_cols=142 Identities=12% Similarity=0.035 Sum_probs=121.3
Q ss_pred chHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcch--hhHHHHHHhhh
Q 014654 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS--SFLFMGRLLEG 149 (421)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G 149 (421)
..+.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||+.+.++.++.+++.+...+.++. ..+++..++.|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (377)
T TIGR00890 227 LYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF 306 (377)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence 3455667889999999999999999999999999999999999999999999988888877776643 23445678888
Q ss_pred cchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHH
Q 014654 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL 213 (421)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~ 213 (421)
++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+ +|++.|++.++..++.
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 888888888888999999999999999999999999999999887765 8999998877666554
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.1e-12 Score=111.03 Aligned_cols=289 Identities=15% Similarity=0.166 Sum_probs=179.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHH-HHHHHHHHHHHHHHhhcc--hhh-HHHHHHhhhcchhhhhccch
Q 014654 85 SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM-IAAVPNIIGWLIISFSKD--SSF-LFMGRLLEGFGVGVISYTVP 160 (421)
Q Consensus 85 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~~~~~~~~~--~~~-l~~~r~l~G~~~g~~~~~~~ 160 (421)
+.++...++..+-.++-.|+.|.++|+.|+||..+ +...+..+......+.++ ++. .++.-.+..++.........
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 44788899999999999999999999999766555 445555556666666554 444 44557888899999999999
Q ss_pred hhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhh------c----------------ccchHHHHHhhhHHHHHHHh-hh
Q 014654 161 VYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG------L----------------FVNWRVLAVLGVLPCTLLIP-GL 217 (421)
Q Consensus 161 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~------~----------------~l~w~~~f~~~~~~~~~~~~-~~ 217 (421)
+++.+..++++-++..+.-.....+|..+.-++. . ...-|..+.+.++..++..+ .+
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~ 217 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI 217 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence 9999999988877776665444444444332221 1 11467777777766555544 55
Q ss_pred ccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhh
Q 014654 218 FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (421)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (421)
+..++.++- +.+.. +...+.-++-..+++++.+++....+++... ...-
T Consensus 218 ~~v~~~~~~---~~~~~------------------------~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~----~~~D 266 (438)
T COG2270 218 LNVHDAEKI---SSPPP------------------------TALRNGFKELKSTFKEIRGRKNLVLFLIARF----FYID 266 (438)
T ss_pred hcccccccc---cccch------------------------HHHHHHHHHHHHHHHHHhcccchHHHHHHHH----HHHh
Confidence 555555420 00000 0001112223445666666654444433332 2223
Q ss_pred chHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhcccc
Q 014654 298 GINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVS 374 (421)
Q Consensus 298 ~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (421)
+.+.+..+...+-. .+|+++.+ .......+++++|+++.|++.||+|.|+++..+.++..+.++.......
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~------ 340 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG------ 340 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc------
Confidence 45555555555555 67998877 4455568899999999999999999999888887776665544432211
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCC
Q 014654 375 EDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPN 420 (421)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg 420 (421)
.....++..+++.+. .+.....-+|..+..|++.-+
T Consensus 341 ---------~~~f~i~gll~g~s~-G~~qA~SRSy~~~lvp~~k~~ 376 (438)
T COG2270 341 ---------ELDFWILGLLVGTSL-GGAQASSRSYLARLVPKGKEG 376 (438)
T ss_pred ---------cHHHHHHHHHHHHhc-chHHHHHHHHHHHhCCCcccc
Confidence 011112212222222 233556678999999998765
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-13 Score=126.18 Aligned_cols=149 Identities=10% Similarity=0.076 Sum_probs=125.6
Q ss_pred chHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcc
Q 014654 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (421)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (421)
..|.+.++.|.+..+.+.+.+.+.++..++.++.|+++||+|||+.+..+.+...++.+...+.++.+.+.+..++.|++
T Consensus 242 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 321 (406)
T PRK11551 242 WLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF 321 (406)
T ss_pred HHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999999999999999999999887777777777777778888888888889998
Q ss_pred hhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhhHHHHHHHhhhccc
Q 014654 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFI 220 (421)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~w~~~f~~~~~~~~~~~~~~~~~ 220 (421)
.+...+...+++.|.+|+++|++..++.+....+|..++|.+++.+ +|...++......++..+..+++
T Consensus 322 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 322 VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999999999998877 45666666655555554444433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.7e-12 Score=110.05 Aligned_cols=260 Identities=15% Similarity=0.118 Sum_probs=168.7
Q ss_pred HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhc-----hHHHHHH-HHHHHHHHHHHHHhh-----c-------c
Q 014654 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG-----RKGSLMI-AAVPNIIGWLIISFS-----K-------D 137 (421)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~-~~~~~~~~~~~~~~~-----~-------~ 137 (421)
+..|++++..-.+.+.+...+.. ...+.+|+.+|+.+ ||..+++ |..+...+..+..++ . +
T Consensus 6 MIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 66789999999999988888765 46899999999999 8877765 566655555554442 2 2
Q ss_pred h--h--hHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhh--
Q 014654 138 S--S--FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLG-- 206 (421)
Q Consensus 138 ~--~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~w~~~f~~~-- 206 (421)
. + ...++-.+.|+|.+...+...+++.|..|+++|+++.++...+..+|.+++..+.+.+ .-|..-.+.
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~ 164 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV 164 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence 2 1 2334567889999999999999999999999999999999999999999998887765 222222222
Q ss_pred -hHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHH
Q 014654 207 -VLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285 (421)
Q Consensus 207 -~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (421)
.+...+.++..+-. |.+. ... .+..++++......++++..++..++++
T Consensus 165 a~i~~~l~~ia~wg~-E~r~-~~~----------------------------~~~~~~~~~~f~~a~~~~~~~~~a~~f~ 214 (403)
T PF03209_consen 165 ALIALLLNLIALWGQ-EPRR-SRR----------------------------AAAAERPRPPFREAWRQVWASPQARRFF 214 (403)
T ss_pred HHHHHHHHHHHHHhc-ccCC-ccc----------------------------ccCCCCCCccHHHHHHHHHhCCChhHHH
Confidence 22222222222222 2110 000 0011223344556677777777777666
Q ss_pred HHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhh-ccCChHHHHHhhHHHHHHHHH
Q 014654 286 IGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMD-KAGRRLLLLISSSGMAASFFL 362 (421)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~ 362 (421)
...++.....+.-- ...-|+=-+.+|++..+ ......+.+.++|..+.+++.. |.++++....++....+++.+
T Consensus 215 ~fl~l~t~a~~~QD---~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~l 291 (403)
T PF03209_consen 215 VFLFLGTLAFFMQD---VILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFAL 291 (403)
T ss_pred HHHHHHHHHHHhhH---HHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 55544444221100 11122222345887666 6666778888899888887655 678888888888888888777
Q ss_pred HHHHHHh
Q 014654 363 VSVAFFL 369 (421)
Q Consensus 363 ~~~~~~~ 369 (421)
+...-..
T Consensus 292 ii~a~~~ 298 (403)
T PF03209_consen 292 IILAGPL 298 (403)
T ss_pred HHHHHhc
Confidence 7665443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.8e-14 Score=129.24 Aligned_cols=152 Identities=14% Similarity=0.273 Sum_probs=123.2
Q ss_pred chHHHHhhhCCC--------hhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhc----chh
Q 014654 72 TQAEIISDLKLT--------ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK----DSS 139 (421)
Q Consensus 72 ~~~~i~~~~~~s--------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----~~~ 139 (421)
..+...++.|.+ .++.+...++..++..++.++.|+++||+|+|+++..+.++.+++..+..... +++
T Consensus 230 ~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~ 309 (418)
T TIGR00889 230 FGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYA 309 (418)
T ss_pred hHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHH
Confidence 345555566644 36679999999999999999999999999999999999999988877666632 245
Q ss_pred hHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHH-HHHHHHHHHHHHhhccc----------chHHHHHhhhH
Q 014654 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV----------NWRVLAVLGVL 208 (421)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l----------~w~~~f~~~~~ 208 (421)
.+++.+++.|++.+...+....++.|++|+++|+++.++.+ ....+|..+||.+++.+ ||+..|.+.++
T Consensus 310 ~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~ 389 (418)
T TIGR00889 310 LLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAG 389 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 66778999999999888888999999999999999999997 66788999999888765 38999988776
Q ss_pred HHHHHHh-hhccccCC
Q 014654 209 PCTLLIP-GLFFIPES 223 (421)
Q Consensus 209 ~~~~~~~-~~~~~~e~ 223 (421)
..++..+ ..++++|+
T Consensus 390 ~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 390 YIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 6665544 45556665
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.8e-13 Score=121.06 Aligned_cols=158 Identities=21% Similarity=0.329 Sum_probs=139.1
Q ss_pred hhhhccccccchHHHHhhh-CCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHH-HHHHHHHHHHHHHHHHHhhcchh
Q 014654 62 FGFTCGYSSPTQAEIISDL-KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKG-SLMIAAVPNIIGWLIISFSKDSS 139 (421)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~-~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~~~~~ 139 (421)
............|.+.++. |.+..+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 266 (352)
T cd06174 187 LSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLA 266 (352)
T ss_pred HHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHH
Confidence 3334444455566666655 999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHh
Q 014654 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (421)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~ 215 (421)
.+.+..++.|++.+...+...+++.|..|+++|++..++.+....+|..+++.+.+.+ +|+..+++.+++.++..+
T Consensus 267 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i 346 (352)
T cd06174 267 LLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAAL 346 (352)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888765 899999998888777766
Q ss_pred hhcc
Q 014654 216 GLFF 219 (421)
Q Consensus 216 ~~~~ 219 (421)
..++
T Consensus 347 ~~~~ 350 (352)
T cd06174 347 LLLL 350 (352)
T ss_pred Hhee
Confidence 5544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=119.84 Aligned_cols=146 Identities=15% Similarity=0.226 Sum_probs=122.1
Q ss_pred HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhh
Q 014654 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVI 155 (421)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 155 (421)
+.+++|.++.+.+++.+.......++.++.|++.||+|||+.+..+.++..+..+...+.++.+.+.+.+++.|++.+..
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 305 (375)
T TIGR00899 226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGIL 305 (375)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999988888888888999999999999999998887776666666666778888888899999999888
Q ss_pred hccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhccccC
Q 014654 156 SYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPE 222 (421)
Q Consensus 156 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~~~~e 222 (421)
.+....++.|..|+ +++.+.++++....+|..++|.+++.+ +|+..|++.++..++..+...+++|
T Consensus 306 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 306 AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 88888889998875 567999999998899999999888765 8999999888877777666555543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=122.24 Aligned_cols=150 Identities=13% Similarity=0.189 Sum_probs=123.8
Q ss_pred chHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcc
Q 014654 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (421)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (421)
..+.+.++.|. ++.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|++
T Consensus 238 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 315 (399)
T PRK05122 238 FITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFG 315 (399)
T ss_pred HHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444555565 3456777888899999999999999999999999999888888888888888888888899999999
Q ss_pred hhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhccccCC
Q 014654 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPES 223 (421)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~~~~e~ 223 (421)
.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+.+ +|+..|++.+...++.++..++++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 316 FSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9988888888888999999999999999999999988887776665 89999998877777766655555443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-12 Score=118.32 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=124.2
Q ss_pred cchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhc
Q 014654 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (421)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (421)
...|.+.+|+|.+..++|++.+...++..++.++.+++.||+|+|+.+.++.++..+..+..+++++.+.+++.+++.|+
T Consensus 226 ~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~ 305 (382)
T TIGR00902 226 GFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCG 305 (382)
T ss_pred HHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Confidence 34565667799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccchhhhcccCCCCcchhHhhHHH-HHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhh
Q 014654 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (421)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~ 216 (421)
..+...+....++.+. |+++|+...++++ ...++|..+++.+++.+ ++ ..|++.+...++..+.
T Consensus 306 ~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 306 TFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 9999999999999998 8899999999976 56788888888888877 54 4455555555554433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=121.65 Aligned_cols=146 Identities=12% Similarity=0.037 Sum_probs=120.7
Q ss_pred ccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh--hchHHHHHH--HHHHHHHHHHHHHhhcchhhHHHHH
Q 014654 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY--IGRKGSLMI--AAVPNIIGWLIISFSKDSSFLFMGR 145 (421)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr--~Grr~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~r 145 (421)
...+|.+.+++|.+..+.+++.++..++..+++++.|+++|| +++|+...+ +.++.+++.++....++++.+++.+
T Consensus 261 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~ 340 (455)
T TIGR00892 261 IIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYC 340 (455)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 345666777899999999999999999999999999999997 334433333 3444455556667788899999999
Q ss_pred HhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhhHHHHHHHh
Q 014654 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIP 215 (421)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~w~~~f~~~~~~~~~~~~ 215 (421)
++.|++.+...+...+++.|.+|++++++..++++....+|..+||.+++.+ +|++.|++.++..++..+
T Consensus 341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876 589999887776655544
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.8e-12 Score=119.01 Aligned_cols=145 Identities=12% Similarity=0.112 Sum_probs=122.3
Q ss_pred chHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcc
Q 014654 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (421)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (421)
..|.+.++.|.+ +.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.|++
T Consensus 238 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 315 (392)
T PRK12382 238 FVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAG 315 (392)
T ss_pred HHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344455556654 356667778888899999999999999999999999999888888888888888888899999999
Q ss_pred hhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhc
Q 014654 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (421)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~ 218 (421)
.+...+...+.+.|.+|+++|+++.++++....+|..++|.+.+.+ +|+..|.+.+...++..+..+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 316 CSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 9988888888899999999999999999999999999999888776 899999988777766655433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-12 Score=119.08 Aligned_cols=142 Identities=17% Similarity=0.173 Sum_probs=109.5
Q ss_pred ccchHHHH-hhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH--HHHHh--hcchhhHHHH
Q 014654 70 SPTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW--LIISF--SKDSSFLFMG 144 (421)
Q Consensus 70 ~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~--~~~~~--~~~~~~l~~~ 144 (421)
....|.+. +++|.+.++.+...+...++..++.++.|+++||+|||+.+..+..+..+.. +...+ .++.+.+.+.
T Consensus 239 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (394)
T TIGR00883 239 TTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFL 318 (394)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34455554 7789999999999999999999999999999999999998776554443333 22222 2466677778
Q ss_pred HHhhhcchhhhhccchhhhcccCCCCcchhHhhH-HHHHHHHHHHHHHHhhccc----c-hHHHHHhhhHHHH
Q 014654 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCT 211 (421)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l----~-w~~~f~~~~~~~~ 211 (421)
.++.|++.+...+...+++.|.+|+++|+++.++ .+....+|..++|.+++.+ + |+..++..+...+
T Consensus 319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 319 VLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 8999999989999999999999999999999987 4566677888888888766 4 8777666554433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-10 Score=102.54 Aligned_cols=152 Identities=14% Similarity=0.259 Sum_probs=125.5
Q ss_pred hHHHHhh-hCCChhhHH-HHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhc
Q 014654 73 QAEIISD-LKLTISEFS-IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (421)
Q Consensus 73 ~~~i~~~-~~~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (421)
.|.+.+. .|++.+|+. -+.-...-.+....++...+.|..+.|++++++.+...+...+..+.++...+-+..+.-|+
T Consensus 27 ~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~ 106 (412)
T PF01770_consen 27 TPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGL 106 (412)
T ss_pred hHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHH
Confidence 3445554 789988864 56667777788889999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc------chHHHHHhhhHHHHHHHhhhccccCCh
Q 014654 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESP 224 (421)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l------~w~~~f~~~~~~~~~~~~~~~~~~e~~ 224 (421)
+.+. ..+..+++....|+++--++.+....+..+|..++.++|..+ +++...++......++++..+++|..+
T Consensus 107 ~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~ 185 (412)
T PF01770_consen 107 ATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPK 185 (412)
T ss_pred HHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 8755 667789999999999999999999998888888888888765 566677776666666666667777765
Q ss_pred H
Q 014654 225 R 225 (421)
Q Consensus 225 ~ 225 (421)
+
T Consensus 186 ~ 186 (412)
T PF01770_consen 186 R 186 (412)
T ss_pred c
Confidence 4
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-12 Score=117.50 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=105.8
Q ss_pred cccchHH-HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHH--HHH------HHHHHHHHHHHHHHhhcchh
Q 014654 69 SSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKG--SLM------IAAVPNIIGWLIISFSKDSS 139 (421)
Q Consensus 69 ~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~--~~~------~~~~~~~~~~~~~~~~~~~~ 139 (421)
.....|. +.+++|.+..+.+++.+...++..++.++.|+++||+|||+ ... .+.++..+........++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (399)
T TIGR00893 234 FLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPY 313 (399)
T ss_pred HHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 3344454 45668999999999999999999999999999999999996 111 11111111111112223444
Q ss_pred hHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c-hHHHHHhhhHHHHHHH
Q 014654 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCTLLI 214 (421)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~-w~~~f~~~~~~~~~~~ 214 (421)
..+....+.+.+.+ ..+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+ + |+..|++.++..++..
T Consensus 314 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~ 392 (399)
T TIGR00893 314 AALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGA 392 (399)
T ss_pred HHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHH
Confidence 44444445555444 7888999999999999999999999999999999999888776 5 9988888776666554
Q ss_pred hh
Q 014654 215 PG 216 (421)
Q Consensus 215 ~~ 216 (421)
+.
T Consensus 393 ~~ 394 (399)
T TIGR00893 393 LS 394 (399)
T ss_pred HH
Confidence 43
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4e-12 Score=118.66 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=122.6
Q ss_pred ccchHHHHhhhCCChh----hHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHH
Q 014654 70 SPTQAEIISDLKLTIS----EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGR 145 (421)
Q Consensus 70 ~~~~~~i~~~~~~s~~----~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 145 (421)
.+..+.+.++.+.+.+ ..+.+.+++.++..++.+..|+++||+|||+.+..+..+..++.+...+.++.+.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (408)
T PRK09874 239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILR 318 (408)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3445555555433332 246667777888889999999999999999999999888888888777888888888999
Q ss_pred HhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhc
Q 014654 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (421)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~ 218 (421)
++.|++.+...+...+++.+..++++|++..++.+....+|..+||.+++.+ +|+..|++.++..++..+..+
T Consensus 319 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 319 FLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred HHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988766 899999988877777665443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.9e-12 Score=118.99 Aligned_cols=149 Identities=13% Similarity=0.099 Sum_probs=106.9
Q ss_pred ccchHH-HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHH--HHHhhcchhhHHHHHH
Q 014654 70 SPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL--IISFSKDSSFLFMGRL 146 (421)
Q Consensus 70 ~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~r~ 146 (421)
....|. +++++|.+..+.++..+...++..++.++.|+++||+|||+.+.....+..++.. .....++.+...+.++
T Consensus 278 ~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (467)
T PRK09556 278 DNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLF 357 (467)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344564 5577999999999999999999999999999999999999877665444443332 2233456666667888
Q ss_pred hhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHH-HHHHHHHhhccc----------------chHHHHHhhhHH
Q 014654 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----------------NWRVLAVLGVLP 209 (421)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l----------------~w~~~f~~~~~~ 209 (421)
+.|++.............|.+|++.||.+.|+.+....+ |..++|.+.+.+ +|+..|++..+.
T Consensus 358 ~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~ 437 (467)
T PRK09556 358 ALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIA 437 (467)
T ss_pred HHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHH
Confidence 888654333333345677999999999999999888775 656655544322 589999887666
Q ss_pred HHHHHhhhc
Q 014654 210 CTLLIPGLF 218 (421)
Q Consensus 210 ~~~~~~~~~ 218 (421)
.++..+..+
T Consensus 438 ~~~~~~~~~ 446 (467)
T PRK09556 438 AIGCICLMA 446 (467)
T ss_pred HHHHHHHHH
Confidence 666555444
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=113.79 Aligned_cols=145 Identities=12% Similarity=0.116 Sum_probs=118.1
Q ss_pred chHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcc
Q 014654 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (421)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (421)
.+|.+.++.|.+.++.++..+...++..+++++.|++.||+|+|+++..+..+..++.+... + ........++.|++
T Consensus 222 ~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~ 298 (381)
T PRK03633 222 LMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAA 298 (381)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHH
Confidence 46767777899999999999999999999999999999999999999888888777665443 2 23344567888888
Q ss_pred hhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhcc
Q 014654 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (421)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~~ 219 (421)
.+...|...+++.|..|+++++...+.+....++|..+||.+++.+ +|++.|.+.+...++..+..+.
T Consensus 299 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 299 GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 7788899999999999988888888888888999999999988877 7889988877766665544443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.5e-12 Score=116.32 Aligned_cols=127 Identities=17% Similarity=0.222 Sum_probs=106.3
Q ss_pred ccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhh
Q 014654 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (421)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (421)
....|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+......+......++....++.+.+++..++.|
T Consensus 270 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 349 (398)
T TIGR00895 270 TNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAG 349 (398)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 34466788899999999999999999999999999999999999995544444333333333333567777888899999
Q ss_pred cchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhcc
Q 014654 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF 196 (421)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 196 (421)
++.+...+...+++.|.+|+++|+++.++......+|..++|.+++.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 350 FFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 99999999999999999999999999999999999999999998765
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.2e-12 Score=116.40 Aligned_cols=131 Identities=18% Similarity=0.275 Sum_probs=107.1
Q ss_pred HHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHH-HHHhhcchhhHHHHHHhhhcchh
Q 014654 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL-IISFSKDSSFLFMGRLLEGFGVG 153 (421)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~g 153 (421)
.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+..+.++..+..+ .....++.+.+.+..++.|++.+
T Consensus 264 ~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (405)
T TIGR00891 264 YLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQ 343 (405)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHc
Confidence 35567899999999999999999999999999999999999999888766543333 33344566666677777887777
Q ss_pred hhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c-hHHHHHh
Q 014654 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVL 205 (421)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~-w~~~f~~ 205 (421)
...+...+++.|.+|+++|+++.++.+....+|..++|++.+.+ | |+..+..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 344 GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 77788888999999999999999999999999999999998877 4 5554443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.9e-12 Score=117.35 Aligned_cols=154 Identities=12% Similarity=0.084 Sum_probs=126.6
Q ss_pred cchHHHHhh-hCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhh
Q 014654 71 PTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (421)
Q Consensus 71 ~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (421)
...|.+.++ +|.++.+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+...++.++.|
T Consensus 244 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (417)
T PRK10489 244 VLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFG 323 (417)
T ss_pred HhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 345656666 8999999999999999999999999999999988888888888888888888888888888888899999
Q ss_pred cchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHH-HHhhhccccCCh
Q 014654 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTL-LIPGLFFIPESP 224 (421)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~-~~~~~~~~~e~~ 224 (421)
++.+...+...+++.|..|++.|+++.+++.....+|..+|+.+.+.+ +++..+++.+...++ .++....+++.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 324 YLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 988888788888999999999999999999999999999998888776 667677665544443 444555556553
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-11 Score=115.33 Aligned_cols=149 Identities=13% Similarity=0.167 Sum_probs=109.8
Q ss_pred HHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh---h-cchhhHHHHHHhhhc
Q 014654 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF---S-KDSSFLFMGRLLEGF 150 (421)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l~G~ 150 (421)
.+.+++|.+.+....+.....+...++.++.|+++||+|||+.+..+.++..++.+.... . ++.+.+++..++.|+
T Consensus 276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (438)
T PRK09952 276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI 355 (438)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 345678988877666666667777888999999999999999988887666554433322 2 234444455677788
Q ss_pred chhhhhccchhhhcccCCCCcchhHhhHH-HHHHHHHHHHHHHhhccc------chHHHHHhhhHHHHHHHhhhccccCC
Q 014654 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVN-QLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPES 223 (421)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~~~~~l------~w~~~f~~~~~~~~~~~~~~~~~~e~ 223 (421)
+.+...+...+++.|.+|++.|+...++. ..+..+|..++|.+.+.+ +|+..+.+.++..++..+..+.++|+
T Consensus 356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 88888888899999999999998888884 444557888888877665 48888877777777776665566654
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=114.27 Aligned_cols=150 Identities=15% Similarity=0.084 Sum_probs=121.6
Q ss_pred cchHHHH-hhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhh
Q 014654 71 PTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (421)
Q Consensus 71 ~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (421)
...|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+.+.....+..+..++....++.+.+.+..++.|
T Consensus 226 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 305 (394)
T PRK03699 226 SWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLG 305 (394)
T ss_pred HHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3455555 678999999999999999999999999999999999999998888777777777777788877777888999
Q ss_pred cchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhcccc
Q 014654 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIP 221 (421)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~~~~ 221 (421)
++.+...+...++..+..+ ++++...+.......+|..++|.+.+.+ ||+..+++.++..++..+...+++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 306 FFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence 9888888887777777766 5567778888888889999999888776 889888887766666655444443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=116.53 Aligned_cols=155 Identities=15% Similarity=0.083 Sum_probs=112.9
Q ss_pred ccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhc--ch-h-hHHHHH
Q 014654 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DS-S-FLFMGR 145 (421)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~-~-~l~~~r 145 (421)
....|.+.++.|.+..+..+......++..++.++.|+++||+|||++++.+.++.+++.++.+... +. + ....+-
T Consensus 291 ~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 370 (479)
T PRK10077 291 LYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 370 (479)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 3445778888999888778888888889999999999999999999999999999888887765431 21 1 222333
Q ss_pred Hhhhcchhh-hhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHH----Hhh--c----ccchHHHHHhhhHHHHHHH
Q 014654 146 LLEGFGVGV-ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY----LLG--L----FVNWRVLAVLGVLPCTLLI 214 (421)
Q Consensus 146 ~l~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~----~~~--~----~l~w~~~f~~~~~~~~~~~ 214 (421)
++.+.+.+. ..+....++.|.+|+++|+.+.++......+|.++++ .+. + ..+|++.|++.++.+++..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (479)
T PRK10077 371 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 450 (479)
T ss_pred HHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHH
Confidence 444444433 2366788999999999999999999888888887764 333 1 2378888888776655555
Q ss_pred hh-hccccCCh
Q 014654 215 PG-LFFIPESP 224 (421)
Q Consensus 215 ~~-~~~~~e~~ 224 (421)
+. +++.||++
T Consensus 451 ~~~~~~~~e~~ 461 (479)
T PRK10077 451 LFMWKFVPETK 461 (479)
T ss_pred HHHHhccccCC
Confidence 54 44566653
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.2e-11 Score=111.76 Aligned_cols=143 Identities=15% Similarity=0.113 Sum_probs=113.2
Q ss_pred HHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHH-HHHhhcchhhHHHHHHhhhcch
Q 014654 74 AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL-IISFSKDSSFLFMGRLLEGFGV 152 (421)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~ 152 (421)
|.+.+++|.+..+.+++.+...++..+++++.|+++||+|||+.. .+..+..++.. .....++.+.+.+..++.|++.
T Consensus 230 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~ 308 (390)
T PRK03545 230 PFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAI 308 (390)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 345666899999999999999999999999999999999988754 44444444433 3445677888888899999988
Q ss_pred hhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhc
Q 014654 153 GVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (421)
Q Consensus 153 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~ 218 (421)
+...+...+.+.+..| ++|++++++++....+|..+||++++.+ +++..|++.+.+.++.++...
T Consensus 309 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 309 MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSI 377 (390)
T ss_pred hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Confidence 7777777788888766 6889999998888888888888887765 899999988877777665443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-11 Score=116.77 Aligned_cols=158 Identities=14% Similarity=0.054 Sum_probs=119.2
Q ss_pred ccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh---h--c----
Q 014654 66 CGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF---S--K---- 136 (421)
Q Consensus 66 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~--~---- 136 (421)
........|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++.++ . +
T Consensus 300 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (481)
T TIGR00879 300 INAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSK 379 (481)
T ss_pred CeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 334445567788889999988999999999999999999999999999999999998888877776652 1 1
Q ss_pred --chhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHH
Q 014654 137 --DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (421)
Q Consensus 137 --~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~ 210 (421)
+...+....+..+.......+....++.|.+|+++|+.+.++.+....+|.++++.+.+.+ +|++.|++.+.++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~ 459 (481)
T TIGR00879 380 SSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLN 459 (481)
T ss_pred chhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHH
Confidence 2222223333333323334466677789999999999999999999999999999887665 7898888877776
Q ss_pred HHHHhh-hccccCC
Q 014654 211 TLLIPG-LFFIPES 223 (421)
Q Consensus 211 ~~~~~~-~~~~~e~ 223 (421)
++..+. .++.||.
T Consensus 460 ~~~~i~~~~~~~~~ 473 (481)
T TIGR00879 460 VLGLIFVYFFLPET 473 (481)
T ss_pred HHHHHHHheecccC
Confidence 666554 4455665
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.9e-11 Score=108.63 Aligned_cols=320 Identities=17% Similarity=0.178 Sum_probs=185.9
Q ss_pred HHHHHHhhhhccccccchHHHHhhhCCChh-hHHHHHHHH----HHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHH
Q 014654 56 ALGPIQFGFTCGYSSPTQAEIISDLKLTIS-EFSIFGSLA----NVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL 130 (421)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~~~~~s~~----~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 130 (421)
.+-.|..++......+..+.....++-+.. ..+...... .+...+.++..|.++||+|||..+.+..+...+..+
T Consensus 28 fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~ 107 (463)
T KOG2816|consen 28 FLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPAL 107 (463)
T ss_pred HHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHH
Confidence 333455555555555555555555554332 223333333 577788999999999999999999999998888888
Q ss_pred HHHhhcchhhHHHHHHhhhcc--hhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHH
Q 014654 131 IISFSKDSSFLFMGRLLEGFG--VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAV 204 (421)
Q Consensus 131 ~~~~~~~~~~l~~~r~l~G~~--~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~ 204 (421)
...+.. +| +++ +.|+. .+.......++++|....++|....++....+..+..++|.+++.. +.-..|.
T Consensus 108 ~~~~~~-~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ 182 (463)
T KOG2816|consen 108 CLLFQG-YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFL 182 (463)
T ss_pred HHHHHH-HH-Hhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHH
Confidence 777766 33 333 44432 3456677889999999999999999999999999999999988776 5667777
Q ss_pred hhhHHHHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhh---ccc
Q 014654 205 LGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKR---KRY 280 (421)
Q Consensus 205 ~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 280 (421)
+..+..++..+ .+.++||+-....+ .++ ....... .+.........++...+ ++.
T Consensus 183 ia~~~~~~~~~y~~~~l~Esl~~~~~---~~~---~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~r~ 241 (463)
T KOG2816|consen 183 IAAASGILSLLYMLLFLPESLQEKER---SDA---TLRELTP---------------GSLDSSHVADAFQSLTKVGPDRL 241 (463)
T ss_pred HHHHHHHHHHHHHhhccccccCcccc---ccc---cccccCC---------------CcccchhhhhhhhhhcccCCCcc
Confidence 87777777665 56668887321000 000 0000000 00000001111111111 111
Q ss_pred hhHHHHHHHHHHHHhhhchH-HHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHH-HHhhccCChHHHHHhhHHH
Q 014654 281 WFPLMIGIGLLVLQQLSGIN-GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNT-WLMDKAGRRLLLLISSSGM 356 (421)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~ 356 (421)
...+.....+.......+.. ...+|. -...++++.+ ......+....++.++.. .+...++.|+....|....
T Consensus 242 ~l~l~l~~~~~~~~~~~~~~~~~~~yl---~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~ 318 (463)
T KOG2816|consen 242 LLLLLLVAFLSSLPEAGGASDVLLLYL---KAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSE 318 (463)
T ss_pred chHHHHHHHHHHHHHhcCceeEEEEEE---eeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHH
Confidence 11111111111111111111 111111 1234776666 344555666667766665 7788889888888888888
Q ss_pred HHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 357 AASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
.+.....++... .+....... ...++....|...+..+-....+.||+
T Consensus 319 ~~~~~~~af~~~---------------~w~~~~~~v--~~~~~~~~~pa~~s~~s~~v~~~e~g~ 366 (463)
T KOG2816|consen 319 FLQLLLFAFATE---------------TWMMFAAGV--VVALAGIVFPAIRAFASILVSPEEQGK 366 (463)
T ss_pred HHHHHHHHHhcc---------------chhhhHHHH--HHHhhcchhHHHHhHHHhhcccccccc
Confidence 888777776422 222222222 223344446666777777888887774
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.3e-11 Score=112.06 Aligned_cols=148 Identities=14% Similarity=0.064 Sum_probs=112.8
Q ss_pred cchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHH-HHHHHHHHHHHHHHh-----hcchhhHHHH
Q 014654 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM-IAAVPNIIGWLIISF-----SKDSSFLFMG 144 (421)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~~~~~~-----~~~~~~l~~~ 144 (421)
...|.+.+++|.+..+.+++.+...++..++.+..|+++||+|||+.+. .+.+..+++.+.... .++.+..++.
T Consensus 243 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~ 322 (402)
T TIGR00897 243 VFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALII 322 (402)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHH
Confidence 3567777889999999999999999999999999999999999988764 333334443333322 2456677778
Q ss_pred HHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhccc
Q 014654 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFI 220 (421)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~~~ 220 (421)
.++.|++.+...+. ...+.|.. +++|+++.++.+....+|..++|.+++.+ ||+..+++.++..++..+...|+
T Consensus 323 ~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 323 AIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 88899888776553 45566764 46899999999999999999999888766 88888888877776665544443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.4e-12 Score=119.30 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=106.4
Q ss_pred cchHHHH-hhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh--cchhhHHHHHHh
Q 014654 71 PTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--KDSSFLFMGRLL 147 (421)
Q Consensus 71 ~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l 147 (421)
..+|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.+..... .+.+.+.+..++
T Consensus 296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (496)
T PRK03893 296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFF 375 (496)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 4466666 5899999999999999999999999999999999999999888877766665544333 233344444555
Q ss_pred hhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhH
Q 014654 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVL 208 (421)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~ 208 (421)
.+.......+...+++.|.+|+++|++++++......+|..+||.+++.+ +|+..+...+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 376 QQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSF 440 (496)
T ss_pred HHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 44443344566777899999999999999999998899999998888765 78877755443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.2e-11 Score=109.81 Aligned_cols=152 Identities=18% Similarity=0.123 Sum_probs=116.3
Q ss_pred cchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHhhh
Q 014654 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRLLEG 149 (421)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G 149 (421)
...|.+.+++|.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++..+....+ +...+ .-++.|
T Consensus 226 ~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g 303 (393)
T PRK09705 226 AWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCG 303 (393)
T ss_pred HHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHH
Confidence 345666667899999999999999999999999999999999999999988877777766554333 22222 234568
Q ss_pred cchhhhhccchhhhcccCC-CCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhhHHHHHHHh-hhccccC
Q 014654 150 FGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIP-GLFFIPE 222 (421)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~w~~~f~~~~~~~~~~~~-~~~~~~e 222 (421)
++.+...+.......+..+ +++|++..++.+....++..++|.+.+++ +|...|++.++..+...+ ...+.||
T Consensus 304 ~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 304 LGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 8877777877767777775 57899999999999999999999888777 477778877666665544 3455666
Q ss_pred Ch
Q 014654 223 SP 224 (421)
Q Consensus 223 ~~ 224 (421)
++
T Consensus 384 ~~ 385 (393)
T PRK09705 384 RF 385 (393)
T ss_pred cc
Confidence 53
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.9e-11 Score=110.63 Aligned_cols=126 Identities=16% Similarity=0.180 Sum_probs=95.6
Q ss_pred chHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhc-
Q 014654 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF- 150 (421)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~- 150 (421)
..|.+.++.|.+.++.+...+...++..++.++.|++.||+|||+.+..+.++..+..+.....++.....+.-.+.|+
T Consensus 253 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (426)
T PRK12307 253 LLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLM 332 (426)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 4566677789999999999999999999999999999999999999998887776665554433322222222233333
Q ss_pred -chhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 151 -GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 151 -~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
+..+..+..+.++.|.+|+++|++++++......+|..++|.+.+++
T Consensus 333 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 333 ATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred HhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 22233345567889999999999999999999999999999988776
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.9e-11 Score=111.28 Aligned_cols=147 Identities=13% Similarity=0.123 Sum_probs=98.2
Q ss_pred cchHHHH-hhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhh--chHHHH-HHHHHHHHHHHHHHHh--hcchhhHHHH
Q 014654 71 PTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSL-MIAAVPNIIGWLIISF--SKDSSFLFMG 144 (421)
Q Consensus 71 ~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~-~~~~~~~~~~~~~~~~--~~~~~~l~~~ 144 (421)
...|.+. ++.|.+..+.++..+.+.++..++.++.|+++||+ +||+.. .....+..++.+...+ .++.+...++
T Consensus 274 ~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 353 (452)
T PRK11273 274 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMAC 353 (452)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHH
Confidence 3556554 45799999999999999999999999999999999 555432 2223333333333222 2344444444
Q ss_pred HHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHH-HHHHhhccc----chHHHHHhhhHHHHHHHhhh
Q 014654 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIM-LAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (421)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~ 217 (421)
.++.|.+..........+..|.+|+++||++.++.+....+|.. .+|.+.+.+ ||+..|++.+..+++.++..
T Consensus 354 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~ 431 (452)
T PRK11273 354 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 431 (452)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 55555543222223345677999999999999999887777754 467766555 89999988776666665533
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.8e-11 Score=108.19 Aligned_cols=140 Identities=16% Similarity=0.122 Sum_probs=114.9
Q ss_pred chHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcc
Q 014654 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (421)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (421)
..|.+.+|.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.+..+++++.+.+++..++.|++
T Consensus 227 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 306 (382)
T PRK11128 227 FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT 306 (382)
T ss_pred HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34555577999999999999999999999999999999999999999999999998888888899999999999999999
Q ss_pred hhhhhccchhhhcccCCCCcchhHhhHHH-HHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHH
Q 014654 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL 213 (421)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~ 213 (421)
.+...+....++.+. +++++++..+..+ ....+|..+||.+++.+ ++ ..++..+.+.+..
T Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 999889888888887 5566788888875 55667778888888776 55 3455555444443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.8e-11 Score=108.52 Aligned_cols=127 Identities=15% Similarity=0.168 Sum_probs=113.2
Q ss_pred cchHHHHhh-hCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHhh
Q 014654 71 PTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD-SSFLFMGRLLE 148 (421)
Q Consensus 71 ~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~ 148 (421)
...|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+.+..+..+.+++.+...+.++ .+.+++..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI 311 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 345556554 8999999999999999999999999999999999999999888888888888877774 88888899999
Q ss_pred hcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
|++.+...+...+++.|.+|+++|+++.++.+....+|..+++.+++.+
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL 360 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887654
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=108.24 Aligned_cols=135 Identities=13% Similarity=0.117 Sum_probs=112.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccch
Q 014654 81 KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVP 160 (421)
Q Consensus 81 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 160 (421)
+.+..+.|.+.++..+...++.+..|++.||+|+|+.+.++.++.+++..+...+++.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666789999999999999999999999999999999999999888888878888999999999999998877766667
Q ss_pred hhhcccCCCCcchhHhhH-HHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHh
Q 014654 161 VYIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (421)
Q Consensus 161 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~ 215 (421)
.++.+..+++.++...+. ++....+|..+++.+++++ ||+..|.+.++..++..+
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 778888888888776665 5677888888888777766 889999887776665544
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.4e-10 Score=105.86 Aligned_cols=149 Identities=12% Similarity=0.146 Sum_probs=112.3
Q ss_pred HHHHhhhCCChhhHHHHHH-HHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH---Hhh-cchhhHHHHHHhh
Q 014654 74 AEIISDLKLTISEFSIFGS-LANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFS-KDSSFLFMGRLLE 148 (421)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s-~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l~ 148 (421)
|.+.+++|.+.++.++... ...++..++.++.|+++||+|+|+.+.++.++.+++.+.. +.. ++.+.+.+.-++.
T Consensus 247 ~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~ 326 (491)
T PRK11010 247 TFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFE 326 (491)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 4456779999999999974 6668999999999999999999998877666555544332 233 3444555556665
Q ss_pred hcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhccccC
Q 014654 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPE 222 (421)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~~~~e 222 (421)
.++.|...+...++..+..+++.++...++.+....+|..+++.+.+.+ ||+..|.+.+++++..++...++++
T Consensus 327 ~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 327 NLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6555666666678888999999999999999998899988776666655 8999999888888877666555544
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-10 Score=110.69 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=126.0
Q ss_pred cchHHHH-hhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhh
Q 014654 71 PTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (421)
Q Consensus 71 ~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (421)
..+|.+. +++|.+...+|++.+.+.+|..++.++.+++.+|+++++.+..+.++++++.+..+++++.+..++.-++.|
T Consensus 239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G 318 (524)
T PF05977_consen 239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAG 318 (524)
T ss_pred HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 4566665 568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHh
Q 014654 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (421)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~ 215 (421)
++.........+.+.+..|++.||++++++.+....+..+|.++.+.+ |-+..+.+.++..++..+
T Consensus 319 ~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~ 388 (524)
T PF05977_consen 319 AAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSAL 388 (524)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 999998888899999999999999999999888888777777777666 777777776654444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-10 Score=107.00 Aligned_cols=170 Identities=18% Similarity=0.176 Sum_probs=139.2
Q ss_pred HHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchH--HHHHHHHHHHHHHHH
Q 014654 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRK--GSLMIAAVPNIIGWL 130 (421)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~ 130 (421)
+++....+.++++. +.......-.+++|++..+...+.-+..+...+|++++|++.||+|.| ++++.+++++.+..+
T Consensus 286 fLia~~l~~dg~~t-i~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~ 364 (477)
T PF11700_consen 286 FLIAYFLYSDGVNT-IISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPL 364 (477)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 33333334455433 222233334568999999999999999999999999999999999999 899988888866666
Q ss_pred HHHh--------hcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----
Q 014654 131 IISF--------SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----- 197 (421)
Q Consensus 131 ~~~~--------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----- 197 (421)
...+ .++.+.+.+.-++.|+..|..++...++.+|..|+++.+...|++....-....+||++.+.+
T Consensus 365 ~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 365 YGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred HHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6655 678888999999999999999999999999999999999999999999999999999998877
Q ss_pred chHHHHHhhhHHHHHHHhhhccccCC
Q 014654 198 NWRVLAVLGVLPCTLLIPGLFFIPES 223 (421)
Q Consensus 198 ~w~~~f~~~~~~~~~~~~~~~~~~e~ 223 (421)
+-|+.+....++.++.++++++++.+
T Consensus 445 ~~r~g~~~l~~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 445 SQRYGFLFLLVLFLIGLILLFFVDVE 470 (477)
T ss_pred CchhHHHHHHHHHHHHHHHHhhccch
Confidence 57888888777777777777776654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-10 Score=96.20 Aligned_cols=171 Identities=16% Similarity=0.203 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Q 014654 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (421)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 129 (421)
..+..........| ....++..-|++++.+|.|.+|...+.+.-.+|..+ +++.|.+.|++|++.++.+|.+...+|.
T Consensus 3 ~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY 80 (250)
T PF06813_consen 3 LSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGY 80 (250)
T ss_pred hhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33333333334444 334455667889999999999999999999999987 5889999999999999999999999998
Q ss_pred HHHHhh-------cchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---c-
Q 014654 130 LIISFS-------KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---N- 198 (421)
Q Consensus 130 ~~~~~~-------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~- 198 (421)
.....+ .++|.+.+..++.|.+.+...........+.|| ++||.+.++.-...+++..+-..+...+ +
T Consensus 81 ~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~ 159 (250)
T PF06813_consen 81 GLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDP 159 (250)
T ss_pred HHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCCh
Confidence 877653 367788888888888877776776666778887 6899999999999999887766555444 2
Q ss_pred hHHHHHhhhHHHHHHHhhhccccCC
Q 014654 199 WRVLAVLGVLPCTLLIPGLFFIPES 223 (421)
Q Consensus 199 w~~~f~~~~~~~~~~~~~~~~~~e~ 223 (421)
-+..++......++.++..++++..
T Consensus 160 ~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 160 SSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred HHHHHHHHHHHHHHHHHHhhheecc
Confidence 3344444444455545555555443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-10 Score=109.14 Aligned_cols=153 Identities=18% Similarity=0.144 Sum_probs=100.6
Q ss_pred chHHHHhhhCCChhhHHH------------HHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhc---
Q 014654 72 TQAEIISDLKLTISEFSI------------FGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--- 136 (421)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~------------~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--- 136 (421)
..|.+.++.|.+..+.+. ...+..++..++.++.++++||+|||++++.+.++.+++.++.++..
T Consensus 310 ~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~ 389 (502)
T TIGR00887 310 NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL 389 (502)
T ss_pred ccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467777788876543211 23344456667888999999999999999888877777666555432
Q ss_pred -chhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc--------------chHH
Q 014654 137 -DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------NWRV 201 (421)
Q Consensus 137 -~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l--------------~w~~ 201 (421)
+...+...-+...++..+..+....+..|.+|.+.|+++.++.+....+|.++++.+.+.+ ++..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 469 (502)
T TIGR00887 390 STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGH 469 (502)
T ss_pred chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchH
Confidence 1111111111111222233455667789999999999999999999999999988776544 1345
Q ss_pred HHHhhhHHHHHHHhhhccccCCh
Q 014654 202 LAVLGVLPCTLLIPGLFFIPESP 224 (421)
Q Consensus 202 ~f~~~~~~~~~~~~~~~~~~e~~ 224 (421)
.|++.+...++..+..+++||++
T Consensus 470 ~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 470 VLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred HHHHHHHHHHHHHHHheEeccCC
Confidence 66666666665555556779874
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-09 Score=101.73 Aligned_cols=143 Identities=10% Similarity=0.072 Sum_probs=107.8
Q ss_pred hHHHHhhhCCChhhHHHHHHHHHH-HHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh------hcchhhHHHHH
Q 014654 73 QAEIISDLKLTISEFSIFGSLANV-GAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF------SKDSSFLFMGR 145 (421)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~r 145 (421)
.+.+.+|.|.+++++|++...... ...++.++.|++.||+|+|+.+..+.++.++..+.... .++...+....
T Consensus 231 ~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (390)
T TIGR02718 231 SKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCS 310 (390)
T ss_pred hhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHH
Confidence 344556789999999999888764 66677899999999999999998877665333332221 12333444555
Q ss_pred HhhhcchhhhhccchhhhcccCCC-CcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHh
Q 014654 146 LLEGFGVGVISYTVPVYIAEIAPQ-NMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (421)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~ 215 (421)
.+.+++.+...+...+...+..++ ++++...++.+....+|..++|.+++.+ |++..|++.+.+.++..+
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 311 AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 666777777777777787777776 8899999999999999999999998876 788888887766665544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-10 Score=108.94 Aligned_cols=127 Identities=11% Similarity=0.058 Sum_probs=105.8
Q ss_pred cchHHHHh-hhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh---cchhhHHHHHH
Q 014654 71 PTQAEIIS-DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---KDSSFLFMGRL 146 (421)
Q Consensus 71 ~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~ 146 (421)
...|.+.+ .+|.++.+.++......++..++.++.|++.||+|||+++..+..+.+++.++..+. ++.+.+.+.-+
T Consensus 282 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (471)
T PRK10504 282 FMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLF 361 (471)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 34555544 589999999999999999999999999999999999999999988888877766653 33334455677
Q ss_pred hhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
+.|++.+...+....++.+..|+++|+.+.++.+....+|..+|+.+++.+
T Consensus 362 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 362 LQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888889999999999999999999999999999998887665
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-10 Score=110.00 Aligned_cols=134 Identities=16% Similarity=0.123 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcch--hhHHHHHHhhhcchhhhhccchhhhcccCC
Q 014654 91 GSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS--SFLFMGRLLEGFGVGVISYTVPVYIAEIAP 168 (421)
Q Consensus 91 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 168 (421)
.....+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+..++....+..|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344556677888999999999999999999999999888888777654 445555677777777888888999999999
Q ss_pred CCcchhHhhHHHHHHHHHHHHHHHhhccc--chHHHHHhhhHHHHHHHhhhccccCCh
Q 014654 169 QNMRGSLGSVNQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLLIPGLFFIPESP 224 (421)
Q Consensus 169 ~~~r~~~~~~~~~~~~~G~~~~~~~~~~l--~w~~~f~~~~~~~~~~~~~~~~~~e~~ 224 (421)
++.|+.++++.+....+|.+++|.+.+.. ++...+++.+...++..+..+++||+.
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999999999999999999988722 455667776666666666667788863
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3e-10 Score=106.78 Aligned_cols=148 Identities=16% Similarity=0.088 Sum_probs=99.2
Q ss_pred cchHHHH-hhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhh--ch-HHHHHHHHHHH--HHHHHHHHhhcchhhHHHH
Q 014654 71 PTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GR-KGSLMIAAVPN--IIGWLIISFSKDSSFLFMG 144 (421)
Q Consensus 71 ~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Gr-r~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~ 144 (421)
...|.+. +++|.+..+.+...+.+.++..++.++.|+++||+ ++ |.......+.. ....+......+.....+.
T Consensus 264 ~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (434)
T PRK11663 264 DWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAAC 343 (434)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence 3455554 67899999999999999999999999999999999 33 33222211111 1111111112233333344
Q ss_pred HHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhc
Q 014654 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (421)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~ 218 (421)
.+..|++...........+.|.+|+++|+.+.++.+....+|..++|.+.+.+ +|+..|++.+++.++..+..+
T Consensus 344 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 344 FFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 44445433222223345678999999999999999999999999998887766 899999888777666655443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=108.12 Aligned_cols=145 Identities=11% Similarity=0.035 Sum_probs=104.5
Q ss_pred HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchH-------HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhh
Q 014654 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRK-------GSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (421)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 148 (421)
+.+++|.+..+.+.+.+++.++..++.++.|+++||+||| ....+..++.++..++....++.+..++.-++.
T Consensus 279 l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~ 358 (476)
T PLN00028 279 FYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILF 358 (476)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999976 223333333334444445555666555556666
Q ss_pred hcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhcc---cchHHHHHhhhHHHHHHHhhhcccc
Q 014654 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF---VNWRVLAVLGVLPCTLLIPGLFFIP 221 (421)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~---l~w~~~f~~~~~~~~~~~~~~~~~~ 221 (421)
+++.+...+...+++.+..| ++|+...++.+.+..+|..+++.+... .+|+..|++.+++.++..+..++++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 359 SIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 76665555556666666654 789999999988888888888877542 2699999888777666666555443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-10 Score=108.25 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=143.7
Q ss_pred HHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhc--hHHHHHHHHHHHHHHHHHHHhhcc
Q 014654 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG--RKGSLMIAAVPNIIGWLIISFSKD 137 (421)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~~~~~~~~~ 137 (421)
....+........+|.+.++.+.+..+.+.+.++..+...++.++.|+++|+.. ++.+..+++++.+++.+.+.++++
T Consensus 308 ~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~ 387 (509)
T KOG2504|consen 308 LFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATT 387 (509)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444555566788899999999999999999999999999999999999988 566777888888999999999999
Q ss_pred hhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhhHHHHH
Q 014654 138 SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTL 212 (421)
Q Consensus 138 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~w~~~f~~~~~~~~~ 212 (421)
++.+.....+.|++.|.........+.|..+.++-..+.|+.....+++..+||++++.+ +|...|+..++..++
T Consensus 388 ~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~ 467 (509)
T KOG2504|consen 388 YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLL 467 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHH
Confidence 999999999999999999998888999999999999999999999999999999999877 588999998888888
Q ss_pred HHhhhcccc
Q 014654 213 LIPGLFFIP 221 (421)
Q Consensus 213 ~~~~~~~~~ 221 (421)
....+++.|
T Consensus 468 s~~~~~~~~ 476 (509)
T KOG2504|consen 468 SAVLLLILR 476 (509)
T ss_pred HHHHHHHhH
Confidence 877666665
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=97.86 Aligned_cols=151 Identities=17% Similarity=0.240 Sum_probs=122.2
Q ss_pred cccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh-cchhhHHHHH
Q 014654 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-KDSSFLFMGR 145 (421)
Q Consensus 67 ~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r 145 (421)
..++.+-|.+++..|.+.+.++++.-+|.++..+|+.+.|+++|| +.|+.+.....+.++..+...+. ++.+..++.-
T Consensus 229 ~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~ 307 (394)
T COG2814 229 ALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALL 307 (394)
T ss_pred hhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 334445677888999999999999999999999999999999999 99999988877777777766654 4555666667
Q ss_pred HhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhcc
Q 014654 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (421)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~~ 219 (421)
++.|+..+.........+.+ ..++.+..+.+++...+++|..+|..+++.+ ++....++.++..++.....+.
T Consensus 308 ~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 308 FLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 77888777766666666777 4469999999999999999999998888776 8888889888887777665443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.1e-10 Score=100.44 Aligned_cols=177 Identities=20% Similarity=0.170 Sum_probs=145.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 014654 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (421)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 125 (421)
++.-...+++.-..+.+|.+.-. ......-.+++|++..+...+.....+...+++++.|+|.||+|.|+++..+.++.
T Consensus 250 ~~~~i~~FLiA~~~~~DGv~til-~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~ 328 (438)
T COG2270 250 GRKNLVLFLIARFFYIDGVNTIL-AMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVIL 328 (438)
T ss_pred cccchHHHHHHHHHHHhhHHHHH-HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHH
Confidence 33345555555555667755422 21122234599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chH
Q 014654 126 IIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWR 200 (421)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~w~ 200 (421)
.+.++...+...-..+.+.-.+.|...|..+...-++..+..|+++-++.+|+++.....+..+||.+.+.+ +-|
T Consensus 329 ~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r 408 (438)
T COG2270 329 SIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSR 408 (438)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchh
Confidence 999998888877777888889999999999999999999999999999999999999999999999988766 567
Q ss_pred HHHHhhhHHHHHHHhhhccccCC
Q 014654 201 VLAVLGVLPCTLLIPGLFFIPES 223 (421)
Q Consensus 201 ~~f~~~~~~~~~~~~~~~~~~e~ 223 (421)
.-+....++..+..+..+.+|++
T Consensus 409 ~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 409 AGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred hHHHHHHHHHHhhHhhEEeecCC
Confidence 76666666666666777777765
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8e-10 Score=103.84 Aligned_cols=151 Identities=12% Similarity=-0.020 Sum_probs=96.3
Q ss_pred chHH-HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH--h--hcchhhHHHHHH
Q 014654 72 TQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS--F--SKDSSFLFMGRL 146 (421)
Q Consensus 72 ~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--~--~~~~~~l~~~r~ 146 (421)
.+|. +.+++|.+..+.+...++..++..+++++.|+++||+|||+.+..+.++.++..+... . .++....+..-.
T Consensus 265 ~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (432)
T PRK10406 265 YMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVM 344 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3555 4566899999999999998888899999999999999999988776555433332221 1 122222222222
Q ss_pred hhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHH-HHHHHHHhhccc---c-hHHHHHhhhHHHHHHHhhhcccc
Q 014654 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV---N-WRVLAVLGVLPCTLLIPGLFFIP 221 (421)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l---~-w~~~f~~~~~~~~~~~~~~~~~~ 221 (421)
+.+++.+...+....++.|++|++.|+.+.|+.+....+ .....|.+...+ + |...+++.++..++..+..++++
T Consensus 345 ~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~ 424 (432)
T PRK10406 345 CALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLH 424 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 232333344445667889999999999999997655443 233455555544 3 55566666565665555544444
Q ss_pred C
Q 014654 222 E 222 (421)
Q Consensus 222 e 222 (421)
+
T Consensus 425 ~ 425 (432)
T PRK10406 425 R 425 (432)
T ss_pred h
Confidence 3
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-10 Score=106.28 Aligned_cols=152 Identities=11% Similarity=0.073 Sum_probs=95.9
Q ss_pred chHHHH-hhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH---HHHHHHHhh--cchhhHHHHH
Q 014654 72 TQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI---IGWLIISFS--KDSSFLFMGR 145 (421)
Q Consensus 72 ~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~---~~~~~~~~~--~~~~~l~~~r 145 (421)
..|.+. +..|.++.+.++..+.+.++..++.+..|+++||+++++....+..+.. ++.+..... .+.+...+.-
T Consensus 273 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (438)
T TIGR00712 273 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICM 352 (438)
T ss_pred hHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 455554 4579999999999999999999999999999999965432222322221 122222222 2333333344
Q ss_pred HhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHH-HHHHHHhhccc----chHHHHHhhhHHHHHHHh-hhcc
Q 014654 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG-IMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFF 219 (421)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G-~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~-~~~~ 219 (421)
++.|++.............|.+|+++|+.+.++.+....+| ..++|.+.+.+ +|...|++.+...++..+ ...+
T Consensus 353 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T TIGR00712 353 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 432 (438)
T ss_pred HHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 44554322222222345779999999999999998776665 45677776655 788888876655555444 4455
Q ss_pred ccCC
Q 014654 220 IPES 223 (421)
Q Consensus 220 ~~e~ 223 (421)
+||+
T Consensus 433 ~~~~ 436 (438)
T TIGR00712 433 MIGE 436 (438)
T ss_pred Hhhc
Confidence 6665
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-09 Score=101.79 Aligned_cols=146 Identities=16% Similarity=0.142 Sum_probs=100.5
Q ss_pred HHHHhhhCCChhhHHHHHHHHH-HHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH---Hhh-cchhhHHHHH---
Q 014654 74 AEIISDLKLTISEFSIFGSLAN-VGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFS-KDSSFLFMGR--- 145 (421)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r--- 145 (421)
+.+.+++|.++++++++.+... ++..++.++.|++.||+|+|+.+..+..+..+..+.. ++. ++.+.+++.-
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE 313 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 4467789999999999987654 5688999999999999999998887776666554433 343 4555555444
Q ss_pred -HhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhcccchHHHHHhhhHHHHHHHhhhcc
Q 014654 146 -LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFF 219 (421)
Q Consensus 146 -~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~w~~~f~~~~~~~~~~~~~~~~ 219 (421)
+..|++.+...+....++.+.+|.++++...+..+.+...+..++..+...+||+..|.+.++++++.++..+.
T Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 314 NLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 45666677778888888888888776655444333333333334444444459999999988887777665443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.4e-10 Score=104.42 Aligned_cols=115 Identities=23% Similarity=0.346 Sum_probs=97.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh-cchhhHHHHHHhhhcchhhhhccchh
Q 014654 83 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-KDSSFLFMGRLLEGFGVGVISYTVPV 161 (421)
Q Consensus 83 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~ 161 (421)
+..+.+++.+...++..++.+++++++||+|+|+++..+.++.+++.+...+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888899999999999999999999999999988888887777665 45667777888999999999999999
Q ss_pred hhcccCC-------CCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 162 YIAEIAP-------QNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 162 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
+++|..+ ++++|.+.++.+....+|..+++.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 45679999999999999999988877655
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.1e-10 Score=103.22 Aligned_cols=146 Identities=15% Similarity=0.056 Sum_probs=112.8
Q ss_pred hhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh-cchhhHHHHHHhhhcchhhhh
Q 014654 78 SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-KDSSFLFMGRLLEGFGVGVIS 156 (421)
Q Consensus 78 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~ 156 (421)
++.+.+....+++.+.+.+.....+++.|++.||+++|+.+..+..+..++.+...++ ++.+.+++..++.|+|.+...
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 316 (395)
T PRK10054 237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA 316 (395)
T ss_pred cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888888888999999999999999999988888888777664 567777788999999998888
Q ss_pred ccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHh-hhccccCCh
Q 014654 157 YTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFIPESP 224 (421)
Q Consensus 157 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~-~~~~~~e~~ 224 (421)
|...+++.+..|++.|+.+.+..+ ...+|..+||.+++.+ +....|++.+....+..+ ...-.+|+|
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARP 388 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence 888889999999999999988655 4557888888888776 556666665444444433 333344443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-10 Score=97.78 Aligned_cols=129 Identities=15% Similarity=0.129 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhH
Q 014654 96 VGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL 175 (421)
Q Consensus 96 ~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~ 175 (421)
+.-.-|.++.+++.||+|||+.+..+.+++++..++...+.+-....+.-+..-++.++.+.+.++|..|.+|.+-|+..
T Consensus 392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatg 471 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATG 471 (528)
T ss_pred HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcc
Confidence 45567889999999999999999999999999999988877655555555555555666777889999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhccc--chHHHHHhhhHHHHHHHhhhccccCCh
Q 014654 176 GSVNQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLLIPGLFFIPESP 224 (421)
Q Consensus 176 ~~~~~~~~~~G~~~~~~~~~~l--~w~~~f~~~~~~~~~~~~~~~~~~e~~ 224 (421)
.|.-..+..+|.++.|+++-.. +-..+..+.+...+++.+...++|-++
T Consensus 472 vGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 472 VGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred hhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence 9999999999999999998333 223344444555556666566666443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.2e-10 Score=103.81 Aligned_cols=131 Identities=17% Similarity=0.199 Sum_probs=93.8
Q ss_pred chHH-HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhch-HHH-HHHHH-HHHHHHHHHHHh--hcchhhHHHHH
Q 014654 72 TQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGS-LMIAA-VPNIIGWLIISF--SKDSSFLFMGR 145 (421)
Q Consensus 72 ~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~-~~~~~-~~~~~~~~~~~~--~~~~~~l~~~r 145 (421)
..|. +.+++|.+..+.++..+.+.++..++.++.|++.||.++ |+. +.... ....++...... ..+.+...+..
T Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (379)
T TIGR00881 238 WSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICL 317 (379)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 3444 456789999999999999999999999999999998643 332 22221 122222222222 23445556667
Q ss_pred HhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHH
Q 014654 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (421)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~ 202 (421)
++.|+......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+ ||++.
T Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 318 FALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred HHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 7777766566666677889999999999999999999999999998887766 66654
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.1e-10 Score=101.50 Aligned_cols=114 Identities=11% Similarity=0.196 Sum_probs=95.2
Q ss_pred cchHHHHhhhCCChhhHHHHHHHHH-HHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh-----------cch
Q 014654 71 PTQAEIISDLKLTISEFSIFGSLAN-VGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----------KDS 138 (421)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----------~~~ 138 (421)
...|.+.+++|.+.++.+.+.++.. ++..++.+++|++.||+|||+.+..+.++.+++..+..+. ++.
T Consensus 230 ~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (356)
T TIGR00901 230 VLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHL 309 (356)
T ss_pred HHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 3455565669999999998888766 6778999999999999999999998888887776655443 345
Q ss_pred hhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHH
Q 014654 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVT 184 (421)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 184 (421)
+.+..+.++.+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 310 LMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 6777788999999999999999999999999999999999877653
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-09 Score=99.85 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=91.3
Q ss_pred cccchHHHHh-hhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHH-HHH---hhcchhhHHH
Q 014654 69 SSPTQAEIIS-DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL-IIS---FSKDSSFLFM 143 (421)
Q Consensus 69 ~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~-~~~---~~~~~~~l~~ 143 (421)
.....|.+.+ .+|.+..+.++....+.++..++.++.|+++||+|||+.+..+.++..+... ... ..+++..+.+
T Consensus 257 ~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (434)
T PRK15075 257 ITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLA 336 (434)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 3344666554 4899999999999999999999999999999999999988876554433222 111 1233444444
Q ss_pred HHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHH-HHHHHHHHHHHHhhccc
Q 014654 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l 197 (421)
..++.|++.+...+....++.|.+|+++|+...++.. .+..++..++|.+.+.+
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i 391 (434)
T PRK15075 337 VELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL 391 (434)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence 4566677777766667788999999999999999853 34444456677766554
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.1e-09 Score=94.69 Aligned_cols=125 Identities=15% Similarity=0.071 Sum_probs=99.1
Q ss_pred hCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccc
Q 014654 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTV 159 (421)
Q Consensus 80 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 159 (421)
+|.++++.++..+.+..+..++.+..+++.||+|+|+.+.++..+..++.++....++.. ...+-++.|++.+..+|..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999888888877776665555433 2345668899999999999
Q ss_pred hhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhh
Q 014654 160 PVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGV 207 (421)
Q Consensus 160 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~ 207 (421)
.+...+..++ +.+.+.++. ....+|..++|.+.+.+ +.+..|++..
T Consensus 252 ~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 252 FSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 9999888874 345566665 55668888888866655 6667666443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.9e-09 Score=99.30 Aligned_cols=136 Identities=13% Similarity=0.180 Sum_probs=106.5
Q ss_pred HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh-----cchhhHHHHHHhhhc
Q 014654 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----KDSSFLFMGRLLEGF 150 (421)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~ 150 (421)
+.+++|.++.+.++......++..++.++.|+++||+|+|+.+.++.++..++.++..+. ++.+.+++.-++.|+
T Consensus 242 ~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (406)
T PRK15402 242 LISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAF 321 (406)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence 456789999999998888888999999999999999999999999888877777766553 356667778899999
Q ss_pred chhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHH
Q 014654 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTL 212 (421)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~ 212 (421)
+.+...+......... ++++||++.+..+....+|..+|+.+++.+ ++....+..++..++
T Consensus 322 g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 386 (406)
T PRK15402 322 GIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLL 386 (406)
T ss_pred HHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHH
Confidence 9988877666655443 458999999999999999999999988877 444433333333333
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.8e-09 Score=96.75 Aligned_cols=174 Identities=17% Similarity=0.125 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 014654 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (421)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 127 (421)
...+.+.+.++.-..|. +.....-..+-++-|++.++..++.....+...+..+.+.++.||+|||+.++.+..+..+
T Consensus 270 ~~~i~~~v~~~qq~sGi--~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~ 347 (485)
T KOG0569|consen 270 PLLIGIVVSFAQQFSGI--NAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAV 347 (485)
T ss_pred HHHHHHHHHHHHHhcCc--ceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 33344444444433333 2333445568888899999999999999999999999999999999999999999888888
Q ss_pred HHHHHHhhc---chh------hHHHHHHhhhcchh-hhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHH----HHh
Q 014654 128 GWLIISFSK---DSS------FLFMGRLLEGFGVG-VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLA----YLL 193 (421)
Q Consensus 128 ~~~~~~~~~---~~~------~l~~~r~l~G~~~g-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~----~~~ 193 (421)
..++....- +.. ..+++.++..++.+ +..|...-+.+|.+|++.|+.++++......+...+- |.+
T Consensus 348 ~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l 427 (485)
T KOG0569|consen 348 ALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPL 427 (485)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777765431 111 12333333333332 2356777889999999999999998777766665443 334
Q ss_pred hcccchHHHHHhhhHHHHHH-HhhhccccCCh
Q 014654 194 GLFVNWRVLAVLGVLPCTLL-IPGLFFIPESP 224 (421)
Q Consensus 194 ~~~l~w~~~f~~~~~~~~~~-~~~~~~~~e~~ 224 (421)
...+|= +.|+...+++++. +..+..+||+.
T Consensus 428 ~~~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 428 QNVIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 444443 5555555555554 44677799984
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=114.49 Aligned_cols=134 Identities=16% Similarity=0.200 Sum_probs=115.4
Q ss_pred HHHhhhCCChh-hHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchh
Q 014654 75 EIISDLKLTIS-EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVG 153 (421)
Q Consensus 75 ~i~~~~~~s~~-~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 153 (421)
.+.+++|.+.. +.+++.+...++..+++++.|+++||+++|+.+.++.++.+++.++..+..+.+.+++..++.|++.+
T Consensus 258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 337 (1146)
T PRK08633 258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAG 337 (1146)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 45677899998 99999999999999999999999999999999999988888888888888888888899999999999
Q ss_pred hhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhhH
Q 014654 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVL 208 (421)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~w~~~f~~~~~ 208 (421)
...+...+++.+..|+++||+++++.+....+|..+++.++..+ ++...|++.+.
T Consensus 338 ~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 338 LFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred HhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999999999999999999999998888887777666544 34445554433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.4e-09 Score=95.61 Aligned_cols=140 Identities=9% Similarity=0.068 Sum_probs=107.7
Q ss_pred hHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcch
Q 014654 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGV 152 (421)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 152 (421)
.|.+.+++|.+.++.+++.+.+.++..++.++.+++.||.+++.......+......++....++.+.+.+..++.|++.
T Consensus 240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~ 319 (394)
T PRK10213 240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTF 319 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 46677889999999999999999999999999999999965444344333334444455556677788888899999999
Q ss_pred hhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHH
Q 014654 153 GVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL 213 (421)
Q Consensus 153 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~ 213 (421)
+...+...+++.+..| +++++..++......+|..+|+.+++.+ |++..++..+...++.
T Consensus 320 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 320 ALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 9999988888988887 5566777777777888888888888776 7777777765544433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-08 Score=94.40 Aligned_cols=118 Identities=17% Similarity=0.293 Sum_probs=95.2
Q ss_pred HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh-----cchhhHHHHHHhhhc
Q 014654 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----KDSSFLFMGRLLEGF 150 (421)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~ 150 (421)
+.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.++.... ++...+++..++.|+
T Consensus 233 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 312 (385)
T TIGR00710 233 YIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGI 312 (385)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999988887777776665543 233445556788899
Q ss_pred chhhhhccchhhhcccCCCCcchhHhhHHHHHHH-HHHHHHHHhh
Q 014654 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVT-IGIMLAYLLG 194 (421)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~G~~~~~~~~ 194 (421)
+.+...+.......|..| ++|+++.++.+.... .|.+.++.++
T Consensus 313 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 313 GNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999899988888888876 688999998776654 4666666666
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5e-09 Score=97.31 Aligned_cols=126 Identities=15% Similarity=0.127 Sum_probs=104.6
Q ss_pred chHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhh-hhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhc
Q 014654 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE-YIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (421)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (421)
..|.+.++.+.++.+.+++.+...++...+..+.+++.| |++.++.+..+.++.+++.++.+++++++.+.+..++.|+
T Consensus 230 ~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 309 (400)
T PRK11646 230 MLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYI 309 (400)
T ss_pred hhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 456665665557788999988888777766666677665 4676777778888888888888888888888788888999
Q ss_pred chhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
+.+...|...+++.+..|+++||++.++.+....+|..+||.+++.+
T Consensus 310 g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l 356 (400)
T PRK11646 310 GSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWL 356 (400)
T ss_pred HHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHH
Confidence 99888899999999999999999999999999999999999998877
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=99.73 Aligned_cols=123 Identities=21% Similarity=0.319 Sum_probs=105.7
Q ss_pred cccchHHH-HhhhCCC-hhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh---cchhhHHH
Q 014654 69 SSPTQAEI-ISDLKLT-ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---KDSSFLFM 143 (421)
Q Consensus 69 ~~~~~~~i-~~~~~~s-~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~ 143 (421)
.....|.+ .+++|.+ ..+.+...+...++..++.++.|++.||+|+|+..........++.+...+. ++....++
T Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (352)
T PF07690_consen 225 FSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLII 304 (352)
T ss_dssp HHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHH
T ss_pred hhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44556665 8889999 7899999999999999999999999999998887777777666666655443 35577777
Q ss_pred HHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHH
Q 014654 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY 191 (421)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 191 (421)
.-++.|++.+...+...+++.|.+|+++|+++.++.+....+|..+||
T Consensus 305 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 305 ALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 888999999999999999999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-08 Score=94.12 Aligned_cols=156 Identities=20% Similarity=0.331 Sum_probs=120.3
Q ss_pred cccccchHHHHhhhC-CChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh-cchhhHHH-
Q 014654 67 GYSSPTQAEIISDLK-LTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-KDSSFLFM- 143 (421)
Q Consensus 67 ~~~~~~~~~i~~~~~-~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~- 143 (421)
+.+....+...++.| .+.+..+.+.++..+.-.+.-...+++..|+|.|+++.++.+..++=..+.+.. ++.+...+
T Consensus 224 ~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~ 303 (400)
T PF03825_consen 224 AAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVAL 303 (400)
T ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 333444555677777 777788888888888888999999999999999999999999999988888877 55544333
Q ss_pred ---HHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHH-HHHHHHHHHHHhhccc----------chHHHHHhhhHH
Q 014654 144 ---GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQL-SVTIGIMLAYLLGLFV----------NWRVLAVLGVLP 209 (421)
Q Consensus 144 ---~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~~~~~l----------~w~~~f~~~~~~ 209 (421)
...+.|+..+..+.....++.+..|++.|+++.+++.. ..++|..+|..+++++ .|...+.+.+..
T Consensus 304 ~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~ 383 (400)
T PF03825_consen 304 QLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVM 383 (400)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 34569999999999999999999999999999999766 4689999999999887 244555555555
Q ss_pred HHHHHhh-hccccC
Q 014654 210 CTLLIPG-LFFIPE 222 (421)
Q Consensus 210 ~~~~~~~-~~~~~e 222 (421)
.++..+. +.+.+|
T Consensus 384 ~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 384 ALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHhhccC
Confidence 4444443 333444
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-07 Score=91.65 Aligned_cols=147 Identities=12% Similarity=0.159 Sum_probs=116.8
Q ss_pred cchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHHHHHHHHHHHHHHHhhcc--------hhhH
Q 014654 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKD--------SSFL 141 (421)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~--------~~~l 141 (421)
.....+.+.+|.+.++...+...+....-+..+++|+++|+ +||++.+.++.++..+|.++.++... ....
T Consensus 9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~ 88 (654)
T TIGR00926 9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLD 88 (654)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence 34445667789999999999999999999999999999996 79999999999999999988876421 1235
Q ss_pred HHHHHhhhcchhhhhccchhhhcccCCCCc---chhHhhHHHHHHHHHHHHHHHhhccc-----------chHHHHHhhh
Q 014654 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNM---RGSLGSVNQLSVTIGIMLAYLLGLFV-----------NWRVLAVLGV 207 (421)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~~~~~l-----------~w~~~f~~~~ 207 (421)
+++-.+.++|.|+.-+...+...|.+++++ |-....++..+.++|..+++.+..++ +|...|.+.+
T Consensus 89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~ 168 (654)
T TIGR00926 89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA 168 (654)
T ss_pred HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence 567788888999999999999999997543 56677788888889988887665443 4888888877
Q ss_pred HHHHHHHhhh
Q 014654 208 LPCTLLIPGL 217 (421)
Q Consensus 208 ~~~~~~~~~~ 217 (421)
+..++..+.+
T Consensus 169 i~m~ia~lvf 178 (654)
T TIGR00926 169 ILMILALIVF 178 (654)
T ss_pred HHHHHHHHHH
Confidence 7666665543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6e-09 Score=96.33 Aligned_cols=141 Identities=11% Similarity=0.175 Sum_probs=102.9
Q ss_pred hHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh-hcchhhHHHHHHhhhcc
Q 014654 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-SKDSSFLFMGRLLEGFG 151 (421)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~ 151 (421)
.|.+.+.+|.++.+.++..+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+..++..++.+++
T Consensus 223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g 302 (382)
T PRK10091 223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAG 302 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34566678999999999999999999999999999999999999999888888887765543 55556666666666766
Q ss_pred hhhhhccchh-hhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhhHHHHHHHh
Q 014654 152 VGVISYTVPV-YIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIP 215 (421)
Q Consensus 152 ~g~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~w~~~f~~~~~~~~~~~~ 215 (421)
.....+.... ...+..+++.++.. ..+....+|..+||.+++.+ +|+..+.+.+...++.+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~ 370 (382)
T PRK10091 303 LFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMS 370 (382)
T ss_pred HHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHH
Confidence 5544443333 34444444555544 33566788888888888765 688888887666555544
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-09 Score=103.21 Aligned_cols=126 Identities=13% Similarity=0.163 Sum_probs=107.6
Q ss_pred chHHH-HhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh----hcchhhHHHHHH
Q 014654 72 TQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF----SKDSSFLFMGRL 146 (421)
Q Consensus 72 ~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~ 146 (421)
..|.+ ++.+|.++.+.++......++..++.++.|++.||+|||+.+..+..+.+++.++..+ ..+++.+....+
T Consensus 277 ~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (485)
T TIGR00711 277 LLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQF 356 (485)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 45544 4558999999999999999999999999999999999999999999888888887763 234566677788
Q ss_pred hhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
+.|++.+...+.......+..|+++|+.+.++.+....+|..+|+.+.+.+
T Consensus 357 l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~ 407 (485)
T TIGR00711 357 IRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI 407 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988877777888889999999999999999999999998877654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.8e-09 Score=97.17 Aligned_cols=122 Identities=13% Similarity=0.080 Sum_probs=101.4
Q ss_pred HHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhh
Q 014654 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGV 154 (421)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 154 (421)
.+++.+|.++.+.|++.+...++..++++..+++.||.++|+++..+. +.++..+..++.++++...+.-++.|++.+.
T Consensus 231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~ 309 (393)
T PRK11195 231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGF 309 (393)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence 456678999999999999999999999999999999999998888775 3445555556677777777788899999988
Q ss_pred hhccchhhhcccCCCCc-chhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 155 ISYTVPVYIAEIAPQNM-RGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 155 ~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
..+...+.+.+..|++. +|++.++.+....+|..++..+.+.+
T Consensus 310 ~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 310 FVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred hhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 88888888888766554 79999999999999988888777654
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.01 E-value=4e-09 Score=98.34 Aligned_cols=141 Identities=11% Similarity=0.090 Sum_probs=96.2
Q ss_pred cccchHHHHhhh--CCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHH-HHHHHHHHHHHHHHHHhhcchhhHHHHH
Q 014654 69 SSPTQAEIISDL--KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS-LMIAAVPNIIGWLIISFSKDSSFLFMGR 145 (421)
Q Consensus 69 ~~~~~~~i~~~~--~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~r 145 (421)
....+|.+.+++ +.+..+.+...+...++..++.++.|+++||++||+. .....++.+++..+....++....+++-
T Consensus 261 ~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (412)
T TIGR02332 261 INIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGI 340 (412)
T ss_pred HHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 445677777765 5677889999999999999999999999999997764 3334444444333222222322222222
Q ss_pred HhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhhHH
Q 014654 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLP 209 (421)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~w~~~f~~~~~~ 209 (421)
.+.+++.....+.......|.+|+++|+.+.++.+....+|..++|.+.+.+ +|++.+++.++.
T Consensus 341 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 341 IMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 2333333333333445557788999999999999999999999999887765 588888766543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-07 Score=85.56 Aligned_cols=104 Identities=16% Similarity=0.156 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCC
Q 014654 91 GSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN 170 (421)
Q Consensus 91 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 170 (421)
.++-+..+.+++++.+.+.|+.|.|+.++++..++....+..-+.+ -+.++++..+.|+|.+..+..-..++.|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 7778888899999999999999999999999999988877775554 666888999999999999999999999999999
Q ss_pred cchhHhhHHHHHHHHHHHHHHHhhc
Q 014654 171 MRGSLGSVNQLSVTIGIMLAYLLGL 195 (421)
Q Consensus 171 ~r~~~~~~~~~~~~~G~~~~~~~~~ 195 (421)
++.+..++.-.....+.++|..+-.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~ 159 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILF 159 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhhe
Confidence 9999999988888888888765543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.4e-09 Score=111.02 Aligned_cols=136 Identities=11% Similarity=0.027 Sum_probs=111.0
Q ss_pred chHHH-HhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh---------------
Q 014654 72 TQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--------------- 135 (421)
Q Consensus 72 ~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--------------- 135 (421)
..|.+ .+.+|.+..+.|++.+.+.+|..+++++.|+++|+.++++.+..+.++.+++.+...+.
T Consensus 247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (1140)
T PRK06814 247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL 326 (1140)
T ss_pred HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence 34444 45689999999999999999999999999999998888777766666666655544443
Q ss_pred -----cchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHh
Q 014654 136 -----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVL 205 (421)
Q Consensus 136 -----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~w~~~f~~ 205 (421)
++.+.+++..++.|++.+...+...+++.+.+|+++||+++++.+....+|..+++++.+.+ ++...+++
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~ 406 (1140)
T PRK06814 327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILF 406 (1140)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 67788888899999999999999999999999999999999999999999988888877655 44555554
Q ss_pred hh
Q 014654 206 GV 207 (421)
Q Consensus 206 ~~ 207 (421)
.+
T Consensus 407 ~~ 408 (1140)
T PRK06814 407 IA 408 (1140)
T ss_pred HH
Confidence 33
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-08 Score=94.29 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=96.7
Q ss_pred HhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhc--chhhHHHHHHhhhcchhh
Q 014654 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGV 154 (421)
Q Consensus 77 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~ 154 (421)
++.+|.+....++......++..++.++.+++.||+|+|+.+.++.++..++.+...+.+ +++.+++..++.|+|.+.
T Consensus 256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGV 335 (448)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 445676655555555555677888999999999999999999999998888887776654 567777778899999999
Q ss_pred hhccchhhhcccCCCC-------cchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 155 ISYTVPVYIAEIAPQN-------MRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 155 ~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
..+...++..|..+.+ ++|...++.+....+|..+|+.+.+.+
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888753 358889999999989988887776543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.9e-09 Score=94.93 Aligned_cols=126 Identities=14% Similarity=0.093 Sum_probs=99.7
Q ss_pred cchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhh-chHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhh
Q 014654 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (421)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (421)
...|.+.++.|.+..+.+.+.+...++..+++++.|++.||+ +||+.+..+.++.+++.+...+.++..... .-.+.|
T Consensus 218 ~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g 296 (355)
T TIGR00896 218 GWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLG 296 (355)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHH
Confidence 346667778899999999999999999999999999999999 567777778788887777776665433322 456789
Q ss_pred cchhhhhccchhhhcccCC-CCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 150 FGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+
T Consensus 297 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 297 LGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred HhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988887777765554 56678888888888888888888887665
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.8e-08 Score=90.22 Aligned_cols=121 Identities=20% Similarity=0.131 Sum_probs=87.8
Q ss_pred HHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH---h-hcchhhHHHHHHhhhc
Q 014654 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---F-SKDSSFLFMGRLLEGF 150 (421)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l~G~ 150 (421)
.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..+..+... . ..+++...++-.+.+.
T Consensus 220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (377)
T PRK11102 220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVG 299 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 35566899999999999999999999999999999999999999888766444333222 2 2345555555555555
Q ss_pred chhhhhccchhhhcccCCCCcchhHhhHHHHH-HHHHHHHHHHhhcc
Q 014654 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLS-VTIGIMLAYLLGLF 196 (421)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~~~~~ 196 (421)
+.+........++.|..| ++++.+.++.+.. ..+|..++++++..
T Consensus 300 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 300 CVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA 345 (377)
T ss_pred HHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555556666667777766 7899998886543 56777788777643
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.4e-09 Score=100.52 Aligned_cols=123 Identities=13% Similarity=0.098 Sum_probs=107.3
Q ss_pred HHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh---cchhhHHHHHHhhhcc
Q 014654 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---KDSSFLFMGRLLEGFG 151 (421)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~ 151 (421)
.+++.+|.++.+.|+....+.++..++.++.|++.||+|+|+.+..+.++.+++.++.... ++.+...+..++.|+|
T Consensus 285 ~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g 364 (495)
T PRK14995 285 ELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFS 364 (495)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 3566689999999999999999999999999999999999999998988888777655432 4556666778999999
Q ss_pred hhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
.|...+.....+.+..|+++++.+.++.+....+|..+|+.+.+.+
T Consensus 365 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 365 AASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred HHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998898999999999999999999999999999998887654
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.9e-09 Score=93.14 Aligned_cols=142 Identities=16% Similarity=0.145 Sum_probs=115.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchh
Q 014654 82 LTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPV 161 (421)
Q Consensus 82 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 161 (421)
.++..+|.+.+...+.-++.-.+..++.+|+|.|+.++++..+.++=.++++++++.+.+.+.+.+.|+-.+........
T Consensus 256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk 335 (412)
T PF01306_consen 256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK 335 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCcchhHhhH-HHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHh-hhccccCC
Q 014654 162 YIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFIPES 223 (421)
Q Consensus 162 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~-~~~~~~e~ 223 (421)
|+.+.+|+|-.+....+ .+.+..+|..+.+.+++.+ |.+..|++.+.+.+...+ ..+.++++
T Consensus 336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 99999998877776666 3677788888877777776 788888877666555444 45555544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-08 Score=94.79 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=109.1
Q ss_pred hhccccccchHHHHhh-hCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhc--chhh
Q 014654 64 FTCGYSSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSF 140 (421)
Q Consensus 64 ~~~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~ 140 (421)
......+...+.+.++ +|.+ +..+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+ +.+.
T Consensus 239 ~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (428)
T PF13347_consen 239 LAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWL 317 (428)
T ss_pred hhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHH
Confidence 3334444445555554 4544 6778888899999999999999999999999999999999999999888876 9999
Q ss_pred HHHHHHhhhcchhhhhccchhhhcccCCC-------CcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQ-------NMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
+++.-++.|++.+...+...++++|..+. ++.|...+......-+|..+++.+.+.+
T Consensus 318 ~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 318 VLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred HHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999973 3347888888888888888877766544
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.1e-09 Score=98.96 Aligned_cols=150 Identities=15% Similarity=0.106 Sum_probs=100.5
Q ss_pred ccchHHH-HhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHH--------HHHHHHHH--HHHHHHHHh-hcc
Q 014654 70 SPTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS--------LMIAAVPN--IIGWLIISF-SKD 137 (421)
Q Consensus 70 ~~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~--------~~~~~~~~--~~~~~~~~~-~~~ 137 (421)
...+|.+ .+++|.+..+.+++.++..++..++.++.|+++||+++|+. +..+.... ++..+.... ..+
T Consensus 281 ~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (465)
T TIGR00894 281 PTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAA 360 (465)
T ss_pred HHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3345654 56689999999999999999999999999999999875532 11111111 111111222 233
Q ss_pred hhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-------chHHHHHhhhHHH
Q 014654 138 SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-------NWRVLAVLGVLPC 210 (421)
Q Consensus 138 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-------~w~~~f~~~~~~~ 210 (421)
....++.-.+.+.+.+...+.......|..| +.+|.+.++.+....+|..++|.+.+.+ +|+..|.+.+...
T Consensus 361 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~ 439 (465)
T TIGR00894 361 FYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVN 439 (465)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHH
Confidence 4444444455555555455544455556666 5899999999999999999999888765 3888888877777
Q ss_pred HHHHhhhccc
Q 014654 211 TLLIPGLFFI 220 (421)
Q Consensus 211 ~~~~~~~~~~ 220 (421)
++..+...++
T Consensus 440 ~i~~i~~~~~ 449 (465)
T TIGR00894 440 ILCVIFYLIF 449 (465)
T ss_pred HHHHHHeeee
Confidence 7766554444
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-08 Score=93.23 Aligned_cols=131 Identities=14% Similarity=0.145 Sum_probs=91.2
Q ss_pred HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhh
Q 014654 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVI 155 (421)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 155 (421)
+.+++|.+..+.+.+.+...++..++.++.+++.||+|||+.+..+.++..++.+...+.++.+..++.-.+.+.|.+..
T Consensus 230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 309 (392)
T PRK10473 230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVG 309 (392)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999988888888777766554444444444444443
Q ss_pred hccchhhhcccCCCCcc-hhHhhHHHHHHHHHHHHHHHhhcccchHHHHHhhhH
Q 014654 156 SYTVPVYIAEIAPQNMR-GSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVL 208 (421)
Q Consensus 156 ~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~G~~~~~~~~~~l~w~~~f~~~~~ 208 (421)
.+.. ...+..|.++| +.+.++...+..+|..+++.+.+.+++.......+.
T Consensus 310 ~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 310 FGVA--MSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred hHHH--HHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 3332 23334444333 555666666666666666666666666544444333
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.8e-09 Score=92.26 Aligned_cols=138 Identities=14% Similarity=0.280 Sum_probs=105.6
Q ss_pred HHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhh----hhchHHHHHH-HHHHHHHHHHHHH
Q 014654 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGRKGSLMI-AAVPNIIGWLIIS 133 (421)
Q Consensus 59 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~~-~~~~~~~~~~~~~ 133 (421)
.|.+....++ .+++.+++|++....+.+--...+...+.+++.|..+| ||||||.++. +.+..+++.++..
T Consensus 45 qf~wA~elsy----~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig 120 (498)
T KOG0637|consen 45 QFGWALELSY----LTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIG 120 (498)
T ss_pred HHHHHHHhcc----ccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhh
Confidence 4555544444 45567889999988888888888888999999999999 5899887775 4666677777777
Q ss_pred hhcchh-----------------hHHHHHHhhhcchhhhhccchhhhcccCCCCcchh-HhhHHHHHHHHHHHHHHHhhc
Q 014654 134 FSKDSS-----------------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS-LGSVNQLSVTIGIMLAYLLGL 195 (421)
Q Consensus 134 ~~~~~~-----------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~~~~~~~ 195 (421)
++.++. .++++-.+.=++.-.....+-+++.|...++++.+ +.+++.....+|..+|..++.
T Consensus 121 ~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 121 YAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 764332 33444445555666778888999999998766666 999999999999999999998
Q ss_pred ccchH
Q 014654 196 FVNWR 200 (421)
Q Consensus 196 ~l~w~ 200 (421)
+.+|+
T Consensus 201 y~~~~ 205 (498)
T KOG0637|consen 201 YLGLY 205 (498)
T ss_pred ccCce
Confidence 88776
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=90.36 Aligned_cols=140 Identities=16% Similarity=0.186 Sum_probs=108.4
Q ss_pred HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhh--chHHHHHH-HHHHHHHHHHHHHhhcc--hhhHHHHHHhhhc
Q 014654 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSLMI-AAVPNIIGWLIISFSKD--SSFLFMGRLLEGF 150 (421)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~~~-~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~ 150 (421)
+.|..|.|..+.++..+.|-++...|.+++|+++||+ |||....+ .+++..++.+..-.+++ ++...++-++.|+
T Consensus 279 L~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf 358 (448)
T COG2271 279 LSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGF 358 (448)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 6678899999999999999999999999999999996 67765544 44444444455555554 4777778888898
Q ss_pred chhhhhccchhhhcccCCCCcchhHhhHHHHHHHH-HHHHHHHhhccc----chHHHHHhhhHHHHHHHh
Q 014654 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (421)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~ 215 (421)
..-+-.-.......|..|++--|.+.|+.+.+..+ |...+....+.+ ||...|.+..+.+++..+
T Consensus 359 ~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~l 428 (448)
T COG2271 359 LIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAIL 428 (448)
T ss_pred HHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHH
Confidence 77666666666788999999999999999998888 777776655555 899988876665555544
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.2e-08 Score=92.89 Aligned_cols=133 Identities=13% Similarity=-0.028 Sum_probs=101.8
Q ss_pred HhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhh
Q 014654 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVIS 156 (421)
Q Consensus 77 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 156 (421)
++.+|.++.+.++..+.+.++..++.++.|++.||+|+|+++..+.++..++.++..+.++.+ .+..-.+.|++.+..+
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~ 365 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY 365 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999998888777776666666542 3456678999999999
Q ss_pred ccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c-hHHHHHhhhHHHHH
Q 014654 157 YTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCTL 212 (421)
Q Consensus 157 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~-w~~~f~~~~~~~~~ 212 (421)
|...+...+..++ +.+.+.++..... +|..++|.+.+.+ | -|..|++..+..+.
T Consensus 366 P~~~s~a~~~~~~-~~~~as~l~~~~~-~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~ 424 (438)
T PRK10133 366 PTIFSLGIKNLGQ-DTKYGSSFIVMTI-IGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_pred HHHHHHHHcccch-hhccchhHHhHHh-ccchHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999874 4566777765433 5555565555544 4 56666654443333
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-08 Score=89.21 Aligned_cols=149 Identities=25% Similarity=0.435 Sum_probs=121.8
Q ss_pred hhhccccccchHHHHhhhCCCh--hhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcc--h
Q 014654 63 GFTCGYSSPTQAEIISDLKLTI--SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD--S 138 (421)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~--~ 138 (421)
.++.....+..+.+..+++.+. .+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+.+.+..+ .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
T COG0477 15 GLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGL 94 (338)
T ss_pred HHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchH
Confidence 3555666677788888887776 58899999999999999999999999999998888888776666777777776 8
Q ss_pred hhHHHHHHhhhcchhhhhccchhhhcccCCC-CcchhHhhHHHH-HHHHHHHHHHHhhccc------chHHHHHhhhHHH
Q 014654 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQ-NMRGSLGSVNQL-SVTIGIMLAYLLGLFV------NWRVLAVLGVLPC 210 (421)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~~~~~~~~l------~w~~~f~~~~~~~ 210 (421)
+.+++.|+++|++.+...+...+++.|+.++ ++|+...+.... ...+|..+++.++..+ +||..|.......
T Consensus 95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 8999999999999999999999999999997 678888888877 5777888887666544 6888666655444
Q ss_pred H
Q 014654 211 T 211 (421)
Q Consensus 211 ~ 211 (421)
.
T Consensus 175 ~ 175 (338)
T COG0477 175 L 175 (338)
T ss_pred H
Confidence 3
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.1e-08 Score=91.62 Aligned_cols=151 Identities=17% Similarity=0.208 Sum_probs=113.1
Q ss_pred cchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhc-----hHHHHHHHHHHHHHHHHHHHhhc----chhhH
Q 014654 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG-----RKGSLMIAAVPNIIGWLIISFSK----DSSFL 141 (421)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~~~~~~~~~~~~~----~~~~l 141 (421)
+..+.+.+++|+++++.....+...+...+ .++.|.++|-+. ||+-++++.++.+++.+..+..+ +....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA 89 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence 456778999999999999988888777654 678999999763 55556667777666666555533 46666
Q ss_pred HHHHHhhhcchhhhhccchhhhcccCC--CCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHh
Q 014654 142 FMGRLLEGFGVGVISYTVPVYIAEIAP--QNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (421)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~ 215 (421)
.+.-++..+|.+.....+-+++.|... ++.||...+.......+|.+++..+++.+ +++..|.+.+++..+..+
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~ 169 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLI 169 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHH
Confidence 677788899999999999999999884 34477888888888888998888887766 778888887766666655
Q ss_pred hhccccC
Q 014654 216 GLFFIPE 222 (421)
Q Consensus 216 ~~~~~~e 222 (421)
..+++.|
T Consensus 170 ~~~~~~~ 176 (433)
T PF03092_consen 170 VALFLLE 176 (433)
T ss_pred HHHHhhh
Confidence 4444433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=84.65 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=99.8
Q ss_pred HHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH-HHHHhhcchhhHHHHHHhhhcchh
Q 014654 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW-LIISFSKDSSFLFMGRLLEGFGVG 153 (421)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~~g 153 (421)
.+++.+|+|+...+.+.+......++.+++.|.++||+|++...+.+..+..+.. ....+ +++.=.++-.+.|+..+
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYS 367 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHH
Confidence 4789999999999999999999999999999999999999998887755554433 23322 33444566778888877
Q ss_pred hhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
.........++...|+++.|.+.+..+...++|..+.|++++.+
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i 411 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI 411 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence 76666677888889999999999999999999999999999888
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.5e-08 Score=89.54 Aligned_cols=149 Identities=12% Similarity=0.091 Sum_probs=99.7
Q ss_pred cchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhch---HHHHHH-HHHHHHHHHHHHHhhcchhhHHHHHH
Q 014654 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR---KGSLMI-AAVPNIIGWLIISFSKDSSFLFMGRL 146 (421)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr---r~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~r~ 146 (421)
.-+|.+.++.|.+.. .+...++..+...++ .++++||.+| |+.... ..++.++.....++.++....++.-.
T Consensus 213 ~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (368)
T TIGR00903 213 IWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIG 288 (368)
T ss_pred HHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 346666677777754 566655555555554 4677777654 333332 34444454445555555555555566
Q ss_pred hhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc--chHHHHHhhhHHHHHHHhhhccccCC
Q 014654 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLLIPGLFFIPES 223 (421)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l--~w~~~f~~~~~~~~~~~~~~~~~~e~ 223 (421)
+.|++.....+...++..|.+|++.|+++.|+.+....+|...+|.+...+ +-+..|.+.++..++..+...+++++
T Consensus 289 l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~ 367 (368)
T TIGR00903 289 IAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIALLLPND 367 (368)
T ss_pred HHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 777777777777888999999999999999999999999998888776544 66677777666666655544444543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-07 Score=89.52 Aligned_cols=115 Identities=14% Similarity=0.149 Sum_probs=90.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh-----hcchhhHHHHHHhhhcchhhhhc
Q 014654 83 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-----SKDSSFLFMGRLLEGFGVGVISY 157 (421)
Q Consensus 83 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~ 157 (421)
+.+..+++.+...++..++.+++++++||+|+|+.+.++..+..++.+...+ .++.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 5566777778777889999999999999999999999888776666655432 34566777778889999999999
Q ss_pred cchhhhcccCC-------CCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 158 TVPVYIAEIAP-------QNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 158 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
...+++.|..+ .++.|...+......-+|..+++.+.+.+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999965 33346688888888888888877766554
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-08 Score=68.36 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=73.5
Q ss_pred hhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 014654 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLF 142 (421)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 142 (421)
|.....++|.+|.+++|.++|.++.|++.+..++||.+|.+...++.++..+++.+..+.+...+..+.+++.++.+...
T Consensus 5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 55666778999999999999999999999999999999999999999998889999999999999999999998877553
|
Note that many members are hypothetical proteins. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-07 Score=85.47 Aligned_cols=124 Identities=15% Similarity=0.060 Sum_probs=95.6
Q ss_pred hHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH---Hh--hcchhhHHHHHHh
Q 014654 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SF--SKDSSFLFMGRLL 147 (421)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~--~~~~~~l~~~r~l 147 (421)
.|.+.+++|.+..+.++......++..++.+..+++.||+|+|+......++.+++.+.. .. .++.+.+++...+
T Consensus 226 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (401)
T PRK11043 226 SPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCV 305 (401)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 566677889999999998888889999999999999999999987766555544443322 22 3455555666778
Q ss_pred hhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
.|++.+...+...+...+..| ++|+++.++.+.....+...++.+.+.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l 354 (401)
T PRK11043 306 MAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSAL 354 (401)
T ss_pred HHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888888988888887777776 6899999999988777777777766655
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-07 Score=89.44 Aligned_cols=114 Identities=14% Similarity=0.174 Sum_probs=87.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh--hcchhhHHHHHHhhhcchhhhhccchh
Q 014654 84 ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF--SKDSSFLFMGRLLEGFGVGVISYTVPV 161 (421)
Q Consensus 84 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~ 161 (421)
.+..+.+.....+...++.+++++++||+|+|+.+..+.++.++..+...+ .++.+.+++..++.|++.+...+...+
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a 342 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS 342 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777888889999999999999999999887766654443322 356777788889999999999999999
Q ss_pred hhcccCCC-------CcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 162 YIAEIAPQ-------NMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 162 ~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
+++|..+. ++.|...+.......+|..+|+.+++.+
T Consensus 343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998862 2346677888888888888888777654
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4e-07 Score=84.61 Aligned_cols=124 Identities=20% Similarity=0.103 Sum_probs=94.9
Q ss_pred HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH-HHHHHHHh--hcchhhHHHHHHhhhcch
Q 014654 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI-IGWLIISF--SKDSSFLFMGRLLEGFGV 152 (421)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~-~~~~~~~~--~~~~~~l~~~r~l~G~~~ 152 (421)
+.+.+|.++.+.+++.....++..+++++.+++.||++++........... +....... ..+.+.+.+..++.|++.
T Consensus 234 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 313 (394)
T PRK11652 234 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGA 313 (394)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 445589999999999999999999999999999999985443332222222 22222222 235566777889999999
Q ss_pred hhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhcccchH
Q 014654 153 GVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWR 200 (421)
Q Consensus 153 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~w~ 200 (421)
+...+...++..|.+| ++++...++.+....+|..+++.+++.+..+
T Consensus 314 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 314 GMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999887 6889999999999999999999998877433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.3e-06 Score=75.61 Aligned_cols=126 Identities=6% Similarity=0.026 Sum_probs=93.3
Q ss_pred chHHHHhhhCC-----ChhhHHHHHHHHHHHHHHH-HHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh--c-------
Q 014654 72 TQAEIISDLKL-----TISEFSIFGSLANVGAMVG-AIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--K------- 136 (421)
Q Consensus 72 ~~~~i~~~~~~-----s~~~~~~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~------- 136 (421)
++-++.|.+.+ +.+.+.++-+...+...+. .++.+++++|++|++++-.....+....+++++. +
T Consensus 25 iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p 104 (472)
T TIGR00769 25 ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHP 104 (472)
T ss_pred HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCC
Confidence 35557777766 3357899988888877776 8999999999999999888777776666665543 1
Q ss_pred ----------------------chhhHHHHHHhhhcchhhhhc-cchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHh
Q 014654 137 ----------------------DSSFLFMGRLLEGFGVGVISY-TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193 (421)
Q Consensus 137 ----------------------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 193 (421)
+.|...+.-+...+-...... .-..+++|.++.++-.|..++.+.+.++|.++++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~ 184 (472)
T TIGR00769 105 TALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT 184 (472)
T ss_pred cHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122223333444444444444 667899999999999999999999999999999987
Q ss_pred hccc
Q 014654 194 GLFV 197 (421)
Q Consensus 194 ~~~l 197 (421)
..++
T Consensus 185 ~~~~ 188 (472)
T TIGR00769 185 IKYF 188 (472)
T ss_pred HHHH
Confidence 7664
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.6e-08 Score=86.87 Aligned_cols=138 Identities=12% Similarity=0.085 Sum_probs=105.0
Q ss_pred HHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhc-------chhh----HHH
Q 014654 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK-------DSSF----LFM 143 (421)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-------~~~~----l~~ 143 (421)
.++++|+.++.+.|...+.+.+...+..+.+|+++||+|.+|+........+++..+..+.. +... ++.
T Consensus 244 ~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 323 (417)
T COG2223 244 YLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLA 323 (417)
T ss_pred HHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999888888888877653 3333 344
Q ss_pred HHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhhHHHHHHHhhh
Q 014654 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGL 217 (421)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~w~~~f~~~~~~~~~~~~~~ 217 (421)
..+..|+|.|.. ..++...++ ++-|.+.++.....++|...-|..-+.. +++..|++.....+++.+..
T Consensus 324 l~~~~G~GnGsv----fk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~ 397 (417)
T COG2223 324 LFVFAGLGNGSV----FKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLT 397 (417)
T ss_pred HHHHhccCcchh----eeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 556666666655 445666665 4778888998888888876655544333 48888887766666665543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.6e-07 Score=78.03 Aligned_cols=167 Identities=17% Similarity=0.155 Sum_probs=127.9
Q ss_pred CchhHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhh-chHHHHHHHH
Q 014654 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAA 122 (421)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~ 122 (421)
+.+..|.+.+.+.+-++.++...+ -+|.+..|-|+|..+.|++.+...+.....++....+++|. .+|+..+...
T Consensus 206 ~~~~aW~vtLfmGlqS~~~Y~~~~----WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~ 281 (395)
T COG2807 206 RSPLAWQVTLFMGLQSLLYYIVIG----WLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL 281 (395)
T ss_pred cCchhHHHHHHHHhhHHHHHHHHH----HHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 334556666666666655554443 37889999999999999999999999999999999999965 5677777788
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCC-CcchhHhhHHHHHHHHHHHHHHHhhccc----
Q 014654 123 VPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQ-NMRGSLGSVNQLSVTIGIMLAYLLGLFV---- 197 (421)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~~~~~l---- 197 (421)
+++.++.+.+.+.+.-..++- -++.|+|.|..++.....+.+..+. ++-++..++.+....+=...||.+.+++
T Consensus 282 ~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~ 360 (395)
T COG2807 282 LLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT 360 (395)
T ss_pred HHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence 888888888877765443333 4999999999999999999988864 4446666666666666667788888887
Q ss_pred -chHHHHHhhhHHHHHHHh
Q 014654 198 -NWRVLAVLGVLPCTLLIP 215 (421)
Q Consensus 198 -~w~~~f~~~~~~~~~~~~ 215 (421)
+|+...+..+...+...+
T Consensus 361 gsw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 361 GSWSAPLVLLALATLLMLI 379 (395)
T ss_pred CChHHHHHHHHHHHHHHHH
Confidence 899888776665555544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.72 E-value=2e-07 Score=88.41 Aligned_cols=130 Identities=20% Similarity=0.144 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhch-----HHH--HHHHHHHHHHHHHHHHh---------hcchhhHHHHHHhhhc
Q 014654 87 FSIFGSLANVGAMVGAIASGQIAEYIGR-----KGS--LMIAAVPNIIGWLIISF---------SKDSSFLFMGRLLEGF 150 (421)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-----r~~--~~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~ 150 (421)
.+++.+...+...+.+++..++-.|.+| +.. +.+|.++.+++.+..++ ..|++++++..++.|+
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 6788888888888888886654444443 333 37788888888777764 4689999999999999
Q ss_pred chhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhh
Q 014654 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (421)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~ 216 (421)
|+....|...+++.+..|++.||++++++.....+|..+++.+.... +|...|...++..++..+.
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVV 463 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877654 6777776665555544443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.4e-05 Score=72.06 Aligned_cols=351 Identities=16% Similarity=0.060 Sum_probs=164.8
Q ss_pred HHHHHHhhhhccccccchHHHHhhhCC-ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH----HHH
Q 014654 56 ALGPIQFGFTCGYSSPTQAEIISDLKL-TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII----GWL 130 (421)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~----~~~ 130 (421)
+.+.++...+.-+.....+.+..+..- +---.+...-.-.+...+.++..|.+.||..|.++...+.+..-+ ++.
T Consensus 8 y~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~ 87 (432)
T PF06963_consen 8 YLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCA 87 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555532 222233333344456678888999999999999987776555433 222
Q ss_pred HHH--hh--c----chhhH---HHHHHhhhcchh-hhhccchhhhcccCC------CCcchhHhhHHHHHHHHHHHHHHH
Q 014654 131 IIS--FS--K----DSSFL---FMGRLLEGFGVG-VISYTVPVYIAEIAP------QNMRGSLGSVNQLSVTIGIMLAYL 192 (421)
Q Consensus 131 ~~~--~~--~----~~~~l---~~~r~l~G~~~g-~~~~~~~~~i~~~~~------~~~r~~~~~~~~~~~~~G~~~~~~ 192 (421)
+.. +. + +.+.. ++.-.+.|.-.- .......+.-.||.. ++.+.+..+...-.--+..+++|+
T Consensus 88 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl 167 (432)
T PF06963_consen 88 LFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPL 167 (432)
T ss_pred HHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 222 11 1 11212 111122221111 111122233345542 223334444444444456677777
Q ss_pred hhccc----chHHHHHhhhHHHHHHHhhhc-c---c-cCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhh
Q 014654 193 LGLFV----NWRVLAVLGVLPCTLLIPGLF-F---I-PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVAS 263 (421)
Q Consensus 193 ~~~~l----~w~~~f~~~~~~~~~~~~~~~-~---~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (421)
+.+.+ +.+....+.+...++....=+ + + ...|. +..+++.++.....+.- ............+...+
T Consensus 168 ~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 243 (432)
T PF06963_consen 168 FVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEE---SSSESSSDPSILKRLWN 243 (432)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCcccccccccc---ccccccchhhHHHHHHH
Confidence 77666 556555555555555544211 1 1 22222 22222111110000000 00000000011111111
Q ss_pred cchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhh
Q 014654 264 SSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMD 341 (421)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d 341 (421)
.-......|+..++++.+.+-+. ..+.++...+. ......+....|+++.. ..-....+.++.+.++..++.+
T Consensus 244 ~~~~~~~~w~~Y~~q~vflas~a-lalLY~TVLsf----~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ 318 (432)
T PF06963_consen 244 PLRTIIRGWRTYFRQPVFLASFA-LALLYFTVLSF----GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMK 318 (432)
T ss_pred HHHHHhccHHHHHhCHHHHHHHH-HHHHHHHHhcC----cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222345666666654444332 22223322222 22233445556988776 5566778889999999999999
Q ss_pred ccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 342 KAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
|+|..+.-..+......++.+....+..+.. ..........+.++.+--.|. -++.....-++.|..|++.||+
T Consensus 319 riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~-----~~~~~s~~~l~~gi~~SR~GL-W~fDL~~~qi~Qe~V~~~~Rg~ 392 (432)
T PF06963_consen 319 RIGLVRAGLWSLWWQWVCLALCVVSFWAPGS-----PFSSISAYLLLGGIALSRIGL-WSFDLAVTQIMQENVPESERGA 392 (432)
T ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHhcCCC-----CchhhHHHHHHHHHHHHHHHH-HhhhHHHHHhhcccCCHHHhhH
Confidence 9999888777777776666555555444332 001112222223332222221 1222233457788999998874
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-07 Score=88.09 Aligned_cols=165 Identities=14% Similarity=0.134 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHhhhhccccccchHHHH-hhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhch---------HHHHHH
Q 014654 51 CVLVVALGPIQFGFTCGYSSPTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR---------KGSLMI 120 (421)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr---------r~~~~~ 120 (421)
.++.+.++.+...+....+...+|.+. +-+|.+..+.|++.++..+...+..+++|.++||.-+ |..-.+
T Consensus 259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i 338 (466)
T KOG2532|consen 259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTI 338 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhH
Confidence 344455555666666666666777655 5589999999999999999999999999999998754 222234
Q ss_pred HHHHHHHHHHHHHhhcchhh--HHH----HHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhh
Q 014654 121 AAVPNIIGWLIISFSKDSSF--LFM----GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (421)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~--l~~----~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 194 (421)
+....++..+..++.++-.. .++ +-.+.|+..++.. .-..|. .+++-+..+++.+....+..+++|.+.
T Consensus 339 ~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~----~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~v 413 (466)
T KOG2532|consen 339 AFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFY----KNHQDI-APQHAGFVMGIINFVGALAGFIAPLLV 413 (466)
T ss_pred HHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhH----hhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 45555555555666553211 111 2223333332222 222232 458889999999999999999999998
Q ss_pred ccc-------chHHHHHhhhHHHHHHHhhhccc
Q 014654 195 LFV-------NWRVLAVLGVLPCTLLIPGLFFI 220 (421)
Q Consensus 195 ~~l-------~w~~~f~~~~~~~~~~~~~~~~~ 220 (421)
+.+ .||++|++.+++.++..+.+.++
T Consensus 414 g~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 414 GIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 877 69999999888877776655444
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-07 Score=88.51 Aligned_cols=146 Identities=15% Similarity=0.152 Sum_probs=116.0
Q ss_pred HhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh----------cchhhHHHHHH
Q 014654 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS----------KDSSFLFMGRL 146 (421)
Q Consensus 77 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~ 146 (421)
.+.+|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.++..-+
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~ 359 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI 359 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence 35789999999999999999999999999999999999999999999998887654311 33344555678
Q ss_pred hhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c-----hHHHHHh---hhHHHHHHH
Q 014654 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-----WRVLAVL---GVLPCTLLI 214 (421)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~-----w~~~f~~---~~~~~~~~~ 214 (421)
+.+++.+........++.+..|+++++...++.+...++|..+++.+++.+ | ++..+.. ..+..++.+
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l 439 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPL 439 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999877665 2 3333322 333344444
Q ss_pred hhhccccC
Q 014654 215 PGLFFIPE 222 (421)
Q Consensus 215 ~~~~~~~e 222 (421)
...+++|+
T Consensus 440 ~~~~llP~ 447 (468)
T TIGR00788 440 PLLHLLPR 447 (468)
T ss_pred HHHHhCCC
Confidence 44456785
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=4e-07 Score=86.95 Aligned_cols=108 Identities=16% Similarity=0.180 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHhhhhhchHHHHHHHHHHHHHHHHHHHhhcc---------hhhHHHHHHhhhcchh
Q 014654 87 FSIFGSLANVGAMVGAIAS----GQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD---------SSFLFMGRLLEGFGVG 153 (421)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~----g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~r~l~G~~~g 153 (421)
.++..++..+...+..++. +++.||++.++.+.+|.++.+++.+..+.+.+ .++++...++.|+|+.
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 5666667776666666666 66666777778899999999999888777654 4578889999999999
Q ss_pred hhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhh
Q 014654 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (421)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 194 (421)
...|...+++.+..|++.||+++|++.....+|..++..+.
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~ 438 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA 438 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888877776665
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.6e-07 Score=84.83 Aligned_cols=125 Identities=10% Similarity=-0.106 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH-hh-----cchhhHHHHHHhhhcchhhhhccchhhhc
Q 014654 91 GSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS-FS-----KDSSFLFMGRLLEGFGVGVISYTVPVYIA 164 (421)
Q Consensus 91 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~-~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 164 (421)
..+..+...+..+++|+++||+|+|+++.++.+...++.+... .. .+++.+.+.-+...++.|........++.
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip 371 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA 371 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence 4445677888999999999999999999988877766654322 22 23555555443333333333334455555
Q ss_pred ccCCC---------------------CcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhhHHHHHHHh
Q 014654 165 EIAPQ---------------------NMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIP 215 (421)
Q Consensus 165 ~~~~~---------------------~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~w~~~f~~~~~~~~~~~~ 215 (421)
+.+|+ ++-|.+.|+.+....+|..+-|.+-+.. ++...|+......+++++
T Consensus 372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 448 (462)
T PRK15034 372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVL 448 (462)
T ss_pred HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 66653 1346677777777778777777543332 566677776655555544
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-07 Score=85.94 Aligned_cols=111 Identities=12% Similarity=0.145 Sum_probs=81.3
Q ss_pred HHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh--c--chhhHHHHHHhhhc
Q 014654 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--K--DSSFLFMGRLLEGF 150 (421)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~--~~~~l~~~r~l~G~ 150 (421)
.+++.+|.++.+.+++.+...++..++.++.|+++||+|+|+.+..+..+...+..+..+. + +.+.+.+.-.+.++
T Consensus 251 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (366)
T TIGR00886 251 FFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFF 330 (366)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999988887776666665555432 2 45444444444444
Q ss_pred chhhhhccchhhhcccCCCCcchhHhhHHHHHHHHH
Q 014654 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG 186 (421)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 186 (421)
+.|...+...+++.+..| +++|.+.|+.+....+|
T Consensus 331 ~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 331 FSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred Hhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 444445555666777776 79999999987766554
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.9e-06 Score=72.78 Aligned_cols=139 Identities=14% Similarity=0.203 Sum_probs=112.5
Q ss_pred HhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhh-hhchHHHHHHHHHHHHHHHHHHH---hhcchhhHHHHHHhhhcch
Q 014654 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE-YIGRKGSLMIAAVPNIIGWLIIS---FSKDSSFLFMGRLLEGFGV 152 (421)
Q Consensus 77 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~ 152 (421)
.+-||.+..|...+...+..|..++-...|++.. |.++|+.-.+++.+..++..+.. ...+.+.+...-++.|++.
T Consensus 236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~ 315 (403)
T PF03209_consen 236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN 315 (403)
T ss_pred hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 4558999999999999999999999999999877 67788877777777766655543 4467888899999999999
Q ss_pred hhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc--------------chHHHHHhhhHHHHHHHh
Q 014654 153 GVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------NWRVLAVLGVLPCTLLIP 215 (421)
Q Consensus 153 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l--------------~w~~~f~~~~~~~~~~~~ 215 (421)
|.......+...+...+++.|..+|.++....++..++..+++.+ +|-.+|.+.++..++.+.
T Consensus 316 G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 316 GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888877777776554 355666665554444443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.7e-08 Score=84.91 Aligned_cols=153 Identities=13% Similarity=0.123 Sum_probs=120.1
Q ss_pred hhccccccchHH-HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhc--hHHHHHHHHHHHHHHHHHHHhhcchhh
Q 014654 64 FTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG--RKGSLMIAAVPNIIGWLIISFSKDSSF 140 (421)
Q Consensus 64 ~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (421)
...++.-|.++. +.|.+..+..++|+..--..+.+.++..+.|.++||++ |-.....+++..++.+....+++++.+
T Consensus 284 ~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~ 363 (464)
T KOG3764|consen 284 SSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQ 363 (464)
T ss_pred chHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHH
Confidence 455566677776 55667755558888888888999999999999999999 544445667777777788889999999
Q ss_pred HHHHHHhhhcchhhhhccchhhhcccCCCC------cchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHH
Q 014654 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQN------MRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (421)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~ 210 (421)
+.+-++..|++.+.......-......+.+ --|...++...++++|..+||.+++.+ |++|...+.++..
T Consensus 364 L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n 443 (464)
T KOG3764|consen 364 LWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILN 443 (464)
T ss_pred HhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHH
Confidence 999999888888877776666666665543 346888999999999999999999888 8888777777666
Q ss_pred HHHHhh
Q 014654 211 TLLIPG 216 (421)
Q Consensus 211 ~~~~~~ 216 (421)
++...+
T Consensus 444 ~iyapv 449 (464)
T KOG3764|consen 444 LIYAPV 449 (464)
T ss_pred HHHHHH
Confidence 665443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-06 Score=67.44 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=92.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhh
Q 014654 83 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVY 162 (421)
Q Consensus 83 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 162 (421)
++..--.-.++.+....+.+++.+.+.+++|.|+.+++|.+++.+-.... +-++.+.++.+-.+.|++.+..++....+
T Consensus 35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~y 113 (156)
T PF05978_consen 35 SAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTY 113 (156)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHH
Confidence 33333445667777788888999999999999999999999988654443 56678889999999999999999999999
Q ss_pred hcccCCCCcchhHhhHHHHHHHHHHHHHHHhh
Q 014654 163 IAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (421)
Q Consensus 163 i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 194 (421)
+.+..++++|++..+++-.....+.++|.++.
T Consensus 114 lt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 114 LTSYSTEETIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888877776654
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-06 Score=80.20 Aligned_cols=124 Identities=14% Similarity=-0.011 Sum_probs=93.4
Q ss_pred cchHHHHhhh--CCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhh
Q 014654 71 PTQAEIISDL--KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (421)
Q Consensus 71 ~~~~~i~~~~--~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 148 (421)
..++...++. +.+....+...+.+..+..++.++.+++.||+++|+++.++.++..+..++..+.++... +..-.+.
T Consensus 253 s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~ 331 (410)
T TIGR00885 253 TFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLC 331 (410)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence 3445554443 444555566777777888999999999999999999999998888888888888777544 5677888
Q ss_pred hcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
|++.+..+|...+...+..+++.+.....+.. ..+|..+.|.+.+.+
T Consensus 332 glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~--~~~Gga~~p~l~G~~ 378 (410)
T TIGR00885 332 SAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM--AIIGGGIVPPLQGFI 378 (410)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH--HHhccchHHHHHHHH
Confidence 89999999999999999998655433333333 238888888877665
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.7e-08 Score=87.10 Aligned_cols=148 Identities=19% Similarity=0.231 Sum_probs=122.8
Q ss_pred cchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhc
Q 014654 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (421)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (421)
..+-.-.+|++..+.-.|.....-..|-.+.-++.+++.+|+|+-+++..++.+..+=.+..++.+|.|..+...+++|+
T Consensus 392 tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgi 471 (618)
T KOG3762|consen 392 TFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGI 471 (618)
T ss_pred HHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHH
Confidence 33334467777677777877777888888899999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccchhhhcccCCCCcchhHhhHHHHH-HHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhc
Q 014654 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLS-VTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (421)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~ 218 (421)
..+..+.+..+|+++..||+-|..+.++.+.. .++|-.+|.++++.+ +-|..|.+.++.+++.++...
T Consensus 472 t~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 472 THALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887544 356666666666655 778888887776666655443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.7e-06 Score=78.29 Aligned_cols=114 Identities=13% Similarity=0.112 Sum_probs=74.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcc--hhhHHHHHHhhhcchhhhhccch
Q 014654 83 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD--SSFLFMGRLLEGFGVGVISYTVP 160 (421)
Q Consensus 83 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~ 160 (421)
+++..+.+.+.+.++..++.+++++++||+|+|+.+..+..+.++..++..+.++ ...+++.-++.|++.+...+...
T Consensus 261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~ 340 (460)
T PRK11462 261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW 340 (460)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778888899999999999999999999887665554444444333322 22344455667887777777667
Q ss_pred hhhcccCC-------CCcchhHhhHHHHHHHHHHHHHHHhhcc
Q 014654 161 VYIAEIAP-------QNMRGSLGSVNQLSVTIGIMLAYLLGLF 196 (421)
Q Consensus 161 ~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 196 (421)
+++.|..+ .++.|...+......-+|..+++.+++.
T Consensus 341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~ 383 (460)
T PRK11462 341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW 383 (460)
T ss_pred HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766 2223554566556666666666555543
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-07 Score=84.14 Aligned_cols=173 Identities=18% Similarity=0.095 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHH--------HHH-HHHHHHHHHHHHHHHhhhhhchHHHHHH
Q 014654 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSI--------FGS-LANVGAMVGAIASGQIAEYIGRKGSLMI 120 (421)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~--------~~s-~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 120 (421)
..++..+...|+........+..+..+.+.+|+.+++... ... +...++..+-.+...++|+.|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 4556667777777777777777788888888876654333 111 1112223355566778999999999999
Q ss_pred HHHHHHHHHHHHHhhcc----hhhHHH----HHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHH
Q 014654 121 AAVPNIIGWLIISFSKD----SSFLFM----GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL 192 (421)
Q Consensus 121 ~~~~~~~~~~~~~~~~~----~~~l~~----~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 192 (421)
|.+++.+..+..+...| ...+++ ..++.-+|- ......+-+|.+|.+-|+..-++.....-+|.++|..
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGP---n~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~ 460 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGP---NATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF 460 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCC---CceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence 99999999988887655 122222 233333332 2344556789999999999999999988888888866
Q ss_pred hhccc---------chHHHHHhhhHHHHHHHhhhccccCChH
Q 014654 193 LGLFV---------NWRVLAVLGVLPCTLLIPGLFFIPESPR 225 (421)
Q Consensus 193 ~~~~l---------~w~~~f~~~~~~~~~~~~~~~~~~e~~~ 225 (421)
.-..+ +.|+.+++.+.+.++..+.-+++||+..
T Consensus 461 ~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 461 GFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred HhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 54433 7889999999999988888888998854
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.5e-06 Score=71.01 Aligned_cols=97 Identities=18% Similarity=0.236 Sum_probs=76.4
Q ss_pred ccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhh
Q 014654 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (421)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (421)
+|.+-.+-+.++....++|.+.....-...+...+.|-++|+.|||+.-+.-.+.+.++++ .-.++.+-.++++|.+.|
T Consensus 57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGG 135 (454)
T KOG4332|consen 57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGG 135 (454)
T ss_pred CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhh
Confidence 4555567788888899998888777777888889999999999999987765555555544 446788999999999999
Q ss_pred cchhhhhccchhhh-cccC
Q 014654 150 FGVGVISYTVPVYI-AEIA 167 (421)
Q Consensus 150 ~~~g~~~~~~~~~i-~~~~ 167 (421)
+..+..+..--++. .|.-
T Consensus 136 iaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 136 IATSLLFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 99998888776654 4443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.3e-06 Score=80.32 Aligned_cols=110 Identities=21% Similarity=0.277 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchHHH-------HHHHHHHHHHHHHHHH-----hh-----cchhhHHHHHHhhh
Q 014654 87 FSIFGSLANVGAMVGAIASGQIAEYIGRKGS-------LMIAAVPNIIGWLIIS-----FS-----KDSSFLFMGRLLEG 149 (421)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~-------~~~~~~~~~~~~~~~~-----~~-----~~~~~l~~~r~l~G 149 (421)
.+++.+...+...+.+++.+++.||+|+|+. +.+|.++.+++.+..+ ++ .+.++++..-++.|
T Consensus 311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g 390 (489)
T PRK10207 311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS 390 (489)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence 3566667777788899999999999999973 6777777776654321 21 35677788899999
Q ss_pred cchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhcc
Q 014654 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF 196 (421)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 196 (421)
+|.+...+...+++.+..|++.++.+++++.....+|..+|..++..
T Consensus 391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~ 437 (489)
T PRK10207 391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATF 437 (489)
T ss_pred HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887743
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.6e-09 Score=101.11 Aligned_cols=152 Identities=17% Similarity=0.151 Sum_probs=96.3
Q ss_pred cchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH--h---hcc-----hhh
Q 014654 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS--F---SKD-----SSF 140 (421)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--~---~~~-----~~~ 140 (421)
...+.+.++.+.++. -.......+...++.+....+.||+|||++++.+.++.+++.+..+ . .++ ...
T Consensus 274 ~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T PF00083_consen 274 YYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILS 351 (451)
T ss_pred ccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345567777777766 2222233344556667777999999999999999888888777664 1 121 122
Q ss_pred HHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHh-hhHHHHHHHh
Q 014654 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVL-GVLPCTLLIP 215 (421)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~-~~~~~~~~~~ 215 (421)
+............+..+....+..|.+|.+.|+.+.++......++..+++.+...+ +-...+.+ .++..+..++
T Consensus 352 i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~ 431 (451)
T PF00083_consen 352 IVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIF 431 (451)
T ss_pred ceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhh
Confidence 221221111112234566668889999999999999998888888888777765554 21223344 4444444455
Q ss_pred hhccccCCh
Q 014654 216 GLFFIPESP 224 (421)
Q Consensus 216 ~~~~~~e~~ 224 (421)
.++++||+.
T Consensus 432 ~~~~lpET~ 440 (451)
T PF00083_consen 432 VYFFLPETK 440 (451)
T ss_pred eeEEEeeCC
Confidence 677899984
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.5e-05 Score=73.42 Aligned_cols=116 Identities=16% Similarity=0.234 Sum_probs=93.1
Q ss_pred hCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhc--chhhHHHHHHhhhcchhhhhc
Q 014654 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGVISY 157 (421)
Q Consensus 80 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~ 157 (421)
+|-+..+..+.......+..++.+++.++.+|+|+|+++..+.++..++.++..+.+ +.+.+++..++.++|.+...+
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 455556667778888888888899999999999999999999999999999988865 678888889999999999999
Q ss_pred cchhhhcccCCC-------CcchhHhhHHHHHHHHHHHHHHHhhc
Q 014654 158 TVPVYIAEIAPQ-------NMRGSLGSVNQLSVTIGIMLAYLLGL 195 (421)
Q Consensus 158 ~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~ 195 (421)
...++++|..+- ++-|...+......=+|..++..+.+
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g 391 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG 391 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988753 22256666666666666666654443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-06 Score=57.69 Aligned_cols=63 Identities=14% Similarity=0.243 Sum_probs=54.4
Q ss_pred hhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q 014654 62 FGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (421)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 124 (421)
.....+...|.+|...++.|+|+.++|.+.++..+...++.+++|.++||+++++..+....+
T Consensus 12 ~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 12 YFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 333556667888888899999999999999999999999999999999999998887766544
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00018 Score=63.32 Aligned_cols=134 Identities=14% Similarity=0.131 Sum_probs=85.4
Q ss_pred HHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhh-----hhchHHHHHH-HHHHHHHHHH
Q 014654 57 LGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE-----YIGRKGSLMI-AAVPNIIGWL 130 (421)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~~~~-~~~~~~~~~~ 130 (421)
+-+.+.|.-.+... .+|.+.+.-|+|-++.+...-++. - ..--+.+.++.| |+||||..++ +..+.+..+.
T Consensus 38 ~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~-P-~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~ml 114 (510)
T KOG3574|consen 38 FLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW-P-FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFML 114 (510)
T ss_pred HHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh-H-HHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHH
Confidence 34456688888877 889999888988888765433322 1 234567888999 9999987654 3444444444
Q ss_pred HHHhh-----------cchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHh
Q 014654 131 IISFS-----------KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193 (421)
Q Consensus 131 ~~~~~-----------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 193 (421)
..+.. ++...+...-++.-+..+.-..+.-.+.-....+++-|-+......+...|..++..+
T Consensus 115 lLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 115 LLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred HHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcce
Confidence 44432 1222222233455555555556666677777778888888777777777777766544
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-05 Score=74.28 Aligned_cols=137 Identities=12% Similarity=-0.002 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc-hHHHHHHHHHHHHHHHHHHHhhcc---------------------hhhHHHHH
Q 014654 88 SIFGSLANVGAMVGAIASGQIAEYIG-RKGSLMIAAVPNIIGWLIISFSKD---------------------SSFLFMGR 145 (421)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~~~~~~~~~~~~---------------------~~~l~~~r 145 (421)
.+....+.+...+.+++..++.+|+| ||++..++.++.+++.....+.++ .+..++.-
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF 387 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence 34455556666677788889999999 577778998888888777765432 26677888
Q ss_pred HhhhcchhhhhccchhhhcccCCC--CcchhHhhHHHHHHHHHHHHHHHhhccc------chHHHHHhhhHHHHHHHh-h
Q 014654 146 LLEGFGVGVISYTVPVYIAEIAPQ--NMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIP-G 216 (421)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l------~w~~~f~~~~~~~~~~~~-~ 216 (421)
.+.|+..+.....-++++++..++ ++.|..+|+.+.+..+..++..+..+.+ +-.+.+.++++..+++.+ .
T Consensus 388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~ 467 (477)
T TIGR01301 388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA 467 (477)
T ss_pred HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence 999999999999999999999995 4559999999999999998887665553 334677777777777765 4
Q ss_pred hccccCCh
Q 014654 217 LFFIPESP 224 (421)
Q Consensus 217 ~~~~~e~~ 224 (421)
++.+|+.+
T Consensus 468 ~~~~~~~~ 475 (477)
T TIGR01301 468 LILLPRPR 475 (477)
T ss_pred HHhCCCCC
Confidence 55567654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.4e-06 Score=78.50 Aligned_cols=169 Identities=16% Similarity=0.158 Sum_probs=121.2
Q ss_pred HHHhhhhccccccchHHHHh-hhCCCh---hhHHHHHHHHHHHHHHHHHHHHHhhhhhch-HHHHHHHHHHHHHHHHHHH
Q 014654 59 PIQFGFTCGYSSPTQAEIIS-DLKLTI---SEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLIIS 133 (421)
Q Consensus 59 ~~~~~~~~~~~~~~~~~i~~-~~~~s~---~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~~ 133 (421)
.|..++.........|.... -++-+. .+.++....+.++..+++.+.|.+..+++| |+.++++.++..+++-+++
T Consensus 319 ~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama 398 (599)
T PF06609_consen 319 SFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMA 398 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHH
Confidence 34444444333444554433 344443 357888888999999999999999998887 5555677666655433333
Q ss_pred h--hcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc--------------
Q 014654 134 F--SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-------------- 197 (421)
Q Consensus 134 ~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-------------- 197 (421)
. .+|....+..-++.|++.|...........-..|+++-+.+.++....-.+|..+|..+...+
T Consensus 399 ~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~ 478 (599)
T PF06609_consen 399 AVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVA 478 (599)
T ss_pred HccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHH
Confidence 3 346666677789999999999988888888888999999999999888888877775553211
Q ss_pred ----------------------------------------------------chHHHHHhhhHHHHHHHhhhccccCChH
Q 014654 198 ----------------------------------------------------NWRVLAVLGVLPCTLLIPGLFFIPESPR 225 (421)
Q Consensus 198 ----------------------------------------------------~w~~~f~~~~~~~~~~~~~~~~~~e~~~ 225 (421)
++|++|+....++++.++..+++++..+
T Consensus 479 ~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~ 558 (599)
T PF06609_consen 479 PAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDK 558 (599)
T ss_pred HHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 3788888888888888888888887655
Q ss_pred HH
Q 014654 226 WL 227 (421)
Q Consensus 226 ~~ 227 (421)
++
T Consensus 559 ~m 560 (599)
T PF06609_consen 559 YM 560 (599)
T ss_pred hh
Confidence 43
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.6e-06 Score=74.34 Aligned_cols=128 Identities=13% Similarity=0.091 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCC
Q 014654 90 FGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQ 169 (421)
Q Consensus 90 ~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 169 (421)
+.-+-.+...+..+.+.+..+|+..+.=...+.++..++.++.+++++.+.=+++-.+.+++.|........+.. .+++
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~ 142 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK 142 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc
Confidence 444444556667777888889887655566677788889999999999998889999999998888877776543 5553
Q ss_pred CcchhHhhHHHHHHHHHHHHHHHhhccc-----chHHHHHhhhHHHHHHHhhhc-cccC
Q 014654 170 NMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLF-FIPE 222 (421)
Q Consensus 170 ~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~w~~~f~~~~~~~~~~~~~~~-~~~e 222 (421)
...+-+..+.+.+.++|+..-..+ +-|..+++...+.++..+.++ .+|.
T Consensus 143 ----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 143 ----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred ----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345667777777777776544322 446666666655555544444 3443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.1e-05 Score=72.52 Aligned_cols=160 Identities=16% Similarity=0.062 Sum_probs=100.9
Q ss_pred hhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcch-----
Q 014654 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS----- 138 (421)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~----- 138 (421)
...+......+.+.+..|.+.+. .+...+..+...++..+...+.||+|||+.++.+...+.++.++.+.....
T Consensus 309 tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~ 387 (513)
T KOG0254|consen 309 TGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYP 387 (513)
T ss_pred hCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCC
Confidence 44455566777888888877554 555666666777788888999999999999999999999998887754211
Q ss_pred --------hhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhh
Q 014654 139 --------SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLG 206 (421)
Q Consensus 139 --------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~ 206 (421)
..+...-+.......+..+....+..|.+|.+-|+++.++......+...+-....... ++...|...
T Consensus 388 ~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f 467 (513)
T KOG0254|consen 388 NSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYF 467 (513)
T ss_pred CcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 11122222222333344455567889999999999998886555544433322111111 223444443
Q ss_pred -hHHHHHHH-hhhccccCCh
Q 014654 207 -VLPCTLLI-PGLFFIPESP 224 (421)
Q Consensus 207 -~~~~~~~~-~~~~~~~e~~ 224 (421)
++..+... ...+++||+.
T Consensus 468 ~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 468 GGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred HHHHHHHHHHHheEEcccCC
Confidence 33333334 4667789984
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00011 Score=68.74 Aligned_cols=134 Identities=14% Similarity=0.164 Sum_probs=83.7
Q ss_pred hHHH-HhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH-----hhcchhhHHHHHH
Q 014654 73 QAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS-----FSKDSSFLFMGRL 146 (421)
Q Consensus 73 ~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~r~ 146 (421)
.|.+ ++.+|.+..+.++.......+..+++.+.+++.++.++++.......+..++.++.. ..++++..++..+
T Consensus 241 ~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~ 320 (413)
T PRK15403 241 SPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTS 320 (413)
T ss_pred ChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 4544 555699999999998888888888888888876554444433322222222322222 1234444567788
Q ss_pred hhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhh
Q 014654 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGV 207 (421)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~w~~~f~~~~ 207 (421)
+.|+|.+...+......- .-.+..+|++.++.+.....+...++.+++++ +-+..|...+
T Consensus 321 l~~~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 383 (413)
T PRK15403 321 LYAFGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLA 383 (413)
T ss_pred HHHHHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 889998888887764332 11233578888888777777777777766655 3344444433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8e-06 Score=71.77 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=114.3
Q ss_pred ccccchHHH-HhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhc--hHHHHHHHHHHHHHHHHHHHhhcchhhHHHH
Q 014654 68 YSSPTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG--RKGSLMIAAVPNIIGWLIISFSKDSSFLFMG 144 (421)
Q Consensus 68 ~~~~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (421)
......+.+ .+.+|.++.|.|-+.+...++..+.+....+..||.. .+-.+..++.+..-..+..+.++....+.++
T Consensus 279 ~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~ 358 (451)
T KOG2615|consen 279 GLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLG 358 (451)
T ss_pred HHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHH
Confidence 333334444 4779999999999999999999999999999999988 7888888888888788888889999999999
Q ss_pred HHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
-.+-.+..+...+....++....|+++||.+.|+......++-.+||++++.+
T Consensus 359 s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i 411 (451)
T KOG2615|consen 359 STLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVI 411 (451)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence 99999999999999999999999999999999999999999999999999665
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.8e-05 Score=73.20 Aligned_cols=107 Identities=13% Similarity=0.135 Sum_probs=69.2
Q ss_pred hHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHhhcc-CChHHHHHhhHHHHHHHHHHHHHHHhhcccc
Q 014654 299 INGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKA-GRRLLLLISSSGMAASFFLVSVAFFLEGFVS 374 (421)
Q Consensus 299 ~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (421)
++.+..+++.++. +.|+++.+ .......+...++.+++|+++||+ |||+.+..+.++..++.+++.... ..
T Consensus 25 ~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~--~~--- 99 (493)
T PRK15462 25 FYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE--IH--- 99 (493)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh--cc---
Confidence 4556666666664 46887766 455566677788999999999999 999999999998888876554210 00
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCC--CCC
Q 014654 375 EDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELG--KPN 420 (421)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~rg 420 (421)
......++.+...+.+. ..+...++++|.+|++ .|+
T Consensus 100 ---------~~~~~l~l~li~iG~G~-~~~~~~alv~elfp~~~~~R~ 137 (493)
T PRK15462 100 ---------PSFLYLSLAIIVCGYGL-FKSNVSCLLGELYEPTDPRRD 137 (493)
T ss_pred ---------hhHHHHHHHHHHHhccc-ccccHHHHHHHHCCCCCcccc
Confidence 01112222222233222 2455678999999986 564
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.2e-05 Score=69.74 Aligned_cols=130 Identities=16% Similarity=0.084 Sum_probs=103.1
Q ss_pred hccccccchHHHHhh-hCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 014654 65 TCGYSSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM 143 (421)
Q Consensus 65 ~~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (421)
........++.+.+| .|.+..+.+...+.+..+..+|.++..++..|+...|.+.+..++..+-++..+++++... +.
T Consensus 251 ~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~-~~ 329 (422)
T COG0738 251 AEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVA-LY 329 (422)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHH-HH
Confidence 334444556666666 8899999999999999999999999999999999999999999888888888889988544 44
Q ss_pred HHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
+-++.|+..+..+|...+...+..+ ++ ....+..-.+..+|..+-|.+.+++
T Consensus 330 ~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i 381 (422)
T COG0738 330 ALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVI 381 (422)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHH
Confidence 5678899999999999999999998 33 3344444555666777777777666
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.5e-05 Score=64.85 Aligned_cols=256 Identities=13% Similarity=0.150 Sum_probs=151.7
Q ss_pred hhCCChhhHH-HHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhc
Q 014654 79 DLKLTISEFS-IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISY 157 (421)
Q Consensus 79 ~~~~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 157 (421)
+.+++..|.. -+.-...-.+.+.-++.=.+.|-.-.|+++++-.+.......+..+.++.+.+=+.-+..|... ....
T Consensus 35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~t-AaEI 113 (433)
T KOG3810|consen 35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPAT-AAEI 113 (433)
T ss_pred CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHH-HHHH
Confidence 4566666542 2333444455666677777899998899998887778888888889999999999999999976 4566
Q ss_pred cchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc------chHHHHHhhhHHHHHHHhhhccccCChHHHHHcC
Q 014654 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMG 231 (421)
Q Consensus 158 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l------~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 231 (421)
+.++++-+..+++++-++.+.-..+.-.|...|..++..+ ++...-.+......++....+++|..++.+.-+.
T Consensus 114 AYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~ 193 (433)
T KOG3810|consen 114 AYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHR 193 (433)
T ss_pred hhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhc
Confidence 7899999999999999999999888888888888777666 3444444555555555566677777664333222
Q ss_pred CHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHh
Q 014654 232 MTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA 311 (421)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
++++.. .......+ . ..+..+..+.....-...+.+..+++ .++...+.+....++++-...|...+-+
T Consensus 194 ~~~~~~--v~~~e~~~--~---~~~~~~~l~~~~~~l~~~l~~~y~np----~ll~WSlWwAl~scg~~QV~nY~Q~LW~ 262 (433)
T KOG3810|consen 194 LEDKIS--VGDLEEMN--P---QASYMSYLRGAFVLLWRDLQECYSNP----RLLKWSLWWALASCGYYQVTNYTQILWK 262 (433)
T ss_pred ccccce--eccchhcC--c---cchhhHHHHHHHHHHHHHHHHHhcCc----hhhhhHHHHHHhhchhHHHHHHHHHHHH
Confidence 222110 00000000 0 00000000000011111222333333 2333334444444556666677766666
Q ss_pred hcCCCchh----HHHHHHHHHHHHHHHHHHHHhhccCCh
Q 014654 312 NAGISSSN----VATFGLGVVQVVATGVNTWLMDKAGRR 346 (421)
Q Consensus 312 ~~g~~~~~----~~~~~~~~~~~~~~~~~g~l~d~~~~~ 346 (421)
+..-.+.. ..=.+..+.++++.+..|.+.-.+.|+
T Consensus 263 ~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~ 301 (433)
T KOG3810|consen 263 EVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRW 301 (433)
T ss_pred hhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchh
Confidence 55422222 222344556677788888886556655
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.7e-05 Score=68.98 Aligned_cols=121 Identities=11% Similarity=0.205 Sum_probs=109.0
Q ss_pred HHhhhCCChhhHHHHHHHHHHHHHHHHHHHH-HhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhh
Q 014654 76 IISDLKLTISEFSIFGSLANVGAMVGAIASG-QIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGV 154 (421)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g-~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 154 (421)
+...++++..+.+...+.......+++++.. .+...+|-|+++..|+..-.+..+..+++++.|+......+.++. +.
T Consensus 268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~~ 346 (463)
T KOG2816|consen 268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-GI 346 (463)
T ss_pred EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-cc
Confidence 5677999999999999998888888888887 788889999999999999999999999999999999998888874 57
Q ss_pred hhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 155 ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 155 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
..|...+.+..+.+++++|++.++....-.+...++|.+-+.+
T Consensus 347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 8888999999999999999999999999999999988877655
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.9e-05 Score=70.64 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=62.3
Q ss_pred HHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHH-HHHHHHHHHHHHhh
Q 014654 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA-AVPNIIGWLIISFS 135 (421)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~-~~~~~~~~~~~~~~ 135 (421)
+..+...+...|.++.+.+++|++++++|.+...-.+...++.|++|.++||+-+||.++++ +++...+.++..+.
T Consensus 21 ~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv 97 (618)
T KOG3762|consen 21 LFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV 97 (618)
T ss_pred eeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence 33445667777888899999999999999999999999999999999999999876666655 66666666666654
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.6e-05 Score=72.36 Aligned_cols=150 Identities=11% Similarity=-0.002 Sum_probs=98.8
Q ss_pred HHHHHHhhhhccccccchHHHHhh-hCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh----hchHHHHHHHHHHHHHHH-
Q 014654 56 ALGPIQFGFTCGYSSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRKGSLMIAAVPNIIGW- 129 (421)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~~~~~~~~~~~~~- 129 (421)
++..+......+.....+|.+.++ .|.|..+.+.+.+.+.++.+++.+++|+++|| ..+|..+...+.++.+..
T Consensus 279 ~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~ 358 (495)
T KOG2533|consen 279 SLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGA 358 (495)
T ss_pred HHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 333344444555556667777777 56899999999999999999999999999999 777877777766665544
Q ss_pred HHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcc-hhHhhHHHHHHHHHHHHHHHhhcc-c----chHHHH
Q 014654 130 LIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR-GSLGSVNQLSVTIGIMLAYLLGLF-V----NWRVLA 203 (421)
Q Consensus 130 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~G~~~~~~~~~~-l----~w~~~f 203 (421)
......++......+-...+.+.+...+.......+...+..| -...+....+.+.+.+++|.+-.. . .|-..|
T Consensus 359 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f 438 (495)
T KOG2533|consen 359 ISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVF 438 (495)
T ss_pred HHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHH
Confidence 4444444455444445555556667777777888887765544 334444555555555554443322 2 566666
Q ss_pred Hh
Q 014654 204 VL 205 (421)
Q Consensus 204 ~~ 205 (421)
..
T Consensus 439 ~~ 440 (495)
T KOG2533|consen 439 YM 440 (495)
T ss_pred HH
Confidence 43
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0048 Score=58.15 Aligned_cols=115 Identities=12% Similarity=0.122 Sum_probs=74.7
Q ss_pred ChhhHHHHHHHHHH-HHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh---------cc---------------
Q 014654 83 TISEFSIFGSLANV-GAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---------KD--------------- 137 (421)
Q Consensus 83 s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---------~~--------------- 137 (421)
.++.+.++-....+ +..+......+++++++|.+++-+....+.....++++. ++
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 45556666665444 345567788999999999998887766665555555442 11
Q ss_pred -------hhhHHHHHHhhhcchhhhhc-cchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 138 -------SSFLFMGRLLEGFGVGVISY-TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 138 -------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
.|.+.+.-+..-+-...... .-..+..|.++.++-.|..++.+.+.++|.++++.+...+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122222222222222 3477889999999999999999999999999887766544
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.014 Score=53.88 Aligned_cols=125 Identities=10% Similarity=0.070 Sum_probs=86.6
Q ss_pred hHHHHhhhCC---ChhhHHHHHHHHHH-HHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh---------cc--
Q 014654 73 QAEIISDLKL---TISEFSIFGSLANV-GAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---------KD-- 137 (421)
Q Consensus 73 ~~~i~~~~~~---s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---------~~-- 137 (421)
+-.+.+.+.+ .++.+.++-+..-+ +..+..++.+++.+++.+.+++-.....+....+++++. ++
T Consensus 46 lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~ 125 (509)
T COG3202 46 LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPE 125 (509)
T ss_pred HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHH
Confidence 4446666654 45567888888877 677888999999999999999887777777766666652 11
Q ss_pred ---------------------hhhHHHHHHhhhcchhhhhc-cchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhc
Q 014654 138 ---------------------SSFLFMGRLLEGFGVGVISY-TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195 (421)
Q Consensus 138 ---------------------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 195 (421)
.|...+.-...-+-.+.... .-.....|.++.++-.|..++++.+.+++..++..+..
T Consensus 126 ~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~ 205 (509)
T COG3202 126 FSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTS 205 (509)
T ss_pred HHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 02222222222222222222 33556789999999999999999999999999888877
Q ss_pred cc
Q 014654 196 FV 197 (421)
Q Consensus 196 ~l 197 (421)
++
T Consensus 206 ~~ 207 (509)
T COG3202 206 WL 207 (509)
T ss_pred HH
Confidence 76
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00067 Score=62.45 Aligned_cols=104 Identities=14% Similarity=0.283 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh---cch------hhHHHHHHhhhcchhhhhccchhhhcccCCCC---cchhHhhHHHHHH
Q 014654 116 GSLMIAAVPNIIGWLIISFS---KDS------SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN---MRGSLGSVNQLSV 183 (421)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~---~~~------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 183 (421)
|++.++.++..+|.++..++ +.. +.++++-.+.++|.|+.-|...++++|.++++ +|.+...++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788888888888885443 222 57888999999999999999999999999865 4567788899999
Q ss_pred HHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhcc
Q 014654 184 TIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (421)
Q Consensus 184 ~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~~ 219 (421)
++|..++..+..++ +|.+.|.+.++..+++++.++.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999888877 7999999988777777665444
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.2e-05 Score=67.72 Aligned_cols=107 Identities=14% Similarity=0.061 Sum_probs=80.7
Q ss_pred hHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCC
Q 014654 299 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 376 (421)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (421)
-+.+..-.+.+.+.++.++.. +......++..+++++.|++.||++|++++.+|..+..++.+..+...++
T Consensus 49 r~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~F------- 121 (493)
T KOG1330|consen 49 RYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHF------- 121 (493)
T ss_pred hhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHH-------
Confidence 334444445555556776655 78888899999999999999999999999999999999998888865222
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 377 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
|..+++-.+.+++-+ ...|+...+++|.+|.+.|++
T Consensus 122 --------wq~~l~R~~vGiGeA-s~~~ia~s~IaD~f~~~~Rs~ 157 (493)
T KOG1330|consen 122 --------WQVLLCRGFVGIGEA-SYSPIAPSLIADSFPDDKRSR 157 (493)
T ss_pred --------HHHHHHHHHhccchh-hhcccchhHhhhcCcchhhhH
Confidence 344455555555543 447888899999999999985
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00019 Score=65.02 Aligned_cols=114 Identities=19% Similarity=0.194 Sum_probs=84.0
Q ss_pred hCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHH--HH---HHHHHHHhhcchhhHHHHHHhhhcchhh
Q 014654 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP--NI---IGWLIISFSKDSSFLFMGRLLEGFGVGV 154 (421)
Q Consensus 80 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~--~~---~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 154 (421)
+.-..++..+....|.+|-.++.--...+ |+ |++.+...+- .. +.....-+.++.|..++.-+..|+..|.
T Consensus 276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa 351 (402)
T PF02487_consen 276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGA 351 (402)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhH
Confidence 44456778899999998877765433221 33 3333333222 22 2222333467889999999999999999
Q ss_pred hhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 155 ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 155 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
.+......+.|-.++++|-.+++....+-++|..++.+++-.+
T Consensus 352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00032 Score=64.83 Aligned_cols=106 Identities=8% Similarity=-0.012 Sum_probs=79.5
Q ss_pred hHHHHHhHHHHHhhcCCCchh---HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccC
Q 014654 299 INGVLFYSSNIFANAGISSSN---VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSE 375 (421)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (421)
-...++..|++.++.|+++.+ .....+..+..++.+++|+++||+|.|+++..+.+...+..+++++..
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~-------- 113 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT-------- 113 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--------
Confidence 345566778888889998777 556666788899999999999999999999999999888888887642
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 376 DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
......+.-++++++-+..+ ..+.++...+|++.|++
T Consensus 114 -------Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~r 150 (511)
T TIGR00806 114 -------SVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQR 150 (511)
T ss_pred -------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHH
Confidence 12333444445555544443 66789999999998874
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00078 Score=64.89 Aligned_cols=143 Identities=13% Similarity=0.085 Sum_probs=101.8
Q ss_pred hHHHHhhh-CCChhh-HHH-HHHHHHHHHHHHHHHHHHhhhhhchH--------HHHHHHHHHHHHHHHHHHhhcchhhH
Q 014654 73 QAEIISDL-KLTISE-FSI-FGSLANVGAMVGAIASGQIAEYIGRK--------GSLMIAAVPNIIGWLIISFSKDSSFL 141 (421)
Q Consensus 73 ~~~i~~~~-~~s~~~-~~~-~~s~~~~~~~~~~~~~g~l~dr~Grr--------~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (421)
+.+|.+.+ |.+.++ ... +.+++.++..+|.+..|.+..-.-+| +..+....+..++.++.++.-.-..+
T Consensus 376 ~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~p~~~L 455 (591)
T PTZ00207 376 ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTLPKAAL 455 (591)
T ss_pred HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHCCccHh
Confidence 56788888 663332 222 78888899999999888877221121 22333333366666666665443689
Q ss_pred HHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHH-HHhhccc--------------c---hHHHH
Q 014654 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLA-YLLGLFV--------------N---WRVLA 203 (421)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~-~~~~~~l--------------~---w~~~f 203 (421)
.+.-++.|++.|..++.....++|.|. |+-|+...+...+..+|..+- ..+.+.+ | .|..|
T Consensus 456 ~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~ 534 (591)
T PTZ00207 456 PLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPL 534 (591)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHH
Confidence 999999999999999999999999999 999999999888888888775 3333322 1 67888
Q ss_pred HhhhHHHHHHHhh
Q 014654 204 VLGVLPCTLLIPG 216 (421)
Q Consensus 204 ~~~~~~~~~~~~~ 216 (421)
++.+..+++..+.
T Consensus 535 ~v~~~~~~~g~~~ 547 (591)
T PTZ00207 535 AFLLGLSFLAFIT 547 (591)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777776654
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00089 Score=64.76 Aligned_cols=146 Identities=23% Similarity=0.289 Sum_probs=102.5
Q ss_pred HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhh---HHHHHHhhhcch
Q 014654 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF---LFMGRLLEGFGV 152 (421)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~r~l~G~~~ 152 (421)
...++|.+..-. ...............+.+.|++|||.....+.++..++.++.++...... ..+...+..++.
T Consensus 344 ~~~~lg~~~~~~---~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (521)
T KOG0255|consen 344 NVSGLGGNIYLN---FTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFI 420 (521)
T ss_pred hhhhcCchHHHH---HHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 344455444332 22333344555566689999999999999999999999999998765443 555666666666
Q ss_pred hhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhcccc--hHH-HHHh-hhHHHHHHHhhhccccCCh
Q 014654 153 GVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN--WRV-LAVL-GVLPCTLLIPGLFFIPESP 224 (421)
Q Consensus 153 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~--w~~-~f~~-~~~~~~~~~~~~~~~~e~~ 224 (421)
+..+.....+..|.+|...|..+.+.......+|.+++|.+..... +.. .+.+ .....+...+...++||+.
T Consensus 421 ~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~ 496 (521)
T KOG0255|consen 421 GSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETK 496 (521)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccC
Confidence 7777777899999999999999999999999999999998875441 121 1112 2233333344557888874
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00049 Score=58.53 Aligned_cols=115 Identities=15% Similarity=-0.030 Sum_probs=75.5
Q ss_pred hhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhcc
Q 014654 295 QLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGF 372 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (421)
..+..+....|.|.+-++.|+++.+ .......++..+ .++.|.+.|++|.+.++.+|.+...++...+.........
T Consensus 14 ~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~ 92 (250)
T PF06813_consen 14 CSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIP 92 (250)
T ss_pred hcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccC
Confidence 3344677888999999999999888 334444566655 4888999999999999999999999999888765443221
Q ss_pred ccCCcchhhHHHHHHHHHHHHHHHHHhccc-ccchhhhccccCCCCCCCC
Q 014654 373 VSEDSRFYSILGILSLVGLVTVVISFSLGV-GAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~rg~ 421 (421)
......++++.+..+.+.++ .........+.||. .||+
T Consensus 93 ----------~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~ 131 (250)
T PF06813_consen 93 ----------SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGT 131 (250)
T ss_pred ----------ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCc
Confidence 01122333333334444333 22333445578885 6875
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00054 Score=46.52 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=46.7
Q ss_pred hhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhH
Q 014654 296 LSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSS 354 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 354 (421)
++......-|.+.++++.|+++.+ ....+..+..+++.++.|+++||.++++.......
T Consensus 13 f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 13 FAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 334556666788888899998877 66677788999999999999999999887665443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.011 Score=54.68 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=78.2
Q ss_pred HHHHHHHhhhhccccccchHHHHhh--hCCChhhHHHHHHHHHHHHHHHHHHHHHhhh-----hhchHHHHHHH-HHHHH
Q 014654 55 VALGPIQFGFTCGYSSPTQAEIISD--LKLTISEFSIFGSLANVGAMVGAIASGQIAE-----YIGRKGSLMIA-AVPNI 126 (421)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~~~~~-~~~~~ 126 (421)
..+-+++.|.-.+.....+|.+.++ -++|.+|.+...-+ ..-+ -.-+++.++.| |+||||..++- -.+.+
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla-~~Pf-SlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g 82 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLA-SYPF-SLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSG 82 (544)
T ss_pred HHHHHHHcCcccccccccchhhhccccCCCChhHheeeeee-echh-HHHHhhhhhhhhhcccccCCcchhhhHHHHHHH
Confidence 3455678888888876778988888 78888887653211 1111 12344555555 89999987653 33344
Q ss_pred HHHHHHHhhc----------------------chh--hHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHH
Q 014654 127 IGWLIISFSK----------------------DSS--FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLS 182 (421)
Q Consensus 127 ~~~~~~~~~~----------------------~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 182 (421)
+..+..+..- +.. .+...-++.=+-.+.--.+.-.+.-....+++++.+......+
T Consensus 83 ~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG 162 (544)
T PF13000_consen 83 ILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVG 162 (544)
T ss_pred HHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhH
Confidence 4333333221 000 1112222222223333334445556666788888888887777
Q ss_pred HHHHHHHHHHhh
Q 014654 183 VTIGIMLAYLLG 194 (421)
Q Consensus 183 ~~~G~~~~~~~~ 194 (421)
.+.|..++..+-
T Consensus 163 ~~~Gyfls~tvF 174 (544)
T PF13000_consen 163 QTAGYFLSFTVF 174 (544)
T ss_pred hhhhHHHHHHHH
Confidence 777777765543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0003 Score=54.29 Aligned_cols=81 Identities=10% Similarity=0.063 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhccccc
Q 014654 325 LGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGA 404 (421)
Q Consensus 325 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (421)
..++.+++.++.+++.||++||+.+..+.....++.+.+... .+ .+......++.+.+.+ ...+
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---~~------------~~~~~~~~~~~g~~~~-~~~~ 70 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS---SN------------ITVLIIARFLQGFGAA-FALV 70 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh---cc------------HHHHHHHHHHHHHHHH-HHHH
Confidence 456788899999999999999999888887777766655432 11 1222233333333333 2245
Q ss_pred chhhhccccCCCCCCCC
Q 014654 405 IPWVIMSEASELGKPNQ 421 (421)
Q Consensus 405 ~~~~~~~e~~p~~~rg~ 421 (421)
....+..|.+|++.|++
T Consensus 71 ~~~~~~~~~~~~~~~~~ 87 (141)
T TIGR00880 71 AGAALIADIYPPEERGV 87 (141)
T ss_pred hHHHHHHHHCChhhhhH
Confidence 67788999999998874
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.007 Score=58.35 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=115.6
Q ss_pred cccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHHHHHHHHHHHHHHHhhcc--------
Q 014654 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKD-------- 137 (421)
Q Consensus 67 ~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~-------- 137 (421)
+...+.+..+.+++|.+...+.-..+.+.-......+.+++++|- +||-+++.++.++..++.++..++..
T Consensus 55 g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~ 134 (571)
T KOG1237|consen 55 GLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFM 134 (571)
T ss_pred cchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence 445667778889999998888888899988888999999999996 58999999998888888655544211
Q ss_pred -----------------hhhHHHHHHhhhcchhhhhccchhhhcccCC---CCc---chhHhhHHHHHHHHHHHHHHHhh
Q 014654 138 -----------------SSFLFMGRLLEGFGVGVISYTVPVYIAEIAP---QNM---RGSLGSVNQLSVTIGIMLAYLLG 194 (421)
Q Consensus 138 -----------------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~~G~~~~~~~~ 194 (421)
...+..+.-+..+|.|+.-+...++-+|-++ +++ +...+.++....++|..++..+.
T Consensus 135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~ 214 (571)
T KOG1237|consen 135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVL 214 (571)
T ss_pred ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHH
Confidence 1255666778888999999999999999998 322 23667788888888888887666
Q ss_pred ccc----chHHHHHhhhHHHHHHHhhh
Q 014654 195 LFV----NWRVLAVLGVLPCTLLIPGL 217 (421)
Q Consensus 195 ~~l----~w~~~f~~~~~~~~~~~~~~ 217 (421)
.+. +|.+.|.+.....+++++++
T Consensus 215 vyiq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 215 VYIQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred HhhhhcccceeeccHHHHHHHHHHHHH
Confidence 555 89988888766655554433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0046 Score=57.24 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=94.0
Q ss_pred ccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH---hhc-------chh
Q 014654 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---FSK-------DSS 139 (421)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~-------~~~ 139 (421)
......+...-|+++..+|..-+...+....+.....++.+|+|..+.=.++.....+...++. +.+ +..
T Consensus 278 ~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~ 357 (432)
T PF06963_consen 278 GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAY 357 (432)
T ss_pred cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Confidence 3444445555699999999999999999999999999999999998887777665443333332 222 233
Q ss_pred hHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
.++.+-.+.=+|.=+.......++.|..|+++||...+.-....++--.+...++-.+
T Consensus 358 ~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 358 LLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444445555566667777888999999999999999998888777777766665544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00031 Score=69.07 Aligned_cols=82 Identities=17% Similarity=0.070 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHH
Q 014654 286 IGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV 363 (421)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 363 (421)
+...+..+.+.........-.+.+.++++++..+ .......++.+++.++.+++.||.+||+.+.++.++++++.++.
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 3333344444333344455566777778887666 56667788999999999999999999999999999999999988
Q ss_pred HHHH
Q 014654 364 SVAF 367 (421)
Q Consensus 364 ~~~~ 367 (421)
++..
T Consensus 116 alph 119 (633)
T TIGR00805 116 SLPH 119 (633)
T ss_pred hChH
Confidence 8765
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.027 Score=54.05 Aligned_cols=121 Identities=18% Similarity=0.077 Sum_probs=71.6
Q ss_pred HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHH-HHHHHH-HHHHHH----Hhhcch-hhHHHHHHhh
Q 014654 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI-AAVPNI-IGWLII----SFSKDS-SFLFMGRLLE 148 (421)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~-~~~~~~----~~~~~~-~~l~~~r~l~ 148 (421)
+.--+|-+....+.+.+++..|.++|+.+.+++.++.-++....- +..+.+ ++..+. ++...+ ..++..-++.
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 120 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLI 120 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445578888899999999999999999999988744333332211 111111 111111 111111 1223345667
Q ss_pred hcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
|+..|+..|....+..+... ++-+...|-......+|.++|.++.+++
T Consensus 121 ~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 121 GLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 88888888887766655332 2234556666777777777777766554
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0087 Score=56.20 Aligned_cols=144 Identities=15% Similarity=0.236 Sum_probs=103.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh----------hcchhhHHHHHHhhhc
Q 014654 81 KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF----------SKDSSFLFMGRLLEGF 150 (421)
Q Consensus 81 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l~G~ 150 (421)
|.++...|.+..+..++..++..+.....-++.-|+++..+.++.++..+.-.. .++.+..+.--++..+
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~ 330 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV 330 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence 488888999998888899999999988888888899988887777666554221 1222333334566666
Q ss_pred chhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---------c---hHHHHHhhhHHHHHHHhhhc
Q 014654 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---------N---WRVLAVLGVLPCTLLIPGLF 218 (421)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---------~---w~~~f~~~~~~~~~~~~~~~ 218 (421)
..+..+-....+++|.+|+..-|...++.....++|..++..++..+ + -.+..++..+..++.+....
T Consensus 331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~ 410 (433)
T PF03092_consen 331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLF 410 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 66677777788999999999999999999999999988888877665 1 22334444555555555565
Q ss_pred cccCCh
Q 014654 219 FIPESP 224 (421)
Q Consensus 219 ~~~e~~ 224 (421)
++|+..
T Consensus 411 lLp~~~ 416 (433)
T PF03092_consen 411 LLPPQK 416 (433)
T ss_pred HcCCCc
Confidence 677653
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.044 Score=51.00 Aligned_cols=103 Identities=20% Similarity=0.336 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHhh---hhhchHHHHHHHHHHHHHHHHHHHhh------------------cchhhHHHHHHhhh
Q 014654 91 GSLANVGAMVGAIASGQIA---EYIGRKGSLMIAAVPNIIGWLIISFS------------------KDSSFLFMGRLLEG 149 (421)
Q Consensus 91 ~s~~~~~~~~~~~~~g~l~---dr~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G 149 (421)
.-...+|..+++.+.+.+. +++||++.+.++.++..+++++.-.. +++...++.-++.|
T Consensus 285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G 364 (461)
T KOG3098|consen 285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG 364 (461)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence 3333444455555566665 46889999999988888887776553 13557777889999
Q ss_pred cchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhh
Q 014654 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (421)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 194 (421)
++-+......+.++.+.. +++|..+.++...-..++..++....
T Consensus 365 ~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 365 FGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred hHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999 58888888887766666665554443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.021 Score=53.38 Aligned_cols=84 Identities=10% Similarity=0.029 Sum_probs=45.2
Q ss_pred chhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhcc----------cchH--HHHH
Q 014654 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF----------VNWR--VLAV 204 (421)
Q Consensus 137 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----------l~w~--~~f~ 204 (421)
.++..++.-++.|++.+.......++.+ .+|++ .+..+..+.+++++++.++.-. ..++ .-|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 3556667778899999888888887766 45533 3334444444444443322211 1122 2233
Q ss_pred hhhHHHHHHHhhhccccCChH
Q 014654 205 LGVLPCTLLIPGLFFIPESPR 225 (421)
Q Consensus 205 ~~~~~~~~~~~~~~~~~e~~~ 225 (421)
+..++.++.++.+..+++.|-
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 344445555555556666653
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.021 Score=52.15 Aligned_cols=105 Identities=23% Similarity=0.144 Sum_probs=75.4
Q ss_pred hhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhch-HHHHHHHHHHHHHHHHHHHhh----cchhhHHHHHHhhhcch
Q 014654 78 SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLIISFS----KDSSFLFMGRLLEGFGV 152 (421)
Q Consensus 78 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~ 152 (421)
..-|.+....|++.....++..+++...|.+.||... |.+..+......++.+..... ...+.+.....+.|.+.
T Consensus 294 ~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~ 373 (480)
T KOG2563|consen 294 CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFG 373 (480)
T ss_pred ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhh
Confidence 3445666788999999999999999999999999875 555665555555553322222 23456666788889999
Q ss_pred hhhhccchhhhcccCCCCcchhHhhHHHHH
Q 014654 153 GVISYTVPVYIAEIAPQNMRGSLGSVNQLS 182 (421)
Q Consensus 153 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 182 (421)
.+..|....+-.|..-|..-+.-.|+.+..
T Consensus 374 ~~~~Pig~ElgvE~TyPv~E~tSsGll~~~ 403 (480)
T KOG2563|consen 374 TGYLPIGFELGVETTYPVAEGTSSGLLNLS 403 (480)
T ss_pred cCCCCcceeeeeeeccccCCcccceeEEee
Confidence 899999999988887665555555555443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.058 Score=50.09 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchH-------HHHHHHHHHHHHHHHHHHhh----------cchhhHHHHHHhhh
Q 014654 87 FSIFGSLANVGAMVGAIASGQIAEYIGRK-------GSLMIAAVPNIIGWLIISFS----------KDSSFLFMGRLLEG 149 (421)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr-------~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l~G 149 (421)
.++..+...+.-.+.+++..++..+.++| .=+-+++.+.+.+.++.... .+.++++..-++++
T Consensus 326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s 405 (498)
T COG3104 326 PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQS 405 (498)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 46778888888888888888888885554 22455666666666655443 25788999999999
Q ss_pred cchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhc
Q 014654 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195 (421)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 195 (421)
+|+=...|+..+++....|+.-.+..++++-.....|..++..++.
T Consensus 406 ~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 406 FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 9999999999999999999999999999999888888888877776
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.013 Score=49.38 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=35.4
Q ss_pred CcchhHhhHHHHHHHHHHHHH--HHhhc-c----c--chHHHHHhhhHHHHHHHhhhccc
Q 014654 170 NMRGSLGSVNQLSVTIGIMLA--YLLGL-F----V--NWRVLAVLGVLPCTLLIPGLFFI 220 (421)
Q Consensus 170 ~~r~~~~~~~~~~~~~G~~~~--~~~~~-~----l--~w~~~f~~~~~~~~~~~~~~~~~ 220 (421)
|+|+....+...+.++|.++. |.+-. - + +|++.+.+.+++.++-++.+..+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888888888888888765 33332 1 1 79999988887777666655444
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.46 Score=41.76 Aligned_cols=72 Identities=14% Similarity=0.242 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhcccCC
Q 014654 96 VGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAP 168 (421)
Q Consensus 96 ~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 168 (421)
+.....+++.+.+.+++|-|.++.++...+.... ..-+-+.+..++-+-...|++.+..+..--+|+++.-.
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 3445566666789999999999998877765432 22244677888889999999999998887777766553
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.15 Score=46.40 Aligned_cols=32 Identities=6% Similarity=-0.103 Sum_probs=21.8
Q ss_pred chhhHHHHHHhhhcchhhhhccchhhhcccCC
Q 014654 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAP 168 (421)
Q Consensus 137 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 168 (421)
.+...++.-.+.+++.|..........++.-+
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~ 147 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLFPS 147 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhcCCH
Confidence 34555666778888888877777766666544
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.17 Score=45.27 Aligned_cols=55 Identities=15% Similarity=0.101 Sum_probs=41.4
Q ss_pred HHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHH
Q 014654 308 NIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (421)
Q Consensus 308 ~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (421)
.++++.|++..+ ..+..-.+.+.+...+.|.+.||+|||+.-+..+++..++++.
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~ 115 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT 115 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 445678998777 4444445677788889999999999999877777777776654
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.15 Score=35.16 Aligned_cols=65 Identities=15% Similarity=-0.026 Sum_probs=53.4
Q ss_pred HHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHH
Q 014654 302 VLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (421)
Q Consensus 302 ~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (421)
..-.+|.+.++.+++..+ +......++.++|.+...++.++.++++.+..+.+...+..+.++..
T Consensus 11 yTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 11 YTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678888888998777 66777789999999999999998888888888888888887777753
|
Note that many members are hypothetical proteins. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.16 Score=47.68 Aligned_cols=107 Identities=16% Similarity=0.177 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchH--HHHHH--HHHHHHHHHHHHHhh---------cchhhHHHHHHhhhcchh
Q 014654 87 FSIFGSLANVGAMVGAIASGQIAEYIGRK--GSLMI--AAVPNIIGWLIISFS---------KDSSFLFMGRLLEGFGVG 153 (421)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~~~~--~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~~~g 153 (421)
.-.....|.+|-.+|..+..+.. .-++| ++++. .=+++.-..++|..- ++-+..++.-++.|+..|
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG 387 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG 387 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence 34567777888888777554321 11222 33322 222333333444332 355677778999999999
Q ss_pred hhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhh
Q 014654 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (421)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 194 (421)
-.......+..+..++++|..+..+...+..+|..+|..++
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888888887664
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.0082 Score=57.78 Aligned_cols=144 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhccccccchH-HHHhhhCCChhhHHHHHHHHHH-HHHHHHHHHHHhhhhhc--hHHHHHHHHHHHHHHH
Q 014654 54 VVALGPIQFGFTCGYSSPTQA-EIISDLKLTISEFSIFGSLANV-GAMVGAIASGQIAEYIG--RKGSLMIAAVPNIIGW 129 (421)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~ 129 (421)
...++.....+...-+....| .++.+|++++++.+++..+..+ +.++|.+++|++..|+. .|+...+..++..++.
T Consensus 309 ~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~ 388 (539)
T PF03137_consen 309 CLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSV 388 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHH
Confidence 334444444444444445555 5778899999999988877666 66788999999999874 4555444444433333
Q ss_pred HHH---Hh--hc-------------------------------------------------chhhHHHHHHhhhcchhhh
Q 014654 130 LII---SF--SK-------------------------------------------------DSSFLFMGRLLEGFGVGVI 155 (421)
Q Consensus 130 ~~~---~~--~~-------------------------------------------------~~~~l~~~r~l~G~~~g~~ 155 (421)
+.. .+ ++ .+..+++..++.-+..+..
T Consensus 389 ~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~ 468 (539)
T PF03137_consen 389 ILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMS 468 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhc
Confidence 220 00 00 1223334444444444555
Q ss_pred hccchhhhcccCCCCcchhHhhHHHHHH-HHHHHHHHHhhccc
Q 014654 156 SYTVPVYIAEIAPQNMRGSLGSVNQLSV-TIGIMLAYLLGLFV 197 (421)
Q Consensus 156 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~-~~G~~~~~~~~~~l 197 (421)
.......+-+.+++++|+.++|+..... .+|.+-||++-+.+
T Consensus 469 ~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~i 511 (539)
T PF03137_consen 469 QVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAI 511 (539)
T ss_dssp -------------------------------------------
T ss_pred ccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHH
Confidence 5555566667788888888888865443 44666677665543
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.44 Score=43.83 Aligned_cols=95 Identities=12% Similarity=0.097 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHH--HHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhc
Q 014654 87 FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA--AVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIA 164 (421)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 164 (421)
-|.+-++..+..+++.+..|++..++.+-.-+.++ .++.+...++++..+|.|...++-++.+.......+.+..-++
T Consensus 287 NG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA 366 (412)
T PF01770_consen 287 NGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIA 366 (412)
T ss_pred chHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888899999999999999998888775444433 4455566667788899999999998888888888888888888
Q ss_pred ccCCCCcchhHhhHHHH
Q 014654 165 EIAPQNMRGSLGSVNQL 181 (421)
Q Consensus 165 ~~~~~~~r~~~~~~~~~ 181 (421)
.....+.-+...|+...
T Consensus 367 ~~l~~e~yaLVFGiNtf 383 (412)
T PF01770_consen 367 KNLSEERYALVFGINTF 383 (412)
T ss_pred HhccccceeeeeeeHHH
Confidence 88887777887777543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.39 Score=37.74 Aligned_cols=84 Identities=11% Similarity=-0.064 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHh
Q 014654 320 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 399 (421)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (421)
....+......+..++++.+.+++|.|+.++++.+...+-..... .+ ..+..+.+..+.+++.+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~----~~------------~~~~l~~~s~l~G~~~a 104 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF----YP------------NSYTLYPASALLGFGAA 104 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----hh------------hHHHHHHHHHHHhhhhH
Confidence 455556666778888889999999999999888776654333221 11 12344444445555555
Q ss_pred cccccchhhhccccCCCCCCC
Q 014654 400 LGVGAIPWVIMSEASELGKPN 420 (421)
Q Consensus 400 ~~~~~~~~~~~~e~~p~~~rg 420 (421)
.-|.. .-.++.+...++.|+
T Consensus 105 ~lW~a-qg~ylt~~s~~~~~~ 124 (156)
T PF05978_consen 105 LLWTA-QGTYLTSYSTEETIG 124 (156)
T ss_pred HhhHh-hhHHHHHcCCHHHHh
Confidence 44433 235666766666654
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.18 Score=47.21 Aligned_cols=88 Identities=14% Similarity=0.092 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHH
Q 014654 320 VATFGLGVVQVVATGVNTWLMDKAGR-RLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 398 (421)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (421)
+......++.+++.++.|+...|.+. |+.++.+.+++.++.++.....+.++. ..++.+++-++ .|+
T Consensus 75 ~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~----------~~y~mL~~R~l--~Gv 142 (488)
T KOG2325|consen 75 LVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNG----------VKYLMLVARIL--TGV 142 (488)
T ss_pred HHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccc----------hHHHHHHHHHH--cCc
Confidence 66666789999999999999999886 888899999999999988655444331 12333344333 344
Q ss_pred hcccccchhhhccccCCCCCC
Q 014654 399 SLGVGAIPWVIMSEASELGKP 419 (421)
Q Consensus 399 ~~~~~~~~~~~~~e~~p~~~r 419 (421)
+.+...+.-.|+++..-.+.|
T Consensus 143 g~~n~a~lR~Y~a~~s~~~dR 163 (488)
T KOG2325|consen 143 GVGNFAVLRAYIADASTVEDR 163 (488)
T ss_pred CcccHHHHHHHHHhccCccch
Confidence 444445566777775444444
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.022 Score=50.79 Aligned_cols=19 Identities=5% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014654 321 ATFGLGVVQVVATGVNTWL 339 (421)
Q Consensus 321 ~~~~~~~~~~~~~~~~g~l 339 (421)
....+.++..+|+.+.++.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~ 205 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWP 205 (309)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHhcchhccee
Confidence 4556788999999988874
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.081 Score=45.82 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=83.9
Q ss_pred hhhCCCh-hhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHH---HHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchh
Q 014654 78 SDLKLTI-SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS---LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVG 153 (421)
Q Consensus 78 ~~~~~s~-~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 153 (421)
+.+..+. +|+-|....|.+|-.+..--.-..- ...-+. +-.-..++.+...+..+.++++..++.-+..|+-.|
T Consensus 280 ~g~sls~~sqYRwyqvlYQlGVFiSRSS~~~~~--~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGG 357 (409)
T KOG3880|consen 280 HGFSLSKDSQYRWYQVLYQLGVFISRSSINLFT--MPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGG 357 (409)
T ss_pred cCCccchhhcchhhheeeeeeEEEEeccceEEe--chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCc
Confidence 4444443 4588999998887554322111110 111111 222344455566667788999999999999999999
Q ss_pred hhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc
Q 014654 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (421)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 197 (421)
..+.....-+.+-.++++|-.+++....+-++|..++.+++-.+
T Consensus 358 asYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 358 ASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred hHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 99998888888888889999999999999999999998887655
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.058 Score=48.16 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHH--HHHHHHHHHHHHH----------hhcchhhHHHHHHhhhcchhhh
Q 014654 89 IFGSLANVGAMVGAIASGQIAEY-IGRKGSLMI--AAVPNIIGWLIIS----------FSKDSSFLFMGRLLEGFGVGVI 155 (421)
Q Consensus 89 ~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~--~~~~~~~~~~~~~----------~~~~~~~l~~~r~l~G~~~g~~ 155 (421)
.....|.++-.+|..+.++.--+ ..+|++... .=+++.-..++|. +-++-+..++.-++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 34667888888888877764211 124444433 1222222223331 2245567778889999999999
Q ss_pred hccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhc
Q 014654 156 SYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195 (421)
Q Consensus 156 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 195 (421)
......+..+..++++|..+..+.......|..+|..++-
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~ 305 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF 305 (309)
T ss_dssp -HHHH-----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888888888888888776653
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.63 E-value=1.5 Score=40.16 Aligned_cols=107 Identities=14% Similarity=0.174 Sum_probs=72.9
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhhhhhchHHHHHHHHH-HHHHHHHH-HH------hhcchhhHHHHHHhhhcchhhhhc
Q 014654 87 FSIFGSL-ANVGAMVGAIASGQIAEYIGRKGSLMIAAV-PNIIGWLI-IS------FSKDSSFLFMGRLLEGFGVGVISY 157 (421)
Q Consensus 87 ~~~~~s~-~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~-~~~~~~~~-~~------~~~~~~~l~~~r~l~G~~~g~~~~ 157 (421)
.-.+..+ |.+.-.+|.+.+.++-+. +||+..+.... ...+-.+. |- +-.+-+++++.-.+.|+..|-...
T Consensus 284 ~~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts 362 (406)
T KOG1479|consen 284 ALLLVFLSFNVFDLIGSILAALLTWP-DPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS 362 (406)
T ss_pred HHHHHHHHhHHHHHhhhhhhhcccCC-CCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh
Confidence 3445555 888888887777776554 34443332221 11222222 21 234667888889999999999999
Q ss_pred cchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhh
Q 014654 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (421)
Q Consensus 158 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 194 (421)
....+..+..+++++-.+..+.......|...|..++
T Consensus 363 l~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 363 LIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred heehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999988888888777777777777776553
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=89.89 E-value=2.6 Score=41.91 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=58.7
Q ss_pred HHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHhhc-cCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHH
Q 014654 308 NIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDK-AGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILG 384 (421)
Q Consensus 308 ~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (421)
++.+..|+++.. .....+....-+..+++|+++|+ +|+++.+..+.++..++..++.+...... ... ...
T Consensus 13 Yl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~-----~~~--~~~ 85 (654)
T TIGR00926 13 YFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSS-----GHP--LHD 85 (654)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccc-----ccc--hHH
Confidence 334456776655 33333344445677788899887 69999999999988888877765321100 000 111
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhccccCCCCC
Q 014654 385 ILSLVGLVTVVISFSLGVGAIPWVIMSEASELGK 418 (421)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 418 (421)
...++++.+...+-+ +.-|...+...|.++.+.
T Consensus 86 ~~~l~gLaLia~G~G-giKp~vsaf~gdqf~~~~ 118 (654)
T TIGR00926 86 LLDLLGLALIALGTG-GIKPCVSAFGGDQFEERQ 118 (654)
T ss_pred HHHHHHHHHHHhhcc-ccccCchhhhHhhcCccc
Confidence 223344444333332 335666677778777543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=83.24 E-value=7.1 Score=34.02 Aligned_cols=55 Identities=16% Similarity=0.092 Sum_probs=36.2
Q ss_pred hHHHHHhhcCCCc----hhHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHH
Q 014654 305 YSSNIFANAGISS----SNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (421)
Q Consensus 305 ~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 359 (421)
..+.+..+.+.+. .........+...++.++.|.+.||.|||+.+..+.....++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 82 (338)
T COG0477 24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLG 82 (338)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHH
Confidence 3444455544443 235566666777777799999999999997777666543333
|
|
| >COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.64 E-value=33 Score=30.18 Aligned_cols=149 Identities=18% Similarity=0.248 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh---hchHHHHHHHH
Q 014654 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY---IGRKGSLMIAA 122 (421)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr---~Grr~~~~~~~ 122 (421)
.++....+.+.++++..-+..++....+..+.+..|...+..++..+..... +..+-.++ ||.||.=+++.
T Consensus 21 ~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~------~a~r~~~~~~TfGy~R~eiLaa 94 (296)
T COG1230 21 ERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIK------LARRPATKRFTFGYKRLEILAA 94 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHH------HhcCCCCCCCCccHhHHHHHHH
Confidence 3444444555555555555566666677778888887777777766654332 33333333 78777666555
Q ss_pred HHHHHHHHHHHhh---------------cchhhHHHHHHhhhcchhhhhccchhhhcccC--CCCcchhHhhH-HHHHHH
Q 014654 123 VPNIIGWLIISFS---------------KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA--PQNMRGSLGSV-NQLSVT 184 (421)
Q Consensus 123 ~~~~~~~~~~~~~---------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~--~~~~r~~~~~~-~~~~~~ 184 (421)
+..++..+..++. ++..++. -.+.|+.... .... .+.+-- ..+.|+...-. .-...+
T Consensus 95 ~~nav~Li~~s~~I~~EAi~R~~~P~~i~~~~ml~--va~~GL~vN~--~~a~-ll~~~~~~~lN~r~a~LHvl~D~Lgs 169 (296)
T COG1230 95 FLNALLLIVVSLLILWEAIQRLLAPPPIHYSGMLV--VAIIGLVVNL--VSAL-LLHKGHEENLNMRGAYLHVLGDALGS 169 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccchHH--HHHHHHHHHH--HHHH-HhhCCCcccchHHHHHHHHHHHHHHH
Confidence 5544433333221 1222222 2233332211 1111 122220 12334443333 344567
Q ss_pred HHHHHHHHhhcccchHHHHHh
Q 014654 185 IGIMLAYLLGLFVNWRVLAVL 205 (421)
Q Consensus 185 ~G~~~~~~~~~~l~w~~~f~~ 205 (421)
+|.+++.++..+.+|.|.=-+
T Consensus 170 v~vIia~i~i~~~~w~~~Dpi 190 (296)
T COG1230 170 VGVIIAAIVIRFTGWSWLDPI 190 (296)
T ss_pred HHHHHHHHHHHHhCCCccchH
Confidence 777788777777788884333
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.14 E-value=1.1 Score=41.42 Aligned_cols=77 Identities=6% Similarity=-0.062 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhhc
Q 014654 88 SIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIA 164 (421)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 164 (421)
.|-..++.+...+.+...-++.+|+|-|+.+..+...+.++.-+.+..++.+.....|...|+-.+....+-...++
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~ 411 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALA 411 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHH
Confidence 45566777788899999999999999877777777778888888888888888888888888655555444444443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=80.19 E-value=15 Score=31.50 Aligned_cols=101 Identities=18% Similarity=0.206 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHH----HHHHHHHHHHHHHHh-h----cchhhHHHHHHhhhcchhhhhc
Q 014654 88 SIFGSLANVGAMVGAIASGQIAEY-IGRKGSLM----IAAVPNIIGWLIISF-S----KDSSFLFMGRLLEGFGVGVISY 157 (421)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~----~~~~~~~~~~~~~~~-~----~~~~~l~~~r~l~G~~~g~~~~ 157 (421)
....-++..|..+|....|++... +-||+.+. .+.++..++.+..+. . .++..+++.-++.|++.=+..+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 444555666666777777777663 44555443 334444444444211 1 1356677888888887766665
Q ss_pred cchhhhcccCCCCcchhHhhHHHHHHHHHHHH
Q 014654 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIML 189 (421)
Q Consensus 158 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 189 (421)
+...+ .+-++..++-+..-.++..+++|.++
T Consensus 224 ViL~l-PhEyK~~~pk~ig~~Fg~iWGfGY~~ 254 (267)
T PF07672_consen 224 VILNL-PHEYKGYNPKKIGIQFGLIWGFGYIF 254 (267)
T ss_pred HHhcC-hhhhcCCCcceehhHHHHHHHHHHHH
Confidence 54432 22233233333344455556666543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 421 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 3e-28 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 421 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.96 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.95 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.89 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.89 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.53 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.41 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.4 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.35 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.32 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.98 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.8 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=314.21 Aligned_cols=361 Identities=29% Similarity=0.448 Sum_probs=287.5
Q ss_pred CchhHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCC--------ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchH
Q 014654 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKL--------TISEFSIFGSLANVGAMVGAIASGQIAEYIGRK 115 (421)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr 115 (421)
+.+..+.+.++++++.+++|+|.+.++..+|.++++++. +.++.|++.+++.+|..+|++++|+++||+|||
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk 85 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 345677777888899999999999999999999888743 234678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH------------------hhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhh
Q 014654 116 GSLMIAAVPNIIGWLIIS------------------FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177 (421)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 177 (421)
+++.++.+++.+++++++ +++|+++++++|+++|++.|+..+....++.|+.|+++|++..+
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~ 165 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence 999999999999999998 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccc------------chHHHHHhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhC
Q 014654 178 VNQLSVTIGIMLAYLLGLFV------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRG 245 (421)
Q Consensus 178 ~~~~~~~~G~~~~~~~~~~l------------~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 245 (421)
+.+.+..+|..+++.++... .||+.+.+..+..++..+..+++||+|+|+..+++.+++.+.+++...
T Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~ 245 (491)
T 4gc0_A 166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMG 245 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcC
Confidence 99999999999888776432 588888888888888888889999999999999999999988887654
Q ss_pred CCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHH
Q 014654 246 FDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATF 323 (421)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~ 323 (421)
.+...++..+..+.. + +.++....... ...+...+......+.++.+.+.+.+|.+.+.+..+.+... ....
T Consensus 246 ~~~~~~~~~~~~~~~-~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (491)
T 4gc0_A 246 NTLATQAVQEIKHSL-D--HGRKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTI 319 (491)
T ss_dssp HHHHHHHHHHHHHHH-H--HHHHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH-H--hhhhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHH
Confidence 332111111111110 0 01111111111 12334555666666777778888899999999888876655 5566
Q ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccc
Q 014654 324 GLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVG 403 (421)
Q Consensus 324 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (421)
..++..+++.++++++.||+|||+.++.+...+.++++.++........ ....+....++..+++.++.
T Consensus 320 ~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 388 (491)
T 4gc0_A 320 IVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-----------GIVALLSMLFYVAAFAMSWG 388 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc-----------hHHHHHHHHHHHHHHHhHHH
Confidence 6788899999999999999999999999998888888777765543322 23444555666778888889
Q ss_pred cchhhhccccCCCCCCCC
Q 014654 404 AIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 404 ~~~~~~~~e~~p~~~rg~ 421 (421)
|+.+++.+|++|++.|++
T Consensus 389 ~~~~~~~~E~fPt~~R~~ 406 (491)
T 4gc0_A 389 PVCWVLLSEIFPNAIRGK 406 (491)
T ss_dssp HHHHHHHHHSSCTTTHHH
T ss_pred HHHHHHHHHhCCHhHHHH
Confidence 999999999999999974
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=258.31 Aligned_cols=315 Identities=12% Similarity=0.091 Sum_probs=239.0
Q ss_pred HHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Q 014654 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (421)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 129 (421)
.....+++..+..+++.+...+..|.+.+++|++.++.|++.+++.+++.+++++.|+++||+|||++++++.++.+++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 105 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 34445556667778888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH---HhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhcccc--------
Q 014654 130 LII---SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN-------- 198 (421)
Q Consensus 130 ~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~-------- 198 (421)
+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 185 (438)
T 3o7q_A 106 ALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS 185 (438)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCC
T ss_pred HHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999 889999999999999999999999999999999999999999999999999999999999987762
Q ss_pred ----------------------hHHHHHhhhHHHHHHHhhhc--cccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHH
Q 014654 199 ----------------------WRVLAVLGVLPCTLLIPGLF--FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 254 (421)
Q Consensus 199 ----------------------w~~~f~~~~~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (421)
||+.|++.+...++..+..+ ..||+++. ++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~----------------------- 239 (438)
T 3o7q_A 186 QDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NH----------------------- 239 (438)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CC-----------------------
T ss_pred ccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cc-----------------------
Confidence 99999876665555444332 34555320 00
Q ss_pred HHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHH-Hhhc-CCCchh--HHHHHHHHHHH
Q 014654 255 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNI-FANA-GISSSN--VATFGLGVVQV 330 (421)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~--~~~~~~~~~~~ 330 (421)
.++++++.+..++++++++..+...+...+... .......+.+.+ .++. |.+... .......++.+
T Consensus 240 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 309 (438)
T 3o7q_A 240 ------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFF 309 (438)
T ss_dssp ------CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred ------ccccccchhhhHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHH
Confidence 001122334556777777766655544433333 234455666666 6665 887665 56666788899
Q ss_pred HHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhc
Q 014654 331 VATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIM 410 (421)
Q Consensus 331 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (421)
++.++.+++.||++||+.+..+.++..++++++... + . ...+...++.+++++ ...|..+.+.
T Consensus 310 ~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---~------------~-~~~~~~~~~~g~~~~-~~~~~~~~~~ 372 (438)
T 3o7q_A 310 IGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---G------------G-HVGLIALTLCSAFMS-IQYPTIFSLG 372 (438)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---C------------H-HHHHHHHHHHHHHHT-THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc---C------------C-cHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 999999999999999999988887777666555431 1 0 112223333344443 3356778888
Q ss_pred cccCCCC
Q 014654 411 SEASELG 417 (421)
Q Consensus 411 ~e~~p~~ 417 (421)
.|.+|++
T Consensus 373 ~~~~~~~ 379 (438)
T 3o7q_A 373 IKNLGQD 379 (438)
T ss_dssp HSSCGGG
T ss_pred Hhhcccc
Confidence 8888876
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=261.89 Aligned_cols=342 Identities=12% Similarity=0.078 Sum_probs=242.8
Q ss_pred hHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q 014654 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (421)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 126 (421)
.++.......++.+..+++.....+.+|.+.+++ .+..+.|++.+++.++..+++++.|+++||+|||++++++.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 3455566667777888888888899999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh----hcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c
Q 014654 127 IGWLIISF----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N 198 (421)
Q Consensus 127 ~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~ 198 (421)
++.+++++ +++++.++++|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..++|.+++.+ +
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 183 (451)
T 1pw4_A 104 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 183 (451)
T ss_dssp HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 999999999999999999999999999999999999999999999999999999999998764 7
Q ss_pred -hHHHHHhhhHHHHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHh
Q 014654 199 -WRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELK 276 (421)
Q Consensus 199 -w~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (421)
||+.|++.++..++..+ ..+++||+|+....+++.+.. .+.+.+ .++..+++....+...++.+
T Consensus 184 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~~~~~~~ 249 (451)
T 1pw4_A 184 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK-----------NDYPDD---YNEKAEQELTAKQIFMQYVL 249 (451)
T ss_dssp CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC-----------CC----------------CCTHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc-----------cccccc---chhhhhcccccccchHHHHH
Confidence 99999998877666544 456678876532111111000 000000 00000011111122245555
Q ss_pred hccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhhcc--CChHHHHH
Q 014654 277 RKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKA--GRRLLLLI 351 (421)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~ 351 (421)
+++..+...+...+.. ........+.|.++++ .|.+..+ .......++.+++.++.+++.||+ +||+.+..
T Consensus 250 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~ 325 (451)
T 1pw4_A 250 PNKLLWYIAIANVFVY----LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 325 (451)
T ss_dssp SCHHHHHHHHHHHHHH----HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 5554443333333222 2345566677877776 6887665 666777889999999999999999 99988877
Q ss_pred hhHHHH-HHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 352 SSSGMA-ASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 352 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
+..+.. ++++++... + .. ..+......++.+.+.+ +..+....+..|.+|++.||+
T Consensus 326 ~~~~~~~~~~~~~~~~---~-----~~-----~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~ 382 (451)
T 1pw4_A 326 FFMTLVTIATIVYWMN---P-----AG-----NPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGT 382 (451)
T ss_dssp HHHHHHHHHHHHTTSC---C-----TT-----CHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHHHHHHHHHHHh---c-----cc-----CHHHHHHHHHHHHHHHh-chHHHHHHHHHHHhchhhhhh
Confidence 666555 443333211 0 00 11222233333333332 234556789999999987763
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-30 Score=238.67 Aligned_cols=313 Identities=13% Similarity=0.092 Sum_probs=225.5
Q ss_pred HHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH
Q 014654 54 VVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133 (421)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 133 (421)
..++..+..+++.+...+.+|.+.+++|.+.++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 44555667777888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHH
Q 014654 134 FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLP 209 (421)
Q Consensus 134 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~ 209 (421)
++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+ +||+.|++.++.
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998876 899999988877
Q ss_pred HHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHH
Q 014654 210 CTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (421)
Q Consensus 210 ~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (421)
.++..+ ..+++||+++.. + ++++.+..++++++++..+...+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~---~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPVD---A--------------------------------PRTRLLTSYKTLFGNSGFNCYLLML 208 (375)
T ss_dssp HHHHHCCCCCSSCCCSTTT---C--------------------------------CCCCTTTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccCCCC---c--------------------------------ccccHHHHHHHHhcCcchHHHHHHH
Confidence 777666 556678875410 0 0011222344555555544444333
Q ss_pred HHHHHHhhhchHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHH-HHHHHHHHH
Q 014654 289 GLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSG-MAASFFLVS 364 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~ 364 (421)
.+... .......+.|.+.++ .|.++.. .......++.+++.++.+++.||.+++ +..+... ...+...+.
T Consensus 209 ~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~ 282 (375)
T 2gfp_A 209 IGGLA----GIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWI 282 (375)
T ss_dssp HHHHH----HHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 33322 233444455555444 5665444 556666788889999999999998772 2222222 222222111
Q ss_pred HHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCC
Q 014654 365 VAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPN 420 (421)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg 420 (421)
...... ...+.......+.+++++. ..+....+..|..| +.||
T Consensus 283 ~~~~~~-----------~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g 325 (375)
T 2gfp_A 283 PDWFGV-----------MNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAG 325 (375)
T ss_dssp HHHHHH-----------HHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHH
T ss_pred Hhhhcc-----------ccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccc
Confidence 111000 1122333344444444443 36677888889888 6554
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=219.62 Aligned_cols=331 Identities=14% Similarity=0.086 Sum_probs=202.5
Q ss_pred hCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhcc
Q 014654 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 158 (421)
Q Consensus 80 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 158 (421)
+|.+..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.++++++++++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred chhhhcccCCCCc--chhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhccc-cCC----hHHH
Q 014654 159 VPVYIAEIAPQNM--RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFI-PES----PRWL 227 (421)
Q Consensus 159 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~~~-~e~----~~~~ 227 (421)
..+++.|++|+++ |+.+.++++.+..+|..++|.+++.+ +||+.|++.++..++..+..++. ++. .+..
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRP 208 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCC
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCC
Confidence 9999999999988 77788889999999999999988776 89999999776666555443322 211 0000
Q ss_pred HHcCCHHHHHHHHHH---------------HhCCCcchHHHHHHHHH--------HHhhcchhhhHHHHHHhhccchhHH
Q 014654 228 AKMGMTEDFESSLQV---------------LRGFDTDISIEVNEIKR--------SVASSSRRTAIRFAELKRKRYWFPL 284 (421)
Q Consensus 228 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (421)
.++.+.++.++..+. ......+.+........ ......++......+..+.......
T Consensus 209 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (491)
T 4aps_A 209 TDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPL 288 (491)
T ss_dssp SCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHH
T ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 011122222222221 00011010000000000 0000000000000011111111122
Q ss_pred HHHHHHHHHHhhhchHHHHHhHHHHHhh-cCCC--chhHHHHHHHHHHHHHHHHHHHHhhccCChHHHH-----HhhHHH
Q 014654 285 MIGIGLLVLQQLSGINGVLFYSSNIFAN-AGIS--SSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLL-----ISSSGM 356 (421)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~~~~~~ 356 (421)
.+...+.... +.....+.+.+.++ .+.+ ..........++.+++.++.+++.||++||+... .+..+.
T Consensus 289 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~ 364 (491)
T 4aps_A 289 FIAAVLFWAI----EEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFA 364 (491)
T ss_dssp HHHHHHHHHH----HGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 2222222222 22223334444443 3443 2335566677888888999999999999986544 566666
Q ss_pred HHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 357 AASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
+++++++......... +.+. ..+......++.+.+.+ ...+..+.+..|.+|++.||+
T Consensus 365 ~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p~~~~g~ 422 (491)
T 4aps_A 365 GLSFLLMAIPGALYGT-SGKV-----SPLWLVGSWALVILGEM-LISPVGLSVTTKLAPKAFNSQ 422 (491)
T ss_dssp HHHHTTTHHHHHHCCC-CTTC-----CTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHTTTTCSSS
T ss_pred HHHHHHHHHHHHhcCC-CCCc-----cHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHH
Confidence 6666555543322110 0000 11222333333344433 336777889999999999985
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-24 Score=201.33 Aligned_cols=309 Identities=12% Similarity=0.030 Sum_probs=177.7
Q ss_pred cccccchHH-HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH---HHHHhhcch-hhH
Q 014654 67 GYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW---LIISFSKDS-SFL 141 (421)
Q Consensus 67 ~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~-~~l 141 (421)
+...+.+|. +++++|.+..+.|++.+.+.+++.++++++|+++||+|||++++++..+.+++. +...+++.. ..+
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI 103 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666 556799999999999999999999999999999999999999998887765532 211222221 123
Q ss_pred HHHHHhhhcchhhhhccchhhhcccCCC--CcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhhHHHHHHHhh
Q 014654 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQ--NMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPG 216 (421)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~w~~~f~~~~~~~~~~~~~ 216 (421)
+..+.+.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++.+ +||+.|++.++..++..+.
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~ 183 (417)
T 2cfq_A 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL 183 (417)
T ss_dssp CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 4556676666665555445555555443 3456666666666677778888777665 7999999877665555554
Q ss_pred hccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhh
Q 014654 217 LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQL 296 (421)
Q Consensus 217 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (421)
.++.+|+++. +.++++. + .+++++.....++++++++..+...+........
T Consensus 184 ~~~~~~~~~~---~~~~~~~------------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 235 (417)
T 2cfq_A 184 LFFAKTDAPS---SATVANA------------V-----------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT-- 235 (417)
T ss_dssp SCSSCCCCSC---SSCSSSS------------S-----------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH--
T ss_pred HHHcCccccc---ccccccc------------c-----------ccccccccHHHHHHHhcCCchhhHHHHHHHHHHH--
Confidence 5555443310 0000000 0 0000111122345566665544433322222111
Q ss_pred hchHHHHHhHHHHHhhc-CCC---chh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhh
Q 014654 297 SGINGVLFYSSNIFANA-GIS---SSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLE 370 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~~~-g~~---~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (421)
+.....+.|.++.+. +.. ... .......++.+++.++.++++||+|||+.+..+..+.+++.+.+... +
T Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~---~ 310 (417)
T 2cfq_A 236 --YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---T 310 (417)
T ss_dssp --HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC---C
T ss_pred --HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---c
Confidence 122222344444332 211 111 33445566778899999999999999998887777666654443210 0
Q ss_pred ccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 371 GFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
+ .+..++...+...++. ...+..+.+++|.+|++.||+
T Consensus 311 ~------------~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~ 348 (417)
T 2cfq_A 311 S------------ALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSAT 348 (417)
T ss_dssp S------------HHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHH
T ss_pred c------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHH
Confidence 0 1111222222222222 112334678999999988763
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=194.57 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=130.8
Q ss_pred HHHHhhhC------CChhhHHHHHHHHHHHHHHHHHHHHHhhhhh-chHHHHHHHHHHHHHHHHHHHhhc-chhhHHHHH
Q 014654 74 AEIISDLK------LTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGR 145 (421)
Q Consensus 74 ~~i~~~~~------~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r 145 (421)
+.+.+++| .+..+.+++.+++.++..+++++.|+++||+ |||+++..+.++.+++.+++++++ +++.++++|
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL 116 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34678899 9999999999999999999999999999999 999999999999999999999999 999999999
Q ss_pred HhhhcchhhhhccchhhhcccCCCCcchhHhhH---HHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhh
Q 014654 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV---NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (421)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~ 217 (421)
++.|++.+...+...+++.|++|+++|+++.+. .+.+..+|..++|.+++.+ +||+.|++.++..++..+..
T Consensus 117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999877666 8899999999999998766 89999998877766655543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-14 Score=132.89 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=128.3
Q ss_pred ccccchHHHHhh-hCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhh--chHHHHHHHHHHHH-HHHHHHHhh--cchhhH
Q 014654 68 YSSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSLMIAAVPNI-IGWLIISFS--KDSSFL 141 (421)
Q Consensus 68 ~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~~~l 141 (421)
......|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+.++.. ++.++..+. .+.+.+
T Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (451)
T 1pw4_A 270 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD 349 (451)
T ss_dssp HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 344556666666 899999999999999999999999999999999 99999888877766 666666665 367777
Q ss_pred HHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHH-HHHHHHHhhccc----chHHHHHhhhHHHHHHHhh
Q 014654 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (421)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~ 216 (421)
.+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+ +|+..|++.++..++..+.
T Consensus 350 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 429 (451)
T 1pw4_A 350 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 429 (451)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 88889999998888888899999999999999999999999999 999999888766 8999998887777766655
Q ss_pred hccc
Q 014654 217 LFFI 220 (421)
Q Consensus 217 ~~~~ 220 (421)
.+++
T Consensus 430 ~~~~ 433 (451)
T 1pw4_A 430 LIVV 433 (451)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5e-13 Score=123.74 Aligned_cols=141 Identities=13% Similarity=0.070 Sum_probs=115.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhh
Q 014654 84 ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYI 163 (421)
Q Consensus 84 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 163 (421)
..+.++..++..++..++.++.|+++||+|||+++..+.++.+++.+..++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568888888889999999999999999999999999888888877777788888888888888888777777778899
Q ss_pred cccCCCCcchhHhhH-HHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhh-hccccCCh
Q 014654 164 AEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESP 224 (421)
Q Consensus 164 ~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~-~~~~~e~~ 224 (421)
.|.+|++.|+.+.++ ++....+|..++|.+++.+ +++..|.+.++..++..+. +...||.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999888 4777888999998888765 6778888877766666554 44456554
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.4e-12 Score=118.19 Aligned_cols=147 Identities=13% Similarity=-0.047 Sum_probs=118.6
Q ss_pred cchHHH-H-hhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhh
Q 014654 71 PTQAEI-I-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (421)
Q Consensus 71 ~~~~~i-~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 148 (421)
...|.+ . +.+|.+..+.++..+.+.++..++.++.|+++||+|||+++..+.++..++.++..+.++.+.++.. ++.
T Consensus 279 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 357 (438)
T 3o7q_A 279 SYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLC 357 (438)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHH
T ss_pred HHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHH
Confidence 344544 4 4459999999999999999999999999999999999999999999999999888888877655444 888
Q ss_pred hcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c-hHHHHHhhhHHHHHHHhhhccc
Q 014654 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCTLLIPGLFFI 220 (421)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~-w~~~f~~~~~~~~~~~~~~~~~ 220 (421)
|++.+...+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+ + ++..|++.++..++..+..+..
T Consensus 358 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 358 SAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999989999865 888888766 5568888888888776 6 8888877655555444443333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=123.66 Aligned_cols=157 Identities=13% Similarity=0.040 Sum_probs=111.1
Q ss_pred ccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh---c-chhhHHH
Q 014654 68 YSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---K-DSSFLFM 143 (421)
Q Consensus 68 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---~-~~~~l~~ 143 (421)
......+.+.++.+.+..+.........+...++.++.+++.||+|||+.++.+.....++.+..+.. . ..+..++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 374 (491)
T 4gc0_A 295 VVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 374 (491)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH
Confidence 33445667888888888888888888889999999999999999999999999888887777665432 1 1122222
Q ss_pred HHHh-hhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----------chHHHHHhhhHHHHH
Q 014654 144 GRLL-EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----------NWRVLAVLGVLPCTL 212 (421)
Q Consensus 144 ~r~l-~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----------~w~~~f~~~~~~~~~ 212 (421)
.-++ .+.......+....+.+|.+|.+.|+.+.++......+|..+++.+...+ ++.+.|++.+.++++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~ 454 (491)
T 4gc0_A 375 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL 454 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 2222 22222233456678999999999999999999888888888776554322 344566666666665
Q ss_pred HHh-hhccccCCh
Q 014654 213 LIP-GLFFIPESP 224 (421)
Q Consensus 213 ~~~-~~~~~~e~~ 224 (421)
..+ .++++||+.
T Consensus 455 ~~i~~~~~~PETk 467 (491)
T 4gc0_A 455 AALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHCCCCT
T ss_pred HHHHHHheecCCC
Confidence 554 567789984
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.7e-12 Score=120.61 Aligned_cols=149 Identities=16% Similarity=0.039 Sum_probs=117.7
Q ss_pred ccchHHHH-hhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHH-----HHHHHHHHHHHHHHhhc-------
Q 014654 70 SPTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM-----IAAVPNIIGWLIISFSK------- 136 (421)
Q Consensus 70 ~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-----~~~~~~~~~~~~~~~~~------- 136 (421)
....+.+. +.++.+..+.++..+...++..++.++.|++.||+|||+... .+.++.+++.++..+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG 382 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445444 446777677888889999999999999999999999986654 67777777776666543
Q ss_pred --chhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhhHHHH
Q 014654 137 --DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCT 211 (421)
Q Consensus 137 --~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~w~~~f~~~~~~~~ 211 (421)
+.+.+.+.-++.|++.+...+...+++.|.+|+++|+.+.++.+....+|..+++.+.+.+ ++...|.+.+...+
T Consensus 383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (491)
T 4aps_A 383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSV 462 (491)
T ss_dssp TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6777888889999999999999999999999999999999999999999999999998877 56667777666665
Q ss_pred HHHhhhc
Q 014654 212 LLIPGLF 218 (421)
Q Consensus 212 ~~~~~~~ 218 (421)
+..+..+
T Consensus 463 ~~~~~~~ 469 (491)
T 4aps_A 463 VLGIVLV 469 (491)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544333
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-10 Score=105.99 Aligned_cols=126 Identities=19% Similarity=0.117 Sum_probs=99.0
Q ss_pred HhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHH-HHHHHH--HHHh--hcchhhHHHHHHhhhcc
Q 014654 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP-NIIGWL--IISF--SKDSSFLFMGRLLEGFG 151 (421)
Q Consensus 77 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~-~~~~~~--~~~~--~~~~~~l~~~r~l~G~~ 151 (421)
++++|.++.+.+++.+...++..++.++.+++.||+|++. ..+..+ ...+.. .... .++.+.+++..++.|++
T Consensus 227 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 304 (375)
T 2gfp_A 227 GAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFG 304 (375)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH
Confidence 4458889999999999999999999999999999999833 223222 222222 2222 24677777888999999
Q ss_pred hhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHh
Q 014654 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVL 205 (421)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~ 205 (421)
.+...+...+++.|.+| ++|+++.++.+....+|..++|.+.+.+ +|+..+++
T Consensus 305 ~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 305 AGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 99999999999999998 8999999999999999999998888776 45555554
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.1e-09 Score=99.29 Aligned_cols=149 Identities=17% Similarity=0.121 Sum_probs=102.2
Q ss_pred cchHHHHhhhCCCh-hhHHHHHHHHHHHHHHHHHHHHHhh----hhhch----HHHHHHHHHHHHHHHHHHHhh------
Q 014654 71 PTQAEIISDLKLTI-SEFSIFGSLANVGAMVGAIASGQIA----EYIGR----KGSLMIAAVPNIIGWLIISFS------ 135 (421)
Q Consensus 71 ~~~~~i~~~~~~s~-~~~~~~~s~~~~~~~~~~~~~g~l~----dr~Gr----r~~~~~~~~~~~~~~~~~~~~------ 135 (421)
+..+....+.+.+. ...+++.+...++..++.++.+++. ||.|+ ++.+..+.++.+++.++.++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 399 (524)
T 2xut_A 320 STWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDG 399 (524)
T ss_dssp THHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTT
T ss_pred hhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33443334444322 2456666666666677777776664 55543 356677888888877776664
Q ss_pred ---cchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc------ch-------
Q 014654 136 ---KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NW------- 199 (421)
Q Consensus 136 ---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l------~w------- 199 (421)
.+.+.+++..++.|++.+...+...+++.|..|+++|++++++.+....+|..+++.+.+.+ +|
T Consensus 400 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~ 479 (524)
T 2xut_A 400 GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMS 479 (524)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 36677888899999999999999999999999999999999999999999999999988766 24
Q ss_pred --HHHHHhhhHHHHHHHhhhcc
Q 014654 200 --RVLAVLGVLPCTLLIPGLFF 219 (421)
Q Consensus 200 --~~~f~~~~~~~~~~~~~~~~ 219 (421)
+..|++.+...++..+..++
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~ 501 (524)
T 2xut_A 480 VTAFQMFFFAGFAILAAIVFAL 501 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccccHHHHHHHHHHHHHHHHHH
Confidence 33366555555555544433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 421 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-07 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 50.4 bits (119), Expect = 2e-07
Identities = 41/341 (12%), Positives = 94/341 (27%), Gaps = 24/341 (7%)
Query: 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRK----GSLMIAAVPNIIGWLI 131
+ + + + S ++ G +++ + L++AA + +
Sbjct: 50 YLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV 109
Query: 132 ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY 191
+ + +F+ L G+ G+ + Q RG + SV + +G +
Sbjct: 110 PWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPP 169
Query: 192 LLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDIS 251
LL L + + L M D S + +
Sbjct: 170 LLFLL-------GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND 222
Query: 252 IEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA 311
+ +++ + + L K W+ + + + +L+ GI
Sbjct: 223 YPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY--GILDWSPTYLKEVK 280
Query: 312 NAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEG 371
+ + S+ A F + T + W+ DK R M V +
Sbjct: 281 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW---- 336
Query: 372 FVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
+ + V+ G + + E
Sbjct: 337 -------MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALE 370
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 421 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.98 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.9 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.53 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.37 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.98 E-value=1.6e-32 Score=255.42 Aligned_cols=346 Identities=12% Similarity=0.046 Sum_probs=228.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 014654 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (421)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 125 (421)
+.+|.+...+.++.+...++...++...|.++ |+|+|.+|+|++.+++.+++.+++++.|+++||+|||+++..+.++.
T Consensus 21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 99 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 34566666677777777777777777778665 68999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----cchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----
Q 014654 126 IIGWLIISFS----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---- 197 (421)
Q Consensus 126 ~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---- 197 (421)
+++.++++++ ++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+..+|..+++.++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 179 (447)
T d1pw4a_ 100 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179 (447)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence 9999988775 58899999999999999999999999999999999999999999999999999888776554
Q ss_pred -chHHHHHhhhHHHHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHH
Q 014654 198 -NWRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAEL 275 (421)
Q Consensus 198 -~w~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (421)
+||+.|++.++..++..+ .+.+.+|+|+.......++.. +...++..+..+++....+...+..
T Consensus 180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (447)
T d1pw4a_ 180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK--------------NDYPDDYNEKAEQELTAKQIFMQYV 245 (447)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC--------------CC-------------CCTHHHHHHT
T ss_pred hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhh--------------hhcccchhhccccccchhhHHHHHH
Confidence 899998887766665544 444556555421111110000 0000001111111222233344455
Q ss_pred hhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHh
Q 014654 276 KRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLIS 352 (421)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 352 (421)
++++..+.......+ ..........+.+.++.+ .+.+... .......+..+++.++.|++.||++|++.....
T Consensus 246 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 321 (447)
T d1pw4a_ 246 LPNKLLWYIAIANVF----VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 321 (447)
T ss_dssp SSCHHHHHHHHHHHH----HHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HcCchHHHHHHHhhh----hhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccccc
Confidence 555443333322222 222244455566666554 4666555 666777888999999999999999987654444
Q ss_pred hHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 353 SSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
.....+............. ...+...+..++.+++ ..+..+....+..|.+|++.||+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~~~g~ 379 (447)
T d1pw4a_ 322 VFFMTLVTIATIVYWMNPA----------GNPTVDMICMIVIGFL-IYGPVMLIGLHALELAPKKAAGT 379 (447)
T ss_dssp HHHHHHHHHHHHHTTSCCT----------TCHHHHHHHHHHHHHH-HTHHHHHHHHHHHHTSCTTHHHH
T ss_pred chhHHHHHHHHHHHHhccc----------ccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCHHHHHH
Confidence 3333332222222111110 1112223333333322 22335667789999999988763
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=5.1e-24 Score=194.82 Aligned_cols=312 Identities=11% Similarity=0.015 Sum_probs=189.0
Q ss_pred hhhccccccchHH-HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhh-
Q 014654 63 GFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF- 140 (421)
Q Consensus 63 ~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~- 140 (421)
.+..+...|.+|. +.+++|+|++++|++.+++.++..+++++.|+++||+|||++++++..+..++..+..+..+...
T Consensus 20 ~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T d1pv7a_ 20 FFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 3444556677776 67789999999999999999999999999999999999999999999999888888887665443
Q ss_pred ---HHHHHHhhhcchhhhhccchhhhcccCCC--CcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhh-hHHHH
Q 014654 141 ---LFMGRLLEGFGVGVISYTVPVYIAEIAPQ--NMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLG-VLPCT 211 (421)
Q Consensus 141 ---l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~w~~~f~~~-~~~~~ 211 (421)
.++.+.+.+.+.+...........+..++ +++....+........+..+++.+++.+ +|+..+... ....+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 179 (417)
T d1pv7a_ 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALI 179 (417)
T ss_dssp HTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHH
Confidence 34455555555555555444444444332 3345556667777777888888877666 555555544 44444
Q ss_pred HHHhhhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHH
Q 014654 212 LLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLL 291 (421)
Q Consensus 212 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (421)
...+..+..+|+++. +.+.+ +..+.++...........+.+..+.........
T Consensus 180 ~~~~~~~~~~~~~~~---~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (417)
T d1pv7a_ 180 LAVLLFFAKTDAPSS---ATVAN------------------------AVGANHSAFSLKLALELFRQPKLWFLSLYVIGV 232 (417)
T ss_dssp HHHHHHSSCCCSCSS---SCSSH------------------------HHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccc---hhhhh------------------------hhhhhcccccccccccccccccccchhhhhHHH
Confidence 445556666666431 00000 001111122222333333333333333322222
Q ss_pred HHHhhhchHHHHHhHHHHHhhcCCC----chh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHH
Q 014654 292 VLQQLSGINGVLFYSSNIFANAGIS----SSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (421)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~g~~----~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (421)
.... .........+....... ... .......++..++..+.+++.||.++|+.+..+..+.+++.+.+..
T Consensus 233 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 308 (417)
T d1pv7a_ 233 SCTY----DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HHHH----HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH----HhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc
Confidence 2221 11111122222211111 111 3445556778889999999999999999999888888777666653
Q ss_pred HHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 366 AFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
. + ..+..+....+.+++++.. .+...+++.|.+|++.||+
T Consensus 309 ~---~------------~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~ 348 (417)
T d1pv7a_ 309 A---T------------SALEVVILKTLHMFEVPFL-LVGCFKYITSQFEVRFSAT 348 (417)
T ss_dssp C---C------------CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSCGGGHHH
T ss_pred c---c------------ccchhhHHHHHHHHHHHHH-HHHHHHHHHHHCCHhHHHH
Confidence 1 1 1123333333444444333 5667789999999998863
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=8.3e-15 Score=132.74 Aligned_cols=143 Identities=13% Similarity=0.061 Sum_probs=122.8
Q ss_pred hCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccc
Q 014654 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTV 159 (421)
Q Consensus 80 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 159 (421)
.+.+....+...+...++..++..+.+++.||+|+|+.+..+.++.+++.+...+.++.+.+++..++.|++.+...+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 333 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 34455667888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCcchhHhhHH-HHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhh-hccccC
Q 014654 160 PVYIAEIAPQNMRGSLGSVN-QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPE 222 (421)
Q Consensus 160 ~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~-~~~~~e 222 (421)
.+++.|.+|+++|+++.++. +....+|..++|.+++.+ ||+..|++.+++.++..+. .+.+++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999975 556778888888887766 8999998877766665543 344443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=1.5e-12 Score=119.22 Aligned_cols=143 Identities=12% Similarity=0.078 Sum_probs=108.4
Q ss_pred HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH---Hh--hcchhhHHHHHHhhhc
Q 014654 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SF--SKDSSFLFMGRLLEGF 150 (421)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~--~~~~~~l~~~r~l~G~ 150 (421)
+.+.++.+..+.++..+...++..++.++.|++.||++||+..........+..+.. .. ..+.+...+.-++.|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 355 (447)
T d1pw4a_ 276 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 355 (447)
T ss_dssp BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 456689999999999999999999999999999999998654443333322222222 21 3466777778888899
Q ss_pred chhhhhccchhhhcccCCCCcchhHhhHHHHHHHH-HHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhc
Q 014654 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (421)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~ 218 (421)
+.+...+....+..|.+|++.|+.+.++.+....+ |.+++|.+.+.+ ||+..|++.+...++..+...
T Consensus 356 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 356 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999998777665 566677776654 899888877666665554333
|