Citrus Sinensis ID: 014682

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
Protein Sequence
MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHEEHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccHHHHcccccccccHHHccccHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccccHHHHHHcccccccccccccccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccHcccccc
Coil and Loop (DISEMBL)
MIKDFQIAKReedigsyagyvgssfmFGRALTSVFWGLvadrygrkpviiMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLiigpalggflaqpaekypnlfsseslfgkfpyflpclcISLFAFGVTIAafwlpetlhrhnddddscdvSYDALESASAevkeeegreatpkksllknwplmSSIIVYCVFSLHDMAYSEIFSLWanspkklgglnystQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVltiplltsypyIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFIlqnravdqdqrgaanGIAMTGMSLfkaagpagggaLFSWAQKrldasflpgsqMVFFVLNVVEAIGVLMtfkpflaqrhd
Flexible Loop (DISEMBL)
mikdfqiakreediGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESAsaevkeeegreatpkksllknwplMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTfkpflaqrhd
Low Complexity Region (SEG)
MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTawgigliigpalggflaQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNddddscdvsydALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD
Disordered region (IsUnstruct)
************DIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR***********************************LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFL*****
Disordered Region (DISOPRED)
MIKDF**AKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESA*****************LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRA*****RGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLA****
Disordered Region (DISEMBL)
MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDAL******************KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD
Disordered Region (DISPRO)
*IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR*********************************KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLA****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	420	2.2.26 [Sep-21-2011]
Q94BZ1	478	Protein ZINC INDUCED FACI	yes	no	0.992	0.872	0.692	1e-168
Q8RWN2	486	Protein ZINC INDUCED FACI	no	no	0.988	0.853	0.677	1e-156
Q3EAQ5	484	Probable peptide/nitrate	no	no	0.978	0.849	0.605	1e-147
P25351	611	Uncharacterized membrane	yes	no	0.433	0.297	0.328	1e-21
P39843	400	Multidrug resistance prot	yes	no	0.738	0.775	0.267	8e-09
B4EYY4	402	Multidrug resistance prot	yes	no	0.342	0.358	0.289	1e-07
D8MQN9	411	Multidrug resistance prot	yes	no	0.380	0.389	0.279	2e-07
A8GCZ5	411	Multidrug resistance prot	yes	no	0.280	0.287	0.325	6e-07
P0A4K5	399	Multi-drug resistance eff	yes	no	0.278	0.293	0.322	8e-07
P0A4K4	399	Multi-drug resistance eff	yes	no	0.278	0.293	0.322	8e-07

>sp|Q94BZ1|ZIFL1_ARATH Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1

 Score =  592 bits (1527), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 291/420 (69%), Positives = 342/420 (81%), Gaps = 3/420 (0%)

Query: 1   MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
           MI DF IAK+EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FN
Sbjct: 62  MIDDFNIAKKEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFN 121

Query: 61  TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIG 120
           TLFGLS+NFWMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIG
Sbjct: 122 TLFGLSLNFWMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIG 181

Query: 121 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDD 180
           PA+GGFLAQPA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +
Sbjct: 182 PAIGGFLAQPAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFN 241

Query: 181 DDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFS 240
           DD    SYDAL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFS
Sbjct: 242 DDE---SYDALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFS 298

Query: 241 LWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP 300
           LWANSP+K GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + 
Sbjct: 299 LWANSPRKYGGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMV 358

Query: 301 LLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMT 360
           +L+ YP IA LSG  L   +  ASV K++L  S ITGLFILQN+AV QDQRGAANGIAMT
Sbjct: 359 VLSCYPLIAKLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMT 418

Query: 361 GMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD 420
            MSLFKA GPA  G +FSW++KR  A+FLPG+QMVFF+LNVV A+GV++TFKPFLA+   
Sbjct: 419 AMSLFKAIGPAAAGIIFSWSEKRQGAAFLPGTQMVFFILNVVLALGVVLTFKPFLAETQQ 478

Major facilitator superfamily (MFS) transporter probably involved in 2,4-dichlorophenoxyacetic acid (2,4-D) export.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWN2|ZIF1_ARATH Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2

 Score =  552 bits (1423), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 284/419 (67%), Positives = 332/419 (79%), Gaps = 4/419 (0%)

Query: 1   MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
           MI+DF +AK E+DIG YAG+VG SFM GRALTSVFWG+VADRYGRKP+I++GT S+ IFN
Sbjct: 63  MIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIFN 122

Query: 61  TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIG 120
            LFGLS NFWMA+ TRFLLGS N LLG +KAYA EIFR+E+QA  +S VSTAWGIGLIIG
Sbjct: 123 ALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLIIG 182

Query: 121 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDD 180
           PALGGFLAQPA+KYPN+FS ESLFG+F Y LPC  IS FA  VT+   ++PETLH H  D
Sbjct: 183 PALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKLD 242

Query: 181 DDSCDVSYDALESASAEVKEEEGR----EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYS 236
             S D SYD LE+AS E     G+    E    +SLLKNWPLMSSIIVYCV  LHD AYS
Sbjct: 243 SLSHDDSYDILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAYS 302

Query: 237 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV 296
           EIF+LWANSP+K GGL+YST  VG VLAI+G  L  FQ+ +YP  E++LGP++V R AG 
Sbjct: 303 EIFALWANSPRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAGA 362

Query: 297 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANG 356
           L IP+  SYP+IA LSG  L+ +LNCAS++ N+LSVS ITGL ILQNRAVDQ QRGAANG
Sbjct: 363 LMIPIQMSYPFIAGLSGLSLSLMLNCASILINVLSVSAITGLLILQNRAVDQSQRGAANG 422

Query: 357 IAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFL 415
           IAMT MSLFK  GPAG G LFSW+++RL+A+FLPGS MVFFVLNV+  +GV +TFKPFL
Sbjct: 423 IAMTAMSLFKTVGPAGAGILFSWSERRLNAAFLPGSHMVFFVLNVIVVVGVALTFKPFL 481

Major facilitator superfamily (MFS) transporter involved in zinc tolerance by participating in vacuolar sequestration of zinc.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EAQ5|PTR36_ARATH Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2

 Score =  521 bits (1342), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 259/428 (60%), Positives = 330/428 (77%), Gaps = 17/428 (3%)

Query: 1   MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
           MI+DF IAK+EEDIG YAG+VGSSFM GRALTS+FWG +ADRYGRKP+I++GT SV+IFN
Sbjct: 61  MIRDFHIAKQEEDIGFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFN 120

Query: 61  TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIG 120
           TLFGLS +FW+A+  RFLLG  N LLG I+AYA E+  EE+ AL LS VST+ GIGLI+G
Sbjct: 121 TLFGLSTSFWLAISVRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILG 180

Query: 121 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDD 180
           PA+GG+LAQPAEKYPN+FS  S+FG+FPYFLP L IS++A  V IA +WLPETLH     
Sbjct: 181 PAIGGYLAQPAEKYPNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTR--- 237

Query: 181 DDSCDVSYDALESASAEVKEEEG-----REATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 235
              C ++   L        E  G     ++   K SLL+N PLM+ IIVYCVFSL ++AY
Sbjct: 238 ---CRIAQGRLNPTELNDDESRGGGLDEQKIINKPSLLRNRPLMAIIIVYCVFSLQEIAY 294

Query: 236 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 295
           +EIFSLWA S +  GGL++S+Q VGEVLAI+G  LLVFQL +YP LE+ +G + V R++ 
Sbjct: 295 NEIFSLWAVSDRSYGGLSFSSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSA 354

Query: 296 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN 355
           VL IPLL+ YPYIA+LSG  L  ++NCAS++KN LS+S++TGLFI+ N+AV Q+QRGAAN
Sbjct: 355 VLLIPLLSCYPYIALLSGVTLHLVINCASIIKNALSISLVTGLFIMLNKAVPQNQRGAAN 414

Query: 356 GIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGS------QMVFFVLNVVEAIGVLM 409
           GI+MT MS+FK+ GPAGGG LFSWAQKR DA+FLPG       +MVF VLN+V+ +G+++
Sbjct: 415 GISMTAMSVFKSFGPAGGGVLFSWAQKRQDATFLPGQIFAPCDEMVFLVLNLVQLVGLIL 474

Query: 410 TFKPFLAQ 417
           TF P+++Q
Sbjct: 475 TFIPYISQ 482

Arabidopsis thaliana (taxid: 3702)

>sp|P25351|YCR3_YEAST Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 101/189 (53%), Gaps = 7/189 (3%)

Query: 1   MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
           M++DF IA  +  +  Y+GY+ SSF   + +++  WG  ++++GRK  +  G     +  
Sbjct: 44  MVRDFNIAPNDAQVSKYSGYLSSSFALCQVISAYHWGRFSEKHGRKITLTCGLIGTSVSL 103

Query: 61  TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFRE-EHQALGLSTVSTAWGIGLII 119
            + G S NF+ A++ R L+G LNG +G I+    EI  E +HQAL  ST+   +  G ++
Sbjct: 104 LILGFSRNFYQALVARSLMGLLNGNVGVIRTIIGEIATERKHQALAFSTMPLLFQFGAVV 163

Query: 120 GPALGGFLA---QPAEKYPNLFS--SESLFGKFPYFLPCLCISLF-AFGVTIAAFWLPET 173
           GP +GGFL        + P  F   ++ +   +PY LP + + +F  FG+T A  +L ET
Sbjct: 164 GPMIGGFLVFRDGTMNEVPLWFPHFAKRIIRSYPYALPNVVVCMFLMFGLTNATLFLEET 223

Query: 174 LHRHNDDDD 182
                D  D
Sbjct: 224 HPAFKDRRD 232

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P39843|BMR2_BACSU Multidrug resistance protein 2 OS=Bacillus subtilis (strain 168) GN=blt PE=3 SV=1

 Score = 62.0 bits (149), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 162/374 (43%), Gaps = 64/374 (17%)

Query: 15  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 74
           GS  GY+ ++F   + +TS F G   DR+GRK +II+G     +   +FGL  +  +   
Sbjct: 44  GSTMGYLVAAFAISQLITSPFAGRWVDRFGRKKMIILGLLIFSLSELIFGLGTHVSIFYF 103

Query: 75  TRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 133
           +R L G     + P + AY  +I   + ++  +  VS A   G IIGP  GGF+A    +
Sbjct: 104 SRILGGVSAAFIMPAVTAYVADITTLKERSKAMGYVSAAISTGFIIGPGAGGFIAGFGIR 163

Query: 134 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALES 193
            P  F+S               I+L A  VT + F L E+L            S +    
Sbjct: 164 MPFFFAS--------------AIALIA-AVT-SVFILKESL------------SIEERHQ 195

Query: 194 ASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWAN-----SPKK 248
            S+  KE    +   K+S+   + +   I+    F L   AY  +FSL+++     +PK 
Sbjct: 196 LSSHTKESNFIKDL-KRSIHPVYFIAFIIVFVMAFGLS--AYETVFSLFSDHKFGFTPKD 252

Query: 249 LGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE--RILGPIMV---ARIAGVLTIPLLT 303
           +  +   + +V  V+ +  F  LV +L     ++   I G I+      ++G LT+ L+T
Sbjct: 253 IAAIITISSIVAVVIQVLLFGKLVNKLGEKRMIQLCLITGAILAFVSTVMSGFLTVLLVT 312

Query: 304 SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS 363
            + ++A                  +LL  ++      L N A   +Q+G   G+  T  S
Sbjct: 313 CFIFLAF-----------------DLLRPALTAH---LSNMA--GNQQGFVAGMNSTYTS 350

Query: 364 LFKAAGPAGGGALF 377
           L    GPA GG LF
Sbjct: 351 LGNIFGPALGGILF 364

Energy-dependent efflux pump responsible for decreased drug accumulation in multi-drug-resistant cells. Probably uses a transmembrane proton gradient as the energy source. Causes the efflux of a variety of toxic substances, including such structurally diverse compounds as ethidium bromide, rhodamine and acridine dyes, tetraphenylphosphonium, puromycin, chloramphenicol, doxorubicin, and fluoroquinolone antibiotics.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|B4EYY4|MDTG_PROMH Multidrug resistance protein MdtG OS=Proteus mirabilis (strain HI4320) GN=mdtG PE=3 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 8/152 (5%)

Query: 9   KREEDIGSYAGYVGS-SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV 67
           K  E +  + G   S +F+F  A+ + FWG ++DR GRK +++     + I   L G + 
Sbjct: 45  KDHESLNLWTGVAFSITFLFS-AIAAPFWGKLSDRKGRKLMLLRSALGMAIVMVLIGFAQ 103

Query: 68  NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 127
           N W  ++ R LLG L G +    A        +     L T+ST    G +IGP +GG L
Sbjct: 104 NIWQLLILRALLGVLGGFVPNANALIATQVPVKKSGWALGTLSTGAVSGALIGPLIGGIL 163

Query: 128 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLF 159
           A      P  F + ++         C  ++LF
Sbjct: 164 ADLYGLRPVFFITAAV------LFICFIVTLF 189

Proteus mirabilis (strain HI4320) (taxid: 529507)

>sp|D8MQN9|MDTG_ERWBE Multidrug resistance protein MdtG OS=Erwinia billingiae (strain Eb661) GN=mdtG PE=3 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 8/168 (4%)

Query: 12  EDIGSYAGYVGS-SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW 70
             +  ++G V S +F+F  A+ S FWG +ADR GRK +++     + +   L GL+ + W
Sbjct: 51  HSLNMWSGLVFSITFLFS-AIASPFWGGLADRKGRKIMLLRSALGMSVVMVLMGLATSIW 109

Query: 71  MAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 130
             +  R +LG L G +    A              L  +ST    G +IGP +GG LA  
Sbjct: 110 QFLALRAVLGLLGGFVPNANALIATQVPRNKSGWALGWLSTGAVSGALIGPLIGGLLADS 169

Query: 131 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 178
               P  F + S+         C  ++LFA           + LH H 
Sbjct: 170 FGLRPVFFITASV------LFVCFIMTLFAVREEFVPVQKKDMLHAHQ 211

Erwinia billingiae (strain Eb661) (taxid: 634500)

>sp|A8GCZ5|MDTG_SERP5 Multidrug resistance protein MdtG OS=Serratia proteamaculans (strain 568) GN=mdtG PE=3 SV=1

 Score = 55.8 bits (133), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 11  EEDIGSYAGYVGS-SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 69
            + +  ++G V S +F+F  A+ S FWG +ADR GRK +++     + I   L G++ N 
Sbjct: 47  HQALNMWSGLVFSITFLFS-AIASPFWGGLADRRGRKLMLLRSALGMSIVMLLMGMAQNI 105

Query: 70  WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 129
           W  +  R +LG L G +    A              L T+ST    G +IGP +GG LA 
Sbjct: 106 WQFLALRAVLGLLGGFIPNANALIATQVPRNRSGWALGTLSTGGVSGALIGPLIGGLLAD 165

Serratia proteamaculans (strain 568) (taxid: 399741)

>sp|P0A4K5|PMRA_STRR6 Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pmrA PE=3 SV=1

 Score = 55.5 bits (132), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 11  EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--N 68
            + +  YAG   S      AL S  WG++AD+YGRKP++I    ++ I  T+ GL+   N
Sbjct: 42  SQQVAFYAGLAISVSAISAALFSPIWGILADKYGRKPMMIRAGLAMTI--TMGGLAFVPN 99

Query: 69  FWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 128
            +  +  R L G   G +    A       +E     L T+ST    G + GP +GGF+A
Sbjct: 100 IYWLIFLRLLNGVFAGFVPNATALIASQVPKEKSGSALGTLSTGVVAGTLTGPFIGGFIA 159

Query: 129 Q 129
           +
Sbjct: 160 E 160

Efflux pump for various substrates.

Streptococcus pneumoniae (strain ATCC BAA-255 / R6) (taxid: 171101)

>sp|P0A4K4|PMRA_STRPN Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=pmrA PE=3 SV=1

 Score = 55.5 bits (132), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 11  EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--N 68
            + +  YAG   S      AL S  WG++AD+YGRKP++I    ++ I  T+ GL+   N
Sbjct: 42  SQQVAFYAGLAISVSAISAALFSPIWGILADKYGRKPMMIRAGLAMTI--TMGGLAFVPN 99

Query: 69  FWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 128
            +  +  R L G   G +    A       +E     L T+ST    G + GP +GGF+A
Sbjct: 100 IYWLIFLRLLNGVFAGFVPNATALIASQVPKEKSGSALGTLSTGVVAGTLTGPFIGGFIA 159

Query: 129 Q 129
           +
Sbjct: 160 E 160

Efflux pump for various substrates.

Streptococcus pneumoniae (taxid: 1313)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
224097490	495	predicted protein [Populus trichocarpa]	1.0	0.848	0.772	0.0
359487104	1624	PREDICTED: uncharacterized protein LOC10	0.995	0.257	0.728	0.0
296085436	518	unnamed protein product [Vitis vinifera]	1.0	0.810	0.724	1e-180
225465403	487	PREDICTED: protein ZINC INDUCED FACILITA	0.997	0.860	0.745	1e-176
225465405	487	PREDICTED: protein ZINC INDUCED FACILITA	0.997	0.860	0.767	1e-174
297807399	479	hypothetical protein ARALYDRAFT_488196 [	0.990	0.868	0.706	1e-172
30684565	478	zinc induced facilitator-like 1 protein	0.992	0.872	0.692	1e-166
359481459	490	PREDICTED: protein ZINC INDUCED FACILITA	0.990	0.848	0.690	1e-165
224086687	478	predicted protein [Populus trichocarpa]	0.980	0.861	0.683	1e-163
224137524	465	predicted protein [Populus trichocarpa]	0.971	0.877	0.688	1e-163

>gi|224097490|ref|XP_002310957.1| predicted protein [Populus trichocarpa] gi|222850777|gb|EEE88324.1| predicted protein [Populus trichocarpa]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/426 (77%), Positives = 377/426 (88%), Gaps = 6/426 (1%)

Query: 1   MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
           MI+DF IA+REEDIG YAGYVGSSFM GRALTSVFWG+VADRYGRKPVI++GT +VVIFN
Sbjct: 63  MIRDFGIAEREEDIGYYAGYVGSSFMIGRALTSVFWGIVADRYGRKPVILLGTIAVVIFN 122

Query: 61  TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIG 120
           TLFGLSVNFWMA++TRFLLGSLNGLLGPIKAYA EIFR E+QALGLSTVSTAWG+GLIIG
Sbjct: 123 TLFGLSVNFWMAIITRFLLGSLNGLLGPIKAYAVEIFRAEYQALGLSTVSTAWGLGLIIG 182

Query: 121 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDD 180
           PALGGFLAQPAEKYPNLFS ESLFG+FPYFLPC CISLFA  VTI + WLPETLH HN+ 
Sbjct: 183 PALGGFLAQPAEKYPNLFSKESLFGRFPYFLPCFCISLFALVVTIVSCWLPETLHVHNEK 242

Query: 181 DDSCDVSYDALESASAEVK------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMA 234
             S + SYDALE+A+   K      +++GR+ +  +SLLKNWPLMSSIIVYC+FSLHDMA
Sbjct: 243 KTSSNDSYDALEAATGASKGDETRTDDKGRKPSSNESLLKNWPLMSSIIVYCIFSLHDMA 302

Query: 235 YSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA 294
           Y+EIFSLWA S +KLGGL Y+T+ VGEVLAI+GFSLLVFQLSLYPF+ERILGPI VA+IA
Sbjct: 303 YTEIFSLWAESSRKLGGLGYTTEDVGEVLAISGFSLLVFQLSLYPFVERILGPIPVAQIA 362

Query: 295 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAA 354
             L+I LL+SYP+IAMLSG GL+ L+NCAS++KN+ SVSI+TG+FILQN AVDQ+QRGAA
Sbjct: 363 AALSILLLSSYPFIAMLSGLGLSILINCASIMKNVFSVSIVTGMFILQNNAVDQNQRGAA 422

Query: 355 NGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPF 414
           NGI+MTGMSLFKA GPAGGGA+ SWAQ+R +A+FLPG QMVFF+LN VE IG+LMTFKPF
Sbjct: 423 NGISMTGMSLFKAVGPAGGGAILSWAQRRQNAAFLPGVQMVFFILNAVELIGLLMTFKPF 482

Query: 415 LAQRHD 420
           LAQR D
Sbjct: 483 LAQRQD 488

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487104|ref|XP_002274088.2| PREDICTED: uncharacterized protein LOC100259102 [Vitis vinifera]

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/423 (72%), Positives = 360/423 (85%), Gaps = 5/423 (1%)

Query: 1    MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
            MI+DF IAK E+DIG YAGY G+S+MFGRALTS+ WG+VADRYGRKPVI++GTASVVIFN
Sbjct: 1200 MIRDFNIAKTEKDIGYYAGYAGASYMFGRALTSILWGMVADRYGRKPVILVGTASVVIFN 1259

Query: 61   TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIG 120
            TLFGLS+N+WMA+ +RFLLGS++ LLGPI AYA EIFREE+QALGLST++TAWG+GLIIG
Sbjct: 1260 TLFGLSLNYWMAISSRFLLGSMSTLLGPIMAYATEIFREEYQALGLSTINTAWGVGLIIG 1319

Query: 121  PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDD 180
            PALGGFLAQPAEKYPN+FS ES+FG+FPYFLPCLC S++AFG+TIA  WL ETLH HN++
Sbjct: 1320 PALGGFLAQPAEKYPNIFSKESIFGRFPYFLPCLCTSVYAFGITIACCWLQETLHTHNEN 1379

Query: 181  DDSCDVSYDALE-----SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 235
            +     SY+ALE     +A   V E E  + T K+SL+KNWPLMSSIIV+CVFSLHDMAY
Sbjct: 1380 NKLSKNSYNALEAPCGFNAEEAVNEIEANKPTSKESLIKNWPLMSSIIVFCVFSLHDMAY 1439

Query: 236  SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 295
            SEIFSLWA SP+K GGL+YST  VG VLAI+GF +LVFQL LYP+LE++LGPI++ RIAG
Sbjct: 1440 SEIFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLFLYPYLEKLLGPIIICRIAG 1499

Query: 296  VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN 355
            VL+IPLL  YP IAMLSGF L+  LNCAS +KN+LSVSI T L ILQNRAV+Q QRGAAN
Sbjct: 1500 VLSIPLLAIYPLIAMLSGFNLSLALNCASAMKNVLSVSIGTSLIILQNRAVEQHQRGAAN 1559

Query: 356  GIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFL 415
            GI MT MSLFKAAGPAGGG +FSWAQ R  A+F PG QM+FF+LNVVEAI VLMTFKPFL
Sbjct: 1560 GITMTTMSLFKAAGPAGGGVIFSWAQGRQRAAFFPGDQMIFFILNVVEAIAVLMTFKPFL 1619

Query: 416  AQR 418
             +R
Sbjct: 1620 VRR 1622

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085436|emb|CBI29168.3| unnamed protein product [Vitis vinifera]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 308/425 (72%), Positives = 360/425 (84%), Gaps = 5/425 (1%)

Query: 1   MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
           MI+DF IAK E+DIG YAGY G+S+MFGRALTS+ WG+VADRYGRKPVI++GTASVVIFN
Sbjct: 94  MIRDFNIAKTEKDIGYYAGYAGASYMFGRALTSILWGMVADRYGRKPVILVGTASVVIFN 153

Query: 61  TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIG 120
           TLFGLS+N+WMA+ +RFLLGS++ LLGPI AYA EIFREE+QALGLST++TAWG+GLIIG
Sbjct: 154 TLFGLSLNYWMAISSRFLLGSMSTLLGPIMAYATEIFREEYQALGLSTINTAWGVGLIIG 213

Query: 121 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDD 180
           PALGGFLAQPAEKYPN+FS ES+FG+FPYFLPCLC S++AFG+TIA  WL ETLH HN++
Sbjct: 214 PALGGFLAQPAEKYPNIFSKESIFGRFPYFLPCLCTSVYAFGITIACCWLQETLHTHNEN 273

Query: 181 DDSCDVSYDALE-----SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 235
           +     SY+ALE     +A   V E E  + T K+SL+KNWPLMSSIIV+CVFSLHDMAY
Sbjct: 274 NKLSKNSYNALEAPCGFNAEEAVNEIEANKPTSKESLIKNWPLMSSIIVFCVFSLHDMAY 333

Query: 236 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 295
           SEIFSLWA SP+K GGL+YST  VG VLAI+GF +LVFQL LYP+LE++LGPI++ RIAG
Sbjct: 334 SEIFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLFLYPYLEKLLGPIIICRIAG 393

Query: 296 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN 355
           VL+IPLL  YP IAMLSGF L+  LNCAS +KN+LSVSI T L ILQNRAV+Q QRGAAN
Sbjct: 394 VLSIPLLAIYPLIAMLSGFNLSLALNCASAMKNVLSVSIGTSLIILQNRAVEQHQRGAAN 453

Query: 356 GIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFL 415
           GI MT MSLFKAAGPAGGG +FSWAQ R  A+F PG QM+FF+LNVVEAI VLMTFKPFL
Sbjct: 454 GITMTTMSLFKAAGPAGGGVIFSWAQGRQRAAFFPGDQMIFFILNVVEAIAVLMTFKPFL 513

Query: 416 AQRHD 420
            +R  
Sbjct: 514 VRRSQ 518

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465403|ref|XP_002277598.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085440|emb|CBI29172.3| unnamed protein product [Vitis vinifera]

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 317/425 (74%), Positives = 364/425 (85%), Gaps = 6/425 (1%)

Query: 1   MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
           MI+DF IAKREEDIG YAGYVGS+FM GRALTSV WG+VADRYGRKPVI++GT +VVIFN
Sbjct: 62  MIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVAWGMVADRYGRKPVIMIGTITVVIFN 121

Query: 61  TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIG 120
           TLFGLSVNFWMA+ TRFLLGSLNG+LGPIKAYA EIFR+E+QALGLSTVSTA GIGLIIG
Sbjct: 122 TLFGLSVNFWMALSTRFLLGSLNGVLGPIKAYAAEIFRDEYQALGLSTVSTARGIGLIIG 181

Query: 121 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDD 180
           PALGGFLAQPAEKYP++FS +SLFG+FPYFLPCL IS++A  +T+A  WLPETLH HN++
Sbjct: 182 PALGGFLAQPAEKYPDIFSEDSLFGRFPYFLPCLFISVYAMIITVACCWLPETLHTHNEN 241

Query: 181 DDSCDVSYDALESAS----AEVKEEE--GREATPKKSLLKNWPLMSSIIVYCVFSLHDMA 234
             S + SYDALE A+    A+ KE+E  G E T  +SL  NWPLMSSII+YCVFSLHD+A
Sbjct: 242 KKSREDSYDALEGANGGSNAKEKEQEIEGSEPTSNESLFMNWPLMSSIIIYCVFSLHDIA 301

Query: 235 YSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA 294
           Y EIFSLWA SP+  GGL+YST  VG VLAI+GF L V Q++LYP +ER LGP+M+ RIA
Sbjct: 302 YIEIFSLWAVSPRIHGGLSYSTDDVGVVLAISGFGLFVSQVTLYPLVERFLGPVMICRIA 361

Query: 295 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAA 354
           GVL+IPLL SYP IAMLSG  L+ +LNCASV+KN+LSVSIITG+F+LQN AVDQ QRG A
Sbjct: 362 GVLSIPLLASYPLIAMLSGSTLSVVLNCASVLKNVLSVSIITGMFLLQNSAVDQHQRGTA 421

Query: 355 NGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPF 414
           NGI+MT MSLFKAAGPAGGGALFSWAQKR D++F PG QMVF +LNVVEAIG+LMTFKPF
Sbjct: 422 NGISMTAMSLFKAAGPAGGGALFSWAQKRQDSAFFPGDQMVFLILNVVEAIGLLMTFKPF 481

Query: 415 LAQRH 419
           L QR 
Sbjct: 482 LVQRR 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465405|ref|XP_002277751.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085442|emb|CBI29174.3| unnamed protein product [Vitis vinifera]

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 326/425 (76%), Positives = 368/425 (86%), Gaps = 6/425 (1%)

Query: 1   MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
           MI+DF IAKREEDIG YAGYVGS+FM GRALTSV WG+VADRYGRKPVI++GT +VVIFN
Sbjct: 62  MIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVAWGMVADRYGRKPVIMIGTIAVVIFN 121

Query: 61  TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIG 120
           TLFGLSVNFWMA+ TRFLLGSLNGLLGPIKAYA EIFR+E+QALGLSTVSTAWGIGLIIG
Sbjct: 122 TLFGLSVNFWMALSTRFLLGSLNGLLGPIKAYAAEIFRDEYQALGLSTVSTAWGIGLIIG 181

Query: 121 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDD 180
           PALGGFLAQPAEKYP++FS +SLFG+FPYFLPCL IS++A  VT+A  WLPETLH HN++
Sbjct: 182 PALGGFLAQPAEKYPDIFSEDSLFGRFPYFLPCLFISVYAMIVTVACCWLPETLHTHNEN 241

Query: 181 DDSCDVSYDALESAS----AEVKEEE--GREATPKKSLLKNWPLMSSIIVYCVFSLHDMA 234
             S + SYDALE+A+    A+ KE+E  G E T  +SL  NWPLMSSIIVYCVFSLHDMA
Sbjct: 242 KKSREDSYDALEAANGGSNAKEKEQEIEGSEPTSNESLFMNWPLMSSIIVYCVFSLHDMA 301

Query: 235 YSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA 294
           Y+EIFSLWA SP+  GGL+YST  VG VLAI+GF LLV QL+LYP +ER LGP+M+ RIA
Sbjct: 302 YTEIFSLWAVSPRIHGGLSYSTDDVGVVLAISGFGLLVSQLTLYPLVERFLGPVMICRIA 361

Query: 295 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAA 354
           GVL+IPLL SYP IAMLSG  L+ +LNCASV+KN+LSVSIITGLF+LQN AVDQ QRG A
Sbjct: 362 GVLSIPLLASYPLIAMLSGSSLSVVLNCASVLKNVLSVSIITGLFLLQNSAVDQHQRGTA 421

Query: 355 NGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPF 414
           NGI+MT MSLFKAAGPAGGGALFSWAQKR D++F PG QMVF +LNVVEAIGVLMTFKPF
Sbjct: 422 NGISMTAMSLFKAAGPAGGGALFSWAQKRQDSAFFPGDQMVFLILNVVEAIGVLMTFKPF 481

Query: 415 LAQRH 419
           L QR 
Sbjct: 482 LVQRR 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807399|ref|XP_002871583.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata] gi|297317420|gb|EFH47842.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata]

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 298/422 (70%), Positives = 345/422 (81%), Gaps = 6/422 (1%)

Query: 1   MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
           MI DF IAK+EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FN
Sbjct: 62  MIDDFNIAKKEEDIGFYAGFVGCSFMLGRAFTSVIWGLVADRYGRKPVILIGTASVVVFN 121

Query: 61  TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIG 120
           TLFGLS+NFWMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIG
Sbjct: 122 TLFGLSLNFWMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIG 181

Query: 121 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN-- 178
           PA+GGFLAQPA +YP+LFS +S+FGKFP+FLPC  IS+FAF VTI + W+PETLH H   
Sbjct: 182 PAIGGFLAQPATQYPSLFSQDSIFGKFPFFLPCFAISVFAFLVTIISLWIPETLHNHKYV 241

Query: 179 DDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEI 238
           DDDDS    +DAL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EI
Sbjct: 242 DDDDS----FDALKYLSHDPESNKVVERNEKSSLLNNWPLISSIIVYCVFSLHDMAYTEI 297

Query: 239 FSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLT 298
           FSLWANSP+K GGL YST  VG VLAI+GF LL+FQLSLY + ER+LGPI+V RI+G+L 
Sbjct: 298 FSLWANSPRKYGGLGYSTADVGSVLAISGFGLLIFQLSLYSYAERLLGPIIVTRISGILA 357

Query: 299 IPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIA 358
           + +L+ YP IA LSG  L   +N ASV KN+LS S ITGLFILQN AV QDQRGAANGIA
Sbjct: 358 MVILSCYPLIAKLSGLALTLAVNSASVAKNVLSTSAITGLFILQNNAVRQDQRGAANGIA 417

Query: 359 MTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQR 418
           MT MSLFKA GPA  G +FSW++KR DA+F PG+QMVFF+LNVV A+GVLMTFKPFLA+ 
Sbjct: 418 MTAMSLFKAIGPAAAGIIFSWSEKRQDAAFFPGTQMVFFILNVVLALGVLMTFKPFLAET 477

Query: 419 HD 420
             
Sbjct: 478 QQ 479

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684565|ref|NP_851036.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] gi|75249957|sp|Q94BZ1.1|ZIFL1_ARATH RecName: Full=Protein ZINC INDUCED FACILITATOR-LIKE 1; AltName: Full=Protein ZIF-LIKE 1 gi|14517414|gb|AAK62597.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|17065582|gb|AAL32945.1| transporter-like protein [Arabidopsis thaliana] gi|20857393|gb|AAM26717.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|332004552|gb|AED91935.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana]

 Score =  592 bits (1527), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 291/420 (69%), Positives = 342/420 (81%), Gaps = 3/420 (0%)

Query: 1   MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
           MI DF IAK+EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FN
Sbjct: 62  MIDDFNIAKKEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFN 121

Query: 61  TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIG 120
           TLFGLS+NFWMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIG
Sbjct: 122 TLFGLSLNFWMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIG 181

Query: 121 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDD 180
           PA+GGFLAQPA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +
Sbjct: 182 PAIGGFLAQPAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFN 241

Query: 181 DDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFS 240
           DD    SYDAL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFS
Sbjct: 242 DDE---SYDALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFS 298

Query: 241 LWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP 300
           LWANSP+K GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + 
Sbjct: 299 LWANSPRKYGGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMV 358

Query: 301 LLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMT 360
           +L+ YP IA LSG  L   +  ASV K++L  S ITGLFILQN+AV QDQRGAANGIAMT
Sbjct: 359 VLSCYPLIAKLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMT 418

Query: 361 GMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD 420
            MSLFKA GPA  G +FSW++KR  A+FLPG+QMVFF+LNVV A+GV++TFKPFLA+   
Sbjct: 419 AMSLFKAIGPAAAGIIFSWSEKRQGAAFLPGTQMVFFILNVVLALGVVLTFKPFLAETQQ 478

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481459|ref|XP_003632620.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Vitis vinifera] gi|297741718|emb|CBI32850.3| unnamed protein product [Vitis vinifera]

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 290/420 (69%), Positives = 350/420 (83%), Gaps = 4/420 (0%)

Query: 1   MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
           MI+DF IAKREEDIG YAGYVGSSFMFGRALTSV WG+VADRYGRKPVI  G  +++IFN
Sbjct: 64  MIRDFHIAKREEDIGFYAGYVGSSFMFGRALTSVIWGMVADRYGRKPVITAGLIALIIFN 123

Query: 61  TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIG 120
           TLFGLS N WMA+ TRFLLGS  G+LGP++AYA E+ R+E+QALG+S +STAWGIGL+IG
Sbjct: 124 TLFGLSTNVWMALSTRFLLGSFCGILGPMRAYASEVCRKEYQALGMSIISTAWGIGLVIG 183

Query: 121 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDD 180
           PALGGFLAQPAEK+P++FS ESLFG+FPYFLPCL IS FA GV++  +WLPETLH H ++
Sbjct: 184 PALGGFLAQPAEKFPHIFSKESLFGRFPYFLPCLLISTFALGVSVLCYWLPETLHIHKEN 243

Query: 181 DDSCDVSYDALESASAEVKEE----EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYS 236
            +  ++    + +   +VKE+    EG+    ++SLLKNWPLMSSIIVYCVF LHDMAY+
Sbjct: 244 KEQDELYAWEVAAYGCDVKEKLKKFEGKGPNQQQSLLKNWPLMSSIIVYCVFQLHDMAYA 303

Query: 237 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV 296
           EIFSLWA SP + GGL+YST  VGEVLA++G  LL+FQL LYP LERILGP+MV+RI  V
Sbjct: 304 EIFSLWAISPSEYGGLSYSTADVGEVLAMSGLGLLLFQLFLYPPLERILGPVMVSRIGAV 363

Query: 297 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANG 356
           LT+PLL+SYP IAMLSG GL+ L+NCAS++KN+L VSI TGLF+LQNRAV Q QRGAANG
Sbjct: 364 LTVPLLSSYPLIAMLSGVGLSLLINCASLLKNVLCVSITTGLFLLQNRAVTQQQRGAANG 423

Query: 357 IAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLA 416
           I+M+ MS FKA GPAGGG+LFSWA KR + SFLPGS+MVFF+LN++E +G+ MTFKPFL 
Sbjct: 424 ISMSAMSFFKAVGPAGGGSLFSWALKRQNDSFLPGSRMVFFILNIIEVLGLFMTFKPFLT 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086687|ref|XP_002307932.1| predicted protein [Populus trichocarpa] gi|222853908|gb|EEE91455.1| predicted protein [Populus trichocarpa]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 287/420 (68%), Positives = 346/420 (82%), Gaps = 8/420 (1%)

Query: 1   MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
           MI+D  IAKREEDIG YAGYVGS+FMFGRALTSV WG++ADRYGRKPVI+ GT SVVIFN
Sbjct: 64  MIRDLHIAKREEDIGYYAGYVGSAFMFGRALTSVLWGMIADRYGRKPVIMFGTISVVIFN 123

Query: 61  TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIG 120
           TLFG S NFWMAV TRFLLGSL G+LGP++AYA E+ R+E+QALG+S +ST+WGIGL+IG
Sbjct: 124 TLFGFSTNFWMAVSTRFLLGSLCGILGPMRAYASEVCRKEYQALGMSIISTSWGIGLVIG 183

Query: 121 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDD 180
           PALGGFLAQPA+KYPN+FS++SLFG+FPY LPCL IS+F+ GV      LPETLH H  +
Sbjct: 184 PALGGFLAQPAQKYPNIFSTDSLFGRFPYLLPCLLISIFSVGVIAVCCLLPETLHSHVGN 243

Query: 181 DDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFS 240
            + C+ S  AL +A+ E         +P+KSLLKNWPL+SSIIVYCVF LHDMAY+EIFS
Sbjct: 244 GEECNDSV-ALGAAAFE-------SNSPRKSLLKNWPLISSIIVYCVFQLHDMAYAEIFS 295

Query: 241 LWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP 300
           LWA SP+K GGL++ST  VGEVLA +G  LL+FQL +YP +ER  GP+MV+RI  VLTIP
Sbjct: 296 LWAVSPRKNGGLSFSTADVGEVLAFSGLGLLLFQLFIYPLVERNFGPVMVSRIGAVLTIP 355

Query: 301 LLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMT 360
           LL+SYP++AML G  L  L+NCAS++KN+L+VSI TGLF+LQNR+V Q QRGAANGI+M+
Sbjct: 356 LLSSYPFLAMLKGLALMLLINCASILKNVLAVSITTGLFLLQNRSVTQQQRGAANGISMS 415

Query: 361 GMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD 420
            MSLFKA GPA GG+LFSWAQKR DA F PG QM+FF+LN++E IG+L+TFKPFLA   D
Sbjct: 416 AMSLFKAIGPAAGGSLFSWAQKRQDAFFFPGDQMIFFLLNMIEVIGLLLTFKPFLALPDD 475

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137524|ref|XP_002322579.1| predicted protein [Populus trichocarpa] gi|222867209|gb|EEF04340.1| predicted protein [Populus trichocarpa]

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 287/417 (68%), Positives = 345/417 (82%), Gaps = 9/417 (2%)

Query: 1   MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
           MI+DF IAKREEDIG YAGYVGS+FMFGRALTSV WG++ADRYGRKPVII GT SVVIFN
Sbjct: 57  MIRDFHIAKREEDIGYYAGYVGSAFMFGRALTSVLWGMIADRYGRKPVIIFGTVSVVIFN 116

Query: 61  TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIG 120
           TLFGLS +FWMA+ TRFLLGSL G+LGP++AYA E+ R+E+QALG+S +ST+WGIGL+IG
Sbjct: 117 TLFGLSTSFWMAISTRFLLGSLCGILGPMRAYASEVCRKEYQALGMSIISTSWGIGLVIG 176

Query: 121 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDD 180
           PALGGFLAQPAEK+PN+FSS+SLFG+FPY LPCL IS+F+ GV +    LPET+H H  +
Sbjct: 177 PALGGFLAQPAEKFPNIFSSDSLFGRFPYLLPCLLISIFSVGVLVVCCLLPETIHNHKGN 236

Query: 181 DDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFS 240
           D+ C+ S DAL + + E    +       KSLLKNWPL+SSIIVYCVF LHDMAY+EIFS
Sbjct: 237 DEECNDS-DALGATTFESNSSQ-------KSLLKNWPLISSIIVYCVFQLHDMAYAEIFS 288

Query: 241 LWANSPKKLGGLNYSTQMVGEVLAITG-FSLLVFQLSLYPFLERILGPIMVARIAGVLTI 299
           LWA SP+K GGL++ST  VGEVLA +G F LL+FQL +YP  ER  GP+MV+R+  VLTI
Sbjct: 289 LWAVSPRKNGGLSFSTADVGEVLAFSGSFGLLLFQLFIYPVAERNFGPVMVSRLGAVLTI 348

Query: 300 PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAM 359
           PLL+SYP+IA+L G  L  L+NCAS++KN+LSVSI TGLF+LQNR+V Q QRGAANGI+M
Sbjct: 349 PLLSSYPFIALLKGLTLMLLINCASILKNVLSVSITTGLFLLQNRSVAQQQRGAANGISM 408

Query: 360 TGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLA 416
           + MSLFKA GPA GG+LFSWAQKR  A FLPG Q+VFF LN++E IG+ +TFKPFLA
Sbjct: 409 SAMSLFKAIGPAAGGSLFSWAQKRQSAFFLPGDQIVFFFLNMIEVIGLFLTFKPFLA 465

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
TAIR|locus:2177105	478	ZIFL1 "zinc induced facilitato	0.985	0.866	0.647	2.4e-140
TAIR|locus:2173254	486	ZIF1 "zinc induced facilitator	0.988	0.853	0.622	1.5e-136
TAIR|locus:2101109	484	ZIFL2 "AT3G43790" [Arabidopsis	0.990	0.859	0.579	6.1e-126
ASPGD|ASPL0000053890	591	AN0890 [Emericella nidulans (t	0.411	0.292	0.348	1e-36
ASPGD|ASPL0000051539	480	AN1423 [Emericella nidulans (t	0.369	0.322	0.354	1.1e-30
DICTYBASE|DDB_G0269964	665	DDB_G0269964 "Uncharacterized	0.4	0.252	0.325	1.5e-29
ASPGD|ASPL0000011265	530	AN4019 [Emericella nidulans (t	0.392	0.311	0.281	2.3e-25
TAIR|locus:2159108	809	AT5G13940 [Arabidopsis thalian	0.247	0.128	0.442	7.1e-24
CGD|CAL0004954	546	orf19.3432 [Candida albicans (	0.259	0.199	0.4	2.2e-23
CGD|CAL0002781	633	orf19.4550 [Candida albicans (	0.259	0.172	0.4	3e-23

TAIR|locus:2177105 ZIFL1 "zinc induced facilitator-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1373 (488.4 bits), Expect = 2.4e-140, P = 2.4e-140
 Identities = 270/417 (64%), Positives = 319/417 (76%)

Query:     1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
             MI DF IAK+EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FN
Sbjct:    62 MIDDFNIAKKEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFN 121

Query:    61 TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXX 120
             TLFGLS+NFWMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VST         
Sbjct:   122 TLFGLSLNFWMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIG 181

Query:   121 XXXXXXXXQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNXX 180
                     QPA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H   
Sbjct:   182 PAIGGFLAQPAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFN 241

Query:   181 XXXXXXXXXALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFS 240
                      AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFS
Sbjct:   242 DDESYD---ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFS 298

Query:   241 LWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP 300
             LWANSP+K GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + 
Sbjct:   299 LWANSPRKYGGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMV 358

Query:   301 LLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMT 360
             +L+ YP IA LSG  L   +  ASV K++L  S ITGLFILQN+AV QDQRGAANGIAMT
Sbjct:   359 VLSCYPLIAKLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMT 418

Query:   361 GMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ 417
              MSLFKA GPA  G +FSW++KR  A+FLPG+QMVFF+LNVV A+GV++TFKPFLA+
Sbjct:   419 AMSLFKAIGPAAAGIIFSWSEKRQGAAFLPGTQMVFFILNVVLALGVVLTFKPFLAE 475

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2173254 ZIF1 "zinc induced facilitator 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1337 (475.7 bits), Expect = 1.5e-136, P = 1.5e-136
 Identities = 261/419 (62%), Positives = 309/419 (73%)

Query:     1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
             MI+DF +AK E+DIG YAG+VG SFM GRALTSVFWG+VADRYGRKP+I++GT S+ IFN
Sbjct:    63 MIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIFN 122

Query:    61 TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXX 120
              LFGLS NFWMA+ TRFLLGS N LLG +KAYA EIFR+E+QA  +S VST         
Sbjct:   123 ALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLIIG 182

Query:   121 XXXXXXXXQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNXX 180
                     QPA+KYPN+FS ESLFG+F Y LPC  IS FA  VT+   ++PETLH H   
Sbjct:   183 PALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKLD 242

Query:   181 XXXXXXXXXALESASAEVKEEEGR----EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYS 236
                       LE+AS E     G+    E    +SLLKNWPLMSSIIVYCV  LHD AYS
Sbjct:   243 SLSHDDSYDILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAYS 302

Query:   237 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV 296
             EIF+LWANSP+K GGL+YST  VG VLAI+G  L  FQ+ +YP  E++LGP++V R AG 
Sbjct:   303 EIFALWANSPRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAGA 362

Query:   297 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANG 356
             L IP+  SYP+IA LSG  L+ +LNCAS++ N+LSVS ITGL ILQNRAVDQ QRGAANG
Sbjct:   363 LMIPIQMSYPFIAGLSGLSLSLMLNCASILINVLSVSAITGLLILQNRAVDQSQRGAANG 422

Query:   357 IAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFL 415
             IAMT MSLFK  GPAG G LFSW+++RL+A+FLPGS MVFFVLNV+  +GV +TFKPFL
Sbjct:   423 IAMTAMSLFKTVGPAGAGILFSWSERRLNAAFLPGSHMVFFVLNVIVVVGVALTFKPFL 481

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010043 "response to zinc ion" evidence=IEP

GO:0055069 "zinc ion homeostasis" evidence=IMP

TAIR|locus:2101109 ZIFL2 "AT3G43790" [Arabidopsis thaliana (taxid:3702)]

 Score = 1237 (440.5 bits), Expect = 6.1e-126, P = 6.1e-126
 Identities = 245/423 (57%), Positives = 312/423 (73%)

Query:     1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
             MI+DF IAK+EEDIG YAG+VGSSFM GRALTS+FWG +ADRYGRKP+I++GT SV+IFN
Sbjct:    61 MIRDFHIAKQEEDIGFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFN 120

Query:    61 TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXX 120
             TLFGLS +FW+A+  RFLLG  N LLG I+AYA E+  EE+ AL LS VST         
Sbjct:   121 TLFGLSTSFWLAISVRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILG 180

Query:   121 XXXXXXXXQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNXX 180
                     QPAEKYPN+FS  S+FG+FPYFLP L IS++A  V IA +WLPETLH     
Sbjct:   181 PAIGGYLAQPAEKYPNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTRCRI 240

Query:   181 XXXXXXXXXALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFS 240
                        +  S     +E ++   K SLL+N PLM+ IIVYCVFSL ++AY+EIFS
Sbjct:   241 AQGRLNPTELNDDESRGGGLDE-QKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFS 299

Query:   241 LWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP 300
             LWA S +  GGL++S+Q VGEVLAI+G  LLVFQL +YP LE+ +G + V R++ VL IP
Sbjct:   300 LWAVSDRSYGGLSFSSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIP 359

Query:   301 LLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMT 360
             LL+ YPYIA+LSG  L  ++NCAS++KN LS+S++TGLFI+ N+AV Q+QRGAANGI+MT
Sbjct:   360 LLSCYPYIALLSGVTLHLVINCASIIKNALSISLVTGLFIMLNKAVPQNQRGAANGISMT 419

Query:   361 GMSLFKAAGPAGGGALFSWAQKRLDASFLPGS------QMVFFVLNVVEAIGVLMTFKPF 414
              MS+FK+ GPAGGG LFSWAQKR DA+FLPG       +MVF VLN+V+ +G+++TF P+
Sbjct:   420 AMSVFKSFGPAGGGVLFSWAQKRQDATFLPGQIFAPCDEMVFLVLNLVQLVGLILTFIPY 479

Query:   415 LAQ 417
             ++Q
Sbjct:   480 ISQ 482

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

ASPGD|ASPL0000053890 AN0890 [Emericella nidulans (taxid:162425)]

 Score = 283 (104.7 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 61/175 (34%), Positives = 88/175 (50%)

Query:     1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
             M++ F +   +  I  YAG + SSF F      +FWG ++D+ GRKPV+IMG     I  
Sbjct:    52 MVESFHVTSNDRKIALYAGLITSSFTFAEFSAGMFWGRMSDKIGRKPVLIMGLVGTAISM 111

Query:    61 TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFR-EEHQALGLSTVSTXXXXXXXX 119
              +FG + N   A++ R L G LNG +G ++    EI   +EHQ    S +          
Sbjct:   112 VVFGFAPNLATAMIARALGGLLNGNIGVLQTTVAEIVTVKEHQPRAYSIMPFVWCLGSII 171

Query:   120 XXXXXXXXXQPAEKYPNLFSSESLFGKFPYFLPCL-CISLFAFGVTIAAFWLPET 173
                      QP + YP LFS ES+F KFP+ LP L C+ +   G+ +   +L ET
Sbjct:   172 GPAMGGALSQPCDNYPWLFSGESIFKKFPFLLPNLVCVVVLMTGIVVGLLFLEET 226

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

ASPGD|ASPL0000051539 AN1423 [Emericella nidulans (taxid:162425)]

 Score = 259 (96.2 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
 Identities = 62/175 (35%), Positives = 94/175 (53%)

Query:     1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
             M+KDF + +   D   YAG + ++F    A T +FWG ++DR GRKPVII G A  ++  
Sbjct:     1 MVKDFHMGEGS-DASFYAGILVATFSLVEAFTGMFWGALSDRVGRKPVIISGLAGTIVSL 59

Query:    61 TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIF-REEHQALGLSTVSTXXXXXXXX 119
              + G + N+W+A+L R L G LNG +G I+    EI  R EH+   +  +          
Sbjct:    60 LIVGFAPNYWVALLGRGLGGLLNGNIGVIQTMVGEIVKRPEHERPAIGGL---------- 109

Query:   120 XXXXXXXXXQPAEKYPNLFSSESLFGKFPYFLP-CLCISLFAFGVTIAAFWLPET 173
                      +PA+ YP++FS + +FG+FPY LP  +C +L    +  A  +L ET
Sbjct:   110 -------LAKPADNYPSVFSRDGIFGRFPYLLPNVVCSTLLLGSILFAWAFLQET 157

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

DICTYBASE|DDB_G0269964 DDB_G0269964 "Uncharacterized membrane protein YCR023C" [Dictyostelium discoideum (taxid:44689)]

 Score = 240 (89.5 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
 Identities = 55/169 (32%), Positives = 81/169 (47%)

Query:     7 IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS 66
             +  + E +G YAG++ SSF   + L+S FWG +ADR GRKP++I G+   VI     G S
Sbjct:    49 VTDKAELVGYYAGFIASSFSAAQFLSSFFWGKMADRLGRKPILIFGSVGSVISLLCIGTS 108

Query:    67 VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXX 126
              +  M +L+R + G LNG +G +K Y  E   + +Q      V                 
Sbjct:   109 KSLVMLILSRSINGLLNGNIGVVKTYIGECTDKTNQVEAFGWVGLTWGLGSILGPSIGGL 168

Query:   127 XXQPAEKYPNLFSSESLFGKFPYFLPCLCIS-LFAFGVTIAAFWLPETL 174
                P +   ++F    LF  FP+FLP L I+ L   G      ++ ETL
Sbjct:   169 LADPVKNMSSIFKGSKLFELFPFFLPNLVIAFLTIIGCVFTQLYMKETL 217

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

ASPGD|ASPL0000011265 AN4019 [Emericella nidulans (taxid:162425)]

 Score = 235 (87.8 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
 Identities = 47/167 (28%), Positives = 84/167 (50%)

Query:    11 EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW 70
             + ++  +AG   +   F +A  +V+WG  +DR+GRKP+I++G  + ++ +  FGLS +  
Sbjct:    45 QSEVAKWAGLTSAISSFSQAAMAVYWGTASDRFGRKPIILLGLTATMVLSLAFGLSKSLP 104

Query:    71 MAVLTRFLLGSLNGLLGPIKAYACEIFRE-EHQALGLSTVSTXXXXXXXXXXXXXXXXXQ 129
             M +  R ++G +NG +G I+    E+ ++ E Q    S +                   +
Sbjct:   105 MLITCRGMIGFMNGNVGIIRTMVAEMVQDKELQPRAFSIMPMVWTIGSIFGPSFGGSLAR 164

Query:   130 PAEKYPNLFSSESLFGKFPYFLPCLCISLF-AFGVTIAAFWLPETLH 175
             P EKYP +F     F ++P+ LP +    F   G++    +L ETLH
Sbjct:   165 PTEKYPEIFGHSWFFKEYPFVLPNMVAGFFFIIGISTGFLFLHETLH 211

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2159108 AT5G13940 [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 7.1e-24, Sum P(2) = 7.1e-24
 Identities = 54/122 (44%), Positives = 75/122 (61%)

Query:   212 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLL 271
             LL NWPLMSSIIVYC+  LH+ AYSEIF+LWANSP++ GGL                 + 
Sbjct:   159 LLGNWPLMSSIIVYCILCLHETAYSEIFALWANSPRRYGGLG----------------IF 202

Query:   272 VFQLSLYPFLERILGPIMVARIA-GVLTIPLLTS-YPYIAMLSGFGLAFLLNCASVVKNL 329
              FQ+ +YP  +R+LGP++V   A  +++    TS    IA LS   L+ +L+C S++ N+
Sbjct:   203 FFQVFVYPLAKRLLGPVLVTHFAEALMSDDTNTSGLSIIANLSNLSLSLMLSCPSILLNV 262

Query:   330 LS 331
             LS
Sbjct:   263 LS 264

GO:0004177 "aminopeptidase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

CGD|CAL0004954 orf19.3432 [Candida albicans (taxid:5476)]

 Score = 211 (79.3 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
 Identities = 44/110 (40%), Positives = 68/110 (61%)

Query:     1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
             MI+DF IA +EEDI  Y+GY+ SSF   + L ++ WG ++++ GRK ++I+G     I  
Sbjct:    43 MIRDFHIAIKEEDISQYSGYIASSFAICQFLFAIHWGTMSEKLGRKLILIIGLLGTSISL 102

Query:    61 TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREE-HQALGLSTV 109
              LFG + N++ A++ R L G LNG +  ++    EI  E+ HQ L  ST+
Sbjct:   103 LLFGFARNYYWALIARCLAGVLNGNVAVLRTMIGEIAVEKRHQPLAFSTM 152

GO:0015238 "drug transmembrane transporter activity" evidence=ISS

GO:0015893 "drug transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

CGD|CAL0002781 orf19.4550 [Candida albicans (taxid:5476)]

 Score = 230 (86.0 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
 Identities = 44/110 (40%), Positives = 65/110 (59%)

Query:     1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 60
             MI+DF IA    DI  Y+GY+ +SF F +    V WG  +D+YGRK +++MG     +  
Sbjct:    46 MIRDFNIAPHSTDIAKYSGYLSASFAFCQFFCCVQWGKASDKYGRKKILLMGLLGTAVSM 105

Query:    61 TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIF-REEHQALGLSTV 109
              +FG S NFW+AV  R L+G LNG +  ++    EI   + HQ++  ST+
Sbjct:   106 IIFGFSPNFWVAVFARSLMGCLNGNIAVLRTAIGEIATHKNHQSIAFSTL 155

GO:0015238 "drug transmembrane transporter activity" evidence=ISS

GO:0015893 "drug transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94BZ1	ZIFL1_ARATH	No assigned EC number	0.6928	0.9928	0.8723	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00033971001	SubName- Full=Chromosome undetermined scaffold_71, whole genome shotgun sequence; (488 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036173001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (439 aa)			•						0.459
	GSVIVG00015514001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (456 aa)			•						0.434

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	420
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	5e-19
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-14
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	3e-11
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	3e-11
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	3e-10
PRK09874	408	PRK09874, PRK09874, drug efflux system protein Mdt	2e-09
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	5e-08
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-06
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	3e-06
PRK11102	377	PRK11102, PRK11102, bicyclomycin/multidrug efflux	4e-06
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	6e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-05
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	1e-04
PRK10473	392	PRK10473, PRK10473, multidrug efflux system protei	1e-04
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	5e-04
PRK11043	401	PRK11043, PRK11043, putative transporter; Provisio	0.001
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	0.001
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	0.002

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 87.5 bits (217), Expect = 5e-19
 Identities = 76/356 (21%), Positives = 132/356 (37%), Gaps = 42/356 (11%)

Query: 16  SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLT 75
           +  G + ++F  G AL     G ++DR+GR+ V+++G     +   L   + + W+ ++ 
Sbjct: 32  TEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVL 91

Query: 76  RFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 134
           R L G   G L P   A   + F  E +   L  +S  +G+G  +GP LGG LA      
Sbjct: 92  RVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLA------ 145

Query: 135 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESA 194
                  SLFG    FL    ++L A  +       P    +                  
Sbjct: 146 -------SLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRP---------------- 182

Query: 195 SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY 254
               +E         K LL++  L   + +              F+L    P     L  
Sbjct: 183 -KPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFA-------FFALLTYLPLYQEVLGL 234

Query: 255 STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF 314
           S  + G +L + G    + +L L    +R+ G      +A +L I        +++    
Sbjct: 235 SALLAGLLLGLAGLLGAIGRLLLGRLSDRL-GRRRRLLLALLLLILAALGLALLSLTESS 293

Query: 315 GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP 370
               +   A ++    +  +   L  L +    +++RG A+G+  T  SL  A GP
Sbjct: 294 LWLLV---ALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 15  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 74
            S AG + S+F  G AL S+  G ++DR+GR+ V+++G     + + L   + + W+ ++
Sbjct: 33  ASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLV 92

Query: 75  TRFLLGSLNGLLGPIK-AYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 129
            RFLLG   G L P   A   E F  + +   L   S  +G+G ++GP LGG LA+
Sbjct: 93  GRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 16/152 (10%)

Query: 23  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 82
           + +  G+ + S   GL+ DR+GRKPV+++G    V+   +F LS N  + ++ RFL G  
Sbjct: 5   AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG 64

Query: 83  NGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE 141
                    A   +I+  E + + L  +S    +G ++GP LGG LAQ            
Sbjct: 65  AAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ-------FLGWR 117

Query: 142 SLFGKFPYFLPCLCISLFAFGVTIAAFWLPET 173
           + F     FL  L ++ F     + AF LPET
Sbjct: 118 APF----LFLAILALAAFI----LLAFLLPET 141

Length = 141

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 1/111 (0%)

Query: 18  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 77
            G++ S+ + G A  ++F+G +ADR GR+ V++       +F  L  L+ N    ++ RF
Sbjct: 54  LGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRF 113

Query: 78  LLG-SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 127
           L G  L GL+  + A   E   +  +   +  +   + IG  +G  L G+L
Sbjct: 114 LAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 61.1 bits (149), Expect = 3e-10
 Identities = 74/409 (18%), Positives = 133/409 (32%), Gaps = 74/409 (18%)

Query: 18  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 77
           AG + +++  G AL +    L+  R  R+ +++   A  ++ N L  L+ +F + +L R 
Sbjct: 50  AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARA 109

Query: 78  LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN 136
           L G  +G+   I  A A  +     +   L+ V T   +  ++G  LG FL Q       
Sbjct: 110 LAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ------- 162

Query: 137 LFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASA 196
                 LFG    FL    ++L A    +    LP                        +
Sbjct: 163 ------LFGWRATFLAIAVLALLAL--LLLWKLLPP-----------------------S 191

Query: 197 EVKEEEGREATPKKSLLKNWPLMSSIIVY-CVFSLHDMAYSEIFSLWANSPKKLGGLNYS 255
           E+             LL+   ++  ++      + H   Y+ I       P       +S
Sbjct: 192 EISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYI------RPFLESVAGFS 245

Query: 256 TQMVGEVLAITGF-----SLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM 310
              V  VL   G      +LL  +L+      R L   ++     +L +    + P +A+
Sbjct: 246 VSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALAL 304

Query: 311 LSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP 370
              F   F  + A                  +   +  D    A  + +   +L  A G 
Sbjct: 305 ALLFLWGFAFSPALQG------------LQTRLARLAPDAADLAGSLNVAAFNLGIALGA 352

Query: 371 AGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH 419
           A GG +              G     +V   +  + +L+        R 
Sbjct: 353 ALGGLVLDAL----------GYAATGWVGAALLLLALLLALLSARKDRR 391

Length = 394

>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 8/144 (5%)

Query: 17  YAGYVGS-SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLT 75
           ++G V S +F+F  A+ S FWG +ADR GRK +++     + I   L GL+ N W  ++ 
Sbjct: 55  WSGLVFSITFLFS-AIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLIL 113

Query: 76  RFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP 135
           R LLG L G +    A              L T+ST    G ++GP  GG LA      P
Sbjct: 114 RALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRP 173

Query: 136 NLFSSESLFGKFPYFLPCLCISLF 159
             F + S+         C  ++LF
Sbjct: 174 VFFITASV------LFLCFLVTLF 191

Length = 408

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 23  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG 80
           S F  G  L S  +G ++DR+GRK V+++ T    +   L   S N+ + ++ R L+G
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG 191

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 16  SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAV 73
             +G + S F  G  + S+F G + DR+GRK  +++G    VI   L G +   +F+M +
Sbjct: 46  VLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLI 105

Query: 74  LTRFLLG 80
           + R ++G
Sbjct: 106 VGRVIVG 112

Length = 449

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 4/118 (3%)

Query: 18  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 77
             ++ ++   GR      +GL+AD++GRKP+++    +  +   L GL+    M  L+RF
Sbjct: 55  GAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRF 114

Query: 78  LLG-SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 134
           ++G  + G       YA E + +  ++   + + + +GIG II      F+   AE Y
Sbjct: 115 IVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAY---FMPSFAEAY 169

Length = 426

>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 26/162 (16%)

Query: 23  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 82
           S+++ G A+  +F+G +AD +GRKPVI+ GT    +      L+      +  RF    L
Sbjct: 33  SAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRF----L 88

Query: 83  NGLLGP-----IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL 137
           +GL        I A   ++F +E  +  +S V+    I  ++ P +GG+L          
Sbjct: 89  HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL-------VW 141

Query: 138 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHN 178
           FS  ++F           ++L A       F+  PETL +  
Sbjct: 142 FSWHAIF---------WVLALAAILAAALVFFFIPETLPKER 174

Length = 377

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 48.4 bits (116), Expect = 6e-06
 Identities = 91/412 (22%), Positives = 151/412 (36%), Gaps = 97/412 (23%)

Query: 31  LTSVFWGLVADRYGRKPVI-IMGTASVVI--FNTLFGLSVNFWMAVLTRFLLGSLNGLLG 87
           L S   G +AD++ +  VI I+    V +     L      FW+A    FLLG+ + +  
Sbjct: 62  LLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYS 121

Query: 88  PIKA-YACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK 146
           P K     E+  +E+ +     +     + ++ G AL  FL +         ++ S    
Sbjct: 122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE--SVNG---NTPSEILG 176

Query: 147 FPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA 206
                  + +++   G  I A+ LP+                     A+A    ++ +  
Sbjct: 177 RIAPAGLVLLAVAVLG-LIFAYRLPKV-------------------PAAAPEVFDKKKYL 216

Query: 207 TPK------KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSP---KKLGGLNYSTQ 257
            PK      K L  +  L  +II    F       S++    AN P   K++ GL+ +T 
Sbjct: 217 FPKLLWRNLKLLRSDRVLWLAIIGLSYF----WFISQL--AQANFPAYAKEVLGLD-NTF 269

Query: 258 MVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG----VLTIPL----LTSYPYIA 309
            V  +LA +   +              +G ++  R++G    +  +PL    L       
Sbjct: 270 QVQYLLAASAIGI-------------GIGSLLAGRLSGRHIELGLVPLGALGLA------ 310

Query: 310 MLSGFGLAFLLNCASVVKNLLSVSIITGLFI------LQNRAVDQDQRG----AANGIAM 359
            LS F L    + ASV+          GLFI      +Q RA  + + G    A N +  
Sbjct: 311 -LSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRA-PEKELGKVLAANNFLQN 368

Query: 360 TGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 411
            GM LF A        LFS     L          +F+++ +V  IG L T 
Sbjct: 369 VGMLLFLAL-----TTLFSGLG--LSP------AGLFYLIALVTLIGTLYTL 407

Length = 1146

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 2/114 (1%)

Query: 18  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM-GTASVVIFNTLFGLSVNFWMAVLTR 76
           AG + S F  G  L ++  GL++DR GR+ ++++ G     +   L  L+ +  + ++  
Sbjct: 213 AGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVAL 272

Query: 77  FLLGSLNGLL-GPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 129
            LLG   G     +   A E+   E +       +T   +G  +GP L G L  
Sbjct: 273 LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 26/121 (21%), Positives = 41/121 (33%), Gaps = 6/121 (4%)

Query: 15  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI-----IMGTASVVIFNTLFGLSVNF 69
            S       + M    + S   G +ADRY RK V+     I      V+        +N 
Sbjct: 33  ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNI 92

Query: 70  WMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 128
           W   +   +L        P  +A   ++  EE      S       +  I+GP +GG + 
Sbjct: 93  WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY 152

Query: 129 Q 129
            
Sbjct: 153 A 153

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 23  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS 81
           S ++ G A   +F G +ADR GRKPV I G A  +I + L  L+    + +  RFL G 
Sbjct: 45  SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGI 103

Length = 392

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 16  SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV----IIMGTASVVIFNTLFGLSVNFWM 71
           S A   G+ F FG  + S+ +G +ADR G +      ++    +V++ +TLF  ++   +
Sbjct: 285 SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLL 344

Query: 72  AVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIG---LIIGPALGGFLA 128
             +  F +   NG    + A     +    +A G   V  A GIG    IIGP L G+L 
Sbjct: 345 GAIAGFFV---NGGQSGLYALMALFYPTAIRATG---VGWAIGIGRLGAIIGPILAGYLL 398

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 3/45 (6%)

Query: 11 EEDIGSYAGYVGSS---FMFGRALTSVFWGLVADRYGRKPVIIMG 52
          + D+ + A  V +S   F+ G AL  + WG ++DRYGRKPV++ G
Sbjct: 33 QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAG 77

Length = 401

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 19  GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 78
           G+  S+ + G    ++  G +ADR GRK ++I+  A   +F+     + +F   ++ R L
Sbjct: 53  GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL 112

Query: 79  LG 80
            G
Sbjct: 113 TG 114

Length = 406

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 8/125 (6%)

Query: 5   FQIAKREEDI---GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP--VIIMGTASVVIF 59
           F +   E+D+    S  G +G     G  + + FWG +AD+ GRK   +I +       F
Sbjct: 188 FVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAF 247

Query: 60  NTLFGLSVNFWMAVLTRFLLG-SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 118
            + F     F++    R L G  + G +  + +Y  E   +E +   LS +   W IG I
Sbjct: 248 FSSFVQGYGFFL--FCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGI 305

Query: 119 IGPAL 123
              A+
Sbjct: 306 YAAAM 310

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	420
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
KOG2615	451	consensus Permease of the major facilitator superf	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
PRK03633	381	putative MFS family transporter protein; Provision	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	100.0
PRK10504	471	putative transporter; Provisional	100.0
PRK03699	394	putative transporter; Provisional	100.0
PRK12382	392	putative transporter; Provisional	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
PRK10054	395	putative transporter; Provisional	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK11043	401	putative transporter; Provisional	100.0
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	100.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	100.0
TIGR00895	398	2A0115 benzoate transport.	99.98
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.98
PRK15011	393	sugar efflux transporter B; Provisional	99.98
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.97
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.97
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.97
PRK11010	491	ampG muropeptide transporter; Validated	99.97
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.97
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.97
PRK11902	402	ampG muropeptide transporter; Reviewed	99.97
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.97
KOG2533	495	consensus Permease of the major facilitator superf	99.97
PRK09528	420	lacY galactoside permease; Reviewed	99.97
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.97
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.97
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.97
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.96
KOG0254	513	consensus Predicted transporter (major facilitator	99.96
TIGR00901	356	2A0125 AmpG-related permease.	99.96
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.96
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.96
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.95
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.95
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.95
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.95
TIGR00805	633	oat sodium-independent organic anion transporter.	99.95
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.95
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.95
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.94
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.94
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.94
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.93
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.92
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.92
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.92
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.92
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.9
PRK09669	444	putative symporter YagG; Provisional	99.9
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.9
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.89
PTZ00207	591	hypothetical protein; Provisional	99.89
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.88
PRK10429	473	melibiose:sodium symporter; Provisional	99.88
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.88
PF13347	428	MFS_2: MFS/sugar transport protein	99.88
PRK09848	448	glucuronide transporter; Provisional	99.87
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.86
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.86
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.83
COG2211	467	MelB Na+/melibiose symporter and related transport	99.83
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.81
PRK11462	460	putative transporter; Provisional	99.81
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.8
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.73
KOG2563	480	consensus Permease of the major facilitator superf	99.73
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.61
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.6
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.57
KOG3626	735	consensus Organic anion transporter [Secondary met	99.55
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.55
PRK10642	490	proline/glycine betaine transporter; Provisional	99.55
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.53
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.51
PRK10054	395	putative transporter; Provisional	99.5
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.45
PRK09528	420	lacY galactoside permease; Reviewed	99.45
PRK15011	393	sugar efflux transporter B; Provisional	99.45
PRK05122	399	major facilitator superfamily transporter; Provisi	99.44
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.44
PRK10489	417	enterobactin exporter EntS; Provisional	99.44
PRK11663	434	regulatory protein UhpC; Provisional	99.42
TIGR00900	365	2A0121 H+ Antiporter protein.	99.42
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.42
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.39
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.39
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.39
PRK03545	390	putative arabinose transporter; Provisional	99.39
PRK10091	382	MFS transport protein AraJ; Provisional	99.38
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.38
PRK03893	496	putative sialic acid transporter; Provisional	99.38
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.38
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.38
PLN00028	476	nitrate transmembrane transporter; Provisional	99.38
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.37
PRK09874	408	drug efflux system protein MdtG; Provisional	99.37
PRK10504	471	putative transporter; Provisional	99.36
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.36
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.36
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.36
PRK12382	392	putative transporter; Provisional	99.35
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.33
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.33
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.32
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.31
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.31
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.3
TIGR00895	398	2A0115 benzoate transport.	99.3
PRK03633	381	putative MFS family transporter protein; Provision	99.3
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.28
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.28
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.28
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.27
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.27
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.27
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.27
TIGR00891	405	2A0112 putative sialic acid transporter.	99.26
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.26
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.26
PRK11043	401	putative transporter; Provisional	99.26
PRK03699	394	putative transporter; Provisional	99.26
TIGR00893	399	2A0114 d-galactonate transporter.	99.26
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.26
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.26
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.25
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.25
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.24
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.24
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.24
PRK09705	393	cynX putative cyanate transporter; Provisional	99.24
PRK09952	438	shikimate transporter; Provisional	99.23
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.21
PRK12307	426	putative sialic acid transporter; Provisional	99.21
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.2
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.2
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.19
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.18
PRK11010	491	ampG muropeptide transporter; Validated	99.17
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.17
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.17
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.17
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.16
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.15
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.15
TIGR00898	505	2A0119 cation transport protein.	99.11
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.1
PRK10133	438	L-fucose transporter; Provisional	99.1
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.09
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.08
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.08
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.08
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.08
PRK15075	434	citrate-proton symporter; Provisional	99.07
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.06
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.05
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.03
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.02
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.02
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.01
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.98
KOG2532	466	consensus Permease of the major facilitator superf	98.98
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.98
PRK11902	402	ampG muropeptide transporter; Reviewed	98.98
KOG3762	618	consensus Predicted transporter [General function	98.98
TIGR00901	356	2A0125 AmpG-related permease.	98.98
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.94
PRK09848	448	glucuronide transporter; Provisional	98.93
TIGR00805	633	oat sodium-independent organic anion transporter.	98.92
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.91
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.9
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.9
PTZ00207	591	hypothetical protein; Provisional	98.9
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.9
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.89
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.88
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.87
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.84
KOG0569	485	consensus Permease of the major facilitator superf	98.83
KOG3810	433	consensus Micronutrient transporters (folate trans	98.82
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.82
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.82
KOG2615	451	consensus Permease of the major facilitator superf	98.82
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.8
PRK09669	444	putative symporter YagG; Provisional	98.77
PRK10429	473	melibiose:sodium symporter; Provisional	98.77
KOG0637	498	consensus Sucrose transporter and related proteins	98.75
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.74
COG0477	338	ProP Permeases of the major facilitator superfamil	98.71
KOG2533	495	consensus Permease of the major facilitator superf	98.69
KOG0254	513	consensus Predicted transporter (major facilitator	98.64
PRK11462	460	putative transporter; Provisional	98.62
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.61
KOG3762	618	consensus Predicted transporter [General function	98.57
PF13347	428	MFS_2: MFS/sugar transport protein	98.55
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.44
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.42
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.4
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.39
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.38
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.36
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.32
COG2211	467	MelB Na+/melibiose symporter and related transport	98.31
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.21
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.17
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.17
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	98.15
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	98.11
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.11
KOG2563	480	consensus Permease of the major facilitator superf	98.08
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.05
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.05
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.04
COG3202	509	ATP/ADP translocase [Energy production and convers	97.94
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.91
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.85
KOG3880	409	consensus Predicted small molecule transporter inv	97.84
PF12832	77	MFS_1_like: MFS_1 like family	97.78
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.72
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.44
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.4
PF12832	77	MFS_1_like: MFS_1 like family	97.37
PRK03612	521	spermidine synthase; Provisional	97.29
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.17
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.98
COG0477	338	ProP Permeases of the major facilitator superfamil	96.85
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.8
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.51
KOG3626	735	consensus Organic anion transporter [Secondary met	96.39
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.18
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	96.12
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.11
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.56
PRK03612	521	spermidine synthase; Provisional	95.53
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.43
KOG3097	390	consensus Predicted membrane protein [Function unk	94.58
KOG0637	498	consensus Sucrose transporter and related proteins	93.15
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	92.49
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	91.54
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	91.48
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	90.03
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	89.22
KOG3880	409	consensus Predicted small molecule transporter inv	89.13
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	89.08
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	87.1
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	80.03

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.2e-37  Score=271.90  Aligned_cols=344  Identities=21%  Similarity=0.244  Sum_probs=281.2

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG   80 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G   80 (420)
                      |++|+|+|..+      .|+..|+|.+++.+++|+...+.||+.||++++..+.++.++++++++++||+.++++|++.|
T Consensus        39 iA~dl~vs~~~------aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g  112 (394)
T COG2814          39 IAADLGVSEGA------AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAG  112 (394)
T ss_pred             HHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            46899999999      999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHH
Q 014682           81 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF  159 (420)
Q Consensus        81 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  159 (420)
                      +..|.+.+. .++..|..|++||++++++...+.+++.++|.+++.++.+       .+|||..|         ...+..
T Consensus       113 ~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~-------~~GWR~~F---------~~ia~l  176 (394)
T COG2814         113 LAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ-------LFGWRATF---------LAIAVL  176 (394)
T ss_pred             HHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH-------HhhHHHHH---------HHHHHH
Confidence            999999998 9999999999999999999999999999999999999999       77777666         566666


Q ss_pred             HHHH-HHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHH
Q 014682          160 AFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEI  238 (420)
Q Consensus       160 ~~~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (420)
                      +++. +..+..+|  |++.++++                     +.+..+..+++|+|+++...+...+....++...++
T Consensus       177 ~ll~~~~~~~~lP--~~~~~~~~---------------------~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftY  233 (394)
T COG2814         177 ALLALLLLWKLLP--PSEISGSL---------------------PGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTY  233 (394)
T ss_pred             HHHHHHHHHHhCC--CccCCCCC---------------------CcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHh
Confidence            6554 45677788  22211111                     011223567899999999999988888888888777


Q ss_pred             HHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 014682          239 FSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAF  318 (420)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (420)
                      ...++.+.     .|++....+..+..++++.++++. +++++.|| +.++.+.....+..+..+.+.+.....    +.
T Consensus       234 i~P~L~~v-----~g~s~~~vs~~Ll~~Gv~~~~Gn~-~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~----~~  302 (394)
T COG2814         234 IRPFLESV-----AGFSVSAVSLVLLAFGIAGFIGNL-LGGRLADR-GPRRALIAALLLLALALLALTFTGASP----AL  302 (394)
T ss_pred             HHHHHHHc-----cCCCHhHHHHHHHHHHHHHHHHHH-HHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchH----HH
Confidence            77777666     899999999999999999999998 88888888 888888777777766666655543221    22


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHH
Q 014682          319 LLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFV  398 (420)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~  398 (420)
                       ..+..++.++.............++ ..||.++.+.+++....++|..+|..++|.++|+.          |+....++
T Consensus       303 -~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~----------g~~~~~~~  370 (394)
T COG2814         303 -ALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL----------GYAATGWV  370 (394)
T ss_pred             -HHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------chHHHHHH
Confidence             2222222333333333344444444 44699999999999999999999999999999997          89999999


Q ss_pred             HHHHHHHHHHHHhh
Q 014682          399 LNVVEAIGVLMTFK  412 (420)
Q Consensus       399 ~~~~~~~~~~~~~~  412 (420)
                      .+.+.+++.++.+.
T Consensus       371 ~a~l~~~a~~~~~~  384 (394)
T COG2814         371 GAALLLLALLLALL  384 (394)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998887765

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=2.9e-36  Score=273.31  Aligned_cols=344  Identities=15%  Similarity=0.083  Sum_probs=244.0

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG   80 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G   80 (420)
                      +++|+|+|++|      .|++.+.+.+++.+++++.|+++||+|||+++..+......+......++|++.+++.|+++|
T Consensus        17 i~~~~~~s~~~------~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G   90 (368)
T TIGR00903        17 VAEDIDVSKEE------LGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAA   90 (368)
T ss_pred             HHHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            46899999999      999999999999999999999999999999877665555554433333479999999999999


Q ss_pred             hhccchhhhHhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           81 SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        81 ~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      ++.+...+....++|++|+|+|++++++...+..+|.++++++++.+.+       .+|||..|         ...+++.
T Consensus        91 ~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~-------~~gWr~~f---------~~~~~l~  154 (368)
T TIGR00903        91 LGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT-------AGGLQLLI---------IPIAAVA  154 (368)
T ss_pred             hHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccchHHHH---------HHHHHHH
Confidence            9988755556677999999999999999999999999999999999987       55666554         5655555


Q ss_pred             HH-HHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014682          161 FG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       161 ~~-~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      ++ .++.++++||+|++++++.   + . +       +       ..++.++++|||.+|...+..++.........++.
T Consensus       155 ~~~~~~~~~~lp~~p~~~~~~~---~-~-~-------~-------~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wl  215 (368)
T TIGR00903       155 AAGIILVLAALPALPFQAAEGF---G-F-K-------D-------AVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWL  215 (368)
T ss_pred             HHHHHHHHHHcCCCCCCCCCCc---c-h-H-------H-------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44 4456678899876532110   0 0 0       0       00135678999999999999999888888888999


Q ss_pred             HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 014682          240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV-ARIAGVLTIPLLTSYPYIAMLSGFGLAF  318 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (420)
                      |.|+.+      .|++.. .+.......+.+.++......+.+|+ ++|+. ......+..+....+....   .  ...
T Consensus       216 p~~L~~------~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~-~~r~~~~~~~~~~~a~~~~~~~~~~---~--~~~  282 (368)
T TIGR00903       216 EAALRP------AGLEDI-AGDAVALAILAGLIGVAVIPDRVARA-GLRSIYIRAAALLIAAFFLALAFEL---N--RLA  282 (368)
T ss_pred             HHHHHH------CCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHcc---c--cHH
Confidence            999854      356654 56666555665655544344444433 32333 2223332222222222111   1  111


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHH
Q 014682          319 LLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFV  398 (420)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~  398 (420)
                       ......+.+++.....+..+.+.+|.+|++.||++.|+.+...++++..+|.+.+.+..            +....|.+
T Consensus       283 -~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~------------~~~~~f~~  349 (368)
T TIGR00903       283 -LFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS------------SAEAYFTF  349 (368)
T ss_pred             -HHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc------------CHHHHHHH
Confidence             12222333344555556677899999999999999999999999999999999988772            35567777


Q ss_pred             HHHHHHHHHHHHh
Q 014682          399 LNVVEAIGVLMTF  411 (420)
Q Consensus       399 ~~~~~~~~~~~~~  411 (420)
                      .+...+++.+...
T Consensus       350 ~~~~~~i~~~~~~  362 (368)
T TIGR00903       350 LAILITIAFAIAL  362 (368)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777766654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=2.7e-36  Score=279.67  Aligned_cols=369  Identities=17%  Similarity=0.139  Sum_probs=269.2

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      ++++|.++.+      .+++.+++.++..+++++.|+++||+|||+++..+.++..++..++++++|++.+++.|+++|+
T Consensus        21 ~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~   94 (399)
T TIGR00893        21 QEDLGLSAAQ------YGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGA   94 (399)
T ss_pred             HHhhCCChhh------HHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            5788999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...+. ..++.|++|+|+|++++++.....++|..++|.+++.+.+       ..+||+.         +...++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~~~~~---------~~~~~~~~  158 (399)
T TIGR00893        95 AEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI-------HFSWQWA---------FIIEGVLG  158 (399)
T ss_pred             HHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH-------hCCchHH---------HHHHHHHH
Confidence            99988887 9999999999999999999999999999999999999887       4455544         35555555


Q ss_pred             HHHHH-HHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014682          161 FGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       161 ~~~~~-~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      ++..+ ..+..||++++.+..++++++...+....+.+.+++++++....++.+|+|+++...+..++..........+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (399)
T TIGR00893       159 IIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWF  238 (399)
T ss_pred             HHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            54333 34455665543222111111100000000001111222334456788899999988888888887777788888


Q ss_pred             HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH--HHHHHHHHHHH--HHHHHHHHHHhhhhH
Q 014682          240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM--VARIAGVLTIP--LLTSYPYIAMLSGFG  315 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~  315 (420)
                      |.|..+.     .|.++.+.+.......+..+++.+ ..+++.||.++|+  ...........  ............. .
T Consensus       239 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  311 (399)
T TIGR00893       239 PTYLVQE-----RGLSILEAGFMASLPGIVGFIGMI-LGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVN-I  311 (399)
T ss_pred             HHHHHHH-----hcccHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccch-h
Confidence            8887665     688899999999998999988887 7777888878775  11111111111  1111111111011 1


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCC-chH
Q 014682          316 LAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPG-SQM  394 (420)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g-~~~  394 (420)
                      .+ .. ......+.+..+..+....+.+|..|+++|+++.|+.+...++|+.++|.+.|.+.|..          + +..
T Consensus       312 ~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~----------g~~~~  379 (399)
T TIGR00893       312 PY-AA-LALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT----------GSFAG  379 (399)
T ss_pred             HH-HH-HHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC----------CchhH
Confidence            11 11 12222223334478888999999999999999999999999999999999999999987          5 888


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 014682          395 VFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       395 ~f~~~~~~~~~~~~~~~  411 (420)
                      .|.+.+++.+++.+..+
T Consensus       380 ~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       380 ALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888888877766554

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=1.1e-35  Score=277.45  Aligned_cols=366  Identities=15%  Similarity=0.141  Sum_probs=258.4

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      .+++|.|+++      .|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.+++++++|++.+++.|++.|+
T Consensus        50 ~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~  123 (434)
T PRK11663         50 LADLGLSRSD------IGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAF  123 (434)
T ss_pred             HHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            5789999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.|...+. .+++.|++|+|+|++++++.+.+.++|.+++|.+++.+.+       .+|||+.|         .+.++..
T Consensus       124 ~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~gw~~~f---------~~~~i~~  187 (434)
T PRK11663        124 FQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL-------HYGWRYGM---------MIAGIIA  187 (434)
T ss_pred             HHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cccHHHHH---------HHHHHHH
Confidence            98887776 8999999999999999999999999999999999999987       55665544         5555544


Q ss_pred             HH-HHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCc-h-hhhccchhHHHHHHHHHHHHhhhhhHHH
Q 014682          161 FG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-K-KSLLKNWPLMSSIIVYCVFSLHDMAYSE  237 (420)
Q Consensus       161 ~~-~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (420)
                      ++ .++..+.+||+|++...++.++.+. +..+.. ++ ++.++.+... . ...+|++.++...+..++..........
T Consensus       188 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (434)
T PRK11663        188 IVVGLFLCWRLRDKPQAMGLPSVGEWRH-DALELA-QQ-QEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAIND  264 (434)
T ss_pred             HHHHHHHHHHcCCCHhhcCCCCcccccc-cccccc-hh-ccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            43 3344556787765432111110000 000000 00 0000001111 1 2366788888877776666666666677


Q ss_pred             HHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--chH-HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014682          238 IFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL--GPI-MVARIAGVLTIPLLTSYPYIAMLSGF  314 (420)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (420)
                      +.|.|+.+.     +|++..+.+...+...++..++++ ..+++.||+  ++| ................+.....  . 
T Consensus       265 ~~p~~l~~~-----~g~s~~~a~~~~~~~~~~~~~g~~-~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~-  335 (434)
T PRK11663        265 WGNLYMSET-----LGVDLVTANSAVSMFELGGFIGAL-VAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPF--A-  335 (434)
T ss_pred             HHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHHH-HHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccc--c-
Confidence            888887554     789999999999999999999988 777888876  222 2222211111111111111111  1 


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchH
Q 014682          315 GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQM  394 (420)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~  394 (420)
                      .... .....+..+++.............|..|+++|+++.|+.+...++|++++|.+.|.+.|..          |++.
T Consensus       336 ~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~----------g~~~  404 (434)
T PRK11663        336 SYVM-QAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIW----------HWTG  404 (434)
T ss_pred             cHHH-HHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhc----------ccHH
Confidence            1111 1111222222222222334456678899999999999999999999999999999999987          8999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 014682          395 VFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       395 ~f~~~~~~~~~~~~~~~~  412 (420)
                      .|.+.+++.+++.+..+.
T Consensus       405 ~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        405 FFVVISIAAGISALLLLP  422 (434)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999998888887766654

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=1.3e-35  Score=273.82  Aligned_cols=342  Identities=16%  Similarity=0.148  Sum_probs=256.4

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG   80 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G   80 (420)
                      +++|+|.|+++      .|++.+.+.+++.+++++.|+++||+|||+++..+..+..++++.+++++|++.+++.|+++|
T Consensus        35 l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G  108 (390)
T PRK03545         35 IAQSFHMQTAQ------VGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIA  108 (390)
T ss_pred             HHhHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            35789999999      999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHH
Q 014682           81 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF  159 (420)
Q Consensus        81 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  159 (420)
                      ++.+...+. .+++.|++|+|+|++++++...+.++|..++|++++.+.+       .+|||+.|         ...++.
T Consensus       109 ~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~-------~~gw~~~f---------~~~~~~  172 (390)
T PRK03545        109 FAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ-------YLGWRTTF---------LAIGGG  172 (390)
T ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH-------HhcHHHHH---------HHHHHH
Confidence            998888787 8999999999999999999999999999999999999987       56666554         555555


Q ss_pred             HHHHH-HHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHH
Q 014682          160 AFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEI  238 (420)
Q Consensus       160 ~~~~~-~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (420)
                      .++.. .....+||++++++      +.                   .++.++.+|+|.++......++..........+
T Consensus       173 ~~l~~~~~~~~~~~~~~~~~------~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (390)
T PRK03545        173 ALITLLLLIKLLPLLPSEHS------GS-------------------LKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSY  227 (390)
T ss_pred             HHHHHHHHHHhCCCCCCCCc------ch-------------------HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            54433 33445565432110      00                   012356788888776555544444443444445


Q ss_pred             HHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 014682          239 FSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAF  318 (420)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (420)
                      .+.+..+.     .|+++.+.+......+++.++++. ..+++.||.++|... .+..+............  ++   ..
T Consensus       228 ~~~~l~~~-----~g~s~~~~~~~~~~~~~~~~~g~~-~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~--~~---~~  295 (390)
T PRK03545        228 IEPFVQQV-----AGLSENFATLLLLLFGGAGIIGSV-LFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAA--NS---EW  295 (390)
T ss_pred             HHHHHHHh-----cCCCccHHHHHHHHHHHHHHHHHH-HHHHHhhccchhHHH-HHHHHHHHHHHHHHHHh--ch---HH
Confidence            55555433     688899999999998999999988 667788887876543 33333333332221111  11   11


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHH
Q 014682          319 LLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFV  398 (420)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~  398 (420)
                      .+.....+.+.......+.......+..| +++++++|+.+...++|..+||.+.|.++|..          |++..|..
T Consensus       296 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~----------g~~~~~~~  364 (390)
T PRK03545        296 HLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL----------GLSSIGYV  364 (390)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------ChhHHHHH
Confidence            22233333444444445556667777655 78999999999999999999999999999998          89999999


Q ss_pred             HHHHHHHHHHHHhh
Q 014682          399 LNVVEAIGVLMTFK  412 (420)
Q Consensus       399 ~~~~~~~~~~~~~~  412 (420)
                      .+.+.+++.++.+.
T Consensus       365 ~~~~~~~~~~~~~~  378 (390)
T PRK03545        365 GAALALAALVWSIL  378 (390)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99888888777665

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=5.3e-36  Score=282.26  Aligned_cols=381  Identities=14%  Similarity=0.058  Sum_probs=258.4

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhh-----hhhHHHHHHH
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL-----SVNFWMAVLT   75 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~   75 (420)
                      +++|+|+++.+      .|++.+++.+++.+++++.|+++||+|||+++..+.+++++..+..++     ++|++.+++.
T Consensus        55 i~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  128 (467)
T PRK09556         55 MISTYGLSTTE------LGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIAL  128 (467)
T ss_pred             HHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            36789999999      999999999999999999999999999999998888888777766655     6899999999


Q ss_pred             HHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHH
Q 014682           76 RFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL  154 (420)
Q Consensus        76 r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~  154 (420)
                      |+++|++.+...|. .++++|++|+++|++++++...+.++|.+++++++.++.+...    ..+||         ..+.
T Consensus       129 r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~----~~~~~---------~~f~  195 (467)
T PRK09556        129 WALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF----DGHVI---------GMFI  195 (467)
T ss_pred             HHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc----cCcch---------hHHH
Confidence            99999999888887 8999999999999999999999999999999999877665100    01243         3334


Q ss_pred             HHHHHHHHH-HHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCC-C-chhhhccchhHHHHHHHHHHHHhh
Q 014682          155 CISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA-T-PKKSLLKNWPLMSSIIVYCVFSLH  231 (420)
Q Consensus       155 ~~~~~~~~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  231 (420)
                      ..++..++. ++.+++.+|+|++.+..++++ ...+...++ ++..++++... . ..++.+|+|.+|...+..++....
T Consensus       196 ~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  273 (467)
T PRK09556        196 FPSIIALIIGFIGLRYGSDSPEELGWGKAEE-IFGEPISEE-DKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIV  273 (467)
T ss_pred             HHHHHHHHHHHHHHHhCCCChhhcCCCChhh-cccCccchh-hhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence            545544443 334445566554322111111 000000000 00000000000 1 122378999999888888777777


Q ss_pred             hhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHh
Q 014682          232 DMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAML  311 (420)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (420)
                      ......+.|.|+.+.     +|++..+++.......++.+++.+ ..+++.||+++|+.................. ...
T Consensus       274 ~~~~~~~~p~yl~~~-----~g~s~~~a~~~~~~~~~~~~ig~~-~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~-~~~  346 (467)
T PRK09556        274 RIGIDNWSPVYAFQE-----LGFSKEDAINTFTLFEIGALVGSL-LWGWLSDLANGRRALVACIALALIIFTLGVY-QHA  346 (467)
T ss_pred             HHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCchHHHHHHHHHHHHHHHHH-Hhc
Confidence            667778899888665     789999999999888888888887 8888999989887665544333332222111 111


Q ss_pred             hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHH-HHHHhhhhhhHHHHhhhhcc-C-CCC
Q 014682          312 SGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL-FKAAGPAGGGALFSWAQKRL-D-ASF  388 (420)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~g~~~~g~l~~~~~~~~-~-~~~  388 (420)
                      .  ... ...+..+..+....+..........|..|++.+|++.|+.+...++ |.+++|.+.|.+.|...+.. . ...
T Consensus       347 ~--~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~  423 (467)
T PRK09556        347 T--SEY-MYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYT  423 (467)
T ss_pred             C--cHH-HHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccccccc
Confidence            1  111 1212222222222222223345666899999999999999999997 77999999999999211100 0 000


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhh
Q 014682          389 LPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       389 ~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      ..+|+..|.+..++.+++.+..+.
T Consensus       424 ~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        424 LTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHH
Confidence            127999999988888887666554

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.4e-36  Score=261.44  Aligned_cols=366  Identities=19%  Similarity=0.166  Sum_probs=287.0

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG   80 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G   80 (420)
                      |+||.++|.+|      .|++.+++.+.|.++..+.|.++||.++|+.+..++++.++..++++++++.+.+.+..+++|
T Consensus        55 l~e~~~lsk~~------lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng  128 (448)
T COG2271          55 LIEDGGLSKTQ------LGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNG  128 (448)
T ss_pred             HHHhcCCCHHH------HHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            46788899999      999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHH--hHhccccccCCccccccccccCccchHHHHHHH
Q 014682           81 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG--GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS  157 (420)
Q Consensus        81 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~--~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  157 (420)
                      ..+|.-.|. ...++.|+|++|||+..++++.+.|+|..+.|++.  +++..       +.+||..|         +..+
T Consensus       129 ~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~-------~~~w~~~f---------~~pg  192 (448)
T COG2271         129 WFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF-------HGGWRAAF---------YFPG  192 (448)
T ss_pred             HHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh-------ccchhHHH---------HHHH
Confidence            999987775 99999999999999999999999999999999999  77776       44555544         6666


Q ss_pred             HHHHH-HHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCC-----CCchhhhccchhHHHHHHHHHHHHhh
Q 014682          158 LFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE-----ATPKKSLLKNWPLMSSIIVYCVFSLH  231 (420)
Q Consensus       158 ~~~~~-~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (420)
                      +.+++ .++.++.++|+|++....+-++-+. |..+..    +++++++     +.-.+.+++||.+|.+.+..++....
T Consensus       193 iiaiival~~~~~~rd~Pqs~GLP~ie~~~~-d~~e~~----~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYiv  267 (448)
T COG2271         193 IIAIIVALILLFLLRDRPQSEGLPPIEEYRG-DPLEIY----EEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVV  267 (448)
T ss_pred             HHHHHHHHHHHHHhCCCccccCCCCHHHhhc-Cchhhh----hhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence            66665 4556677888887654432211111 111111    1111111     12356789999999999999999999


Q ss_pred             hhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHHH
Q 014682          232 DMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL--GPIMVARIAGVLTIPLLTSYPYIA  309 (420)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  309 (420)
                      -.+...+.|.|+.+.     .|++...++...+..=.+++++.+ +.+|++||.  |||....+.+.+.....+...+..
T Consensus       268 R~gi~dW~p~YL~e~-----k~~s~~~a~~a~~lfE~agl~G~L-l~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~  341 (448)
T COG2271         268 RYGINDWGPLYLSEV-----KGFSLVKANWAISLFEVAGLPGTL-LAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA  341 (448)
T ss_pred             HHHHhhhHHHHHHHh-----cCCCHHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC
Confidence            999999999999887     899999999999999999999988 888888885  455444444333333333332322


Q ss_pred             HhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHH-HHHHhhhhhhHHHHhhhhccCCCC
Q 014682          310 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL-FKAAGPAGGGALFSWAQKRLDASF  388 (420)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~g~~~~g~l~~~~~~~~~~~~  388 (420)
                      .  . .+.....++.+..|+...+..-.......|..|.+..|++.|+...+..+ |.+.+....|.+.|..        
T Consensus       342 ~--~-~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~--------  410 (448)
T COG2271         342 P--N-GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTW--------  410 (448)
T ss_pred             C--C-ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecC--------
Confidence            1  1 12334445555555666666667778888999999999999999999999 9999999999998886        


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhh
Q 014682          389 LPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       389 ~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                        ||...|++..+.++++.++...
T Consensus       411 --gW~g~Fi~~~~~a~l~~lll~~  432 (448)
T COG2271         411 --GWDGGFIVLSIAALLAILLLLP  432 (448)
T ss_pred             --CCcchHHHHHHHHHHHHHHHHH
Confidence              8999999888877777666544

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=5.9e-35  Score=268.99  Aligned_cols=350  Identities=12%  Similarity=0.047  Sum_probs=259.1

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG   80 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G   80 (420)
                      +++|+|+|.++      .+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+.+++++|++.++++|+++|
T Consensus        35 i~~~~~~s~~~------~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~G  108 (393)
T PRK09705         35 LRQASGMSFSV------AALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGG  108 (393)
T ss_pred             HHHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHH
Confidence            46899999999      999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHH
Q 014682           81 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF  159 (420)
Q Consensus        81 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  159 (420)
                      ++.+...+. ..++.|++| ++|+++++.+..+.+.|..+++.+++++.++      ..+||..+         ...++.
T Consensus       109 ig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~------~~~w~~~~---------~~~~~~  172 (393)
T PRK09705        109 VGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQH------SETWYQTL---------AWWALP  172 (393)
T ss_pred             hHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCHHHHH---------HHHHHH
Confidence            999988887 888999987 7899999999999999999999999998872      12565443         233333


Q ss_pred             HHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014682          160 AFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       160 ~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      .++.....+...+++++++  ++                   +   +...++.+++++.+...+...+..........+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~--~~-------------------~---~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l  228 (393)
T PRK09705        173 AVVALFAWWWQSAREVASS--HK-------------------T---TTTPVRVVFTPRAWTLGVYFGLINGGYASLIAWL  228 (393)
T ss_pred             HHHHHHHHHHHhcCCCccc--cC-------------------C---CcCCcccccCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3332222222221111000  00                   0   0112345667777776666666666666677778


Q ss_pred             HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014682          240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFL  319 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (420)
                      |.++.+      +|.+..+++...+..+++.+++++ ..+++.||.++|+....+..+..++...+...+..   .....
T Consensus       229 p~~l~~------~g~s~~~ag~~~~~~~i~~i~g~~-~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~  298 (393)
T PRK09705        229 PAFYIE------IGASAQYSGSLLALMTLGQAAGAL-LMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQ---LPVLW  298 (393)
T ss_pred             HHHHHH------cCCChhhhhHHHHHHHHHHHHHHH-HHHHHHhhccchHHHHHHHHHHHHHHHHHHHccch---HHHHH
Confidence            877743      588999999999999999999988 67789999999988888776666665544332211   11111


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhhcC-CcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHH
Q 014682          320 LNCASVVKNLLSVSIITGLFILQNRAV-DQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFV  398 (420)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~  398 (420)
                      .    .+.+.......+.......+.. |++++++..|+.+...++++.++|.+.|++.|..+         ++...|.+
T Consensus       299 ~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g---------~~~~~~~~  365 (393)
T PRK09705        299 A----MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG---------NYLMDWAF  365 (393)
T ss_pred             H----HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CchHHHHH
Confidence            1    1122333344555555555555 46789999999999999999999999999999973         57888888


Q ss_pred             HHHHHHHHHHHHhhhhhhccCC
Q 014682          399 LNVVEAIGVLMTFKPFLAQRHD  420 (420)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~  420 (420)
                      .++++++..+..+. ..||++|
T Consensus       366 ~~~~~~~~~~~~~~-~~~~~~~  386 (393)
T PRK09705        366 HALCVVGLMIITLR-FAPARFP  386 (393)
T ss_pred             HHHHHHHHHHHHHH-hcccccc
Confidence            88877777666655 5666553

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=7e-35  Score=280.91  Aligned_cols=385  Identities=17%  Similarity=0.154  Sum_probs=273.7

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      .+++|++..+      .+++.+++.++.+++++++|+++||+|||+++++++++.+++.++++++++++.++++|++.|+
T Consensus       194 ~~~~gls~~~------~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~  267 (742)
T TIGR01299       194 EKDLCIPDSG------KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGF  267 (742)
T ss_pred             HHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4678888888      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccc----cCccchHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF----GKFPYFLPCLCI  156 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~----~~~~~~~~~~~~  156 (420)
                      +.|...|. .+++.|++|+++|++.+++...+..+|.++++.++..+..       .+||+...    ...+||..+++.
T Consensus       268 g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~-------~~G~~~~~g~~~~~~gWR~l~~i~  340 (742)
T TIGR01299       268 GIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP-------HYGWSFQMGSAYQFHSWRVFVIVC  340 (742)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hccchhccccccccccHHHHHHHH
Confidence            99888887 9999999999999999999999999999999999988876       56665322    245788888888


Q ss_pred             HHHHHHHHHHHHhcccccCCCCCCCCccc--chhHhhhhhh-----------------hh-hhh---h-hcCCC------
Q 014682          157 SLFAFGVTIAAFWLPETLHRHNDDDDSCD--VSYDALESAS-----------------AE-VKE---E-EGREA------  206 (420)
Q Consensus       157 ~~~~~~~~~~~~~l~e~~~~~~~~~~~~~--~~~~~~~~~~-----------------~~-~~~---~-~~~~~------  206 (420)
                      +++.++.++..+++||+|++...+.+.++  +..+.+...+                 .. .++   + ++...      
T Consensus       341 ~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (742)
T TIGR01299       341 AFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRC  420 (742)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcc
Confidence            88877777778899999987433222111  1111110000                 00 000   0 00000      


Q ss_pred             ------------CchhhhccchhHH---HHHHHHHHHHhhhhhHHHHHHHhhcCc-------------------------
Q 014682          207 ------------TPKKSLLKNWPLM---SSIIVYCVFSLHDMAYSEIFSLWANSP-------------------------  246 (420)
Q Consensus       207 ------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------  246 (420)
                                  ...+++++.+..+   ...+.+++..+...+...++|..+...                         
T Consensus       421 ~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (742)
T TIGR01299       421 FVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFT  500 (742)
T ss_pred             hhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccc
Confidence                        0234455554433   333444555555566666777543210                         


Q ss_pred             cc-----CC--------cc-------------------------------------------------------------
Q 014682          247 KK-----LG--------GL-------------------------------------------------------------  252 (420)
Q Consensus       247 ~~-----~~--------~~-------------------------------------------------------------  252 (420)
                      ..     ..        ++                                                             
T Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  580 (742)
T TIGR01299       501 LENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNK  580 (742)
T ss_pred             hhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccC
Confidence            00     00        00                                                             


Q ss_pred             -CC---------chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 014682          253 -NY---------STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNC  322 (420)
Q Consensus       253 -~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (420)
                       +.         +.........+.+++.+++.+ +.+++.||+|||+++..+.++.+++.+++.+....     . .+.+
T Consensus       581 ~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~i-l~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~-----~-~ll~  653 (742)
T TIGR01299       581 EGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNI-VSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSE-----S-AMIA  653 (742)
T ss_pred             CccCccCCccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccH-----H-HHHH
Confidence             00         001123345555677788877 78888889999999988888887777666543321     1 1222


Q ss_pred             HHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHH
Q 014682          323 ASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVV  402 (420)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~  402 (420)
                      ..++.+++..+..+....+++|.+|++.|++++|+.+....+|++++|.+.|.+.+..           ...+|++++++
T Consensus       654 ~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~-----------~~~pf~i~a~~  722 (742)
T TIGR01299       654 LLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT-----------KAAPILFASAA  722 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHH
Confidence            2233445556677888899999999999999999999999999999999999988753           45678888887


Q ss_pred             HHHHHHHHhhhhhhccC
Q 014682          403 EAIGVLMTFKPFLAQRH  419 (420)
Q Consensus       403 ~~~~~~~~~~~~~~~~~  419 (420)
                      .+++.++.+.  +||++
T Consensus       723 lll~~ll~~~--LPET~  737 (742)
T TIGR01299       723 LACGGLLALK--LPDTR  737 (742)
T ss_pred             HHHHHHHHHh--CCCCc
Confidence            7777666555  47754

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=3.4e-35  Score=271.91  Aligned_cols=367  Identities=14%  Similarity=0.084  Sum_probs=254.6

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG   80 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G   80 (420)
                      +++|+|+++++      .|++.+++.+++.+++++.|+++||+|||+++..++++.+++.+++++++|++.+++.|+++|
T Consensus        34 l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  107 (412)
T TIGR02332        34 MGKDLGLSATM------FGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVG  107 (412)
T ss_pred             hHhhcCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            46899999999      999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHH
Q 014682           81 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF  159 (420)
Q Consensus        81 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  159 (420)
                      ++.+...|. ..++.|++|+|+|++++++++.+.++|.++++.+++.+.+... .....|||+.|         .+.++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~gwr~~f---------~~~~~~  177 (412)
T TIGR02332       108 IAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG-LMALKGWQWLF---------LLEGFP  177 (412)
T ss_pred             HHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCccchhHHH---------HHHHHH
Confidence            999998887 8899999999999999999999999999999999998874110 00134555554         666666


Q ss_pred             HHHH-HHHHHhcccccCCCCCCCCccc-chhHhhhhhhhhhhh-hh--cCCC----CchhhhccchhHHHHHHHHHHHHh
Q 014682          160 AFGV-TIAAFWLPETLHRHNDDDDSCD-VSYDALESASAEVKE-EE--GREA----TPKKSLLKNWPLMSSIIVYCVFSL  230 (420)
Q Consensus       160 ~~~~-~~~~~~l~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  230 (420)
                      .++. .+.++++||+|++.+.-.++++ ...+..+....+.++ ++  ++++    ..++++ +++.++...+.+++...
T Consensus       178 ~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  256 (412)
T TIGR02332       178 SVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREI-FTPAIMLYTLAYFCLTN  256 (412)
T ss_pred             HHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHh-cChHHHHHHHHHHHHHH
Confidence            5543 4456678888764321111111 110111100000000 00  0001    112333 35777777777777777


Q ss_pred             hhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH-HHHHHHHHHHHHHHHHHHH
Q 014682          231 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV-ARIAGVLTIPLLTSYPYIA  309 (420)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  309 (420)
                      ......++.|.++.+.    +.++++.+++.......++.+++.+ ..+++.||+++|+. .........+.... ....
T Consensus       257 ~~~~~~~~~p~~l~~~----~~~~s~~~~~~~~~~~~l~~~~g~l-~~g~l~dr~~~r~~~~~~~~~~~~~~~~~-~~~~  330 (412)
T TIGR02332       257 TLSAINIWTPQILQSF----NQGSSNIMIGLLAAIPQFCTIFGMI-WWSRHSDRLKERKHHTALPYLFAAAGWLL-ASAT  330 (412)
T ss_pred             HHHHHHHHHHHHHHhc----CCCCcHHHhHHHhhHHHHHHHHHHH-HHHHHhcccCccHHHHHHHHHHHHHHHHH-HHhc
Confidence            7777788899888652    1467788889888998999999887 88888988886654 33333333322211 1111


Q ss_pred             HhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCC
Q 014682          310 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFL  389 (420)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~  389 (420)
                        .. .... .... .....+.....+.......+..|+++|+++.|+.+...++|++++|.+.|.+.|..+        
T Consensus       331 --~~-~~~~-~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g--------  397 (412)
T TIGR02332       331 --DH-NLIQ-LLGI-IMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG--------  397 (412)
T ss_pred             --CC-HHHH-HHHH-HHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC--------
Confidence              11 1111 1111 111111122233344455677899999999999999999999999999999999872        


Q ss_pred             CCchHHHHHHHHHHH
Q 014682          390 PGSQMVFFVLNVVEA  404 (420)
Q Consensus       390 ~g~~~~f~~~~~~~~  404 (420)
                       +|+..+.+++++.+
T Consensus       398 -~~~~~~~~~~~~~~  411 (412)
T TIGR02332       398 -SFNSGLWFVAALLV  411 (412)
T ss_pred             -CCchhHHHHHHHHh
Confidence             58888877766543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=3.3e-34  Score=271.58  Aligned_cols=348  Identities=15%  Similarity=0.092  Sum_probs=261.2

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG   80 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G   80 (420)
                      +.+|+|.+.++      .+|+.+.+.+++..+.+++|+++||+|||++++.+..+..++++++++++|++.++++|+++|
T Consensus        32 i~~~l~~s~~~------~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G  105 (495)
T PRK14995         32 LSMTLGASGNE------LLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLA  105 (495)
T ss_pred             HHHHhCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35789999999      999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhhh-Hhhhhhhc-hhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHH
Q 014682           81 SLNGLLGPI-KAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISL  158 (420)
Q Consensus        81 ~~~g~~~~~-~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  158 (420)
                      ++.+...|. ...+.+.+ |+++|++++++.....++|..+||.+++++.+       .+|||+.|         .+...
T Consensus       106 ~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~-------~~gwr~~f---------~i~~~  169 (495)
T PRK14995        106 IGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE-------HFYWGSVF---------LINVP  169 (495)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------cCChHHHH---------HHHHH
Confidence            998888886 77776765 78999999999999999999999999999998       66777665         44443


Q ss_pred             HHHH-HHHHHHhcccccCCCCCCCCcccchh---------Hhhhhh---h-h------------------hhhhhhcCCC
Q 014682          159 FAFG-VTIAAFWLPETLHRHNDDDDSCDVSY---------DALESA---S-A------------------EVKEEEGREA  206 (420)
Q Consensus       159 ~~~~-~~~~~~~l~e~~~~~~~~~~~~~~~~---------~~~~~~---~-~------------------~~~~~~~~~~  206 (420)
                      ..++ .++..+.+||++++++++.+......         ...++.   . .                  ...|.+.+.+
T Consensus       170 ~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p  249 (495)
T PRK14995        170 IVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRP  249 (495)
T ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            3333 33455667876543222221111100         000000   0 0                  0112222334


Q ss_pred             CchhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014682          207 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  286 (420)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (420)
                      ....+++|+|.+....+..++..........+.|.|++..     +|+++.++|....+..+...++.+ +.+++.||++
T Consensus       250 ~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v-----~g~s~~~ag~~~~~~~~~~~~~~~-~~g~l~~r~g  323 (495)
T PRK14995        250 MIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFV-----HGLSPLEAGMFMLPVMVASGFSGP-IAGILVSRLG  323 (495)
T ss_pred             CcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcC
Confidence            4456789999988777777766666666666788887766     799999999999999999998887 7777888889


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHH
Q 014682          287 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFK  366 (420)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  366 (420)
                      +|+.+..+..+..++...+.......+  .+. ......+.+++.....+.......+..|+++++.+.++.++.+++|+
T Consensus       324 ~~~~~~~g~~~~~~~~~~l~~~~~~~~--~~~-~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~  400 (495)
T PRK14995        324 LRLVATGGMALSALSFYGLAMTDFSTQ--QWQ-AWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGA  400 (495)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcCCCc--hHH-HHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHH
Confidence            988888777776666555443321111  111 22334444555566666677777788999999999999999999999


Q ss_pred             HHhhhhhhHHHHh
Q 014682          367 AAGPAGGGALFSW  379 (420)
Q Consensus       367 ~~g~~~~g~l~~~  379 (420)
                      .+|+.+.|.+++.
T Consensus       401 ~~G~ai~g~i~~~  413 (495)
T PRK14995        401 GLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999875

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.1e-34  Score=260.92  Aligned_cols=390  Identities=20%  Similarity=0.202  Sum_probs=293.2

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL---SVNFWMAVLTRFLL   79 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~   79 (420)
                      +++|.+.++++.....+.+.+++.+|.++|+...|.++||+|||..+.++.++..++.++..+   .++++.++++|++.
T Consensus        47 ~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~  126 (485)
T KOG0569|consen   47 ERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIV  126 (485)
T ss_pred             HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            566766677777888999999999999999999999999999999999999988888877766   47899999999999


Q ss_pred             hhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHH
Q 014682           80 GSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISL  158 (420)
Q Consensus        80 G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  158 (420)
                      |+..|..... ..++.|..|++.||....+.+.+..+|..++..++.--         .+|-     ...|...+....+
T Consensus       127 Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~---------ilGt-----~~~W~~l~~~~~i  192 (485)
T KOG0569|consen  127 GLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPS---------LLGT-----EDLWPYLLAFPLI  192 (485)
T ss_pred             HHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHH---------hcCC-----CcchHHHHHHHHH
Confidence            9999998887 99999999999999999999999999999987665322         2222     2335566677778


Q ss_pred             HHHHHHHHHHhcccccCCCCCC-CCcccch--hH----------hhhhhhhhhhhhhc--CCCCchhhhccchhHHHHHH
Q 014682          159 FAFGVTIAAFWLPETLHRHNDD-DDSCDVS--YD----------ALESASAEVKEEEG--REATPKKSLLKNWPLMSSII  223 (420)
Q Consensus       159 ~~~~~~~~~~~l~e~~~~~~~~-~~~~~~~--~~----------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  223 (420)
                      ++++.++...++||||++.-.+ ++++++.  .+          +.++..++.++++.  ++..+.+++++|+..+....
T Consensus       193 ~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~  272 (485)
T KOG0569|consen  193 PALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLL  272 (485)
T ss_pred             HHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHH
Confidence            8888888899999999985442 2222221  11          11111111111111  25567889999988876544


Q ss_pred             HHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 014682          224 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT  303 (420)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (420)
                      ..+..... ..+....+.+.+......+.|+++.++.......++...+..+ ++.++.||.|||+++..+..++.+..+
T Consensus       273 i~~~v~~~-qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~-~~~~lid~~gRRpLll~~~~~~~~~~~  350 (485)
T KOG0569|consen  273 IGIVVSFA-QQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTL-VSPFLIDRLGRRPLLLISLSLMAVALL  350 (485)
T ss_pred             HHHHHHHH-HHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            43332222 1112222333333334444799999999999999999999988 888888999999999999988888776


Q ss_pred             HHHHHHHhhhhH-HH---HHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHh
Q 014682          304 SYPYIAMLSGFG-LA---FLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW  379 (420)
Q Consensus       304 ~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  379 (420)
                      .+.......... .|   ..+.........+..+..|..+-+.+|++|++.|..++++...++.+..++-...+..+.+.
T Consensus       351 ~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~  430 (485)
T KOG0569|consen  351 LMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV  430 (485)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665544333222 12   22334444455667778899999999999999999999999999999999999999999998


Q ss_pred             hhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 014682          380 AQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD  420 (420)
Q Consensus       380 ~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  420 (420)
                      .          |. ..|+.+.+.+.+..++.++ ++||+|+
T Consensus       431 ~----------g~-~~filF~i~~~~~~i~~~~-~lPETkg  459 (485)
T KOG0569|consen  431 I----------GP-YVFILFVIPLAIFLIYLYR-YLPETKG  459 (485)
T ss_pred             h----------cc-hhhHHHHHHHHHHHHHHHH-hCcccCC
Confidence            8          44 7888899999999888888 8999873

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=2.3e-34  Score=264.83  Aligned_cols=344  Identities=14%  Similarity=0.117  Sum_probs=255.2

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      ++|+|+|+++      .|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+.+++++|++.++++|++.|+
T Consensus        30 ~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  103 (377)
T TIGR00890        30 GRYFGVGVTA------VAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASA  103 (377)
T ss_pred             HHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            5789999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...+. ...+.|++| |+|+++.++...+.++|..+++++.+.+.+       ..|||+         .+...++..
T Consensus       104 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~---------~f~~~~~~~  166 (377)
T TIGR00890       104 GVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN-------LEGVPA---------AFIYMGIIF  166 (377)
T ss_pred             HHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh-------cccHHH---------HHHHHHHHH
Confidence            98877665 778888887 579999999999999999887777777766       345544         446666665


Q ss_pred             HHHHH-HHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014682          161 FGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       161 ~~~~~-~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      ++..+ ..++++|+++++++++++ .                 +++....++.+|+|.++...+..++............
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (377)
T TIGR00890       167 LLVIVLGAFLIGYPPGQLIKTNIE-V-----------------SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLY  228 (377)
T ss_pred             HHHHHHHHHheecCchhccccCcc-c-----------------chhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHH
Confidence            55433 344455443321111100 0                 0011234567788888776666555544444444444


Q ss_pred             HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014682          240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFL  319 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (420)
                      +.|..+      .+.++.+.+...+...+..+++++ ..+++.||++||+.+..+.....++.......+..   .... 
T Consensus       229 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-  297 (377)
T TIGR00890       229 KPYGQS------LGLSDGFLVLAVSISSIFNGGGRP-FLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPML---NDVL-  297 (377)
T ss_pred             HHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccc---hhHH-
Confidence            444322      578888889999998999999887 77888888899998888777777666555443221   1111 


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHH
Q 014682          320 LNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVL  399 (420)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~  399 (420)
                      ......+.+.......+....+.+|.+|+++|+++.|+.+....+|..++|.+.|.+.|..          ||+..|.+.
T Consensus       298 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------g~~~~f~~~  367 (377)
T TIGR00890       298 FLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI----------GFEYTFIVT  367 (377)
T ss_pred             HHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh----------chhhHHHHH
Confidence            1122222233334445566778889999999999999999999999999999999999987          899999988


Q ss_pred             HHHHHHHH
Q 014682          400 NVVEAIGV  407 (420)
Q Consensus       400 ~~~~~~~~  407 (420)
                      +++.+++.
T Consensus       368 ~~~~~~~~  375 (377)
T TIGR00890       368 GAFALTSL  375 (377)
T ss_pred             HHHHHHhc
Confidence            88777654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=100.00  E-value=2.2e-35  Score=250.77  Aligned_cols=360  Identities=38%  Similarity=0.572  Sum_probs=274.0

Q ss_pred             ccccccccccc--hhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 014682            3 KDFQIAKREED--IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG   80 (420)
Q Consensus         3 ~~~~~s~~~~~--~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G   80 (420)
                      ++|+.-..+.+  ...+.|.+.+.+.+.+.+.++.+|.++||+|||+++.+|++..++...+.+.++||..++++|++.|
T Consensus        53 ~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~G  132 (451)
T KOG2615|consen   53 RDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGG  132 (451)
T ss_pred             HHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44444433334  7778999999999999999999999999999999999999999999999999999977778899999


Q ss_pred             hhccchhhhHhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           81 SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        81 ~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +..|...++.++++|..++|+|+++++.++...++|.++||.+|+++.+.        .  ..++++++.++.++..+.+
T Consensus       133 i~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f--------~--~~~g~~p~alP~~~v~i~a  202 (451)
T KOG2615|consen  133 IFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQF--------S--SISGSYPFALPCLLVFILA  202 (451)
T ss_pred             hccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhh--------H--hhhccCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999871        1  2233666777666666666


Q ss_pred             HH-HHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014682          161 FG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       161 ~~-~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      .. .....+++||+-+.++++ ++.....+..++.    .+..+.+.......+||++....+..+..+....+.+...+
T Consensus       203 ~~~v~~~~~~lpETL~~rk~~-~~~~~~~~~~~~~----~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~  277 (451)
T KOG2615|consen  203 AGDVTFFPWFLPETLPLRKRN-DEHSTLQEAADDR----LALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELF  277 (451)
T ss_pred             HHHHHHHHHhCCccccchhhc-ccccchhhhhhhh----hhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHH
Confidence            66 556778999997665554 2211111111111    11111112223345677777666666666666667777777


Q ss_pred             HHhhcCcccC--CccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 014682          240 SLWANSPKKL--GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP-IMVARIAGVLTIPLLTSYPYIAMLSGFGL  316 (420)
Q Consensus       240 ~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (420)
                      +.|..+....  .++|+++.+.|.+++..++...+.+....+++.+..+. +..+.....++...++++.....      
T Consensus       278 s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~------  351 (451)
T KOG2615|consen  278 SGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLART------  351 (451)
T ss_pred             HHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcccc------
Confidence            7776665544  66999999999999999999999998777777765444 33444444444444444433322      


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhc
Q 014682          317 AFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKR  383 (420)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~  383 (420)
                      ...+.+...+..+......+....++.+..|+++||++.|+......++.++||.+.|.+..+....
T Consensus       352 ~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~  418 (451)
T KOG2615|consen  352 PVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGA  418 (451)
T ss_pred             chhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCC
Confidence            2345666777777888888999999999999999999999999999999999999999999988644

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=5.5e-34  Score=266.48  Aligned_cols=336  Identities=15%  Similarity=0.174  Sum_probs=239.0

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      ++|+|.|+.+      .+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.++++|+++|+
T Consensus        45 ~~~~~~s~~~------~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  118 (426)
T PRK12307         45 KADLGLTDME------GAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGM  118 (426)
T ss_pred             HHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            5789999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...+. ..++.|++|+|+|+++.++...+.++|.++++.+.+.+.+       ..+||+.|         .+..+..
T Consensus       119 g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~-------~~~w~~~f---------~i~~~~~  182 (426)
T PRK12307        119 GMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE-------AYGWRAAF---------FVGLLPV  182 (426)
T ss_pred             HHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc-------cCCHHHHH---------HHHHHHH
Confidence            98888887 8999999999999999999999999999999999988887       55666554         4433333


Q ss_pred             HHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHh---hhhhHHH
Q 014682          161 FGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSL---HDMAYSE  237 (420)
Q Consensus       161 ~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  237 (420)
                      ++........||++++.+++.++++          ++.++..+......++++|+|.++...........   .......
T Consensus       183 ~~~~~~~~~~p~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (426)
T PRK12307        183 LLVIYIRARAPESKEWEEAKLSGKG----------KHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFG  252 (426)
T ss_pred             HHHHHHHHHCCCChHHHHhhhhccc----------cccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3222223334544322111100000          00000001112245677888877654433322221   2223445


Q ss_pred             HHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 014682          238 IFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLA  317 (420)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (420)
                      +.|.|..+      .|+++.+.+...+...++.+++++ ..+++.||+++|+....+..+..+..+.......  ... .
T Consensus       253 ~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~g~~-~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~  322 (426)
T PRK12307        253 LLPTYLAG------EGFDTGVVSNLMTAAAFGTVLGNI-VWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQ--DNY-L  322 (426)
T ss_pred             HHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcc--ccH-H
Confidence            66766643      478888899988888899999887 7788888889998888777665554443322211  111 1


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhh
Q 014682          318 FLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  380 (420)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  380 (420)
                       ......+..+....+..+.....+.|.+|+++||++.|+.+....+++.++|.+.|.+.+..
T Consensus       323 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~  384 (426)
T PRK12307        323 -LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM  384 (426)
T ss_pred             -HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc
Confidence             11111111111222334455667789999999999999999999999999999999999987

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=7.5e-34  Score=263.88  Aligned_cols=348  Identities=18%  Similarity=0.127  Sum_probs=253.2

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      .+|+|.++++      .+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++.++++++.+++.|+++|+
T Consensus        42 ~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  115 (406)
T PRK11551         42 AQEFGLDVAQ------MGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGV  115 (406)
T ss_pred             HHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            5788999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...+. .+++.|++|+|+|++++++.+.+..+|..+++.+++.+.+       ..+||..         +.+.++..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~---------~~~~~~~~  179 (406)
T PRK11551        116 GLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG-------DAAWRHI---------FYVGGVGP  179 (406)
T ss_pred             hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------ccCHHHH---------HHHHHHHH
Confidence            98888887 9999999999999999999999999999999999988876       4455443         35554444


Q ss_pred             HHH-HHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhcc---chhHHHHHHHHHHHHhhhhhHH
Q 014682          161 FGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK---NWPLMSSIIVYCVFSLHDMAYS  236 (420)
Q Consensus       161 ~~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  236 (420)
                      +.. .....++||++++.+++++++++.                   ...+..++   ++..+......++.........
T Consensus       180 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (406)
T PRK11551        180 LLLVPLLMRWLPESRAFAQAAGAGKQRA-------------------PVLRALFGEGRATATLLLWISYFFTLIVLYFLL  240 (406)
T ss_pred             HHHHHHHHHhCCCChhHHhccCcchhhh-------------------hhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            433 344566788765432211100000                   00011111   1222222233333333334444


Q ss_pred             HHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 014682          237 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGL  316 (420)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (420)
                      .+.|.+..+      .|+++.+.+.......++.+++++ ..+++.||.++|+.+..+.....++...+.....     .
T Consensus       241 ~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-----~  308 (406)
T PRK11551        241 NWLPSLLVG------QGLSRSQAGLVQIAFNIGGALGSL-LIGALMDRLRPRRVVLLIYAGILASLAALAAAPS-----F  308 (406)
T ss_pred             HHHHHHHHh------CCCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCc-----H
Confidence            566666543      588999999999999999999987 7777888889988877765555544444333221     1


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHH
Q 014682          317 AFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVF  396 (420)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f  396 (420)
                      + .+....++.++......+...++..|.+|+++|+++.|+.+....++..++|.+.|.+.+...         ++...+
T Consensus       309 ~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~---------~~~~~~  378 (406)
T PRK11551        309 A-GMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR---------STVGVI  378 (406)
T ss_pred             H-HHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC---------chHHHH
Confidence            1 122333444455556677888899999999999999999999999999999999999998752         456666


Q ss_pred             HHHHHHHHHHHHHHhh
Q 014682          397 FVLNVVEAIGVLMTFK  412 (420)
Q Consensus       397 ~~~~~~~~~~~~~~~~  412 (420)
                      .....+.+++.++.+.
T Consensus       379 ~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        379 GASIPVILVAALAALL  394 (406)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666666666555544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=1.2e-33  Score=267.61  Aligned_cols=354  Identities=14%  Similarity=0.107  Sum_probs=231.5

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHH--------HHHHHHHhhhhccchhhh-Hhh
Q 014682           22 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM--------AVLTRFLLGSLNGLLGPI-KAY   92 (420)
Q Consensus        22 ~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~-~~~   92 (420)
                      .++.++++.+++++.|+++||+|||+++..++++++++++++++++|++.        ++++|+++|++.|...+. .++
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~  142 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF  142 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence            58888999999999999999999999999999999999999999999875        889999999999988887 999


Q ss_pred             hhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHHHHHHhccc
Q 014682           93 ACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE  172 (420)
Q Consensus        93 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  172 (420)
                      ++|++|+|+|+++.++...+..+|..+|+.+...+......       .. ...++||.++.+.+++.++.++....+||
T Consensus       143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~-------~~-~~~~gWR~~f~i~~~~~l~~~~~~~~~~e  214 (490)
T PRK10642        143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGE-------AN-FLDWGWRIPFFIALPLGIIGLYLRHALEE  214 (490)
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HH-hcCccHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999988888988888776555421000       00 00234555556666555555555677888


Q ss_pred             ccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccc-hhHHH-HHHHHHHHHhhhhhHHHHHHHhhcCcccCC
Q 014682          173 TLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN-WPLMS-SIIVYCVFSLHDMAYSEIFSLWANSPKKLG  250 (420)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (420)
                      +|++.+.+++.++..          .++.+++++.+.++++++ ++.+. .....++..........+.|.|+.+.    
T Consensus       215 sp~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----  280 (490)
T PRK10642        215 TPAFQQHVDKLEQGD----------REGLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHN----  280 (490)
T ss_pred             ChhHHHHHHhhhhhc----------cccccccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence            876432111000000          000001112234555543 22222 22222333344455556777777544    


Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 014682          251 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL  330 (420)
Q Consensus       251 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (420)
                       +|++..+.+.......++..++.+ ..+++.||+|||+.+..+.+...+............  . ...+....++.++.
T Consensus       281 -~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~g~~  355 (490)
T PRK10642        281 -LHYSEDHGVLIIIAIMIGMLFVQP-VMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSN--V-IGLIFAGLLMLAVI  355 (490)
T ss_pred             -cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHHH
Confidence             678877777777776777777766 778899999999988777654333222211111111  1 11122222222233


Q ss_pred             hHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 014682          331 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  410 (420)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~  410 (420)
                      .............+.+|++.|+++.|+.+....+++.++|.+.+++.+..+         ++..++++.....+++.+..
T Consensus       356 ~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~---------~~~~~~~~~~~~~~i~~~~~  426 (490)
T PRK10642        356 LNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQ---------NLMMPAYYLMVVAVIGLITG  426 (490)
T ss_pred             HHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CchHHHHHHHHHHHHHHHHH
Confidence            334445566677788999999999998777777888999999999988652         34555555555555554444


Q ss_pred             h
Q 014682          411 F  411 (420)
Q Consensus       411 ~  411 (420)
                      +
T Consensus       427 ~  427 (490)
T PRK10642        427 V  427 (490)
T ss_pred             H
Confidence            3

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=2.8e-33  Score=257.59  Aligned_cols=338  Identities=17%  Similarity=0.184  Sum_probs=249.5

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      .+|+|.++++      .++..+++.++..+++++.|+++||+|||++++.+.++.+++.+++.+++|++.+++.|+++|+
T Consensus        47 ~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  120 (394)
T PRK10213         47 AQDLGISEGV------AGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGL  120 (394)
T ss_pred             HHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHH
Confidence            5789999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...|. .+++.|++|+|+|++++++...+.++|..++|++++.+.+       .+|||+.|         ...++..
T Consensus       121 ~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~-------~~gw~~~f---------~~~~~l~  184 (394)
T PRK10213        121 ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE-------LIGWRNVF---------NAAAVMG  184 (394)
T ss_pred             hhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hcCHHHHH---------HHHHHHH
Confidence            99988887 9999999999999999999999999999999999999998       56666555         4444444


Q ss_pred             HHHH-HHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014682          161 FGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       161 ~~~~-~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      ++.. ......||+++++++                         .....++.+|+|.++...+..++..........+.
T Consensus       185 ~~~~l~~~~~~p~~~~~~~~-------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (394)
T PRK10213        185 VLCIFWIIKSLPSLPGEPSH-------------------------QKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYI  239 (394)
T ss_pred             HHHHHHHHHHCCCCCccccc-------------------------chhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4332 233445664321100                         00123467888888876665555444444444444


Q ss_pred             -HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHH
Q 014682          240 -SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL-TIPLLTSYPYIAMLSGFGLA  317 (420)
Q Consensus       240 -~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  317 (420)
                       |.+.. .     .|+++.+.+......+++.++++. +.+++.||.+ ++.......+ ......+.....     ..+
T Consensus       240 ~p~~~~-~-----~g~s~~~~g~~~~~~~~~~iig~~-~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~-----~~~  306 (394)
T PRK10213        240 RPVYMN-L-----AGFGVDGLTLVLLSFGIASFVGTS-LSSFILKRSV-KLALAGAPLVLAVSALVLTLWGS-----DKI  306 (394)
T ss_pred             HHHHHH-h-----cCCChhHHHHHHHHHHHHHHHHHH-HHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhh-----hHH
Confidence             44432 2     689999999999998999999987 6677777744 4443333333 222222222211     112


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHH
Q 014682          318 FLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFF  397 (420)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~  397 (420)
                       .+....++.++......+...+.+.+..| +++++..+......++|..+||.++|.++|..          |+...+.
T Consensus       307 -~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~----------g~~~~~~  374 (394)
T PRK10213        307 -VATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNI----------GLTSPLM  374 (394)
T ss_pred             -HHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------ChhhHHH
Confidence             22233444455556677777777888776 66778888888888999999999999999987          7888888


Q ss_pred             HHHHHHHHHHHHHh
Q 014682          398 VLNVVEAIGVLMTF  411 (420)
Q Consensus       398 ~~~~~~~~~~~~~~  411 (420)
                      ..+++.++..+...
T Consensus       375 ~~~~~~~~~~~~~~  388 (394)
T PRK10213        375 LSGTLMLLTALLVT  388 (394)
T ss_pred             HHHHHHHHHHHHHH
Confidence            87776665554443

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=1.6e-33  Score=268.85  Aligned_cols=366  Identities=16%  Similarity=0.177  Sum_probs=257.0

Q ss_pred             Cccccccc---ccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 014682            1 MIKDFQIA---KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF   77 (420)
Q Consensus         1 i~~~~~~s---~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~   77 (420)
                      +++|+|++   +.+      .+++.+++.++..+++++.|+++||+|||++++++.++..++.++.++++|++.+++.|+
T Consensus       115 i~~e~~l~c~~~~~------~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~  188 (505)
T TIGR00898       115 IVTEWDLVCEDAWK------VDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRL  188 (505)
T ss_pred             EEEEecceechHHH------HHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            35788888   666      899999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHH
Q 014682           78 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI  156 (420)
Q Consensus        78 l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  156 (420)
                      +.|++.+...+. ..++.|++|+++|+++.++...+..+|.+++|.++..+.+                   ||..+.+.
T Consensus       189 l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-------------------wr~~~~~~  249 (505)
T TIGR00898       189 LVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-------------------WRWLQLAV  249 (505)
T ss_pred             HHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-------------------HHHHHHHH
Confidence            999999998887 9999999999999999999999999999999998866542                   44445666


Q ss_pred             HHHHHHHHHHHHhcccccCCCCCCCCcccc--hhHhhhhhh----------h--hhhhhhcCCCCchhhhccchhHHHHH
Q 014682          157 SLFAFGVTIAAFWLPETLHRHNDDDDSCDV--SYDALESAS----------A--EVKEEEGREATPKKSLLKNWPLMSSI  222 (420)
Q Consensus       157 ~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~--~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (420)
                      +++.++..+..+++||+|++...+++.++.  ..++..+.+          .  ++++++++++...++++|+|.++...
T Consensus       250 ~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  329 (505)
T TIGR00898       250 SLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTT  329 (505)
T ss_pred             HHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHH
Confidence            676666666668899998764333222111  111111000          0  00001111234677889999887766


Q ss_pred             HHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 014682          223 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL  302 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (420)
                      +......+.........+.+.      ...+.+..   ......++..+++.+ +..++.||+|||+.+..+.++..++.
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~---~~~~~~~~~~i~~~~-~~~~l~dr~grr~~~~~~~~~~~~~~  399 (505)
T TIGR00898       330 LCLMMLWFTTAFSYYGLVLDL------GNLGGNIY---LDLFISGLVELPAKL-ITLLLIDRLGRRYTMAASLLLAGVAL  399 (505)
T ss_pred             HHHHHHHHHHHHHHHHHhccc------cccCCChH---HHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            655443332222211122222      12344433   223344566666666 67788888999999888887777766


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 014682          303 TSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQK  382 (420)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~  382 (420)
                      +.........   .+ ......++..++.....+..+.+.+|.+|++.|+++.|+.+....+|++++|.+.+ +.+ .  
T Consensus       400 l~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~--  471 (505)
T TIGR00898       400 LLLLFVPVDL---YF-LRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-K--  471 (505)
T ss_pred             HHHHHcCCCc---hH-HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-H--
Confidence            6554433211   11 12222333334455666778889999999999999999999999999999999998 433 3  


Q ss_pred             ccCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhccC
Q 014682          383 RLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH  419 (420)
Q Consensus       383 ~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  419 (420)
                              +...++.+.+++.+++.++...  .||++
T Consensus       472 --------~~~~~~~~~~~~~~~~~~~~~~--lpet~  498 (505)
T TIGR00898       472 --------WLFLPLVLFGGLALLAGILTLF--LPETK  498 (505)
T ss_pred             --------HHhhHHHHHHHHHHHHHHHHHc--CcCCC
Confidence                    4566777777777777666544  45544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=1.9e-33  Score=263.87  Aligned_cols=371  Identities=12%  Similarity=0.040  Sum_probs=248.5

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV----NFWMAVLTRFL   78 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l   78 (420)
                      ++ |.|+++      .+++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.+.+++++    +++.+++.|++
T Consensus        57 ~~-g~s~~~------~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l  129 (452)
T PRK11273         57 EQ-GFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL  129 (452)
T ss_pred             Hc-CCCHHH------HHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHH
Confidence            45 888888      99999999999999999999999999999999999999999999888763    78889999999


Q ss_pred             hhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHH-HHHHHHhHhccccccCCccccccccccCccchHHHHHH
Q 014682           79 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLI-IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI  156 (420)
Q Consensus        79 ~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  156 (420)
                      .|++.+...|. ...+.|++|+|+|++++++.+.+.++|.. .+|+++..+..       ..|||+.         +.+.
T Consensus       130 ~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~-------~~gw~~~---------f~i~  193 (452)
T PRK11273        130 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW-------FNDWHAA---------LYMP  193 (452)
T ss_pred             HHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-------hccHHHH---------HHHH
Confidence            99998887775 78889999999999999999999999874 45554433333       2345443         4555


Q ss_pred             HHHHHH-HHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCc-hhhhccchhHHHHHHHHHHHHhhhhh
Q 014682          157 SLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-KKSLLKNWPLMSSIIVYCVFSLHDMA  234 (420)
Q Consensus       157 ~~~~~~-~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (420)
                      ++..++ .++..+++||++++...+++++.+  ++..+..+++++++.+.++. .+.++|++.+|...+..++.......
T Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  271 (452)
T PRK11273        194 AFAAILVALFAFAMMRDTPQSCGLPPIEEYK--NDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYG  271 (452)
T ss_pred             HHHHHHHHHHHHHHccCCHhhcCCCChhhhh--hccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence            554444 345566778876543221111100  00000000000000000111 12467889998888877777766667


Q ss_pred             HHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHH-HHHHHHHHHHHHHHHHHHh
Q 014682          235 YSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL--GPIMVAR-IAGVLTIPLLTSYPYIAML  311 (420)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~  311 (420)
                      ...++|.|+.+.     .|++..+++....+..++.+++.+ +.+++.||+  +||.... ....+..++...+....  
T Consensus       272 ~~~~~P~~l~~~-----~g~s~~~~~~~~~~~~~~~~~g~~-~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~--  343 (452)
T PRK11273        272 ILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNP--  343 (452)
T ss_pred             HHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhc--
Confidence            777899888765     688888888888888888888877 778888887  4443222 22222222222221111  


Q ss_pred             hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHH-hhhhhhHHHHhhhhccCCCCCC
Q 014682          312 SGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAA-GPAGGGALFSWAQKRLDASFLP  390 (420)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-g~~~~g~l~~~~~~~~~~~~~~  390 (420)
                      .. ..+. ..+.....+...............|..|++.||++.|+.+...++|+.+ +|.+.|.+.|..          
T Consensus       344 ~~-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~----------  411 (452)
T PRK11273        344 AG-NPTV-DMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF----------  411 (452)
T ss_pred             cc-ChHH-HHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh----------
Confidence            11 1111 1111222222222222333455678899999999999999999998765 799999999998          


Q ss_pred             CchHHHHHHHHHHHHHHHHHhhhhhhcc
Q 014682          391 GSQMVFFVLNVVEAIGVLMTFKPFLAQR  418 (420)
Q Consensus       391 g~~~~f~~~~~~~~~~~~~~~~~~~~~~  418 (420)
                      |++..|.+++.+++++.+.......+|+
T Consensus       412 g~~~~f~~~~~~~~~~~~~~~~~~~~~~  439 (452)
T PRK11273        412 GWDGGFMVMIGGSILAVILLIVVMIGEK  439 (452)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            8999999888888887666654234443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=2.7e-33  Score=257.37  Aligned_cols=342  Identities=17%  Similarity=0.219  Sum_probs=244.2

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      ++|+|.+.++      .|++.+.+.+++.++++++|+++||+|||+++..+..+.+++.+++++++|++.+++.|+++|+
T Consensus        30 ~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~  103 (382)
T PRK10091         30 AHDVGISIPA------AGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGF  103 (382)
T ss_pred             HHHcCCCHHH------HhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence            5789999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...+. ..++.|++|+++|+++++....+..+|..++|++++.+.+       ..|||+.|         .+.++..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~-------~~gwr~~f---------~~~~~~~  167 (382)
T PRK10091        104 PHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ-------EFSWRYTF---------LLIAVFN  167 (382)
T ss_pred             hhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh-------hccHHHHH---------HHHHHHH
Confidence            98887777 8889999999999999999999999999999999999987       55665544         5555544


Q ss_pred             HHH-HHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014682          161 FGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       161 ~~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      ++. +...+.+||.+++++.      +.                   +...+.+|+++.+.......+.........++.
T Consensus       168 ~~~~~~~~~~lp~~~~~~~~------~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (382)
T PRK10091        168 IAVLASIYFWVPDIRDEAKG------GL-------------------REQFHFLRSPAPWLIFAATMFGNAGVFAWFSYI  222 (382)
T ss_pred             HHHHHHHHHhCCCCCccccc------CH-------------------HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443 3344567775321100      00                   001234566666655444433332223333344


Q ss_pred             HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014682          240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFL  319 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (420)
                      +.+..+.     .|+++.+.+...+..+++.+++++ ..+++.||+++++....+..+..++.+........  .  +..
T Consensus       223 ~~~~~~~-----~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~--~--~~~  292 (382)
T PRK10091        223 KPYMMFI-----SGFSETSMTFIMMLVGLGMVLGNL-LSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGM--K--TAS  292 (382)
T ss_pred             HHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhH-HHheeccccCchhHHHHHHHHHHHHHHHHHHHHhh--H--HHH
Confidence            4444433     689999999999999999999988 77788888899888887777666665444332211  1  111


Q ss_pred             HHHHHHHHHhhhHHHHH-HHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHH
Q 014682          320 LNCASVVKNLLSVSIIT-GLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFV  398 (420)
Q Consensus       320 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~  398 (420)
                      . ......+.+.....+ .......+..|++.++.+.  .+...++|.++||.+.|.+.|...         +|+..+.+
T Consensus       293 ~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~---------~~~~~~~~  360 (382)
T PRK10091        293 L-IFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGL---------AYNYVALP  360 (382)
T ss_pred             H-HHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHccc---------CcchHHHH
Confidence            1 111111222222223 3334445545556666554  467789999999999999999752         78888888


Q ss_pred             HHHHHHHHHHHHhh
Q 014682          399 LNVVEAIGVLMTFK  412 (420)
Q Consensus       399 ~~~~~~~~~~~~~~  412 (420)
                      .+++.++.......
T Consensus       361 ~~~~~~~~~~~~~~  374 (382)
T PRK10091        361 AALLSFAAMSSLLL  374 (382)
T ss_pred             HHHHHHHHHHHHHH
Confidence            87776666554444

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=4.8e-33  Score=259.74  Aligned_cols=346  Identities=14%  Similarity=0.112  Sum_probs=230.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHhhhhccchhhh-
Q 014682           19 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-   89 (420)
Q Consensus        19 g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~-   89 (420)
                      +.+.+..+++..++++++|+++||+|||+++..+.++++++++++++++++.        .+++.|+++|++.|...|. 
T Consensus        66 ~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~  145 (432)
T PRK10406         66 AGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTS  145 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhH
Confidence            3444556666679999999999999999999999999999999999988764        5889999999999998887 


Q ss_pred             HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHHHHHHh
Q 014682           90 KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW  169 (420)
Q Consensus        90 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (420)
                      .+++.|++|+|+|+++.++...+...|..+++.+...+....       +... ...++||.++.+.+++.++.......
T Consensus       146 ~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~-------~~~~-~~~~gWr~~F~i~~~~~ll~~~~~~~  217 (432)
T PRK10406        146 ATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTL-------EDAE-LREWGWRIPFALGAVLAVVALWLRRQ  217 (432)
T ss_pred             HHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CHHH-HhccchHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999888888888887765554210       0000 00334566667777766665555555


Q ss_pred             cccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHH-HhhhhhHHHHHHHhhcCccc
Q 014682          170 LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVF-SLHDMAYSEIFSLWANSPKK  248 (420)
Q Consensus       170 l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  248 (420)
                      +||+++++++                      ++++..+.++++|+|+.+...+...+. .........+.|.|+.+.  
T Consensus       218 ~~e~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~--  273 (432)
T PRK10406        218 LDETSQQETR----------------------ALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT--  273 (432)
T ss_pred             CCCCchHHHh----------------------hhcccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            6665432110                      000112466788888877655544432 444455667788777554  


Q ss_pred             CCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 014682          249 LGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKN  328 (420)
Q Consensus       249 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (420)
                         .|++..+.+...+...+...+++. +.+++.||.+||+.......+..+....+........ .....+ ....+..
T Consensus       274 ---~g~s~~~~~~~~~i~~~~~~i~~~-~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~  347 (432)
T PRK10406        274 ---AGMHANVASGIMTAALFVFMLIQP-LIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVS-SPYAAF-GLVMCAL  347 (432)
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHH-HHHHHHH
Confidence               688888888888887888788877 5578899999988776655543322221111111001 111111 1111111


Q ss_pred             hhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHH-HHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHH
Q 014682          329 LLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL-FKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGV  407 (420)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~  407 (420)
                      +......+....+.+|.+|++.|+++.|+.+...++ .+...|.+.+.+ +..+         .+...++..++..+++.
T Consensus       348 ~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g---------~~~~~~~~~~~~~~i~~  417 (432)
T PRK10406        348 LIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIG---------METAFFWYVTLMAVVAF  417 (432)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhC---------CCcHHHHHHHHHHHHHH
Confidence            122233345667889999999999999999988764 344577777744 5441         35556666666666665


Q ss_pred             HHHhh
Q 014682          408 LMTFK  412 (420)
Q Consensus       408 ~~~~~  412 (420)
                      +..+.
T Consensus       418 ~~~~~  422 (432)
T PRK10406        418 LVSLM  422 (432)
T ss_pred             HHHHH
Confidence            55544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=1.6e-33  Score=258.13  Aligned_cols=331  Identities=16%  Similarity=0.085  Sum_probs=251.0

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV-----NFWMAVLTRF   77 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~   77 (420)
                      +|++.++.+      .+++.+++.++..+++++.|+++||+|||++++.+.++..++.++..+++     +++.+++.|+
T Consensus        27 ~~~~~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
T TIGR00900        27 LAGTGSASV------LSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAG  100 (365)
T ss_pred             HHhhccHHH------HHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            456777788      99999999999999999999999999999999999999999998888887     9999999999


Q ss_pred             Hhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHH
Q 014682           78 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI  156 (420)
Q Consensus        78 l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  156 (420)
                      ++|++.+...+. .+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+       ..|||..|         ...
T Consensus       101 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~-------~~g~~~~~---------~~~  164 (365)
T TIGR00900       101 ILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA-------TLGIKWAI---------WVD  164 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHH---------HHH
Confidence            999999998887 9999999999999999999999999999999999999987       45555443         555


Q ss_pred             HHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHH
Q 014682          157 SLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYS  236 (420)
Q Consensus       157 ~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (420)
                      ++..++..+..+.+++++++++++++.+++.              .++..+..++++|+|.++...+..++.........
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (365)
T TIGR00900       165 AVGFAISALLIVSVRIPELAASEIQALSNAV--------------LRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAI  230 (365)
T ss_pred             HHHHHHHHHHHHhcccccCCCccccccchhH--------------HHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence            5444443333333322211111111000000              00011234567888888877776666665554444


Q ss_pred             -HHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 014682          237 -EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFG  315 (420)
Q Consensus       237 -~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (420)
                       .+.|.|..+.     +|.++.+.+......+++.+++.+ ..+++.||.++++....+..+..+..........     
T Consensus       231 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  299 (365)
T TIGR00900       231 VALFPYVQSKY-----LGRGSTHYGWVLAAFGLGALLGAL-LLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP-----  299 (365)
T ss_pred             HHHhHHHHHHH-----hCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch-----
Confidence             5677776544     688999999999999999988887 6678889889888887776655555554443321     


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhh
Q 014682          316 LAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  380 (420)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  380 (420)
                      ......+..++.+++.....+....+..|..|+++|+++.|+.+...+++..++|.+.|.+.|..
T Consensus       300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       300 NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            12233344555566667778888899999999999999999999999999999999999999875

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=1.6e-33  Score=261.93  Aligned_cols=347  Identities=15%  Similarity=0.149  Sum_probs=240.1

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      ++++|.++.+      .+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|+
T Consensus        39 ~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  112 (405)
T TIGR00891        39 AGEFGLTTVD------AASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGI  112 (405)
T ss_pred             HHHhCCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            5789999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...+. .+++.|++|+++|++++++...+..+|.++++.+++.+.+       ..+       .+|+..+.+.++..
T Consensus       113 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~-------~~~-------~~w~~~f~~~~~~~  178 (405)
T TIGR00891       113 GMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP-------VWG-------DGWRALFFISILPI  178 (405)
T ss_pred             hhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcC-------ccHHHHHHHHHHHH
Confidence            99988887 9999999999999999999999999999999999999886       222       12444445555555


Q ss_pred             HHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhh---hhhhcCCCCchhhhcc-chh-HHHHHHHHHHHHhhhhhH
Q 014682          161 FGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEV---KEEEGREATPKKSLLK-NWP-LMSSIIVYCVFSLHDMAY  235 (420)
Q Consensus       161 ~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~  235 (420)
                      ++.++....+||+++++++++++++ ..+..++..+++   ++..++.....++..+ ++. +........+........
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (405)
T TIGR00891       179 IFALWLRKNIPEAEDWKEKHAGKAL-VRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPI  257 (405)
T ss_pred             HHHHHHHHhCCCChhHHHHhhhhhh-hhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence            5555555667876543222111110 001100000000   0000000000111111 111 122222222223333344


Q ss_pred             HHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 014682          236 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFG  315 (420)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (420)
                      ..++|.|..+.     .|++..+.+.+.+...++.+++.+ ..+++.||+++|+.+..+..............  ..  .
T Consensus       258 ~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~~g~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~--~  327 (405)
T TIGR00891       258 QDLLPTYLKAD-----LGLSPHTVANIVVFSNIGAIVGGC-VFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI--GA--N  327 (405)
T ss_pred             hhhhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh--CC--c
Confidence            45566666544     789999999999999999999987 77788888899988877765543322221111  11  1


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhh
Q 014682          316 LAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  380 (420)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  380 (420)
                      .+. ......+.++......+......+|..|+++|+++.|+.+...+++..++|.+.|.+.|..
T Consensus       328 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~  391 (405)
T TIGR00891       328 VAV-LGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRL  391 (405)
T ss_pred             hHH-HHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            111 2222222333444556667778899999999999999999999999999999999999988

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=3.7e-34  Score=263.68  Aligned_cols=346  Identities=16%  Similarity=0.121  Sum_probs=245.0

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      ++++|.|+++      .+++.+++.++..+++++.|+++||+|||+++..+.++..++.++.+++++++.+++.|++.|+
T Consensus        22 ~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   95 (379)
T TIGR00881        22 VEEIGLSKTD------LGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGI   95 (379)
T ss_pred             HHHhCCCHhH------HHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            5788999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHH-HHHhHhccccccCCccccccccccCccchHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP-ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF  159 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  159 (420)
                      +.+...+. .+++.|++|+|+|++++++.+.+.++|..++| .+++.+.+       ..+||..|         ...++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~~  159 (379)
T TIGR00881        96 FQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE-------LYSWHWVF---------IVPGII  159 (379)
T ss_pred             hccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh-------cCCchhHH---------HHHHHH
Confidence            99988887 99999999999999999999999999999999 46666665       44555443         555544


Q ss_pred             HHH-HHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHH
Q 014682          160 AFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEI  238 (420)
Q Consensus       160 ~~~-~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (420)
                      .++ .++..+..||++++++.++++++.. ++.++..++++++.++.+...++++|+|.++...+..++..........+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (379)
T TIGR00881       160 AIIVSLICFLLLRDSPQSCGLPPAEEMPN-EEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDW  238 (379)
T ss_pred             HHHHHHHHheeeCCCccccccCccccCcc-cccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            444 3445556677655432221111111 00000000011111112223566788999888877777777766777778


Q ss_pred             HHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHH--HHHHHHHHHHHHHHhhhhH
Q 014682          239 FSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARIAGV--LTIPLLTSYPYIAMLSGFG  315 (420)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  315 (420)
                      .|.|..+.     .|+++.+.+...+...++.+++.+ +.+++.||. ++++.......  ..............  . .
T Consensus       239 ~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~  309 (379)
T TIGR00881       239 SPLYLTQE-----KGFSKEKASWAFTLYELGGLVGTL-LAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPA--A-N  309 (379)
T ss_pred             HHHHHHHH-----hCCCHHHHHHHHHHHHHHcchhHH-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcc--h-h
Confidence            88887655     789999999999999999999888 666666654 33332221111  11111111111001  1 1


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhh
Q 014682          316 LAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  380 (420)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  380 (420)
                       ........+..+.......+......+|..|+++|+++.|+.+....+++.++|.+.|.+.|..
T Consensus       310 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  373 (379)
T TIGR00881       310 -PLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF  373 (379)
T ss_pred             -HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Confidence             1112222333333344445556677889999999999999999999999999999999999987

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=1.5e-32  Score=256.34  Aligned_cols=350  Identities=14%  Similarity=0.119  Sum_probs=235.9

Q ss_pred             HHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHhhhhccchhhh-Hhhh
Q 014682           23 SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYA   93 (420)
Q Consensus        23 s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~-~~~i   93 (420)
                      ++.++++.+++++.|+++||+|||+++..+..+++++++++++++|++        .++++|+++|++.|...|. ..++
T Consensus        71 ~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~  150 (438)
T PRK09952         71 GVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLA  150 (438)
T ss_pred             HHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence            456677889999999999999999999999999999999999999987        5888999999999998887 9999


Q ss_pred             hhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHHHHHHhcccc
Q 014682           94 CEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET  173 (420)
Q Consensus        94 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~  173 (420)
                      .|++|+|+|++..+....+..+|.++++.+...+......      +  .+..++||.++++.+++.++........||+
T Consensus       151 ~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~------~--~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es  222 (438)
T PRK09952        151 VESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTD------E--QFLSWGWRIPFLFSIVLVLIALWVRNGMEES  222 (438)
T ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------H--HhhccChHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999998877776531110      0  0013456666677766655544445556776


Q ss_pred             cCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHH-HHHHHHhhhhhHHHHHHHhhcCcccCCcc
Q 014682          174 LHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSII-VYCVFSLHDMAYSEIFSLWANSPKKLGGL  252 (420)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (420)
                      +++.+++++.++                ++++....+.++|+|+.+.... ..++..........+.|.|..+.     +
T Consensus       223 ~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-----~  281 (438)
T PRK09952        223 AEFEQQQHEQAA----------------AKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQN-----L  281 (438)
T ss_pred             hhHHHHHhhccc----------------ccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----c
Confidence            643221100000                0001111223556666655443 23333333444555677766544     6


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhH
Q 014682          253 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSV  332 (420)
Q Consensus       253 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (420)
                      |++...........++...++.+ +.+++.||++||+....+.++..+....+...... . .....+....++.++...
T Consensus       282 g~s~~~~~~~~~~~g~~~~i~~~-~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~  358 (438)
T PRK09952        282 GLPRELFLNIGLLVGGLSCLTIP-CFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA-Q-SIFWIVFFSIMLANIAHD  358 (438)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHHHHH
Confidence            77776555555555666666665 67889999999988877765544433322221111 1 111112222233334444


Q ss_pred             HHHHHHHHHhhhcCCcchhhHHhhHHHHHH-HHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014682          333 SIITGLFILQNRAVDQDQRGAANGIAMTGM-SLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~  411 (420)
                      ...+..+++..|.+|++.|+++.|+.+... .+++.++|.+.+.+.|..++        +|...+...+++.+++.+..+
T Consensus       359 ~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~--------~~~~~~~~~~~~~~i~~v~~~  430 (438)
T PRK09952        359 MVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGG--------SWHSVAIYLLAGCLISAMTAL  430 (438)
T ss_pred             HHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CchHHHHHHHHHHHHHHHHHH
Confidence            556777889999999999999999976665 58999999999999986521        477778877777777766655


Q ss_pred             h
Q 014682          412 K  412 (420)
Q Consensus       412 ~  412 (420)
                      .
T Consensus       431 ~  431 (438)
T PRK09952        431 L  431 (438)
T ss_pred             H
Confidence            4

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=1.5e-32  Score=260.76  Aligned_cols=386  Identities=14%  Similarity=0.075  Sum_probs=245.2

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhh------------hhHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS------------VNFW   70 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~------------~~~~   70 (420)
                      ++++.++.+      .+++.+++.++..++++++|+++||+|||++++.+.+++.++.+.++++            ++++
T Consensus        48 ~~~~~~~~~------~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  121 (479)
T PRK10077         48 LSESAANSL------LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVP  121 (479)
T ss_pred             ccccCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHH
Confidence            345777788      9999999999999999999999999999999999999999998887763            2356


Q ss_pred             HHHHHHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhcccccc-CCccccccccccCcc
Q 014682           71 MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK-YPNLFSSESLFGKFP  148 (420)
Q Consensus        71 ~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~-~~~~~gw~~~~~~~~  148 (420)
                      .++++|+++|++.|...|. .++++|++|+|+|++++++.+.+..+|.++++.+++.+...... ...         .++
T Consensus       122 ~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~---------~~g  192 (479)
T PRK10077        122 EFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLN---------TDG  192 (479)
T ss_pred             HHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccc---------cCC
Confidence            7889999999999998887 99999999999999999999999999999998887766531110 001         234


Q ss_pred             chHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccc--hhHhhhhhhh------hhhhhhcCCCCchhhhccchhHHH
Q 014682          149 YFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDV--SYDALESASA------EVKEEEGREATPKKSLLKNWPLMS  220 (420)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  220 (420)
                      ||.++...++..++..+..+++||+|++...++++++.  ..++.....+      +..+..+++....+..+... ...
T Consensus       193 Wr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  271 (479)
T PRK10077        193 WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFG-VGV  271 (479)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchh-HHH
Confidence            55555676666666666677889988653222111111  0000000000      00000000000001111100 000


Q ss_pred             HHHHHHHHHhhhh----hHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 014682          221 SIIVYCVFSLHDM----AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  296 (420)
Q Consensus       221 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (420)
                      .........+...    ....+.|.+..      +.|.+....+......++..+++.+ +.+++.||++||+.+..+..
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~------~~g~~~~~~~~~~~~~~~~~~i~~~-~~g~l~dr~g~r~~~i~~~~  344 (479)
T PRK10077        272 IVIGVMLSVFQQFVGINVVLYYAPEIFK------TLGASTDIALLQTIIVGVINLTFTV-LAIMTVDKFGRKPLQIIGAL  344 (479)
T ss_pred             HHHHHHHHHHHHHhChhHHHHHHHHHHH------HcCCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHhcChHHHHHhHH
Confidence            1100001011000    11112233322      2577776667777777788888876 77788889999999998888


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHH
Q 014682          297 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL  376 (420)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l  376 (420)
                      +..++.+.+...........+ ...........+.....|..+.+++|.+|+++|+++.|+.+...+++..+++.+.+.+
T Consensus       345 ~~~v~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~  423 (479)
T PRK10077        345 GMAIGMFSLGTAFYTQAPGIV-ALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMM  423 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            887776665443221111111 1111122111222233477889999999999999999999999999999998887655


Q ss_pred             HHh--hhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhccC
Q 014682          377 FSW--AQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH  419 (420)
Q Consensus       377 ~~~--~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  419 (420)
                      .+.  ..+.      .++...|++.+++++++.++.+. ..||+|
T Consensus       424 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~  461 (479)
T PRK10077        424 DKNSWLVAH------FHNGFSYWIYGCMGVLAALFMWK-FVPETK  461 (479)
T ss_pred             Hhccchhhh------ccCccHHHHHHHHHHHHHHHHHh-ccccCC
Confidence            521  0000      16677888888777777766655 455543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=3.6e-33  Score=265.34  Aligned_cols=390  Identities=15%  Similarity=0.119  Sum_probs=245.0

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHhhhhccchhhh-H
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLGPI-K   90 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~-~   90 (420)
                      .+++.+.+.+++.++++++|+++||+|||+++..+.++..++.++++++++      ++.++++|+++|++.|...+. .
T Consensus        58 ~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~  137 (502)
T TIGR00887        58 SAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSA  137 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            789999999999999999999999999999999999999999999888765      789999999999999988886 9


Q ss_pred             hhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhcccccc-CCcc-----ccccc--cccCccchHHHHHHHHHHHH
Q 014682           91 AYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK-YPNL-----FSSES--LFGKFPYFLPCLCISLFAFG  162 (420)
Q Consensus        91 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~-~~~~-----~gw~~--~~~~~~~~~~~~~~~~~~~~  162 (420)
                      .+++|++|+|+|++++++......+|..+++.++..+...... +...     ..++.  .. .++||.++.+.+++.++
T Consensus       138 ~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~WR~~~~~~~ip~~i  216 (502)
T TIGR00887       138 IITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAV-DYMWRILIGFGAVPALL  216 (502)
T ss_pred             HHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchh-cccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998876531100 0000     00110  11 34688888888888887


Q ss_pred             HHHHHHhcccccCCCCCCCCcccchhHhhhhh---h-h-hhhh------hhcCCCCchhhhccc---hhHHHHHHH----
Q 014682          163 VTIAAFWLPETLHRHNDDDDSCDVSYDALESA---S-A-EVKE------EEGREATPKKSLLKN---WPLMSSIIV----  224 (420)
Q Consensus       163 ~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~~------~~~~~~~~~~~~~~~---~~~~~~~~~----  224 (420)
                      ..+..+++||+|++...+++++++..+...+.   + + +.++      +++.....+++++++   ++.+...+.    
T Consensus       217 ~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  296 (502)
T TIGR00887       217 ALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGS  296 (502)
T ss_pred             HHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHH
Confidence            77778899999997432222211111111110   0 0 0000      001111245566653   222121111    


Q ss_pred             HHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHH-----------H-HHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 014682          225 YCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVG-----------E-VLAITGFSLLVFQLSLYPFLERILGPIMVAR  292 (420)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (420)
                      .+.......+...+.|.++..      .|+++...+           . ......++.+++.+ +..++.||+|||+.+.
T Consensus       297 ~~~~~~~~y~~~~~~p~i~~~------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~-~~~~l~dr~gRR~~l~  369 (502)
T TIGR00887       297 WFLLDIAFYGVNLNQKVILSA------IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYW-VTVFLVDIIGRKPIQL  369 (502)
T ss_pred             HHHHHHHHHccccccHHHHHH------HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhcchhHHH
Confidence            111111111222223333321      344432211           1 12222334444544 7788999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhh
Q 014682          293 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG  372 (420)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~  372 (420)
                      .+..+..++.................  ........+...+..+..+.+.+|.+|++.|+++.|+.+.++.++++++|.+
T Consensus       370 ~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~  447 (502)
T TIGR00887       370 MGFFILTVLFFVLGFAYNHLSTHGFL--AIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFG  447 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhHHH--HHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHH
Confidence            87766666555444322111111111  1111111122333455667778999999999999999999999999999999


Q ss_pred             hhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhccC
Q 014682          373 GGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH  419 (420)
Q Consensus       373 ~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  419 (420)
                      .+.+.+..+.+.+.....++...|.+++++++++.++. + +.||++
T Consensus       448 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~-~lpEt~  492 (502)
T TIGR00887       448 FLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-L-LIPETK  492 (502)
T ss_pred             hhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-e-EeccCC
Confidence            99998853211000000145667888888887776654 3 457755

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=2.7e-33  Score=266.20  Aligned_cols=367  Identities=17%  Similarity=0.145  Sum_probs=248.7

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhhhccchhhh-Hhhh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYA   93 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~i   93 (420)
                      .+++.+++.++..++++++|+++||+|||++++.+.++..++.+++.++   .+++.+++.|+++|++.+...+. .+++
T Consensus        73 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i  152 (481)
T TIGR00879        73 WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYL  152 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHH
Confidence            9999999999999999999999999999999999999999999988654   44568999999999999988887 9999


Q ss_pred             hhhchhhhhhhHHHHHHHHhHHHHHHHHHHH---hHhccccccCCccccccccccCccchHHHHHHHHHHHHHHHHHHhc
Q 014682           94 CEIFREEHQALGLSTVSTAWGIGLIIGPALG---GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  170 (420)
Q Consensus        94 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~---~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (420)
                      .|++|+++|++++++.+.+.++|..+++.++   ....+       ..+||         ..+.+.++..++.++..+++
T Consensus       153 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-------~~~w~---------~~f~~~~~~~~~~~~~~~~l  216 (481)
T TIGR00879       153 SEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNN-------TLGWR---------IPLGLQLIPAGLLFLGLFFL  216 (481)
T ss_pred             HccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCC-------CccHH---------HHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999998   54444       34444         44466555555555666778


Q ss_pred             ccccCCCCCCCCcccc--hhHhh-----------h---hhhhhhhhhhcCCCCchhhhccc------hhHHHHHHHHHHH
Q 014682          171 PETLHRHNDDDDSCDV--SYDAL-----------E---SASAEVKEEEGREATPKKSLLKN------WPLMSSIIVYCVF  228 (420)
Q Consensus       171 ~e~~~~~~~~~~~~~~--~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  228 (420)
                      ||+++....+++.++.  ..++.           +   ......+.+.+.....+.+.++.      +.++...+..+..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (481)
T TIGR00879       217 PESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQ  296 (481)
T ss_pred             CCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence            8886532111111110  00000           0   00000000001111112333321      1222222222222


Q ss_pred             HhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 014682          229 SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYI  308 (420)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (420)
                      .........+.|.+...      .|++..+.+.......++.+++.+ +.+++.||.++|+.+..+..+..++.+.+...
T Consensus       297 ~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  369 (481)
T TIGR00879       297 FTGINAIMYYSPTIFEN------AGVSTDHAFLVSIIVGAVNFAFTF-VAIFLVDRFGRRPLLLIGAAGMAICLFVLGIL  369 (481)
T ss_pred             HhCCeehHHHHHHHHHH------cCCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            22222233344444322      578888888888888888888887 67888888999998888877666665555422


Q ss_pred             HHhhhh-----HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhc
Q 014682          309 AMLSGF-----GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKR  383 (420)
Q Consensus       309 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~  383 (420)
                      ......     .....+....+..+.......+....+..|.+|+++|+++.|+.+...+++++++|.+.+.+.+..   
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~---  446 (481)
T TIGR00879       370 GASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI---  446 (481)
T ss_pred             hhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            111111     022222223333333444455667778899999999999999999999999999999999999986   


Q ss_pred             cCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhcc
Q 014682          384 LDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQR  418 (420)
Q Consensus       384 ~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  418 (420)
                             ++...|++.+++++++.++.+. ..||+
T Consensus       447 -------~~~~~f~~~~~~~~~~~i~~~~-~~~~~  473 (481)
T TIGR00879       447 -------GVGGVFIFFGGLNVLGLIFVYF-FLPET  473 (481)
T ss_pred             -------CccceehhHHHHHHHHHHHHhe-ecccC
Confidence                   7888899988888888777665 44443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=3.2e-32  Score=252.26  Aligned_cols=336  Identities=19%  Similarity=0.163  Sum_probs=236.4

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhh--------hhHHHHH
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--------VNFWMAV   73 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~--------~~~~~l~   73 (420)
                      ++++|.|+.+      .|++.+++.+++.+++++.|+++||+|||++++.+.++.+++.+.+.++        .+++.++
T Consensus        43 ~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  116 (399)
T PRK05122         43 HDQLGFSAFL------AGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLL  116 (399)
T ss_pred             HHhcCccHHH------HHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHH
Confidence            4788999999      9999999999999999999999999999999999999888877766553        2577899


Q ss_pred             HHHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHH
Q 014682           74 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP  152 (420)
Q Consensus        74 ~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~  152 (420)
                      +.|+++|++.+...+. .+++.|++|+|+|++++++...+..+|.++||.+++.+.+       .+||+.         .
T Consensus       117 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~-------~~g~~~---------~  180 (399)
T PRK05122        117 LGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH-------WGGLAG---------L  180 (399)
T ss_pred             HHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH-------cccHHH---------H
Confidence            9999999999988887 8889999999999999999999999999999999999987       455543         3


Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhh
Q 014682          153 CLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHD  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      +.+..+..++..+.....|++++   +++ ++                      .+.++.+|+  .+.......+.....
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~----------------------~~~~~~~~~--~~~~~~~~~~~~~~~  232 (399)
T PRK05122        181 GLLIMLLALLGLLLARPRPAVPP---VKG-ER----------------------LPFRRVLGR--VWPYGMGLALASIGF  232 (399)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCC---CCc-cc----------------------hhHHHHHHH--HHHHHHHHHHHHHHH
Confidence            34444433332222222222211   100 00                      011112221  111111122222233


Q ss_pred             hhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014682          233 MAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS  312 (420)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (420)
                      .....+.+.|..+      .+.  .+.+......+++.+++++ ..+++.||.++|+....+..+..++.......++  
T Consensus       233 ~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~-~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--  301 (399)
T PRK05122        233 GTIATFITLYYAA------RGW--DGAALALTLFGVAFVGARL-LFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPS--  301 (399)
T ss_pred             HHHHHHHHHHHHH------ccc--ccchHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc--
Confidence            3344455665532      233  2345556666777777776 6677788889888887777766666555443221  


Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCc
Q 014682          313 GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGS  392 (420)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~  392 (420)
                         .+ ......++.+++.....+.......+..|+++||++.|+.+...++|..++|.+.|.+.+..          |+
T Consensus       302 ---~~-~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------g~  367 (399)
T PRK05122        302 ---PW-MALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF----------GY  367 (399)
T ss_pred             ---HH-HHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CH
Confidence               11 22233444455555666776777778899999999999999999999999999999999987          89


Q ss_pred             hHHHHHHHHHHHHHHHHHhh
Q 014682          393 QMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       393 ~~~f~~~~~~~~~~~~~~~~  412 (420)
                      +..|++.+++.+++.+....
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~  387 (399)
T PRK05122        368 PSIFLAAALAALLGLALTWL  387 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999988888887766655

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=1.1e-32  Score=262.37  Aligned_cols=348  Identities=15%  Similarity=0.176  Sum_probs=259.7

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      .+|+|.+.++      .+++.+.+.++..++.++.|+++||+|||++++.+.++..++.+++++++|++.+++.|+++|+
T Consensus        29 ~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~  102 (485)
T TIGR00711        29 AGDLGSSLSQ------VQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGF  102 (485)
T ss_pred             HHhcCCChhh------hhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHh
Confidence            5788999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...+. .+++.|++|+++|++++++......+|..+||.+++++.+       ..|||+.|         ...+...
T Consensus       103 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~~~w~~~f---------~~~~~~~  166 (485)
T TIGR00711       103 GGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE-------NYHWRWIF---------LINVPIG  166 (485)
T ss_pred             hhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc-------CcCceehh---------hhhhHHH
Confidence            99988887 9999999999999999999999999999999999999988       67777666         3444333


Q ss_pred             HHH-HHHHHhcccccCCCCCCCCcccchh---------Hhhhhhh-----------------------hhhhhhhcCCCC
Q 014682          161 FGV-TIAAFWLPETLHRHNDDDDSCDVSY---------DALESAS-----------------------AEVKEEEGREAT  207 (420)
Q Consensus       161 ~~~-~~~~~~l~e~~~~~~~~~~~~~~~~---------~~~~~~~-----------------------~~~~~~~~~~~~  207 (420)
                      ++. +...+.+||+++.++++.|......         ....+..                       ...++.+++++.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (485)
T TIGR00711       167 IIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPL  246 (485)
T ss_pred             HHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            333 3344556765433222111100000         0000000                       000111222333


Q ss_pred             chhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 014682          208 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  287 (420)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (420)
                      ...+++|+|+++...+..++..........+.|.|+.+.     .|+++.+.+....+..++.+++.+ +.+++.||.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~~r~~~  320 (485)
T TIGR00711       247 VDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQV-----LGYTALQAGLHILPVGLAPMLSSP-IAGRMGDKIDP  320 (485)
T ss_pred             cCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCc
Confidence            345688999988887777777777777777888888765     789999999999998999999887 67778888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHH
Q 014682          288 IMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKA  367 (420)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~  367 (420)
                      |+....+..+..++...+....... ...+ .......+.+++.....+.......+..|+++++++.|+.+..+++|+.
T Consensus       321 ~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~  398 (485)
T TIGR00711       321 RKLVTIGLILYAVGFYWRAFTFTPD-TPFL-AIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGS  398 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCC-CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHH
Confidence            9988888777766665544211111 1111 1222233444445555555566666778999999999999999999999


Q ss_pred             HhhhhhhHHHHh
Q 014682          368 AGPAGGGALFSW  379 (420)
Q Consensus       368 ~g~~~~g~l~~~  379 (420)
                      +|+.+.|.+.++
T Consensus       399 ig~~i~g~~~~~  410 (485)
T TIGR00711       399 IGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999874

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=100.00  E-value=1.9e-32  Score=251.98  Aligned_cols=346  Identities=12%  Similarity=0.050  Sum_probs=240.5

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL   82 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~   82 (420)
                      +|+|.++.+      .+++.+.+.+++.+.++++|+++||+|||++++.+..+.+++.+.+.++++.   ++.|+++|++
T Consensus        31 ~~~~~s~~~------~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~  101 (393)
T PRK11195         31 KELHYPDWS------QPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIG  101 (393)
T ss_pred             HHcCCcHHH------HHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            567777777      9999999999999999999999999999999999999999998888777664   7789999999


Q ss_pred             ccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHH
Q 014682           83 NGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAF  161 (420)
Q Consensus        83 ~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~  161 (420)
                      .+...|+ .+++.|++|+|+|++++++.+....+|.++||.+++++.+       ..          |+..+.+.+...+
T Consensus       102 ~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~-------~~----------~~~~~~i~~~~~~  164 (393)
T PRK11195        102 AAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD-------PH----------AEAALAVCALIYL  164 (393)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH----------HHHHHHHHHHHHH
Confidence            9999998 9999999999999999999999999999999999999987       11          3333344443333


Q ss_pred             HHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHHH
Q 014682          162 GVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSL  241 (420)
Q Consensus       162 ~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (420)
                      ...+..+.+||+++++++++++....   .++    .       ....++++++|.+........+............+.
T Consensus       165 ~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~----~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (393)
T PRK11195        165 LAALFNLFIPRLGARRPGQSWNPIAL---LRD----F-------FHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLA  230 (393)
T ss_pred             HHHHHHhcCCCCcccccccCCCHHHH---HHH----H-------HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445567887654322211111000   000    0       011346677777665554444433333444445566


Q ss_pred             hhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 014682          242 WANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLN  321 (420)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (420)
                      |.++.     +|.++.+.|......+++.+++++ ..+++.||.++++....+... ......+...    . ..+ ...
T Consensus       231 ~~~~~-----lg~s~~~~G~~~~~~~~g~i~g~~-~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~----~-~~~-~~~  297 (393)
T PRK11195        231 WAPVA-----LGITLNQPAYLQAVVAIGIAVGAG-AAARLVTLETVLRVLPAGILM-GLVVLLMALQ----H-SLL-PAY  297 (393)
T ss_pred             HHHHH-----cCCChhHHHHHHHHHHHHHHHHHH-HHHHHhcCCcccchHHHHHHH-HHHHHHHHHH----h-HHH-HHH
Confidence            66554     689999999999999999999988 556666666777666665432 2222222211    1 112 222


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhhcCCcch-hhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHH
Q 014682          322 CASVVKNLLSVSIITGLFILQNRAVDQDQ-RGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLN  400 (420)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~  400 (420)
                      ...++.+++.....+...+..++..|++. +|++.++.+..++++..++..+.+.+ +..          |.+..+.+.+
T Consensus       298 ~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~  366 (393)
T PRK11195        298 PLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKL----------GVPVVAVIVG  366 (393)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHc----------CCCHHHHHHH
Confidence            33334444555555666777777655554 79999999999999999999999866 444          6666777766


Q ss_pred             HHHHHHHHHHhh
Q 014682          401 VVEAIGVLMTFK  412 (420)
Q Consensus       401 ~~~~~~~~~~~~  412 (420)
                      +..+++..+.+.
T Consensus       367 ~~~~~~~~~~~~  378 (393)
T PRK11195        367 FGLLVALAMALL  378 (393)
T ss_pred             HHHHHHHHHHHH
Confidence            655555554443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=4.8e-32  Score=251.51  Aligned_cols=330  Identities=17%  Similarity=0.122  Sum_probs=243.8

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      ++|+|.|+++      .++..+.+.+++.+++++.|+++||+|||+++..+..+..++.+...++++++.+++.|+++|+
T Consensus        40 ~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  113 (406)
T PRK15402         40 VEDFNAGAEW------VPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGI  113 (406)
T ss_pred             HHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            5789999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...+. .+++.|.+|+++|.+..++......+|..++|.+++.+.+       ..+||+.|         .+.++..
T Consensus       114 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~-------~~~w~~~~---------~~~~~~~  177 (406)
T PRK15402        114 GLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH-------VLPWRGMF---------VLFAALA  177 (406)
T ss_pred             HhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccCccHHH---------HHHHHHH
Confidence            98887776 8999999999999999999988888999999999999987       55665544         4544444


Q ss_pred             HHHH-HHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014682          161 FGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       161 ~~~~-~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      ++.. ...+..||++++++++.+    .               ++.....++++|||+++...+..++.......+....
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~----~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (406)
T PRK15402        178 ALSFFGLWRAMPETAGRVGEKLS----L---------------KELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALS  238 (406)
T ss_pred             HHHHHHHHHhCCCCCcccccccc----H---------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4433 334556765432211100    0               0001234667889988877766665555445555556


Q ss_pred             HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014682          240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFL  319 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (420)
                      |.++.+.     +|+++.+.+.......++.+++.+ ..+++.||.++|+....+.....++...+.......... +..
T Consensus       239 p~~~~~~-----~g~~~~~~g~~~~~~~~~~~~g~~-~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~  311 (406)
T PRK15402        239 PVILISG-----EQLSSYEYGLLQVPVFGALIAGNL-TLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHA-YLW  311 (406)
T ss_pred             HHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHccccc-HHH
Confidence            7665544     688888888887777777777776 677788888999988888777766666555433211111 112


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhh
Q 014682          320 LNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  380 (420)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  380 (420)
                      ......+.+.+.....+........ .+++++|++.+..+..+.++..+|+.+.+.+++..
T Consensus       312 ~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~  371 (406)
T PRK15402        312 LTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG  371 (406)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            2233333334444444554444433 45589999999999999999999999999998876

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=1.7e-32  Score=255.36  Aligned_cols=347  Identities=14%  Similarity=0.060  Sum_probs=252.1

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL-----SVNFWMAVLTRF   77 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~   77 (420)
                      +|++.++.+      .|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+..+.     .++++.+++.|+
T Consensus        45 ~~~~~s~~~------~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  118 (417)
T PRK10489         45 QMMTGSTLQ------VGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGL  118 (417)
T ss_pred             HHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            456667777      999999999999999999999999999999999988887777665442     567899999999


Q ss_pred             Hhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHH
Q 014682           78 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI  156 (420)
Q Consensus        78 l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  156 (420)
                      ++|++.+...+. .+++.|++|+++|+++.++.....++|..+||.+++.+.+       ..+|++.+         ...
T Consensus       119 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~-------~~~~~~~~---------~~~  182 (417)
T PRK10489        119 WDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA-------AGGVAWNY---------GLA  182 (417)
T ss_pred             HHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH-------HHhhHHHH---------HHH
Confidence            999998887777 8999999999999999999999999999999999999987       45555443         455


Q ss_pred             HHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHH
Q 014682          157 SLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYS  236 (420)
Q Consensus       157 ~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (420)
                      ++..++..+..+.+||++++++++++   .. +              +..+..+..+|+|.++...+..++... .....
T Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~~~---~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  243 (417)
T PRK10489        183 AAGTFITLLPLLRLPALPPPPQPREH---PL-R--------------SLLAGFRFLLASPVVGGIALLGGLLTM-ASAVR  243 (417)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCccccc---ch-H--------------HHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHH
Confidence            55555555555667775433211110   00 0              001123456777777655544443332 23455


Q ss_pred             HHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 014682          237 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGL  316 (420)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (420)
                      .+.|.|..+.     +|.++.+.+.+.+..+++.+++.+ +.+++.||.++++.+..+..+..++.+.+...+.      
T Consensus       244 ~~~p~~~~~~-----~g~~~~~~g~~~~~~~~g~~ig~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------  311 (417)
T PRK10489        244 VLYPALADEV-----WQMGAAQIGLLYAAVPLGAALGAL-TSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPM------  311 (417)
T ss_pred             HhhHHHHHhc-----cCCChhHhHHHHHHHHHHHHHHHH-HHHHhhhccCcchHHHHHHHHHHHHHHHHHccch------
Confidence            5677777654     688899999999998999988887 6778888766666666666665555544433221      


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHH
Q 014682          317 AFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVF  396 (420)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f  396 (420)
                      +.......++.+.+.....+...++..+..|++.||++.|+.+...++|..+||.+.|.+.|..          |+...+
T Consensus       312 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~----------g~~~~~  381 (417)
T PRK10489        312 WILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM----------TPVASA  381 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh----------chhhHH
Confidence            1122233334444444555667788889999999999999999999999999999999999987          777777


Q ss_pred             HHHHHHHHHHHHHHhh
Q 014682          397 FVLNVVEAIGVLMTFK  412 (420)
Q Consensus       397 ~~~~~~~~~~~~~~~~  412 (420)
                      ...+++.++..++...
T Consensus       382 ~~~~~~~~~~~~~~~~  397 (417)
T PRK10489        382 SASGFGLLIIGVLLLL  397 (417)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7776665555444433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=100.00  E-value=1e-31  Score=246.90  Aligned_cols=337  Identities=15%  Similarity=0.153  Sum_probs=248.0

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      .+|+|.|+++      .|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+.+++++|++.++++|+++|+
T Consensus        33 ~~~~~~s~~~------~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  106 (381)
T PRK03633         33 LAQEHLPTWQ------VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGI  106 (381)
T ss_pred             HHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4688999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...|. .+.+.|..++++|+++++....+.++|..+||.+++.+.+       ...|     ...|+..    ....
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~~~~-----~~~~~~~----~~~~  170 (381)
T PRK03633        107 GCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST-------ELMS-----VLPWVTG----LVLA  170 (381)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------cccc-----hHHHHHH----HHHH
Confidence            98888776 7788888999999999999999999999999999999876       2111     1122211    1111


Q ss_pred             HHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHH
Q 014682          161 FGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFS  240 (420)
Q Consensus       161 ~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (420)
                      ....+.....+|+  ..+  ++                      +..+.++.+|+|.++......+...........+.|
T Consensus       171 ~~~~~~~~~~~~~--~~~--~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp  224 (381)
T PRK03633        171 AILPLLFTRILNQ--QAE--NH----------------------DSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMP  224 (381)
T ss_pred             HHHHHHHhcccCC--CCC--CC----------------------CCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111112211  100  00                      012234567777776544433333333444555677


Q ss_pred             HhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 014682          241 LWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLL  320 (420)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (420)
                      .|..+      .|.++.+.+...+...+..++++. ..+++.||+++|+.+..+.....++.....  ..   ....   
T Consensus       225 ~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~---~~~~---  289 (381)
T PRK03633        225 LYLNH------QGMSDASIGFWMALLVSAGILGQW-PIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ---AAMA---  289 (381)
T ss_pred             HHHHH------cCCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh---HHHH---
Confidence            77643      478888999999988889999987 667888888999888777666665544332  11   1111   


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHH
Q 014682          321 NCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLN  400 (420)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~  400 (420)
                       ....+.+.......|.......|..|+++++.+.+..+...++|..+||.+.|.+.|..          +++..|.+.+
T Consensus       290 -~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~----------g~~~~f~~~~  358 (381)
T PRK03633        290 -PALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY----------SDNLLFIMIA  358 (381)
T ss_pred             -HHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CccHHHHHHH
Confidence             11222233445667888888889899888888888888889999999999999999988          7888999988


Q ss_pred             HHHHHHHHHHhh
Q 014682          401 VVEAIGVLMTFK  412 (420)
Q Consensus       401 ~~~~~~~~~~~~  412 (420)
                      .+.++..+..++
T Consensus       359 ~~~l~~~~~~~~  370 (381)
T PRK03633        359 SVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHHHHHHHh
Confidence            888877666555

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=2.8e-32  Score=257.47  Aligned_cols=366  Identities=14%  Similarity=0.143  Sum_probs=256.1

Q ss_pred             cccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhhh
Q 014682            4 DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNFWMAVLTRFLLGS   81 (420)
Q Consensus         4 ~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~   81 (420)
                      |+|.+..+      .|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++.++  .+++.+++.|+++|+
T Consensus        70 ~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~  143 (465)
T TIGR00894        70 NFKWSGAL------QGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGL  143 (465)
T ss_pred             CCCCCHHH------hhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            78888888      9999999999999999999999999999999999999999998887654  568889999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCcc-ccccccccCccchHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL-FSSESLFGKFPYFLPCLCISLF  159 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~-~gw~~~~~~~~~~~~~~~~~~~  159 (420)
                      +.+...|. ..++.|++|+++|++++++...+..+|.+++|++++.+.+       . .|||..|         .+.++.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~-------~~~gw~~~f---------~i~~~~  207 (465)
T TIGR00894       144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCE-------SWGGWPMIF---------YVFGIV  207 (465)
T ss_pred             hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccCCCCeeh---------hhhhHH
Confidence            99999987 9999999999999999999999999999999999999987       4 3666655         555665


Q ss_pred             HHHHHHHH-HhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHH
Q 014682          160 AFGVTIAA-FWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEI  238 (420)
Q Consensus       160 ~~~~~~~~-~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (420)
                      .++..+.+ ...+|+|+.+++.+++   +++..++..++ ++++++.+..++++++++.++...+..++.......+.++
T Consensus       208 ~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (465)
T TIGR00894       208 GCAWSLLWFVFPADDPSIHPCISKF---EKKYINSSLQG-QKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTY  283 (465)
T ss_pred             HHHHHHHHHHHhcCCcccCCCCCHH---HHHHHHhhccc-ccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55544444 3445555433221111   11111111000 1111122345788999999999988888888877777888


Q ss_pred             HHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH-----H---HHHHHHHHHHHHHHHHHHH
Q 014682          239 FSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV-----A---RIAGVLTIPLLTSYPYIAM  310 (420)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~  310 (420)
                      .|.|+.+.     +|++..+.+...+...++..++.+ +.+++.||.++|+.     .   ..+..........+.. ..
T Consensus       284 lp~~l~~~-----~g~s~~~~g~~~~~~~~~~~i~~~-~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  356 (465)
T TIGR00894       284 LPTFISWV-----LRVSGKENGLLSSLPYLFAWLCSI-FAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYAL-PY  356 (465)
T ss_pred             HHHHHHHH-----hCcChHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            89888665     789999999999988899988887 67777776543211     1   1111111111111111 11


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCC
Q 014682          311 LSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLP  390 (420)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~  390 (420)
                      ... .... ......+.+.+.....+.......+..| +.+|.+.|+.+..+.+++.++|.+.|.+.+....       .
T Consensus       357 ~~~-~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~-------~  426 (465)
T TIGR00894       357 LSA-AFYL-TIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSK-------N  426 (465)
T ss_pred             cCC-chHH-HHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCc-------h
Confidence            011 1111 1112222222223333444444556454 6999999999999999999999999988775311       1


Q ss_pred             CchHHHHHHHHHHHHHHHHHhh
Q 014682          391 GSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       391 g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      +|...|.+.+++.+++.++...
T Consensus       427 ~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       427 VWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHeee
Confidence            5888999999888888776654

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=1.5e-31  Score=246.08  Aligned_cols=343  Identities=15%  Similarity=0.123  Sum_probs=245.0

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-MGTASVVIFNTLFGLSVNFWMAVLTRFLLG   80 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G   80 (420)
                      ++++|.|+.+      .|++.+++.+...+.+++.|+++||+||||.++ .+.....++.+++++++|++.+++.|+++|
T Consensus        25 ~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g   98 (375)
T TIGR00899        25 SEEVRARPAM------IGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLS   98 (375)
T ss_pred             HcccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            5789999999      999999999999999999999999999988765 456666777888899999999999999999


Q ss_pred             hhccchhhh-HhhhhhhchhhhhhhH--HHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHH
Q 014682           81 SLNGLLGPI-KAYACEIFREEHQALG--LSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS  157 (420)
Q Consensus        81 ~~~g~~~~~-~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  157 (420)
                      .+.+...|. .+++.|+.|+++|.+.  .+....+.++|.++||++++.+.+       .+|||..         +.+.+
T Consensus        99 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~-------~~~~~~~---------f~~~~  162 (375)
T TIGR00899        99 SFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL-------GFGFTVM---------FLTAA  162 (375)
T ss_pred             hhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH-------hcccHHH---------HHHHH
Confidence            877777776 8888998887777754  578888899999999999999987       4555544         46666


Q ss_pred             HHHHHHH-HHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHH
Q 014682          158 LFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYS  236 (420)
Q Consensus       158 ~~~~~~~-~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (420)
                      +..++.. +.++.+||+|++++++++                       ..+.++.+++|+++......++.........
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (375)
T TIGR00899       163 LAFVLCGVLVWLFLPSYPRGAPGALT-----------------------RLEVRGLLASRDTRLLFVACTLMWGCNILYI  219 (375)
T ss_pred             HHHHHHHHHHHHhCCCcccCcccccC-----------------------cchhhhhhcCcchHHHHHHHHHHHHHHHHHH
Confidence            6555443 344567876543221100                       0112235566666655444444333333444


Q ss_pred             HHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 014682          237 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGL  316 (420)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (420)
                      ...|.|..+.     +|.++.+.+...........++.. ..+++.||.++|+....+.....+........+     ..
T Consensus       220 ~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-----~~  288 (375)
T TIGR00899       220 INMPLLIIHE-----LGLPDKLAGLMMGTAAGLEIPFML-LAGYLIKRFGKRRLMLLAALAGVAFYTGLAADN-----SL  288 (375)
T ss_pred             hhhHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH-----HH
Confidence            4566666444     688888888887776666666665 677888888999887776655444333322211     11


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHH
Q 014682          317 AFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVF  396 (420)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f  396 (420)
                      + .......+.++......+.......|..| ++++++.++.+...++|..++|.+.|.+.|..          |++..|
T Consensus       289 ~-~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~----------g~~~~~  356 (375)
T TIGR00899       289 W-ALLMLQLLNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGILAERW----------SYHAVY  356 (375)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------cchhHH
Confidence            2 12223333344445556677777888776 56779999999999999999999999999987          889999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 014682          397 FVLNVVEAIGVLMTFK  412 (420)
Q Consensus       397 ~~~~~~~~~~~~~~~~  412 (420)
                      .+.+++.+++.++..+
T Consensus       357 ~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       357 WFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHHHhe
Confidence            9988888877766543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=100.00  E-value=9.2e-32  Score=248.08  Aligned_cols=346  Identities=17%  Similarity=0.192  Sum_probs=250.1

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      ++++|.|+.+      .|++.+...++..+.+++.|+++||+|||+++..+.++..++.+.+.++++++.+++.|+++|+
T Consensus        38 ~~~~g~s~~~------~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~  111 (400)
T PRK11646         38 VDQLGWAAVM------VGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGL  111 (400)
T ss_pred             HHHhCCcHHH------HHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4678888888      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...|. .+++.|++|+|+|++++++.....++|..+||.+++.+.+        .|||+.|         .+.++..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~--------~g~~~~f---------~~~~~~~  174 (400)
T PRK11646        112 GGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ--------YDFRLVC---------ATGAVLF  174 (400)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhHHHHH---------HHHHHHH
Confidence            98888887 8999999999999999999999999999999999999974        3555444         4544444


Q ss_pred             HHH-HHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014682          161 FGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       161 ~~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      ++. ++..+.+||.++.   ++  .+                  +..+..++++|+|+++...+..+...........+.
T Consensus       175 ~~~~i~~~~~~~~~~~~---~~--~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (400)
T PRK11646        175 VLAAAFNAWLLPAYKLS---TV--RT------------------PVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLML  231 (400)
T ss_pred             HHHHHHHHHhCCccccc---cc--ch------------------hhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhh
Confidence            433 2334455543211   00  00                  011234567888887765554444333333334456


Q ss_pred             HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014682          240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFL  319 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (420)
                      |.|..+.      +.++.+.+.+.+..++..........++.+||.+.++....+..+..++...+...+.     .+. 
T Consensus       232 p~~~~~~------~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~-  299 (400)
T PRK11646        232 PIMVNDI------AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN-----LQQ-  299 (400)
T ss_pred             hhhHHhh------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh-----HHH-
Confidence            6665442      3466788888888777777666667788888777666666666555555544433221     111 


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHH
Q 014682          320 LNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVL  399 (420)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~  399 (420)
                      ......+.+.+.....|...++..+..|+++||+++|+.+...++|..+||.+.|.+.|..++..      .....|...
T Consensus       300 ~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~------~~~~~~~~~  373 (400)
T PRK11646        300 LFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALN------QPELPWMML  373 (400)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcC------CcchHHHHH
Confidence            22222333344456667888899999999999999999999999999999999999999864321      245566666


Q ss_pred             HHHHHHHHHHHh
Q 014682          400 NVVEAIGVLMTF  411 (420)
Q Consensus       400 ~~~~~~~~~~~~  411 (420)
                      +.+.+++.+...
T Consensus       374 ~~~~~~~~~~~~  385 (400)
T PRK11646        374 GIIGLITLLALY  385 (400)
T ss_pred             HHHHHHHHHHHH
Confidence            666666655443

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=1.9e-31  Score=252.41  Aligned_cols=349  Identities=15%  Similarity=0.137  Sum_probs=255.1

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      .+|+|.++.+      .+++.+.+.++..++.+++|+++||+|||++++.+..+.+++.+.+.++++++.+++.|+++|+
T Consensus        37 ~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~  110 (471)
T PRK10504         37 AQSLGESPLH------MHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGV  110 (471)
T ss_pred             HHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            4678999989      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...|. .+++.|++|+++|+++.++.....++|..+||.+++.+.+       ..|||+.|         .......
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~-------~~gw~~~f---------~~~~~~~  174 (471)
T PRK10504        111 GGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE-------YASWHWIF---------LINIPVG  174 (471)
T ss_pred             hhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-------hccHHHHH---------HHHHHHH
Confidence            99998887 8999999999999999999999999999999999999998       55666555         4444333


Q ss_pred             HHH-HHHHHhcccccCCCCCCCCcccchhHh---------hhhhh----------------------hhhhhhhcCCCCc
Q 014682          161 FGV-TIAAFWLPETLHRHNDDDDSCDVSYDA---------LESAS----------------------AEVKEEEGREATP  208 (420)
Q Consensus       161 ~~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~---------~~~~~----------------------~~~~~~~~~~~~~  208 (420)
                      .+. +......|+.+.... +.+........         ..+..                      ...++++++++..
T Consensus       175 ~l~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (471)
T PRK10504        175 IIGAIATLMLMPNYTMQTR-RFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALF  253 (471)
T ss_pred             HHHHHHHHHhCCCccccCC-CCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            333 233344454432211 11111000000         00000                      0001112222233


Q ss_pred             hhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 014682          209 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  288 (420)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (420)
                      ..+++|||+++......++............|+|.+..     .|.++.+.+.......+..+++.. +.+++.||+++|
T Consensus       254 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~-~~~~l~~r~g~~  327 (471)
T PRK10504        254 SLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIG-----LGFSPFHAGLMMIPMVLGSMGMKR-IVVQVVNRFGYR  327 (471)
T ss_pred             CHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCch
Confidence            44688999998887777776666666666777777654     688999999998887777777766 667788888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHH
Q 014682          289 MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAA  368 (420)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~  368 (420)
                      +.+..+..+..+....+.......  ..+ ......+..+.+.....+.......+..|++++++++|+.++...+|..+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i  404 (471)
T PRK10504        328 RVLVATTLGLALVSLLFMLVALLG--WYY-LLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSI  404 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccc--cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHH
Confidence            998888776666655544432111  111 11222333334455566777788888899999999999999999999999


Q ss_pred             hhhhhhHHHHhhhh
Q 014682          369 GPAGGGALFSWAQK  382 (420)
Q Consensus       369 g~~~~g~l~~~~~~  382 (420)
                      |+.+.|.+.+..+.
T Consensus       405 g~~i~g~ll~~~g~  418 (471)
T PRK10504        405 GVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999998753

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=1.1e-31  Score=247.70  Aligned_cols=341  Identities=13%  Similarity=0.144  Sum_probs=249.1

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      ++|+|+|+++      .+++.+.+.+++.+++++.|++.||+|||+++..+.++..++.++.+++++++.+++.|+++|+
T Consensus        34 ~~~~~~s~~~------~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~  107 (394)
T PRK03699         34 AEYFNLPVSS------MSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGV  107 (394)
T ss_pred             HHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence            5789999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...+. .+++.|++|+++|+++++..+...++|..++|.+.+.+.+.      ..|||+.|         ...++..
T Consensus       108 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~gw~~~f---------~~~~~~~  172 (394)
T PRK03699        108 VSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR------SIEWYWVY---------ACIGLVY  172 (394)
T ss_pred             hhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cccHHHHH---------HHHHHHH
Confidence            98887776 88999999999999999999999999999999998887641      34555444         5555554


Q ss_pred             HHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHH
Q 014682          161 FGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFS  240 (420)
Q Consensus       161 ~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (420)
                      ++..+..++ ++.|+.++++++   +.              ++.    .++ ..++.++...+..++..........+.|
T Consensus       173 ~~~~~~~~~-~~~p~~~~~~~~---~~--------------~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p  229 (394)
T PRK03699        173 VAIFILTLF-SEFPALGKHAPK---AD--------------KPV----AKE-KWGIGVLFLAIAALLYILAQLTFISWVP  229 (394)
T ss_pred             HHHHHHHHh-cCCccccccCcc---cc--------------Ccc----ccc-cCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443333322 222221111000   00              000    011 1245555555555555555566677888


Q ss_pred             HhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 014682          241 LWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLL  320 (420)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (420)
                      .|+.+.     +|+++.+.+.+.+...++..++++ ..+++.||+++|+.+.....+..+....+....   + ..+  .
T Consensus       230 ~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~---~-~~~--~  297 (394)
T PRK03699        230 EYAQKK-----FGMSLEDAGNLVSNFWMAYMVGMW-IFSFIVRFFDLQRILTVLAGLALVLMYLFVNTD---D-PSH--L  297 (394)
T ss_pred             HHHHHH-----cCCChHHhhHHHHHHHHHHHHHHH-HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcC---C-chH--H
Confidence            888655     789999999999998888889887 778888999998887776655554443332211   1 111  2


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHH
Q 014682          321 NCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLN  400 (420)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~  400 (420)
                      ....+..++......+...+...+..| +++++..|......++|..++|.+.|.+.|..          |++..++..+
T Consensus       298 ~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~----------g~~~~~~~~~  366 (394)
T PRK03699        298 LYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHF----------GLQAALLTAN  366 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh----------CchhhhhhhH
Confidence            223333444555566666667777555 55678888999999999999999999999987          7888888777


Q ss_pred             HHHHHHHHH
Q 014682          401 VVEAIGVLM  409 (420)
Q Consensus       401 ~~~~~~~~~  409 (420)
                      ++.+++.+.
T Consensus       367 ~~~~~~~~~  375 (394)
T PRK03699        367 GLYAVVFVM  375 (394)
T ss_pred             HHHHHHHHH
Confidence            777666443

>PRK12382 putative transporter; Provisional

Probab=100.00  E-value=9.8e-32  Score=248.36  Aligned_cols=336  Identities=16%  Similarity=0.133  Sum_probs=232.9

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhh--------hhhHHHHH
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL--------SVNFWMAV   73 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~--------~~~~~~l~   73 (420)
                      ++|+|.|+++      .|++.+++.+++.++++++|+++||+||||+++.+.+...++.+....        .++++.++
T Consensus        43 ~~~lg~s~~~------~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  116 (392)
T PRK12382         43 HHDLGFGNTM------VGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLV  116 (392)
T ss_pred             HHhcCCcHHH------HHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHH
Confidence            4789999999      999999999999999999999999999999999988877766543321        36889999


Q ss_pred             HHHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHH
Q 014682           74 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP  152 (420)
Q Consensus        74 ~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~  152 (420)
                      +.|+++|++.+...+. .+++.|++|+|+|++++++.+.+.+.|..++|++++.+.+       ..|||         ..
T Consensus       117 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~-------~~g~~---------~~  180 (392)
T PRK12382        117 VGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS-------HFGFA---------AL  180 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh-------ccChH---------HH
Confidence            9999999999888786 8899999999999999999999999999999999999987       44444         33


Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhh
Q 014682          153 CLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHD  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      +.+..+..++........||.+++   ++ +++                      +.++..|  .++...+...+.....
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~----------------------~~~~~~~--~~~~~~~~~~l~~~~~  232 (392)
T PRK12382        181 ALTTMVLPLLAWAFNGTVRKVPAH---AG-ERP----------------------SLWSVVG--LIWKPGLGLALQGVGF  232 (392)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCC---cc-cCc----------------------hHHHHHH--HHHHhHHHHHHHHHHH
Confidence            333333322222222222332111   00 000                      0111111  1111111111222222


Q ss_pred             hhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014682          233 MAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS  312 (420)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (420)
                      .....+.+.|+.+      .+++.  .+......+++.+++++ ..+++.||.++|+.+..+..+..++........   
T Consensus       233 ~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~---  300 (392)
T PRK12382        233 AVIGTFVSLYFAS------KGWAM--AGFTLTAFGGAFVLMRV-LFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP---  300 (392)
T ss_pred             hHHHHHHHHHHHh------cCCch--hHHHHHHHHHHHHHHHH-HHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc---
Confidence            3334455555543      23432  45555666677777776 667778888998888877777666655544322   


Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCc
Q 014682          313 GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGS  392 (420)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~  392 (420)
                      +  .+ .......+.+.......+.......+..|+++||++.|+.+...++|+.++|.+.|.+.|..          ||
T Consensus       301 ~--~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~----------g~  367 (392)
T PRK12382        301 T--AW-VALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF----------GY  367 (392)
T ss_pred             c--HH-HHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------Cc
Confidence            1  11 12233334444555566777778888899999999999999999999999999999999988          89


Q ss_pred             hHHHHHHHHHHHHHHHHHhh
Q 014682          393 QMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       393 ~~~f~~~~~~~~~~~~~~~~  412 (420)
                      +..|.+.+.+.+++.+..+.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        368 PSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHh
Confidence            99999999888888776655

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=2.7e-32  Score=255.19  Aligned_cols=375  Identities=14%  Similarity=0.028  Sum_probs=252.0

Q ss_pred             cccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHh
Q 014682            4 DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS----VNFWMAVLTRFLL   79 (420)
Q Consensus         4 ~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~   79 (420)
                      |+|.++++      .+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.++.    ++++.+.+.|++.
T Consensus        55 ~~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  128 (438)
T TIGR00712        55 EQGFSKGE------LGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLN  128 (438)
T ss_pred             HcCCCHhH------hHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence            45889999      9999999999999999999999999999999999999999998887764    4678888999999


Q ss_pred             hhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHH
Q 014682           80 GSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISL  158 (420)
Q Consensus        80 G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  158 (420)
                      |++.+...+. ...+.|++|+|+|++++++.+.+.++|..++|.+.+...+.      ..+||..|         ...++
T Consensus       129 g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~------~~~w~~~f---------~~~~~  193 (438)
T TIGR00712       129 GWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW------FNDWHAAL---------YFPAI  193 (438)
T ss_pred             HHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH------hhhhHHHH---------HHHHH
Confidence            9998887775 88899999999999999999999999999998887765431      24555444         56555


Q ss_pred             HHHH-HHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCC-chhhhccchhHHHHHHHHHHHHhhhhhHH
Q 014682          159 FAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT-PKKSLLKNWPLMSSIIVYCVFSLHDMAYS  236 (420)
Q Consensus       159 ~~~~-~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (420)
                      ..++ .+...+++||++++.+.++.++.+. +..++.. ++++++.+.+. ..+.++|++.++...+..++.........
T Consensus       194 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (438)
T TIGR00712       194 CAIIVALFAFAMMRDTPQSCGLPPIEEYRN-DYPDDYN-EKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVL  271 (438)
T ss_pred             HHHHHHHHHHHhccCCHHhcCCCCchhccc-ccccccc-cccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHH
Confidence            5554 3445566787765422111110000 0000000 00000000000 11246788988887776666665556667


Q ss_pred             HHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 014682          237 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGL  316 (420)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (420)
                      ++.|.|+.+.     .|+++.+.+....+..+..+++++ ..+++.||.++++....+.................+....
T Consensus       272 ~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (438)
T TIGR00712       272 DWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNP  345 (438)
T ss_pred             HhHHHHHHHc-----cCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCch
Confidence            7888888765     688999999999888888999887 7778888875432222222222111111111000000011


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHH-HHhhhhhhHHHHhhhhccCCCCCCCchHH
Q 014682          317 AFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFK-AAGPAGGGALFSWAQKRLDASFLPGSQMV  395 (420)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~~g~~~~g~l~~~~~~~~~~~~~~g~~~~  395 (420)
                      +. .....+..+....+..........|.+|+++||++.|+.+...++++ +++|.+.|.+.|..          |++..
T Consensus       346 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~----------g~~~~  414 (438)
T TIGR00712       346 LV-DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF----------GWDGG  414 (438)
T ss_pred             HH-HHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhc----------cchHH
Confidence            11 11111111221112222223456788999999999999999988875 68999999999987          88999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccC
Q 014682          396 FFVLNVVEAIGVLMTFKPFLAQRH  419 (420)
Q Consensus       396 f~~~~~~~~~~~~~~~~~~~~~~~  419 (420)
                      |.+..++.+++.+.... ..+|+|
T Consensus       415 ~~~~~~~~~~~~~~~~~-~~~~~~  437 (438)
T TIGR00712       415 FMVMIGGSILAVILLIV-VMIGEK  437 (438)
T ss_pred             HHHHHHHHHHHHHHHHH-HHhhcc
Confidence            99888888888777777 666665

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=2.2e-32  Score=249.31  Aligned_cols=325  Identities=26%  Similarity=0.379  Sum_probs=243.5

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      .+|+|.|+++      .+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..+++|++.+++.|++.|+
T Consensus        24 ~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~   97 (352)
T PF07690_consen   24 AEELGLSPSQ------IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGI   97 (352)
T ss_dssp             HCCSTTTSHC------HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccc
Confidence            5789999999      9999999999999999999999999999999999999999997777677888899999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...+. .+++.|++|+|+|++++++.....++|.+++|.+++.+.+       ..+||+.|         .+.++..
T Consensus        98 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~-------~~~~~~~~---------~~~~~~~  161 (352)
T PF07690_consen   98 GSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS-------YFGWRWAF---------LISAILS  161 (352)
T ss_dssp             HHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HCHHCCHH---------HHHHHHH
T ss_pred             ccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh-------cccccccc---------ccccchh
Confidence            99988887 9999999999999999999999999999999999999997       56666555         5666655


Q ss_pred             HHHHH-HHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCC-chhhhccchhHHHHHHHHHHHHhhhhhHHHH
Q 014682          161 FGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT-PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEI  238 (420)
Q Consensus       161 ~~~~~-~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (420)
                      ++..+ ...++++++++++++++++++.             +++++.. ..+.+.++|.+|......++..........+
T Consensus       162 ~~~~il~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (352)
T PF07690_consen  162 LIAAILFILFLPEPPPPRERESPKESES-------------KKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFF  228 (352)
T ss_dssp             HHHHHHHHCCC---STTTT--SSTTTT---------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHhhhhhhccccccccccccccc-------------ccccccccccccccccchhhhhhhhhhHHHHHHHHhhcc
Confidence            55433 3355565555444333222210             0111112 3567777777765555555555555667777


Q ss_pred             HHHhhcCcccCCccCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 014682          239 FSLWANSPKKLGGLNYS-TQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLA  317 (420)
Q Consensus       239 ~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (420)
                      .|.|..+.     +|++ ..+.+......++...++++ +.+++.||.++++..........+....+........   .
T Consensus       229 ~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  299 (352)
T PF07690_consen  229 LPLYLQEV-----LGFSGPSQAGLLFSIFGIVGIIGSL-LAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSS---P  299 (352)
T ss_dssp             HHHHCCHH-----HHCCTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCH---H
T ss_pred             cchhhhhc-----cCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhh---H
Confidence            88775555     7888 78999999999999999877 6667778888777766666666655555544433211   1


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhh
Q 014682          318 FLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP  370 (420)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~  370 (420)
                      ........+.+++.....+.......+..|++++|++.|+.+...++++.+||
T Consensus       300 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  300 VWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            12222344455566677889999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=6.9e-31  Score=243.01  Aligned_cols=352  Identities=14%  Similarity=0.175  Sum_probs=245.7

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHh---h-hhhHHHHHHHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---L-SVNFWMAVLTRFL   78 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l   78 (420)
                      +|+|.|+++      .|++.+.+.+++.+++++.|++.||+||||++..+..+.+++.+++.   . .++++.+++.|++
T Consensus        41 ~~~g~s~~~------~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i  114 (402)
T TIGR00897        41 KALGLSPQQ------SASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGI  114 (402)
T ss_pred             HHhCCCHHH------hHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHH
Confidence            678999999      99999999999999999999999999999999999999988876553   3 3578889999999


Q ss_pred             hhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHH-HHHHHHHhHhccccccCCccccccccccCccchHHHHHH
Q 014682           79 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGL-IIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI  156 (420)
Q Consensus        79 ~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  156 (420)
                      +|++.+...+. .+.+.|++|+|+|++++|+...+.++|. .++|.+++.+.+       .+||+..+    |+..... 
T Consensus       115 ~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~-------~~g~~~~~----~~~~~~~-  182 (402)
T TIGR00897       115 RGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP-------AFGEMNTL----WSALAFV-  182 (402)
T ss_pred             HHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------ccchHHHH----HHHHHHH-
Confidence            99998777666 7888999999999999999999999997 689999999887       56654332    3322211 


Q ss_pred             HHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHH
Q 014682          157 SLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYS  236 (420)
Q Consensus       157 ~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (420)
                         .+..++..+..+|.+++++++ ++ ++.               ++..+..++++|+|+++...+..++.........
T Consensus       183 ---~~~~~~~~~~~~~~~~~~~~~-~~-~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (402)
T TIGR00897       183 ---LTGGVIALFSNKDIFTPQHMQ-TR-EKF---------------SELGKAATILFTNPNVLLGGMVRIINTIGLFGFA  242 (402)
T ss_pred             ---HHHHHHHHhccCCCCCccccc-CC-cch---------------hhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHH
Confidence               111222233344432211110 00 000               0001124568899998887777766666666667


Q ss_pred             HHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH-HHHHHHHHHHHHHHHHHHhhhhH
Q 014682          237 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR-IAGVLTIPLLTSYPYIAMLSGFG  315 (420)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  315 (420)
                      ++.|.|..+      +|++..+.+.......++..++.+ ..+++.||.++|+... .+.+...+....+..........
T Consensus       243 ~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~  315 (402)
T TIGR00897       243 VFLPMFVAE------LGFSTSEWLQIWGTFFFTNIVFNV-IFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHS  315 (402)
T ss_pred             HHHHHHHHH------cCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            778877643      588888888888888889999988 6677888888777653 22222223222222221110111


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHH
Q 014682          316 LAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMV  395 (420)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~  395 (420)
                      .+ ......+..+.+.....+. .....+ .+|++||++.|+.+...++++.++|.+.|.+.|..          |+...
T Consensus       316 ~~-~~~~~~~~~G~~~~~~~~~-~~~~~~-~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~----------g~~~~  382 (402)
T TIGR00897       316 FA-VALIIAIALGIFLAGYVPL-AAVFPT-LAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF----------GAIGV  382 (402)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHH-HHHHHh-hCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------chHHH
Confidence            11 1222333333333344343 445566 45679999999999999999999999999999987          88899


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 014682          396 FFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       396 f~~~~~~~~~~~~~~~~  412 (420)
                      +++.+++.+++.++..+
T Consensus       383 ~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       383 VWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999888887776655

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=4.8e-31  Score=243.52  Aligned_cols=325  Identities=17%  Similarity=0.155  Sum_probs=240.2

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      ++|+|.|+++      .+++.+++.++..+++++.|+++||+|||+++..+.++..++.+...++++++.+++.|++.|+
T Consensus        32 ~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  105 (385)
T TIGR00710        32 AADLSTPASI------VQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAF  105 (385)
T ss_pred             HHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            5789999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...+. .+++.|++|+|+|++++++.+....+|..++|.+++.+.+       ..+||..         +...++..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~~~~~~~---------~~~~~~~~  169 (385)
T TIGR00710       106 GASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV-------WLSWHAI---------FAFLSLAG  169 (385)
T ss_pred             chhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCHHHH---------HHHHHHHH
Confidence            99988887 9999999999999999999999999999999999999987       4455443         35555544


Q ss_pred             HHH-HHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014682          161 FGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       161 ~~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      ++. +...+..||+++++++++  .+                  +..+..++.+|+|+++...+...+............
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~--~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (385)
T TIGR00710       170 ILLSALIFFILPETLPYEARIQ--IS------------------TYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGA  229 (385)
T ss_pred             HHHHHHHHHhCCCCCCCcccCC--HH------------------HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcC
Confidence            443 334455666543321100  00                  001224567788888776666555554444555555


Q ss_pred             HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014682          240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFL  319 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (420)
                      |.+..+.     +|+++.+.+.......++.+++++ +.+++.||.++|+....+..+..++...+........ ..+..
T Consensus       230 ~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  302 (385)
T TIGR00710       230 PFVYIDI-----MGVSPSVFGLLFALNIIAMIFGGF-LNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGL-GSWAM  302 (385)
T ss_pred             hHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcc-chHHH
Confidence            6555433     788999999999998988888887 6777888889998888777666665555443322111 11222


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHH
Q 014682          320 LNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL  376 (420)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l  376 (420)
                      ......+.+.+.....+.......|..| ++++++.++.+.....++.+.+.+.+.+
T Consensus       303 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~  358 (385)
T TIGR00710       303 IIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI  358 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2333344445555666777777777665 7899999999988877666666666633

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=6.2e-31  Score=243.46  Aligned_cols=347  Identities=15%  Similarity=0.146  Sum_probs=242.6

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      .+++|.+.++      .++..+++.+++.++++++|+++||+|||++++.+..+++++.+++.+++|++.++++|+++|+
T Consensus        43 ~~~~~~~~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi  116 (413)
T PRK15403         43 VRDFNADVSL------APASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGT  116 (413)
T ss_pred             HHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4688888888      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...+. ..++.|++|+++|++++++......+|..+||.+++.+.+       ..|||+.|         .+.++..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~-------~~gw~~~f---------~~~~~~~  180 (413)
T PRK15403        117 SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH-------FVHWKVLF---------AIIAVMG  180 (413)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCHHHHH---------HHHHHHH
Confidence            88766666 7889999999999999999999999999999999999987       45665554         5655555


Q ss_pred             HHHHH-HHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014682          161 FGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       161 ~~~~~-~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      ++..+ ..+.+||++++++++.   + .               ++..+..++++|||+++...+...+.......+....
T Consensus       181 ~i~~~~~~~~lp~~~~~~~~~~---~-~---------------~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~  241 (413)
T PRK15403        181 LIAFVGLLLAMPETVKRGAVPF---S-A---------------KSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVS  241 (413)
T ss_pred             HHHHHHHHHhCCCCccccCCCC---C-h---------------HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            55433 3556788654221110   0 0               0001235678899999988777776666666666667


Q ss_pred             HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014682          240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFL  319 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (420)
                      |.++.+.     .|+++.+.+........+.++++.+...+..|+.++|. .........++............ ..+..
T Consensus       242 P~~l~~~-----~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~~~~ig~~l~~~~~~~~~-~~~~~  314 (413)
T PRK15403        242 PVILIDA-----GGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF-IWRAVPIQLVGLALLIVGNLLWP-HVWLW  314 (413)
T ss_pred             hHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH-HHHHHHHHHHHHHHHHHHHHHcc-ccHHH
Confidence            7777655     78999999998887777777777756666666644443 22222222222222211110001 11211


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHH
Q 014682          320 LNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVL  399 (420)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~  399 (420)
                      ......+.+.+.....|......-. -.+..+|++.++.+.....+..+++...|++.++.           -...|...
T Consensus       315 ~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~-----------~~~~~~~~  382 (413)
T PRK15403        315 SVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNG-----------GRLPFHLL  382 (413)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CchHHHHH
Confidence            2233333334444555555532221 22335799999999999999999999999888774           34455555


Q ss_pred             HHHHHHHHH
Q 014682          400 NVVEAIGVL  408 (420)
Q Consensus       400 ~~~~~~~~~  408 (420)
                      ++++.+...
T Consensus       383 ~~~~~~~~~  391 (413)
T PRK15403        383 AVVAGVIVV  391 (413)
T ss_pred             HHHHHHHHH
Confidence            544444433

>PRK10054 putative transporter; Provisional

Probab=100.00  E-value=1.7e-31  Score=245.97  Aligned_cols=351  Identities=15%  Similarity=0.154  Sum_probs=257.2

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      ++++|.|+.+      .|++.+.+.++..+++++.|+++||+|||++++.+.++..++.+..+++++++.++++|++.|.
T Consensus        35 ~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  108 (395)
T PRK10054         35 SRQYSLSVDL------IGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINC  108 (395)
T ss_pred             HHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4678999999      9999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...++ .++..|..|+++|++++++.....++|.+++|.+++.+.+        .||+..|         ...++..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~--------~g~~~~f---------~~~~~~~  171 (395)
T PRK10054        109 AYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM--------QSINLPF---------WLAAICS  171 (395)
T ss_pred             HHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hccCcHH---------HHHHHHH
Confidence            77777776 8999999999999999999999999999999999998874        3555444         4454444


Q ss_pred             HHHH-HHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014682          161 FGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       161 ~~~~-~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      ++.. ...+.+||+++++++++   +                   +..+.++.+|||+++...+..++.......+....
T Consensus       172 ~i~~i~~~~~~~~~~~~~~~~~---~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  229 (395)
T PRK10054        172 AFPLVFIQIWVQRSEKAIATET---G-------------------SVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCI  229 (395)
T ss_pred             HHHHHHHHHHHhccccccccch---h-------------------hhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhH
Confidence            4433 33444665543211100   0                   00112567889988877776666555544444455


Q ss_pred             HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014682          240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFL  319 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (420)
                      +.|....   .+.+.+....+.......+.....+. ..++..||.++|+.+..+..+..++...+.....  +  .+ .
T Consensus       230 ~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~--~~-~  300 (395)
T PRK10054        230 SQYVMVV---ADSDFAEKVVAVVLPVNAAMVVSLQY-SVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGN--S--LL-L  300 (395)
T ss_pred             HHHHHHh---cccchHHHHHHHHHHhhhhheeeehh-HHHHHHccCCchhHHHHHHHHHHHHHHHHHHcch--H--HH-H
Confidence            5555332   23567777888888887777777665 3444555568888887777666666555433211  1  11 1


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHH
Q 014682          320 LNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVL  399 (420)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~  399 (420)
                      ..+.....+.+.....|.....+.+..|++.++++.+..+ ...+|..+||.++|.++|+.          |+...|.+.
T Consensus       301 ~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~----------g~~~~~~~~  369 (395)
T PRK10054        301 WGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL----------PPWSLFVIL  369 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc----------ChhhHHHHH
Confidence            2233344445555667788888999999999999998765 67799999999999999998          788888888


Q ss_pred             HHHHHHHHHHHhhhhhhcc
Q 014682          400 NVVEAIGVLMTFKPFLAQR  418 (420)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~  418 (420)
                      +.+..+..++... ..+|+
T Consensus       370 ~~~~~~~~~~~~~-~~~~~  387 (395)
T PRK10054        370 ALAIVAAWLLMLK-GMRAR  387 (395)
T ss_pred             HHHHHHHHHHHHh-ccccC
Confidence            7777777666665 55554

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=1.1e-31  Score=251.48  Aligned_cols=363  Identities=15%  Similarity=0.082  Sum_probs=249.3

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL-TRFLLG   80 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G   80 (420)
                      ++++|.|.++      .+++.+.+.++..++.++.|+++||+|||++++.+.++..++.++++++++++.+++ .|+++|
T Consensus        46 ~~~~g~s~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G  119 (455)
T TIGR00892        46 QQIFQATYSE------TAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITG  119 (455)
T ss_pred             HHHhCcchhH------HHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            5788999999      999999999999999999999999999999999999999999999999999998875 579999


Q ss_pred             hhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHH
Q 014682           81 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF  159 (420)
Q Consensus        81 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  159 (420)
                      ++.+...+. .+++.++++ ++|+++.++.+.+..+|..++|++++.+.+       .+|||+.|         .+.++.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~-------~~gwr~~f---------~~~~~~  182 (455)
T TIGR00892       120 LGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE-------SFGWRGSF---------LILGGL  182 (455)
T ss_pred             hcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH-------HhChHHHH---------HHHHHH
Confidence            998875454 788889886 789999999999999999999999999988       55666554         555555


Q ss_pred             HHHHHHHHHh-cccccCCCCCCCCcccc-hhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHH
Q 014682          160 AFGVTIAAFW-LPETLHRHNDDDDSCDV-SYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSE  237 (420)
Q Consensus       160 ~~~~~~~~~~-l~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (420)
                      .++..+..++ .|+.+.++..+.++++. ..+...+........++..+....+++|+|+++......++..........
T Consensus       183 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  262 (455)
T TIGR00892       183 LLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPII  262 (455)
T ss_pred             HHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHH
Confidence            5443333333 33222111000000000 000000000000000000111123578899988777776666665555556


Q ss_pred             HHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHH--HHHHHHHHHHHHhhh
Q 014682          238 IFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI--LGPIMVARIAGVLT--IPLLTSYPYIAMLSG  313 (420)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  313 (420)
                      +++.|..+      .|+++.+++...++.+++.+++++ ..+++.||  .++++.........  .+..+.....   . 
T Consensus       263 ~l~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~---~-  331 (455)
T TIGR00892       263 FLVPYAKD------KGVDEYEAAFLLSIIGFVDIFARP-SCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA---G-  331 (455)
T ss_pred             HHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh---c-
Confidence            67777643      588999999999999999988877 55666654  33343333322222  2222222111   1 


Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCch
Q 014682          314 FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQ  393 (420)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~  393 (420)
                       . ...+.+..++.++......+...+...+.+|+++++++.|+.+...++|+++||.+.|.+.|..+         +|+
T Consensus       332 -~-~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g---------~~~  400 (455)
T TIGR00892       332 -D-YTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK---------NYK  400 (455)
T ss_pred             -h-HHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC---------Ccc
Confidence             1 12233344445556666777888888899999999999999999999999999999999999872         588


Q ss_pred             HHHHHHHHHHHHHHHH
Q 014682          394 MVFFVLNVVEAIGVLM  409 (420)
Q Consensus       394 ~~f~~~~~~~~~~~~~  409 (420)
                      ..|++.+++.+++.+.
T Consensus       401 ~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       401 YIFYASGSIVVSAGLF  416 (455)
T ss_pred             hHHHHhhHHHHHHHHH
Confidence            8888887776666543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.3e-32  Score=247.63  Aligned_cols=367  Identities=16%  Similarity=0.203  Sum_probs=274.1

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHhh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLG   80 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G   80 (420)
                      .+++.|++|      .+++.+.++.|+.+++++.|++.||+|-|+++..+.++.++++++.+.+-  +++.+++.|++||
T Consensus        66 ~~~~ws~~~------k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqG  139 (466)
T KOG2532|consen   66 GEYDWSSTE------KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQG  139 (466)
T ss_pred             ceecCCHHH------HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhH
Confidence            478889889      99999999999999999999999999999999999999999999999875  4567899999999


Q ss_pred             hhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHH
Q 014682           81 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF  159 (420)
Q Consensus        81 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  159 (420)
                      ++.|...|+ ..+.++|.|++||++..++...+..+|.+++-+++|.+.+.      .+||++.|         .+.++.
T Consensus       140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s------~~GW~sif---------Y~~g~~  204 (466)
T KOG2532|consen  140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES------SLGWPSIF---------YVFGIV  204 (466)
T ss_pred             HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc------CCCCchHH---------HHHHHH
Confidence            999999998 99999999999999999999999999999999999999982      27777666         677777


Q ss_pred             HHHHHHHH-HhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHH
Q 014682          160 AFGVTIAA-FWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEI  238 (420)
Q Consensus       160 ~~~~~~~~-~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (420)
                      .++..+++ ++..|+|.+++.-.++   +++.+++...+++. +++.+.+++++++++.+|...+..++.+.....+..+
T Consensus       205 g~i~~~~w~~~~~d~P~~h~~is~~---El~~I~~~k~~~~~-~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y  280 (466)
T KOG2532|consen  205 GLIWFILWFLFYSDSPSKHPNISEK---ELKYIEKGKSEAHV-KKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTY  280 (466)
T ss_pred             HHHHHHHHHHHhcCCcccCCCCCHH---HHHHHHhccccccc-CCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77765554 4455555553322211   11222221111111 1115678999999999999999999999999999999


Q ss_pred             HHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHHHH
Q 014682          239 FSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP---------IMVARIAGVLTIPLLTSYPYIA  309 (420)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  309 (420)
                      .|.|+.+.     +|++..+.|++.++..+...+..+ +++.++|+..+         |..-.++....++.++.+.+..
T Consensus       281 ~PtY~~~V-----L~f~v~~~G~~salP~l~~~~~k~-~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~  354 (466)
T KOG2532|consen  281 LPTYLKEV-----LGFDVRETGFLSALPFLAMAIVKF-VAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS  354 (466)
T ss_pred             hhHHHHHH-----hCCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC
Confidence            99999988     899999999999999999999988 77888887644         2222233333334444444433


Q ss_pred             HhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCC
Q 014682          310 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFL  389 (420)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~  389 (420)
                      ..+.   +..+.+..+..  ...+..............|++.+..+|+.+....+.+.++|.+.|.+... ++.      
T Consensus       355 ~~~~---~~a~~~l~~~~--~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~-~t~------  422 (466)
T KOG2532|consen  355 DEHR---LLAVILLTIAI--GLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTD-NTR------  422 (466)
T ss_pred             CCcc---hHHHHHHHHHH--HHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCC-CCH------
Confidence            2222   11121211111  11222222222222222679999999999999999999999999999851 111      


Q ss_pred             CCchHHHHHHHHHHHHHHHHHhh
Q 014682          390 PGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       390 ~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      ..|+.+|++.+++.+++.++..+
T Consensus       423 ~eW~~VF~i~a~i~~~~~i~f~~  445 (466)
T KOG2532|consen  423 EEWRIVFLIAAGILIVGNIIFLF  445 (466)
T ss_pred             HHHHHHHHHHHHHHHHhchheeE
Confidence            16999999999999998766544

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=6.6e-31  Score=239.64  Aligned_cols=358  Identities=12%  Similarity=0.051  Sum_probs=252.3

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----VNFWMAVLTRF   77 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~   77 (420)
                      +|+|+|++|      .+++.+++.+++.+..++.|++.||+|.|+++..+.++.++.++..+++     ++++.+++.|+
T Consensus        63 ~~~~ls~~q------~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~  136 (462)
T PRK15034         63 IGFNFTTDQ------LFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIAL  136 (462)
T ss_pred             hhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHH
Confidence            379999999      9999999999999999999999999999999999999999999999987     89999999999


Q ss_pred             Hhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhc-----cccccCCcccccccccc----Cc
Q 014682           78 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA-----QPAEKYPNLFSSESLFG----KF  147 (420)
Q Consensus        78 l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~-----~~~~~~~~~~gw~~~~~----~~  147 (420)
                      +.|++ +...+. ...+++|+|+|+||+++|+.....++|..+++++...+.     +       .+||+....    ..
T Consensus       137 l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~-------~~G~~~~~~~~g~~~  208 (462)
T PRK15034        137 LCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFA-------FLGVNGVPQADGSVM  208 (462)
T ss_pred             HHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HhccccccccccchH
Confidence            99998 445554 999999999999999999997777777776666554433     3       345543321    22


Q ss_pred             cchHHHHHHHHHHHHHHHH-HHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHH
Q 014682          148 PYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYC  226 (420)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~-~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (420)
                      +|+....+..+..++..+. ++..++.++ .+.                         +.++..+.+|+|..|...+.++
T Consensus       209 ~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-~~~-------------------------~~~~~~~vlk~~~~Wllslly~  262 (462)
T PRK15034        209 SLANAAWIWVPLLAIATIAAWSGMNDIAS-SRA-------------------------SIADQLPVLQRLHLWLLSLLYL  262 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCccc-ccc-------------------------CHHHHHHHhCCCchhHHHHHHH
Confidence            3555555555555444333 344443221 100                         1123466899999999999999


Q ss_pred             HHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 014682          227 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYP  306 (420)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (420)
                      +....+.++..++|.|..+.       ++............+...+.++ ++++++||+|+++++..+.+...+......
T Consensus       263 ~tFG~fvg~s~~lp~~~~~~-------~~~~~~l~~~~l~~l~~~l~rp-lgG~LADRiG~~~vl~~~~i~~~i~~~~~~  334 (462)
T PRK15034        263 ATFGSFIGFSAGFAMLAKTQ-------FPDVNILRLAFFGPFIGAIARS-VGGAISDKFGGVRVTLINFIFMAIFSALLF  334 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------cChHHHHHHHHHHHHHHHHHHH-hhHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence            88888888888898887543       2332222223333455666655 889999999999999888876666553322


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCc---------------------chhhHHhhHHHHHHHHH
Q 014682          307 YIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQ---------------------DQRGAANGIAMTGMSLF  365 (420)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~g~~~g~~~~~~~~g  365 (420)
                      ..................+...+..+.-+...+.++.+.+|+                     ++.|.+.|+....+.+|
T Consensus       335 l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~G  414 (462)
T PRK15034        335 LTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVG  414 (462)
T ss_pred             HHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcc
Confidence            222111001111122222222222333344445555555553                     26889999999999999


Q ss_pred             HHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhc
Q 014682          366 KAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ  417 (420)
Q Consensus       366 ~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  417 (420)
                      +++-|.+.|...+..+         ++...|+.+.+..+++.++.+..+.|+
T Consensus       415 gf~~p~~~g~~~~~~g---------~~~~~~~~~~~~~~~~~~~~w~~y~r~  457 (462)
T PRK15034        415 GFFIPQAFGMSLNMTG---------SPVGAMKVFLIFYIVCVLLTWLVYGRR  457 (462)
T ss_pred             cchhhHHHHHHHHHcC---------CcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999998874         688899999999999988887745544

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=7.3e-31  Score=244.13  Aligned_cols=362  Identities=14%  Similarity=0.115  Sum_probs=258.1

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHH---hhhhhHHHHHHHHH
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLSVNFWMAVLTRF   77 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~   77 (420)
                      +++++|.|+.+      .|++.+.+.+++.+++++.|++.||+|||+++..+..+++++.+++   ..+++++.++++|+
T Consensus        52 i~~~~~~s~~~------~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~  125 (438)
T PRK10133         52 FQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF  125 (438)
T ss_pred             HHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            36789999999      9999999999999999999999999999999999999999999875   46889999999999


Q ss_pred             Hhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhcccccc-----------CCcccccccccc
Q 014682           78 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK-----------YPNLFSSESLFG  145 (420)
Q Consensus        78 l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~-----------~~~~~gw~~~~~  145 (420)
                      ++|++.|...+. ..++.|+.|+++|.+.+++.+....+|..++|.+++.+.....+           .....+||..+ 
T Consensus       126 l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~-  204 (438)
T PRK10133        126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSL-  204 (438)
T ss_pred             HHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHH-
Confidence            999999988887 88899987777777789999999999999999998876521100           00012566554 


Q ss_pred             CccchHHHHHHH-HHHHHHHH-HHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHH
Q 014682          146 KFPYFLPCLCIS-LFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSII  223 (420)
Q Consensus       146 ~~~~~~~~~~~~-~~~~~~~~-~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (420)
                      ..+||.++.... +..++.++ ....+||.++++++  +  ++               +.+.....++++|+|.++...+
T Consensus       205 ~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~--~--~~---------------~~~~~~~~~~ll~~~~~~~~~l  265 (438)
T PRK10133        205 VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS--D--AK---------------QGSFSASLSRLARIRHWRWAVL  265 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc--c--cc---------------ccchhhhHHHHHhCchHHHHHH
Confidence            346777765433 22222222 23334442211100  0  00               0011223467888998877666


Q ss_pred             HHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 014682          224 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT  303 (420)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (420)
                      ..++..........+.+.|+.    ++.+|+++.+.+.......++.++++. ..+++.||+++|+.+..+..+......
T Consensus       266 ~~~~~~~~~~~~~~~~~~~l~----~~~~g~s~~~ag~~~~~~~~~~~vG~~-~~g~l~~r~g~~~~l~~~~~~~~~~~~  340 (438)
T PRK10133        266 AQFCYVGAQTACWSYLIRYAV----EEIPGMTAGFAANYLTGTMVCFFIGRF-TGTWLISRFAPHKVLAAYALIAMALCL  340 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh----hhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            666665555555556666642    122799999999999999999999988 778888888999988888766655544


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhc
Q 014682          304 SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKR  383 (420)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~  383 (420)
                      ......   ..  .  ......+.+++.....|..++...+..| ++.+++.++.. +...|+.++|.+.|.+.|..   
T Consensus       341 ~~~~~~---~~--~--~~~~~~l~glg~~~i~P~~~s~a~~~~~-~~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~---  408 (438)
T PRK10133        341 ISAFAG---GH--V--GLIALTLCSAFMSIQYPTIFSLGIKNLG-QDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAA---  408 (438)
T ss_pred             HHHHcC---Ch--H--HHHHHHHHHHHHHHHHHHHHHHHHcccc-hhhccchhHHh-HHhccchHHHHHHHHHHHhc---
Confidence            433322   11  1  1223344566778889999999988766 45778888876 46678999999999999987   


Q ss_pred             cCCCCCCC-chHHHHHHHHHHHHHHHHHhh
Q 014682          384 LDASFLPG-SQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       384 ~~~~~~~g-~~~~f~~~~~~~~~~~~~~~~  412 (420)
                             | .+..|++.....+....+...
T Consensus       409 -------g~~~~~~~v~~~~~~~~~~~~~~  431 (438)
T PRK10133        409 -------GNIPTAELIPALCFAVIFIFARF  431 (438)
T ss_pred             -------cchHHHHHHHHHHHHHHHHHHHH
Confidence                   5 677777655555555444433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=100.00  E-value=7.5e-31  Score=244.08  Aligned_cols=352  Identities=20%  Similarity=0.296  Sum_probs=245.5

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL   82 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~   82 (420)
                      +|+|.+..+. ...+.|++.+++.++..++++++|+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++
T Consensus        42 ~~~g~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  120 (408)
T PRK09874         42 EQLGVTGHSA-LNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLL  120 (408)
T ss_pred             HHhCCccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            4566665441 012358999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHH
Q 014682           83 NGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAF  161 (420)
Q Consensus        83 ~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~  161 (420)
                      .+.. +. ..++.|++|+++|++++++......+|..++|.+++.+.+       ..+||..|         .+.++..+
T Consensus       121 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~~~~~~---------~~~~~~~~  183 (408)
T PRK09874        121 GGFV-PNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD-------SYGLRPVF---------FITASVLF  183 (408)
T ss_pred             hhhH-HhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCHHHHH---------HHHHHHHH
Confidence            6654 54 7889999999999999999999999999999999999987       45555443         55555444


Q ss_pred             HH-HHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHH-HHHHHHhhhhhHHHHH
Q 014682          162 GV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSII-VYCVFSLHDMAYSEIF  239 (420)
Q Consensus       162 ~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  239 (420)
                      +. +...+.+||+++..++++  ..+                   .++..+.+|+++++.... ...............+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (408)
T PRK09874        184 LCFLVTLFCIRENFQPVSKKE--MLH-------------------MREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPIL  242 (408)
T ss_pred             HHHHHHHHHhccCcccccchh--hhH-------------------HHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            43 334455666532211100  000                   001223456666544322 2222233333344455


Q ss_pred             HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014682          240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFL  319 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (420)
                      +.|..+...  .........+.+....+++.+++.. ..+++.||.++|+.+..+.....+..+.......     .+ .
T Consensus       243 ~~~~~~~~~--~~~~~~~~~g~~~~~~~l~~~~~~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~  313 (408)
T PRK09874        243 TLYVRELAG--NVSNIAFISGMIASVPGVAALLSAP-RLGKLGDRIGPEKILITALIFSVLLLIPMSFVQT-----PL-Q  313 (408)
T ss_pred             HHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchhHHHHHHHHHHHHHHHHHhcc-----HH-H
Confidence            655543210  0011112345555666677777766 6678888899999888777666555444333211     11 2


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHH
Q 014682          320 LNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVL  399 (420)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~  399 (420)
                      ..+..++.+++.....+...+...+..|++++|+.+++.+....+|..+||.+.|.+.+..          |++..|.+.
T Consensus       314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~----------g~~~~f~~~  383 (408)
T PRK09874        314 LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY----------GFRAVFLVT  383 (408)
T ss_pred             HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc----------chhHHHHHH
Confidence            2233344455666677888888888899999999999999999999999999999999987          899999999


Q ss_pred             HHHHHHHHHHHhh
Q 014682          400 NVVEAIGVLMTFK  412 (420)
Q Consensus       400 ~~~~~~~~~~~~~  412 (420)
                      +++.+++.++.+.
T Consensus       384 ~~~~l~~~~~~~~  396 (408)
T PRK09874        384 AGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988888777665

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=1.6e-30  Score=242.83  Aligned_cols=336  Identities=17%  Similarity=0.126  Sum_probs=214.8

Q ss_pred             CcccccccccccchhhhhHHHH-HH-----HHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHH----
Q 014682            1 MIKDFQIAKREEDIGSYAGYVG-SS-----FMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW----   70 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~-s~-----~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~----   70 (420)
                      +.+|++.++.+      .+... +.     ..++..+++++.|+++||+|||++++.+..++.++.++++++++++    
T Consensus        41 i~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~  114 (434)
T PRK15075         41 IAKTFFPAGNE------FASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGL  114 (434)
T ss_pred             HHHHhCCCCCc------hHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            35788887766      44332 22     2333457899999999999999999999999999999999999987    


Q ss_pred             ----HHHHHHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccC-Cccccccccc
Q 014682           71 ----MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY-PNLFSSESLF  144 (420)
Q Consensus        71 ----~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~-~~~~gw~~~~  144 (420)
                          .++++|+++|++.+...+. ..+++|++|+|+|++++++...+.++|..+++.+++.+....... ...+|||   
T Consensus       115 ~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr---  191 (434)
T PRK15075        115 AAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWR---  191 (434)
T ss_pred             HHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchH---
Confidence                4688999999999988886 899999999999999999999999999988888888775311000 0034444   


Q ss_pred             cCccchHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHH-H
Q 014682          145 GKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSI-I  223 (420)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  223 (420)
                            .++....+............||+++..+++                    ++++.+...++..++++.+... .
T Consensus       192 ------~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~  245 (434)
T PRK15075        192 ------IPFLIGCLIVPFIFLIRRSLEETEEFLARK--------------------HRPSMREIFRSLAANWRIVLAGML  245 (434)
T ss_pred             ------HHHHHHHHHHHHHHHHHHhcCCCHHHHHhh--------------------hccccccHHHHHHHhHHHHHHHHH
Confidence                  444543332222222222223221100000                    0000111123334454444332 2


Q ss_pred             HHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 014682          224 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT  303 (420)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (420)
                      ..++..........+.|.|+.+.     .|++..+.+.......++.+++.+ +.+++.||++||+....+.........
T Consensus       246 ~~~~~~~~~~~~~~~~p~~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~Dr~g~r~~~~~~~~~~~~~~~  319 (434)
T PRK15075        246 MVAMTTVSFYLITVYTPTFGKTV-----LHLSAADSLLVTLCVGVSNFIWLP-IGGALSDRIGRRPVLIAFTVLAILTAY  319 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            22223333444556677777654     688888888888888888888877 778899999999887765544332211


Q ss_pred             -HHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHH-HHHHHhhhhhhHHHHhh
Q 014682          304 -SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS-LFKAAGPAGGGALFSWA  380 (420)
Q Consensus       304 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~g~~~~g~l~~~~  380 (420)
                       ........+  ... .......+.+++.....+.......|..|++.|+++.|+.+.+.. +++.++|.+.|.+.|..
T Consensus       320 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~  395 (434)
T PRK15075        320 PALSWLVAAP--SFA-RMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT  395 (434)
T ss_pred             HHHHHHHcCC--chH-HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence             111111111  111 111111222233344455566778899999999999999766555 45888999999999987

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=100.00  E-value=2.6e-30  Score=237.79  Aligned_cols=323  Identities=19%  Similarity=0.222  Sum_probs=226.4

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      .+++|.|+++      .+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+.+.++++++.+++.|+++|+
T Consensus        18 ~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~   91 (377)
T PRK11102         18 AADFGVSAGS------VQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGL   91 (377)
T ss_pred             HHHhCCCHHH------HHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            4788999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...+. .+++.|++|+|+|++++++......+|..++|.+++.+.+       ..|||+.         +...++..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~~~~~---------~~~~~~~~  155 (377)
T PRK11102         92 AAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV-------WFSWHAI---------FWVLALAA  155 (377)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcChHHH---------HHHHHHHH
Confidence            98888777 8999999999999999999999999999999999999987       4455444         35555544


Q ss_pred             HHH-HHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014682          161 FGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       161 ~~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      ++. +...+++||+++++++++.+.+                  +.....++.+|+|+++...+...+.......+....
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (377)
T PRK11102        156 ILAAALVFFFIPETLPKERRQPFHLR------------------TTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAG  217 (377)
T ss_pred             HHHHHHHHHhCCccCcccccCCCChH------------------HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcC
Confidence            443 3445667776433211110000                  001124567788887766655544443334443344


Q ss_pred             HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014682          240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFL  319 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (420)
                      |.++.+.     .|+++.+.+.......+..+++++ ..+++.||.++|+....+..+..+..+........+ ...+..
T Consensus       218 ~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  290 (377)
T PRK11102        218 PFVYIEL-----NGVSPQNFGYYFALNIVFLFVMTI-INSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLD-LGFWAL  290 (377)
T ss_pred             HHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHH
Confidence            4444333     688999999999999999988887 677788888999988887765444333222221111 111211


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHH-HHHHHHhhhhh
Q 014682          320 LNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM-SLFKAAGPAGG  373 (420)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~~g~~~~  373 (420)
                      ..... ..........+.......|..| ++++++.++.+... .++..+++.+.
T Consensus       291 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~  343 (377)
T PRK11102        291 VVGVA-AFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS  343 (377)
T ss_pred             HHHHH-HHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111 1222223334444455666555 89999999987765 45555555543

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=7.7e-31  Score=250.10  Aligned_cols=360  Identities=16%  Similarity=0.168  Sum_probs=241.6

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      .+++|.|+++      .+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.++++|++.+++.|++.|+
T Consensus        47 ~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  120 (496)
T PRK03893         47 QGEFGLTTVQ------AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGM  120 (496)
T ss_pred             HHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            5789999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...+. ..++.|++|+|+|++++++...+.++|..++|.+++.+.+       ..+||+.|         .+..+..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~w~~~f---------~~~~~~~  184 (496)
T PRK03893        121 GMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP-------VWGWRALF---------FIGILPI  184 (496)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCHHHHH---------HHHHHHH
Confidence            98887776 8999999999999999999999999999999999999987       55666544         4433333


Q ss_pred             HHHHHHHHhcccccCCCCCCCCccc--chhHhhhhhhhhhhh--------------hhcCCCCch---------------
Q 014682          161 FGVTIAAFWLPETLHRHNDDDDSCD--VSYDALESASAEVKE--------------EEGREATPK---------------  209 (420)
Q Consensus       161 ~~~~~~~~~l~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------~~~~~~~~~---------------  209 (420)
                      +..++....+||+++++++++++.+  +..+.......+...              ........+               
T Consensus       185 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (496)
T PRK03893        185 IFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFIS  264 (496)
T ss_pred             HHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Confidence            3333444556766543221111110  000000000000000              000000000               


Q ss_pred             --hh-hccc-hhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014682          210 --KS-LLKN-WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  285 (420)
Q Consensus       210 --~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  285 (420)
                        .+ ..++ +.........+...........+.|.|+.+.     +|++..+.+.+.+...++.+++++ ..+++.||+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~~~~~~g~~~~~~~~~~~~g~~-~~g~l~dr~  338 (496)
T PRK03893        265 FMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTD-----LGYDPHTVANVLFFSGFGAAVGCC-VGGFLGDWL  338 (496)
T ss_pred             HHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence              00 0000 0011111111111111122345677777544     789999999999999999999987 778888999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHH
Q 014682          286 GPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF  365 (420)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  365 (420)
                      ++|+.+..+..+..+..+.......   .. ........+..+....+..+....+.++.+|+++|++++|+.+....+|
T Consensus       339 g~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g  414 (496)
T PRK03893        339 GTRKAYVCSLLISQLLIIPVFAIGG---AN-VWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALG  414 (496)
T ss_pred             cchHHHHHHHHHHHHHHHHHhhccc---cH-HHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHH
Confidence            9988877766554444333222111   11 1111122222222233344566678889999999999999999999999


Q ss_pred             HHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHH
Q 014682          366 KAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVE  403 (420)
Q Consensus       366 ~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~  403 (420)
                      +.++|.+.|.+.|..          |++..+...+..+
T Consensus       415 ~~lgp~l~g~l~~~~----------g~~~~~~~~~~~~  442 (496)
T PRK03893        415 GALAPILGALIAQRL----------DLGTALASLSFSL  442 (496)
T ss_pred             HHHHHHHHHHHhccC----------ChHHHHHHHHHHH
Confidence            999999999999987          7777775555433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=100.00  E-value=1.1e-30  Score=241.75  Aligned_cols=336  Identities=15%  Similarity=0.110  Sum_probs=232.8

Q ss_pred             HHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHhhhhccchhhh-Hhhhh
Q 014682           24 SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYAC   94 (420)
Q Consensus        24 ~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~-~~~i~   94 (420)
                      ...++..+++++.|+++||+|||+++..+.++..++.++++++++++        .+++.|+++|++.+...+. ..++.
T Consensus        43 ~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~  122 (394)
T TIGR00883        43 AGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLA  122 (394)
T ss_pred             HHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhh
Confidence            34455567899999999999999999999999999999999998875        4888999999998888886 99999


Q ss_pred             hhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHHHHHHhccccc
Q 014682           95 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETL  174 (420)
Q Consensus        95 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~  174 (420)
                      |++|+|+|++..+....+..+|.++++.++..+...       .+.... ..++||.++.+.++..++........||++
T Consensus       123 ~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~-------~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  194 (394)
T TIGR00883       123 EYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYL-------LGDDAL-LEWGWRIPFLVSAVLVLIGLYLRRNLEETP  194 (394)
T ss_pred             hcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCHHHh-hccchHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            999999999999999999999999999988776531       110000 034566666666655555444445566654


Q ss_pred             CCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchh--HHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCcc
Q 014682          175 HRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP--LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGL  252 (420)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (420)
                      ++++++++                   +++...+.++.+++++  ++......++..........+.|.|..+.     .
T Consensus       195 ~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  250 (394)
T TIGR00883       195 VFEKAQEK-------------------HKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQT-----L  250 (394)
T ss_pred             hHHHHHhc-------------------cccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----c
Confidence            32211100                   1111233455666655  55555555555555555566777777544     6


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 014682          253 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL-TSYPYIAMLSGFGLAFLLNCASVVKNLLS  331 (420)
Q Consensus       253 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (420)
                      |.++.+.+.......+...++.+ +.+++.||+++|+.+.....+..... ..........  . ...........++..
T Consensus       251 g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~g~~~  326 (394)
T TIGR00883       251 GLSANSALLVLMLSLILFFITIP-LSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSG--S-FTLFFFLVLGLALIG  326 (394)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCC--c-hHHHHHHHHHHHHHH
Confidence            88888999988888888888877 67788888999887765544433322 2221111111  1 112223334444555


Q ss_pred             HHHHHHHHHHhhhcCCcchhhHHhhHHH-HHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHH
Q 014682          332 VSIITGLFILQNRAVDQDQRGAANGIAM-TGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEA  404 (420)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~  404 (420)
                      ....+.......|.+|+++|+++.++.. ....+|..++|.+.|.+.|..+         .++..++...+..+
T Consensus       327 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g---------~~~~~~~~~~~~~l  391 (394)
T TIGR00883       327 GMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG---------DWYAIGYYLAALAL  391 (394)
T ss_pred             HHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC---------cchhHHHHHHHHHH
Confidence            6677888899999999999999999854 4457888899999999999872         26666665555444

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=2.6e-31  Score=250.23  Aligned_cols=361  Identities=11%  Similarity=0.044  Sum_probs=235.9

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG   80 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G   80 (420)
                      +.+|+|++.++      .+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.+++++++.+++.|+++|
T Consensus        62 l~~~~gls~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G  135 (476)
T PLN00028         62 IRDNLNLTKSD------IGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIG  135 (476)
T ss_pred             HHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            35789999999      999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhhhHhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhcccccc--CCccccccccccCccchHHHHHHHH
Q 014682           81 SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK--YPNLFSSESLFGKFPYFLPCLCISL  158 (420)
Q Consensus        81 ~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~--~~~~~gw~~~~~~~~~~~~~~~~~~  158 (420)
                      ++.+...+...+++|++|+++|++++++.....++|..+++.+.+.+......  .....|||         ..+.+.++
T Consensus       136 ~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr---------~~f~i~g~  206 (476)
T PLN00028        136 FSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWR---------IAFFVPGL  206 (476)
T ss_pred             HHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhH---------HHHHHHHH
Confidence            98876655567889999999999999999888888888777666554321000  00123454         44466666


Q ss_pred             HHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHH
Q 014682          159 FAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEI  238 (420)
Q Consensus       159 ~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (420)
                      +.++..+..+++++++++.+.+  +   .    ++.   .+.++++.....++.++++++|...+.+++..........+
T Consensus       207 l~l~~~l~~~~~~~~~p~~~~~--~---~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (476)
T PLN00028        207 LHIIMGILVLTLGQDLPDGNYR--E---L----KKS---GTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNI  274 (476)
T ss_pred             HHHHHHHHHHHHcCcCCCCchh--h---H----Hhc---CccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhH
Confidence            6655444444444432211100  0   0    000   00000001123456678888887776665555544555667


Q ss_pred             HHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH-------HHHHHHHHHHHHHHHHHHHHHh
Q 014682          239 FSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM-------VARIAGVLTIPLLTSYPYIAML  311 (420)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  311 (420)
                      .|.|+.+.     .|++..+++.+.+..+++.+++++ +.+++.||+++|+       .......+..+....+....  
T Consensus       275 ~p~~l~~~-----~g~s~~~a~~~~~~~~~~~~ig~~-~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~--  346 (476)
T PLN00028        275 IAEYFYDR-----FGLSLETAGAIAASFGLMNLFARP-AGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRAN--  346 (476)
T ss_pred             HHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccc--
Confidence            77776544     789999999999999999999988 7788888877641       11122222212122211111  


Q ss_pred             hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCC
Q 014682          312 SGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPG  391 (420)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g  391 (420)
                       .  ... ......+.+++.....+....+..+ .+++++|++.|+.+....+|+.++|.+.    +... .      .+
T Consensus       347 -~--~~~-~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~g~lg~~i~~~l~----~~~~-~------~~  410 (476)
T PLN00028        347 -S--LGA-AIVVMILFSIFVQAACGATFGIVPF-VSRRSLGVISGLTGAGGNVGAVLTQLLF----FTGS-S------YS  410 (476)
T ss_pred             -h--HHH-HHHHHHHHHHHHHHhhhhhcccCcc-cChhhchhhhhhhhccccHHHHHHHHHH----HhcC-C------cc
Confidence             1  111 1111222222233334445555555 4568999999998777777776666544    3211 0      16


Q ss_pred             chHHHHHHHHHHHHHHHHHhh
Q 014682          392 SQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       392 ~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      |...|++.+++.+++.++.+.
T Consensus       411 y~~~f~~~~~~~~i~~~~~~~  431 (476)
T PLN00028        411 TETGISLMGVMIIACTLPVAF  431 (476)
T ss_pred             HhhHHHHHHHHHHHHHHHHHh
Confidence            888999998888888776655

>PRK11043 putative transporter; Provisional

Probab=100.00  E-value=5.1e-30  Score=237.65  Aligned_cols=324  Identities=18%  Similarity=0.158  Sum_probs=235.9

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      ++++|.++++      .+++.+++.++..++++++|+++||+|||+++..+..+..++.+++.++++++.+++.|+++|+
T Consensus        33 ~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  106 (401)
T PRK11043         33 QADLQTSASA------VSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAV  106 (401)
T ss_pred             HHHHCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            5788999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...+. .+++.|++|+++|++..+.......+|..++|.+++.+.+       ..|||..|         ...++..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~-------~~g~~~~~---------~~~~~~~  170 (401)
T PRK11043        107 GVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN-------HFGWQAIF---------ATLFAIT  170 (401)
T ss_pred             hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCChHHHH---------HHHHHHH
Confidence            98877776 8899999999999999999999999999999999999988       45555444         5555555


Q ss_pred             HHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHH
Q 014682          161 FGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFS  240 (420)
Q Consensus       161 ~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (420)
                      ++..+..++++|++++++++    +                   ++...++++|+|+++...+...+.......+..+.|
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~----~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  227 (401)
T PRK11043        171 LLLILPTLRLKPSKKARKQS----Q-------------------DALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSP  227 (401)
T ss_pred             HHHHHHHHHcCCCCCccccc----h-------------------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhH
Confidence            55444445555543221100    0                   012346677888877655554444444445555666


Q ss_pred             HhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 014682          241 LWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLL  320 (420)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (420)
                      .+..+      .|+++.+.+.......++.+++++ ..+++.||+++++..........+................+ ..
T Consensus       228 ~~~~~------~g~s~~~~g~~~~~~~~~~~~g~~-~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  299 (401)
T PRK11043        228 FILEQ------MGYSPADIGLSYVPQTIAFLVGGY-GCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLV-PL  299 (401)
T ss_pred             HHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHH-HH
Confidence            65532      588999999888777777778777 66777788888887665555444443332222111111111 22


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHh
Q 014682          321 NCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW  379 (420)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  379 (420)
                      .......+.......+.......+..| +++|++.|+.+..+..++..++.+.|.+.+.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        300 LIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            222333444555666776666666555 6899999999999999999999999998774

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=100.00  E-value=1.5e-29  Score=232.55  Aligned_cols=339  Identities=14%  Similarity=0.130  Sum_probs=250.8

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhH----HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI----IMGTASVVIFNTLFGLSVNFWMAVLTRF   77 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l----~~~~~~~~~~~~~~~~~~~~~~l~~~r~   77 (420)
                      .+|+|.|..|      +|++.+++.+...++++++|+++||+|||+..    ..+..+..+  ..+..+++++.+++.|.
T Consensus        31 l~~~g~s~~~------ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~  102 (382)
T TIGR00902        31 LKGIGLGEEM------IGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIG  102 (382)
T ss_pred             HHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHH
Confidence            3678999999      99999999999999999999999999985433    222222222  24446789999999999


Q ss_pred             Hhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHH
Q 014682           78 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI  156 (420)
Q Consensus        78 l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  156 (420)
                      ++|.+.+...|. .++..|+  +++|+++++......++|.+++|++++.+.+       .+|||..|         ...
T Consensus       103 l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~-------~~g~~~~f---------~~~  164 (382)
T TIGR00902       103 LFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIG-------MFDEQNIL---------AIL  164 (382)
T ss_pred             HHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHH-------HcChhHHH---------HHH
Confidence            999987777776 6766553  5788999999999999999999999999998       66776555         333


Q ss_pred             HHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHH
Q 014682          157 SLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYS  236 (420)
Q Consensus       157 ~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (420)
                      .+..++. +..+.++|++++++++++  +                ++++.+..++++|||+++...+..++.......+.
T Consensus       165 ~~~~~~~-~~~~~~~~~~~~~~~~~~--~----------------~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~  225 (382)
T TIGR00902       165 TAGLAFM-LIGFLIKPTIPPKDAIPE--D----------------ESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYY  225 (382)
T ss_pred             HHHHHHH-HHHHHcCCCCCCCccccc--c----------------ccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            3332222 222333443211111100  0                00112345788999999988888888777777888


Q ss_pred             HHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 014682          237 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGL  316 (420)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (420)
                      ++.|.|..+      .|.++.++|.......+..++... ..+++.||+++|+.+..+.+...+....+...++      
T Consensus       226 ~~~~~~l~~------~g~s~~~~g~l~~~~~~~~i~~~~-~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~------  292 (382)
T TIGR00902       226 GFSAIYWQA------AGISASATGLLWGIGVLAEIIIFA-FSNKLFQNCSARDLLLISAIACVGRWAIIGAIEA------  292 (382)
T ss_pred             HHHHHHHHH------CCCCHhHHHHHHHHHHHHHHHHHH-HhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhh------
Confidence            888887753      689999999999987777777765 7778888889999999888888887776654322      


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHH-HHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHH
Q 014682          317 AFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMT-GMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMV  395 (420)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~  395 (420)
                      ...+.....+.++......+....++++. |++++++++++.+. ...+|..++|.++|.++|+.          |+ ..
T Consensus       293 ~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~----------g~-~~  360 (382)
T TIGR00902       293 FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL----------GA-GT  360 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------cH-HH
Confidence            22344455666666777888888888887 99999999999874 56899999999999999998          64 66


Q ss_pred             HHHHHHHHHHHHHHH
Q 014682          396 FFVLNVVEAIGVLMT  410 (420)
Q Consensus       396 f~~~~~~~~~~~~~~  410 (420)
                      |...+.+.+++.++.
T Consensus       361 ~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       361 FVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            788888877765543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=100.00  E-value=1.8e-29  Score=233.20  Aligned_cols=319  Identities=19%  Similarity=0.195  Sum_probs=224.1

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      ++|+|.++++      .++..+.+.++..+++++.|+++||+|||++++.+.++..++.+.+..+++++.+++.|+++|+
T Consensus        30 ~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~  103 (392)
T PRK10473         30 AADLNASEAQ------LHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGI  103 (392)
T ss_pred             HHHhCCCHHH------HHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence            5788999988      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...+. .+++.|++|+++|+++.++.+....+|..++|.+++.+.+       ..|||..|         .+.++..
T Consensus       104 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~-------~~g~~~~~---------~~~~~~~  167 (392)
T PRK10473        104 GAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML-------KFPWQSLF---------YTMAAMG  167 (392)
T ss_pred             hhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CcChHHHH---------HHHHHHH
Confidence            98887776 9999999999999999999999999999999999998877       44555443         5555544


Q ss_pred             HHH-HHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014682          161 FGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       161 ~~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      ++. ++..+.+||+++++++++  .+                   ..+..++.+|+++++...+...+.......+..+.
T Consensus       168 ~i~~~~~~~~~~~~~~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (392)
T PRK10473        168 ILVLLLSLFILKETRPARAPAA--SS-------------------KPRENSESLLNRFFLSRLVITTLSVTVILTFVNTS  226 (392)
T ss_pred             HHHHHHHHHHcCCCCCcccCCc--cc-------------------hHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            443 344566777653321110  00                   01122456777776654444433333333344444


Q ss_pred             HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014682          240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFL  319 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (420)
                      |.+..+.     +|+++.+.+......++..+++.. ..+++.||+++|+....+..+..++...........    ...
T Consensus       227 ~~~~~~~-----~g~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  296 (392)
T PRK10473        227 PVLLMEQ-----MGFSRGEYAIIMALTAGVSMTVSF-STPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHA----VSL  296 (392)
T ss_pred             HHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence            5554433     688999999999988999999887 677888899999998888877766665554432211    111


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhh
Q 014682          320 LNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  380 (420)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  380 (420)
                      ........+.  ....+.  ....+..|.++|+   |..+....+++.+++.+.+.+.+..
T Consensus       297 ~~~~l~~~g~--~~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~  350 (392)
T PRK10473        297 FGITLICAGF--SVGFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVL  350 (392)
T ss_pred             HHHHHHHHHH--HHHhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1111111111  111111  2223334544443   5555666788888888888898887

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.8e-31  Score=230.62  Aligned_cols=360  Identities=14%  Similarity=0.122  Sum_probs=281.5

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhH---HHHHHHHH
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF---WMAVLTRF   77 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~---~~l~~~r~   77 (420)
                      |.+|+|+|++|      .+++.++..+...+..++.|.+.||||.|++...+.++..+-.+..+++.+.   +++++.++
T Consensus        40 i~~~~~LS~~q------~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gl  113 (417)
T COG2223          40 IKSDFGLSEGQ------KGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGL  113 (417)
T ss_pred             hccccCCCHHH------HHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHH
Confidence            46899999999      9999999999999999999999999999999999999999999999998544   59999999


Q ss_pred             HhhhhccchhhhHhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHH
Q 014682           78 LLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS  157 (420)
Q Consensus        78 l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  157 (420)
                      +.|++.+.+.....++++++|||++|.++|+.. ..|+|..+...++..+..       .+|+.      .|+....+..
T Consensus       114 l~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~-------~~g~~------~w~~~~~i~~  179 (417)
T COG2223         114 LLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV-------AFGFL------AWRNVAGIYV  179 (417)
T ss_pred             HHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH-------HHhhH------HHHHHHHHHH
Confidence            999998888877999999999999999999999 999999999999988887       55510      1333333333


Q ss_pred             HHHHH-HHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHH
Q 014682          158 LFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYS  236 (420)
Q Consensus       158 ~~~~~-~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (420)
                      +..++ .+..++...|.|+.++..++..                     +...+.++++++.|...+.++........+.
T Consensus       180 ~~l~v~~v~~~~~~~d~p~~r~~~~~~~---------------------~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs  238 (417)
T COG2223         180 VALAIAAVLAWLGMNDVPEHRASVKPQL---------------------PAQLKAVFSNKDTWLLSLLYFATFGGFVGFS  238 (417)
T ss_pred             HHHHHHHHHHHHHhCCChhhhccccccc---------------------hhHHHHHhcCcchHHHHHHHHHHHHHHHHHH
Confidence            33333 4455666666655322221111                     0345678889999999999999999999999


Q ss_pred             HHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhh-hH
Q 014682          237 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG-FG  315 (420)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  315 (420)
                      .++|.|+++.     ++.++.++|.......+.+.+.+. .+++++||+|.+|+.......++++............ ..
T Consensus       239 ~~l~~~~~~~-----fg~~~~~Ag~~a~~f~~~g~l~Rp-~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~  312 (417)
T COG2223         239 AYLPMYLVTQ-----FGLSPVTAGLIAFLFPLIGALARP-LGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGG  312 (417)
T ss_pred             HHHHHHHHHh-----cCCChhhHHHHHHHHHHHHHHHHh-ccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCc
Confidence            9999999887     899999999999998999999988 8999999999999888888777777666655432211 01


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHH
Q 014682          316 LAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMV  395 (420)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~  395 (420)
                      .........+..+.+...-+...+.++..++| ++.|.+.|+....+.+|+..-|...|..++.++         .+...
T Consensus       313 ~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg---------~~~~~  382 (417)
T COG2223         313 SFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG---------SYTGA  382 (417)
T ss_pred             chHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcc---------cHHHH
Confidence            11112222222223334444555566666555 689999999999999999999999999999983         58899


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhc
Q 014682          396 FFVLNVVEAIGVLMTFKPFLAQ  417 (420)
Q Consensus       396 f~~~~~~~~~~~~~~~~~~~~~  417 (420)
                      |+++..+.+++.+..+..+.++
T Consensus       383 f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         383 FMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999988776634444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=100.00  E-value=6.1e-30  Score=233.06  Aligned_cols=323  Identities=25%  Similarity=0.371  Sum_probs=266.1

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      .+++|.++++      .+++.+...++..+++++.|+++||+|||+.+..+..+..++.+...++++++.+++.|++.|+
T Consensus        26 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~   99 (352)
T cd06174          26 AEDLGLSASQ------AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGL   99 (352)
T ss_pred             HHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence            3567888888      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...+. .+++.|++|+|+|++.+++.....++|..++|.+++.+.+       ..+||         ..+...++..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~---------~~~~~~~~~~  163 (352)
T cd06174         100 GGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE-------SLGWR---------WLFLILAILG  163 (352)
T ss_pred             ccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HhhHH---------HHHHHHHHHH
Confidence            99988887 9999999999999999999999999999999999999988       44444         3335555555


Q ss_pred             HHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHH
Q 014682          161 FGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFS  240 (420)
Q Consensus       161 ~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (420)
                      ++..+...+++                                            |.++...+..++..........+.+
T Consensus       164 ~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  199 (352)
T cd06174         164 LLLALLLLFLL--------------------------------------------RLLLLLALAFFLLSFGYYGLLTYLP  199 (352)
T ss_pred             HHHHHHHHHHH--------------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            55444333332                                            4455666666666666677777777


Q ss_pred             HhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014682          241 LWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM-VARIAGVLTIPLLTSYPYIAMLSGFGLAFL  319 (420)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (420)
                      .+..+.     .+.+..+.+.......++..++.. ..+++.||.++|+ .+..+..+..++.........      ...
T Consensus       200 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~  267 (352)
T cd06174         200 LYLQEV-----LGLSAAEAGLLLSLFGLGGILGAL-LGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS------LAL  267 (352)
T ss_pred             HHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc------HHH
Confidence            777654     588999999999999999999988 6677788889988 888887777777666554332      223


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHH
Q 014682          320 LNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVL  399 (420)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~  399 (420)
                      ......+.+.+.....+.......|..|+++|++..|+.+...+++..++|.+.|.+.|..          +++..+.+.
T Consensus       268 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~----------~~~~~~~~~  337 (352)
T cd06174         268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG----------GYGGVFLIL  337 (352)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------CcchHHHHH
Confidence            3445555666777788899999999999999999999999999999999999999999866          889999999


Q ss_pred             HHHHHHHHHHHhh
Q 014682          400 NVVEAIGVLMTFK  412 (420)
Q Consensus       400 ~~~~~~~~~~~~~  412 (420)
                      +++.+++.+..+.
T Consensus       338 ~~~~~i~~i~~~~  350 (352)
T cd06174         338 AALALLAALLLLL  350 (352)
T ss_pred             HHHHHHHHHHhee
Confidence            9988888776543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00895 2A0115 benzoate transport

Probab=99.98  E-value=6.5e-30  Score=237.05  Aligned_cols=340  Identities=19%  Similarity=0.230  Sum_probs=235.0

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      .+++|.++.+      .+++.+.+.++..+++++.|+++||+|||+++..+.++..++.++..++++++.+++.|++.|+
T Consensus        44 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  117 (398)
T TIGR00895        44 SAEWGLDPVQ------LGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGL  117 (398)
T ss_pred             hhccCCCHHH------HHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence            4678999888      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHH-HH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS-LF  159 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~-~~  159 (420)
                      +.+...+. .+++.|++|+++|++++++...+..+|..++|.+++.+.+       ..||+..+         ...+ +.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~g~~~~~---------~~~~~~~  181 (398)
T TIGR00895       118 GLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP-------VFGWRSLF---------YVGGIAP  181 (398)
T ss_pred             ccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh-------cccceeeh---------hhhhhHH
Confidence            99988887 9999999999999999999999999999999999999987       56776655         3443 33


Q ss_pred             HHHHHHHHHhcccccCCCCCCCCcc-cchhHhhhhhhhhh-----hhhhc--CCCCc-hhhhccchh---HHHHHHHHHH
Q 014682          160 AFGVTIAAFWLPETLHRHNDDDDSC-DVSYDALESASAEV-----KEEEG--REATP-KKSLLKNWP---LMSSIIVYCV  227 (420)
Q Consensus       160 ~~~~~~~~~~l~e~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~--~~~~~-~~~~~~~~~---~~~~~~~~~~  227 (420)
                      .+...+...++||+++...++++++ .+..++......++     +++++  +..+. .+.+++++.   .+...+..++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (398)
T TIGR00895       182 LLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFM  261 (398)
T ss_pred             HHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHH
Confidence            3334445667788765432221111 11101111000000     00000  00111 122333222   2222233333


Q ss_pred             HHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 014682          228 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPY  307 (420)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (420)
                      ..........+.|.+.. .     .|+++.+.+.......++.+++.+ +.+++.||+++|+........ .+.......
T Consensus       262 ~~~~~~~~~~~~~~~~~-~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~  333 (398)
T TIGR00895       262 LLVGVYFLTNWLPKLMV-E-----LGFSLSLAATGGALFNFGGVIGSI-IFGWLADRLGPRVTALLLLLG-AVFAVLVGS  333 (398)
T ss_pred             HHHHHHHHHHHHHHHHH-H-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcchHHHHHHHHHH-HHHHHHHHH
Confidence            33333344445553332 2     688899999999999999999987 778888888888444333332 222222222


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHH
Q 014682          308 IAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL  376 (420)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l  376 (420)
                      ..  ..   ........++.+++.....+...+...|.+|+++|+++.|+.+.+..+|..++|.+.|.+
T Consensus       334 ~~--~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       334 TL--FS---PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             Hh--hC---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            11  11   112233344455666777888899999999999999999999999999999999999875

>TIGR00889 2A0110 nucleoside transporter

Probab=99.98  E-value=3.2e-29  Score=232.05  Aligned_cols=364  Identities=12%  Similarity=0.022  Sum_probs=246.7

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCC-chhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG   80 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G   80 (420)
                      ++++|.+.+|      .|++.+++.++..++++++|+++||+|| |+++.++.++..++..+..+.++++.+.+.|++.|
T Consensus        30 ~~~~g~s~~~------iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  103 (418)
T TIGR00889        30 SKTLHFSGAE------IGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANS  103 (418)
T ss_pred             HHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4678999999      9999999999999999999999999965 77888888888888888889999999999999999


Q ss_pred             hhccchhhh-Hhhhh--------hhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchH
Q 014682           81 SLNGLLGPI-KAYAC--------EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL  151 (420)
Q Consensus        81 ~~~g~~~~~-~~~i~--------~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~  151 (420)
                      ++.+...+. .++..        |......|.|..|      .+|.++||.+++.+..                ...|+ 
T Consensus       104 ~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~----------------~~~~~-  160 (418)
T TIGR00889       104 LAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDI----------------ELSNI-  160 (418)
T ss_pred             HHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcc----------------cchhH-
Confidence            987766654 44432        2223334455444      4788899999887743                11122 


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhh
Q 014682          152 PCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLH  231 (420)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (420)
                      ++.+.++..++..+..+.+||+++.+++++   .+.              ++..+...++++|+|+++...+..++....
T Consensus       161 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~--------------~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  223 (418)
T TIGR00889       161 QLYITAGSSALLGVFALTLPDIPVAKSTAK---MSI--------------KVMLGLDAFILFKNKRMAIFFFFSMLLGAP  223 (418)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCccccc---cCH--------------HHHhhhhHHHHhcCCCeeeHHHHHHHHHhH
Confidence            233444444444445567788753221111   000              000112345678888887766666665544


Q ss_pred             hhhHHHHHHHhhcCcccCC--ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q 014682          232 DMAYSEIFSLWANSPKKLG--GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA  309 (420)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (420)
                      ......+.+.|..+.-...  ..+++....+...+...+..+++.+ ..+++.||+++|+.+..+.++..+....+....
T Consensus       224 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~-~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~  302 (418)
T TIGR00889       224 LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFIL-TIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD  302 (418)
T ss_pred             HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC
Confidence            4444445555554320000  0123456778889988888888876 677788888999999988887777655544421


Q ss_pred             HhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHH-HHHHHHHHHhhhhhhHHHHhhhhccCCCC
Q 014682          310 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAM-TGMSLFKAAGPAGGGALFSWAQKRLDASF  388 (420)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~~g~~~~g~l~~~~~~~~~~~~  388 (420)
                      .  .......+.+..++.+.......+....+++|.+|+++|++++|+.+ ....+|..+||.+.|.++|+.++...   
T Consensus       303 ~--~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~---  377 (418)
T TIGR00889       303 P--EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGT---  377 (418)
T ss_pred             c--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccC---
Confidence            1  11112223334444555555667777888999999999999999997 56789999999999999998642110   


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhhhhhhccC
Q 014682          389 LPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH  419 (420)
Q Consensus       389 ~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  419 (420)
                       .||+..|.+.+++.+++.++.++ ..||++
T Consensus       378 -~~~~~~f~~~~~~~~i~~~l~~~-~~~~~~  406 (418)
T TIGR00889       378 -FDWQTMWLFFAGYIAILAVLFMI-FFKYSH  406 (418)
T ss_pred             -CchHHHHHHHHHHHHHHHHHHHH-HhCCcc
Confidence             05889999988888887777666 555544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.98  E-value=1.6e-28  Score=226.46  Aligned_cols=341  Identities=14%  Similarity=0.159  Sum_probs=222.1

Q ss_pred             cccccccccccchhhhhHHHHHHHHH-HHHHhhhhhhhhhhhcCCchhH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVI-IMGTASVVIFNTLFGLSVNFWMAVLTRFLL   79 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grk~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~   79 (420)
                      ++|+|.|+++      .|++.+...+ +..++.++.++ +||+||||.+ ..+.+..+++..+.+++++++.+++.+.+.
T Consensus        43 ~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  115 (393)
T PRK15011         43 TDEVHARPAM------VGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFL  115 (393)
T ss_pred             HhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            5789999999      9999877655 55555544555 9999998875 556666677788888999999887666555


Q ss_pred             hhhccchhhh-Hhhhhhhchhhhh--hhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHH
Q 014682           80 GSLNGLLGPI-KAYACEIFREEHQ--ALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI  156 (420)
Q Consensus        80 G~~~g~~~~~-~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  156 (420)
                      |...+...|. .+++.|+.++++|  +...++.+.+.++|.++||++++.+.+       .+|||..|         ...
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~-------~~gw~~~f---------~~~  179 (393)
T PRK15011        116 SSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM-------GFSFTVMY---------LSA  179 (393)
T ss_pred             HHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------hcChHHHH---------HHH
Confidence            5544566676 7888888776655  345578889999999999999999998       55665444         555


Q ss_pred             HHHHHHH-HHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhH
Q 014682          157 SLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAY  235 (420)
Q Consensus       157 ~~~~~~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (420)
                      ++..++. +...+.+||+++++++++++   .              +     ..++  +++..+...............+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------------~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~  235 (393)
T PRK15011        180 AVAFIVCGVMVWLFLPSMRKELPLATGT---L--------------E-----APRR--NRRDTLLLFVICTLMWGTNSLY  235 (393)
T ss_pred             HHHHHHHHHHHHhhcCccCCCCcccccc---c--------------c-----cccc--ccccHHHHHHHHHHHHHHHHHH
Confidence            5555443 34456678765332211000   0              0     0000  1112222222223333333444


Q ss_pred             HHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 014682          236 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFG  315 (420)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (420)
                      ..+.|.|..+.     +|+++.+.+.+.....+..+++.+ +.+++.||+++|+....+.....+........   ..  
T Consensus       236 ~~~~p~~l~~~-----~~~~~~~~g~~~~~~~~~~i~~~~-~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~--  304 (393)
T PRK15011        236 IINMPLFIINE-----LHLPEKLAGVMMGTAAGLEIPTML-IAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA---HS--  304 (393)
T ss_pred             HHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH---hh--
Confidence            45677776554     688998999888776677766666 77888888999887766554444333222211   11  


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHH
Q 014682          316 LAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMV  395 (420)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~  395 (420)
                      .+. ......+.++......+......+|..| ++++++.++.+...++|..++|.+.|.+.|..          +++..
T Consensus       305 ~~~-~l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~----------g~~~~  372 (393)
T PRK15011        305 PAI-LLGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIW----------NYHAV  372 (393)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhHHH
Confidence            111 1112222222222333444566677776 56999999999999999999999999999987          88899


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 014682          396 FFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       396 f~~~~~~~~~~~~~~~~  412 (420)
                      |.+.+.+.+++.+..+.
T Consensus       373 ~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        373 FWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            98888888777666554

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.97  E-value=5.6e-29  Score=230.11  Aligned_cols=324  Identities=13%  Similarity=0.142  Sum_probs=227.9

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      .+++|.|+.+      .+++.+++.++..+++++.|+++||+|||+++..+..+..++.+.+.++++++.+++.|++.|+
T Consensus        35 ~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  108 (394)
T PRK11652         35 ARDLNVREGA------VQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGL  108 (394)
T ss_pred             HHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            4688999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...+. ..+..|.+++++|+++.+....+..++..++|.+++.+.+       ..|||..|         ...++..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~-------~~g~~~~f---------~~~~~~~  172 (394)
T PRK11652        109 GTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT-------LFGWRACY---------LFLLLLG  172 (394)
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccChHHHH---------HHHHHHH
Confidence            98877776 7888999999999999999999999999999999999987       45555444         5554444


Q ss_pred             HH-HHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014682          161 FG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       161 ~~-~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      ++ .....++.||+++++++++   +                   .....++.+|+|.++...+..+........+....
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~---~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (394)
T PRK11652        173 AGVTFSMARWMPETRPADARRT---R-------------------VLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACS  230 (394)
T ss_pred             HHHHHHHHHhCCccCccccchh---H-------------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhC
Confidence            43 3334556777643221110   0                   01234566778877765554444433333334444


Q ss_pred             HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014682          240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFL  319 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (420)
                      +.+..+.     +|+++.+.+.......++.++++. ..+++.||.+++...  .........+.............+. 
T Consensus       231 ~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~g~~-~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-  301 (394)
T PRK11652        231 GVLMGAV-----LGLSSMTVSILFILPIPAAFFGAW-FAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWFGVMNVWT-  301 (394)
T ss_pred             hHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccccHHH-
Confidence            5555443     688888999888877777777766 666777776632222  2222222222211111100111121 


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHh
Q 014682          320 LNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW  379 (420)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  379 (420)
                      ......+.+.+.....|.......+..| +++|++.++.+....+|+.+++.+.+.+.+.
T Consensus       302 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        302 LLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            2233344445556677888888888776 6889999999999999999999988877544

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.97  E-value=2.6e-28  Score=224.36  Aligned_cols=338  Identities=14%  Similarity=0.125  Sum_probs=237.6

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCc----hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK----PVIIMGTASVVIFNTLFGLSVNFWMAVLTRF   77 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~   77 (420)
                      .+|+|.|.++      +|++.+++.++..++++++|+++||+|||    +.+.+.....  .......+++++.+++.|+
T Consensus        31 l~~~g~s~~~------iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~  102 (382)
T PRK11128         31 LKGQGYTPET------IGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIG  102 (382)
T ss_pred             HHhcCCCHHH------HHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHH
Confidence            3678999999      99999999999999999999999999994    3333222221  2233344688999999999


Q ss_pred             Hhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHH
Q 014682           78 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI  156 (420)
Q Consensus        78 l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  156 (420)
                      +.|++.+...|. .+++.++  +++|+++++......++|.++||++++++.+       .+|||..|         ...
T Consensus       103 l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~-------~~g~~~~f---------~~~  164 (382)
T PRK11128        103 LFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS-------WFGEQAIL---------WIL  164 (382)
T ss_pred             HHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH-------HcChhHHH---------HHH
Confidence            999988887776 7777766  4568899999999999999999999999998       56666544         444


Q ss_pred             HHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHH
Q 014682          157 SLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYS  236 (420)
Q Consensus       157 ~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (420)
                      ++..++..+..+..||++++.+++    ++               +++...+.++++|+|+++...+..++.........
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~----~~---------------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~  225 (382)
T PRK11128        165 TAGVASMLLGQLLRPTIMPQGESR----QQ---------------ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYY  225 (382)
T ss_pred             HHHHHHHHHHHHccCCCCCccccc----cc---------------cccccchHHHHHcChhHHHHHHHHHHHHHHhHhHH
Confidence            443333333333445432211100    00               00112456789999999988777776666666666


Q ss_pred             HHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 014682          237 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGL  316 (420)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (420)
                      ...+.|..+      .|.++.+.|...+...+..++... ..+++.||+++++.+..+.....+..+.....+     ..
T Consensus       226 ~~~~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~-----~~  293 (382)
T PRK11128        226 GFSAIYWQA------AGYSASTIGYLWSLGVVAEVLIFA-FSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT-----AL  293 (382)
T ss_pred             HHHHHHHHH------CCCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh-----hH
Confidence            677777632      588999999999887787777766 677778888999998888777766655544322     11


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHH-HHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHH
Q 014682          317 AFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG-MSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMV  395 (420)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~  395 (420)
                      + .+.+..++.++......+....+..+. +++++++..+..+.. ..+|..+||.++|.++|..          |. ..
T Consensus       294 ~-~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~----------g~-~~  360 (382)
T PRK11128        294 P-WLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL----------GA-GV  360 (382)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------cH-HH
Confidence            2 223344444555555667777777775 677789999988744 5778899999999999998          55 46


Q ss_pred             HHHHHHHHHHHHHH
Q 014682          396 FFVLNVVEAIGVLM  409 (420)
Q Consensus       396 f~~~~~~~~~~~~~  409 (420)
                      ++..+++.+++.++
T Consensus       361 ~~~~~~~~~~~~~~  374 (382)
T PRK11128        361 FWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66667666655443

>TIGR00896 CynX cyanate transporter

Probab=99.97  E-value=1.3e-28  Score=224.38  Aligned_cols=322  Identities=16%  Similarity=0.083  Sum_probs=233.7

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG   80 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G   80 (420)
                      +++|+|.|+++      .+++.+.+.+++.+++++.|+++||+|||+++..+.++..++.+.+ .+++++.+++.|++.|
T Consensus        26 l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g   98 (355)
T TIGR00896        26 IRSALGMSFSV------AGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIG   98 (355)
T ss_pred             HHHHhCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHH
Confidence            36789999999      9999999999999999999999999999999999998888888877 7889999999999999


Q ss_pred             hhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHH
Q 014682           81 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF  159 (420)
Q Consensus        81 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  159 (420)
                      ++.+...+. ...+.|++| ++|++++++.+.+.++|..+++.+++.+.+       ..+       ..||..+...++.
T Consensus        99 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~-------~~~-------~~w~~~f~~~~~~  163 (355)
T TIGR00896        99 VGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQ-------HSG-------GHWQQALAWWALP  163 (355)
T ss_pred             HHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhh-------hhHHHHHHHHHHH
Confidence            998887776 778888886 689999999999999999999999988876       221       1133333443333


Q ss_pred             HHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014682          160 AFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       160 ~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      .++.  ...++||.++++++++                     +......++.+|+|.++...+...+..........+.
T Consensus       164 ~~~~--~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  220 (355)
T TIGR00896       164 ALLA--LLAWIPQVRRRVAANQ---------------------TTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWL  220 (355)
T ss_pred             HHHH--HHHHhhhhccccCCCC---------------------CCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3222  2233455432211100                     0011234567888888776666666555556666777


Q ss_pred             HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 014682          240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAF  318 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (420)
                      |.|..+      .|+++.+.+...+...++.+++++ ..+++.||+ ++|+....+..+..++.....+....   ..+.
T Consensus       221 p~~~~~------~g~~~~~~g~~~~~~~~~~i~~~~-~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  290 (355)
T TIGR00896       221 PAILIS------HGASAATAGSLLALMQLAQAASAL-LIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMH---GLWA  290 (355)
T ss_pred             HHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhh---HHHH
Confidence            877753      588999999999999999999988 667778887 45666666666666655544433221   1111


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhhcC-CcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhh
Q 014682          319 LLNCASVVKNLLSVSIITGLFILQNRAV-DQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQ  381 (420)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  381 (420)
                          ...+.+++.....+.......+.. +++++++..++.+....++..++|.+.|.+.|..+
T Consensus       291 ----~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       291 ----WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             ----HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                123334555566666655555434 46778999999999999999999999999999884

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.97  E-value=5.6e-28  Score=227.97  Aligned_cols=351  Identities=13%  Similarity=0.133  Sum_probs=241.7

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhc-----CCchh-HHHHHHHHHHHHHHHhhh---hhHHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPV-IIMGTASVVIFNTLFGLS---VNFWMAV   73 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grk~~-l~~~~~~~~~~~~~~~~~---~~~~~l~   73 (420)
                      ++.|.+.++      +|.+ +.....+ ++.+++|+++||+     ||||. +..+.+..+++....++.   ++++.+.
T Consensus        40 ~~~g~~~~~------ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~  111 (491)
T PRK11010         40 TVENIDLKT------IGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLA  111 (491)
T ss_pred             HhCCCCHHH------HHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHH
Confidence            345677777      7776 3344444 6899999999999     99886 667777777777777664   4788899


Q ss_pred             HHHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHH
Q 014682           74 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP  152 (420)
Q Consensus        74 ~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~  152 (420)
                      +.|++.|++.+...+. .+++.|++|+|+|+++.++...+..+|.++++.+++++.+.      ..|||         ..
T Consensus       112 ~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~------~~GWr---------~~  176 (491)
T PRK11010        112 ALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR------YLGWQ---------GM  176 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccCHH---------HH
Confidence            9999999988888777 99999999999999999999999999999999999998861      13454         44


Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhh
Q 014682          153 CLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHD  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      +.+.++..++..+..++.||+++..++++   + .              +++...+.++.+++++.+...+..++.....
T Consensus       177 f~i~a~l~ll~~l~~~~~~e~~~~~~~~~---~-~--------------~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~  238 (491)
T PRK11010        177 YWLMAALLIPCIIATLLAPEPTDTIPVPK---T-L--------------EQAVVAPLRDFFGRNNAWLILLLIVLYKLGD  238 (491)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcccccccc---c-h--------------hhhHHHHHHHHHcCcCHHHHHHHHHHHHHHH
Confidence            46666666555555556777643211100   0 0              0000123455677777666555555554444


Q ss_pred             hhHHHHHHHhhcCcccCCccCCchhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHh
Q 014682          233 MAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAIT-GFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAML  311 (420)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (420)
                      .....+.+.|+.+.     .|++..+.+...... .++.+++.+ +.+++.||+++|+.+..+..+..+..+.+......
T Consensus       239 ~~~~~~~~~~l~~~-----~G~s~~~~g~~~~~~g~i~~iiG~l-l~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~  312 (491)
T PRK11010        239 AFAMSLTTTFLIRG-----VGFDAGEVGLVNKTLGLLATIVGAL-YGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT  312 (491)
T ss_pred             HHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44445566665433     799999999987544 456777766 88889999998887766555444443333221111


Q ss_pred             hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCC
Q 014682          312 SGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPG  391 (420)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g  391 (420)
                      . ...+. +.....+..+......+...+...+..+++.+++..|+.+....+|..+++.+.|.+.|..          |
T Consensus       313 ~-~~~~~-l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~----------G  380 (491)
T PRK11010        313 D-KNLYS-MGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH----------G  380 (491)
T ss_pred             c-ccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------C
Confidence            1 11111 1222222222223334556777788889999999999999999999999999999999987          8


Q ss_pred             chHHHHHHHHHHHHHHHHHhh
Q 014682          392 SQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       392 ~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      |+..|.+.+++.+++.+....
T Consensus       381 ~~~~f~~~~~~~l~~l~~~~~  401 (491)
T PRK11010        381 WPTFYLFSVAAAVPGLLLLLV  401 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888888766654

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.97  E-value=2.1e-28  Score=228.76  Aligned_cols=348  Identities=21%  Similarity=0.207  Sum_probs=262.4

Q ss_pred             hhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHhhhhccchhhh
Q 014682           15 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----VNFWMAVLTRFLLGSLNGLLGPI   89 (420)
Q Consensus        15 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~   89 (420)
                      ...++++..+..+...+.++++|.++||++|||+++.+.++.++..+..++.     .+.+.+++.-++.|++.+...|+
T Consensus        44 ~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA  123 (524)
T PF05977_consen   44 PLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPA  123 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3449999999999999999999999999999999999988877665555442     47889999999999999999999


Q ss_pred             -HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHHHHHH
Q 014682           90 -KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAF  168 (420)
Q Consensus        90 -~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (420)
                       ++++.|..|+++..+++++.+...++..++||.++|.+..       .+|-.         ..+.+.++..++.+....
T Consensus       124 ~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva-------~~G~~---------~~f~inalsfl~~i~~l~  187 (524)
T PF05977_consen  124 WQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA-------FFGAA---------AAFLINALSFLISILALL  187 (524)
T ss_pred             HHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH-------HHHHH---------HHHHHHHHHHHHHHHHHH
Confidence             9999999999999999999999999999999999999987       33332         333555554444443334


Q ss_pred             hcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCccc
Q 014682          169 WLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKK  248 (420)
Q Consensus       169 ~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (420)
                      ..+.++++++.++   +..              .+.-....+.+.++|.+...+...+++++........+|.+..+.  
T Consensus       188 ~~~~~~~~~~~~~---e~~--------------~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~--  248 (524)
T PF05977_consen  188 RWKPPPPPSSLPR---ERF--------------FSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDV--  248 (524)
T ss_pred             Hccccccccccch---hhh--------------hhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH--
Confidence            4433221111110   111              111123456666777777666666666666566666778777655  


Q ss_pred             CCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 014682          249 LGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKN  328 (420)
Q Consensus       249 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (420)
                         +|.++...|++.+..+++.+++++ +.+++.++.++++.+..+.+..++..+.+.+...     .+ ...+..++.|
T Consensus       249 ---l~~~a~~yGll~a~~gvGai~Gal-~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~-----~~-~~~~~l~l~G  318 (524)
T PF05977_consen  249 ---LGGGASGYGLLLAAFGVGAILGAL-LLPRLRRRLSSRRLVLLASLLFALALLLLALSPS-----FW-LALIALFLAG  318 (524)
T ss_pred             ---hCCcHHHHHHHHHHHHHHHHHHHH-HHHHhhcccCcchhhHHHHHHHHHHHHHHhcchH-----HH-HHHHHHHHHH
Confidence               788999999999999999999998 6777888888888887777777666666555432     12 2334445556


Q ss_pred             hhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHH
Q 014682          329 LLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVL  408 (420)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~  408 (420)
                      +..........+..++..|++.||+++++.++....+..+|..+.|.+.+..          |.+..+.+.++..+++.+
T Consensus       319 ~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~----------g~~~al~~a~~~lll~~~  388 (524)
T PF05977_consen  319 AAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF----------GVRTALLIAGAALLLSAL  388 (524)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CHHHHHHHHHHHHHHHHH
Confidence            6667777788889999999999999999999999999999999999999998          788888888777777666


Q ss_pred             HHhhhhhhc
Q 014682          409 MTFKPFLAQ  417 (420)
Q Consensus       409 ~~~~~~~~~  417 (420)
                      +......++
T Consensus       389 ~~~~~~l~~  397 (524)
T PF05977_consen  389 IALRFPLRQ  397 (524)
T ss_pred             HHHHhcCcc
Confidence            655433443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.97  E-value=1.3e-29  Score=232.29  Aligned_cols=332  Identities=13%  Similarity=0.064  Sum_probs=225.0

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV-NFWMAVLTRFLLG   80 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G   80 (420)
                      ++++|.|+++      .+++.+++.+++.+++++.|+++||+|||+++..+.++..++.+++++++ +++.+++.|+++|
T Consensus        29 ~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g  102 (366)
T TIGR00886        29 KDDLGLSTAQ------LGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIG  102 (366)
T ss_pred             HHHhCCCHHH------hhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            5789999999      99999999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             hhccchhhhHhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccc---cCCccccccccccCccchHHHHHHH
Q 014682           81 SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE---KYPNLFSSESLFGKFPYFLPCLCIS  157 (420)
Q Consensus        81 ~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~---~~~~~~gw~~~~~~~~~~~~~~~~~  157 (420)
                      ++.+...+...++.|++|+|+|++++++.....++|..+++.+++.+.....   +.+...+||+.|     .   +..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~-----~---~~~~  174 (366)
T TIGR00886       103 IAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAF-----V---IVPA  174 (366)
T ss_pred             HhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchh-----H---HHHH
Confidence            9876655558899999999999999999998888888888887776654110   001123555433     0   2222


Q ss_pred             H-HHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHH
Q 014682          158 L-FAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYS  236 (420)
Q Consensus       158 ~-~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (420)
                      + ..+..++.....+|++++++++++.+.+.  +.       .+.+++......+.+++|+++...+...+.........
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (366)
T TIGR00886       175 GILLLPALLIFFVGADTPPGKPATGKLSFKG--AR-------WSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVS  245 (366)
T ss_pred             HHHHHHHHHHHHhcccCCcccccchhccccc--cc-------ccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence            2 22333344455566554322111100000  00       00000111145667888888877777666665556667


Q ss_pred             HHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 014682          237 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGL  316 (420)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (420)
                      .+.|.|..+.     +|+++.+.+.+.....+..+++.+ +.+++.||+++|+....+......+..++........  .
T Consensus       246 ~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  317 (366)
T TIGR00886       246 SIFAMFFKDQ-----FGLSKVTAGAYASLGGLLGSLARP-LGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPL--S  317 (366)
T ss_pred             HHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHhh-ccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcc--h
Confidence            7788887655     788999999888888888888877 7788888889887777666555554444433221100  1


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHH
Q 014682          317 AFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF  365 (420)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  365 (420)
                      ...................+.......+..| +++|++.|+.+...++|
T Consensus       318 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       318 LAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            1111111222222223334455666677665 79999999999887765

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.97  E-value=5.7e-28  Score=222.83  Aligned_cols=338  Identities=13%  Similarity=0.098  Sum_probs=238.2

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhh---hhhHHHHHHHHH
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL---SVNFWMAVLTRF   77 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~   77 (420)
                      +++++|.|+.|      .|++.+.+.+++.+++++.|++.||+|||+++..+..+.+++.+++..   .++++.+++.|+
T Consensus        29 ~~~~~~~s~~~------~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~  102 (410)
T TIGR00885        29 FQQAFTLTAFQ------AALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLF  102 (410)
T ss_pred             HHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            36789999999      999999999999999999999999999999999999999999888654   468999999999


Q ss_pred             Hhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccC-Ccccccccc---------ccC
Q 014682           78 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY-PNLFSSESL---------FGK  146 (420)
Q Consensus        78 l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~-~~~~gw~~~---------~~~  146 (420)
                      +.|++.|...+. ..++.+..|+++|++.+++.+...++|..++|.+++.+....... ....-++..         -..
T Consensus       103 l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (410)
T TIGR00885       103 ILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDL  182 (410)
T ss_pred             HHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHH
Confidence            999999998886 889999999999999999999999999999999999886421000 000000000         001


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHh--cccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHH
Q 014682          147 FPYFLPCLCISLFAFGVTIAAFW--LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIV  224 (420)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~--l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (420)
                      .+||.++.+.++..++..+...+  .||.++   + +++                  +++.....++++|+|.++...+.
T Consensus       183 ~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~---~-~~~------------------~~~~~~~~~~~~~~~~~~~~~l~  240 (410)
T TIGR00885       183 ASVQTPYMIIGAVVLAVALLIMLTKMPALNH---S-DAK------------------QISFSASLSRLARIRHYREGVIA  240 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---c-ccc------------------cccchhhHHHHHhChhHHHHHHH
Confidence            24667667766655554333322  332111   0 000                  00011234567888888887777


Q ss_pred             HHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 014682          225 YCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTS  304 (420)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (420)
                      .+++........++++.|..+.    ..+.+....+...+.......++++ ++.++.||.++|+.+........+..++
T Consensus       241 ~f~yvg~e~~~~s~l~~y~~~~----~~~~~~~~a~~~~~~~~~~~~vGR~-~~~~l~~r~~~~~~l~i~~~~~~~~~ll  315 (410)
T TIGR00885       241 QFFYVGVQIMCWTFIIQYAVRL----IPGMTAGFAANYNIGAMVIFFISRF-IGTWLISYLAAHKVLMAYAIIGMALCLG  315 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            7777766666667777776432    1244444445555555566677777 7788888889999888887777766666


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhh
Q 014682          305 YPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  380 (420)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  380 (420)
                      ......   ...    .......+++...++|...++..+..+++.+..+.++....  +|+++.|.+.|.+.|..
T Consensus       316 ~~~~~~---~~~----~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~  382 (410)
T TIGR00885       316 SIFAGG---HVG----LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK  382 (410)
T ss_pred             HHHcCC---hHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence            554322   111    12233334566777799999999988877665555555543  99999999999999954

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.97  E-value=1.7e-27  Score=220.46  Aligned_cols=348  Identities=15%  Similarity=0.188  Sum_probs=236.3

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhc-----CCch-hHHHHHHHHHHHHHHHhhh---hhHHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKP-VIIMGTASVVIFNTLFGLS---VNFWMAV   73 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grk~-~l~~~~~~~~~~~~~~~~~---~~~~~l~   73 (420)
                      +|.|.|.+|      +|++..+...  .+..+++|+++||+     |||| .+..+.++.+++....++.   ++++.++
T Consensus        27 ~~~g~~~~~------ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~   98 (402)
T PRK11902         27 TVEGLDIQT------IGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLA   98 (402)
T ss_pred             HHcCCCHHH------HHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHH
Confidence            456999999      9999777775  58999999999999     8765 6888888888888777776   4578888


Q ss_pred             HHHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHH
Q 014682           74 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP  152 (420)
Q Consensus        74 ~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~  152 (420)
                      +..++.+...+...|. .+++.|++|+|||+++.++...+.++|.++++.+++.+.+.      ..|||         ..
T Consensus        99 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~------~~gw~---------~~  163 (402)
T PRK11902         99 GLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR------VLGWG---------NT  163 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc------ccCHH---------HH
Confidence            8888888888888887 99999999999999999999999999999999999988861      12454         44


Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhh
Q 014682          153 CLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHD  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      +.+.++..++..+..++.||+++++++++    +.              +++..+..++++|||.++...+..++.....
T Consensus       164 f~i~a~~~l~~~l~~~~~~e~~~~~~~~~----~~--------------~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~  225 (402)
T PRK11902        164 YLLMAGLMLAGALTTLWAPEPEVPARPPR----SL--------------GEAVVGPLRDFFSRRGAWALLLLIVLYKLGD  225 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcccccccc----hh--------------HHHHHHHHHHHHhCcCHHHHHHHHHHHHhHH
Confidence            46666555554444566777644321110    00              0001123567889998887766655555433


Q ss_pred             hhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHh
Q 014682          233 MAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFS-LLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAML  311 (420)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (420)
                      .....+.+.+..+.     .|+++.+.+......+.. .+++.. +.+++.||+++|+.+..+..+..+..+.+......
T Consensus       226 ~~~~~~~~~~l~~~-----~G~~~~~~g~~~~~~~~~~~i~g~~-~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~  299 (402)
T PRK11902        226 AFAGSLSTTFLIRG-----AGFSAGEVGIVNKTLGLAATIVGAL-AGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT  299 (402)
T ss_pred             HHHHHHHHHHHHHh-----cCCCHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33323333343332     689999999988665554 566655 78888888898888776665554444333221111


Q ss_pred             hhhHHHHHHHH---HHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCC
Q 014682          312 SGFGLAFLLNC---ASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASF  388 (420)
Q Consensus       312 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~  388 (420)
                      .. ..+.....   ..+..+.......+....++++..|.++    .+..+....++...++.+.|.++|..        
T Consensus       300 ~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~--------  366 (402)
T PRK11902        300 PK-HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAY--------  366 (402)
T ss_pred             CC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence            11 11211111   1123334444555666666666666544    45556666778877777999999998        


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhh
Q 014682          389 LPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       389 ~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                        |++..|.+.+.+++++.++.+.
T Consensus       367 --G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        367 --GWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             --ChHHHHHHHHHHHHHHHHHHHH
Confidence              8999999999888888766554

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.4e-30  Score=227.92  Aligned_cols=342  Identities=18%  Similarity=0.116  Sum_probs=227.9

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      ++.+|+++++      .|++.+.+.+.+++++|+.|+++||++||+++.+|..++.++.+.++++..||++.++|.+.|+
T Consensus        60 ~~~fni~~s~------~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGi  133 (493)
T KOG1330|consen   60 QTYFNISDSE------LGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGI  133 (493)
T ss_pred             HHhcCCCchh------ccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5788999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCcccc-ccccccCccchHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS-SESLFGKFPYFLPCLCISLF  159 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~  159 (420)
                      |++.+.|. +.+++|.+|+++|++++++++.+.++|..+|.+.+..+.+       ..+ ||+.|         ...+++
T Consensus       134 GeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~-------~~~~Wr~af---------~~~avl  197 (493)
T KOG1330|consen  134 GEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVAS-------LTFWWRWAF---------RGSAVL  197 (493)
T ss_pred             chhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeecc-------CccceEEEE---------EeehHH
Confidence            99999998 9999999999999999999999999999999999998887       333 55554         345555


Q ss_pred             HHHH-HHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHH
Q 014682          160 AFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEI  238 (420)
Q Consensus       160 ~~~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (420)
                      .++. ++..++.+|+++..+.+.+.+.+.           ........++.+.+.|++.+....+.+....+...++.-+
T Consensus       198 ~vi~~~L~~~f~~eP~rga~~~~~~~~~~-----------~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww  266 (493)
T KOG1330|consen  198 GVIVGLLVFLFVREPERGARDEVDGENKM-----------VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWW  266 (493)
T ss_pred             HHHHHHHHHhhccCcccccccccccCCcC-----------CCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchh
Confidence            5543 445566777665432222211110           0001111233455566666666556555555555555556


Q ss_pred             HHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHH-------HHHHHHHHH
Q 014682          239 FSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL----GPIMVARIAGVLT-------IPLLTSYPY  307 (420)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-------~~~~~~~~~  307 (420)
                      .|.+.+.....  .|++......+..+...++.++.+ .++.++||+    .+....+...+.+       +..+.+.+.
T Consensus       267 ~p~~~~~~~~~--~~~~~~~~~ifg~vt~~~G~lGvl-~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~  343 (493)
T KOG1330|consen  267 APAFIYYSYEL--IGFDHNATLIFGGVTCAGGSLGVL-FGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPA  343 (493)
T ss_pred             hhhHHHHHHHH--hCCccccchhhhhHHHhhchhhhe-ehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHh
Confidence            66555443322  345555555555555666666655 666666663    2212222222111       111112211


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHhhhHHHHH-HHHHHhhhcCCcchhhHHhhHHHHHHH-HHHHHhhhhhhHHHHhhhhcc
Q 014682          308 IAMLSGFGLAFLLNCASVVKNLLSVSIIT-GLFILQNRAVDQDQRGAANGIAMTGMS-LFKAAGPAGGGALFSWAQKRL  384 (420)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~g~~~~g~l~~~~~~~~  384 (420)
                      ...    .... .....++.+......+. ....+..+.+||++|.++.++-..+.. +|.+-+|.+.|.+.|+..+..
T Consensus       344 ~~~----~s~~-~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  344 FTS----SSMI-FGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             hhh----HHHH-HHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            111    1111 11111212222222222 333566788999999999999888875 555556669999999986554

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.3e-28  Score=226.52  Aligned_cols=342  Identities=15%  Similarity=0.109  Sum_probs=244.0

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG   80 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G   80 (420)
                      +.+|.+...++      .+.+.+++.++++++.++.+.+.||++-.+.+..+.+++++..++....+|++.+++.|++.|
T Consensus        72 ~~edl~~~~~~------l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llG  145 (495)
T KOG2533|consen   72 LKEDLKLVGNQ------LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLG  145 (495)
T ss_pred             Cccccchhhhh------hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            35778888888      999999999999999999999999999999999999999999888888999999999999999


Q ss_pred             hhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHH
Q 014682           81 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF  159 (420)
Q Consensus        81 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  159 (420)
                      +.++...|+ ..+++.|+.+++|++.++++.+..++|.++|++++..+.+ ..+-....|||+.|         ++.+++
T Consensus       146 l~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~-~~~~~~~~gW~~~F---------iI~G~i  215 (495)
T KOG2533|consen  146 LFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK-LNGSGGLAGWRWLF---------IIEGVI  215 (495)
T ss_pred             HHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh-hcCCCCcCCceeeh---------hHHHHH
Confidence            999999998 9999999999999999999999999999999999999765 22333366777666         777777


Q ss_pred             HHHH-HHHHHhcccccCCCCCCCCcccchh-HhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHH
Q 014682          160 AFGV-TIAAFWLPETLHRHNDDDDSCDVSY-DALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSE  237 (420)
Q Consensus       160 ~~~~-~~~~~~l~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (420)
                      .+.. ++..+++|+.|.+..-.+++++... ++.++...+.. +++.+....++.+++|..|...+..++......++.+
T Consensus       216 ~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~  294 (495)
T KOG2533|consen  216 TLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGI-ENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSY  294 (495)
T ss_pred             HHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCc-ccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHH
Confidence            7664 5567889999876533222222111 11111111111 1114556788999999999999999999999999999


Q ss_pred             HHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHH-HHHHHHHHhh
Q 014682          238 IFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL----GPIMVARIAGVLTIPLL-TSYPYIAMLS  312 (420)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~  312 (420)
                      +.|.|+.+.     .|++..++..+..+..++++++.+ +.+++.||.    .+|........+..... ..+.......
T Consensus       295 ~lpl~l~~~-----~~~s~~~a~~ls~~~~~~g~v~~i-~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~  368 (495)
T KOG2533|consen  295 WLPLYLKSN-----GGYSELQANLLSTPYDVGGIVGLI-LAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLP  368 (495)
T ss_pred             HHHHHHHcC-----CCcChHHhccccchHHhhhHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            999999763     689999999999999999999977 788888884    34443333333322222 2222221111


Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHH-hhHHHHHHHHHHHHhhh
Q 014682          313 GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAA-NGIAMTGMSLFKAAGPA  371 (420)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~~~~~~~g~~~g~~  371 (420)
                            ......+..........+......++...++.|... .+......+.++.++|.
T Consensus       369 ------~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~  422 (495)
T KOG2533|consen  369 ------GAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQ  422 (495)
T ss_pred             ------HHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhh
Confidence                  111112222233445556666666666655444333 33333334444444443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.97  E-value=3.4e-28  Score=226.60  Aligned_cols=353  Identities=12%  Similarity=0.075  Sum_probs=226.6

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHh---hhhh-----HHHHH
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---LSVN-----FWMAV   73 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~---~~~~-----~~~l~   73 (420)
                      ++++|+|+.+      .|++.+++.+++.++++++|+++||+|||++++.+..+.++......   .++.     +....
T Consensus        38 ~~~~g~s~~~------~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (420)
T PRK09528         38 HDINGLSGTD------TGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAI  111 (420)
T ss_pred             HHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568999999      99999999999999999999999999999999887666554433221   1111     11122


Q ss_pred             HHHHHhhhhccchhhhHhhhhhhch--hhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchH
Q 014682           74 LTRFLLGSLNGLLGPIKAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL  151 (420)
Q Consensus        74 ~~r~l~G~~~g~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~  151 (420)
                      +.++..|.+.....+.   +.++.+  ++++++.++......++|..++|++++.+.+        .+|+         .
T Consensus       112 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~--------~~~~---------~  171 (420)
T PRK09528        112 VGGIYLGFGFLAGAGA---IEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN--------INPQ---------I  171 (420)
T ss_pred             HHHHHhhhhhccchhh---hhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh--------cCch---------H
Confidence            2333334333333332   233322  3456778889999999999999999999875        2444         3


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhh
Q 014682          152 PCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLH  231 (420)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (420)
                      ++...++..++..+..+..+++++++++.++++++             ++++.+.++.++.+|||+++...+........
T Consensus       172 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~  238 (420)
T PRK09528        172 NFWLGSGSALILLVLLFFAKPDAPSTAKVANALGA-------------NASAVSLKDALALLKLPKFWFLVLYVIGVACF  238 (420)
T ss_pred             hHHHHHHHHHHHHHHHhcccccccchhhhccchhc-------------ccccccHHHHHHHccCCCeEeehHHHHHHHHH
Confidence            34555555555444444443332221111000000             00111112345677888876655544444333


Q ss_pred             hhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHh
Q 014682          232 DMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAML  311 (420)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (420)
                      ........|.|..+..  .+.+.+..+.+.+.+...+...++.+ ..+++.||+++|+.+..+.++..+...+..+..+ 
T Consensus       239 ~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~-  314 (420)
T PRK09528        239 YDVFDQQFPNFFASFF--ATPEQGTRVFGYLNSFQVFLEALIMF-FAPFIINRIGAKNALLLAGTIMAVRIIGSGFATG-  314 (420)
T ss_pred             HHHHHHHHHHHHHHHH--hccCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcchhhHHHHHHHHHHHHHHHhccc-
Confidence            3444445666654331  11356677888988888888888876 7788889999999888877777766665544321 


Q ss_pred             hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhH-HHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCC
Q 014682          312 SGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI-AMTGMSLFKAAGPAGGGALFSWAQKRLDASFLP  390 (420)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~  390 (420)
                          .+. +.....+.+.......+....+.++..|++.+++..+. .+....+|.+++|.+.|.+.|..          
T Consensus       315 ----~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~----------  379 (420)
T PRK09528        315 ----PLE-VSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI----------  379 (420)
T ss_pred             ----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh----------
Confidence                111 22333333444444555666778888999999988776 67778999999999999999988          


Q ss_pred             CchHHHHHHHHHHHHHHHHHhh
Q 014682          391 GSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       391 g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      ||+..|...+++.++..++.+.
T Consensus       380 G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        380 GFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             CchHHHHHHHHHHHHHHHHHHH
Confidence            8999999988888777665554

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.2e-29  Score=214.73  Aligned_cols=347  Identities=18%  Similarity=0.168  Sum_probs=261.4

Q ss_pred             cccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhc
Q 014682            4 DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLN   83 (420)
Q Consensus         4 ~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   83 (420)
                      +.+.++++      +|++.+.+.+.+.+.+++.|.+.||+|+|..+++|+..+..+++++++.++++.++++|.+||+|.
T Consensus       100 ~~~~e~~~------iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgs  173 (464)
T KOG3764|consen  100 SLDRENTQ------IGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGS  173 (464)
T ss_pred             Cccccccc------hhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhH
Confidence            34445566      999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhh-Hhhhhhhchhh-hhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHH
Q 014682           84 GLLGPI-KAYACEIFREE-HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAF  161 (420)
Q Consensus        84 g~~~~~-~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~  161 (420)
                      +....+ .++++|.+|++ +|++++|+...+.++|..+||+.||.+++                ..+.+.+|++.++..+
T Consensus       174 A~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe----------------~~Gk~aPFlVL~~v~L  237 (464)
T KOG3764|consen  174 AFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYE----------------FAGKSAPFLVLAIVLL  237 (464)
T ss_pred             HHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHh----------------hcCCcCcHHHHHHHHH
Confidence            999888 99999999965 57999999999999999999999999999                3345566688888777


Q ss_pred             HHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHHH
Q 014682          162 GVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSL  241 (420)
Q Consensus       162 ~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (420)
                      .-..+.+++-|+.+..++.                      ..+....++++++|.++.........+.........++.
T Consensus       238 ld~~L~l~vi~p~~~~~~~----------------------~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlsl  295 (464)
T KOG3764|consen  238 LDGALQLLVIEPTEMDPDS----------------------TEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSL  295 (464)
T ss_pred             HHHHHHHheeCccccCccc----------------------cccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHH
Confidence            7655555544332222111                      112245788999999988777777777666777777888


Q ss_pred             hhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH--HHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014682          242 WANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVA--RIAGVLTIPLLTSYPYIAMLSGFGLAFL  319 (420)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (420)
                      |..+.     +.-+.-+.|..+....+...++.. +.+.+.||++..+.+  ..+.+.........++.....  ..|..
T Consensus       296 wm~e~-----m~~p~w~~G~~fLp~~~~y~ig~~-lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~--~L~vp  367 (464)
T KOG3764|consen  296 WMLET-----MFTPGWEVGLAFLPASLSYAIGTN-LFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA--QLWVP  367 (464)
T ss_pred             HHHHh-----ccCCCcceeeeecccccchhccCc-hHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH--HHhhh
Confidence            87665     554444788888888888888877 667777887843333  334444444444444444322  23444


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhhcCC--cchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHH
Q 014682          320 LNCASVVKNLLSVSIITGLFILQNRAVD--QDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFF  397 (420)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~  397 (420)
                      ....++..+.....+.|....++.....  -+.-|...++......+|.++||.++|.+++..          |+++...
T Consensus       368 ~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~i----------GF~wl~~  437 (464)
T KOG3764|consen  368 NFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAI----------GFEWLMT  437 (464)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeeh----------hHHHHHH
Confidence            4445555555566666666655544222  126689999999999999999999999999998          8998888


Q ss_pred             HHHHHHHHHHHHHhh
Q 014682          398 VLNVVEAIGVLMTFK  412 (420)
Q Consensus       398 ~~~~~~~~~~~~~~~  412 (420)
                      ..+...++..-+...
T Consensus       438 iig~~n~iyapvl~l  452 (464)
T KOG3764|consen  438 IIGILNLIYAPVLLL  452 (464)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888887776544433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.97  E-value=1e-27  Score=221.76  Aligned_cols=353  Identities=13%  Similarity=0.118  Sum_probs=235.9

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHh---hh-----hhHHHHH
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---LS-----VNFWMAV   73 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~---~~-----~~~~~l~   73 (420)
                      .+++|.++.+      .|++.+++.+++.+++++.|+++||+|||+.++.++...+++.....   +.     +.+..++
T Consensus        30 ~~~~g~s~~~------~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (396)
T TIGR00882        30 HDVNGLSKTD------TGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAI  103 (396)
T ss_pred             HHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            4568999999      99999999999999999999999999999999887766655443321   12     2234456


Q ss_pred             HHHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHH
Q 014682           74 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP  152 (420)
Q Consensus        74 ~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~  152 (420)
                      +.|++.|++.+...+. ..+..|..  +++++.++......++|.++||.+++.+.+        .+||         .+
T Consensus       104 ~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~--------~~~~---------~~  164 (396)
T TIGR00882       104 VGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS--------IDPQ---------IV  164 (396)
T ss_pred             HHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc--------cCch---------HH
Confidence            7788899888877776 66666643  334567788888889999999999998864        2444         44


Q ss_pred             HHHHHHHHHHHHHHHHh-cccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhh
Q 014682          153 CLCISLFAFGVTIAAFW-LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLH  231 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~-l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (420)
                      +...++..++..+..+. .||++++++. ++..+             +++++++.++.++++|||+++...+..++....
T Consensus       165 f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~  230 (396)
T TIGR00882       165 FWLGSGFALILMLLLMFAKPKAPSSATV-ANALG-------------ANASAFSLKLALELFRQRKFWMFVLYVVGVACV  230 (396)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCchhhhh-hcccc-------------cccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            45666555554433333 3433221110 00000             000111223457788999887666655554444


Q ss_pred             hhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHh
Q 014682          232 DMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAML  311 (420)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (420)
                      ......+.+.|..+...  +.+.+....|...+...+...++.. ..+++.||.++|+.+..+..+..+.........+ 
T Consensus       231 ~~~~~~~~~~y~~~~~~--~~~~~~~~~g~~~~~~~i~~~~~~~-~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~-  306 (396)
T TIGR00882       231 YDVFDQQFANFFTSFFA--TPQQGTRVFGYVTTMGELLNALIMF-CAPLIINRIGAKNALLIAGTIMSVRIIGSSFATT-  306 (396)
T ss_pred             HHHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCC-
Confidence            44454566667654421  1355667778888888888888776 6678888889999888887776666555443221 


Q ss_pred             hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhH-HHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCC
Q 014682          312 SGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI-AMTGMSLFKAAGPAGGGALFSWAQKRLDASFLP  390 (420)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~  390 (420)
                          .+. +.....+.+...............+..|++.++++.+. .+....+|+.++|.+.|.+.|..          
T Consensus       307 ----~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~----------  371 (396)
T TIGR00882       307 ----ALE-VVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI----------  371 (396)
T ss_pred             ----hHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc----------
Confidence                111 22223333333333333444566677788888887776 57788999999999999999998          


Q ss_pred             CchHHHHHHHHHHHHHHHHHhh
Q 014682          391 GSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       391 g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      |++.+|.+.+++.++..+...+
T Consensus       372 G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       372 GFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999888877665543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.97  E-value=4.5e-28  Score=252.43  Aligned_cols=344  Identities=15%  Similarity=0.083  Sum_probs=243.7

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhh-Hh
Q 014682           16 SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM---GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KA   91 (420)
Q Consensus        16 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~   91 (420)
                      .+.++..+++.+++.++++++|+++||+|||+++..   ..+...+..+.....++++.++++|+++|++.+...|+ .+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a  131 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence            347889999999999999999999999999998633   22233333333334589999999999999999999998 99


Q ss_pred             hhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHHHHHHhcc
Q 014682           92 YACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  171 (420)
Q Consensus        92 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  171 (420)
                      ++.|++|+++|++++++.+++.++|.++||++++++.+       ..+|+         ..++...+..+..++..+++|
T Consensus       132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~-------~~~~~---------~~~~~~~~~~~~~~~~~~~~~  195 (1140)
T PRK06814        132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI-------SGNFV---------ILVALLMGIAVLGWLASLFIP  195 (1140)
T ss_pred             hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh-------ccccH---------HHHHHHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999999999998       44544         333444444444555566777


Q ss_pred             cccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCc
Q 014682          172 ETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG  251 (420)
Q Consensus       172 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (420)
                      ++++..+..+.+.... +              .....++.+.++|.++...+..++..+.......+.|.|..+.     
T Consensus       196 ~~~~~~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----  255 (1140)
T PRK06814        196 KTGNAAPDLKIDRNII-R--------------STITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET-----  255 (1140)
T ss_pred             CCCCCCCCCeeccchH-H--------------HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----
Confidence            6654322111110000 0              0012356778899998888887777776667777888888765     


Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH---------------HhhhhHH
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA---------------MLSGFGL  316 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~  316 (420)
                      +|.++...|.+.+..+++.+++++ ..+++.++..+++.+..+.++..+..+.+.+..               .......
T Consensus       256 ~g~~~~~~g~~~~~~~~g~~ig~~-~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (1140)
T PRK06814        256 LGGDENVATLFLAVFSVGVAVGSF-LASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHG  334 (1140)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHH-HHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccccc
Confidence            788999999999999999999988 556666554555544444444333333222210               0000111


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHH
Q 014682          317 AFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVF  396 (420)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f  396 (420)
                      + .+.+..++.+++.....+...+++++..|++.+|+++|+.+++..++..+++.+.|.+.+...         ++...+
T Consensus       335 ~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~---------~~~~~~  404 (1140)
T PRK06814        335 W-RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGF---------SIPWII  404 (1140)
T ss_pred             H-HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhcc---------CHHHHH
Confidence            2 233444455566677777888999999999999999999999999999999999999986431         555566


Q ss_pred             HHHHHHHHHH
Q 014682          397 FVLNVVEAIG  406 (420)
Q Consensus       397 ~~~~~~~~~~  406 (420)
                      ++.+.+.++.
T Consensus       405 ~~~~~~~~~~  414 (1140)
T PRK06814        405 LFIALANLIV  414 (1140)
T ss_pred             HHHHHHHHHH
Confidence            5555544443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.97  E-value=9.3e-28  Score=251.03  Aligned_cols=351  Identities=17%  Similarity=0.094  Sum_probs=243.9

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHhhhhccchhhh-Hh
Q 014682           16 SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLLGPI-KA   91 (420)
Q Consensus        16 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~-~~   91 (420)
                      .+.+++.+++.+++.++++++|+++||+|||++++.+.++..+..++..   .+++++.+++.|+++|++.+...+. .+
T Consensus        47 ~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  126 (1146)
T PRK08633         47 ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYG  126 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHh
Confidence            4479999999999999999999999999999999998877666555443   4578999999999999999999888 99


Q ss_pred             hhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccc-cCCccccccccccCccchHHHHHHHHHHHHHHHHHHhc
Q 014682           92 YACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE-KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  170 (420)
Q Consensus        92 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (420)
                      ++.|++|+++|++++++...+.++|.++||.+++++.+... ..+..++|       .++...+......++.++..+.+
T Consensus       127 ~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  199 (1146)
T PRK08633        127 IIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILG-------RIAPAGLVLLAVAVLGLIFAYRL  199 (1146)
T ss_pred             hhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-------chHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999986200 00000111       11122222223333334455667


Q ss_pred             ccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCC
Q 014682          171 PETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLG  250 (420)
Q Consensus       171 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (420)
                      ||+++....+.++....  .           .+......+.+++++.++...+..++..........++|.|....    
T Consensus       200 ~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  262 (1146)
T PRK08633        200 PKVPAAAPEVFDKKKYL--F-----------PKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEV----  262 (1146)
T ss_pred             cCCCCCCcccccccccc--c-----------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----
Confidence            77765433211010000  0           000112345677888888776666666555555666777777655    


Q ss_pred             ccCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 014682          251 GLNYSTQ-MVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  329 (420)
Q Consensus       251 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (420)
                       +|++.. ..+.+.+..+++.+++++ +.+++.||.++++.+.++.++..++.+.+.+..      ......+..++.++
T Consensus       263 -~g~s~~~~~g~~~~~~~ig~~~g~~-~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~  334 (1146)
T PRK08633        263 -LGLDNTFQVQYLLAASAIGIGIGSL-LAGRLSGRHIELGLVPLGALGLALSLFLLPTAP------SLASVLVLFFLFGF  334 (1146)
T ss_pred             -hCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHhCCceEccchhHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHH
Confidence             688888 899999998988888887 777888888887777777666665555544332      12223334444555


Q ss_pred             hhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHH
Q 014682          330 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGV  407 (420)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~  407 (420)
                      +.....+...+++.+..|++.||+++|+.+.+.+++..+++.+.+.+....         .++...+.+.+.+.++..
T Consensus       335 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~  403 (1146)
T PRK08633        335 SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLG---------LSPAGLFYLIALVTLIGT  403 (1146)
T ss_pred             HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc---------cCHHHHHHHHHHHHHHHH
Confidence            566667778888889999999999999999999999988887776665421         134455555555544443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.96  E-value=9.2e-27  Score=218.59  Aligned_cols=375  Identities=12%  Similarity=0.046  Sum_probs=242.6

Q ss_pred             ccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhc
Q 014682            5 FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLN   83 (420)
Q Consensus         5 ~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   83 (420)
                      +|.+..+      .+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.++++|.+.|++.
T Consensus        43 lg~s~~~------ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~  116 (475)
T TIGR00924        43 LGFSQEQ------AFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGS  116 (475)
T ss_pred             CCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhcc
Confidence            8899999      9999999999999999999999999 89999999999999999999999999999999999999999


Q ss_pred             cchhhh-Hhhhhhhchhhh---hhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHH
Q 014682           84 GLLGPI-KAYACEIFREEH---QALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF  159 (420)
Q Consensus        84 g~~~~~-~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  159 (420)
                      |...|. .++++|++|+++   |++++++...+.++|.++||++++.+.+       ..||+..|         ...++.
T Consensus       117 g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~-------~~g~~~~f---------~~~~~~  180 (475)
T TIGR00924       117 GLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE-------NYGYHVGF---------NLAAVG  180 (475)
T ss_pred             ccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH-------hcChHHHH---------HHHHHH
Confidence            998887 899999998754   8889999999999999999999999987       45555444         454443


Q ss_pred             HHHHHHHHHhcccccCCCCCCC---C-cccchhHhhh-----------h----hhh-hh---------------hhhhcC
Q 014682          160 AFGVTIAAFWLPETLHRHNDDD---D-SCDVSYDALE-----------S----ASA-EV---------------KEEEGR  204 (420)
Q Consensus       160 ~~~~~~~~~~l~e~~~~~~~~~---~-~~~~~~~~~~-----------~----~~~-~~---------------~~~~~~  204 (420)
                      .++..+.....++..++.+.++   + ++++......           .    ... ..               .++..+
T Consensus       181 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (475)
T TIGR00924       181 MVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFK  260 (475)
T ss_pred             HHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333333332221111101   0 0000000000           0    000 00               000000


Q ss_pred             CCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHH---HH
Q 014682          205 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP---FL  281 (420)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~  281 (420)
                      +.....+..|.+.+....+...++........+.++.+..+....+-.+++ ...+.+.+.+++..++.+.+...   .+
T Consensus       261 ~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~-ip~~~~~~~n~~~iil~~p~~~~~~~~l  339 (475)
T TIGR00924       261 PRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMS-VPVIWFQSLNPFWVVVGSPVLAMIWTRL  339 (475)
T ss_pred             ccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceE-ECHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            111111112222333334444444444444445555555443211111111 22567777777777777765443   34


Q ss_pred             HHh-hchHHHH--HHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHh
Q 014682          282 ERI-LGPIMVA--RIAGVLTIPLLTSYPYIAML---SGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN  355 (420)
Q Consensus       282 ~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  355 (420)
                      .|| .+++...  ..+.++..++..........   ........+....++.+.+.....|....+..+..|++.||+++
T Consensus       340 ~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~  419 (475)
T TIGR00924       340 GRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQML  419 (475)
T ss_pred             HhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence            443 2223333  55666666665554432110   01123334556667777889999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          356 GIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       356 g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      |+......+|..+++.+.....+..          ++...|...+.++++..++.+.
T Consensus       420 g~~~l~~~~g~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  466 (475)
T TIGR00924       420 GMWFLAQAMGSLLGGYLATFGAVPQ----------GVTGVFGKIGLVTLLVGVVMAL  466 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc----------chhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988887766544          5777777777777766655544

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=2.2e-27  Score=225.71  Aligned_cols=372  Identities=13%  Similarity=0.097  Sum_probs=255.1

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhh-Hhhhhhh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI   96 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~   96 (420)
                      .+++.+...++..+++++.|+++|++|||+.++.+.+.+.++.+++++++|+++++++|+++|+|.|..... +.+++|.
T Consensus        91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEi  170 (513)
T KOG0254|consen   91 QGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEI  170 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhc
Confidence            589999999999999999999999999999999999999999999999999999999999999998887776 9999999


Q ss_pred             chhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHHHHHHhcccccCC
Q 014682           97 FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR  176 (420)
Q Consensus        97 ~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~  176 (420)
                      .|++.|+...+..+....+|..++..++....+       .        .++||.++.+..+++++..+..+++||+|++
T Consensus       171 ap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~-------~--------~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~  235 (513)
T KOG0254|consen  171 APAHIRGTLVSLYQLFITIGILLGYCINYGTSK-------V--------YAGWRIPLGLALIPAVILALGMLFLPESPRW  235 (513)
T ss_pred             CChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc-------C--------CccHHHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence            999999999999999999999999666555443       1        0246666788888888877778999999988


Q ss_pred             CCCCCCcccch--hHhhhh------------hh-hhhhhhhcCCC-CchhhhccchhHHHHHHHHHHHHhhhhhHHHHHH
Q 014682          177 HNDDDDSCDVS--YDALES------------AS-AEVKEEEGREA-TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFS  240 (420)
Q Consensus       177 ~~~~~~~~~~~--~~~~~~------------~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (420)
                      ..++.+.++..  ...+..            .. ....+....+. ....++++++......+...+..+.+........
T Consensus       236 L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~  315 (513)
T KOG0254|consen  236 LIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVF  315 (513)
T ss_pred             HHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEE
Confidence            55433222111  111111            00 00001111111 1244455422333333344443333333322222


Q ss_pred             HhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhh-------
Q 014682          241 LWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG-------  313 (420)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  313 (420)
                      .|..+.  .+..|.+... .....+.++...++.. ++..+.||.|||+.+..+...+.++.+++........       
T Consensus       316 ~Y~~~i--f~~~g~~~~~-~~~~~~~~~v~~~~t~-~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~  391 (513)
T KOG0254|consen  316 YYSTTI--FKSAGLKSDT-FLASIILGVVNFLGTL-VATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSK  391 (513)
T ss_pred             eehHHH--HHhcCCCCch-HHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCccc
Confidence            232222  2223444332 3344444566666655 5577788889999999999988888877665543321       


Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCch
Q 014682          314 FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQ  393 (420)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~  393 (420)
                      ...+..+....+....+..+..|..+.+.+|.+|.+.|+++.++...++++...+-....-.+.+..          +..
T Consensus       392 ~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~----------~~~  461 (513)
T KOG0254|consen  392 GAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEAL----------GIG  461 (513)
T ss_pred             chhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------ccc
Confidence            2234445555555666777888888899999999999999999999999888877665555554443          224


Q ss_pred             HHHHHHHHHHHHHHH-HHhhhhhhccC
Q 014682          394 MVFFVLNVVEAIGVL-MTFKPFLAQRH  419 (420)
Q Consensus       394 ~~f~~~~~~~~~~~~-~~~~~~~~~~~  419 (420)
                      ..|..++.++.+... +.+. ..||++
T Consensus       462 ~~f~~f~~~~~~~~~~fv~~-~~pETk  487 (513)
T KOG0254|consen  462 GTFGYFGGICLLSLIIFVFF-FVPETK  487 (513)
T ss_pred             chHHHHHHHHHHHHHHHheE-EcccCC
Confidence            566666666666666 5555 678765

>TIGR00901 2A0125 AmpG-related permease

Probab=99.96  E-value=4.1e-27  Score=214.70  Aligned_cols=321  Identities=11%  Similarity=0.160  Sum_probs=225.1

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhc-----CCchh-HHHHHHHHHHHHHHHhhh---hhHHHH
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPV-IIMGTASVVIFNTLFGLS---VNFWMA   72 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grk~~-l~~~~~~~~~~~~~~~~~---~~~~~l   72 (420)
                      .+|+|+|.+|      .|+..+. .+...+ .+++|+++||+     ||||. ++.+.++.++.....++.   .+.+.+
T Consensus        15 ~~~~g~s~~~------~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l   86 (356)
T TIGR00901        15 LRSKNVSLKT------IGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLL   86 (356)
T ss_pred             HHHcCCCHHH------HHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence            4788999999      9999755 555555 99999999998     89887 467777777777777776   466677


Q ss_pred             HHHHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchH
Q 014682           73 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL  151 (420)
Q Consensus        73 ~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~  151 (420)
                      ....++.+.+.+...+. .+++.|++|+|+|+++.++...+.++|.++++.+++.+.+       ..|.+. +.+++||.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-------~~g~~~-~~~~~wr~  158 (356)
T TIGR00901        87 AGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS-------PEFANT-GLITLWGY  158 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh-------hccccc-ccccccHH
Confidence            77788888888877777 9999999999999999999999999999999999999887       444222 12556777


Q ss_pred             HHHHHHHHHHHHHHHHH-hcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchh---HHHHHHHHHH
Q 014682          152 PCLCISLFAFGVTIAAF-WLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP---LMSSIIVYCV  227 (420)
Q Consensus       152 ~~~~~~~~~~~~~~~~~-~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  227 (420)
                      ++.+.++..++..+..+ ..||+++.++.   ++++.               ++.....++++|+|.   ++...+..++
T Consensus       159 ~f~i~ai~~l~~~~~~~~~~~e~~~~~~~---~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (356)
T TIGR00901       159 IFFWTALLILPGLLVTLFLAKEPQEDASV---PKPLT---------------QAVLKPIREFFQRKNMIQALLLLLLIVL  220 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCccccc---chhHH---------------HHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence            77877776666555444 34664321111   00000               000113455666664   5555555555


Q ss_pred             HHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHH-HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 014682          228 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF-SLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYP  306 (420)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (420)
                      ..........+.+.|..+      .|+++.+.+......+. ..+++.+ +++++.||+++|+.+..+.++..+....+.
T Consensus       221 ~~~~~~~~~~~~~~~l~~------~g~~~~~~g~~~~~~~~~~~~~g~~-~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~  293 (356)
T TIGR00901       221 YKLGDSAATVLTTLFLLD------MGFSKEEIALVAKINGLLGAILGGL-IGGIIMQPLNILYALLLFGIVQALTNAGFV  293 (356)
T ss_pred             HHHHHHHHHHHHHHHHHH------cCCCHHHHHHHhHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            555555666677777643      58899999988887774 4555554 788899999998888887777666655444


Q ss_pred             HHHHhhh-----hHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHH
Q 014682          307 YIAMLSG-----FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS  363 (420)
Q Consensus       307 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  363 (420)
                      +......     ......+....++.++......+...++.+|.+|+++||+.+|+.+...+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       294 WLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            4321110     01112233344455666778889999999999999999999999887654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.96  E-value=3.6e-26  Score=214.58  Aligned_cols=383  Identities=13%  Similarity=0.032  Sum_probs=233.3

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchhHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVIFNTLFGLSVNFWM-AVLTRFLL   79 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~   79 (420)
                      ++++|.++++      .+++.+.+.....+..++.|+++|| +||||+++.+.+++.++.+.++++++... ++++|.++
T Consensus        42 ~~~lg~~~~~------a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~  115 (489)
T PRK10207         42 VKQLGFSQEQ------AFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTI  115 (489)
T ss_pred             HHHcCCCHHH------HHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            4678999888      9999999998888899999999999 99999999999999999999999876554 55889999


Q ss_pred             hhhccchhhh-Hhhhhhhchhh--hhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHH
Q 014682           80 GSLNGLLGPI-KAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI  156 (420)
Q Consensus        80 G~~~g~~~~~-~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  156 (420)
                      |++.|...|. .+++.|.+|++  +|.+++++++.+.++|..+||.+++++.+       .+|||+.|         .+.
T Consensus       116 ~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~-------~~gw~~~F---------~i~  179 (489)
T PRK10207        116 AVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD-------KFGYSVTY---------NLC  179 (489)
T ss_pred             HhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH-------hhChHHHH---------HHH
Confidence            9999999887 99999999876  45789999999999999999999999998       56666555         444


Q ss_pred             HHHHHHHHHHHHhcccccCCCCCC--C---Ccccchh------------Hhhhhhhhhhh--------------hhhcCC
Q 014682          157 SLFAFGVTIAAFWLPETLHRHNDD--D---DSCDVSY------------DALESASAEVK--------------EEEGRE  205 (420)
Q Consensus       157 ~~~~~~~~~~~~~l~e~~~~~~~~--~---~~~~~~~------------~~~~~~~~~~~--------------~~~~~~  205 (420)
                      ++..+..++.....++..++.+.+  +   |......            ....+......              -.++.+
T Consensus       180 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~  259 (489)
T PRK10207        180 GAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFK  259 (489)
T ss_pred             HHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            332232233333333322211101  0   1001000            00000000000              000000


Q ss_pred             CCchhhhccchhHHHHHHH--HHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014682          206 ATPKKSLLKNWPLMSSIIV--YCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER  283 (420)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  283 (420)
                         ..+.+|+|.+....+.  ..++..........++.|.++.......|+... ...+.+.+.+..++.+.+ .+++.+
T Consensus       260 ---~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~-~~~~~~~n~~~iii~~pl-~~~l~~  334 (489)
T PRK10207        260 ---LDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSIN-PVSFQALNPFWVVVASPI-LAGIYT  334 (489)
T ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEEC-HHHHHhHhHHHHHHHHHH-HHHHHH
Confidence               1145566665443322  222223333333455566653222222233321 223333444445455553 345666


Q ss_pred             hhchHH-------HHHHHHHHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhh
Q 014682          284 ILGPIM-------VARIAGVLTIPLLTSYPY----IAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRG  352 (420)
Q Consensus       284 ~~~~~~-------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  352 (420)
                      |.++|+       .+..+.++..++.+....    ............+....++.+.+.....|.....+.+..|++.+|
T Consensus       335 rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g  414 (489)
T PRK10207        335 HLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMG  414 (489)
T ss_pred             HHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHH
Confidence            666664       355666666555543221    111111112223445566677888889999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014682          353 AANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       353 ~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~  411 (420)
                      .++|+.+...++|+.++..+.+.........+.......+...|...+...+++.++.+
T Consensus       415 ~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~  473 (489)
T PRK10207        415 FILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMA  473 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999877765432111000000011356677777766665544443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.96  E-value=4.7e-26  Score=213.77  Aligned_cols=335  Identities=16%  Similarity=0.106  Sum_probs=230.4

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh----cCCch-hHHHHHHHHHHHHHHHhhhhh------HH
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKP-VIIMGTASVVIFNTLFGLSVN------FW   70 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grk~-~l~~~~~~~~~~~~~~~~~~~------~~   70 (420)
                      .+++|+++.+      .|++.++..+..++..|+.|+++||    +|||| .++.+....+++.+++...++      ..
T Consensus        27 ~~~~g~s~~~------~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~  100 (437)
T TIGR00792        27 TDVLGLSAAF------VGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLV  100 (437)
T ss_pred             HHccCCCHHH------HHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHH
Confidence            4678999999      9999999999999999999999997    67744 567788888888887776653      45


Q ss_pred             HHHHHHHHhhhhccchhhh-Hhhhhhhc-hhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCcc
Q 014682           71 MAVLTRFLLGSLNGLLGPI-KAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  148 (420)
Q Consensus        71 ~l~~~r~l~G~~~g~~~~~-~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~  148 (420)
                      .+++.+++.+++.+...+. .++..|.. ++++|++..++.+.+..+|..+++.+.+.+...       .+..  ....+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~-------~~~~--~~~~g  171 (437)
T TIGR00792       101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSY-------FGGG--DDKFG  171 (437)
T ss_pred             HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCC--ccccc
Confidence            6777888888887776555 88888887 478999999999999999988888777666541       1100  00335


Q ss_pred             chHHHHHHHHHHHHHH-HHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHH
Q 014682          149 YFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV  227 (420)
Q Consensus       149 ~~~~~~~~~~~~~~~~-~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (420)
                      |+..+.+.++..++.. +..+..||++++.+.++++                  +.+..+..+++++||+++...+..++
T Consensus       172 ~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~~~~  233 (437)
T TIGR00792       172 WFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEK------------------KLSLKQIFKALFKNDQLLILCLAYLF  233 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccccc------------------CCCHHHHHHHHhCCHHHHHHHHHHHH
Confidence            6666566666665543 3445667654221110000                  00111235677899998887777666


Q ss_pred             HHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 014682          228 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPY  307 (420)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (420)
                      ............+.|....     .+ ++...+.+.....+..+++.+ +.+++.||+++|+....+..+..++.+...+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~i~~ii~~~-~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~  306 (437)
T TIGR00792       234 YNLAFNIKNGVQVYYFTYV-----LG-DPELFSYMGSIAIVAGLIGVL-LFPRLVKKFGRKILFAGGILLMVLGYLIFFF  306 (437)
T ss_pred             HHHHHHHHcchhheeEeee-----cC-ChHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            6555444443444343322     33 455666666776777777766 6788889999999988887777766655543


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-------cchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhh
Q 014682          308 IAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  380 (420)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  380 (420)
                      ..  .  . .....+...+.+++.....+..+++.+|..|       ++.+|++.|+.+....+|..+++.+.|.+.+..
T Consensus       307 ~~--~--~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~  381 (437)
T TIGR00792       307 AG--S--N-LPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII  381 (437)
T ss_pred             cc--h--h-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            22  1  1 1122233334445555667777788877654       567899999999999999999999999999876


Q ss_pred             h
Q 014682          381 Q  381 (420)
Q Consensus       381 ~  381 (420)
                      +
T Consensus       382 G  382 (437)
T TIGR00792       382 G  382 (437)
T ss_pred             C
Confidence            4

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.95  E-value=1.3e-24  Score=200.62  Aligned_cols=349  Identities=13%  Similarity=0.035  Sum_probs=230.5

Q ss_pred             ccccccccccchhhhhHHH--HHHHHHHHHHhhhhhhh-hhhhcCCchhHHHHHHHH-HHHHHHHh---hhhh-HHHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYV--GSSFMFGRALTSVFWGL-VADRYGRKPVIIMGTASV-VIFNTLFG---LSVN-FWMAVL   74 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~--~s~~~~~~~~~~~~~g~-l~dr~Grk~~l~~~~~~~-~~~~~~~~---~~~~-~~~l~~   74 (420)
                      +|.|.|.++      +|++  .+...+...+.+|+++. ..||+||||..++.+.+. .+.....+   ...+ ...++.
T Consensus        29 ~~~g~~~~~------iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (390)
T TIGR02718        29 REDGAPLTA------LAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVG  102 (390)
T ss_pred             HHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHH
Confidence            677899999      9997  46778888889999855 799999999875554332 22222222   2222 333444


Q ss_pred             HHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHH
Q 014682           75 TRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPC  153 (420)
Q Consensus        75 ~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~  153 (420)
                      .-++.++..+...+. .++..|..++++++...+....+..+|.++|+...+++.+       .+|||.         ++
T Consensus       103 ~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~-------~~gw~~---------~f  166 (390)
T TIGR02718       103 LLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG-------KFGQRP---------AF  166 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCHHH---------HH
Confidence            445555666666666 7888888888888888888888889999999999889988       455554         44


Q ss_pred             HHHHHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhh
Q 014682          154 LCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM  233 (420)
Q Consensus       154 ~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (420)
                      .+.++..++..+..++++|+++++++++   +                  ++..+.++.+|+|.++......++......
T Consensus       167 ~~~a~l~~~~~~~~~~~~~~~~~~~~~~---~------------------~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~  225 (390)
T TIGR02718       167 LLVACVPLASLVCVLWLKDRAVASPEAP---L------------------ARRASLFRFFRRPLAWSLLALALLSAMTAV  225 (390)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcCccccc---h------------------hhHHHHHHHHcCcCHHHHHHHHHHHHHHHH
Confidence            6666665554444445544332111000   0                  011235678888888877777777666666


Q ss_pred             hHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014682          234 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG  313 (420)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (420)
                      ....+.+.|..+      .|++++++|......+....+.+.+..+++.||+++++.+..+...................
T Consensus       226 ~~~~~~~~~l~~------~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~  299 (390)
T TIGR02718       226 SGFGLSKLYLVD------AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWL  299 (390)
T ss_pred             HHHHHhhHHHHh------cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            666666666643      58999999999888776555544448889999999999888776655332222211111000


Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCc-chhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCc
Q 014682          314 FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQ-DQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGS  392 (420)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~  392 (420)
                      ............+.++......+.......+..++ +.+++.+++.+...++|..++|.+.|.++|..          |+
T Consensus       300 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~----------G~  369 (390)
T TIGR02718       300 APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF----------GY  369 (390)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------cc
Confidence            00111111222222233344455666666566665 89999999999999999999999999999998          88


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 014682          393 QMVFFVLNVVEAIGVLMT  410 (420)
Q Consensus       393 ~~~f~~~~~~~~~~~~~~  410 (420)
                      +..|.+.+++.+++.++.
T Consensus       370 ~~~f~~~~~~~l~a~~~~  387 (390)
T TIGR02718       370 AGGFLSGTVLAVLAILLA  387 (390)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            889998888777765543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.95  E-value=7.3e-25  Score=209.72  Aligned_cols=358  Identities=15%  Similarity=0.146  Sum_probs=238.8

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhh-Hhhhhhh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI   96 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~   96 (420)
                      ..+..+++.+|..+|++++|+++||+|||++++.++++..++.+..++++|++.+++.|+++|++.+....+ ..++.|+
T Consensus       120 ~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~  199 (521)
T KOG0255|consen  120 VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEI  199 (521)
T ss_pred             HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheee
Confidence            889999999999999999999999999999999999999999999999999999999999999998777776 9999999


Q ss_pred             chhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHHHHHHhcccccCC
Q 014682           97 FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR  176 (420)
Q Consensus        97 ~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~  176 (420)
                      +++|+|+.+..+ ......+..++++.++++..         +         ||...+...++....++.++..||+|++
T Consensus       200 ~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---------~---------Wr~~~~~~~~~~~~~~~~~~l~~Es~rw  260 (521)
T KOG0255|consen  200 VSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---------D---------WRWLFWIISIPSGLFLLLWFLPPESPRW  260 (521)
T ss_pred             cCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---------h---------HHHHHHHHHHHHHHHHHHHHccCcChHH
Confidence            999999999999 77778888888888888864         3         4555577777777766666677799998


Q ss_pred             CCCCCCcccch--hHhhhhh------h-----h--hhhh---hhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHH
Q 014682          177 HNDDDDSCDVS--YDALESA------S-----A--EVKE---EEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEI  238 (420)
Q Consensus       177 ~~~~~~~~~~~--~~~~~~~------~-----~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (420)
                      ...+.+.++..  .++..+.      .     .  ..++   ...+++....++++.|++....+...+..+.....   
T Consensus       261 l~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~---  337 (521)
T KOG0255|consen  261 LLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLV---  337 (521)
T ss_pred             HHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHH---
Confidence            65544432221  1111110      0     0  0000   01112244677888876544444333332211111   


Q ss_pred             HHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 014682          239 FSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAF  318 (420)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (420)
                         |........++|.+..   ......+........ ......++.|||.....+..+..++++...+.......  +.
T Consensus       338 ---y~gl~~~~~~lg~~~~---~~~~~~~~~~~p~~~-~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  408 (521)
T KOG0255|consen  338 ---YYGLSLNVSGLGGNIY---LNFTLSGLVELPAYF-RNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGG--WL  408 (521)
T ss_pred             ---HHhhhhhhhhcCchHH---HHHHHHHHHHhhHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchh--HH
Confidence               1111111122333322   223333345555544 45566677799999999999988888888776643321  11


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHH
Q 014682          319 LLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFV  398 (420)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~  398 (420)
                       ..+...+..++............+|.+|+..|..+.+..+....++++++|.+.-......           ....+.+
T Consensus       409 -~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~-----------~~~~~~~  476 (521)
T KOG0255|consen  409 -HWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMF-----------PLLGLIL  476 (521)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----------ccchHHH
Confidence             1122222223334445555889999999999999999999999999999999876554432           1222233


Q ss_pred             HHHHHHHHHHHHhhhhhhccC
Q 014682          399 LNVVEAIGVLMTFKPFLAQRH  419 (420)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~  419 (420)
                      ++....+...+... ..||.+
T Consensus       477 ~~~~~~l~~~~~~~-~lpet~  496 (521)
T KOG0255|consen  477 FGWLALLLGLLSLL-LLPETK  496 (521)
T ss_pred             HHHHHHHHHHHHHh-cCcccC
Confidence            45555555544434 466543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.95  E-value=8.9e-33  Score=260.19  Aligned_cols=376  Identities=19%  Similarity=0.248  Sum_probs=251.2

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHhhhhccchhhh-Hh
Q 014682           16 SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV---NFWMAVLTRFLLGSLNGLLGPI-KA   91 (420)
Q Consensus        16 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~-~~   91 (420)
                      ...+++.+...+|..+|+++.|.++||+|||+.+..+.++..++.++.++++   |++.++++|+++|++.|...+. ..
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~  125 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI  125 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3478999999999999999999999999999999999999999999999999   9999999999999999988887 99


Q ss_pred             hhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHHHHHHhcc
Q 014682           92 YACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  171 (420)
Q Consensus        92 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  171 (420)
                      ++.|..|+++|++..++.+....+|..++..++..+.+       ..+      .+.||..+....++.+...+...++|
T Consensus       126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~-------~~~------~~~Wr~~~~~~~~~~l~~~~~~~~~p  192 (451)
T PF00083_consen  126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSY-------YSD------NWGWRILLIFGAIPSLLVLLLRFFLP  192 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccc-------ccc------cccccccccccccccccccccccccc
Confidence            99999999999999999999999999998888765543       111      12344444677777776667778999


Q ss_pred             cccCCCCCCCCcccc--hhHhhhhhhh---hhhhhh------cCCCCchhhhccchhH-HHHHHHHHHHHhhhhhHHHHH
Q 014682          172 ETLHRHNDDDDSCDV--SYDALESASA---EVKEEE------GREATPKKSLLKNWPL-MSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       172 e~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      |||++...++++++.  ..++.++.+.   +.+++.      ++.+..+++++++++. +.......+............
T Consensus       193 ESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~  272 (451)
T PF00083_consen  193 ESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFI  272 (451)
T ss_pred             cccceecccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccc
Confidence            999986544433322  1122111111   101101      1111346677777542 222222222222211111122


Q ss_pred             HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH--HHHHhhhh--H
Q 014682          240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYP--YIAMLSGF--G  315 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~  315 (420)
                      ..|.  +...+..+.+..  -......++...++.+ .+..+.||+|||+.+..+.....++.....  ........  .
T Consensus       273 ~~~~--~~i~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (451)
T PF00083_consen  273 FYYS--PSIFENAGISNS--FLATLILGLVNFLGTL-LAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW  347 (451)
T ss_pred             cccc--cccccccccccc--cccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence            2222  222233455555  1111222344444444 556888899999998888877776655553  11111110  1


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHH
Q 014682          316 LAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMV  395 (420)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~  395 (420)
                      ....+.........+..+..+..+.+.+|.+|++.|+++.|+....+.+++.++|.+...+.+..          +....
T Consensus       348 ~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~----------~~~~~  417 (451)
T PF00083_consen  348 SILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL----------GGWGV  417 (451)
T ss_pred             ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------ccccc
Confidence            12122222222233445667788889999999999999999999999999999999988888776          43456


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccCC
Q 014682          396 FFVLNVVEAIGVLMTFKPFLAQRHD  420 (420)
Q Consensus       396 f~~~~~~~~~~~~~~~~~~~~~~~~  420 (420)
                      +.+.+.++++..++.+. +.||+++
T Consensus       418 ~~i~~~~~~i~~i~~~~-~lpET~g  441 (451)
T PF00083_consen  418 FLIFAGVCLIAIIFVYF-FLPETKG  441 (451)
T ss_pred             chhhHHHHHHHHhheeE-EEeeCCC
Confidence            67777777777777777 7888764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.95  E-value=2.1e-26  Score=195.10  Aligned_cols=367  Identities=15%  Similarity=0.105  Sum_probs=248.0

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL   82 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~   82 (420)
                      +.+|.+..|      ..++....+.+..+++..||..+|++|||+.+.+......+...+.+.++|+..+++.|.+.|+|
T Consensus       106 ~~w~~s~~q------~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g  179 (528)
T KOG0253|consen  106 EVWGPSEGQ------APLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFG  179 (528)
T ss_pred             hhhchhhhh------hhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhcc
Confidence            456777777      89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHH
Q 014682           83 NGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAF  161 (420)
Q Consensus        83 ~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~  161 (420)
                      .|. .|. .++-.|..|..+|..-+-.. ..+.+|.+....++-....       .+|||+.+         .....+..
T Consensus       180 ~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~-------~~gwr~~l---------~~~~~pl~  241 (528)
T KOG0253|consen  180 VGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS-------NFGWRYLL---------FTSSTPLM  241 (528)
T ss_pred             CCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH-------hhhHHHHH---------HHHHhHHH
Confidence            888 666 88889999999998776666 9999999999999988887       67777655         55556666


Q ss_pred             HHHHHHHhcccccCCCCCCCCcccchh--Hhhhhhh---------------hhhhh----------hhcCCCCchhhhcc
Q 014682          162 GVTIAAFWLPETLHRHNDDDDSCDVSY--DALESAS---------------AEVKE----------EEGREATPKKSLLK  214 (420)
Q Consensus       162 ~~~~~~~~l~e~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~----------~~~~~~~~~~~~~~  214 (420)
                      +.....+++||+|+..-.+.++.+...  +++.+.+               ++++|          ..++......+++.
T Consensus       242 ~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLls  321 (528)
T KOG0253|consen  242 FAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLS  321 (528)
T ss_pred             HHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcC
Confidence            677788999999998655544433321  1111110               00000          00112223344444


Q ss_pred             chhHHHHHHHHHHHHhhhhhHHHHH---HHhhcCcc----------cCC----ccCCchhhHHHHHHHHHHHHHHHHHHH
Q 014682          215 NWPLMSSIIVYCVFSLHDMAYSEIF---SLWANSPK----------KLG----GLNYSTQMVGEVLAITGFSLLVFQLSL  277 (420)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----------~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~  277 (420)
                      .+-.+..++....+......+....   ..+.+...          .+.    +-..+...--.-..+..+...++.+ +
T Consensus       322 p~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlL-I  400 (528)
T KOG0253|consen  322 PKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLL-I  400 (528)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchh-H
Confidence            3333333333333322222222111   11111110          000    0011111111223344677778866 8


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhH
Q 014682          278 YPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI  357 (420)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  357 (420)
                      ..++.||+|||+.+....++..+..+.......  .+......+.    .-++..+.+...+.+..|.+|+..|+++.|.
T Consensus       401 t~~iverlGRKkTMal~l~~f~iflfll~~c~~--rn~~tvllf~----arafisg~fqvaYvYtPEVyPTavRatgvGt  474 (528)
T KOG0253|consen  401 TGVIVERLGRKKTMALSLILFGIFLFLLTTCKT--RNAYTVLLFT----ARAFISGAFQVAYVYTPEVYPTAVRATGVGT  474 (528)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcC--cchhHHHHHH----HHHHHhchheEEEEecCcccchhhhhcchhh
Confidence            888888899999999998888777666554432  2222222222    2245566778889999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          358 AMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       358 ~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      ++.+..+|+++.|.++ ...+.           ....+..+.+.+++++.+..++
T Consensus       475 cSsmaRIggI~~p~iA-~~~e~-----------s~sl~i~vy~~~~ilagIavcf  517 (528)
T KOG0253|consen  475 CSSMARIGGIFSPVIA-MRAEL-----------STSLPIFVYGALFILAGIAVCF  517 (528)
T ss_pred             hhhHHhhhhhhhhHHH-HHhcc-----------ceeehHHHHHHHHHHHHHHhee
Confidence            9999999999999988 33332           3445566677777777766655

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.95  E-value=4.5e-27  Score=226.58  Aligned_cols=289  Identities=17%  Similarity=0.183  Sum_probs=212.7

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhh-------------
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV-------------   67 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~-------------   67 (420)
                      ++++|+++..+      .|++.+.+.+++.++.++.++++||+|||+.+.++.++++++++++++.+             
T Consensus        59 iek~F~lss~~------~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~  132 (633)
T TIGR00805        59 IERRFKLSTSS------SGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS  132 (633)
T ss_pred             hhhhhCCCCCc------ceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence            46889999999      99999999999999999999999999999999999999999999998763             


Q ss_pred             --------------------------------------hHHHHHHHHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHH
Q 014682           68 --------------------------------------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLST  108 (420)
Q Consensus        68 --------------------------------------~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~  108 (420)
                                                            .+..++++|+++|+|.+...+. .+++.|++|+++|++++++
T Consensus       133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i  212 (633)
T TIGR00805       133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI  212 (633)
T ss_pred             ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence                                                  2556789999999999999887 9999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHhHhccccccCCcc---------ccccccccCccchHHHHHHHHHHHHHHHHHHhcccccCCCCC
Q 014682          109 VSTAWGIGLIIGPALGGFLAQPAEKYPNL---------FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND  179 (420)
Q Consensus       109 ~~~~~~~g~~~g~~l~~~l~~~~~~~~~~---------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~  179 (420)
                      ...+..+|.++|+++++++.+...+|+..         .+||  | ...||..+++.+++.++..+.++++|++.++..+
T Consensus       213 ~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dpr--W-iGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~  289 (633)
T TIGR00805       213 LESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPR--W-IGAWWIGFLICGGVALLTSIPFFFFPKALPKEGK  289 (633)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCcc--H-HHHHHHHHHHHHHHHHHHHHHHHhCccccCCccc
Confidence            99999999999999999998732222110         0111  1 2247888888887777765556677766443211


Q ss_pred             CCCcccchhHhhhhhhhhh-h---hhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCc
Q 014682          180 DDDSCDVSYDALESASAEV-K---EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS  255 (420)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (420)
                      +.+.+....+..++..++. .   +..++.....++++|||.++...+..++.......+..+.|.|+...     +|++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~-----~g~s  364 (633)
T TIGR00805       290 RVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQ-----YGIS  364 (633)
T ss_pred             ccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCc
Confidence            1100000000000000000 0   00011123466799999999999998888888888889999999776     8999


Q ss_pred             hhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHH
Q 014682          256 TQMVGEVLAITGFS-LLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTS  304 (420)
Q Consensus       256 ~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  304 (420)
                      +.+++.+.....+. .+++.+ +++++.||++  .++.+..+..+..+..+.
T Consensus       365 ~~~ag~l~~~~~i~~~~vG~~-l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       365 SAEANFLIGVVNLPAAGLGYL-IGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHhhhhhhhHHHHHHh-hhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            99999998877764 445544 7888888876  466666666666555433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.95  E-value=8.9e-25  Score=188.92  Aligned_cols=353  Identities=18%  Similarity=0.218  Sum_probs=264.5

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHH
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---LSVNFWMAVLTRFL   78 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l   78 (420)
                      ++.|+++..|      .+++..+++.++.+.+++.|++.+|+|+|+.++.++.++++++.++.   -..++..++++-++
T Consensus        40 ~~~f~ls~~~------a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFi  113 (422)
T COG0738          40 KEVFDLTYFE------ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFI  113 (422)
T ss_pred             HHHhCccHHH------HHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence            5678999999      99999999999999999999999999999999999999999999985   45788999999999


Q ss_pred             hhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhcccccc----CCccccccccccCccchHHH
Q 014682           79 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK----YPNLFSSESLFGKFPYFLPC  153 (420)
Q Consensus        79 ~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~----~~~~~gw~~~~~~~~~~~~~  153 (420)
                      .|.|.+...+. ..+++...|+++-.+.+.+.+..+++|.+++|++++.+..+...    -+....|+... -..++.++
T Consensus       114 la~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~-~~~v~~pY  192 (422)
T COG0738         114 LASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGAD-ASSVQFPY  192 (422)
T ss_pred             HHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHH-HHhhhhHH
Confidence            99999998887 99999999999999999999999999999999999999873100    00011122111 12245555


Q ss_pred             HHHHHHHHHHHHHHHh--cccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhh
Q 014682          154 LCISLFAFGVTIAAFW--LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLH  231 (420)
Q Consensus       154 ~~~~~~~~~~~~~~~~--l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (420)
                      ...+...++..+....  .||.++..+++.                     +.......+++|+|.++...+..+++...
T Consensus       193 l~~~~~lvll~v~~~~~k~p~~~~~~~~~~---------------------~~~~~~~~~l~~~~~~~~gvl~~FlYVG~  251 (422)
T COG0738         193 LILAGLLVLLAVLILLSKLPDLQVAAPSLG---------------------ASGSAGLSSLFQNKHLRLGVLAIFLYVGA  251 (422)
T ss_pred             HHHHHHHHHHHHHHHhccCCcCCccccccc---------------------ccccchHHHHHhChHHHHHHHHHHHHHhH
Confidence            5555444443333222  232222111111                     01111567899999999999999999999


Q ss_pred             hhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHh
Q 014682          232 DMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAML  311 (420)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (420)
                      .....++++.|+.++     .|.+..+.+...+....+.++++. ++.++.+|++..+.+....+...+.++...+..+ 
T Consensus       252 Eva~gsfl~~y~~~~-----~g~~~~~aa~~~s~~~~~~~vGRF-ig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g-  324 (422)
T COG0738         252 EVAIGSFLVSYLEEL-----LGLNEQQAAYYLSFFWVGFMVGRF-IGSALMSRIKPEKYLAFYALIAILLLLAVALIGG-  324 (422)
T ss_pred             HHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            999999999999876     689999999999999999999987 5566666888888888777666665555555432 


Q ss_pred             hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCC
Q 014682          312 SGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPG  391 (420)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g  391 (420)
                            .+.+....+.+.+...++|...++..+..| ++...+.+ .-.+..+|+++-|.+.|++.|..          |
T Consensus       325 ------~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~-~l~maivGGAiiP~l~G~i~d~~----------g  386 (422)
T COG0738         325 ------VVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSG-LLVMAIVGGAIIPPLQGVIADMF----------G  386 (422)
T ss_pred             ------hHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccce-eeeeheecchHHHHHHHHHHHhh----------h
Confidence                  122233444556788999999999999898 44444444 34577899999999999999998          5


Q ss_pred             chHHHHHHHHHHHHHH
Q 014682          392 SQMVFFVLNVVEAIGV  407 (420)
Q Consensus       392 ~~~~f~~~~~~~~~~~  407 (420)
                      ....+.....+|.+..
T Consensus       387 ~~~~~~~~pllc~lyV  402 (422)
T COG0738         387 IQLTFLIVPLLCYLYV  402 (422)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            5556554555554444

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.95  E-value=3.6e-25  Score=206.12  Aligned_cols=366  Identities=16%  Similarity=0.161  Sum_probs=267.2

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLT-RFLLG   80 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-r~l~G   80 (420)
                      +++++.+.++      ++|+.++......+..|+.+.+.||||.|.+.+.+.++..++.++.++++++|++++. -++.|
T Consensus        73 ~~~f~~s~~~------~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G  146 (509)
T KOG2504|consen   73 MDYFGSSSSQ------IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGG  146 (509)
T ss_pred             HHHhCCCccH------HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence            5788889999      9999999999999999999999999999999999999999999999999999988877 67889


Q ss_pred             hhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHH
Q 014682           81 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF  159 (420)
Q Consensus        81 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  159 (420)
                      +|.|..... ...+..++ +|+|+.+.|+...+.++|.++-|.+...+.+       .+|||...         +..+.+
T Consensus       147 ~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~-------~~G~r~~~---------l~~~~~  209 (509)
T KOG2504|consen  147 LGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLS-------KYGWRGAL---------LIFGGI  209 (509)
T ss_pred             ccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHH-------HhCcHHHH---------HHHHHH
Confidence            998886654 77777665 5679999999999999999999999999998       66666544         444444


Q ss_pred             HHHHHHH-HHhcccccCCCCC---------------------CC-CcccchhH--hhhhhh-hhhhhhh---cCCCCc--
Q 014682          160 AFGVTIA-AFWLPETLHRHND---------------------DD-DSCDVSYD--ALESAS-AEVKEEE---GREATP--  208 (420)
Q Consensus       160 ~~~~~~~-~~~l~e~~~~~~~---------------------~~-~~~~~~~~--~~~~~~-~~~~~~~---~~~~~~--  208 (420)
                      .+-.... ...-|.+++..+.                     +. ++.....+  ...... ++.+++.   ......  
T Consensus       210 ~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (509)
T KOG2504|consen  210 SLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSM  289 (509)
T ss_pred             HHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhh
Confidence            4443333 3333422221111                     00 00000000  000000 0000000   111111  


Q ss_pred             -hhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Q 014682          209 -KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG-  286 (420)
Q Consensus       209 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-  286 (420)
                       ..+++|+|.++...+...+..........+++.|..+      .+++..+++.+.++.++..+++++ +.+++.|+.. 
T Consensus       290 ~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~------~g~~~~~aa~l~Siigi~~i~gRi-~~G~laD~~~~  362 (509)
T KOG2504|consen  290 LDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS------LGLSSNDAAFLLSIIGVSDIIGRI-ILGLLADKPGI  362 (509)
T ss_pred             hhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCCChhhhHHHHHHHHHhhhhhhh-hhhhhcCcccc
Confidence             3688999999988888888777777777777777653      799999999999999999999998 7788888755 


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHH
Q 014682          287 -PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF  365 (420)
Q Consensus       287 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  365 (420)
                       ++....++.+...+.....+....      ...+...+.+.++..+........++.+..+.++-..+.|+...++.++
T Consensus       363 ~~~~~~~~~ll~~gl~~~~~p~~~~------~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~  436 (509)
T KOG2504|consen  363 RALVLFLLTLLIAGLARLFLPFATT------YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIG  436 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHH
Confidence             334444444444444434433322      2344555666666667777777788999999999999999999999999


Q ss_pred             HHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          366 KAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       366 ~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      ..+||++.|.++|..+         +|...|+.++...+++..+.+.
T Consensus       437 ~l~gpPiag~~~d~tg---------~Y~~~f~~~g~~~~~s~~~~~~  474 (509)
T KOG2504|consen  437 ALVGPPIAGLLYDITG---------NYDHAFYFCGLCFLLSAVLLLI  474 (509)
T ss_pred             HHcCcccceeeeeccC---------CeeeehhhcChHHHHHHHHHHH
Confidence            9999999999999984         5888999999888888765544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.94  E-value=7.2e-24  Score=180.55  Aligned_cols=343  Identities=16%  Similarity=0.096  Sum_probs=270.5

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG   80 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G   80 (420)
                      |++|+|+|.++      .|+++++..+...+.+++..+++.|+|.++.+..++++..++.++-... +.+.++.+-.+.|
T Consensus        38 Ir~~~gls~s~------aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G  110 (395)
T COG2807          38 IRQDLGLSFSV------AGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAG  110 (395)
T ss_pred             HHHHhcccHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHH
Confidence            46889999999      9999999999999999999999999999999999999999999998887 7888889999999


Q ss_pred             hhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHH
Q 014682           81 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF  159 (420)
Q Consensus        81 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  159 (420)
                      .+.+..... ++.+.+.+|+ +-+..++++....++|..+++.+.-.+.++      ..|||..         ...-+++
T Consensus       111 ~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~------~~gW~~a---------L~~WAl~  174 (395)
T COG2807         111 AGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQH------SGGWRGA---------LGFWALL  174 (395)
T ss_pred             hhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHh------hccHHHH---------HHHHHHH
Confidence            999998887 9999999985 579999999999999999999999999882      1245533         3455556


Q ss_pred             HHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014682          160 AFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       160 ~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      +++.++.+  +|...+++..+                     .+.+..+...++|||.-|...+.+.+.++.......++
T Consensus       175 allAl~~W--lPq~~r~~~~~---------------------~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WL  231 (395)
T COG2807         175 ALLALLIW--LPQALREQAAS---------------------IATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWL  231 (395)
T ss_pred             HHHHHHHH--hhhcccccccc---------------------cccccccccccccCchhHHHHHHHHhhHHHHHHHHHHH
Confidence            66555544  45432221110                     11112334568999999999999999999999999999


Q ss_pred             HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 014682          240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAF  318 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (420)
                      |.++.+      .|+|+.++|.+.+...+..++.++ ..+.+.+| .++|+.......++.++...+.+.+..   ..+.
T Consensus       232 P~ili~------~G~sa~~aG~llsl~~l~~~~~~l-l~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~---~~~l  301 (395)
T COG2807         232 PAILID------RGLSAAEAGSLLSLMQLAQLPTAL-LIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQ---LPIL  301 (395)
T ss_pred             HHHHHH------cCCCHHHhhhHHHHHHHHHHHHHH-HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhh---HHHH
Confidence            998876      599999999999999999999998 67777665 456666667777777777666554421   1122


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhhc-CCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHH
Q 014682          319 LLNCASVVKNLLSVSIITGLFILQNRA-VDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFF  397 (420)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~  397 (420)
                      .    .++.+.+..+.+|....+.... .++++.++-.|+.+.++++-.+.||.+.|.+.|..+         +|+.++.
T Consensus       302 w----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g---------sw~~~~~  368 (395)
T COG2807         302 W----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG---------SWSAPLV  368 (395)
T ss_pred             H----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC---------ChHHHHH
Confidence            2    2344456567777777666654 457888999999999999999999999999999995         8998888


Q ss_pred             HHHHHHHHHHHHHhh
Q 014682          398 VLNVVEAIGVLMTFK  412 (420)
Q Consensus       398 ~~~~~~~~~~~~~~~  412 (420)
                      ......++..+.-+.
T Consensus       369 ~l~~~~i~m~i~Gl~  383 (395)
T COG2807         369 LLALATLLMLIFGLR  383 (395)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            888877777666554

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.94  E-value=1e-23  Score=191.87  Aligned_cols=367  Identities=17%  Similarity=0.204  Sum_probs=260.1

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcC-CchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-RKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-rk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      ++.|.|.+|      +|.+.+...+...++++++|.++||.+ +||.+.+..++.++........++++.+++.-++..+
T Consensus        30 ~~~G~s~~q------IG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~  103 (400)
T PF03825_consen   30 ESRGFSGTQ------IGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSF  103 (400)
T ss_pred             HhCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            456889999      999999999999999999999999986 6888888888888877777788899988888888888


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHH-hHhccccccCCccccccccccCccchHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG-GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF  159 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~-~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  159 (420)
                      ......|. .++..+...  ++++-.|-.....++|.+++.... +.+..       ..+++.      ....+.+.+..
T Consensus       104 ~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~-------~~~~~~------~~~~~~i~~~~  168 (400)
T PF03825_consen  104 FFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGG-------YLGISG------TSLIFYIAAIL  168 (400)
T ss_pred             HHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHh-------hhcccc------ccHHHHHHHHH
Confidence            77777776 666666654  456667888888888988886542 33332       111111      11122333333


Q ss_pred             HHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014682          160 AFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       160 ~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      .++.....+.+|+.|++++.+++.+                  +....+..+++|||++....+..++.......+.++.
T Consensus       169 ~~ll~~~~l~lp~~~~~~~~~~~~~------------------~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~  230 (400)
T PF03825_consen  169 SLLLAGFALFLPKTPPKRSAKESVK------------------KLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFF  230 (400)
T ss_pred             HHHHHHHHHhCCCCccccccCCCcc------------------cccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444566787763332221111                  1112234579999999988888888888888888888


Q ss_pred             HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014682          240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFL  319 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (420)
                      +.|+.+.     -|.+....+...+...+.+++.-. ..+++-+|+|.++++.++....++=..++.....+. ......
T Consensus       231 ~~yl~~~-----gg~~~~~~g~~~~l~~~aEi~~f~-~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~-~~~~~~  303 (400)
T PF03825_consen  231 SIYLQEL-----GGYSGSTIGILWALGVVAEIPFFF-FSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPW-PFIVAL  303 (400)
T ss_pred             HHHHHHc-----ccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCc-HHHHHH
Confidence            8888764     237778888888887777777744 778888889999999999998888877776652211 111112


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHH-HHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHH
Q 014682          320 LNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG-MSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFV  398 (420)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~  398 (420)
                      ......+-+............++.+..|++.|++++++.+.. ..+|..+|..++|+++|+.+.+..    ..+...+.+
T Consensus       304 ~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~----~~~~~~~~v  379 (400)
T PF03825_consen  304 QLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGM----FDWSAVFLV  379 (400)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhh----hhHHHHHHH
Confidence            222234456666778888889999999999999999998876 489999999999999999743211    135566777


Q ss_pred             HHHHHHHHHHHHhhhhhhccCC
Q 014682          399 LNVVEAIGVLMTFKPFLAQRHD  420 (420)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~  420 (420)
                      .+++.++..++.+. ..||+++
T Consensus       380 ~a~~~~~~~~~f~~-~fk~~~~  400 (400)
T PF03825_consen  380 FAVMALVILVLFVI-LFKPKHN  400 (400)
T ss_pred             HHHHHHHHHHHHHh-hccCCCC
Confidence            77777777666666 4555543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.94  E-value=6.1e-27  Score=204.35  Aligned_cols=383  Identities=16%  Similarity=0.138  Sum_probs=247.3

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHhhhhccchhhh-
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV-------NFWMAVLTRFLLGSLNGLLGPI-   89 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~-   89 (420)
                      .+.+..+..+|.++|+++.|+++||+|||+++...++++.+++++++++.       -..++...|++.|+|.|.-+|+ 
T Consensus        86 ~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlS  165 (538)
T KOG0252|consen   86 LALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLS  165 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcch
Confidence            78899999999999999999999999999999999999999999888752       2578889999999999999998 


Q ss_pred             HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCcccccc---ccccCccchHHHHHHHHHHHHHHHH
Q 014682           90 KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE---SLFGKFPYFLPCLCISLFAFGVTIA  166 (420)
Q Consensus        90 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~---~~~~~~~~~~~~~~~~~~~~~~~~~  166 (420)
                      .+..+|...+++||...+.+.+..+.|...|.+++-.+..-...   .++-+   ... +.-||+.+.+..++++..+..
T Consensus       166 AtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~---~~~~~~~~~~l-d~vWRl~~glg~vpa~~~ly~  241 (538)
T KOG0252|consen  166 ATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEK---IFNGPSTYPHL-DGVWRIIFGLGAVPALLVLYF  241 (538)
T ss_pred             HHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhc---cCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHh
Confidence            78889999999999999998888888888887777665532111   12211   111 345888889999999988888


Q ss_pred             HHhcccccCCCCCCCCcccchhHhhhhhhh------hhhhhhcCCCC----chhhhccch---hHHHHHHHHHHHHhhhh
Q 014682          167 AFWLPETLHRHNDDDDSCDVSYDALESASA------EVKEEEGREAT----PKKSLLKNW---PLMSSIIVYCVFSLHDM  233 (420)
Q Consensus       167 ~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~  233 (420)
                      ++.+||+++.+...+++.+...++.++...      +..+...+.++    .+...+..+   .+......+++......
T Consensus       242 Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy  321 (538)
T KOG0252|consen  242 RLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFY  321 (538)
T ss_pred             hhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            999999998762222111111011110000      00001111111    122222222   22333444444443333


Q ss_pred             hHHHHHHHhhcCcccCCccCCchhhHH--------HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 014682          234 AYSEIFSLWANSPKKLGGLNYSTQMVG--------EVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSY  305 (420)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (420)
                      .........+      +..++.+....        ....+....+.+-...+...+.|++||++....++.++.+..+..
T Consensus       322 ~~nL~~s~I~------~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~  395 (538)
T KOG0252|consen  322 GQNLFQSVIF------SAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVI  395 (538)
T ss_pred             ccccHHHHHH------HhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHH
Confidence            3322222222      11233332222        222222222222112244567788899999999999888877766


Q ss_pred             HHHHH-hhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhcc
Q 014682          306 PYIAM-LSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRL  384 (420)
Q Consensus       306 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~  384 (420)
                      ....+ ........+  ...+...+...+-+.....+.+|.+|.+.|++..|+....+..|++++.....++.+..    
T Consensus       396 ~~~y~~~~~~~Gf~v--~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~----  469 (538)
T KOG0252|consen  396 AGPYNQLENTIGFVV--LYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN----  469 (538)
T ss_pred             cCCcccccccCceee--hHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc----
Confidence            55433 121122222  22222233444555566678899999999999999999999999999999998888743    


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhccC
Q 014682          385 DASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH  419 (420)
Q Consensus       385 ~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  419 (420)
                       .++..+.+.++++++.+++++.++.++  .||++
T Consensus       470 -yp~~~g~~~v~~i~~~~~~~gi~~T~l--~pEtk  501 (538)
T KOG0252|consen  470 -YPPNIGVRNVFIILAGCMLLGILFTLL--IPETK  501 (538)
T ss_pred             -CCccccchHHHHHHHHHHHHhHheeEE--eeccc
Confidence             111228899999999999999888776  45543

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.93  E-value=1.6e-23  Score=187.59  Aligned_cols=377  Identities=14%  Similarity=0.071  Sum_probs=229.3

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      .+|+|+|++|.     .|.+.++++.+++++.++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|+
T Consensus        53 ~~elglT~~qv-----~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGv  127 (511)
T TIGR00806        53 LTVLNFTEETV-----TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSV  127 (511)
T ss_pred             HHHcCCCHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46889887762     6999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhhHhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHH
Q 014682           82 LNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAF  161 (420)
Q Consensus        82 ~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~  161 (420)
                      ++|...+...++.+|+|+++|+++.++...+..+|.++++++++++.        .+|||+..      ..+.+......
T Consensus       128 aEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~--------s~gWr~y~------~Ln~Isl~s~~  193 (511)
T TIGR00806       128 TMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV--------TLGWISYS------TLNIISLVFMT  193 (511)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcCchhHH------HHHHHHHHHHH
Confidence            99998844999999999999999999999999999999999999944        46776533      44555555555


Q ss_pred             HHHHHHHhcccccCCCC--CCCCcccchhHhhhhhhhhhh--hh---hc-------CCCCchhhhccchhHHHHHHHHHH
Q 014682          162 GVTIAAFWLPETLHRHN--DDDDSCDVSYDALESASAEVK--EE---EG-------REATPKKSLLKNWPLMSSIIVYCV  227 (420)
Q Consensus       162 ~~~~~~~~l~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~  227 (420)
                      +.++..+++|..++..-  ++++..+....+.++..++..  +.   +.       .-....++..+|+.++.-.+-+.+
T Consensus       194 ~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~  273 (511)
T TIGR00806       194 FSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVF  273 (511)
T ss_pred             HHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHH
Confidence            56677788885544211  110000000000000000000  00   00       001123444667766554444444


Q ss_pred             HHhhhhhHHHHHH-HhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 014682          228 FSLHDMAYSEIFS-LWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYP  306 (420)
Q Consensus       228 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (420)
                      ....+....++.. +|-......+      ...|..-++..+.+.+..+ ..+++..+..+...+.++.....-+.+++ 
T Consensus       274 a~~g~~qv~~Y~Q~LW~~v~~~~~------~yNG~veA~~tllga~~a~-~ag~~~~~w~~~~~l~l~v~s~~~~gll~-  345 (511)
T TIGR00806       274 NSAGYYLITYYVHTLWGTLDESLN------KYNGAVDAASTLLGAITSF-IAGFVNIRWARWSKLLIAVVSAIQAGLVF-  345 (511)
T ss_pred             HhhHHHHHHHHHHHHHHHcCCCcc------ccCCHHHHHHHHHHHHHHH-HHHhhcCCchhhHHHHHHHHHHHHHHHhh-
Confidence            4333333322222 2221111011      1335555555555666655 45555444333223333333222222222 


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhh--cc
Q 014682          307 YIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQK--RL  384 (420)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~--~~  384 (420)
                      ++...   ...++..+..+++........++...-+++....+.-|..+|+++.+.-+-+.+-..+.   .|..+-  ..
T Consensus       346 ~m~~t---~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV---vd~~gl~l~i  419 (511)
T TIGR00806       346 WMSQS---HDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAVV---SDKRGLGLQV  419 (511)
T ss_pred             hhhcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEE---EcccccCCCc
Confidence            11111   12334455555555666677777788788878888889999999988877666555443   222110  00


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          385 DASFLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       385 ~~~~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      ...+ .-|..-|.+.+.+.++..++...
T Consensus       420 ~~Qf-~vY~~yf~~~~~i~~~~~~~~~~  446 (511)
T TIGR00806       420 RKQF-RIYSVYFLVLSIICFFGAGLDGL  446 (511)
T ss_pred             eeEE-EehhhHHHHHHHHHHHHHHHHHh
Confidence            0011 02334566666666666554443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.92  E-value=1.3e-22  Score=180.87  Aligned_cols=352  Identities=15%  Similarity=0.148  Sum_probs=230.4

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHH--HHH-HHHhhhh----hHH-HHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV--IFN-TLFGLSV----NFW-MAVL   74 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~--~~~-~~~~~~~----~~~-~l~~   74 (420)
                      ++.|+|.+|      +|.+.++..+...+.+|+.|.++||.|.||-++.......  .+. +...+.|    |++ ..++
T Consensus        36 ~~~GLs~~~------iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~ii  109 (412)
T PF01306_consen   36 QVAGLSGTE------IGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAII  109 (412)
T ss_dssp             HHH---HHH------HHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHH
T ss_pred             cccCCCHHH------HHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347899999      9999999999999999999999999996665543332221  122 2222222    222 1222


Q ss_pred             HHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHH
Q 014682           75 TRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPC  153 (420)
Q Consensus        75 ~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~  153 (420)
                      +-+..|+......|. .+++.++.  ++.+.-.|-..+..++|.+++..++|.+.+.        +         ....+
T Consensus       110 g~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i--------~---------p~~~f  170 (412)
T PF01306_consen  110 GGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI--------N---------PNIIF  170 (412)
T ss_dssp             TTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--------H---------HHHHH
T ss_pred             HHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee--------C---------ccHHH
Confidence            222333333334444 55554443  3445667888999999999999999999861        1         11223


Q ss_pred             HHHHHHHHHHHHHHHhc-ccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhh
Q 014682          154 LCISLFAFGVTIAAFWL-PETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHD  232 (420)
Q Consensus       154 ~~~~~~~~~~~~~~~~l-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      ++....+++..++.+.. |+.+++.+.++.+..+.              ++.+.+...+++|+|++|...+.........
T Consensus       171 wi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y  236 (412)
T PF01306_consen  171 WIASAAAIILLLLLLLLKPDVPPQAEVADALGAKK--------------DKVSLKDVLSLFKMRNFWFFVLFVIGVAAIY  236 (412)
T ss_dssp             HHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS--------------------HHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCC--------------CCCcHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence            34444444433333333 33332221111110000              1111223568899999999888777766666


Q ss_pred             hhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014682          233 MAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS  312 (420)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (420)
                      ..+.+.++.|.......  .+.+....|.+.+..-+.+++.- ...+++.+|+|.|+.+.++..++.+-.....+.++..
T Consensus       237 ~vfdqqf~~y~~~~f~~--~~~g~~~~G~l~s~~v~~E~~~m-~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~  313 (412)
T PF01306_consen  237 DVFDQQFPIYFASFFQS--AGQGNQMYGYLWSVQVFLEALMM-FFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPW  313 (412)
T ss_dssp             HHHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHH
T ss_pred             HHHHHHHHHHHHHHhcc--cccChhHHhHHHHHHHHHHHHHH-HHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchH
Confidence            77777777777654222  45667788999998777777774 4899999999999999999998888877776654322


Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHH-HHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCC
Q 014682          313 GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIA-MTGMSLFKAAGPAGGGALFSWAQKRLDASFLPG  391 (420)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g  391 (420)
                            .+...-.+-+.-.........-++++.+|++..++...+. +...+++..+.+.+.|.++|+.          |
T Consensus       314 ------~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~----------G  377 (412)
T PF01306_consen  314 ------VISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI----------G  377 (412)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH----------H
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc----------C
Confidence                  3445555555666677777888889999999999999986 5667999999999999999999          8


Q ss_pred             chHHHHHHHHHHHHHHHHHhh
Q 014682          392 SQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       392 ~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      ++.+|++.+.+.++..++..+
T Consensus       378 ~~~tylimg~iv~~~~li~~f  398 (412)
T PF01306_consen  378 FQHTYLIMGLIVLPFTLISAF  398 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhee
Confidence            999999999988888777776

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.92  E-value=3.6e-22  Score=188.68  Aligned_cols=377  Identities=13%  Similarity=0.045  Sum_probs=215.6

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchhHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVIFNTLFGLSV-NFWMAVLTRFLL   79 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~   79 (420)
                      ++++|.++++      .+++.+.+........+++|+++|| +|||+++..+.++..++..++++++ +.+.+.++|+++
T Consensus        49 ~~~lg~s~~~------a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~  122 (500)
T PRK09584         49 VKQLGMSEAD------SITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATI  122 (500)
T ss_pred             HHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            4678998888      8888888776666667899999999 5999999999999999999998874 566777889999


Q ss_pred             hhhccchhhh-Hhhhhhhchhhh--hhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHH
Q 014682           80 GSLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI  156 (420)
Q Consensus        80 G~~~g~~~~~-~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  156 (420)
                      |++.|...+. .+++.|++|+++  |.+++++.+.+.++|..+||.+++++.+       .+|||+.|         .+.
T Consensus       123 gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~-------~~g~~~~F---------~i~  186 (500)
T PRK09584        123 AVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAA-------KYGWSVAF---------ALS  186 (500)
T ss_pred             HHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHH-------hhCHHHHH---------HHH
Confidence            9999988887 899999998643  5568899999999999999999999998       56666555         444


Q ss_pred             HHHHHHH----HHHHHhcccccCCCCCC-CCcccchhH-----------h-hhhhhhhhh------------hhhcCCCC
Q 014682          157 SLFAFGV----TIAAFWLPETLHRHNDD-DDSCDVSYD-----------A-LESASAEVK------------EEEGREAT  207 (420)
Q Consensus       157 ~~~~~~~----~~~~~~l~e~~~~~~~~-~~~~~~~~~-----------~-~~~~~~~~~------------~~~~~~~~  207 (420)
                      ++..++.    +.....++|..+..+++ .+..+....           . .....+...            ...... .
T Consensus       187 ~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  265 (500)
T PRK09584        187 VVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEA-F  265 (500)
T ss_pred             HHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-h
Confidence            4322222    12233344432111111 111110000           0 000000000            000000 0


Q ss_pred             chhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcC----cccCCccCCchhhHHHHHHHHHHHHHHHHHHHH---HH
Q 014682          208 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANS----PKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLY---PF  280 (420)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~  280 (420)
                      ...+.-|+| .+...... +............+.++..    .......|+. ...+.+.+.+.+..++...+..   ++
T Consensus       266 ~~~~~~~~~-~~~~~~~~-~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-i~~~~~~s~n~i~iil~~p~~~~~~~~  342 (500)
T PRK09584        266 AMKGAARRK-MIVAFILM-LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-VEPEQYQALNPFWIMIGSPILAAIYNK  342 (500)
T ss_pred             hcCHHHHHH-HHHHHHHH-HHHHHHHHHHHHhccHHHHHHHHhccccccceE-ECHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            001111222 22222211 1111112222222222211    1000111211 1234455555655555544332   33


Q ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhH
Q 014682          281 LERILGPIMVARIAGVLTIPLLTSYPYIAMLS---GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI  357 (420)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  357 (420)
                      +.||.+..+.+.++..+.+++.+.........   +...........++.+.+.....|....++.+..|++.||+++|+
T Consensus       343 l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~  422 (500)
T PRK09584        343 MGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGS  422 (500)
T ss_pred             hCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHH
Confidence            44444556777778888888777765543321   111122455666677788999999999999999999999999996


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHhhhhcc---CC-CCCCCchHHHHHHHHHHHHHHH
Q 014682          358 AMTGMSLFKAAGPAGGGALFSWAQKRL---DA-SFLPGSQMVFFVLNVVEAIGVL  408 (420)
Q Consensus       358 ~~~~~~~g~~~g~~~~g~l~~~~~~~~---~~-~~~~g~~~~f~~~~~~~~~~~~  408 (420)
                      ......+|..    +.|.+.+......   ++ ....++...|...+.++++..+
T Consensus       423 ~~l~~a~g~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~  473 (500)
T PRK09584        423 WFLTTAGAAL----IAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAV  473 (500)
T ss_pred             HHHHHHHHHH----HHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            6555554444    4444444322100   00 0011366778777766654443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.92  E-value=1.1e-21  Score=180.77  Aligned_cols=385  Identities=16%  Similarity=0.134  Sum_probs=243.5

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhh----hcCCchhHHHH-HHHHHHHHHHHhhhhhHHH------
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPVIIMG-TASVVIFNTLFGLSVNFWM------   71 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grk~~l~~~-~~~~~~~~~~~~~~~~~~~------   71 (420)
                      +++|.++.+      .+++..+..+...+.+|+.|+++|    |+||||.++.. .....++..+.+++++...      
T Consensus        32 ~~lg~~~~~------~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~  105 (477)
T TIGR01301        32 QELGIPHAW------ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNL  105 (477)
T ss_pred             HHcCCCHHH------HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccc
Confidence            467888888      999999999999999999999999    59999998774 6666777777777766432      


Q ss_pred             -----------HHHHHHHhhhhccchhh-hHhhhhhhchhhhh--hhHHHHHHHHhHHHHHHHHHHHhHhccccccCCcc
Q 014682           72 -----------AVLTRFLLGSLNGLLGP-IKAYACEIFREEHQ--ALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  137 (420)
Q Consensus        72 -----------l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~  137 (420)
                                 ++++-.+..++.....+ ..++++|.+|+++|  +++.++.+...++|.++|+.+++......     .
T Consensus       106 ~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~-----~  180 (477)
T TIGR01301       106 DKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYK-----I  180 (477)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----h
Confidence                       22222233335554444 49999999998865  57999999999999999999998752100     1


Q ss_pred             ccccc--ccc--CccchHHHHHHHHHHHHH-HHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhh
Q 014682          138 FSSES--LFG--KFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  212 (420)
Q Consensus       138 ~gw~~--~~~--~~~~~~~~~~~~~~~~~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (420)
                      +++..  ..+  -.+++..|.+.++..++. ++..+..||.+...+++.++++.     +      ++++.+.....+++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~~i  249 (477)
T TIGR01301       181 FPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEA-----A------PPSKHGEEAFFGEL  249 (477)
T ss_pred             cccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhc-----c------cccccchhhhHHHH
Confidence            11100  000  124566677776665554 45567788876432211100000     0      00000011122233


Q ss_pred             cc-----chhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCc----cCCchh--hHHHHHHHHHHHHHHHHHHHHHHH
Q 014682          213 LK-----NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG----LNYSTQ--MVGEVLAITGFSLLVFQLSLYPFL  281 (420)
Q Consensus       213 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~  281 (420)
                      ++     .|.++...+..++..+..+.+..+.+.|..+.....+    ..++..  .-........+...+.++ +.+.+
T Consensus       250 ~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~-~l~~l  328 (477)
T TIGR01301       250 FGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSI-GMEKL  328 (477)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            32     3556777777776665555554444444332211100    011111  012233344445555555 56778


Q ss_pred             HHhhch-HHHHHHHHHHHHHHHHHHHHHHHhhh---------------hHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Q 014682          282 ERILGP-IMVARIAGVLTIPLLTSYPYIAMLSG---------------FGLAFLLNCASVVKNLLSVSIITGLFILQNRA  345 (420)
Q Consensus       282 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (420)
                      .|++|+ |+....+.++..+++....+......               ........+.....|+.....+...++++++.
T Consensus       329 ~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~  408 (477)
T TIGR01301       329 CRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIR  408 (477)
T ss_pred             HHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Confidence            888884 67778887787777777765543111               01123344555566677888899999999998


Q ss_pred             CCc--chhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhccC
Q 014682          346 VDQ--DQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH  419 (420)
Q Consensus       346 ~~~--~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  419 (420)
                      .++  +..|..+|+.|.+..+.+.+.....|.+.+..++        +....+.+.++..+++.++.++ .+|+.+
T Consensus       409 ~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~--------~~~~~~~~~gv~~~~aa~~~~~-~~~~~~  475 (477)
T TIGR01301       409 SSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG--------GNLPAFVVGAVAAFVSGLLALI-LLPRPR  475 (477)
T ss_pred             ccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC--------CCeeHHHHHHHHHHHHHHHHHH-hCCCCC
Confidence            884  5669999999999999999999999997776643        3456778888888888888877 666543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.92  E-value=5.2e-22  Score=185.19  Aligned_cols=344  Identities=14%  Similarity=0.134  Sum_probs=222.7

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL   82 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~   82 (420)
                      +|+|-++ .      ..|+.+.+.++..++.++.|+++|.||||.+++.+.++..++.++++.++|...++++-.+.|+|
T Consensus        72 ~diG~~~-~------~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~Gvg  144 (599)
T PF06609_consen   72 ADIGGSD-N------WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVG  144 (599)
T ss_pred             HhcCCCc-c------chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHh
Confidence            4666553 4      58999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhHhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHH
Q 014682           83 NGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG  162 (420)
Q Consensus        83 ~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~  162 (420)
                      .|........++|..|.|.|....++.....-.....+|.++..+..       ..+|||.|         .+..+...+
T Consensus       145 aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~-------~~~WRw~~---------~~~~i~~~i  208 (599)
T PF06609_consen  145 AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA-------HSGWRWIF---------YIFIIWSGI  208 (599)
T ss_pred             hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc-------CCCcchHH---------HHHHHHHHH
Confidence            88776666679999999999888877776655555567777766655       45666555         333333333


Q ss_pred             HH--HHHHhcccccCCCCCCCCcccchhHhhhh---------------------h-hhhh--------------------
Q 014682          163 VT--IAAFWLPETLHRHNDDDDSCDVSYDALES---------------------A-SAEV--------------------  198 (420)
Q Consensus       163 ~~--~~~~~l~e~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~--------------------  198 (420)
                      .+  ...++.|++++..+.++...++...+++-                     . ..+.                    
T Consensus       209 ~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~  288 (599)
T PF06609_consen  209 ALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFV  288 (599)
T ss_pred             HHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHH
Confidence            22  22333443322211111111111111110                     0 0000                    


Q ss_pred             -hhh--hcCCCCchhhhccc-hhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCch---hhHHHHHHHHHHHHH
Q 014682          199 -KEE--EGREATPKKSLLKN-WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYST---QMVGEVLAITGFSLL  271 (420)
Q Consensus       199 -~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~  271 (420)
                       .|.  ..+++....+++|+ |.+...++..++..+.+.+...++|......     ++-++   ...+......+.+..
T Consensus       289 ~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~v-----f~~d~~~~~~~~~~s~~~~fg~~  363 (599)
T PF06609_consen  289 VWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNV-----FGSDPISITEIGWISSPVGFGSC  363 (599)
T ss_pred             HhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccCCCcccceeehhhhhHHHHHH
Confidence             022  12345567788998 4555555566666666666666777665544     23222   245667677777777


Q ss_pred             HHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcch
Q 014682          272 VFQLSLYPFLERILGP-IMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQ  350 (420)
Q Consensus       272 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (420)
                      .+.. +.+.+.++.++ |..+..+..++.+++.++......+....+    ...++.+++.+..........+-..|+++
T Consensus       364 ~g~~-i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i----~~~~l~g~giG~~~~~~~~~~ql~~p~~~  438 (599)
T PF06609_consen  364 AGAV-ILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAI----AFLVLAGFGIGGILVPAIVIAQLIVPDED  438 (599)
T ss_pred             HHHH-HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHH----HHHHHHHHhHHHHHHHHHHeeEeeeCchH
Confidence            7766 45555555555 445456665555544444433322222222    22333334444455555666666789999


Q ss_pred             hhHHhhHHHHHHHHHHHHhhhhhhHHHHh
Q 014682          351 RGAANGIAMTGMSLFKAAGPAGGGALFSW  379 (420)
Q Consensus       351 ~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  379 (420)
                      .|++.|+..+++.+|+.+|..+...++..
T Consensus       439 ig~a~gL~~s~R~~GGsIg~aIy~~I~~n  467 (599)
T PF06609_consen  439 IGTATGLTGSIRSIGGSIGYAIYNAIFTN  467 (599)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            99999999999999999999998777654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.90  E-value=5.4e-20  Score=170.67  Aligned_cols=364  Identities=18%  Similarity=0.137  Sum_probs=256.8

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhH-HHHHHHHHHHHHHHhhh-hh-HHHHHHHHHHhhhhccchhhh-
Q 014682           14 IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI-IMGTASVVIFNTLFGLS-VN-FWMAVLTRFLLGSLNGLLGPI-   89 (420)
Q Consensus        14 ~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l-~~~~~~~~~~~~~~~~~-~~-~~~l~~~r~l~G~~~g~~~~~-   89 (420)
                      .+.+.++..++..+..++..|+.|.++|+-|+||.+ .....+..+++....+. ++ ++...+.-++.-++.+..... 
T Consensus        68 ~~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfy  147 (477)
T PF11700_consen   68 TSSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFY  147 (477)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678899999999999999999999999865554 55556666666666663 43 433333344444566666666 


Q ss_pred             Hhhhhhhchhhhh--------------------------hhHHHHHHHHhHHHHHHHHHHHhHhccccccCCcccccccc
Q 014682           90 KAYACEIFREEHQ--------------------------ALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESL  143 (420)
Q Consensus        90 ~~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~  143 (420)
                      .+++.|..+++++                          ++..+.-.....+|.++.-.+.-.+....++       . .
T Consensus       148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~-------~-~  219 (477)
T PF11700_consen  148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGS-------T-A  219 (477)
T ss_pred             HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCC-------c-c
Confidence            8999999998888                          8999988888889988887777665542111       0 0


Q ss_pred             ccCccchHHHHHHHHHHHH-HHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHH
Q 014682          144 FGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSI  222 (420)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~-~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (420)
                      -+..+.|..+.+.++.-++ .+...+++||.|+.++.++.. .......           ++.....+++.|.|.....+
T Consensus       220 ~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~-~~~~~g~-----------~~l~~t~k~~~~~~~~~~fL  287 (477)
T PF11700_consen  220 SNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGS-SYLRFGF-----------KRLWRTFKEIRKLRQLFLFL  287 (477)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcch-hHHHHHH-----------HHHHHHHHHHHhChHHHHHH
Confidence            0133456666666666555 345567788776532221111 1110000           01123456667788888888


Q ss_pred             HHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHHHHHH
Q 014682          223 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI--MVARIAGVLTIP  300 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  300 (420)
                      +.++++.-...........|..+.     +|++..+...+.....+.++++++ +.++++||+|.|  +.+........+
T Consensus       288 ia~~l~~dg~~ti~~~~~i~a~~~-----lg~s~~~l~~~~l~~~i~a~~Ga~-~~g~l~~r~g~k~~~~l~~~l~~~~~  361 (477)
T PF11700_consen  288 IAYFLYSDGVNTIISFAGIYATEV-----LGMSTTQLIVFGLVVQIVAIIGAL-LFGWLQDRFGPKTKRTLLISLILWII  361 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-----cCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCchhHHHHHHHHHHHH
Confidence            988888877777777778887766     899999999999999999999988 778999999988  666666555433


Q ss_pred             HHHHHHH--HHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHH
Q 014682          301 LLTSYPY--IAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFS  378 (420)
Q Consensus       301 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  378 (420)
                      ..+...+  .+...+......+.+..++.+.+.+..++...++.+++.|+++.+..+|+........+.+||.+.|.+.+
T Consensus       362 i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~  441 (477)
T PF11700_consen  362 IPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITD  441 (477)
T ss_pred             HHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222111  11111112222355566677788889999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          379 WAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       379 ~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      .++         +.+..+....++.+++.++...
T Consensus       442 ~tg---------~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  442 ATG---------SQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             HhC---------CchhHHHHHHHHHHHHHHHHhh
Confidence            994         4778888888888888777655

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09669 putative symporter YagG; Provisional

Probab=99.90  E-value=1.6e-20  Score=176.22  Aligned_cols=334  Identities=16%  Similarity=0.072  Sum_probs=212.2

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh----cCCch-hHHHHHHHHHHHHHHHhhhhh------HH
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKP-VIIMGTASVVIFNTLFGLSVN------FW   70 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grk~-~l~~~~~~~~~~~~~~~~~~~------~~   70 (420)
                      .+++|++..+      +|.+.++..+..++..|+.|.++||    +|||| .++.+.+..+++..+....++      +.
T Consensus        37 t~~~gls~~~------~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~  110 (444)
T PRK09669         37 TDVFGLSAAI------MGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKII  110 (444)
T ss_pred             HHhcCCCHHH------HHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence            3678899989      9999999999999999999999998    78754 455677777777665544432      45


Q ss_pred             HHHHHHHHhhhhccchhhh-Hhhhhhhc-hhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCcc
Q 014682           71 MAVLTRFLLGSLNGLLGPI-KAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  148 (420)
Q Consensus        71 ~l~~~r~l~G~~~g~~~~~-~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~  148 (420)
                      .+++..++.+.+.....+. .++.+|+. ++++|.+..++.....++|..+++.+...+..       .++... . +.+
T Consensus       111 ~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~-------~~~~~~-~-~~g  181 (444)
T PRK09669        111 YACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVD-------ILGKGD-E-QKG  181 (444)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCCc-h-hhh
Confidence            6666666667655554444 88899988 56889999999988889988888876665554       121110 0 335


Q ss_pred             chHHHHHHHHHHHHHHH-HHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHH
Q 014682          149 YFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV  227 (420)
Q Consensus       149 ~~~~~~~~~~~~~~~~~-~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (420)
                      |+....+.++..++..+ ..+..+|.++.++  + +                  +.+..+..++++|||+++......++
T Consensus       182 ~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~--~-~------------------~~~~~~~~~~~~~n~~~~~l~~~~~~  240 (444)
T PRK09669        182 YFYAMMVMGLLGVVLFFCCFFMTKERYTPEV--D-N------------------SSSVWKDLKLLLGNSQWRIMFIFNVV  240 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEEecCCCC--c-C------------------CCCHHHHHHHHhCCchHHHHHHHHHH
Confidence            56555555555544433 3334454322111  0 0                  00112345678899998887776665


Q ss_pred             HHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 014682          228 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPY  307 (420)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (420)
                      ............+ |+.+..    .+ +++..+.......+..+++.+ +.+++.||+|+|+....+.....+.......
T Consensus       241 ~~~~~~~~~~~~~-y~~~~~----~~-~~~~~~~~~~~~~i~~ii~~~-~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~  313 (444)
T PRK09669        241 LLTAVVTRGGATL-YYVNYV----LL-RPDLATLFLVTGMIAGLFGAL-LSERLLGKFDRVRAFKWTIVAFVILSALIFF  313 (444)
T ss_pred             HHHHHHHHhhhhh-eeeeee----cC-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            5444433333333 332221    22 223333444444455555544 6778888899999888776655443332222


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-------cchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhh
Q 014682          308 IAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  380 (420)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  380 (420)
                      ..  .. . ...+.+...+.+++.....+..+++.+|..+       .+..|...|..+....+|..+|+.+.|.+.+..
T Consensus       314 ~~--~~-~-~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~  389 (444)
T PRK09669        314 IP--PS-N-VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV  389 (444)
T ss_pred             hC--cc-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            21  11 1 2223334445566677778888899988775       334567789999999999999999999999987


Q ss_pred             hh
Q 014682          381 QK  382 (420)
Q Consensus       381 ~~  382 (420)
                      +-
T Consensus       390 Gy  391 (444)
T PRK09669        390 DY  391 (444)
T ss_pred             CC
Confidence            54

>TIGR00788 fbt folate/biopterin transporter

Probab=99.90  E-value=7.6e-22  Score=184.93  Aligned_cols=347  Identities=13%  Similarity=0.040  Sum_probs=221.8

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcC-----CchhHHHHHHHHH-HHHHHHhhhhhHHHHH-H
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKPVIIMGTASVV-IFNTLFGLSVNFWMAV-L   74 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rk~~l~~~~~~~~-~~~~~~~~~~~~~~l~-~   74 (420)
                      .+++|+++++      ++...+...+...+-.+ +|+++||++     ||+.++++.++.. +.....+..++..... +
T Consensus        53 ~~~lg~s~~~------i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~  125 (468)
T TIGR00788        53 TDDLGLDGAR------YQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAA  125 (468)
T ss_pred             HHhcCCCHHH------HHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            4678999999      99999999999988655 999999998     7777777776663 4434344445544444 4


Q ss_pred             HHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHH---HHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccch
Q 014682           75 TRFLLGSLNGLLGPI-KAYACEIFREEHQALGLST---VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  150 (420)
Q Consensus        75 ~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~  150 (420)
                      .+++.+++.+...++ .++..|..+ |++....+.   .....++|.++|+.++|.+.+       .++|+..|      
T Consensus       126 ~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~-------~~~~~~~f------  191 (468)
T TIGR00788       126 FIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD-------KTLTRILF------  191 (468)
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH-------hcCcchHH------
Confidence            788999998888887 999999998 555443333   334445899999999999998       55565544      


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHH-HH
Q 014682          151 LPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV-FS  229 (420)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  229 (420)
                         .+.+...++..+...++||+++....+.++++.  ...........+..++......+.+++|.++...+..++ +.
T Consensus       192 ---~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~  266 (468)
T TIGR00788       192 ---LITAALLLLQLFVSNLSKERRAFVRPRIGTYLE--MNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYA  266 (468)
T ss_pred             ---HHHHHHHHHHHHHHHhcccccccccccccccch--hhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHh
Confidence               555555555555567788864211111100000  000000000000000111234455778887765554444 22


Q ss_pred             hhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q 014682          230 LHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA  309 (420)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (420)
                      .....   ..+.++   ...+..|+++.+.|......+++.+++.. ..++..+|++.|+.+..+.++..++........
T Consensus       267 ~~~~~---~~~~f~---~~~~~lG~s~~~~G~~~~~~~v~~i~g~~-~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~  339 (468)
T TIGR00788       267 NLPGA---SGSVFC---ATTQCLPGGPSFSGMSKVVGNLGSLCGVG-GYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILV  339 (468)
T ss_pred             hcCCC---CceeEE---EEcccCCCCcchhhhHHHHHHHHHHHHHH-HHHHHHhhCCHHHHHHHHHHHHHHHHhCceeee
Confidence            11111   111111   12234899999999999999999999988 455555788999998888887777654432111


Q ss_pred             Hhhh----hHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhh
Q 014682          310 MLSG----FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQ  381 (420)
Q Consensus       310 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  381 (420)
                      ....    ......+.....+..+...........++++..|++.+|+.+++.+.+.++|..+++.++|.+.++.+
T Consensus       340 ~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       340 KRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             eccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            0000    01111222333334444455566668888999999999999999999999999999999999999885

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.89  E-value=8.3e-20  Score=168.99  Aligned_cols=376  Identities=15%  Similarity=0.069  Sum_probs=210.5

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhc-CCchhHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTASVVIFNTLFGLSV-NFWMAVLTRFLL   79 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~   79 (420)
                      ++++|.++.+      .+.+.+.+.....++.++.|+++||+ ||||+++++.++..++.++.+..+ +...+.++..+.
T Consensus        37 ~~~lgls~~~------a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li  110 (493)
T PRK15462         37 TNQLKYDDNH------AYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAII  110 (493)
T ss_pred             HHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence            3567889888      99999999999999999999999999 999999999999999987776543 223344444455


Q ss_pred             hhhccchhhh-Hhhhhhhchhh--hhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHH
Q 014682           80 GSLNGLLGPI-KAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI  156 (420)
Q Consensus        80 G~~~g~~~~~-~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  156 (420)
                      .++.|...+. .++++|.+|++  +|.+++++...+.++|..++|.+.+++.+       ..||+..|         ...
T Consensus       111 ~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~-------~~Gw~~~F---------~ia  174 (493)
T PRK15462        111 VCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE-------EYSWAMGF---------GLA  174 (493)
T ss_pred             HHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh-------hhChHHHH---------HHH
Confidence            5666777675 88999999875  69999999999999999999999999988       55665544         444


Q ss_pred             HHHHHHHHHHHHh----cccccCCCCCCCCcccchh---------H----hhhhhh-hhhhhh----------------h
Q 014682          157 SLFAFGVTIAAFW----LPETLHRHNDDDDSCDVSY---------D----ALESAS-AEVKEE----------------E  202 (420)
Q Consensus       157 ~~~~~~~~~~~~~----l~e~~~~~~~~~~~~~~~~---------~----~~~~~~-~~~~~~----------------~  202 (420)
                      ++..++.++..+.    +++....++++.++++...         .    ...... .+....                .
T Consensus       175 aigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (493)
T PRK15462        175 AVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKI  254 (493)
T ss_pred             HHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333332222222    2221111111111000000         0    000000 000000                0


Q ss_pred             cCCCCchhhhccchhHHHHH---HHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 014682          203 GREATPKKSLLKNWPLMSSI---IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP  279 (420)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  279 (420)
                      ...+.+..+  |+ +.+...   +...++...+....+.+..|..+....+-.|++- ..+...+.+.+..++.++++..
T Consensus       255 ~~~~~~~~e--r~-r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~i-p~~~~qslNp~~ii~l~P~~a~  330 (493)
T PRK15462        255 YRKAENQKQ--RK-ELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTV-PTAMFQSINAFAVMLCGVFLAW  330 (493)
T ss_pred             HHhcCCHHH--Hh-hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceee-CHHHHHhHhHHHHHHHHHHHHH
Confidence            000011011  11 222222   2222222222222233444444332222133321 2344556666666666554444


Q ss_pred             HHHHhhch------HHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcch
Q 014682          280 FLERILGP------IMVARIAGVLTIPLLTSYPYIAMLS---GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQ  350 (420)
Q Consensus       280 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (420)
                      ...++.++      ..-...+.++..++.+.+.......   ......+++...++...+.....|...+.+++..|++.
T Consensus       331 lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~  410 (493)
T PRK15462        331 VVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGV  410 (493)
T ss_pred             HHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHH
Confidence            33332111      1124566666666665554432211   11233335566667788999999999999999999999


Q ss_pred             hhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCC------CCCCchHHHHHHHHHHHHH
Q 014682          351 RGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDAS------FLPGSQMVFFVLNVVEAIG  406 (420)
Q Consensus       351 ~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~------~~~g~~~~f~~~~~~~~~~  406 (420)
                      +|..+|+.....   .++++.+.|.+.+.........      ....+...|...+.+.++.
T Consensus       411 ~g~~mg~w~l~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        411 TGVLTGIYMLLS---GAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            999999884422   2445555555555442111000      0114566777777665554

>PTZ00207 hypothetical protein; Provisional

Probab=99.89  E-value=1.1e-20  Score=177.65  Aligned_cols=372  Identities=12%  Similarity=0.082  Sum_probs=235.1

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhh------hhHHHHHH
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS------VNFWMAVL   74 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~------~~~~~l~~   74 (420)
                      +++++|+|..|      .+++.++. ......+++.|++.||+|||+++.++.+++.++.++++++      ++++.+++
T Consensus        53 L~~~lgls~~~------l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l  125 (591)
T PTZ00207         53 MQARYNLTQRD------LSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSV  125 (591)
T ss_pred             HHHHhCcCHHH------HHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence            35789999999      89888774 3455678889999999999999999999999999999997      68999999


Q ss_pred             HHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHH-HHHHHhHhccccccCCccccccccccCccchHH
Q 014682           75 TRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLII-GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP  152 (420)
Q Consensus        75 ~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~  152 (420)
                      .|++.|++.+...+. ...+.+++| ++||++.++...+.++|.++ +++..+++.+         +|+.         .
T Consensus       126 ~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~---------~~~~---------~  186 (591)
T PTZ00207        126 YNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD---------NTSA---------Y  186 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHH---------H
Confidence            999999998887776 888899986 68999999999999999986 4444444432         2222         1


Q ss_pred             HHHHHHHHHH-HHHHHHhccccc--CCC--CCCCCcccch-----------------h---------------------H
Q 014682          153 CLCISLFAFG-VTIAAFWLPETL--HRH--NDDDDSCDVS-----------------Y---------------------D  189 (420)
Q Consensus       153 ~~~~~~~~~~-~~~~~~~l~e~~--~~~--~~~~~~~~~~-----------------~---------------------~  189 (420)
                      ++..++..++ .++...++++.+  .+.  +++.+++++.                 .                     +
T Consensus       187 fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~  266 (591)
T PTZ00207        187 FFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALV  266 (591)
T ss_pred             HHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHH
Confidence            2333333333 333444444333  211  1111111111                 0                     0


Q ss_pred             ----------------hh----------------hhh--h-h-h--hh------------hh-------h---cCCCCch
Q 014682          190 ----------------AL----------------ESA--S-A-E--VK------------EE-------E---GREATPK  209 (420)
Q Consensus       190 ----------------~~----------------~~~--~-~-~--~~------------~~-------~---~~~~~~~  209 (420)
                                      .+                +..  . + +  ..            +.       +   ++...+.
T Consensus       267 ~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~  346 (591)
T PTZ00207        267 AYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETF  346 (591)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchH
Confidence                            00                000  0 0 0  00            00       0   0011255


Q ss_pred             hhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCcc-CCchhh--HHHHHHHHHHHHHHHHHHHHHHHH----
Q 014682          210 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGL-NYSTQM--VGEVLAITGFSLLVFQLSLYPFLE----  282 (420)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~----  282 (420)
                      .+.+++..+|.....+++.........+-..+....      + |.+.+.  ...+.+..++.+.+|++ ..+..+    
T Consensus       347 ~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~s------l~g~~~~~~~~~~~vsL~si~~~~GRl-~~g~~~~~~~  419 (591)
T PTZ00207        347 IEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTA------LAGEAPDDALNTLLTVLNGVGSAVGRL-CMSYFEIWSQ  419 (591)
T ss_pred             HHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHH------hcCCCCCccceeeehhhhhHHHHhhHH-HHHHHHHHHH
Confidence            666778889988888888766655554444433332      3 442222  22266777888888877 555555    


Q ss_pred             Hhhc----hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHH
Q 014682          283 RILG----PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIA  358 (420)
Q Consensus       283 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  358 (420)
                      +|..    +|+........+.++.+++...  .+.    ..+.+..++.++..+...+.....++|++. ++-|+-+-+.
T Consensus       420 ~~~~~~r~prt~~l~~~~~~~~~~lll~~~--~p~----~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~  492 (591)
T PTZ00207        420 KRRAEDRVPITIALFIPSVCIITMLTLFLT--LPK----AALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFC  492 (591)
T ss_pred             hhccccccchhHHHHHHHHHHHHHHHHHHH--CCc----cHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHH
Confidence            3321    1122222222233333333222  111    135566666677788888999999999999 9999999888


Q ss_pred             HHHHHHHHHHh-hhhhhHHHHhhhhccCCC---CCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          359 MTGMSLFKAAG-PAGGGALFSWAQKRLDAS---FLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       359 ~~~~~~g~~~g-~~~~g~l~~~~~~~~~~~---~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      ....-+|..+- -.+.|.+||.-.+..+..   ...=++.+|++++++++++.+....
T Consensus       493 ~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~  550 (591)
T PTZ00207        493 FLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY  550 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence            88888888776 678899999865332211   1113778999999999988777554

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.88  E-value=3.4e-22  Score=163.77  Aligned_cols=365  Identities=16%  Similarity=0.140  Sum_probs=237.4

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchhHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVIFNTLFG---LSVNFWMAVLTRFL   78 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l   78 (420)
                      +|.+++..+      ..++.+.|+....+-..+.|++.|| +|.|..-++-++...++.++++   ..+.+|.+..+|++
T Consensus        72 ~d~ni~~ak------ftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~  145 (459)
T KOG4686|consen   72 LDSNIEYAK------FTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFL  145 (459)
T ss_pred             cccccceee------eeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhee
Confidence            455566667      8899999999999999999999996 6888777776667777777765   47899999999999


Q ss_pred             hhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHH
Q 014682           79 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS  157 (420)
Q Consensus        79 ~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  157 (420)
                      .|+|.-....+ ..++.-|++.|+.+.++|+.....-+|..+--.+.+++++..+......|-. ..   +.+.  ....
T Consensus       146 FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT-~L---G~~l--~~~~  219 (459)
T KOG4686|consen  146 FGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHT-LL---GLWL--CFEV  219 (459)
T ss_pred             eccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHH-HH---HHHH--HHHH
Confidence            99987777777 9999999999999999999999999999988888888887433211001100 00   0000  0111


Q ss_pred             HHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHH
Q 014682          158 LFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSE  237 (420)
Q Consensus       158 ~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (420)
                      ......++....+-    ...++.       |++...++...  .+.++.....-+ .|++|...+.++++....+.+.+
T Consensus       220 ~tc~~slical~lg----~~D~rA-------erilh~e~g~~--Ge~pkLtdv~~f-~ppfw~~~iicv~yyva~fPFi~  285 (459)
T KOG4686|consen  220 KTCKQSLICALSLG----LSDDRA-------ERILHLEEGFL--GEEPKLTDVNTF-YPPFWVLVIICVLYYVAWFPFIT  285 (459)
T ss_pred             HHHHHHHHHHHHhh----hhhhHH-------HHHHhhhcCcc--cCCccccccccc-CccHHHHHHHHHHHHHHHHHHhh
Confidence            11111111111110    000000       00000000000  001111111112 46788888888888888777777


Q ss_pred             HHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 014682          238 IFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLA  317 (420)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (420)
                      .-|.++++.     +|+|+..++.+.+.....+.+.+. +.+.+.||.|++.....+..+..+..-.....+..+   .+
T Consensus       286 lg~~fF~~r-----fGlS~~~a~~i~s~vy~Isav~sp-vfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~ls---Py  356 (459)
T KOG4686|consen  286 LGPMFFQKR-----FGLSAVSAGNILSTVYGISAVLSP-VFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLS---PY  356 (459)
T ss_pred             hhHHHHHHh-----hCCChhhccchhhhhhhhhhhhhh-hHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhcc---HH
Confidence            777777666     899999999999888888888877 667788888887666655544433322222222111   12


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHH
Q 014682          318 FLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFF  397 (420)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~  397 (420)
                          ....+.+..........+..++..+|+++.|++.|.++.++++|-++.|.+.|.+.|..++.+      .....|+
T Consensus       357 ----~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~------~le~ffl  426 (459)
T KOG4686|consen  357 ----TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYD------NLEAFFL  426 (459)
T ss_pred             ----HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchh------hHHHHHH
Confidence                222223334444555567778888999999999999999999999999999999999875432      3455566


Q ss_pred             HHHHHHHHHHHHHhh
Q 014682          398 VLNVVEAIGVLMTFK  412 (420)
Q Consensus       398 ~~~~~~~~~~~~~~~  412 (420)
                      ..+.+.+.+..+.+.
T Consensus       427 ~~~~~aL~svgil~~  441 (459)
T KOG4686|consen  427 IIGLMALTSVGILFY  441 (459)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            666666666655554

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.88  E-value=7e-20  Score=172.88  Aligned_cols=341  Identities=13%  Similarity=0.074  Sum_probs=214.9

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhh----hcCC-chhHHHHHHHHHHHHHHHhhhh------hHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGR-KPVIIMGTASVVIFNTLFGLSV------NFWM   71 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Gr-k~~l~~~~~~~~~~~~~~~~~~------~~~~   71 (420)
                      +.+|++..+      +|.+..+.-+.-++..|+.|.++|    |+|| |+.++.+.+..+++..+....+      .+..
T Consensus        35 ~v~Gls~~~------vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~  108 (473)
T PRK10429         35 DVVGLSVGL------VGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVF  108 (473)
T ss_pred             HhcCCCHHH------HHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHH
Confidence            456888888      999999999999999999999999    6698 5556667777777765554433      1345


Q ss_pred             HHHHHHHhhhhccchhhh-Hhhhhhhc-hhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccc
Q 014682           72 AVLTRFLLGSLNGLLGPI-KAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY  149 (420)
Q Consensus        72 l~~~r~l~G~~~g~~~~~-~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~  149 (420)
                      +++.-++.+++.....+. .++..|.. ++++|.+..+......++|..+.+.+...+.+       .+|....  +.+|
T Consensus       109 ~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~-------~~g~~~~--~~g~  179 (473)
T PRK10429        109 VCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVN-------YVGGGDR--GFGF  179 (473)
T ss_pred             HHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCCch--hhhH
Confidence            555666677776666555 88999998 58999999998778788877766665554433       1221100  1234


Q ss_pred             hHHHHHHHHHHHHHH-HHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHH
Q 014682          150 FLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVF  228 (420)
Q Consensus       150 ~~~~~~~~~~~~~~~-~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (420)
                      +....+.++..++.. ...+..||.++..+.++++++                +.+..+..+.++|||+++..+...++.
T Consensus       180 ~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~----------------~~~~~~~~~~~~~n~~~~~ll~~~~~~  243 (473)
T PRK10429        180 QMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGS----------------HLTLKDIVALIYKNDQLSCLLGMALAY  243 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCceecCCcccccccccc----------------CCCHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            444444444444333 333445664322111100000                011122345567899888877777666


Q ss_pred             HhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 014682          229 SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYI  308 (420)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (420)
                      ...........++|....     .+ +....+.+.....+..+++.+ +.+++.||+|+|+.+..+..+..++.+.+...
T Consensus       244 ~~~~~~~~~~~~y~~~y~-----~~-~~~~~~~~~~~~~i~~ii~~~-~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~  316 (473)
T PRK10429        244 NIASNIINGFAIYYFTYV-----IG-DADLFPYYLSYAGAANLVTLI-LFPRLVKSLSRRILWAGASIFPVLSCGVLLLM  316 (473)
T ss_pred             HHHHHHHhhheeeEEEEE-----CC-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            655444444444333322     22 345566666666677777766 67889999999999887776655554443322


Q ss_pred             HHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-------cchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhh
Q 014682          309 AMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQ  381 (420)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  381 (420)
                      ....... ...+.+...+.+.......+...++.+|..|       .+..|..+|..+....++..+++.+.|.+.+..+
T Consensus       317 ~~~~~~~-~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        317 GLAAPHN-ALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             hccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            1111111 2223334444555666677777888888755       3445669999999999999999999999998765


Q ss_pred             h
Q 014682          382 K  382 (420)
Q Consensus       382 ~  382 (420)
                      -
T Consensus       396 y  396 (473)
T PRK10429        396 Y  396 (473)
T ss_pred             C
Confidence            3

>TIGR01272 gluP glucose/galactose transporter

Probab=99.88  E-value=2e-19  Score=159.44  Aligned_cols=293  Identities=16%  Similarity=0.128  Sum_probs=201.4

Q ss_pred             hhhhhHHHHHHHHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCcc-cccc
Q 014682           64 GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL-FSSE  141 (420)
Q Consensus        64 ~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~-~gw~  141 (420)
                      +...+++.++++-++.|.|.+...+. +.++++..++|++.+.+++.+..+++|..++|.+++.+.......... .+-.
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            35678999999999999999999997 999999999999999999999999999999999999988421100000 0000


Q ss_pred             ccccCccchHHHHHHHHHHHHHHHHHHh--cccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHH
Q 014682          142 SLFGKFPYFLPCLCISLFAFGVTIAAFW--LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM  219 (420)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (420)
                      ... ...|+.+++..+...++..+.+.+  +||.++++.+     +..              + ++....++.+|+|.++
T Consensus        85 ~~~-~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~-----~~~--------------~-~~~~~~~~~~~~~~~~  143 (310)
T TIGR01272        85 NAE-AAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVA-----RVS--------------S-GDTTQKTSAFQFTHLV  143 (310)
T ss_pred             hHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccccc-----ccc--------------c-ccccchhhHHhhHHHH
Confidence            000 124566666454443333333333  3443221110     000              0 0001123467788888


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 014682          220 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTI  299 (420)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (420)
                      ...+..+++.....+..++.+.|+.+.   ..+|+++.+.+...+....+.+++++ +..++.||+++++.+..+..+..
T Consensus       144 l~~~~~f~yvg~e~~~~~w~~~yl~~~---~~~g~s~~~a~~~~s~~~~~~~iGr~-~~~~l~~r~g~~~~l~~~~~l~~  219 (310)
T TIGR01272       144 LGALGIFVYVGAEVSAGSFLVNFLSDP---HALGLPEDQAAHFTAYTWGGAMVGRF-IGSAVMPMISQGRYLAFNAFLAV  219 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCHHHHHHHHHHHHH
Confidence            877877887778888889999998643   12589999999999999999999988 78888889999888888777666


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHh
Q 014682          300 PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW  379 (420)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  379 (420)
                      +..++.....   .....    ....+.+++....+|...+...+..| ++.+++.++. ....+|+++.|.+.|.+.|.
T Consensus       220 ~~~~l~~~~~---~~~~~----~~~~l~g~~~s~i~P~~~s~a~~~~~-~~~~~asai~-~~~~~Gg~i~P~l~G~lad~  290 (310)
T TIGR01272       220 LLSIGAALTH---GYVAM----WFVLALGLFNSIMFPTIFSLALNALG-RHTSQGSGIL-CLAIVGGAIVPLLQGSLADC  290 (310)
T ss_pred             HHHHHHHHcC---CHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHH-HHHHhcchHHHHHHHHHHHh
Confidence            6554333221   11111    12224556778888998888888776 4466777775 67889999999999999998


Q ss_pred             hhhccCCCCCCCchHHHHHHH
Q 014682          380 AQKRLDASFLPGSQMVFFVLN  400 (420)
Q Consensus       380 ~~~~~~~~~~~g~~~~f~~~~  400 (420)
                      .          |.+..|++..
T Consensus       291 ~----------g~~~a~~v~~  301 (310)
T TIGR01272       291 L----------GIQLAFALPV  301 (310)
T ss_pred             c----------cchHHHHHHH
Confidence            7          6777776433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.88  E-value=1.6e-20  Score=175.31  Aligned_cols=336  Identities=14%  Similarity=0.111  Sum_probs=240.5

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhh----hcCCchhH-HHHHHHHHHHHHHHhhh-h-------hH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPVI-IMGTASVVIFNTLFGLS-V-------NF   69 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grk~~l-~~~~~~~~~~~~~~~~~-~-------~~   69 (420)
                      +.+|+++..      .|.+..+..+..++..|+.|.++|    |+||||.. +.+.+..+++..+.... |       ..
T Consensus        30 ~~~gl~~~~------~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~  103 (428)
T PF13347_consen   30 DVLGLSPAL------AGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKL  103 (428)
T ss_pred             HHcCCCHHH------HHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence            455777777      999999999999999999999999    89976655 56778888888777765 4       23


Q ss_pred             HHHHHHHHHhhhhccchhhh-Hhhhhhhch-hhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCc
Q 014682           70 WMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  147 (420)
Q Consensus        70 ~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~  147 (420)
                      ..+.+.-++..++....... .++..|..+ +++|.+..+.-.....+|..+...+.+.+.+       .+|....  ..
T Consensus       104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~-------~~g~~~~--~~  174 (428)
T PF13347_consen  104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVS-------WFGGGDT--SN  174 (428)
T ss_pred             HHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh-------hhccCcc--ch
Confidence            34566666667776666555 899999998 5789999999999999999877777777765       2221100  01


Q ss_pred             cchHHHHHHHHHHHHH-HHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHH
Q 014682          148 PYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYC  226 (420)
Q Consensus       148 ~~~~~~~~~~~~~~~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (420)
                      +|+....+.++..++. ++..+..+|.+++.++++                   ++.+..+..++++|||+++......+
T Consensus       175 ~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~-------------------~~~~~~~~~~~~~~nr~~~~l~~~~~  235 (428)
T PF13347_consen  175 GYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQE-------------------KKISLRDSLRSLFRNRPFRILLLAFF  235 (428)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhheeeeccccccccc-------------------cccccccchhhhcccchHHHHHHHHH
Confidence            4566556666655554 344566677211111111                   02223455788999999998888888


Q ss_pred             HHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 014682          227 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYP  306 (420)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (420)
                      +............++|..+.     .+.+ ...+.......+..+++.+ +.+++.||+|+|+....+..+.+++.+...
T Consensus       236 ~~~~~~~~~~~~~~y~~~~v-----l~~~-~~~~~~~~~~~~~~~v~~~-~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~  308 (428)
T PF13347_consen  236 LQWLAFALMNTFLPYYFTYV-----LGNE-GLISIFMLIFFVASIVGSP-LWGRLSKRFGKKKVYIIGLLLAALGFLLLF  308 (428)
T ss_pred             HHHhhhhhhhhHHHHHHHHH-----hcCc-hhhHHHHHHHHHHHHHHHH-HHHHHHHHccceeehhhhHHHHHHHHHHHH
Confidence            87777666666666666554     4444 4456666666777777766 779999999999999999998888877766


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-------cchhhHHhhHHHHHHHHHHHHhhhhhhHHHHh
Q 014682          307 YIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQRGAANGIAMTGMSLFKAAGPAGGGALFSW  379 (420)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  379 (420)
                      +...    .......+...+.+.+.........++.+|..+       ++..|...|+.+....++..+++.+.|.+.+.
T Consensus       309 ~~~~----~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~  384 (428)
T PF13347_consen  309 FLGP----GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL  384 (428)
T ss_pred             HHHh----hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            6542    122334455555566667777888888888776       34579999999999999999999999999988


Q ss_pred             hhhc
Q 014682          380 AQKR  383 (420)
Q Consensus       380 ~~~~  383 (420)
                      .+-.
T Consensus       385 ~Gy~  388 (428)
T PF13347_consen  385 VGYD  388 (428)
T ss_pred             hCcC
Confidence            6543

>PRK09848 glucuronide transporter; Provisional

Probab=99.87  E-value=4e-19  Score=166.99  Aligned_cols=328  Identities=17%  Similarity=0.125  Sum_probs=201.1

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhc----CCchhH-HHHHHHHHHHHHHH-hh----hh--hH
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY----GRKPVI-IMGTASVVIFNTLF-GL----SV--NF   69 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~----Grk~~l-~~~~~~~~~~~~~~-~~----~~--~~   69 (420)
                      ++++|++..+      +|.+.+...+..++..++.|+++||.    ||||.. ..+.+...+...+. ..    ++  ..
T Consensus        36 ~~~~gl~~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (448)
T PRK09848         36 TDVAGVGAAA------AGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKV  109 (448)
T ss_pred             HHHcCCCHHH------HHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHH
Confidence            3567888888      99999999999999999999999996    777655 55555444443332 21    11  22


Q ss_pred             HHHHHHHHHhhhhccchhhh-Hhhhhhhch-hhhhhhHHHHHHHHhH-----HHHHHHHHHHhHhccccccCCccccccc
Q 014682           70 WMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWG-----IGLIIGPALGGFLAQPAEKYPNLFSSES  142 (420)
Q Consensus        70 ~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~-----~g~~~g~~l~~~l~~~~~~~~~~~gw~~  142 (420)
                      ...++.-++.+++.+...+. .++..+..+ +++|.+..+.-..+.+     ++..++|.+++....       ..    
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~-------~~----  178 (448)
T PRK09848        110 VYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPE-------EM----  178 (448)
T ss_pred             HHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------ch----
Confidence            33444556677777766654 666666654 5678887766654433     455556665543321       00    


Q ss_pred             cccCccchHHHHHHHHHHHHH-HHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHH
Q 014682          143 LFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSS  221 (420)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (420)
                         ...|.....+.++..++. ++.....||+++.+.++    .                  ......++++|||+++..
T Consensus       179 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~----~------------------~~~~~~~~l~~n~~f~~~  233 (448)
T PRK09848        179 ---VSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQ----P------------------SLKISLQTLKRNRPLFML  233 (448)
T ss_pred             ---hhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccC----C------------------CHHHHHHHHhCCchHHHH
Confidence               001111111222222222 22333445543211100    0                  011235678999999888


Q ss_pred             HHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 014682          222 IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPL  301 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (420)
                      .+..++............+.|..+.     +|.++...+.......+..+++.. +.+++.||+++|+.+..+..+..++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~r~g~~~~~~~g~~~~~i~  307 (448)
T PRK09848        234 CIGALCVLISTFAVSASSLFYVRYV-----LNDTGLFTVLVLVQNLVGTVASAP-LVPGMVARIGKKNTFLIGALLGTCG  307 (448)
T ss_pred             HHHHHHHHHHHHHHhhhheeeEeee-----cCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            8777776666566555555555444     566665555444443455555655 6777888889999999888877776


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcc-------hhhHHhhHHHHHHHHHHHHhhhhhh
Q 014682          302 LTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD-------QRGAANGIAMTGMSLFKAAGPAGGG  374 (420)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~g~~~g~~~~g  374 (420)
                      .+.+.+.+.   ...+ .......+.+.+.....+...++.++..|.+       ++|...|+.+....+|..+++.+.|
T Consensus       308 ~~~~~~~~~---~~~~-~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g  383 (448)
T PRK09848        308 YLLFFWVSV---WSLP-VALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA  383 (448)
T ss_pred             HHHHHHcCc---hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            655543221   1112 2233334455566667777788888877644       4699999999999999999999999


Q ss_pred             HHHHhhh
Q 014682          375 ALFSWAQ  381 (420)
Q Consensus       375 ~l~~~~~  381 (420)
                      .+.+..+
T Consensus       384 ~~l~~~G  390 (448)
T PRK09848        384 FILGLSG  390 (448)
T ss_pred             HHHHHcC
Confidence            9988764

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.86  E-value=2.4e-19  Score=156.59  Aligned_cols=365  Identities=12%  Similarity=-0.006  Sum_probs=250.0

Q ss_pred             cchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchh-HHHHHHHHHHHHHHHhhhhh--H-HHHHHHHHHhhhhccchh
Q 014682           12 EDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV-IIMGTASVVIFNTLFGLSVN--F-WMAVLTRFLLGSLNGLLG   87 (420)
Q Consensus        12 ~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~-l~~~~~~~~~~~~~~~~~~~--~-~~l~~~r~l~G~~~g~~~   87 (420)
                      .+...+.+...++..+..++-+|+.|.++|+.|+||. +-....+..++.+...++++  + +..++.-.+..++.....
T Consensus        54 ~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~  133 (438)
T COG2270          54 ASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSN  133 (438)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhh
Confidence            3455678999999999999999999999999996554 55566666667777777654  4 444455667777777767


Q ss_pred             hh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhH--hccccccCCc-cccccccccCccchHHHHHHHHHHHHH
Q 014682           88 PI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF--LAQPAEKYPN-LFSSESLFGKFPYFLPCLCISLFAFGV  163 (420)
Q Consensus        88 ~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~--l~~~~~~~~~-~~gw~~~~~~~~~~~~~~~~~~~~~~~  163 (420)
                      .. .+++.|..++++-++..+.-.....+|+.+.-+..-.  +.....+++. .++-...- ...-|..+.+.++--++.
T Consensus       134 Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~ri~~~l~A~W~li~  212 (438)
T COG2270         134 VFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPAD-GEDVRITGLLAALWWLLF  212 (438)
T ss_pred             eehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccc-cccchhHHHHHHHHHHHH
Confidence            76 9999999999888888887777777777665544322  1111111100 01111001 223444444444444443


Q ss_pred             -HHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHh
Q 014682          164 -TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLW  242 (420)
Q Consensus       164 -~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (420)
                       +-.++..|+.++..   ..+.+...+..+           +...+.+++.+++++...++..+++.-........-..|
T Consensus       213 ~iPm~~~v~~~~~~~---~~~~~~l~~g~k-----------~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~f  278 (438)
T COG2270         213 ALPMILNVHDAEKIS---SPPPTALRNGFK-----------ELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVF  278 (438)
T ss_pred             HhHHHhccccccccc---ccchHHHHHHHH-----------HHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence             33344444444321   011111111111           112345677778888888888887776666666666666


Q ss_pred             hcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 014682          243 ANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNC  322 (420)
Q Consensus       243 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (420)
                      ....     +|++..+...+.....+.++++++ +.+++++|++.|+++..+.++..+..+...+...  .    .-..+
T Consensus       279 g~~~-----~gls~~~lll~g~~~~vvA~lg~i-i~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~--~----~~f~i  346 (438)
T COG2270         279 GAAD-----LGLSSTELLLIGIALSVVAALGAI-IAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG--E----LDFWI  346 (438)
T ss_pred             HHHH-----cCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc--c----HHHHH
Confidence            6655     899999999999999999999988 7889999999999988888777665554433322  1    12334


Q ss_pred             HHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHH
Q 014682          323 ASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVV  402 (420)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~  402 (420)
                      ..++.+.+.+..+....++..+.+|+++.++.+|+++..+...+..||.+.+.+.+.++         +.+..+....++
T Consensus       347 ~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg---------~~r~g~~~i~vl  417 (438)
T COG2270         347 LGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG---------SSRAGVLSIIVL  417 (438)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc---------chhhHHHHHHHH
Confidence            55566677788899999999999999999999999999999999999999999999985         456677777777


Q ss_pred             HHHHHHHHhh
Q 014682          403 EAIGVLMTFK  412 (420)
Q Consensus       403 ~~~~~~~~~~  412 (420)
                      ..++.+...+
T Consensus       418 l~iGl~~L~~  427 (438)
T COG2270         418 LLIGLLLLLR  427 (438)
T ss_pred             HHhhHhhEEe
Confidence            7777766655

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.86  E-value=3.6e-18  Score=149.81  Aligned_cols=365  Identities=16%  Similarity=0.091  Sum_probs=246.7

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcC-----CchhHHH-HHHHHHHHHHHHhhh-----h---
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKPVIIM-GTASVVIFNTLFGLS-----V---   67 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rk~~l~~-~~~~~~~~~~~~~~~-----~---   67 (420)
                      ..|++++..-      .+...+...+.. ...+.+|..||+.+     ||..+++ +..+...+..+.+++     .   
T Consensus         7 IvEL~vpA~l------v~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~   79 (403)
T PF03209_consen    7 IVELGVPAWL------VALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQ   79 (403)
T ss_pred             HHHhccHHHH------HHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            3566666666      888888888776 46899999999998     8877654 566666655555442     2   


Q ss_pred             ----h--HH--HHHHHHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccc
Q 014682           68 ----N--FW--MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  138 (420)
Q Consensus        68 ----~--~~--~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~  138 (420)
                          +  .+  ...+.-.+.|+|.+..... .++++|..|+|+|+++.++.....-+|.+++..+.+.+.+.       +
T Consensus        80 ~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~-------~  152 (403)
T PF03209_consen   80 QSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP-------F  152 (403)
T ss_pred             ccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc-------c
Confidence                1  22  2333456678887777676 99999999999999999999999999999999999998872       1


Q ss_pred             cccccccCccchHHHHHHHHHHHH--HHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccch
Q 014682          139 SSESLFGKFPYFLPCLCISLFAFG--VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  216 (420)
Q Consensus       139 gw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (420)
                      .        .-|+..++.....+.  .-+...+-.|.+..+..+.++++                +++....++++..+|
T Consensus       153 s--------~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~----------------~~~f~~a~~~~~~~~  208 (403)
T PF03209_consen  153 S--------PERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERP----------------RPPFREAWRQVWASP  208 (403)
T ss_pred             C--------HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCC----------------CccHHHHHHHHHhCC
Confidence            1        122222222222222  22222233333322222111100                111223456677777


Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 014682          217 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  296 (420)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (420)
                      +........++.......-.     -.-+|+--+.+|++..+...+....+.+..++-...+..+.++.++++....++.
T Consensus       209 ~a~~f~~fl~l~t~a~~~QD-----~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~  283 (403)
T PF03209_consen  209 QARRFFVFLFLGTLAFFMQD-----VILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCL  283 (403)
T ss_pred             ChhHHHHHHHHHHHHHHhhH-----HHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence            77666655555444333332     3334444455999999999999999999888877677777778888888888888


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHH
Q 014682          297 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL  376 (420)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l  376 (420)
                      ...+++.++.......+   ...+-...++.++..+.......+...+..++++.|..+|.....+.++..++..++|.+
T Consensus       284 ~~~~~f~lii~a~~~~~---~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~  360 (403)
T PF03209_consen  284 LGALAFALIILAGPLGS---PWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL  360 (403)
T ss_pred             HHHHHHHHHHHHHhccc---chHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888776655443322   223334455566666777777777888888899999999999999999999999999999


Q ss_pred             HHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          377 FSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       377 ~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      .|............+|..+|.+=+...+++..+...
T Consensus       361 ~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~  396 (403)
T PF03209_consen  361 RDLVRALFGNSPALAYGVVFALEAVLLLAALVLLGR  396 (403)
T ss_pred             HHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            998765443212237888888888887777666554

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.83  E-value=4.9e-18  Score=155.81  Aligned_cols=331  Identities=21%  Similarity=0.288  Sum_probs=228.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccc--hhhh-Hhhhhh
Q 014682           19 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL--LGPI-KAYACE   95 (420)
Q Consensus        19 g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~--~~~~-~~~i~~   95 (420)
                      +.-.....+...+.++..|.++||+|||..+........+..+...+..  |++.+   +.|+..+.  .... .++++|
T Consensus        65 ~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vad  139 (463)
T KOG2816|consen   65 GVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVAD  139 (463)
T ss_pred             hHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheee
Confidence            3333344678889999999999999999999999999988888877766  33333   66664443  2333 899999


Q ss_pred             hchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHH-HHHHHhccccc
Q 014682           96 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETL  174 (420)
Q Consensus        96 ~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~e~~  174 (420)
                      ...+++|....++.+.....+..++|.+++.+..                ..+...++.+..+..+.. +...+++||+.
T Consensus       140 is~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~----------------~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl  203 (463)
T KOG2816|consen  140 ISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK----------------FLGIALVFLIAAASGILSLLYMLLFLPESL  203 (463)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----------------hcCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence            9999999999999999999999999999999987                344455556666666554 45677889987


Q ss_pred             CCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhh-HHHHHHHhhcCcccCCccC
Q 014682          175 HRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMA-YSEIFSLWANSPKKLGGLN  253 (420)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  253 (420)
                      .+++++.......    ...... .+...+........-.+|..+......+........ .......|+..+     ++
T Consensus       204 ~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~-----f~  273 (463)
T KOG2816|consen  204 QEKERSDATLREL----TPGSLD-SSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAK-----FG  273 (463)
T ss_pred             Ccccccccccccc----CCCccc-chhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeee-----cC
Confidence            6655431000000    000000 000000111111122233334333333332222111 111222333333     89


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHH
Q 014682          254 YSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVS  333 (420)
Q Consensus       254 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (420)
                      +++.+.+.+.+..+....+++++..+.+.+..+.++.+..+...-......+.+....+..       ............
T Consensus       274 w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~-------~~~~v~~~~~~~  346 (463)
T KOG2816|consen  274 WNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMM-------FAAGVVVALAGI  346 (463)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhh-------hHHHHHHHhhcc
Confidence            9999999999999999999999888999999999998888888888888887776543311       112222234567


Q ss_pred             HHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCC
Q 014682          334 IITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDAS  387 (420)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~  387 (420)
                      ..|...+..+...+++++|+++++...+..+...++|.+.+.++..+.+...+.
T Consensus       347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~~~~~~~  400 (463)
T KOG2816|consen  347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTLDDLPGF  400 (463)
T ss_pred             hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHhcccc
Confidence            788999999999999999999999999999999999999999999988766543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.83  E-value=1.9e-17  Score=149.54  Aligned_cols=341  Identities=17%  Similarity=0.117  Sum_probs=242.9

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhh----hcCCchh-HHHHHHHHHHHHHHHhhhhh------HHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPV-IIMGTASVVIFNTLFGLSVN------FWM   71 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grk~~-l~~~~~~~~~~~~~~~~~~~------~~~   71 (420)
                      +.+|+++..      +|.+..+.-+--++.-|+.|.++|    |+||+|. ++.+.+..++.+.++-.+++      ...
T Consensus        41 dv~Gis~~~------aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~y  114 (467)
T COG2211          41 DVFGLSAAL------AGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIY  114 (467)
T ss_pred             cccCCcHHH------HHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHH
Confidence            456778777      899999999999999999999999    4887555 56677888888888877763      455


Q ss_pred             HHHHHHHhhhhccchhhh-Hhhhhhhch-hhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccc
Q 014682           72 AVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY  149 (420)
Q Consensus        72 l~~~r~l~G~~~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~  149 (420)
                      .++.-.+.+++....... .++.+|.++ ++||.+..++-..+.++|..+...+...+...       +|-+..  ..+|
T Consensus       115 a~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~-------~g~~~~--~~g~  185 (467)
T COG2211         115 ALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKL-------FGGGDK--ALGY  185 (467)
T ss_pred             HHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCcc--hhhH
Confidence            666678888887765554 788888876 78999999999999999988877777666652       221110  3356


Q ss_pred             hHHHHHHHHHHHHHHH-HHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHH
Q 014682          150 FLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVF  228 (420)
Q Consensus       150 ~~~~~~~~~~~~~~~~-~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (420)
                      +....+.++..++..+ +.+-.+|.+.+....++.   .              +.+.......++|||++...++...+.
T Consensus       186 ~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~---~--------------~~~~~~~~~~~~~Nrp~~~~l~~~l~~  248 (467)
T COG2211         186 QGTALVLGVIGVILLLFCFFNVKERVVETQPTKTG---V--------------KLKLKDSFLLIFKNRPLLLLLLMNLLL  248 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCccccCccc---c--------------cccHHHHHHHHHccchHHHHHHHHHHH
Confidence            6655666666655443 344456655422211110   0              111122345688999998888877766


Q ss_pred             HhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 014682          229 SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYI  308 (420)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (420)
                      ........+...+|....     +|.++..............+++.+ ..+.+.+|+|+|+....+.++..++.+.+.+.
T Consensus       249 ~~~~~i~~s~~~yy~~y~-----lg~~~l~~~~~~~~~~~~~l~~~~-~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~  322 (467)
T COG2211         249 FIAFNIRGSIMVYYVTYV-----LGDPELFAYLLLLASGAGLLIGLI-LWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT  322 (467)
T ss_pred             HHHHHHHhhhhheeEEEE-----cCChHHHHHHHHHHHHHHHHHHHH-hHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh
Confidence            666555556666666555     677777777777776666665544 88999999999999999999998888887776


Q ss_pred             HHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-------cchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhh
Q 014682          309 AMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQ  381 (420)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  381 (420)
                      +.    ......++...+.+.+.....+..+++++|..+       .+..|...|....+..+|.+++..+.|++.+..+
T Consensus       323 ~~----~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         323 PA----GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             cC----cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            51    223334444455556677778888888888653       4567889999999999999999999999999886


Q ss_pred             hccC
Q 014682          382 KRLD  385 (420)
Q Consensus       382 ~~~~  385 (420)
                      -..+
T Consensus       399 yv~~  402 (467)
T COG2211         399 YVPN  402 (467)
T ss_pred             CCCC
Confidence            5443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.81  E-value=2e-18  Score=156.10  Aligned_cols=366  Identities=18%  Similarity=0.220  Sum_probs=226.8

Q ss_pred             ccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCC-chhHHHHHHHHHHHHHHH-hhh---h-hHHHHHHHHHH
Q 014682            5 FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVIIMGTASVVIFNTLF-GLS---V-NFWMAVLTRFL   78 (420)
Q Consensus         5 ~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-k~~l~~~~~~~~~~~~~~-~~~---~-~~~~l~~~r~l   78 (420)
                      .+.+.+.      .|++.++..++.+++++..|+++.|.++ |+.++.+.++..++.+++ .+.   + ..+.++++|++
T Consensus        66 ~~A~~~f------fG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l  139 (488)
T KOG2325|consen   66 PTATATF------FGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARIL  139 (488)
T ss_pred             CCCCcch------hhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            4455555      9999999999999999999999999996 899999999999999998 442   3 67899999999


Q ss_pred             hhhhccchhhhHhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCcccccccc--ccCccchHHHHHH
Q 014682           79 LGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESL--FGKFPYFLPCLCI  156 (420)
Q Consensus        79 ~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~--~~~~~~~~~~~~~  156 (420)
                      .|+|.|......+|+++....++|.|+++....+..+|.++||.++..+....+     -|++..  ...+.+-.+.++.
T Consensus       140 ~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~-----~G~~i~~~~~~n~YTap~w~m  214 (488)
T KOG2325|consen  140 TGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGE-----KGFMILPGLIFNMYTAPAWLM  214 (488)
T ss_pred             cCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcC-----CceEEcCcceEEecchHHHHH
Confidence            999999998889999999999999999999999999999999999988775332     121110  1023345566667


Q ss_pred             HHHHHHH-HHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhH
Q 014682          157 SLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAY  235 (420)
Q Consensus       157 ~~~~~~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (420)
                      ++..++. ++..++++|..+...+++.+++++       .+.++++.+..+.+      .+..+...+..+...+.....
T Consensus       215 ~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~d------~~~~~vc~~~~~~~~~~~~~i  281 (488)
T KOG2325|consen  215 AILWIIYIVIILFFFKEVYRGIIDKKKRSVEE-------EKSDIEKVKKPKLD------WVAVLVCIFLRFVVNFIATTI  281 (488)
T ss_pred             HHHHHHHHHHHHhheeecccCccccccccchh-------hccchhhhccCChh------HHHHHHHHHHHHHHHHHHHHH
Confidence            7766664 445667788776554332221100       00000000000000      011122222222222222222


Q ss_pred             HHHHHHhhcCcccCCccCCchh----hHHHHHHHHHHHHHHHHHHHHHHHH-HhhchHHHHHHHHHHHHHHHH--HHHHH
Q 014682          236 SEIFSLWANSPKKLGGLNYSTQ----MVGEVLAITGFSLLVFQLSLYPFLE-RILGPIMVARIAGVLTIPLLT--SYPYI  308 (420)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~  308 (420)
                      .+..+......     ++++.+    ..|...+..++..+...+ ...... .++.+|+.+..+.+.......  .+++.
T Consensus       282 et~~~~~~m~~-----y~w~~~~av~~~gi~~~~~g~ls~~~~l-~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~  355 (488)
T KOG2325|consen  282 ETLSSALTMVM-----YGWTGSEAVLYNGITLSISGILSVILLL-LYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWG  355 (488)
T ss_pred             HhccchHHHHH-----hccccchHHHhhhhHHHHHHHHHHHHHH-HHHHHHhhhhccceeeeehHHHHHHhhheeeeecc
Confidence            22222222111     344433    445566665655555544 222222 233444544444333322222  22221


Q ss_pred             HHhh------------------------hhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHH
Q 014682          309 AMLS------------------------GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL  364 (420)
Q Consensus       309 ~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~  364 (420)
                      ....                        ....+..+....+..+...........++.+|...|++++++.|+.......
T Consensus       356 ~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~  435 (488)
T KOG2325|consen  356 FYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSI  435 (488)
T ss_pred             ccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccch
Confidence            1100                        0011111222233334444455667888999999999999999999999999


Q ss_pred             HHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 014682          365 FKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  410 (420)
Q Consensus       365 g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~  410 (420)
                      +..++|.+...++...          |++..+.+..+..++...+.
T Consensus       436 ~~~~~~~~~t~~~~~~----------g~~~v~~~~~~~~l~~~~l~  471 (488)
T KOG2325|consen  436 ARVVGPIFSTAIFTLS----------GPRPVWIILLCLLLVVAALW  471 (488)
T ss_pred             hhhhhHHHHhhhHHhc----------CccHHHHHHHHHHHHHHHHH
Confidence            9999999999999988          88888888777666665444

>PRK11462 putative transporter; Provisional

Probab=99.81  E-value=1.3e-16  Score=149.57  Aligned_cols=331  Identities=15%  Similarity=0.043  Sum_probs=201.9

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh----cCCchhH-HHHHHHHHHHHHHHhhhhh------HHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKPVI-IMGTASVVIFNTLFGLSVN------FWM   71 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grk~~l-~~~~~~~~~~~~~~~~~~~------~~~   71 (420)
                      +.+|+++..      +|.+..+.-+--++.-|+.|.++||    +||||.. +++.+..+++..++...|+      +..
T Consensus        38 ~~~Gl~~~~------~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y  111 (460)
T PRK11462         38 DIFGIPAGF------VGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIY  111 (460)
T ss_pred             HhhCCCHHH------HHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            456777777      9999999999999999999999995    7986655 4566777777766654442      344


Q ss_pred             HHHHHHHhhhhccchhhh-Hhhhhhhch-hhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccc
Q 014682           72 AVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY  149 (420)
Q Consensus        72 l~~~r~l~G~~~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~  149 (420)
                      +.+.-++..++....... .++.+|..+ +|||++..++...+.++|..+++.+...+.+       .+|.+. - ..+|
T Consensus       112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~-------~~g~~~-~-~~g~  182 (460)
T PRK11462        112 AAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVN-------LIGGDN-K-PLGF  182 (460)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCCc-h-hhhH
Confidence            555666667776665544 888889887 7899999999999999999888888766554       222110 0 2244


Q ss_pred             hHHHHHHHHHHHHHHHH-HHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHH
Q 014682          150 FLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVF  228 (420)
Q Consensus       150 ~~~~~~~~~~~~~~~~~-~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (420)
                      +....+.++++++.... ....+|.++.++    ++.                  +.++..+..++||.++......++.
T Consensus       183 ~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~----~~~------------------~~~~~l~~~~~Nk~~~~l~~~~~~~  240 (460)
T PRK11462        183 QGGIAVLSVVAFMMLAFCFFTTKERVEAPP----TTT------------------SMREDLRDIWQNDQWRIVGLLTIFN  240 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcceeccCCCc----cCC------------------CHHHHHHHHhCChHHHHHHHHHHHH
Confidence            54444555544443333 333444322110    000                  0112356778898887776555555


Q ss_pred             HhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 014682          229 SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYI  308 (420)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (420)
                      ............+|....     .+. +...+.+.....+..+++.. +.+++.||+++|+....+.....+....+.+.
T Consensus       241 ~~~~~~~~~~~~y~~~y~-----~g~-~~~~~~~l~~~~i~~iig~~-l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~  313 (460)
T PRK11462        241 ILAVCVRGGAMMYYVTWI-----LGT-PEVFVAFLTTYCVGNLIGSA-LAKPLTDWKCKVTIFWWTNALLAVISLAMFFV  313 (460)
T ss_pred             HHHHHHHHhHhhhhhhhh-----cCC-hHHHHHHHHHHHHHHHHHHH-HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence            444444444444443332     332 23344556666777777765 77888888888877665444333322222222


Q ss_pred             HHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-------cchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhh
Q 014682          309 AMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQ  381 (420)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  381 (420)
                      +.  . .... .....++.+++.....+..+++.+|..+       .+..|...+..+....+|.++++.+.|.+.+..+
T Consensus       314 ~~--~-~~~~-~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G  389 (460)
T PRK11462        314 PM--Q-ASIT-MFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG  389 (460)
T ss_pred             ch--h-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            21  1 1111 1122222334444555555667776554       3344666677778899999999999999998753

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.80  E-value=1.2e-16  Score=142.98  Aligned_cols=375  Identities=14%  Similarity=0.084  Sum_probs=225.1

Q ss_pred             ccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhc-CCchhHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHhhh
Q 014682            5 FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGS   81 (420)
Q Consensus         5 ~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~   81 (420)
                      +|.++++      ..-+.++|..-.-+...++|+++||+ |+|++++.+.++..++.++.+.+.  +...+.++-.+.++
T Consensus        56 Lg~~~~~------A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~i  129 (498)
T COG3104          56 LGFDETH------ATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIV  129 (498)
T ss_pred             CCcChHh------hHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHh
Confidence            5588777      66777777776678889999999996 999999999999999999999984  78899999999999


Q ss_pred             hccchhhh-Hhhhhhhchhh--hhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISL  158 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  158 (420)
                      |.|..-|. .++++|.+|++  +|-..+++..++.|+|+.++|.+.+++.+       ..||+..|         ...++
T Consensus       130 G~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~-------~~g~~~gF---------~~aav  193 (498)
T COG3104         130 GTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI-------NYGWHVGF---------GLAAV  193 (498)
T ss_pred             ccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH-------hhCHHHHH---------HHHHH
Confidence            99999997 99999999854  47788999999999999999999999998       55555444         45555


Q ss_pred             HHHHHHHHHHhcccccCCCCCCC----Ccccchh-----------Hhh--hhhhhhh--h--------------hhhcCC
Q 014682          159 FAFGVTIAAFWLPETLHRHNDDD----DSCDVSY-----------DAL--ESASAEV--K--------------EEEGRE  205 (420)
Q Consensus       159 ~~~~~~~~~~~l~e~~~~~~~~~----~~~~~~~-----------~~~--~~~~~~~--~--------------~~~~~~  205 (420)
                      -....++.....+..-.....++    .......           ...  .....+.  .              .+.-..
T Consensus       194 Gm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~  273 (498)
T COG3104         194 GMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRS  273 (498)
T ss_pred             HHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44444444443332222111111    1111100           000  0000000  0              000000


Q ss_pred             CCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 014682          206 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER--  283 (420)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--  283 (420)
                      ++...+.-|-.....+.+...++........+.+..|..+....+.+|++ ...+...+.+.+..++.+.+......+  
T Consensus       274 ~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~  352 (498)
T COG3104         274 PKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLG  352 (498)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhh
Confidence            00001100001111222222222222333334444555444333323322 223455555566666665545444444  


Q ss_pred             hhc--h--HHHHHHHHHHHHHHHHHHHHHHH--h--hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHh
Q 014682          284 ILG--P--IMVARIAGVLTIPLLTSYPYIAM--L--SGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN  355 (420)
Q Consensus       284 ~~~--~--~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  355 (420)
                      +.+  +  +.-..++..++..+.+++.....  .  .+.....+++...++.+++.....|...+.+.+..|+...+.++
T Consensus       353 ~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~m  432 (498)
T COG3104         353 RGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIM  432 (498)
T ss_pred             cCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHH
Confidence            111  1  22333455555555555444311  1  22234445566667777889999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhhhhH------HHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          356 GIAMTGMSLFKAAGPAGGGA------LFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       356 g~~~~~~~~g~~~g~~~~g~------l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      +........++.++..+.+.      .++..          .....|..++...++..+....
T Consensus       433 a~wfLt~a~~~~l~g~va~~~~~~~~~~~~~----------~~~~~F~~~g~v~i~~~~~~~~  485 (498)
T COG3104         433 AMWFLTVAAGQTLGGQVAGLTAVTDPAYTAF----------IEGRVFGTIGVVAIVIGILLLL  485 (498)
T ss_pred             HHHHHHHHHHHHhhceecccccccchhhhhh----------hhhhhHHHHHHHHHHHHHHHHH
Confidence            98888888888777777663      22222          4556777777776666555443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.73  E-value=2.7e-19  Score=168.40  Aligned_cols=368  Identities=17%  Similarity=0.198  Sum_probs=3.0

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhh-------------
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV-------------   67 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~-------------   67 (420)
                      |+++|+++.+|      .|++.+.+-++..+..++..++.+|..|-|.+-.+.++++++++++++-+             
T Consensus        29 iErRF~l~S~~------~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~  102 (539)
T PF03137_consen   29 IERRFGLSSSQ------SGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASN  102 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccc
Confidence            57899999999      99999999999999999999999998888888899999999999876620             


Q ss_pred             -------------------------------------hHHHHHHHHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHH
Q 014682           68 -------------------------------------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTV  109 (420)
Q Consensus        68 -------------------------------------~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~  109 (420)
                                                           -+..++++.++.|+|....++. .+|+-|..++++-+..+|+.
T Consensus       103 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~  182 (539)
T PF03137_consen  103 SNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGIL  182 (539)
T ss_dssp             -------------------------------------------------SSS----------------------------
T ss_pred             cccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhh
Confidence                                                 1356788899999999999998 99999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHhHhccccccCCcc-------ccccccccCccchHHHHHHHHHHHHHHHHHHhcccccCCCCCCCC
Q 014682          110 STAWGIGLIIGPALGGFLAQPAEKYPNL-------FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDD  182 (420)
Q Consensus       110 ~~~~~~g~~~g~~l~~~l~~~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~  182 (420)
                      .....+|.++|-++++.+......+...       -..+.-| -..||+-+++.+...++..+..+.+|+..+..++.++
T Consensus       183 ~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~W-vGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~  261 (539)
T PF03137_consen  183 YAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRW-VGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQE  261 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccH-HHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccc
Confidence            9999999999999999887632222111       1111222 3457777777877777766666777766554411111


Q ss_pred             cccc----hhHhhhhhhhhhh------hhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCcc
Q 014682          183 SCDV----SYDALESASAEVK------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGL  252 (420)
Q Consensus       183 ~~~~----~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (420)
                      +++.    ..+..++...+.+      +..+.-....+++++||.+....+..........++.++.|-|+...     +
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~Q-----F  336 (539)
T PF03137_consen  262 EKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQ-----F  336 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----h
Confidence            1110    0000000000110      11223345678899999999999988888888888888888777665     8


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHH---HHHH--HH--------hh-----
Q 014682          253 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTS---YPYI--AM--------LS-----  312 (420)
Q Consensus       253 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~--~~--------~~-----  312 (420)
                      +.++.+++.+.....+.....+.++++++.||++  .|.......+...+..+.   ..+.  +.        ..     
T Consensus       337 ~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~  416 (539)
T PF03137_consen  337 GLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTS  416 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccC
Confidence            9999999888877777666666778899988865  344444444433333322   1110  00        00     


Q ss_pred             -----------------------------h-hHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHH
Q 014682          313 -----------------------------G-FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM  362 (420)
Q Consensus       313 -----------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  362 (420)
                                                   . ...+..+.+..++..+.............-+.+|+++|+.+.|+...+.
T Consensus       417 ~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~  496 (539)
T PF03137_consen  417 SSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLII  496 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHH
Confidence                                         0 0112222222222223333333333444557799999999999988665


Q ss_pred             -HHHHHHhhhhhhHHHHhh
Q 014682          363 -SLFKAAGPAGGGALFSWA  380 (420)
Q Consensus       363 -~~g~~~g~~~~g~l~~~~  380 (420)
                       -+|.+-||.+.|.+.|..
T Consensus       497 rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  497 RLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             -------------------
T ss_pred             HhhcCcchHHHHhHHHhhh
Confidence             678899999999999975

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.73  E-value=3e-16  Score=138.06  Aligned_cols=332  Identities=12%  Similarity=0.053  Sum_probs=221.0

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhh------hHH--HHHHHHHHhhhhccchhhh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV------NFW--MAVLTRFLLGSLNGLLGPI   89 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~g~~~~~   89 (420)
                      .-|+.-+|.+.+....+++-|+.|++|-|...+++..+..+++.+-..+.      .++  ....+..+.+.++-.....
T Consensus        81 ~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~l  160 (480)
T KOG2563|consen   81 ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGL  160 (480)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhcc
Confidence            55888899999999999999999999999999999999999999887653      334  5556667766666555555


Q ss_pred             -HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHH-HHHHH
Q 014682           90 -KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAA  167 (420)
Q Consensus        90 -~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~  167 (420)
                       .....-|++++||..+..+-.++..+|.++|.++...+..+....+ ...|.       ....++.....+.+ ..+..
T Consensus       161 PskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~-~~~~~-------~~~~f~~~~~l~~l~l~l~~  232 (480)
T KOG2563|consen  161 PSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSE-DNSWL-------FFTLFLGVECLAALLLALVL  232 (480)
T ss_pred             ccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcc-hhHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence             5677789999999999999999999999999999988887431100 11111       11123323333333 22333


Q ss_pred             HhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcc
Q 014682          168 FWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPK  247 (420)
Q Consensus       168 ~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (420)
                      +..+|.|+..+........               +.+-.+..++.++|+++....+++........+..+.+..-+    
T Consensus       233 ~~~~~~P~tPps~s~~~~~---------------~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l----  293 (480)
T KOG2563|consen  233 FVFTKKPPTPPSASQAALQ---------------DASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLAL----  293 (480)
T ss_pred             HhcCCCCCCCCchhHhhhh---------------cCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcc----
Confidence            4444444333221111000               111345678899999999888888776555444433332111    


Q ss_pred             cCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 014682          248 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVK  327 (420)
Q Consensus       248 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (420)
                      ..  .|++...+|.......+.+++++...+.+.||+.+-|...........++...+.......  ...++++......
T Consensus       294 ~~--sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~--~~~viv~~t~~~~  369 (480)
T KOG2563|consen  294 CP--SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFL--GDSVIVFTTCGLL  369 (480)
T ss_pred             cc--ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccC--CceEehhhhHHHH
Confidence            11  4667688888888888999999885555555543445555544444444433322222222  2233455556666


Q ss_pred             HhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhh
Q 014682          328 NLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  380 (420)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  380 (420)
                      +++..+..|...-+..|..-|..-++..|+.+..+++-+.+-..+.+...+..
T Consensus       370 g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~  422 (480)
T KOG2563|consen  370 GFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDL  422 (480)
T ss_pred             HHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhcc
Confidence            77788888888888888888888999999999999999988888887777655

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.61  E-value=7.7e-14  Score=129.28  Aligned_cols=376  Identities=15%  Similarity=0.187  Sum_probs=218.5

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcC-----CchhHHHHHHHHHHHHHHHhhh----hhHHHH
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKPVIIMGTASVVIFNTLFGLS----VNFWMA   72 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rk~~l~~~~~~~~~~~~~~~~~----~~~~~l   72 (420)
                      ++++|+++.|      .....+...+... ..++.|.++|.+.     ||+-++++.++..++.+..+..    .+....
T Consensus        17 ~~~l~ls~~~------~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~   89 (433)
T PF03092_consen   17 KDDLGLSPAQ------LQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA   89 (433)
T ss_pred             HHHcCCCHHH------HHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence            5789999999      8888888888774 4578999999763     4555566777776666655553    345666


Q ss_pred             HHHHHHhhhhccchhhh-Hhhhhhhch--hhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccc
Q 014682           73 VLTRFLLGSLNGLLGPI-KAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY  149 (420)
Q Consensus        73 ~~~r~l~G~~~g~~~~~-~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~  149 (420)
                      .+.-++..+|......+ -+++.|...  +++|+...+.......+|.+++..++|.+.+       ..+.+..|     
T Consensus        90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~-------~~~~~~~f-----  157 (433)
T PF03092_consen   90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLD-------SFGPQGVF-----  157 (433)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh-------cCCCeEEe-----
Confidence            66667777787777776 888888874  3447888888889999999999999999988       45555544     


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCc--ccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHH-HHH
Q 014682          150 FLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDS--CDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSII-VYC  226 (420)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  226 (420)
                          .+.+....+..+..++++|+++..++.+..  .++..+.....       .++.....++.+++|.++...+ ..+
T Consensus       158 ----~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~i~~~~~~~~~  226 (433)
T PF03092_consen  158 ----LISAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGS-------FREQLSELWRALQQRAIWQPILFFIF  226 (433)
T ss_pred             ----hHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhhHH-------HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence                444444444433333343332221111100  00000000000       0111223456677777776666 333


Q ss_pred             HHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 014682          227 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYP  306 (420)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (420)
                      +.......... -..|..... ..+.++++...+.+..+..++.+.+......++.+ ..-|+++....++..+..+.-.
T Consensus       227 ~~~~~~~~~~a-~~fy~~~~~-~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~-~~~R~~~~~t~~~~~~~~l~~~  303 (433)
T PF03092_consen  227 FFNLPPSISSA-SSFYFQTDA-LGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSN-WSWRRIFVVTTLVSVLASLFDL  303 (433)
T ss_pred             HHHhccCCCCc-cEEEEEecc-ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHhcccE
Confidence            22222111111 011221111 11345899999988877677777776634444444 4666666655554443322211


Q ss_pred             HH-HHh---hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 014682          307 YI-AML---SGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQK  382 (420)
Q Consensus       307 ~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~  382 (420)
                      .. ...   .+.........-..+.......-.-....+.+|+.|+...|+.+++...+.++|..++..++..+.+..+.
T Consensus       304 ~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~v  383 (433)
T PF03092_consen  304 LLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGV  383 (433)
T ss_pred             EEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            11 000   00000011111222222333344445556788999999999999999999999999999999999998864


Q ss_pred             ccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          383 RLDASFLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       383 ~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      ..+.  ..+.....++..++.++...+...
T Consensus       384 t~~~--f~~l~~lili~~~~~ll~l~ll~l  411 (433)
T PF03092_consen  384 TRDD--FSNLWLLILICSVIQLLPLPLLFL  411 (433)
T ss_pred             Cccc--ccchHHHHHHHHHHHHHHHHHHHH
Confidence            3322  124555666666666665555433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.60  E-value=5.7e-15  Score=115.40  Aligned_cols=108  Identities=32%  Similarity=0.582  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhh-Hhhhhhhchhh
Q 014682           22 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE  100 (420)
Q Consensus        22 ~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~  100 (420)
                      .+.+.++..+++++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+...+. ..++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            45567888999999999999999999999999999999998888999999999999999998888887 89999999999


Q ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHhHhcc
Q 014682          101 HQALGLSTVSTAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus       101 ~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  129 (420)
                      +|++.+++.+....+|..++|.+++.+.+
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  112 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQ  112 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence            99999999999999999999999999987

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.57  E-value=8.9e-13  Score=114.35  Aligned_cols=245  Identities=16%  Similarity=0.142  Sum_probs=151.8

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL   82 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~   82 (420)
                      +++|.++.|      ++.+....+...++..++.|.++||+|||+.-+..+++.+++++ .-..++++.++++|++.|++
T Consensus        62 ~~yg~~~~q------Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGia  134 (354)
T PF05631_consen   62 ESYGFSEHQ------IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIA  134 (354)
T ss_pred             HHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHH
Confidence            568899999      99999999999999999999999999999999999999998886 44668999999999999999


Q ss_pred             ccchhhh-Hh-hhhhhch----hhhhhhHHHHHH-HHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHH
Q 014682           83 NGLLGPI-KA-YACEIFR----EEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLC  155 (420)
Q Consensus        83 ~g~~~~~-~~-~i~~~~~----~~~r~~~~~~~~-~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~  155 (420)
                      ......+ .+ ++.|.-.    ++..+..++... ..+++-.+++..++.++.+       ..+       .+...|+..
T Consensus       135 TSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~-------~~~-------~g~vaPF~~  200 (354)
T PF05631_consen  135 TSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLAD-------WFG-------FGPVAPFDA  200 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH-------HhC-------CCCcchHHH
Confidence            9988776 55 4566532    232333333333 2333344445555555554       111       122444555


Q ss_pred             HHHHHHHHHHH-HHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhh
Q 014682          156 ISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMA  234 (420)
Q Consensus       156 ~~~~~~~~~~~-~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (420)
                      .....++..+. ...-+|+..+..++++..+.                  .....+.+.+||+++..-+...++-.....
T Consensus       201 a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~------------------~~~a~~~i~~d~ril~LG~~qslFE~smy~  262 (354)
T PF05631_consen  201 AIVLLAVAAVLILKTWPENYGDTSSSSSLSGS------------------FREAWRAILSDPRILLLGLIQSLFEGSMYL  262 (354)
T ss_pred             HHHHHHHHHHHHHhcccccCCCcccccchHHH------------------HHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence            55544443333 33334543322211111111                  112346677889888777766665443332


Q ss_pred             HHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 014682          235 YSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI  293 (420)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (420)
                      +     .++..|....  +-+....|++++...+..++|+.+......++......+..
T Consensus       263 F-----VflWtPaL~~--~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~  314 (354)
T PF05631_consen  263 F-----VFLWTPALDP--DDEELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRY  314 (354)
T ss_pred             h-----eeeeeceecC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            2     2333333221  11233478999998899999988554566665444443333

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.55  E-value=3.5e-14  Score=134.07  Aligned_cols=368  Identities=16%  Similarity=0.172  Sum_probs=265.7

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhh-------------
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV-------------   67 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~-------------   67 (420)
                      |.+.|+++.++      .|++.+.+-++..+...+..+...|.-|-|.+-.++++++++++++++-+             
T Consensus       123 iErRF~i~Ss~------sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~  196 (735)
T KOG3626|consen  123 IERRFKISSSQ------SGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVI  196 (735)
T ss_pred             hhhhcCCCCCc------ceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhh
Confidence            46789999999      99999999999999999999999999999999999999999999987630             


Q ss_pred             ------h--------------------------------H-HHHHHHHHHhhhhccchhhh-HhhhhhhchhhhhhhHHH
Q 014682           68 ------N--------------------------------F-WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLS  107 (420)
Q Consensus        68 ------~--------------------------------~-~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~  107 (420)
                            +                                + ..++++.++.|+|.....+. .+|+-|...+++-+..+|
T Consensus       197 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlg  276 (735)
T KOG3626|consen  197 KQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLG  276 (735)
T ss_pred             hccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHH
Confidence                  0                                2 25677899999999999998 999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHhHhccccccC-C--ccc-cccccccCccchHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCc
Q 014682          108 TVSTAWGIGLIIGPALGGFLAQPAEKY-P--NLF-SSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDS  183 (420)
Q Consensus       108 ~~~~~~~~g~~~g~~l~~~l~~~~~~~-~--~~~-gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~  183 (420)
                      ++.....+|.++|-++++++......+ .  ... .-+.-| -..||+-+++.+.+.+...+..+++|++.+...++.+.
T Consensus       277 i~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrW-IGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~  355 (735)
T KOG3626|consen  277 ILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRW-IGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRA  355 (735)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcch-hhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchh
Confidence            999999999999999999988643222 0  011 111223 45688888899888888888888888877654332111


Q ss_pred             ccchhHhhhhh--hhhhh--hhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhH
Q 014682          184 CDVSYDALESA--SAEVK--EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMV  259 (420)
Q Consensus       184 ~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (420)
                      .+......++.  +++..  .+-++-+...+++++||.+...++...+......++.++.|=|+.+.     ++.++..+
T Consensus       356 ~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Q-----fg~sas~A  430 (735)
T KOG3626|consen  356 RDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQ-----FGISASLA  430 (735)
T ss_pred             hhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHH-----cCCCHHHH
Confidence            11000000000  00000  01122345677899999999999999999999999999999888766     89999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHHHH----------------------h-h--
Q 014682          260 GEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTSYPYIAM----------------------L-S--  312 (420)
Q Consensus       260 g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----------------------~-~--  312 (420)
                      ..+....++.....++++++++.||++  .|.......+...+.++.+.....                      . .  
T Consensus       431 n~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~  510 (735)
T KOG3626|consen  431 NILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENP  510 (735)
T ss_pred             HHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCc
Confidence            999988898888888889999999865  355555554444444443211100                      0 0  


Q ss_pred             ----------------------------------------h-------------------------------hHHHHHHH
Q 014682          313 ----------------------------------------G-------------------------------FGLAFLLN  321 (420)
Q Consensus       313 ----------------------------------------~-------------------------------~~~~~~~~  321 (420)
                                                              .                               ......++
T Consensus       511 ~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl  590 (735)
T KOG3626|consen  511 FSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFL  590 (735)
T ss_pred             hhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHH
Confidence                                                    0                               00122233


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHH-HHHHHHhhhhhhHHHHhh
Q 014682          322 CASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM-SLFKAAGPAGGGALFSWA  380 (420)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~~g~~~~g~l~~~~  380 (420)
                      +...+..+......+....++-+.+|+++|..+.|+..++. -+|.+-+|++.|++.|..
T Consensus       591 ~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~t  650 (735)
T KOG3626|consen  591 ALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDTT  650 (735)
T ss_pred             HHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhhH
Confidence            33333334444444555666677899999999999987664 788899999999999963

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.55  E-value=8.7e-14  Score=135.42  Aligned_cols=141  Identities=14%  Similarity=0.092  Sum_probs=118.1

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhh-Hhhhhhh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI   96 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~   96 (420)
                      ..+...+..++..++.++.|+++||+|||++++.+.++.+++.++.+++++...+++.+++.|++.+...+. .++++|+
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455567778999999999999999999999999999999999999999998888888899988877766676 8999999


Q ss_pred             chhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHHHHHHhcccccC
Q 014682           97 FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  175 (420)
Q Consensus        97 ~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~  175 (420)
                      +|.++|++++|+......+|.++||.+++.+.+.                 ....++++.++..++..++..++||+..
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-----------------~~~~pf~i~a~~lll~~ll~~~LPET~~  738 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-----------------TKAAPILFASAALACGGLLALKLPDTRG  738 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------hhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            9999999999999999999999999999988751                 1234455566655665566667788654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.55  E-value=1.1e-13  Score=131.65  Aligned_cols=155  Identities=15%  Similarity=0.235  Sum_probs=112.6

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL---FGLSVNFWMAVLTRFLL   79 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~   79 (420)
                      +++|.+..+      .++..+...++..++.+..|+++||+|||+++..+.++..+....   ...+++...++++|++.
T Consensus       279 ~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (490)
T PRK10642        279 HNLHYSEDH------GVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLML  352 (490)
T ss_pred             HhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            456777666      777888889999999999999999999999988877654433322   22345677888889999


Q ss_pred             hhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHH
Q 014682           80 GSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISL  158 (420)
Q Consensus        80 G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  158 (420)
                      |++.+..... ..++.|.+|++.|+++++.......++..++|.+.+++.+.       .        ..|+.+.....+
T Consensus       353 g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~-------~--------~~~~~~~~~~~~  417 (490)
T PRK10642        353 AVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES-------T--------QNLMMPAYYLMV  417 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h--------CCchHHHHHHHH
Confidence            8876665554 77888999999999999975544556677899999888761       1        123344444555


Q ss_pred             HHHHHHHHHHhcccccCCCC
Q 014682          159 FAFGVTIAAFWLPETLHRHN  178 (420)
Q Consensus       159 ~~~~~~~~~~~l~e~~~~~~  178 (420)
                      .+++.++..+++||+|++..
T Consensus       418 ~~~i~~~~~~~~pes~~~~~  437 (490)
T PRK10642        418 VAVIGLITGVTMKETANRPL  437 (490)
T ss_pred             HHHHHHHHHHHhccccCCCC
Confidence            55555566677899988754

>TIGR00889 2A0110 nucleoside transporter

Probab=99.53  E-value=1.4e-13  Score=127.80  Aligned_cols=149  Identities=13%  Similarity=0.188  Sum_probs=116.9

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhhhccchhhh-Hhh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV----NFWMAVLTRFLLGSLNGLLGPI-KAY   92 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~-~~~   92 (420)
                      .+...++..++..++.++.|+++||+|||+++..+.++.+++..+.....    +++.+++.+++.|++.+...+. ..+
T Consensus       253 ~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~  332 (418)
T TIGR00889       253 ASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVF  332 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999988877666632    3466778899999998888777 889


Q ss_pred             hhhhchhhhhhhHHHHHH-HHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHH-HHHHHHhc
Q 014682           93 ACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWL  170 (420)
Q Consensus        93 i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l  170 (420)
                      +.|++|+++|++++++.+ ...++|.++||+++|.+.+..++. ..+||+..|         ...++..++ .++..+++
T Consensus       333 i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~-~~~~~~~~f---------~~~~~~~~i~~~l~~~~~  402 (418)
T TIGR00889       333 VEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAY-GTFDWQTMW---------LFFAGYIAILAVLFMIFF  402 (418)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc-cCCchHHHH---------HHHHHHHHHHHHHHHHHh
Confidence            999999999999999997 678999999999999999832100 013454444         555554444 44556677


Q ss_pred             ccccCC
Q 014682          171 PETLHR  176 (420)
Q Consensus       171 ~e~~~~  176 (420)
                      ||+.+.
T Consensus       403 ~~~~~~  408 (418)
T TIGR00889       403 KYSHNA  408 (418)
T ss_pred             CCcccC
Confidence            776443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.51  E-value=9.7e-11  Score=104.71  Aligned_cols=341  Identities=14%  Similarity=0.088  Sum_probs=210.5

Q ss_pred             cccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhc
Q 014682            4 DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLN   83 (420)
Q Consensus         4 ~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   83 (420)
                      +.|+|++|-     ..-+.-...-.+....++...+.|..+.|++++++.+...+...+..+.++...+-+..++-|++.
T Consensus        34 ~kn~T~~qv-----~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~  108 (412)
T PF01770_consen   34 DKNFTEEQV-----NNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLAT  108 (412)
T ss_pred             ccCCCHHHH-----HHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence            367777762     234555566677788899999999999999999999999999999999999999999999999988


Q ss_pred             cchhhhHhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHH
Q 014682           84 GLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV  163 (420)
Q Consensus        84 g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~  163 (420)
                      +.-..-.+++-...|+++-.++.+...++.-+|..++..+|-.+..              ++..+++..+.+......+.
T Consensus       109 a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs--------------~~~~sy~~L~~isl~~~~~a  174 (412)
T PF01770_consen  109 AAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS--------------FGGVSYFQLNYISLASVSLA  174 (412)
T ss_pred             HHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hcCCCHHHHHHHHHHHHHHH
Confidence            8755558999999999999999999999999999999999988886              22444555555555555556


Q ss_pred             HHHHHhcccccCCC---CCCCCccc---chhHhhhhhhhh---hhhhhcCC-----------CCchhhhccchhHHHHHH
Q 014682          164 TIAAFWLPETLHRH---NDDDDSCD---VSYDALESASAE---VKEEEGRE-----------ATPKKSLLKNWPLMSSII  223 (420)
Q Consensus       164 ~~~~~~l~e~~~~~---~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  223 (420)
                      .+..+++|..++..   ++.+++.+   ...+..++..++   .+++++..           ....++..+||.++.-.+
T Consensus       175 ~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSl  254 (412)
T PF01770_consen  175 LLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSL  254 (412)
T ss_pred             HHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence            66678888766532   11111000   000000000000   00000000           123344566777766665


Q ss_pred             HHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 014682          224 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT  303 (420)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (420)
                      -+.+.........++....-.+.   ...+-+....|.+-+...+.+.++.+ ..+.+..+..+...+.++......+.+
T Consensus       255 WWa~atcgy~qv~nYvQ~LW~~v---~~~~~~~vYNG~VeA~~tllgA~~al-~~g~v~~~w~~~~~l~l~~~S~l~a~~  330 (412)
T PF01770_consen  255 WWAFATCGYYQVINYVQSLWDTV---PPSDNESVYNGAVEAASTLLGAIAAL-LAGYVKVNWDRWGELALGVFSLLQAGL  330 (412)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhc---CCCCCCcccchHHHHHHHHHHHHHHH-HHhHhhcchHHHHHHHHHHHHHHHHHH
Confidence            55555444443333332222111   11233344456666666777777766 556665555554444444333332322


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhh
Q 014682          304 SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPA  371 (420)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~  371 (420)
                      ++.. ...   ...++..+..++.........+....-++.....+.-|..+|+++.+..+-+.+-..
T Consensus       331 L~lm-~~t---~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtilT~  394 (412)
T PF01770_consen  331 LFLM-SFT---GNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQTILTL  394 (412)
T ss_pred             HHHH-HHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHheEE
Confidence            2222 111   122334444444445556667777777777788899999999988777666554443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK10054 putative transporter; Provisional

Probab=99.50  E-value=4.5e-12  Score=117.07  Aligned_cols=173  Identities=12%  Similarity=0.101  Sum_probs=130.3

Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 014682          216 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  295 (420)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (420)
                      |.++...+..++..........+++.|+.+.     +|++..++|...+...+...+.++ ..+++.||+++|+.+..+.
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~-----~g~s~~~~g~~~s~~~~~~~~~~~-~~G~l~Dr~g~k~~~~~~~   80 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQ-----YSLSVDLIGYAMTIALTIGVVFSL-GFGILADKFDKKRYMLLAI   80 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCcchhHHHHH
Confidence            3456666666766666666677788777655     899999999999999999998887 6778888899999988888


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhH
Q 014682          296 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  375 (420)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~  375 (420)
                      ....++.+.+.+.++     .+. ......+.+.......+.......|..|+++|+++.|+.+...++|..++|.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~-----~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~  154 (395)
T PRK10054         81 TAFASGFIAIPLVNN-----VTL-VVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTL  154 (395)
T ss_pred             HHHHHHHHHHHHHhH-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777776666555432     111 11222223334445567788888999999999999999999999999999999998


Q ss_pred             HHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014682          376 LFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       376 l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~  411 (420)
                      +.+ .          +|+..|.+.+++.+++.++..
T Consensus       155 l~~-~----------g~~~~f~~~~~~~~i~~i~~~  179 (395)
T PRK10054        155 LVM-Q----------SINLPFWLAAICSAFPLVFIQ  179 (395)
T ss_pred             HHH-h----------ccCcHHHHHHHHHHHHHHHHH
Confidence            875 4          688899988877777655443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.45  E-value=2.4e-11  Score=108.08  Aligned_cols=176  Identities=18%  Similarity=0.163  Sum_probs=147.1

Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 014682          217 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  296 (420)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (420)
                      .++...++.+......+.....+|...++      +|.+..++|...+.++.+..++.+ ....+.+|++||+++.....
T Consensus        14 ~l~aLa~~~F~igttEfv~~gLLp~iA~d------l~vs~~~aG~lis~yAl~~ai~ap-~l~~lt~r~~Rr~lLl~~l~   86 (394)
T COG2814          14 ALLALALAAFAIGTTEFVPVGLLPPIAAD------LGVSEGAAGQLITAYALGVALGAP-LLALLTGRLERRRLLLGLLA   86 (394)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhchHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHcccchHHHHHHHHH
Confidence            44555666666666666666666655544      799999999999999999999999 55566677799999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHH
Q 014682          297 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL  376 (420)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l  376 (420)
                      +..++.++..+.++.      ..+.+.=++.+...+.+.+.......+++||++|+++.++..+-..++..+|.+++.++
T Consensus        87 lFi~~n~l~alAp~f------~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~i  160 (394)
T COG2814          87 LFIVSNLLSALAPSF------AVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFL  160 (394)
T ss_pred             HHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHH
Confidence            999988887776542      24556666677778889999999999999999999999999999999999999999999


Q ss_pred             HHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhh
Q 014682          377 FSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLA  416 (420)
Q Consensus       377 ~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  416 (420)
                      -|..          |||..|+..+.+.++..+..+. ..|
T Consensus       161 g~~~----------GWR~~F~~ia~l~ll~~~~~~~-~lP  189 (394)
T COG2814         161 GQLF----------GWRATFLAIAVLALLALLLLWK-LLP  189 (394)
T ss_pred             HHHh----------hHHHHHHHHHHHHHHHHHHHHH-hCC
Confidence            9999          9999999999999999888877 666

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.45  E-value=4.1e-13  Score=125.36  Aligned_cols=141  Identities=18%  Similarity=0.140  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhh-Hhhhhhh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI   96 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~   96 (420)
                      .|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+. ..++.|.
T Consensus       264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  343 (420)
T PRK09528        264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLN  343 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999888999999999999999999988777665 8899999


Q ss_pred             chhhhhhhHHHH-HHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHH-HHHHHhccccc
Q 014682           97 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETL  174 (420)
Q Consensus        97 ~~~~~r~~~~~~-~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~e~~  174 (420)
                      +|++.|++..+. .+....+|.+++|.+.|++.+       .+||+..|         ...++..++. ++..+.+++++
T Consensus       344 ~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~-------~~G~~~~f---------~~~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        344 FDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD-------SIGFQGTY---------LILGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             cCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH-------hhCchHHH---------HHHHHHHHHHHHHHHHHhcCCc
Confidence            999999887665 677888999999999999998       55555444         5555544443 33344444433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.45  E-value=9.5e-13  Score=121.67  Aligned_cols=148  Identities=15%  Similarity=0.210  Sum_probs=116.5

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      ++++|.++.+      .+++.+...++..++.++.|+++||+|||+.+..+.....+.......+++.+.+++.+++.++
T Consensus       244 ~~~~~~~~~~------~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  317 (393)
T PRK15011        244 INELHLPEKL------AGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAI  317 (393)
T ss_pred             HHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3567888878      8888888888888899999999999999998887776666555555567788888889999888


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.|...+. ..+..|..|+ +|++++++.+...++|..++|.+++.+.+       .+||+         ..+....+..
T Consensus       318 ~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~-------~~g~~---------~~~~~~~~~~  380 (393)
T PRK15011        318 YIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAE-------IWNYH---------AVFWFALVMI  380 (393)
T ss_pred             HHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhH---------HHHHHHHHHH
Confidence            77776665 7778888875 59999999999999999999999999998       44444         4445666666


Q ss_pred             HHHHHHHHhccc
Q 014682          161 FGVTIAAFWLPE  172 (420)
Q Consensus       161 ~~~~~~~~~l~e  172 (420)
                      ++..+..++.||
T Consensus       381 ~~~~~~~~~~~~  392 (393)
T PRK15011        381 IATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHhhcC
Confidence            666666666664

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.44  E-value=2e-12  Score=119.92  Aligned_cols=140  Identities=21%  Similarity=0.182  Sum_probs=115.2

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhh-Hhhhhhh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI   96 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~   96 (420)
                      .++..+.+.++..++.++.|++.||+|||+.+..+..+..++.++..+.++.+.+++.+++.|++.+...+. ...+.|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~  330 (399)
T PRK05122        251 AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKR  330 (399)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            566677888899999999999999999999999998888888888888888888888999999998887776 7778899


Q ss_pred             chhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHHHHHHhcccc
Q 014682           97 FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET  173 (420)
Q Consensus        97 ~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~  173 (420)
                      .|+++|+++.++++....+|..++|++.+.+.+       ..||+         ..+...++..++..+..+.++++
T Consensus       331 ~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-------~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        331 VPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS-------WFGYP---------SIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCHH---------HHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999987       44444         44455555555555444555443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.44  E-value=2.3e-11  Score=112.57  Aligned_cols=170  Identities=14%  Similarity=0.045  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 014682          220 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTI  299 (420)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (420)
                      ......++............+.|+.+.     .|+++.+.|...+...+.....++ ..+.+.||+++|+.+..+.....
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~gl~~~~~~l~~~~~~~-~~G~l~dr~g~k~~l~~~~~~~~   87 (400)
T PRK11646         14 FLLIDNMLVVLGFFVVFPLISIRFVDQ-----LGWAAVMVGIALGLRQFIQQGLGI-FGGAIADRFGAKPMIVTGMLMRA   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCcHHHHHHHHHHHHHHHHHHHh-hhhHHHHHhCchHHHHHHHHHHH
Confidence            334445555555555556666666544     799999999999998888888877 67888888999999999988888


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHh
Q 014682          300 PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW  379 (420)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  379 (420)
                      ++.+.....++     .+ .+.+...+.+.......|...+.+.+..|+++|+++.|+.+...++|..+||.+.|.+. .
T Consensus        88 ~~~~~~~~~~~-----~~-~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~  160 (400)
T PRK11646         88 AGFATMAIAHE-----PW-LLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-Q  160 (400)
T ss_pred             HHHHHHHHhcc-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            87776654321     12 23333444455555667888888999999999999999999999999999999999998 4


Q ss_pred             hhhccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          380 AQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       380 ~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      .          +|+..|++.+.+.++..++...
T Consensus       161 ~----------g~~~~f~~~~~~~~~~~i~~~~  183 (400)
T PRK11646        161 Y----------DFRLVCATGAVLFVLAAAFNAW  183 (400)
T ss_pred             h----------hHHHHHHHHHHHHHHHHHHHHH
Confidence            4          7999999888777766554433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.44  E-value=1.5e-12  Score=121.39  Aligned_cols=151  Identities=19%  Similarity=0.138  Sum_probs=122.7

Q ss_pred             cccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhc
Q 014682            4 DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLN   83 (420)
Q Consensus         4 ~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   83 (420)
                      .+|.++.+      .|++.+...++..++.++.+++.||.++|+.+..+..+..++.++..+.++.+.+.++.++.|++.
T Consensus       253 ~~g~~~~~------~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  326 (417)
T PRK10489        253 VWQMGAAQ------IGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLS  326 (417)
T ss_pred             ccCCChhH------hHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence            37778778      999999999999999999999999988888888888888888888888888888888899999988


Q ss_pred             cchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHH-
Q 014682           84 GLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAF-  161 (420)
Q Consensus        84 g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~-  161 (420)
                      +...+. .+++.|..|+++|++++++......+|..+||.+.|.+.+       ..|.+         ..+...+...+ 
T Consensus       327 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~-------~~g~~---------~~~~~~~~~~~~  390 (417)
T PRK10489        327 AISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA-------MMTPV---------ASASASGFGLLI  390 (417)
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH-------Hhchh---------hHHHHHHHHHHH
Confidence            877776 7899999999999999999999999999999999999998       33333         33344443333 


Q ss_pred             HHHHHHHhcccccCC
Q 014682          162 GVTIAAFWLPETLHR  176 (420)
Q Consensus       162 ~~~~~~~~l~e~~~~  176 (420)
                      +..+....+||.++.
T Consensus       391 ~~~~~~~~~~~~~~~  405 (417)
T PRK10489        391 IGVLLLLVLGELRRF  405 (417)
T ss_pred             HHHHHHHhccccccc
Confidence            344555666766543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.42  E-value=9.3e-12  Score=116.60  Aligned_cols=167  Identities=13%  Similarity=0.041  Sum_probs=122.1

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 014682          221 SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  300 (420)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (420)
                      ..+.+++.......+....|.+..      ++|++..+.+.+.+...++..++++ ..+++.||+|+|+.+..+.++..+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~------~~g~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~g~r~~~~~~~~~~~~  100 (434)
T PRK11663         28 MYLGYALFYFTRKSFNAAMPEMLA------DLGLSRSDIGLLATLFYITYGVSKF-VSGIVSDRSNARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHhhhhHHHhhHHHHH------hcCCCHHHHHHHHHHHHHHHHHHHh-hhhHHHhhcCCchhHHHHHHHHHH
Confidence            333344333333344444554443      3799999999999999999999988 778888889999999888888877


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhh
Q 014682          301 LLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  380 (420)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  380 (420)
                      +.+......+.     + .+....++.++......+....++++.+|+++|++++|+.+....+|..++|.+.+.+.+..
T Consensus       101 ~~~~~~~~~~~-----~-~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~  174 (434)
T PRK11663        101 INILFGFSSSL-----W-AFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY  174 (434)
T ss_pred             HHHHHHHHhHH-----H-HHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            77666554321     1 12222233334444556777888999999999999999999999999999999999999876


Q ss_pred             hhccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 014682          381 QKRLDASFLPGSQMVFFVLNVVEAIGVLMT  410 (420)
Q Consensus       381 ~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~  410 (420)
                                +|+..|.+.+++.++..++.
T Consensus       175 ----------gw~~~f~~~~i~~~~~~~~~  194 (434)
T PRK11663        175 ----------GWRYGMMIAGIIAIVVGLFL  194 (434)
T ss_pred             ----------cHHHHHHHHHHHHHHHHHHH
Confidence                      89999998887766554433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.42  E-value=3e-11  Score=110.59  Aligned_cols=171  Identities=16%  Similarity=0.157  Sum_probs=129.2

Q ss_pred             HHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 014682          223 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL  302 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (420)
                      ...++............|.|..+      .+.++.+.+...+...++..++++ ..+++.||+|||+.+..+..+..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~------~~~s~~~~g~~~~~~~~~~~i~~~-~~G~l~dr~g~r~~~~~~~~~~~~~~   78 (365)
T TIGR00900         6 AAQLISLIGTAITQVALPLYVLA------GTGSASVLSLAALAGMLPYVVLSP-IAGALADRYDRKKVMIGADLIRAVLV   78 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------hhccHHHHHHHHHHHHHHHHHHHH-hhhHHHHhhchhHHHHHHHHHHHHHH
Confidence            34444444445555566666543      578899999999999999999987 67788888999999998888777666


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 014682          303 TSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQK  382 (420)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~  382 (420)
                      ........... .....+.+...+.+.......+...++..|..|+++|+++.|..+....+|..++|.+.+.+.+..  
T Consensus        79 ~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~--  155 (365)
T TIGR00900        79 AVLPFVALLGG-LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL--  155 (365)
T ss_pred             HHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            66555432111 122234444555566777788889999999999999999999999999999999999999999887  


Q ss_pred             ccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014682          383 RLDASFLPGSQMVFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       383 ~~~~~~~~g~~~~f~~~~~~~~~~~~~~~  411 (420)
                              +|+..|++.++..+++.+...
T Consensus       156 --------g~~~~~~~~~~~~~~~~~~~~  176 (365)
T TIGR00900       156 --------GIKWAIWVDAVGFAISALLIV  176 (365)
T ss_pred             --------hHHHHHHHHHHHHHHHHHHHH
Confidence                    899999888776666655443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.42  E-value=2.8e-12  Score=116.69  Aligned_cols=141  Identities=23%  Similarity=0.308  Sum_probs=123.4

Q ss_pred             ccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCch-hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhc
Q 014682            5 FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP-VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLN   83 (420)
Q Consensus         5 ~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   83 (420)
                      +|.++.+      .++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++.+.+.+..++.|++.
T Consensus       206 ~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~  279 (352)
T cd06174         206 LGLSAAE------AGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGL  279 (352)
T ss_pred             cCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            4677777      999999999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             cchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHH
Q 014682           84 GLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG  162 (420)
Q Consensus        84 g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~  162 (420)
                      +...+. ..++.|..|+|+|++.+++.+...++|..++|.+.+.+.+       ..+|+         ..+...++..++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~-------~~~~~---------~~~~~~~~~~~i  343 (352)
T cd06174         280 GFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD-------TGGYG---------GVFLILAALALL  343 (352)
T ss_pred             hccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccCcc---------hHHHHHHHHHHH
Confidence            988887 9999999999999999999999999999999999999998       34444         334566665555


Q ss_pred             HHHHH
Q 014682          163 VTIAA  167 (420)
Q Consensus       163 ~~~~~  167 (420)
                      ..+..
T Consensus       344 ~~i~~  348 (352)
T cd06174         344 AALLL  348 (352)
T ss_pred             HHHHh
Confidence            44433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.39  E-value=5e-12  Score=117.64  Aligned_cols=121  Identities=21%  Similarity=0.281  Sum_probs=107.0

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL   82 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~   82 (420)
                      ++.|.++.+      .+.+.+...++..++.++.|+++||+|||+.+..+.+...++.+.....++.+.+.+.-++.|++
T Consensus       248 ~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  321 (406)
T PRK11551        248 VGQGLSRSQ------AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF  321 (406)
T ss_pred             HhCCCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            456778888      89999999999999999999999999999999888777777777777778888888888888887


Q ss_pred             ccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhcc
Q 014682           83 NGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        83 ~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  129 (420)
                      .+...+. .+++.|.+|+++|+++.++.+....+|..+||.+++.+.+
T Consensus       322 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  369 (406)
T PRK11551        322 VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA  369 (406)
T ss_pred             HHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence            6666666 8899999999999999999999999999999999999987

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.39  E-value=4.1e-12  Score=116.86  Aligned_cols=147  Identities=15%  Similarity=0.274  Sum_probs=116.4

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL   82 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~   82 (420)
                      +++|.++.+      .+++.+.......++.++.|++.||+|||+++..+.++..+........++.+.+.+.+++.|++
T Consensus       228 ~~~g~~~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  301 (375)
T TIGR00899       228 HELGLPDKL------AGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIF  301 (375)
T ss_pred             HHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788877      88888888777888899999999999999999888777766666666778888888889999998


Q ss_pred             ccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHH
Q 014682           83 NGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAF  161 (420)
Q Consensus        83 ~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~  161 (420)
                      .+...+. ..++.|..|+ +|++++++.+...++|..++|.+++.+.+       ..||+         ..+...++..+
T Consensus       302 ~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~-------~~g~~---------~~~~~~~~~~~  364 (375)
T TIGR00899       302 IGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE-------RWSYH---------AVYWFAIVMLI  364 (375)
T ss_pred             HHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------hccch---------hHHHHHHHHHH
Confidence            8877776 7888898875 56799999999999999999999999988       44444         33456666555


Q ss_pred             HHHHHHHhccc
Q 014682          162 GVTIAAFWLPE  172 (420)
Q Consensus       162 ~~~~~~~~l~e  172 (420)
                      +..+...+++|
T Consensus       365 ~~~~~~~~~~~  375 (375)
T TIGR00899       365 VALFCLLLIKD  375 (375)
T ss_pred             HHHHHHheecC
Confidence            55555555543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.39  E-value=1e-10  Score=108.12  Aligned_cols=146  Identities=16%  Similarity=0.084  Sum_probs=117.5

Q ss_pred             CccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 014682          250 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  329 (420)
Q Consensus       250 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (420)
                      +++|.++.+.+...+...+...++++ ..+.+.||+|||+.+..+..+..++.+.....++      ...+.+.-++.+.
T Consensus        48 ~~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~  120 (394)
T PRK10213         48 QDLGISEGVAGQSVTVTAFVAMFASL-FITQTIQATDRRYVVILFAVLLTLSCLLVSFANS------FSLLLIGRACLGL  120 (394)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHCh------HHHHHHHHHHHHH
Confidence            34799999999999999999999888 5567888899999999999888877666544321      2223344455566


Q ss_pred             hhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHH
Q 014682          330 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  409 (420)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~  409 (420)
                      ......+....++.|.+|+++|+++.++.....+++..++|.+.+.+.+..          +|+..|++.+.+.++..+.
T Consensus       121 ~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~----------gw~~~f~~~~~l~~~~~l~  190 (394)
T PRK10213        121 ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI----------GWRNVFNAAAVMGVLCIFW  190 (394)
T ss_pred             hhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CHHHHHHHHHHHHHHHHHH
Confidence            667778888999999999999999999999999999999999999999887          8999999988777665544


Q ss_pred             Hhh
Q 014682          410 TFK  412 (420)
Q Consensus       410 ~~~  412 (420)
                      ...
T Consensus       191 ~~~  193 (394)
T PRK10213        191 IIK  193 (394)
T ss_pred             HHH
Confidence            433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.39  E-value=7.6e-11  Score=109.02  Aligned_cols=146  Identities=16%  Similarity=0.097  Sum_probs=117.2

Q ss_pred             CccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 014682          250 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  329 (420)
Q Consensus       250 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (420)
                      +++|.++.+.+...+...+...++++ ..+.+.||+|||+.+..+..+..++.+...+.++      ...+.+..+..+.
T Consensus        37 ~~~~~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~~~G~  109 (390)
T PRK03545         37 QSFHMQTAQVGLMLTIYAWVVALMSL-PLMLLTSNVERRKLLIGLFVLFIASHVLSALAWN------FTVLLISRIGIAF  109 (390)
T ss_pred             hHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHH
Confidence            44899999999999998888888887 4568888999999999998888777766655432      1123333344455


Q ss_pred             hhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHH
Q 014682          330 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  409 (420)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~  409 (420)
                      ......+...++..+..|+++|+++.|+......+|..++|.+.+.+.+..          ||+..|++.+++.++..+.
T Consensus       110 ~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~----------gw~~~f~~~~~~~~l~~~~  179 (390)
T PRK03545        110 AHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL----------GWRTTFLAIGGGALITLLL  179 (390)
T ss_pred             HHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh----------cHHHHHHHHHHHHHHHHHH
Confidence            556667888889999999999999999999999999999999999999887          8999999998887777655


Q ss_pred             Hhh
Q 014682          410 TFK  412 (420)
Q Consensus       410 ~~~  412 (420)
                      .+.
T Consensus       180 ~~~  182 (390)
T PRK03545        180 LIK  182 (390)
T ss_pred             HHH
Confidence            544

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.38  E-value=5.6e-11  Score=109.52  Aligned_cols=178  Identities=10%  Similarity=0.096  Sum_probs=132.2

Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 014682          216 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  295 (420)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (420)
                      +.++......+.............|.+..      ++|.+..+.+...+...++..++++ ..+++.||+|||+.+..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~   75 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAH------DVGISIPAAGHMISYYALGVVVGAP-IIALFSSRYSLKHILLFLV   75 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHH------HcCCCHHHHhHHHHHHHHHHHHHHH-HHHHHHccCccHHHHHHHH
Confidence            34455555555555554555555554432      3799999999999999999999988 7777888889999999998


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhH
Q 014682          296 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  375 (420)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~  375 (420)
                      .+..++.+.....++      ...+.+..++.+.......+.......+..|+++|+++.+.......++..++|.+.+.
T Consensus        76 ~~~~~~~~l~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~  149 (382)
T PRK10091         76 ALCVIGNAMFTLSSS------YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTY  149 (382)
T ss_pred             HHHHHHHHHHHHhCc------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence            888877776655432      12233444555555566667777888898999999999999999999999999999999


Q ss_pred             HHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhc
Q 014682          376 LFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ  417 (420)
Q Consensus       376 l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  417 (420)
                      +.+..          +|+..|.+.+.+.++..+..+. ..||
T Consensus       150 l~~~~----------gwr~~f~~~~~~~~~~~~~~~~-~lp~  180 (382)
T PRK10091        150 LSQEF----------SWRYTFLLIAVFNIAVLASIYF-WVPD  180 (382)
T ss_pred             Hhhhc----------cHHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence            98876          8999999988877766655444 4444

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.38  E-value=8.1e-11  Score=109.39  Aligned_cols=157  Identities=17%  Similarity=0.120  Sum_probs=119.4

Q ss_pred             CCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 014682          249 LGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKN  328 (420)
Q Consensus       249 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (420)
                      .+++|++..+.+...+...++..++++ ..+++.||+|||+.+..+.++..++.....+.++      ...+.+.-++.+
T Consensus        35 ~~~~~~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G  107 (412)
T TIGR02332        35 GKDLGLSATMFGLAATLFYAAYVICGI-PSNIMLAIIGARRWIAGIMVLWGIASTATMFATG------PESLYLLRILVG  107 (412)
T ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC------HHHHHHHHHHHH
Confidence            344899999999999999999999988 5678888899999998888887777776655432      122334445556


Q ss_pred             hhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHH
Q 014682          329 LLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVL  408 (420)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~  408 (420)
                      ++.....|....+.+|.+|+++|+++.|+.+....+|..+++.+.+.+.+..... .   ..||+..|.+.++..++..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-~---~~gwr~~f~~~~~~~l~~~~  183 (412)
T TIGR02332       108 IAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM-A---LKGWQWLFLLEGFPSVILGV  183 (412)
T ss_pred             HHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-C---ccchhHHHHHHHHHHHHHHH
Confidence            6667777888888999999999999999999999999999999999887531100 0   02899999998887776655


Q ss_pred             HHhhhhhhc
Q 014682          409 MTFKPFLAQ  417 (420)
Q Consensus       409 ~~~~~~~~~  417 (420)
                      +.++ ..||
T Consensus       184 ~~~~-~~~~  191 (412)
T TIGR02332       184 MTWF-WLDD  191 (412)
T ss_pred             HHhh-ccCC
Confidence            5544 3443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.38  E-value=3.3e-12  Score=122.07  Aligned_cols=121  Identities=20%  Similarity=0.234  Sum_probs=97.2

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNFWMAVLTRFLLG   80 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G   80 (420)
                      +++|.+..+      .+++.+...++..++.++.|+++||+|||+++..+..+..+..+.....  .+.+.+.+..++.+
T Consensus       304 ~~~g~~~~~------~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (496)
T PRK03893        304 TDLGYDPHT------VANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQ  377 (496)
T ss_pred             hhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            577888888      9999999999999999999999999999999988877766665544332  34444545555555


Q ss_pred             hhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhcc
Q 014682           81 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        81 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  129 (420)
                      .......+. ..++.|.+|+++|++++++......+|..+||.+++.+.+
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~  427 (496)
T PRK03893        378 MLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ  427 (496)
T ss_pred             HHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence            433233344 7889999999999999999999999999999999999998

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.38  E-value=5.6e-11  Score=109.77  Aligned_cols=145  Identities=16%  Similarity=0.094  Sum_probs=118.1

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 014682          251 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL  330 (420)
Q Consensus       251 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (420)
                      ++|.++.+.+...+...++..++++ ..+++.||+|||+.+..+..+..++.+.....++      ...+.+..++.+.+
T Consensus        34 ~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~  106 (385)
T TIGR00710        34 DLSTPASIVQMTLTLYLLGFAAGQL-LWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN------IETLLVLRFVQAFG  106 (385)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHH-hhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc------HHHHHHHHHHHHcc
Confidence            3799999999999999999999987 6778888899999999888877777666554322      22233445555666


Q ss_pred             hHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 014682          331 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  410 (420)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~  410 (420)
                      .....+....+..|.+|+++|+++.|+.+....++..++|.+.+.+.+..          +|+..|++.+.+.++..+..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~  176 (385)
T TIGR00710       107 ASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL----------SWHAIFAFLSLAGILLSALI  176 (385)
T ss_pred             hhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHH
Confidence            77778888899999999999999999999999999999999999999877          89999998888777766655


Q ss_pred             hh
Q 014682          411 FK  412 (420)
Q Consensus       411 ~~  412 (420)
                      +.
T Consensus       177 ~~  178 (385)
T TIGR00710       177 FF  178 (385)
T ss_pred             HH
Confidence            44

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.38  E-value=5.3e-11  Score=108.40  Aligned_cols=162  Identities=20%  Similarity=0.196  Sum_probs=126.1

Q ss_pred             HHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 014682          226 CVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSY  305 (420)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (420)
                      ++............|.+..+.     +|.++.+.+.+.+...+...++++ ..+++.||+|||+.+..+..+..++.+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~l~~~~~~~~~~~~~~   79 (352)
T PF07690_consen    6 FLSGFGFSIISPALPLYLAEE-----LGLSPSQIGLLFSAFFLGSALFSP-FAGYLSDRFGRRRVLIIGLLLFALGSLLL   79 (352)
T ss_dssp             HHHHHHHHHHHHHHH-HHHCC-----STTTSHCHHHHHHHHHHHHHHHHH-HHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence            333333344444555333333     789999999999999999999988 66778888899999999888888874443


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccC
Q 014682          306 PYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLD  385 (420)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~  385 (420)
                      .+.     ...+ .+....++.+.+.....+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..     
T Consensus        80 ~~~-----~~~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-----  148 (352)
T PF07690_consen   80 AFA-----SNFW-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF-----  148 (352)
T ss_dssp             HHH-----CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC-----
T ss_pred             hhh-----hhHH-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc-----
Confidence            322     1223 45566667777778889999999999999999999999999999999999999999999777     


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHH
Q 014682          386 ASFLPGSQMVFFVLNVVEAIGVLM  409 (420)
Q Consensus       386 ~~~~~g~~~~f~~~~~~~~~~~~~  409 (420)
                           +|+..|++.+++.++..++
T Consensus       149 -----~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  149 -----GWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             -----HHCCHHHHHHHHHHHHHHH
T ss_pred             -----ccccccccccchhhhhhhh
Confidence                 7999999999999888775

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.38  E-value=1.6e-10  Score=109.39  Aligned_cols=154  Identities=14%  Similarity=0.103  Sum_probs=106.1

Q ss_pred             CccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 014682          250 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  329 (420)
Q Consensus       250 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (420)
                      +++|++..+.+...+...++..++++ +.+++.||+|+|+.+..+.+...++.++..+..+.     + .+.+..++.++
T Consensus        64 ~~~gls~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~-----~-~l~~~r~l~G~  136 (476)
T PLN00028         64 DNLNLTKSDIGNAGIASVSGSIFSRL-AMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSA-----T-GFIAVRFFIGF  136 (476)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCH-----H-HHHHHHHHHHH
Confidence            34799999999988887788888777 77888899999998888777776666555443221     1 12222333333


Q ss_pred             hhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHH
Q 014682          330 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  409 (420)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~  409 (420)
                      +..... .....+++.+|+++||++.|+.+...++|..+++.+.+.+.+...+.... ...||+..|++.+++.++..+.
T Consensus       137 ~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~-~~~gWr~~f~i~g~l~l~~~l~  214 (476)
T PLN00028        137 SLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAP-SFTAWRIAFFVPGLLHIIMGIL  214 (476)
T ss_pred             HHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chhhhHHHHHHHHHHHHHHHHH
Confidence            333333 34456789999999999999999888899988888877665543221000 0027999999998888776655


Q ss_pred             Hhh
Q 014682          410 TFK  412 (420)
Q Consensus       410 ~~~  412 (420)
                      .+.
T Consensus       215 ~~~  217 (476)
T PLN00028        215 VLT  217 (476)
T ss_pred             HHH
Confidence            544

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.37  E-value=7.6e-11  Score=109.81  Aligned_cols=176  Identities=11%  Similarity=0.024  Sum_probs=127.7

Q ss_pred             chhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHH
Q 014682          215 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARI  293 (420)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  293 (420)
                      ++.++..........+.......+.|.|+.+.     +|+++.+++.+.........++.+ .++++.||+ |||+.+..
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~-----lgls~~~a~~i~~~~~~~~~l~~l-igG~LaDRilGrrr~ili   81 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQ-----LKYDDNHAYELFSAYCSLVYVTPI-LGGFLADKVLGNRMAVML   81 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccCcHHHHHH
Confidence            44555555555555666667777888888765     799999999999988888788766 889999998 99999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcc--hhhHHhhHHHHHHHHHHHHhhh
Q 014682          294 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD--QRGAANGIAMTGMSLFKAAGPA  371 (420)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~~g~~  371 (420)
                      +.++..++.+++.....  . ...  ..........+.+...+...++.+|.+|++  +|.++.++.+...++|+.++|.
T Consensus        82 G~il~~lg~lll~~~~~--~-~~~--~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~  156 (493)
T PRK15462         82 GALLMAIGHVVLGASEI--H-PSF--LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPI  156 (493)
T ss_pred             HHHHHHHHHHHHHHhhc--c-hhH--HHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHH
Confidence            98888877655432111  0 011  111111111223344566778899999875  7999999999999999999999


Q ss_pred             hhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014682          372 GGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       372 ~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~  411 (420)
                      +.|++.+..          ||+..|.+.++..+++.+...
T Consensus       157 l~g~L~~~~----------Gw~~~F~iaaigm~l~li~~~  186 (493)
T PRK15462        157 ACGYAQEEY----------SWAMGFGLAAVGMIAGLVIFL  186 (493)
T ss_pred             HHHHHHhhh----------ChHHHHHHHHHHHHHHHHHHH
Confidence            999999877          899999987766665554443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.37  E-value=7.9e-12  Score=116.41  Aligned_cols=132  Identities=18%  Similarity=0.210  Sum_probs=111.4

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhh-Hhhhhhh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI   96 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~   96 (420)
                      .+.+.++..++..++.+..|+++||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...|. ..++.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            566677778888899999999999999999999998888888887778888888999999999999888887 8888899


Q ss_pred             chhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHHH
Q 014682           97 FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI  165 (420)
Q Consensus        97 ~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~  165 (420)
                      .|+++|++.+++.+....+|..+||.+++.+.+       ..||+.         .+...++..++..+
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~-------~~g~~~---------~f~~~~~~~l~~~~  392 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA-------NYGFRA---------VFLVTAGVVLFNAV  392 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHHHHHh-------hcchhH---------HHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988       444444         44566555555443

>PRK10504 putative transporter; Provisional

Probab=99.36  E-value=1.1e-10  Score=110.89  Aligned_cols=173  Identities=19%  Similarity=0.085  Sum_probs=131.4

Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 014682          217 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  296 (420)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (420)
                      .++...+..++............|.+..+      +|.++.+.+...+...++..++.+ ..+++.||+|||+....+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~r~~~~~~~~   83 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQS------LGESPLHMHMVIVSYVLTVAVMLP-ASGWLADRVGVRNIFFTAIV   83 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHH------hCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhchHHHHHHHHH
Confidence            45555666666555555666667766543      789999999998888888788876 78889999999999888777


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHH
Q 014682          297 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL  376 (420)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l  376 (420)
                      +..++.+......   +   ...+.+...+.+++.....+.......|.+|+++|+++.|+.+....+|..++|.+.|.+
T Consensus        84 ~~~~~~~~~~~~~---~---~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l  157 (471)
T PRK10504         84 LFTLGSLFCALSG---T---LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLL  157 (471)
T ss_pred             HHHHHHHHHHHhC---C---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            7666655543321   1   122334455556666777888888899999999999999999999999999999999999


Q ss_pred             HHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          377 FSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       377 ~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      .+..          +|+..|.+...+..++.+....
T Consensus       158 ~~~~----------gw~~~f~~~~~~~~l~~~~~~~  183 (471)
T PRK10504        158 VEYA----------SWHWIFLINIPVGIIGAIATLM  183 (471)
T ss_pred             Hhhc----------cHHHHHHHHHHHHHHHHHHHHH
Confidence            9876          8999999988777766655544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.36  E-value=8.9e-11  Score=111.46  Aligned_cols=180  Identities=10%  Similarity=-0.041  Sum_probs=128.0

Q ss_pred             Cchhhhccchh-HHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 014682          207 TPKKSLLKNWP-LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-  284 (420)
Q Consensus       207 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-  284 (420)
                      .-..+.+|+|+ ++......++..+.......+.+.|+.+.     +|++..+++..............+ .++++.|| 
T Consensus        11 ~~~~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-----lg~s~~~a~~~~~~~~~~~~~~~~-~~G~LaDr~   84 (500)
T PRK09584         11 SVSLNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQ-----LGMSEADSITLFSSFSALVYGLVA-IGGWLGDKV   84 (500)
T ss_pred             CCChhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence            34455667764 67666666777777777777888888665     789988887777665544444433 78999999 


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcch--hhHHhhHHHHHH
Q 014682          285 LGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQ--RGAANGIAMTGM  362 (420)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~  362 (420)
                      +|||+.+..+..+..++.....+....     ...+.....+.+.+.+...+...++..+.+|+++  +..+.++.+...
T Consensus        85 ~G~r~~~~~g~~~~~ig~~l~~~~~~~-----~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~  159 (500)
T PRK09584         85 LGTKRVIMLGAIVLAIGYALVAWSGHD-----AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSI  159 (500)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhccc-----HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHH
Confidence            599999999988888776665543211     1112222333444555566777788899887543  456888889999


Q ss_pred             HHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHH
Q 014682          363 SLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGV  407 (420)
Q Consensus       363 ~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~  407 (420)
                      ++|..++|.+.|++.+..          ||+..|.+.++..+++.
T Consensus       160 ~iG~~~gp~i~g~l~~~~----------g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        160 NIGSFFSMLATPWLAAKY----------GWSVAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHHHHHHHhh----------CHHHHHHHHHHHHHHHH
Confidence            999999999999999987          89999998876555544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.36  E-value=1.2e-12  Score=123.04  Aligned_cols=121  Identities=18%  Similarity=0.200  Sum_probs=101.7

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhc--CCchhHHH--HHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVIIM--GTASVVIFNTLFGLSVNFWMAVLTRFL   78 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grk~~l~~--~~~~~~~~~~~~~~~~~~~~l~~~r~l   78 (420)
                      +++|.+..+      .+++.++..++..+++++.|+++||.  ++|+...+  +.+..+++.++....++++.+++.+++
T Consensus       269 ~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~  342 (455)
T TIGR00892       269 KDKGVDEYE------AAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIF  342 (455)
T ss_pred             HHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            456777778      99999999999999999999999984  33433333  344445555666778899999999999


Q ss_pred             hhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhcc
Q 014682           79 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        79 ~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  129 (420)
                      .|++.+...+. .+++.|.+|++++++.+++.+...++|.++||.++|.+.+
T Consensus       343 ~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  394 (455)
T TIGR00892       343 FGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD  394 (455)
T ss_pred             HHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence            99998888877 8999999999999999999999999999999999999987

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.36  E-value=5.7e-12  Score=115.90  Aligned_cols=121  Identities=13%  Similarity=0.041  Sum_probs=105.2

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHhh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF--WMAVLTRFLLG   80 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G   80 (420)
                      +++|.++++      .+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.+...+.++.  ..+....++.|
T Consensus       233 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  306 (377)
T TIGR00890       233 QSLGLSDGF------LVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF  306 (377)
T ss_pred             HHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence            456777777      8999999999999999999999999999999999999888888877776643  33456678888


Q ss_pred             hhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhcc
Q 014682           81 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        81 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  129 (420)
                      ++.+...+. ..++.|.+|+++|+++.++.+....+|..++|.+.+.+.+
T Consensus       307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  356 (377)
T TIGR00890       307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT  356 (377)
T ss_pred             HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            887777666 8899999999999999999999999999999999999988

>PRK12382 putative transporter; Provisional

Probab=99.35  E-value=1.7e-10  Score=106.86  Aligned_cols=176  Identities=16%  Similarity=0.082  Sum_probs=121.9

Q ss_pred             chhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 014682          215 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  294 (420)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (420)
                      ++.++...+..++............|.+..+.     +|.|..+.|...+...+...+.++ ..+++.||+|||+.+..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~-----lg~s~~~~g~~~s~~~~~~~i~~~-~~G~l~Dr~g~r~~l~~~   87 (392)
T PRK12382         14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHD-----LGFGNTMVGIAVGIQFLATVLTRG-YAGRLADQYGAKRSALQG   87 (392)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHh-----cCCcHHHHHHHHHHHHHHHHHHhh-hhhHHHHhhcchHHHHHH
Confidence            44455555554444444444444555555443     799999999999999999999988 778888889999998888


Q ss_pred             HHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhh
Q 014682          295 GVLTIPLLTSYPYIAMLS--GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG  372 (420)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~  372 (420)
                      .+...++.+.+.......  .......+.+.-.+.+.+.....+...+...+..|+++|++++|........+..++|.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~  167 (392)
T PRK12382         88 MLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPL  167 (392)
T ss_pred             HHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHH
Confidence            776655443322211100  011223344445555556666677777888899999999999999999899999999999


Q ss_pred             hhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHH
Q 014682          373 GGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIG  406 (420)
Q Consensus       373 ~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~  406 (420)
                      .+.+.+..          ||+..+.+.....++.
T Consensus       168 ~~~l~~~~----------g~~~~~~~~~~~~~~~  191 (392)
T PRK12382        168 GLLLHSHF----------GFAALALTTMVLPLLA  191 (392)
T ss_pred             HHHHHhcc----------ChHHHHHHHHHHHHHH
Confidence            99998876          7887766555444333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.33  E-value=1.2e-10  Score=109.90  Aligned_cols=175  Identities=11%  Similarity=0.064  Sum_probs=131.9

Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHH
Q 014682          216 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPIMVARIA  294 (420)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  294 (420)
                      +.++......++..+.......+++.|+.+.   .++|++..+++...+...+...++++ .++++.|| +|||+.+..+
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~---~~lg~s~~~ag~~~~~~~~~~~~~~~-~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQ---AGLGFSQEQAFIIFGAYSALVYLLTS-VGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHHHHHHHHHHHHHHHHHh-hHHHHHHhhcchHHHHHHH
Confidence            3445555555665667677777888887542   13689999999999999999999988 77888887 8999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcch---hhHHhhHHHHHHHHHHHHhhh
Q 014682          295 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQ---RGAANGIAMTGMSLFKAAGPA  371 (420)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~g~~~g~~  371 (420)
                      ..+..++.+.+.....      ...+.....+.+.+.+...+...++.++.+|+++   |+++.++.+...++|..+||.
T Consensus        86 ~~~~~~g~~~~~~~~~------~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~  159 (475)
T TIGR00924        86 GIVLMLGHFMLAMSIY------PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPL  159 (475)
T ss_pred             HHHHHHHHHHHHhccc------HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHH
Confidence            9988888776655321      1112223333445555667788888888888654   888999999999999999999


Q ss_pred             hhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 014682          372 GGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  410 (420)
Q Consensus       372 ~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~  410 (420)
                      +.+.+.+..          +|+..|.+.++..+++.+..
T Consensus       160 l~g~l~~~~----------g~~~~f~~~~~~~~~~~l~~  188 (475)
T TIGR00924       160 LAGVIAENY----------GYHVGFNLAAVGMVIGLLTF  188 (475)
T ss_pred             HHHHHHHhc----------ChHHHHHHHHHHHHHHHHHH
Confidence            999999887          89999998876666554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.33  E-value=2.3e-11  Score=112.05  Aligned_cols=120  Identities=13%  Similarity=0.088  Sum_probs=112.0

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL   82 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~   82 (420)
                      +|+|.++++      .|++.+...++..+..++.+++.||+|+|+.+.++.+...+.....+++++++.+++.++++|+.
T Consensus       233 ~~~g~s~~~------~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~  306 (382)
T TIGR00902       233 QAAGISASA------TGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGT  306 (382)
T ss_pred             HHCCCCHhH------HHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence            467888888      99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhh-HhhhhhhchhhhhhhHHHHHH-HHhHHHHHHHHHHHhHhcc
Q 014682           83 NGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        83 ~g~~~~~-~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~l~~  129 (420)
                      .+...+. ..++.+. |+++|++..++++ ...++|.++||.++|.+.+
T Consensus       307 ~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~  354 (382)
T TIGR00902       307 FAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP  354 (382)
T ss_pred             HHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998887 8899988 9999999999986 5788999999999999998

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.32  E-value=2.7e-10  Score=108.56  Aligned_cols=171  Identities=16%  Similarity=0.096  Sum_probs=125.3

Q ss_pred             HHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 014682          223 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL  302 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (420)
                      +..++...-........|....      ++|.+..+.++..+.+.++.....+ ..+++.||+|||+.+..+..+..++.
T Consensus        13 ~~~~~~~ld~tiv~~a~p~i~~------~l~~s~~~~~~~~~~~~l~~~~~~~-~~G~l~D~~Grk~~l~~~~~~~~~~~   85 (495)
T PRK14995         13 LVYIPVAIDATVLHVAAPTLSM------TLGASGNELLWIIDIYSLVMAGMVL-PMGALGDRIGFKRLLMLGGTLFGLAS   85 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH------HhCCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            3334433333444444554433      3788899999999998888888876 67888889999999999998888887


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC-CcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhh
Q 014682          303 TSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV-DQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQ  381 (420)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  381 (420)
                      +.....++      ...+++.-.+.+.+.....+.......+.+ |+++|+++.|+......+|..+||.++|.+.+.. 
T Consensus        86 ~~~~~a~~------~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~-  158 (495)
T PRK14995         86 LAAAFSPT------ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF-  158 (495)
T ss_pred             HHHHHcCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-
Confidence            77665432      222334444555566667776666665554 7899999999999999999999999999999987 


Q ss_pred             hccCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhc
Q 014682          382 KRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ  417 (420)
Q Consensus       382 ~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  417 (420)
                               +|++.|++...+.++..++..+ ..|+
T Consensus       159 ---------gwr~~f~i~~~~~~~~~~l~~~-~l~~  184 (495)
T PRK14995        159 ---------YWGSVFLINVPIVLVVMGLTAR-YVPR  184 (495)
T ss_pred             ---------ChHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence                     8999999988777776666555 3443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.31  E-value=1.4e-10  Score=110.69  Aligned_cols=144  Identities=17%  Similarity=0.069  Sum_probs=118.0

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  331 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (420)
                      +|.++.+.+...+...++..++.+ ..+++.||+|||+.+..+..+..++.+.....++      ...+.+..++.+++.
T Consensus        32 ~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~G~~~  104 (485)
T TIGR00711        32 LGSSLSQVQWVITSYMLANAISIP-LTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPN------LELMIIFRVIQGFGG  104 (485)
T ss_pred             cCCChhhhhHHHHHHHHHHHHHHH-hHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHhhh
Confidence            788999999999999999999877 7788889999999999988888777766654322      223444555666677


Q ss_pred             HHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014682          332 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~  411 (420)
                      ....+....++.|.+|+++|+++.++......+|..++|.+.|.+.+..          +|+..|++.+.+.++..++..
T Consensus       105 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------~w~~~f~~~~~~~~~~~~~~~  174 (485)
T TIGR00711       105 GPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY----------HWRWIFLINVPIGIIVVVVAF  174 (485)
T ss_pred             hhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc----------CceehhhhhhHHHHHHHHHHH
Confidence            7788889999999999999999999999999999999999999998876          899999988777766655554


Q ss_pred             h
Q 014682          412 K  412 (420)
Q Consensus       412 ~  412 (420)
                      .
T Consensus       175 ~  175 (485)
T TIGR00711       175 F  175 (485)
T ss_pred             H
Confidence            4

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.31  E-value=3.8e-10  Score=104.46  Aligned_cols=145  Identities=12%  Similarity=0.075  Sum_probs=113.4

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 014682          251 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL  330 (420)
Q Consensus       251 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (420)
                      ++|.+..+.+...+...++..++++ ..+++.||+|||+.+..+.....++.......++      ...+....++.+..
T Consensus        32 ~~~~s~~~~~~~~~~~~~~~~~~~~-~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~l~g~~  104 (392)
T PRK10473         32 DLNASEAQLHIAFSVYLAGMAAAML-FAGKIADRSGRKPVAIPGAALFIIASLLCSLAET------SSLFLAGRFLQGIG  104 (392)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHH-hHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCc------HHHHHHHHHHHHhh
Confidence            3789999999999998888888877 7788888899999998888777777666544321      11222333444555


Q ss_pred             hHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 014682          331 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  410 (420)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~  410 (420)
                      .....+....+..|.+|+++|+++.+..+....++..++|.+.+.+.+..          +|+..|++.+++.++..++.
T Consensus       105 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~----------g~~~~~~~~~~~~~i~~~~~  174 (392)
T PRK10473        105 AGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF----------PWQSLFYTMAAMGILVLLLS  174 (392)
T ss_pred             hhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----------ChHHHHHHHHHHHHHHHHHH
Confidence            56667778889999999999999999999999999999999998888766          89999999888777776655


Q ss_pred             hh
Q 014682          411 FK  412 (420)
Q Consensus       411 ~~  412 (420)
                      ..
T Consensus       175 ~~  176 (392)
T PRK10473        175 LF  176 (392)
T ss_pred             HH
Confidence            44

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.30  E-value=2.7e-08  Score=90.87  Aligned_cols=326  Identities=14%  Similarity=0.104  Sum_probs=180.8

Q ss_pred             HHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhh------h--h-----h--HHHHHHHHHHhhhhccchh
Q 014682           23 SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL------S--V-----N--FWMAVLTRFLLGSLNGLLG   87 (420)
Q Consensus        23 s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~------~--~-----~--~~~l~~~r~l~G~~~g~~~   87 (420)
                      -.-.+..++.++..|.+.||..|+++...+.+..-++..+...      .  +     +  ...+++.-.+.|..+-...
T Consensus        45 l~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las  124 (432)
T PF06963_consen   45 LVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLAS  124 (432)
T ss_pred             HHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            3345566788888999999999999877665544333222211      1  1     1  1122222222222222222


Q ss_pred             hh--Hhhhhhhc------hhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHH
Q 014682           88 PI--KAYACEIF------REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF  159 (420)
Q Consensus        88 ~~--~~~i~~~~------~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  159 (420)
                      .+  .+.=.||.      +++++.+.++.+.-.--+..+++|++.|.+.+                ..+......+.+..
T Consensus       125 ~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t----------------~~s~~~~~~~i~~~  188 (432)
T PF06963_consen  125 IANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMT----------------FASPVIAAIFIAGW  188 (432)
T ss_pred             hhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------ccCHHHHHHHHHHH
Confidence            21  22223442      45667788888888888999999999999987                22333333334444


Q ss_pred             HHHHHHH-HH-------hcccccCCCCCCCCcccchhH------hhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHH
Q 014682          160 AFGVTIA-AF-------WLPETLHRHNDDDDSCDVSYD------ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVY  225 (420)
Q Consensus       160 ~~~~~~~-~~-------~l~e~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (420)
                      .++.... .+       ..|+-..++++++++.++..+      ......+..++.-++....++..++++.+...... 
T Consensus       189 N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~al-  267 (432)
T PF06963_consen  189 NLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFAL-  267 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHH-
Confidence            4332221 11       122222111111111111100      00000001111112224556777777765544443 


Q ss_pred             HHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 014682          226 CVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSY  305 (420)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (420)
                      .+..+...++......|+..      .|+++..+|..-....+.++.+.. ..+++.+|+|..+.-..+......++...
T Consensus       268 alLY~TVLsf~~lmt~yl~~------~G~s~~~igi~R~~gav~Gl~gT~-~~p~l~~riGlvr~G~~~l~~q~~~L~~~  340 (432)
T PF06963_consen  268 ALLYFTVLSFGGLMTAYLKS------QGYSPSVIGIFRGLGAVFGLLGTW-VYPWLMKRIGLVRAGLWSLWWQWVCLALC  340 (432)
T ss_pred             HHHHHHHhcCcHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence            33344456667777778766      499999999999998899999877 89999999998887777766544333222


Q ss_pred             H---HHHHhh-hhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhh
Q 014682          306 P---YIAMLS-GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG  372 (420)
Q Consensus       306 ~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~  372 (420)
                      .   +.+..+ .......++.....-=.+.-++-.....+++|.+|+++||+..|+-+..+++...+.-.+
T Consensus       341 v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  341 VVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             HHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            1   222111 112222222222222233344455667788899999999999999999998877655443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00895 2A0115 benzoate transport

Probab=99.30  E-value=1.2e-10  Score=107.93  Aligned_cols=144  Identities=16%  Similarity=0.122  Sum_probs=113.3

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 014682          251 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL  330 (420)
Q Consensus       251 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (420)
                      ++|.++.+.+.+.+...++..++++ ..+++.||++||+.+..+..+..++.+......+      ...+.+..++.+++
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~  118 (398)
T TIGR00895        46 EWGLDPVQLGFLFSAGLIGMAFGAL-FFGPLADRIGRKRVLLWSILLFSVFTLLCALATN------VTQLLILRFLAGLG  118 (398)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHH-HhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccc------hHHHHHHHHHHhcc
Confidence            3789999999999998888888887 7778888889999998888777776665544321      22233444555566


Q ss_pred             hHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 014682          331 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  410 (420)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~  410 (420)
                      .....+...++..|.+|+++|+++.++.+....+|..++|.+.+.+.+..          +|+..|++.+.+.++..++.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----------g~~~~~~~~~~~~~~~~~~~  188 (398)
T TIGR00895       119 LGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF----------GWRSLFYVGGIAPLLLLLLL  188 (398)
T ss_pred             cccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc----------cceeehhhhhhHHHHHHHHH
Confidence            66778888999999999999999999999999999999999999998876          78888888765555554444


Q ss_pred             h
Q 014682          411 F  411 (420)
Q Consensus       411 ~  411 (420)
                      .
T Consensus       189 ~  189 (398)
T TIGR00895       189 M  189 (398)
T ss_pred             H
Confidence            3

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.30  E-value=6.4e-11  Score=109.10  Aligned_cols=118  Identities=20%  Similarity=0.276  Sum_probs=97.2

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL   82 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~   82 (420)
                      ++.|.++++      .++..+...++..+++++.|++.||+|||+++..+.....++.+...  + .......+++.|++
T Consensus       228 ~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~  298 (381)
T PRK03633        228 NHQGMSDAS------IGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAA  298 (381)
T ss_pred             HHcCCCHHH------HHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHH
Confidence            345677777      89999999999999999999999999999999888888777665443  2 23344567778887


Q ss_pred             ccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhcc
Q 014682           83 NGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        83 ~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  129 (420)
                      .....|. .+.+.|..|+++++...+......++|..+||.++|++.+
T Consensus       299 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~  346 (381)
T PRK03633        299 GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ  346 (381)
T ss_pred             HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666776 8888999998888888888888999999999999999998

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.28  E-value=6.2e-11  Score=104.34  Aligned_cols=152  Identities=14%  Similarity=0.098  Sum_probs=128.0

Q ss_pred             CCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 014682          249 LGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKN  328 (420)
Q Consensus       249 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (420)
                      .++.++|..+.|.+.+...+.--++.. +.+.++||.++|+.+..++++.++..+++.+.++      ...+.+...+-+
T Consensus        56 ~e~~~lsk~~lG~i~s~f~i~YG~sKf-~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s------~~~~~~l~~lng  128 (448)
T COG2271          56 IEDGGLSKTQLGILGSAFSITYGVSKF-VMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPS------LFLFAVLWVLNG  128 (448)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHH-HhhhhcccCCCceeehHHHHHHHHHHHHHhhhhH------HHHHHHHHHHHH
Confidence            334679999999999999999999987 8889999999999999999999999988887653      223445555556


Q ss_pred             hhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhh--hHHHHhhhhccCCCCCCCchHHHHHHHHHHHHH
Q 014682          329 LLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGG--GALFSWAQKRLDASFLPGSQMVFFVLNVVEAIG  406 (420)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~--g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~  406 (420)
                      .+.+.-.|.....+.+-+|+++||+..++-|+..++|+.+.|.+.  +.+.++.          +|+..|++-++++++.
T Consensus       129 ~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~----------~w~~~f~~pgiiaiiv  198 (448)
T COG2271         129 WFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG----------GWRAAFYFPGIIAIIV  198 (448)
T ss_pred             HHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc----------chhHHHHHHHHHHHHH
Confidence            677777788888888889999999999999999999999999999  8888776          8999999999999888


Q ss_pred             HHHHhhhhhhcc
Q 014682          407 VLMTFKPFLAQR  418 (420)
Q Consensus       407 ~~~~~~~~~~~~  418 (420)
                      .++.++ ..|++
T Consensus       199 al~~~~-~~rd~  209 (448)
T COG2271         199 ALILLF-LLRDR  209 (448)
T ss_pred             HHHHHH-HhCCC
Confidence            887776 55544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.28  E-value=3.1e-11  Score=114.26  Aligned_cols=122  Identities=20%  Similarity=0.225  Sum_probs=95.4

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL--FGLSVNFWMAVLTRFLL   79 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~--~~~~~~~~~l~~~r~l~   79 (420)
                      ++++|.|..+      .++..+...++..++.+.+|+++||+|||+.+.....+..++...  ....++.+.+.+.+++.
T Consensus       286 ~~~~g~s~~~------a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (467)
T PRK09556        286 FQELGFSKED------AINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFAL  359 (467)
T ss_pred             HHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4568888888      899999999999999999999999999998876655444433322  22345666777888888


Q ss_pred             hhhc-cchhhhHhhhhhhchhhhhhhHHHHHHHHhHH-HHHHHHHHHhHhcc
Q 014682           80 GSLN-GLLGPIKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGFLAQ  129 (420)
Q Consensus        80 G~~~-g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~l~~~l~~  129 (420)
                      |++. +...+......|.+|+++|+++.|+.+...++ |..++|.+.|.+.+
T Consensus       360 G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        360 GFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            8643 33333346677999999999999999988886 77999999999987

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.28  E-value=6.4e-10  Score=102.73  Aligned_cols=166  Identities=11%  Similarity=-0.025  Sum_probs=120.8

Q ss_pred             chhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 014682          215 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  294 (420)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (420)
                      +|+++...+..++..+.........+.+..      +++.++.+.+...+...+...+.++ ..+++.||++||+++..+
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~s~~~~~~~~~~~~l~~~l~~~-~~G~laDr~grr~vl~~~   74 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIALLK------ELHYPDWSQPLLQMFFVLAYIVLAP-FVGAFADSFPKGRVMFIA   74 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH------HcCCcHHHHHHHHHHHHHHHHHHHh-hhhHhhhccCCchhhHHH
Confidence            455666666666555443333333333322      2677888899999998888888877 788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhh
Q 014682          295 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG  374 (420)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g  374 (420)
                      ..+..++.+.......     .    ...-++.+.+.....|...+++.|.+|+++|+++.|+.+....++..+||.++|
T Consensus        75 ~~~~~~~~~~~~~~~~-----~----~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG  145 (393)
T PRK11195         75 NGIKLLGCLLMLFGIH-----P----LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGG  145 (393)
T ss_pred             HHHHHHHHHHHHHHHH-----H----HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887776655433221     1    122344566778889999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhccCCCCCCCchHHHHHHHHHHHHHH
Q 014682          375 ALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGV  407 (420)
Q Consensus       375 ~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~  407 (420)
                      .+.+..           +...+.+.+...+++.
T Consensus       146 ~l~~~~-----------~~~~~~i~~~~~~~~~  167 (393)
T PRK11195        146 ALADPH-----------AEAALAVCALIYLLAA  167 (393)
T ss_pred             HHHHHH-----------HHHHHHHHHHHHHHHH
Confidence            999853           5556666555544443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.27  E-value=8.2e-10  Score=101.26  Aligned_cols=177  Identities=12%  Similarity=0.012  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 014682          218 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  297 (420)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (420)
                      ++...+.++........+..+.|.+..+.     +|+++.+.+...+...++..++++ ..+++.||+|||+.+..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~   76 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDD-----LGLSTAQLGNLVAVPVLAGAVLRI-ILGFLVDKFGPRYTTTLSLLL   76 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHH-----hCCCHHHhhHhhHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHH
Confidence            44444555554555455555555444333     899999999999999999999988 777888889999999999888


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHH
Q 014682          298 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF  377 (420)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  377 (420)
                      ..++.+...+...     ....+.+..++.+.... ..+....++.+.+|+++|+++.++.....++|..+++.+.+.+.
T Consensus        77 ~~i~~~~~~~~~~-----~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  150 (366)
T TIGR00886        77 LAIPCLWAGLAVQ-----SYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII  150 (366)
T ss_pred             HHHHHHHHHHHhh-----hHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            8887776655431     11122233333444433 34556778889999999999999999899999999998888877


Q ss_pred             HhhhhccCCCCCCCchHHH-HHHHHHHHHH
Q 014682          378 SWAQKRLDASFLPGSQMVF-FVLNVVEAIG  406 (420)
Q Consensus       378 ~~~~~~~~~~~~~g~~~~f-~~~~~~~~~~  406 (420)
                      +...+..+.....+|+..| ...+.+..+.
T Consensus       151 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  180 (366)
T TIGR00886       151 GSLIFGAGLPAHLAWGWAFVIVPAGILLLP  180 (366)
T ss_pred             HHHHhcccccccccccchhHHHHHHHHHHH
Confidence            6543221110112688888 4334444333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.27  E-value=4.7e-10  Score=105.99  Aligned_cols=172  Identities=8%  Similarity=-0.045  Sum_probs=128.9

Q ss_pred             chhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHH
Q 014682          215 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPIMVARI  293 (420)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  293 (420)
                      .|.++......+...+........++.|+.+.     +|++..+++..............+ .++++.|| +|||+.+..
T Consensus        13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~-----lg~~~~~a~~i~~~~~~~~~~~~~-~~G~laDr~~G~r~~~~~   86 (489)
T PRK10207         13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQ-----LGFSQEQAFITFGAFAALVYGLIS-IGGYVGDHLLGTKRTIVL   86 (489)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHh-hHHHhhhhccchHHHHHH
Confidence            34556666666666666677777788887765     789999988888777766666655 78999998 999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcc--hhhHHhhHHHHHHHHHHHHhhh
Q 014682          294 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD--QRGAANGIAMTGMSLFKAAGPA  371 (420)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~~g~~  371 (420)
                      +.++..++.+.........     ..+.+...+.+.+.+...|...+++.|.+|++  +|++++++.....++|..+||.
T Consensus        87 g~~~~~~g~~~~~~~~~~~-----~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~  161 (489)
T PRK10207         87 GAIVLAIGYFMTGMSLLKP-----DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLS  161 (489)
T ss_pred             HHHHHHHHHHHHHHhccch-----hHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHH
Confidence            9999988877766543211     11222333344566667788889999999877  4588999999999999999999


Q ss_pred             hhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHH
Q 014682          372 GGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGV  407 (420)
Q Consensus       372 ~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~  407 (420)
                      +.|++.++.          ||+..|++.++..+++.
T Consensus       162 l~g~l~~~~----------gw~~~F~i~~i~~~~~~  187 (489)
T PRK10207        162 LAPVIADKF----------GYSVTYNLCGAGLIIAL  187 (489)
T ss_pred             HHHHHHHhh----------ChHHHHHHHHHHHHHHH
Confidence            999999987          89999988765444443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.27  E-value=9.1e-10  Score=103.98  Aligned_cols=184  Identities=18%  Similarity=0.184  Sum_probs=142.6

Q ss_pred             hhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 014682          210 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  289 (420)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (420)
                      ...+|||.|....+...+.+........-.+.+..+      ..-|+...+++.....+..++.++ .++.+.||++||+
T Consensus         4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~------lt~S~~~valv~~a~~LP~~Llsl-~aG~laDr~drrr   76 (524)
T PF05977_consen    4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQ------LTGSPLMVALVQAASTLPILLLSL-FAGALADRFDRRR   76 (524)
T ss_pred             cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCHHHHHHHHHHHHHHHHHHHH-HHHHHhhcccchH
Confidence            345889999988888888777766666555544432      456788889998888888888877 7888889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHh
Q 014682          290 VARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG  369 (420)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g  369 (420)
                      ++...-++..+..+.+........ ...+.+++..++.+.+.....|..++.+.+++|+++...+.++.+...++...+|
T Consensus        77 ili~~~~~~~~~~~~L~~l~~~~~-~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iG  155 (524)
T PF05977_consen   77 ILILSQLLRALVALLLAVLAFFGL-LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIG  155 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhcc
Confidence            999888777665555444333222 2233455666777788888999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014682          370 PAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       370 ~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~  411 (420)
                      |.++|.++...          |....|.+.++..++......
T Consensus       156 PalgG~Lva~~----------G~~~~f~inalsfl~~i~~l~  187 (524)
T PF05977_consen  156 PALGGILVAFF----------GAAAAFLINALSFLISILALL  187 (524)
T ss_pred             chHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988          778888887776666544433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.27  E-value=4.7e-10  Score=104.30  Aligned_cols=149  Identities=13%  Similarity=0.109  Sum_probs=114.2

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 014682          251 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL  330 (420)
Q Consensus       251 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (420)
                      +++.+..+.+...+...++..++++ ..+.+.||+|||+.+..+..+..++.+.....++      ...+.+.-++.+.+
T Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~~~~-~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~------~~~l~~~r~l~Gi~  117 (413)
T PRK15403         45 DFNADVSLAPASVSLYLAGGMALQW-LLGPLSDRIGRRPVLITGALIFTLACAATLFTTS------MTQFLIARFIQGTS  117 (413)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHH-hhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHH
Confidence            4788999999999999999999988 7788999999999999888777776665544322      11233333444444


Q ss_pred             hHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 014682          331 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  410 (420)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~  410 (420)
                      .....+.......|.+|+++++++.++.+....++..+||.+++.+.+..          +|+..|++.+++.+++.+..
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~----------gw~~~f~~~~~~~~i~~~~~  187 (413)
T PRK15403        118 ICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV----------HWKVLFAIIAVMGLIAFVGL  187 (413)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CHHHHHHHHHHHHHHHHHHH
Confidence            44445556677888899999999999999999999999999999998876          89999999988877776654


Q ss_pred             hhhhhhc
Q 014682          411 FKPFLAQ  417 (420)
Q Consensus       411 ~~~~~~~  417 (420)
                      +. ..||
T Consensus       188 ~~-~lp~  193 (413)
T PRK15403        188 LL-AMPE  193 (413)
T ss_pred             HH-hCCC
Confidence            43 3444

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.26  E-value=1e-09  Score=102.06  Aligned_cols=143  Identities=10%  Similarity=0.025  Sum_probs=112.2

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 014682          251 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL  330 (420)
Q Consensus       251 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (420)
                      ++|.++.+.+...+...++..++++ ..+++.||+|||+.+..+..+..++.+...+.++      ...+....++.+.+
T Consensus        41 ~~~~s~~~~g~~~~~~~~~~~~~~~-~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~l~G~~  113 (405)
T TIGR00891        41 EFGLTTVDAASLISAALISRWFGAL-MFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPG------YITMFIARLVIGIG  113 (405)
T ss_pred             HhCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHhh
Confidence            3799999999999999999999988 7788888899999999888777777666554332      22233445555566


Q ss_pred             hHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHH
Q 014682          331 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVL  408 (420)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~  408 (420)
                      .....+....+..|..|+++|+++.++.+....+|..+++.+.+.+.+..+        .+|+..|.+.+...++..+
T Consensus       114 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~--------~~w~~~f~~~~~~~~~~~~  183 (405)
T TIGR00891       114 MGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG--------DGWRALFFISILPIIFALW  183 (405)
T ss_pred             hhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------ccHHHHHHHHHHHHHHHHH
Confidence            667778888899999999999999999999999999999999999887651        1488888876655555433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.26  E-value=4.4e-10  Score=103.48  Aligned_cols=144  Identities=15%  Similarity=0.138  Sum_probs=116.9

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  331 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (420)
                      +|.++.+.+...+...++..++++ ..+.+.||+|||+.+..+..+..++.......++      ...+.+..++.+++.
T Consensus        21 ~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~l~g~~~   93 (377)
T PRK11102         21 FGVSAGSVQMTLSAYILGFAIGQL-FYGPMADSFGRKPVILGGTLVFALAAVACALAQT------IDQLIYMRFLHGLAA   93 (377)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHH-hhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc------HHHHHHHHHHHHHHH
Confidence            789999999999999999999887 6778888889999999988888777776655332      112334445555666


Q ss_pred             HHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014682          332 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~  411 (420)
                      ....+....+..|..|+++|+++.++.+....+|..++|.+.+.+.+..          +|+..|++.+.+.++..++..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         94 AAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF----------SWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------ChHHHHHHHHHHHHHHHHHHH
Confidence            6777888889999999999999999999999999999999999999877          899999988887777665554


Q ss_pred             h
Q 014682          412 K  412 (420)
Q Consensus       412 ~  412 (420)
                      .
T Consensus       164 ~  164 (377)
T PRK11102        164 F  164 (377)
T ss_pred             H
Confidence            4

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.26  E-value=5.6e-10  Score=101.75  Aligned_cols=147  Identities=12%  Similarity=0.039  Sum_probs=106.9

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  331 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (420)
                      +|.++.+.|...+...++..++++ ..+++.||+|||+++.........+.... .. .    .....+.+.-++.+.+.
T Consensus        21 ~~~s~~~~g~~~s~~~~g~~i~~~-~~G~l~Dr~grr~~~~~~~~~~~~~~~~~-~~-~----~~~~~l~~~R~l~G~g~   93 (368)
T TIGR00903        21 IDVSKEELGLLAITYPAAFLALTI-PSGLLLDRAFKRWFLFGSLATFAAAAGRL-LD-P----FNYEWLLACQLLAALGQ   93 (368)
T ss_pred             hCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccchHHHHHHHHHHHHHHHHH-HH-h----ccHHHHHHHHHHHHhHh
Confidence            789999999999999999999988 56888888898887654443333322111 11 0    11223444444444444


Q ss_pred             HHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014682          332 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~  411 (420)
                      .. .+......+|.+|+++|+++.++.+....+|..+++.+.+.+.+..          ||+..|.+.+++.++..++.+
T Consensus        94 ~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~----------gWr~~f~~~~~l~~~~~~~~~  162 (368)
T TIGR00903        94 PF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG----------GLQLLIIPIAAVAAAGIILVL  162 (368)
T ss_pred             HH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----------chHHHHHHHHHHHHHHHHHHH
Confidence            43 3444555688899999999999999999999999999999998876          899999998888877766665


Q ss_pred             hhhhhc
Q 014682          412 KPFLAQ  417 (420)
Q Consensus       412 ~~~~~~  417 (420)
                      . ..||
T Consensus       163 ~-~lp~  167 (368)
T TIGR00903       163 A-ALPA  167 (368)
T ss_pred             H-HcCC
Confidence            5 5554

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11043 putative transporter; Provisional

Probab=99.26  E-value=9e-10  Score=102.30  Aligned_cols=145  Identities=19%  Similarity=0.076  Sum_probs=111.4

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 014682          251 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL  330 (420)
Q Consensus       251 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (420)
                      ++|.++.+.+...+...++..++++ ..+++.||++||+.+..+..+..++.+......+      ...+.+..++.+.+
T Consensus        35 ~~~~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~l~G~~  107 (401)
T PRK11043         35 DLQTSASAVSASLSLFLAGFALGQL-LWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES------AAQLLVLRFVQAVG  107 (401)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHH-hhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC------HHHHHHHHHHHHhh
Confidence            3789999999999999999999988 7778888899999998888777666655544321      11222333344444


Q ss_pred             hHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 014682          331 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  410 (420)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~  410 (420)
                      .....+.......|.+|++++++..+..+....++..++|.+.+.+.+..          +|+..|++.+.+.++..+..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~----------g~~~~~~~~~~~~~~~~~~~  177 (401)
T PRK11043        108 VCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF----------GWQAIFATLFAITLLLILPT  177 (401)
T ss_pred             hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------ChHHHHHHHHHHHHHHHHHH
Confidence            44555666778889999999999999999899999999999999999887          89999998887777766554


Q ss_pred             hh
Q 014682          411 FK  412 (420)
Q Consensus       411 ~~  412 (420)
                      +.
T Consensus       178 ~~  179 (401)
T PRK11043        178 LR  179 (401)
T ss_pred             HH
Confidence            43

>PRK03699 putative transporter; Provisional

Probab=99.26  E-value=8.2e-10  Score=102.24  Aligned_cols=145  Identities=14%  Similarity=0.080  Sum_probs=110.3

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 014682          251 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL  330 (420)
Q Consensus       251 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (420)
                      ++|++..+.+...+...++..++++ ..+++.||+|||+.+..+..+..++.+.....++      ...+.+..++.+..
T Consensus        36 ~~~~s~~~~g~~~s~~~~~~~i~~~-~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~G~~  108 (394)
T PRK03699         36 YFNLPVSSMSNTFTFLNAGILISIF-LNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHS------LALFSIAMFVLGVV  108 (394)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcch------HHHHHHHHHHHHHh
Confidence            3799999999999999998888877 7888888999999988888777777666554322      11223333444444


Q ss_pred             hHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 014682          331 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  410 (420)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~  410 (420)
                      .....+.....+.+.+|+++|+++.+..+....+++.++|.+.+.+.+..         .+|+..|.+.+++.++..++.
T Consensus       109 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        109 SGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS---------IEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             hHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------ccHHHHHHHHHHHHHHHHHHH
Confidence            55556667788888899999999999998888999999999998887543         189999998888776665544


Q ss_pred             h
Q 014682          411 F  411 (420)
Q Consensus       411 ~  411 (420)
                      +
T Consensus       180 ~  180 (394)
T PRK03699        180 L  180 (394)
T ss_pred             H
Confidence            4

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.26  E-value=2.3e-10  Score=105.93  Aligned_cols=144  Identities=16%  Similarity=0.098  Sum_probs=118.1

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  331 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (420)
                      +|.++.+.+.+.+...++..++++ ..+++.||+|||+.+..+..+..++........+      ...+.+...+.+++.
T Consensus        24 ~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~   96 (399)
T TIGR00893        24 LGLSAAQYGYVFSAFSWGYVVGQF-PGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA------YVSLYILRVLLGAAE   96 (399)
T ss_pred             hCCChhhHHHHHHHHHHHHHHHHH-hHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC------HHHHHHHHHHHHHHH
Confidence            789999999999999999999988 7778888889999998888877777666655431      223444555566667


Q ss_pred             HHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014682          332 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~  411 (420)
                      ....+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.+..          +|+..|.+.+++.++..+..+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~  166 (399)
T TIGR00893        97 APFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF----------SWQWAFIIEGVLGIIWGVLWL  166 (399)
T ss_pred             HhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC----------CchHHHHHHHHHHHHHHHHhh
Confidence            7788888999999999999999999999999999999999999998877          899999988887776655544


Q ss_pred             h
Q 014682          412 K  412 (420)
Q Consensus       412 ~  412 (420)
                      .
T Consensus       167 ~  167 (399)
T TIGR00893       167 K  167 (399)
T ss_pred             h
Confidence            3

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.26  E-value=8.5e-11  Score=111.81  Aligned_cols=150  Identities=19%  Similarity=0.211  Sum_probs=108.9

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhh-----hh------hHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL-----SV------NFWM   71 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~-----~~------~~~~   71 (420)
                      +++|.+.++      .++......++..++.++.|+++||+|||+.+..+.++..++.++.++     .+      +...
T Consensus       312 ~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (481)
T TIGR00879       312 ENAGVSTDH------AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVA  385 (481)
T ss_pred             HHcCCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHH
Confidence            456777767      788889999999999999999999999999999988888877776652     11      2233


Q ss_pred             HHHHHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccch
Q 014682           72 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  150 (420)
Q Consensus        72 l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~  150 (420)
                      +....++.+.......+. ..++.|.+|+++|++++++.....++|.+++|.+.+.+.+       ..+|+..|      
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~-------~~~~~~~f------  452 (481)
T TIGR00879       386 IVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE-------SIGVGGVF------  452 (481)
T ss_pred             HHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCcccee------
Confidence            333333333333333455 7788999999999999999999999999999999999987       55665555      


Q ss_pred             HHHHHHHHHHHHHH-HHHHhccccc
Q 014682          151 LPCLCISLFAFGVT-IAAFWLPETL  174 (420)
Q Consensus       151 ~~~~~~~~~~~~~~-~~~~~l~e~~  174 (420)
                         .+.++..++.. ...++.||++
T Consensus       453 ---~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       453 ---IFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             ---hhHHHHHHHHHHHHheecccCC
Confidence               34444444433 3344556544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.26  E-value=3e-10  Score=106.66  Aligned_cols=149  Identities=9%  Similarity=0.042  Sum_probs=109.3

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  331 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (420)
                      .|.++.+.+...+...++..++++ ..+++.||+++|+.+..+..+..++.+.....+...  .....+.+..++.+++.
T Consensus        56 ~g~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~  132 (438)
T TIGR00712        56 QGFSKGELGFALSAISIAYGFSKF-IMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWAT--SSIAIMFVLLFLNGWFQ  132 (438)
T ss_pred             cCCCHhHhHHHHHHHHHHHHHhhh-ccchhhhccCCceehHHHHHHHHHHHHHHhcccccc--chHHHHHHHHHHHHHHh
Confidence            489999999999999999999887 778888999999988888777777666554332111  11122223333344444


Q ss_pred             HHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014682          332 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~  411 (420)
                      ....+.....+.|.+|+++|++++|+.+....+++.++|.+.+...+...         +|+..|++.+.+.++..+..+
T Consensus       133 g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~---------~w~~~f~~~~~~~~i~~~~~~  203 (438)
T TIGR00712       133 GMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN---------DWHAALYFPAICAIIVALFAF  203 (438)
T ss_pred             hcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHHHHHHHHH
Confidence            45556677778889999999999999999999999999988876655421         799999998888777655544


Q ss_pred             h
Q 014682          412 K  412 (420)
Q Consensus       412 ~  412 (420)
                      .
T Consensus       204 ~  204 (438)
T TIGR00712       204 A  204 (438)
T ss_pred             H
Confidence            3

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.25  E-value=1e-09  Score=102.13  Aligned_cols=150  Identities=11%  Similarity=0.038  Sum_probs=114.2

Q ss_pred             CccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 014682          250 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  329 (420)
Q Consensus       250 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (420)
                      ++++.++.+.+...+...++..++++ ..+.+.||+|||+.+..+.....++........+      ...+....++.+.
T Consensus        41 ~~~~~s~~~~~~~~~~~~~~~~~~~~-~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~~~l~G~  113 (406)
T PRK15402         41 EDFNAGAEWVPTSMTAYLAGGMFLQW-LLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQS------IEQFTLLRFLQGI  113 (406)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHcc------HHHHHHHHHHHHh
Confidence            34789999999999998999888877 6778888899999998888777766665544321      1123333444444


Q ss_pred             hhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHH
Q 014682          330 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  409 (420)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~  409 (420)
                      ......+.......|.+|+++|+++.++......++..++|.+.+.+.+..          +|+..|++.+++.+++.+.
T Consensus       114 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~----------~w~~~~~~~~~~~~~~~~~  183 (406)
T PRK15402        114 GLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL----------PWRGMFVLFAALAALSFFG  183 (406)
T ss_pred             HhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----------CccHHHHHHHHHHHHHHHH
Confidence            445556777788889899999999999998888899999999999998876          8999999988888777665


Q ss_pred             Hhhhhhhc
Q 014682          410 TFKPFLAQ  417 (420)
Q Consensus       410 ~~~~~~~~  417 (420)
                      .+. ..||
T Consensus       184 ~~~-~~~~  190 (406)
T PRK15402        184 LWR-AMPE  190 (406)
T ss_pred             HHH-hCCC
Confidence            544 3444

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.25  E-value=1e-08  Score=93.46  Aligned_cols=334  Identities=14%  Similarity=0.042  Sum_probs=203.3

Q ss_pred             hHHH-HHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhh-Hhhhhh
Q 014682           18 AGYV-GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACE   95 (420)
Q Consensus        18 ~g~~-~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~   95 (420)
                      .|.. .++-.....+++++.+.+.|+.|.|..++++........+.+-+ +|-+.++.+-.+.|+|.+..+.. -.+++|
T Consensus        51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~  129 (461)
T KOG3098|consen   51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTS  129 (461)
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhh
Confidence            3443 67788888999999999999999999999999998887776644 45667788899999999998888 899999


Q ss_pred             hchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccC-Ccccccc-ccccCccchH---HHHHHHHHHHH---HHHHH
Q 014682           96 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY-PNLFSSE-SLFGKFPYFL---PCLCISLFAFG---VTIAA  167 (420)
Q Consensus        96 ~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~-~~~~gw~-~~~~~~~~~~---~~~~~~~~~~~---~~~~~  167 (420)
                      ..++|++.+..++.-+....+.++|...-..+....... ....+-+ ..+ ... ..   ...+..++...   .++..
T Consensus       130 ~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~v~~~~~~l~~i~~  207 (461)
T KOG3098|consen  130 NSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVF-EVL-FIDFEIKVLFGVLLAISVLSIINF  207 (461)
T ss_pred             cCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhc-chh-hhhHHHHHHHHHHHHHHHHHhhhe
Confidence            999999999999999999999988877665554322100 0000110 000 000 00   00111111111   11111


Q ss_pred             HhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcc
Q 014682          168 FWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPK  247 (420)
Q Consensus       168 ~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (420)
                      .++|.+......+..+ ..               ..+..+...+++++|+.+.....++...+....+...+|...... 
T Consensus       208 ~~~p~~~~~~~~~~~~-~~---------------~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft-  270 (461)
T KOG3098|consen  208 DFLPSKDVVNCKSSSE-TS---------------FSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFT-  270 (461)
T ss_pred             eecCccchhhhhhhcc-cc---------------HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhh-
Confidence            1222211111110000 00               011112345667788887777766666555555555555444322 


Q ss_pred             cCCccCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHHHHHHHHHHHhhh----------
Q 014682          248 KLGGLNY-STQMVGEVLAITGFSLLVFQLSLYPFLERI---LGPIMVARIAGVLTIPLLTSYPYIAMLSG----------  313 (420)
Q Consensus       248 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  313 (420)
                        ...+. +....+......+++.+.+++ ....+.||   +|+++....+..+.....++.........          
T Consensus       271 --~~~~~n~~~~~ai~~~~~g~g~v~~g~-~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~  347 (461)
T KOG3098|consen  271 --RKLGSNTTYLIAIYSIGIGLGEVIGGL-DFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPL  347 (461)
T ss_pred             --hhccCcchhHHHHHHHHHhHHHHHHHH-HHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCccccc
Confidence              11222 233445555666777777666 34444443   46777777777666665555433221111          


Q ss_pred             --hHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhH
Q 014682          314 --FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  375 (420)
Q Consensus       314 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~  375 (420)
                        ........+..++.|+.....+...+.+.+... +++|.++.++.-.-+.++.+++-.....
T Consensus       348 ~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  348 LFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             ccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence              012445666777888889999999999999988 6889999999888888887776554433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.24  E-value=1.1e-09  Score=101.38  Aligned_cols=145  Identities=19%  Similarity=0.089  Sum_probs=110.3

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 014682          251 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL  330 (420)
Q Consensus       251 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (420)
                      ++|.++.+.+...+...+...++++ ..+.+.||+|||+.+..+..+..++.+.....++      ...+.+..++.+++
T Consensus        37 ~~~~s~~~~~~~~~~~~~~~~~~~~-~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~  109 (394)
T PRK11652         37 DLNVREGAVQAVMAAYLLTYGLSQL-FYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS------LTVLIAASAIQGLG  109 (394)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHH-hhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc------HHHHHHHHHHHHhh
Confidence            3799999999999999999999987 7778888899999998888777766665544321      12233334444444


Q ss_pred             hHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 014682          331 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  410 (420)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~  410 (420)
                      .....+.......|..++++++++.+..+....++..++|.+.+.+.+..          +|+..|.+.+++.++..+..
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~----------g~~~~f~~~~~~~~~~~~~~  179 (394)
T PRK11652        110 TGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF----------GWRACYLFLLLLGAGVTFSM  179 (394)
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------ChHHHHHHHHHHHHHHHHHH
Confidence            44556666777888889899999999999999999999999999998876          89999998877666554444


Q ss_pred             hh
Q 014682          411 FK  412 (420)
Q Consensus       411 ~~  412 (420)
                      ..
T Consensus       180 ~~  181 (394)
T PRK11652        180 AR  181 (394)
T ss_pred             HH
Confidence            33

>TIGR00897 2A0118 polyol permease family

Probab=99.24  E-value=1.3e-09  Score=101.18  Aligned_cols=156  Identities=15%  Similarity=0.056  Sum_probs=108.3

Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 014682          216 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  295 (420)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (420)
                      |++....+..++..........+.+.+..+      +|.++.+.+...+...++..++++ ..+++.||+|||+.+..+.
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~g~s~~~~g~~~~~~~~~~~i~~~-~~g~l~dr~g~k~~l~~~~   85 (402)
T TIGR00897        13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKA------LGLSPQQSASAFTLYGIAAAISAW-ISGVVAEIIGPLKTMMIGL   85 (402)
T ss_pred             chhhHHHHHHHHHHHhhhhHHHhHHHHHHH------hCCCHHHhHHHHHHHHHHHHHHHH-HHHHHHHHcCcHHHHHHHH
Confidence            444555555555555544444455555532      689999999999999999999988 7788888899999999888


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHH-HHhhhhhh
Q 014682          296 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFK-AAGPAGGG  374 (420)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~~g~~~~g  374 (420)
                      .+..++.+..........  .+..+.....+.+.+.....+.......+..|+++|++++|+.+...++|. .++|.+.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~--~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~  163 (402)
T TIGR00897        86 LLWCVGHAAFIVFGLGHA--NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSS  163 (402)
T ss_pred             HHHHHHHHHHHHHhccCc--cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877776544322111101  122222333334444455556666777788999999999999999999996 58999988


Q ss_pred             HHHHhh
Q 014682          375 ALFSWA  380 (420)
Q Consensus       375 ~l~~~~  380 (420)
                      .+.+..
T Consensus       164 ~l~~~~  169 (402)
T TIGR00897       164 YAIPAF  169 (402)
T ss_pred             hccccc
Confidence            888766

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.24  E-value=2.4e-09  Score=99.28  Aligned_cols=184  Identities=8%  Similarity=-0.074  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 014682          218 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  297 (420)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (420)
                      +......++...+.........|.+.      +++|.+..+.|.+.+...++..++++ ..+++.||+|+|+.+..+..+
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~------~~~~~s~~~~g~l~s~~~~g~~i~~~-~~g~l~~r~G~r~~~~~g~~l   77 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQ------QAFTLTAFQAALVQSAFYGGYFIMAI-PAAIFMKKLSYKAGILLGLFL   77 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHH------HHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHH
Confidence            34444455555544444344455442      23799999999999999999999988 677888899999999999998


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHH
Q 014682          298 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF  377 (420)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  377 (420)
                      ..++.+.+......+   .+..+....++.+.+.....+..+.+..+..|++++++..++.+...++|..++|.+.+.+.
T Consensus        78 ~~~g~~l~~~~~~~~---~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        78 YALGAFLFWPAAEIM---NYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHHHHHHHHhhc---cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888876654432211   12234444555566667777777888888899999999999999999999999999999886


Q ss_pred             HhhhhccC----------------CCCCCCchHHHHHHHHHHHHHHHHHh
Q 014682          378 SWAQKRLD----------------ASFLPGSQMVFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       378 ~~~~~~~~----------------~~~~~g~~~~f~~~~~~~~~~~~~~~  411 (420)
                      ....+...                .....+|+.+|.+.+++.++..++..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~  204 (410)
T TIGR00885       155 LSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM  204 (410)
T ss_pred             hcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44211000                00012689999888887776655443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.24  E-value=2e-10  Score=106.18  Aligned_cols=152  Identities=13%  Similarity=0.080  Sum_probs=110.7

Q ss_pred             cccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhhh
Q 014682            4 DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV-NFWMAVLTRFLLGSL   82 (420)
Q Consensus         4 ~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~   82 (420)
                      ++|.+.++      .|...+.+.++..++++..|++.||+|||+.+..+..+..++.++....+ +...+.  -++.|++
T Consensus       234 ~~g~s~~~------ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~g~g  305 (393)
T PRK09705        234 EIGASAQY------SGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVCGLG  305 (393)
T ss_pred             HcCCChhh------hhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHHHHh
Confidence            46888888      99999999999999999999999999999999888887777766554333 322222  2456887


Q ss_pred             ccchhhh-Hhhhhhhch-hhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           83 NGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        83 ~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      .+...|. .....+..+ +++|++.+++.+....++..++|.+.+++.+       ..|        ++...+.+..+..
T Consensus       306 ~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~-------~~g--------~~~~~~~~~~~~~  370 (393)
T PRK09705        306 LGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRS-------ISG--------NYLMDWAFHALCV  370 (393)
T ss_pred             ccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhC--------CchHHHHHHHHHH
Confidence            7777675 666667664 6789999999999999999999999999998       222        1333334444444


Q ss_pred             HHH-HHHHHhcccccCCCC
Q 014682          161 FGV-TIAAFWLPETLHRHN  178 (420)
Q Consensus       161 ~~~-~~~~~~l~e~~~~~~  178 (420)
                      +.. .......||+++++.
T Consensus       371 ~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        371 VGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             HHHHHHHHHhccccccchh
Confidence            443 334556677665443

>PRK09952 shikimate transporter; Provisional

Probab=99.23  E-value=1.6e-10  Score=108.39  Aligned_cols=151  Identities=16%  Similarity=0.188  Sum_probs=103.8

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhh---h-hhHHHHHHHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL---S-VNFWMAVLTRFL   78 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l   78 (420)
                      +++|.++++      ...+.....+...++.+..|+++||+|||+++..+.++..++.+....   . ++.+.+++..++
T Consensus       279 ~~~g~s~~~------~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  352 (438)
T PRK09952        279 QNLGLPREL------FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIML  352 (438)
T ss_pred             HhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            345665554      455555566677888899999999999999998887766555433322   1 234444555667


Q ss_pred             hhhhccchhhh-HhhhhhhchhhhhhhHHHHHH-HHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHH
Q 014682           79 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI  156 (420)
Q Consensus        79 ~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  156 (420)
                      .|++.+...+. .+++.|.+|++.|+.+.++.. .+..+|..++|.+.+++.+.       .+       .+|..++...
T Consensus       353 ~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~-------~~-------~~~~~~~~~~  418 (438)
T PRK09952        353 ANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTY-------FG-------GSWHSVAIYL  418 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-------cC-------CCchHHHHHH
Confidence            77877776665 899999999999998988854 44568999999999999872       11       1244444555


Q ss_pred             HHHHHHHHHHHHhcccc
Q 014682          157 SLFAFGVTIAAFWLPET  173 (420)
Q Consensus       157 ~~~~~~~~~~~~~l~e~  173 (420)
                      ++.+++..+..+.++|+
T Consensus       419 ~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        419 LAGCLISAMTALLMKDN  435 (438)
T ss_pred             HHHHHHHHHHHHHcccc
Confidence            55566555555666653

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.21  E-value=5.4e-09  Score=96.52  Aligned_cols=190  Identities=11%  Similarity=-0.001  Sum_probs=121.0

Q ss_pred             chhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 014682          215 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  294 (420)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (420)
                      +|.++...+.+.........+....+....     .++++++.+.+.+.++..+...+.++ ..+++.||+|.|++...+
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~-----~~~~ls~~q~g~l~ai~~l~~al~ri-p~G~l~Dr~G~R~v~~~~  106 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNK-----IGFNFTTDQLFLLTALPSVSGALLRV-PYSFMVPIFGGRRWTVFS  106 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCChHHHHHH
Confidence            345555555554444444444333332222     23899999999999999999999988 447888889999999888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhh
Q 014682          295 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG  374 (420)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g  374 (420)
                      .++..+..+...+...... .....+.+..++.++. ....+.....+++.+|+++||++.|+....+++|..+++.+..
T Consensus       107 ~ll~~i~~~~~~~a~~~~~-~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p  184 (462)
T PRK15034        107 TAILIIPCVWLGIAVQNPN-TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAP  184 (462)
T ss_pred             HHHHHHHHHHHHHHHcccC-CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            8887777666554311001 1122334444444444 4566778888999999999999999997777777777666665


Q ss_pred             HHH-----HhhhhccCCC---CCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          375 ALF-----SWAQKRLDAS---FLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       375 ~l~-----~~~~~~~~~~---~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      .+.     +..+......   ...+++.+.++.+.+.++..++.++
T Consensus       185 ~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~  230 (462)
T PRK15034        185 LVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS  230 (462)
T ss_pred             HHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            544     3221110000   0114777777777777776666655

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.21  E-value=2.3e-09  Score=100.50  Aligned_cols=137  Identities=9%  Similarity=-0.055  Sum_probs=110.1

Q ss_pred             CccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 014682          250 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  329 (420)
Q Consensus       250 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (420)
                      +++|.++.+.+...+...++..++++ ..+++.||+|||+.+..+.....++.+...+..+      ...+.+.-++.+.
T Consensus        46 ~~~~~s~~~~~~~~~~~~~~~~l~~~-~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~  118 (426)
T PRK12307         46 ADLGLTDMEGAFLATAAFIGRPFGGA-LFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASG------VIMLTLSRFIVGM  118 (426)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHH
Confidence            34799999999999999999999887 7788888899999999999888887776655432      2223344455556


Q ss_pred             hhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHH
Q 014682          330 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVE  403 (420)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~  403 (420)
                      +.....+....+..|..|+++|+++.++......+|..+++.+.+.+.+..          +|+..|++.....
T Consensus       119 g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~----------~w~~~f~i~~~~~  182 (426)
T PRK12307        119 GMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY----------GWRAAFFVGLLPV  182 (426)
T ss_pred             HHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC----------CHHHHHHHHHHHH
Confidence            666778888889999999999999999999999999999999888887766          8999998754433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.20  E-value=3.1e-10  Score=105.99  Aligned_cols=151  Identities=13%  Similarity=0.158  Sum_probs=123.2

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCc--hhHHHHHHHHHHHHHHHhh--------hhhHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK--PVIIMGTASVVIFNTLFGL--------SVNFWMA   72 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk--~~l~~~~~~~~~~~~~~~~--------~~~~~~l   72 (420)
                      +++|++..|      ...+.-+..+...++++.+|++.||+|.|  +++..+++++.+..+...+        .++.+.+
T Consensus       310 ~~lg~s~~~------l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f  383 (477)
T PF11700_consen  310 EVLGMSTTQ------LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEF  383 (477)
T ss_pred             HhcCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHH
Confidence            578999999      88888899999999999999999999999  8998888888666665555        6788889


Q ss_pred             HHHHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchH
Q 014682           73 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL  151 (420)
Q Consensus        73 ~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~  151 (420)
                      .+.-++.|++.|...+. .++.+|..|+++.+..+|++....-....+||++-+.+.+.       .|        +.|.
T Consensus       384 ~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~-------tg--------~~r~  448 (477)
T PF11700_consen  384 WVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDA-------TG--------SQRY  448 (477)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hC--------Cchh
Confidence            99999999999998887 99999999999999999999999999999999999999983       22        2333


Q ss_pred             HHHHHHHHHHHHHHHHHhccccc
Q 014682          152 PCLCISLFAFGVTIAAFWLPETL  174 (420)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~l~e~~  174 (420)
                      .+....++.++.+++.+.+++++
T Consensus       449 g~~~l~~lf~~gl~ll~~v~~~~  471 (477)
T PF11700_consen  449 GFLFLLVLFLIGLILLFFVDVEK  471 (477)
T ss_pred             HHHHHHHHHHHHHHHHhhccchh
Confidence            33444444444445555555443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.20  E-value=1.8e-09  Score=100.05  Aligned_cols=179  Identities=15%  Similarity=0.091  Sum_probs=122.2

Q ss_pred             chhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 014682          215 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  294 (420)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (420)
                      ||.+|......++.......+..+.|.|..+.     +|+++.+.|...+...+...++++ ..+++.||+|||+.+..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~l~~~i~~~-~~G~l~Dr~grr~~~~~~   74 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDV-----NGLSKTDTGIVFSCISLFSILFQP-LFGLISDKLGLKKHLLWI   74 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHHHH
Confidence            57788888888888777777777888888665     799999999999999999999998 788889999999998876


Q ss_pred             HHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhh
Q 014682          295 GVLTIPLLTSYPYIAMLS--GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG  372 (420)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~  372 (420)
                      .....+...........+  ....+....+..+..+.......+....+..+..  ++++...|......++|..++|.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~  152 (396)
T TIGR00882        75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASI  152 (396)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHH
Confidence            555444333221111100  0011111222233333444445555555555532  234567788888889999999999


Q ss_pred             hhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          373 GGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       373 ~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      .|.+.+.           +|+..|++.+.+.++..++.+.
T Consensus       153 ~g~l~~~-----------~~~~~f~~~~~~~~~~~~~~~~  181 (396)
T TIGR00882       153 AGILFSI-----------DPQIVFWLGSGFALILMLLLMF  181 (396)
T ss_pred             Hhhhhcc-----------CchHHHHHHHHHHHHHHHHHHH
Confidence            9988653           6888998888877776655443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.19  E-value=1.4e-09  Score=102.63  Aligned_cols=147  Identities=7%  Similarity=-0.036  Sum_probs=103.8

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhH
Q 014682          253 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSV  332 (420)
Q Consensus       253 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (420)
                      |++..+.+...+...++..++++ ..+++.||+|+|+.+..+.++..+..+...+.....  .....+.+..++.+++..
T Consensus        59 g~s~~~~g~~~~~~~i~~~~~~~-~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~l~gi~~g  135 (452)
T PRK11273         59 GFSRGDLGFALSGISIAYGFSKF-IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT--SSIAVMFVLLFLCGWFQG  135 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh-hhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhccc--ccHHHHHHHHHHHHHHHh
Confidence            89999999999999999999988 788888999999999988888777776665542111  112222333344444555


Q ss_pred             HHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHH-hhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014682          333 SIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAA-GPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~  411 (420)
                      ...+.......+.+|+++|+++.|+.+....+|+.+ +|.....+....          +|+..|++.+.+.++..++..
T Consensus       136 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~----------gw~~~f~i~~~~~~~~~~l~~  205 (452)
T PRK11273        136 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN----------DWHAALYMPAFAAILVALFAF  205 (452)
T ss_pred             ccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc----------cHHHHHHHHHHHHHHHHHHHH
Confidence            555666677788899999999999999888888754 444333333222          799999988877666554444


Q ss_pred             h
Q 014682          412 K  412 (420)
Q Consensus       412 ~  412 (420)
                      .
T Consensus       206 ~  206 (452)
T PRK11273        206 A  206 (452)
T ss_pred             H
Confidence            3

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.18  E-value=1.3e-09  Score=103.24  Aligned_cols=148  Identities=18%  Similarity=0.181  Sum_probs=118.4

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 014682          251 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL  330 (420)
Q Consensus       251 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (420)
                      +++++..+.|.+.+...++..++++ ..+++.||+++|+.+..+.++..+..++..+...    .....+++..++.+++
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~~~G~~  144 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQI-PVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG----GGIALVVFCRVIQGLA  144 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHc-chHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH----cCchHHHHHHHHHHHh
Confidence            5789999999999999999999988 7778888899999998888777666655443221    1122345556666777


Q ss_pred             hHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 014682          331 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  410 (420)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~  410 (420)
                      .....|....+.++.+|+++|+++.|+.+....+|..++|.+.+.+.+..         .+|+..|++.+++.++..++.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~---------~gw~~~f~i~~~~~~~~~~~~  215 (465)
T TIGR00894       145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW---------GGWPMIFYVFGIVGCAWSLLW  215 (465)
T ss_pred             cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------CCCCeehhhhhHHHHHHHHHH
Confidence            88888999999999999999999999999999999999999999998762         179999999888776665554


Q ss_pred             hh
Q 014682          411 FK  412 (420)
Q Consensus       411 ~~  412 (420)
                      +.
T Consensus       216 ~~  217 (465)
T TIGR00894       216 FV  217 (465)
T ss_pred             HH
Confidence            43

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.17  E-value=2.5e-09  Score=101.49  Aligned_cols=149  Identities=11%  Similarity=0.118  Sum_probs=110.0

Q ss_pred             ccccccccccchhhhhHHHHH-HHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHH---hhh-hhHHHHHHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGS-SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNFWMAVLTRF   77 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s-~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~   77 (420)
                      +++|.+.++      .++... ...++..++.++.|+++||+|||+.+.++.++.+++.+..   +.. ++.+.+.+.-+
T Consensus       251 ~~~G~s~~~------~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~  324 (491)
T PRK11010        251 RGVGFDAGE------VGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF  324 (491)
T ss_pred             HhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            467888888      999874 6678999999999999999999998877666555544332   232 45555555666


Q ss_pred             Hhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHH
Q 014682           78 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI  156 (420)
Q Consensus        78 l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  156 (420)
                      ++.++.|...+. .++..+..+++.+++..++.+...++|..++++++|.+.+       ..||+.         .+.+.
T Consensus       325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~-------~~G~~~---------~f~~~  388 (491)
T PRK11010        325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE-------AHGWPT---------FYLFS  388 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhChHH---------HHHHH
Confidence            666665655555 7888899999999999999999999999999999999998       445443         34666


Q ss_pred             HHHHHHHHHHHHhcccc
Q 014682          157 SLFAFGVTIAAFWLPET  173 (420)
Q Consensus       157 ~~~~~~~~~~~~~l~e~  173 (420)
                      ++.++..++....++++
T Consensus       389 ~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        389 VAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            66666655555555554

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.17  E-value=6.2e-10  Score=86.66  Aligned_cols=134  Identities=17%  Similarity=0.231  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Q 014682          266 TGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRA  345 (420)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (420)
                      ..++..+++. ..+++.||.+||+.+..+.....++.+......+      .........+.+.......+.......|.
T Consensus         7 ~~~~~~~~~~-~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   79 (141)
T TIGR00880         7 YALGQLIYSP-LSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN------ITVLIIARFLQGFGAAFALVAGAALIADI   79 (141)
T ss_pred             ehhHHHHHHh-hHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            3455666666 6677888889999988887777666655443321      11233344455556667778888899999


Q ss_pred             CCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhc
Q 014682          346 VDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ  417 (420)
Q Consensus       346 ~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  417 (420)
                      .|+++|+++.++.+....++..++|.+.+.+.+..          +++..+.+.+.+.+++.+..+. ..||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~  140 (141)
T TIGR00880        80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL----------GWRAPFLFLAILALAAFILLAF-LLPE  140 (141)
T ss_pred             CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc----------chHHHHHHHHHHHHHHHHHHhh-cCCC
Confidence            99999999999999999999999999999998776          7888888888887777666655 4444

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.17  E-value=8.3e-08  Score=86.13  Aligned_cols=330  Identities=14%  Similarity=0.094  Sum_probs=173.2

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhh-Hhhhhhh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI   96 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~   96 (420)
                      .+.+.-+-.+...+..+.+.+..+|...+.=...+..++.++.++.++++|.+.=+++-.+.+++.|..... ..+ +..
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~  139 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THF  139 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHh
Confidence            455666777788888888999999998665556677788889999999999998888888999988877666 554 445


Q ss_pred             chhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHHHH-HHhcccccC
Q 014682           97 FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLH  175 (420)
Q Consensus        97 ~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~e~~~  175 (420)
                      +++    ...+-++.+.+.++++|+..-..+.+        .       ..+.|...+......++..+. ++.+|+++.
T Consensus       140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~--------~-------g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~  200 (402)
T PF02487_consen  140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTT--------L-------GLSPRTTLLIMLVLPAIFLLSYFFLLPSPPT  200 (402)
T ss_pred             cCc----cccccccCCcChhhHHHHHHHHHHHH--------h-------CcCHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            553    35788888888889888877655553        1       223444444544444443333 344554332


Q ss_pred             CCCCCCCcc-cchhHhhhhhhhhhhhhhcCCCCchhhhcc-chhHHHHHHHHHHHHhhhh-hHHHHHHHhhcCcccCCcc
Q 014682          176 RHNDDDDSC-DVSYDALESASAEVKEEEGREATPKKSLLK-NWPLMSSIIVYCVFSLHDM-AYSEIFSLWANSPKKLGGL  252 (420)
Q Consensus       176 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  252 (420)
                      ..+.++.+. ++..++..+.+.+..+.+...+...++-++ -|++...++-.+...+... ......+......    ..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~----~~  276 (402)
T PF02487_consen  201 NRPYQESESEDEAEDDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPN----SF  276 (402)
T ss_pred             cCCCcccCCCCcccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCc----cC
Confidence            222111111 111011000000000001111112221111 1222222222222211111 1122222222111    01


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhH
Q 014682          253 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSV  332 (420)
Q Consensus       253 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (420)
                      .-...+.......+.++..+++- ....+  |+++.+.+.....+..+..++-.+....   ...+.+++..+.-|..++
T Consensus       277 ~~~r~~Y~~Y~~~YQ~GVFISRS-S~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fi---psi~ivf~lif~eGLlGG  350 (402)
T PF02487_consen  277 FSPRDQYRWYQLLYQLGVFISRS-SLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFI---PSIWIVFVLIFYEGLLGG  350 (402)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhc-ceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHhhh
Confidence            11233444555556666555543 11111  1222222222222222222222222211   223344455566667777


Q ss_pred             HHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHH
Q 014682          333 SIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF  377 (420)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  377 (420)
                      ..+......+.+..|+++|..++|.......+|..++..++-.+-
T Consensus       351 a~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  351 ASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            777777777788899999999999999888888887776654443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.17  E-value=5.1e-10  Score=103.17  Aligned_cols=120  Identities=17%  Similarity=0.137  Sum_probs=105.7

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL   82 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~   82 (420)
                      +|.|.++.+      .|.+.+...++..+..++.|++.||+|+|+.+..+....+++.+..+.+++.+.+++..++.|++
T Consensus       233 ~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  306 (382)
T PRK11128        233 QAAGYSAST------IGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT  306 (382)
T ss_pred             HHCCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            456778777      89999999999999999999999999999999999999999888888899999999999999999


Q ss_pred             ccchhhh-HhhhhhhchhhhhhhHHHHHH-HHhHHHHHHHHHHHhHhcc
Q 014682           83 NGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        83 ~g~~~~~-~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~l~~  129 (420)
                      .+...+. ..++.+. +++++++..+..+ ...++|..+||.++|.+.+
T Consensus       307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887776 7888886 5666788888876 6677888999999999998

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.16  E-value=1.4e-10  Score=107.33  Aligned_cols=121  Identities=22%  Similarity=0.226  Sum_probs=97.5

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHH--HHHhh--hhhHHHHHHHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN--TLFGL--SVNFWMAVLTRFL   78 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~--~~~~~--~~~~~~l~~~r~l   78 (420)
                      +++|.++++      .+...+...++..++.++.|+++||+|||+.+.....+..+..  ....+  .++.+.+....++
T Consensus       248 ~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (394)
T TIGR00883       248 QTLGLSANS------ALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLG  321 (394)
T ss_pred             HhcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            567778778      8999999999999999999999999999998775554444333  22222  2466777778888


Q ss_pred             hhhhccchhhh-HhhhhhhchhhhhhhHHHHH-HHHhHHHHHHHHHHHhHhcc
Q 014682           79 LGSLNGLLGPI-KAYACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        79 ~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~l~~~l~~  129 (420)
                      .|++.+...+. .+++.|.+|+++|++++++. +.+..+|..++|.+++.+.+
T Consensus       322 ~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~  374 (394)
T TIGR00883       322 LALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA  374 (394)
T ss_pred             HHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence            89887777776 99999999999999999984 56677899999999999998

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.15  E-value=6.3e-07  Score=83.04  Aligned_cols=341  Identities=9%  Similarity=0.080  Sum_probs=176.3

Q ss_pred             hHHHHHHHHHHHHHh-hhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhh----hh------------------------
Q 014682           18 AGYVGSSFMFGRALT-SVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS----VN------------------------   68 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~-~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~----~~------------------------   68 (420)
                      ..++-+...+...+. .++.+++++|++|++++-.....+....+++++.    ++                        
T Consensus        45 i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~  124 (472)
T TIGR00769        45 IPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIA  124 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHH
Confidence            788888887777776 8999999999999999988777777766666654    11                        


Q ss_pred             ---HHHHHHHHHHhhhhccchhh-h-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCcccccccc
Q 014682           69 ---FWMAVLTRFLLGSLNGLLGP-I-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESL  143 (420)
Q Consensus        69 ---~~~l~~~r~l~G~~~g~~~~-~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~  143 (420)
                         .|...+.-+...+-+..... . ..++.|.++.+|-.|.+++...+.++|.++++.+..++.+.....+..      
T Consensus       125 ~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~------  198 (472)
T TIGR00769       125 ILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPG------  198 (472)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc------
Confidence               12222333334443333333 4 788999999999999999999999999999999988887421111000      


Q ss_pred             ccCccc----hHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHH
Q 014682          144 FGKFPY----FLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM  219 (420)
Q Consensus       144 ~~~~~~----~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (420)
                        ...|    .....+.++..++...+.+++.+....+++..+.+        + .+++++.+....+..+.++|+|.++
T Consensus       199 --~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~-~~~k~k~k~~~~es~k~i~~S~yL~  267 (472)
T TIGR00769       199 --VDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPA--------L-KEKKVKPKMSTMESLKFLVSSPYIL  267 (472)
T ss_pred             --cChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchh--------h-ccccCCCCCCHHHHHHHHHhCHHHH
Confidence              1122    11222333333333334444432221111100000        0 0000000111234567788999887


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 014682          220 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTI  299 (420)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (420)
                      ...+...+.+......+...-....+.. .+.-.. ..-.|......++..++.+++. +++.||.|-+....+.-+...
T Consensus       268 ~ia~~vi~y~~~~nlve~~~k~~v~~~~-p~~~~~-~~f~g~~~~~~gi~tl~~~l~~-~~l~~~~Gw~~~a~i~Pii~l  344 (472)
T TIGR00769       268 DLALLVIAYGISINLVEVTWKSKLKAQY-PSPNEY-SAFMGDFSTWTGVVSVTMMLLS-GNVIRKYGWLTAALITPLVML  344 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHH
Confidence            7666655554333222211111111110 000011 2234555666677777777745 788888887666655544444


Q ss_pred             HHHHHHH---HHHHhhhh--------HHHHHHHHHH---HHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHH-HH
Q 014682          300 PLLTSYP---YIAMLSGF--------GLAFLLNCAS---VVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM-SL  364 (420)
Q Consensus       300 ~~~~~~~---~~~~~~~~--------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~  364 (420)
                      +....+.   ........        +......+..   ...-..-.......--..---.++|.|.++-+....+. .+
T Consensus       345 it~~~Ff~~~~f~~~~~~~~~~l~~~pl~l~v~~g~~~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~  424 (472)
T TIGR00769       345 LTGVAFFSLIFFGGPAAPLVAKLGMTPLLLAVYVGAIQNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARL  424 (472)
T ss_pred             HHHHHHHHHHHhcccchhhhhhhccChHHHHHHHHHHHHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhh
Confidence            4222211   11110000        0000011110   11111111111122222222357899999999888776 68


Q ss_pred             HHHHhhhhhhHHHH
Q 014682          365 FKAAGPAGGGALFS  378 (420)
Q Consensus       365 g~~~g~~~~g~l~~  378 (420)
                      |-..|..+...+..
T Consensus       425 Gks~gs~i~~~l~~  438 (472)
T TIGR00769       425 GKSGGALIQQGLLV  438 (472)
T ss_pred             hhHHHHHHHHHHHH
Confidence            88877776655433

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.15  E-value=4.4e-10  Score=103.45  Aligned_cols=144  Identities=10%  Similarity=0.044  Sum_probs=113.2

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  331 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (420)
                      +|.+..+.+.+.+...++..++++ ..+++.||+|||+.+..+..+..++.++.....+      ...+.+..++.+++.
T Consensus        25 ~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~   97 (379)
T TIGR00881        25 IGLSKTDLGLLLSSFSIAYGISKF-VMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS------LWVMAALWALNGIFQ   97 (379)
T ss_pred             hCCCHhHHHHHHHHHHHHHHhhhh-hhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHhhc
Confidence            799999999999999999999988 7788888899999999998888777776655432      222334445555666


Q ss_pred             HHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhh-hhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 014682          332 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPA-GGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  410 (420)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~-~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~  410 (420)
                      ....+...++..|.+|+++|+++.++.+....+|..++|. +.+.+.+..          +|+..|++.+.+.++..++.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  167 (379)
T TIGR00881        98 GMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY----------SWHWVFIVPGIIAIIVSLIC  167 (379)
T ss_pred             cccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC----------CchhHHHHHHHHHHHHHHHH
Confidence            6677888899999999999999999999999999999994 555555554          78889988887776655554


Q ss_pred             hh
Q 014682          411 FK  412 (420)
Q Consensus       411 ~~  412 (420)
                      +.
T Consensus       168 ~~  169 (379)
T TIGR00881       168 FL  169 (379)
T ss_pred             he
Confidence            43

>TIGR00898 2A0119 cation transport protein

Probab=99.11  E-value=9.7e-10  Score=105.38  Aligned_cols=135  Identities=21%  Similarity=0.135  Sum_probs=102.3

Q ss_pred             HHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHhhhhccchhhh-Hhhhhhhchh
Q 014682           23 SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF--WMAVLTRFLLGSLNGLLGPI-KAYACEIFRE   99 (420)
Q Consensus        23 s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~   99 (420)
                      ....+....+.++.+++.||+|||+++..+.++.+++.++..+.++.  +...+.-++.+++.+...+. ..+..|.+|+
T Consensus       362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  441 (505)
T TIGR00898       362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT  441 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence            34456667788889999999999999999999988888887776543  44445555666666665665 8899999999


Q ss_pred             hhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHHHHHHhcccccC
Q 014682          100 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  175 (420)
Q Consensus       100 ~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~  175 (420)
                      +.|++++++.+....+|.+++|.+.+ +.+                 .++..++.+.+...++..+..+++||++.
T Consensus       442 ~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~lpet~~  499 (505)
T TIGR00898       442 VVRNLGVGVCSTMARVGSIISPFLVY-LGE-----------------KWLFLPLVLFGGLALLAGILTLFLPETKG  499 (505)
T ss_pred             HHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-----------------HHHhhHHHHHHHHHHHHHHHHHcCcCCCC
Confidence            99999999999999999999999988 432                 12233445555666665566678888654

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.10  E-value=3.2e-08  Score=90.13  Aligned_cols=146  Identities=12%  Similarity=0.023  Sum_probs=113.4

Q ss_pred             ccCCchhh-HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 014682          251 GLNYSTQM-VGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  329 (420)
Q Consensus       251 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (420)
                      ++|++..+ .|.+.+....+..+..+ .++++.||+|.|+++..+.+.-.+..++.++..+      ...+.+.-++.|+
T Consensus        55 elglT~~qv~G~I~s~F~ysYal~qI-p~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S------l~~L~i~R~llGv  127 (511)
T TIGR00806        55 VLNFTEETVTNEIIPVLPYSHLAVLV-PVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS------VWHMQLMEVFYSV  127 (511)
T ss_pred             HcCCCHHHhcchHHHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence            38999999 99999999999999987 8889999999999999999888888777776543      3345566666777


Q ss_pred             hhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHH
Q 014682          330 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  409 (420)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~  409 (420)
                      +.+... ....++.+.+|+++|+++.|+.+....+|.++++++.+.+ ...+-.       .+....++......++.++
T Consensus       128 aEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr-------~y~~Ln~Isl~s~~~a~~~  198 (511)
T TIGR00806       128 TMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWI-------SYSTLNIISLVFMTFSVFL  198 (511)
T ss_pred             HHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCch-------hHHHHHHHHHHHHHHHHHH
Confidence            777777 8888999999999999999999999999999999999994 333111       3444444444445555555


Q ss_pred             Hhh
Q 014682          410 TFK  412 (420)
Q Consensus       410 ~~~  412 (420)
                      .++
T Consensus       199 a~~  201 (511)
T TIGR00806       199 ALF  201 (511)
T ss_pred             HHh
Confidence            544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10133 L-fucose transporter; Provisional

Probab=99.10  E-value=2.4e-08  Score=93.51  Aligned_cols=150  Identities=9%  Similarity=-0.070  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 014682          218 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  297 (420)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (420)
                      +....+.++...+.........|.+      ++++|.++.+.+...+...++..++++ ..+.+.||+|+|+.+..+..+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~p~i------~~~~~~s~~~~gl~~~~~~~g~~i~~~-~~g~l~dr~G~r~~l~~g~~~  100 (438)
T PRK10133         28 FALLCSLFFLWAVANNLNDILLPQF------QQAFTLTNFQAGLIQSAFYFGYFIIPI-PAGILMKKLSYKAGIITGLFL  100 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH------HHHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHHHHHHH
Confidence            3444455555555555555555544      233899999999999999999999988 677888888999999999988


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHH
Q 014682          298 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF  377 (420)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  377 (420)
                      ..++.++.......   .....+.+..++.+.+.....+..+.++.+..|++++...+++.+....+|..++|.+++.+.
T Consensus       101 ~~~~~~l~~~~~~a---~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        101 YALGAALFWPAAEI---MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88887664322111   112234445555566667777787888888766666667899999999999999999987765

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.09  E-value=1.1e-08  Score=97.46  Aligned_cols=156  Identities=8%  Similarity=-0.054  Sum_probs=114.2

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHH
Q 014682          251 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM------LSGFGLAFLLNCAS  324 (420)
Q Consensus       251 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  324 (420)
                      +++.+..+.+...+...++..++++ +.+++.||+|||+.+..+..+..++.+.......      .+.......+++.-
T Consensus        49 ~~~~~~~~~~~~~s~~~ig~~~~~~-~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R  127 (479)
T PRK10077         49 SESAANSLLGFCVASALIGCIIGGA-LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYR  127 (479)
T ss_pred             cccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHH
Confidence            3588899999999999999999988 7788899999999999988887766554433110      01112233344555


Q ss_pred             HHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHH
Q 014682          325 VVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEA  404 (420)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~  404 (420)
                      ++.+++.....+...++++|.+|+++||++.++.+....+|..+++.+.+.+.........  ...+|+..|++.++..+
T Consensus       128 ~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~--~~~gWr~~f~~~~~~~~  205 (479)
T PRK10077        128 IIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWL--NTDGWRYMFASEAIPAL  205 (479)
T ss_pred             HHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc--ccCChHHHHHHHHHHHH
Confidence            6777788888999999999999999999999999999999999888766655432111100  01289999998877776


Q ss_pred             HHHHH
Q 014682          405 IGVLM  409 (420)
Q Consensus       405 ~~~~~  409 (420)
                      +..+.
T Consensus       206 ~~~~~  210 (479)
T PRK10077        206 LFLML  210 (479)
T ss_pred             HHHHH
Confidence            66544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.08  E-value=1.8e-09  Score=90.90  Aligned_cols=121  Identities=15%  Similarity=0.226  Sum_probs=101.0

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhh-------hhHHHHH
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-------VNFWMAV   73 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~-------~~~~~l~   73 (420)
                      +++.+|.|.+|      ...+.++..+|..+ +++.|.+.||+|+|.++.++.+...++......+       +++|.+.
T Consensus        28 Lk~~l~~sq~~------l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~  100 (250)
T PF06813_consen   28 LKSRLGYSQSQ------LNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMC  100 (250)
T ss_pred             HHHHhCCCHHH------HHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHH
Confidence            36788999999      99999999999886 5889999999999999999999999999887663       4678888


Q ss_pred             HHHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhcc
Q 014682           74 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        74 ~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  129 (420)
                      +..++.|.+.+....+ .....+.+| ++||++.++.-...+++..+-..+...+.+
T Consensus       101 ~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen  101 LFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             HHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence            8888888876666554 566667887 579999999999999998887777666655

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.08  E-value=9.4e-10  Score=97.17  Aligned_cols=122  Identities=17%  Similarity=0.251  Sum_probs=112.0

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL   82 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~   82 (420)
                      +++|++..|      ...+.-...+..+++++++|+|.||+|.|+++..++++..+.++..-+...-..+.+.-.+.|..
T Consensus       281 ~~~gls~~~------lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s  354 (438)
T COG2270         281 ADLGLSSTE------LLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTS  354 (438)
T ss_pred             HHcCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHh
Confidence            588999999      99999999999999999999999999999999999999999888887777766777778899999


Q ss_pred             ccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccc
Q 014682           83 NGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  130 (420)
Q Consensus        83 ~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~  130 (420)
                      .|..... .++..+..|+++-++.+|+++...-.+..+||.+-+.+.+.
T Consensus       355 ~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~i  403 (438)
T COG2270         355 LGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQI  403 (438)
T ss_pred             cchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHH
Confidence            8888776 99999999999999999999999999999999999999983

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.08  E-value=2.3e-08  Score=95.61  Aligned_cols=157  Identities=12%  Similarity=-0.029  Sum_probs=113.1

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  331 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (420)
                      ...+..+.+.+.+...++.+++++ ..+++.||+|||+.+..+.++..++.++...............+.+.-++.+++.
T Consensus        51 ~~~~~~~~~~~~~~~~ig~~ig~~-~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  129 (502)
T TIGR00887        51 GPLPSSVSAAVNGSASIGTLAGQL-FFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGI  129 (502)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHH
Confidence            345666778888888899999988 7888899999999998888877777665544322111111234555566667777


Q ss_pred             HHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhcc---C----------CCCCCCchHHHHH
Q 014682          332 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRL---D----------ASFLPGSQMVFFV  398 (420)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~---~----------~~~~~g~~~~f~~  398 (420)
                      ....+....+.+|.+|+++|+++.++.+....+|..+++.+...+.....+..   +          .....+|+..+.+
T Consensus       130 g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~  209 (502)
T TIGR00887       130 GGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGF  209 (502)
T ss_pred             hhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHH
Confidence            88889999999999999999999999999999999999998887665332100   0          0001279999977


Q ss_pred             HHHHHHHHHHH
Q 014682          399 LNVVEAIGVLM  409 (420)
Q Consensus       399 ~~~~~~~~~~~  409 (420)
                      .++..++..++
T Consensus       210 ~~ip~~i~~~~  220 (502)
T TIGR00887       210 GAVPALLALYF  220 (502)
T ss_pred             HHHHHHHHHHH
Confidence            76666655444

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.08  E-value=2.6e-08  Score=93.44  Aligned_cols=146  Identities=10%  Similarity=-0.103  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHhhhHHHHH
Q 014682          259 VGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG--FGLAFLLNCASVVKNLLSVSIIT  336 (420)
Q Consensus       259 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  336 (420)
                      .+..++...++..++++ +.+++.||+|||+.+..+..+..++.+...+.++...  ......+.+.-++.+++.....+
T Consensus        65 ~~~~~~~~~~~~~ig~~-~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~  143 (432)
T PRK10406         65 TAGVFAAGFLMRPIGGW-LFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYG  143 (432)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHh
Confidence            34444554555557777 7889999999999999999888887777655442211  11222344555566677777889


Q ss_pred             HHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHH
Q 014682          337 GLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGV  407 (420)
Q Consensus       337 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~  407 (420)
                      ...++++|..|+++||++.++.......|..+++.+...+.....+...+  ..||+.+|++.++..++..
T Consensus       144 ~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~--~~gWr~~F~i~~~~~ll~~  212 (432)
T PRK10406        144 TSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELR--EWGWRIPFALGAVLAVVAL  212 (432)
T ss_pred             hHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHh--ccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999888777888888877665554322110000  0289999998777666553

>PRK15075 citrate-proton symporter; Provisional

Probab=99.07  E-value=1.1e-09  Score=102.71  Aligned_cols=121  Identities=19%  Similarity=0.181  Sum_probs=89.1

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHH-HH---hhhhhHHHHHHHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT-LF---GLSVNFWMAVLTRFL   78 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~-~~---~~~~~~~~l~~~r~l   78 (420)
                      +.+|.+.++      .++....+.++..++.++.|+++||+|||+++..+..+..+... ..   ...+++..+.+..++
T Consensus       267 ~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (434)
T PRK15075        267 TVLHLSAAD------SLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELW  340 (434)
T ss_pred             HhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            346777777      88888889999999999999999999999998776544433221 11   112344444455556


Q ss_pred             hhhhccchhhh-HhhhhhhchhhhhhhHHHHHHH-HhHHHHHHHHHHHhHhcc
Q 014682           79 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        79 ~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~l~~~l~~  129 (420)
                      .|++.+...+. ..++.|.+|+++|++++++... +..++..++|.+.+++.+
T Consensus       341 ~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~  393 (434)
T PRK15075        341 LSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH  393 (434)
T ss_pred             HHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence            66666666665 7789999999999999998644 444567789999999998

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.06  E-value=1.1e-09  Score=102.99  Aligned_cols=112  Identities=16%  Similarity=0.220  Sum_probs=97.0

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHhhhhccchhhh-Hhhhhh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-VNFWMAVLTRFLLGSLNGLLGPI-KAYACE   95 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~   95 (420)
                      .+++.+...++..++.+++++++||+|||+++..+..+..++.+...+. ++.+.+++..++.|++.+...+. .++++|
T Consensus       259 ~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  338 (437)
T TIGR00792       259 FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVAD  338 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6778888899999999999999999999999999988888887777665 46677777888889988887776 888888


Q ss_pred             hch-------hhhhhhHHHHHHHHhHHHHHHHHHHHhHhcc
Q 014682           96 IFR-------EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        96 ~~~-------~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  129 (420)
                      ..+       +++++..+++.+....+|..+++.+.+.+.+
T Consensus       339 ~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       339 TVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             hhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            865       4567999999999999999999999999987

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.05  E-value=1.7e-08  Score=106.35  Aligned_cols=186  Identities=15%  Similarity=0.068  Sum_probs=116.4

Q ss_pred             hhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 014682          211 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV  290 (420)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (420)
                      .+++++.++.+....++..+........++.+...........-+....++..+...+..++.++ +.+++.||++||++
T Consensus         6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~-~~G~laDr~~rk~~   84 (1140)
T PRK06814          6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSA-LAGQLADKYDKAKL   84 (1140)
T ss_pred             hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhh-hHHhhhhhccHHHH
Confidence            46777777766666555544432222121211111101111112234567777777777778777 78888999999987


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhh
Q 014682          291 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP  370 (420)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~  370 (420)
                      +........+...........   .....+++..++.+.+.....|...+++.+.+|++++++++|+.++..++|..+||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~---~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp  161 (1140)
T PRK06814         85 AKILKFAEIGIAALAIYGFHL---NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGT  161 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHH
Confidence            644222222221111111110   12334555666667777888899999999999999999999999999999999999


Q ss_pred             hhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 014682          371 AGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  410 (420)
Q Consensus       371 ~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~  410 (420)
                      .++|.+.+..          +|+..|.....+.+++.++.
T Consensus       162 ~l~g~l~~~~----------~~~~~~~~~~~~~~~~~~~~  191 (1140)
T PRK06814        162 IIGGLATISG----------NFVILVALLMGIAVLGWLAS  191 (1140)
T ss_pred             HHHHHHHhcc----------ccHHHHHHHHHHHHHHHHHH
Confidence            9999999876          78888854444444444433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.03  E-value=1.2e-08  Score=90.15  Aligned_cols=147  Identities=16%  Similarity=0.071  Sum_probs=116.0

Q ss_pred             CccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 014682          250 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  329 (420)
Q Consensus       250 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (420)
                      +++++|+.|.+++.++..+.+.+.++ ..+.+.||+|.|+....+.++..+-.+...+....++.  +. ++...++.+.
T Consensus        42 ~~~~LS~~q~~ll~aiPil~GallRl-~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~--~~-ll~~gll~G~  117 (417)
T COG2223          42 SDFGLSEGQKGLLVAIPILVGALLRL-PYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPST--WQ-LLVIGLLLGL  117 (417)
T ss_pred             cccCCCHHHHHHHHHHHHHHhHHHHH-HHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCch--HH-HHHHHHHHhc
Confidence            45899999999999999999999998 66778888899999999888877777777666544432  22 3333333333


Q ss_pred             hhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCC---chHHHHHHHHHHHHH
Q 014682          330 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPG---SQMVFFVLNVVEAIG  406 (420)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g---~~~~f~~~~~~~~~~  406 (420)
                       .++.+......+++.+|||++|.+.|+.. .+++|..+...+...+....          +   |+.+..+.....++.
T Consensus       118 -~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~----------g~~~w~~~~~i~~~~l~v~  185 (417)
T COG2223         118 -AGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF----------GFLAWRNVAGIYVVALAIA  185 (417)
T ss_pred             -ccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHH
Confidence             34556677788899999999999999998 99999999999999998887          6   788888887777777


Q ss_pred             HHHHhh
Q 014682          407 VLMTFK  412 (420)
Q Consensus       407 ~~~~~~  412 (420)
                      .+..++
T Consensus       186 ~v~~~~  191 (417)
T COG2223         186 AVLAWL  191 (417)
T ss_pred             HHHHHH
Confidence            666655

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.02  E-value=3.6e-09  Score=92.42  Aligned_cols=146  Identities=19%  Similarity=0.224  Sum_probs=124.5

Q ss_pred             CccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 014682          250 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  329 (420)
Q Consensus       250 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (420)
                      ...+-+..++|.++....+..++.+.+++..+ ||+|+|..+..+...+....+++.+..+.+      .+++.=.+-+.
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~-~~iGy~ipm~~Gl~vmf~sTilFafg~sy~------~l~vAR~LQgv  171 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLI-DRIGYKIPMVAGLFVMFLSTILFAFGNSYP------MLFVARSLQGV  171 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhH-HHhccccHHHHHHHHHHHHHHHHHHcchhH------HHHHHHHHhhh
Confidence            34667788999999999999999999555554 578999999999999999988888765433      45566667777


Q ss_pred             hhHHHHHHHHHHhhhcCCcch-hhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHH
Q 014682          330 LSVSIITGLFILQNRAVDQDQ-RGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVL  408 (420)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~  408 (420)
                      +.........+++++.+|+++ |++++|+.-.+..+|-.+||.++|.+||..          |++.+|+++++++++...
T Consensus       172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~----------Gk~aPFlVL~~v~Lld~~  241 (464)
T KOG3764|consen  172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA----------GKSAPFLVLAIVLLLDGA  241 (464)
T ss_pred             hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc----------CCcCcHHHHHHHHHHHHH
Confidence            788888888899999998765 799999999999999999999999999998          899999999999999887


Q ss_pred             HHhh
Q 014682          409 MTFK  412 (420)
Q Consensus       409 ~~~~  412 (420)
                      +.++
T Consensus       242 L~l~  245 (464)
T KOG3764|consen  242 LQLL  245 (464)
T ss_pred             HHHh
Confidence            7766

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.02  E-value=3.3e-09  Score=98.07  Aligned_cols=121  Identities=13%  Similarity=0.098  Sum_probs=92.5

Q ss_pred             ccccccccccchhhhhHHHHHHHH-HHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhh------hhhHHHHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL------SVNFWMAVLT   75 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~-~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~------~~~~~~l~~~   75 (420)
                      +|.|.++++      .|++..... ....++.++.|++.||+|+|+.+..+..+.++..+....      .++...+...
T Consensus       236 ~~~G~s~~~------ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       236 VDAGWPLEW------IGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             HhcCCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence            467889888      999988876 466778899999999999999998877665333332221      1233444455


Q ss_pred             HHHhhhhccchhhh-Hhhhhhhchh-hhhhhHHHHHHHHhHHHHHHHHHHHhHhcc
Q 014682           76 RFLLGSLNGLLGPI-KAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        76 r~l~G~~~g~~~~~-~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  129 (420)
                      ..+.+++.+...+. .+.+.+..++ +++++.+++.+...++|..+||.++|.+.+
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~  365 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD  365 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666777776665 7777777765 889999999999999999999999999998

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.01  E-value=2.4e-07  Score=89.85  Aligned_cols=121  Identities=17%  Similarity=0.186  Sum_probs=97.6

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchhHHHHHHHHHHHHHHHhhhhh--------HHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVIFNTLFGLSVN--------FWMAV   73 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~--------~~~l~   73 (420)
                      +.+|.++++      ...+...+....-+..++.|.++|+ +||++.+.++.++..++..+.+++..        ....+
T Consensus        16 ~~lg~~~~~------A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l   89 (654)
T TIGR00926        16 NFLGFSEST------STVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDL   89 (654)
T ss_pred             HHcCCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHH
Confidence            456777777      7777777777778888999999996 59999999999999999888776421        22355


Q ss_pred             HHHHHhhhhccchhhh-Hhhhhhhchhh---hhhhHHHHHHHHhHHHHHHHHHHHhHhcc
Q 014682           74 LTRFLLGSLNGLLGPI-KAYACEIFREE---HQALGLSTVSTAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        74 ~~r~l~G~~~g~~~~~-~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  129 (420)
                      ++-.+..+|.|..-|+ .+...|.++++   +|.+.+.++..+.++|+.+++++..++.+
T Consensus        90 ~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~  149 (654)
T TIGR00926        90 LGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRG  149 (654)
T ss_pred             HHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666777789999998 99999998754   46788899999999999999999988875

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.98  E-value=3.8e-08  Score=104.05  Aligned_cols=162  Identities=15%  Similarity=0.079  Sum_probs=112.5

Q ss_pred             hhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 014682          211 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV  290 (420)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (420)
                      ..++++.++...+..++..+...........+....+   +..-+....++..++..+...++++ ..+++.||+|||++
T Consensus         4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~-~~G~l~Dr~grk~~   79 (1146)
T PRK08633          4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAY---DGSEQVILTAIVNALFLLPFLLLSS-PAGFLADKFSKNRV   79 (1146)
T ss_pred             chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHHHHHHhh-hHhhhcccccHHHH
Confidence            4567777777776666655444333333333332221   1222344567777887888888877 77888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhh
Q 014682          291 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP  370 (420)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~  370 (420)
                      +..+.++..+..++..+.....   ....+++..++.+++.....+...+++.+.+|+++|++++|+.+....+|..+||
T Consensus        80 l~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~  156 (1146)
T PRK08633         80 IRIVKLFEVGLTLLIVLAYYLG---WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGT  156 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHH
Confidence            9888766555544443332211   1233445555566777778888899999999999999999999999999999999


Q ss_pred             hhhhHHHHh
Q 014682          371 AGGGALFSW  379 (420)
Q Consensus       371 ~~~g~l~~~  379 (420)
                      .+++.+.+.
T Consensus       157 ~l~~~l~~~  165 (1146)
T PRK08633        157 ALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHh
Confidence            999999876

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.98  E-value=7.4e-08  Score=89.59  Aligned_cols=148  Identities=18%  Similarity=0.192  Sum_probs=129.6

Q ss_pred             CccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 014682          250 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  329 (420)
Q Consensus       250 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (420)
                      ..++++..+-+.+++....+.+++++ -++++.+|+|.|+++..+.++..+..++.++......   + .+++.-++.|+
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~i-P~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~---~-~~~~~R~lqGl  140 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQI-PGGYLADKFGARRVFFISGLISALLTLLTPLAASIGF---Y-LLLVLRFLQGL  140 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHc-CcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcc---h-hhHHHHHHhHH
Confidence            35889999999999999999999988 6778888899999999999999999988888764332   2 45666777778


Q ss_pred             hhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHh-hhhccCCCCCCCchHHHHHHHHHHHHHHH
Q 014682          330 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW-AQKRLDASFLPGSQMVFFVLNVVEAIGVL  408 (420)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~-~~~~~~~~~~~g~~~~f~~~~~~~~~~~~  408 (420)
                      ..+...|....+.++-.|+++|++..++.....++|.+++-++.|.+-+. .          ||+.+|++.+.+.++..+
T Consensus       141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~----------GW~sifY~~g~~g~i~~~  210 (466)
T KOG2532|consen  141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSL----------GWPSIFYVFGIVGLIWFI  210 (466)
T ss_pred             HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCC----------CCchHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999998 4          999999999999888877


Q ss_pred             HHhh
Q 014682          409 MTFK  412 (420)
Q Consensus       409 ~~~~  412 (420)
                      +.+.
T Consensus       211 ~w~~  214 (466)
T KOG2532|consen  211 LWFL  214 (466)
T ss_pred             HHHH
Confidence            6654

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.98  E-value=5.7e-10  Score=99.37  Aligned_cols=150  Identities=14%  Similarity=0.058  Sum_probs=125.9

Q ss_pred             CccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 014682          250 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  329 (420)
Q Consensus       250 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (420)
                      +.++.++...|++.....+..++.++ +.+++.||++|++++..+..+-..+.+...+.      ...+.+.+.=.+.+.
T Consensus        61 ~~fni~~s~~Gll~~vf~v~~~i~sP-l~gyLadryNR~~v~~vG~~iW~~Av~~~~fs------~~Fwq~~l~R~~vGi  133 (493)
T KOG1330|consen   61 TYFNISDSELGLLQTVFIVVFMIASP-LFGYLADRYNRKRVIAVGIFIWTLAVFASGFS------NHFWQVLLCRGFVGI  133 (493)
T ss_pred             HhcCCCchhccchhHHHHHHHHHHHH-HHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcc
Confidence            33789999999999999999999988 88999999999999999888877776665553      223345555666778


Q ss_pred             hhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHH
Q 014682          330 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  409 (420)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~  409 (420)
                      +.....|..+++++|.+|.++|++++++.+....+|..+|-..++.+.+..         +.|++.|.+.+++.++..++
T Consensus       134 GeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~---------~~Wr~af~~~avl~vi~~~L  204 (493)
T KOG1330|consen  134 GEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT---------FWWRWAFRGSAVLGVIVGLL  204 (493)
T ss_pred             chhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc---------cceEEEEEeehHHHHHHHHH
Confidence            899999999999999999999999999999999999999999888888877         24999999999998888777


Q ss_pred             Hhhhhhh
Q 014682          410 TFKPFLA  416 (420)
Q Consensus       410 ~~~~~~~  416 (420)
                      ... +.+
T Consensus       205 ~~~-f~~  210 (493)
T KOG1330|consen  205 VFL-FVR  210 (493)
T ss_pred             HHh-hcc
Confidence            665 443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.98  E-value=8.6e-08  Score=89.04  Aligned_cols=165  Identities=15%  Similarity=0.108  Sum_probs=115.4

Q ss_pred             HHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----chH-HHHHHHHHH
Q 014682          224 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-----GPI-MVARIAGVL  297 (420)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~  297 (420)
                      .++.............|.|+.+      .|++.+++|.+......  .+.++ +.+.+.||+     ||| +.+..+...
T Consensus         7 l~~~~~~~~~~~~~~~~~~l~~------~g~~~~~ig~~~~~~~~--~~~~~-l~g~~~Dr~~~~~~g~rr~~l~~~~~~   77 (402)
T PRK11902          7 LGFASGLPLALTSGTLQAWMTV------EGLDIQTIGFFSLVGQA--YIFKF-LWAPLMDRYTPPLLGRRRGWLLLTQVG   77 (402)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHH--HHHHH-HHHHHHHcccccCCCcchhHHHHHHHH
Confidence            3444445555556677888865      59999999998666443  45556 555666666     555 467776666


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHH
Q 014682          298 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF  377 (420)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  377 (420)
                      ..++.....+.....  ..+ .+....++.+.+.....+...+++.|..|+++|+++.++......+|..+++.+.+.+.
T Consensus        78 ~~l~~~~l~~~~~~~--~~~-~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~  154 (402)
T PRK11902         78 LAASIAAMAFCPPHA--ALW-PLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLA  154 (402)
T ss_pred             HHHHHHHHHhcCccc--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            666555554432111  122 23333334456667778889999999999999999999999988999999999999888


Q ss_pred             HhhhhccCCCCCCCchHHHHHHHHHHHHHHHH
Q 014682          378 SWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  409 (420)
Q Consensus       378 ~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~  409 (420)
                      +..         .||+..|++.+++.++..+.
T Consensus       155 ~~~---------~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        155 DRV---------LGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             hcc---------cCHHHHHHHHHHHHHHHHHH
Confidence            753         18999999988877666554

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.98  E-value=6.1e-08  Score=88.14  Aligned_cols=142  Identities=15%  Similarity=0.202  Sum_probs=109.5

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  331 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (420)
                      .+-.+...|........+.++.- +...++.+|+|+.+++..++.+...-++.+....+      ++.+...-++-+...
T Consensus       401 ~~~~~~LfGv~~a~~~~gEI~~~-ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n------~W~vLPieilqgit~  473 (618)
T KOG3762|consen  401 LGGIKTLFGVVSALCHAGEILFY-FFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQN------PWMVLPIEILQGITH  473 (618)
T ss_pred             cCCcceeeeehhhhhccchHHHH-HHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcC------chheeeHHHHHHHHH
Confidence            56666667766666666666664 47778888899999988888877776666655432      223445556666777


Q ss_pred             HHHHHHHHHHhhhcCCcchhhHHhhHHHHHH-HHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 014682          332 VSIITGLFILQNRAVDQDQRGAANGIAMTGM-SLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  410 (420)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~  410 (420)
                      ..++....++++...||+.+.+++|+..... .+|-.+|.+++|.+.++.          +-+..|..+++.+++..++.
T Consensus       474 aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f----------g~~ttf~~~giAcl~~l~~~  543 (618)
T KOG3762|consen  474 ALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF----------GARTTFRIFGIACLVTLALF  543 (618)
T ss_pred             HHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee----------hhHHHHHHHHHHHHHHHHHH
Confidence            8888899999999999999999999988765 899999999999999998          77888888887777665554

>TIGR00901 2A0125 AmpG-related permease

Probab=98.98  E-value=4.8e-08  Score=89.21  Aligned_cols=153  Identities=16%  Similarity=0.122  Sum_probs=101.7

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----chHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-----GPIMVA-RIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASV  325 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (420)
                      .|+|..+.|..... .+...+ .+ +.+.+.||+     |||+.. ..+.+...+......+....   .....+....+
T Consensus        18 ~g~s~~~~g~~~~~-~~~~~~-~~-~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~---~~l~~l~~~~~   91 (356)
T TIGR00901        18 KNVSLKTIGFFSLV-GLPYSL-KF-LWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS---TDLPLLAGLAF   91 (356)
T ss_pred             cCCCHHHHHHHHHH-HHHHHH-HH-HHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc---hhHHHHHHHHH
Confidence            69999999998655 444444 55 444555554     677764 45555555554444333221   11222333333


Q ss_pred             HHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHH
Q 014682          326 VKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAI  405 (420)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~  405 (420)
                      +.+.......+...+++.|.+|+++|+.+.|+......+|..+++.+.+.+.+..+...  ....+|+..|++.+++.++
T Consensus        92 ~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~--~~~~~wr~~f~i~ai~~l~  169 (356)
T TIGR00901        92 LIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT--GLITLWGYIFFWTALLILP  169 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--ccccccHHHHHHHHHHHHH
Confidence            44455666778888999999999999999999999999999999999999988763111  0111499999998887777


Q ss_pred             HHHHHhh
Q 014682          406 GVLMTFK  412 (420)
Q Consensus       406 ~~~~~~~  412 (420)
                      ..+..++
T Consensus       170 ~~~~~~~  176 (356)
T TIGR00901       170 GLLVTLF  176 (356)
T ss_pred             HHHHHHH
Confidence            6655443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.94  E-value=1.1e-07  Score=88.49  Aligned_cols=165  Identities=13%  Similarity=0.031  Sum_probs=111.5

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH----hhchHHHHHHH-HHHHHHHHHHHHHHHHhh----------hhHH
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLER----ILGPIMVARIA-GVLTIPLLTSYPYIAMLS----------GFGL  316 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~  316 (420)
                      +|.+....+.+.....+...+.++ +.++++|    |+|||+..... .....++..++++.....          ....
T Consensus        34 lg~~~~~~~~i~~~~~l~~~i~~P-i~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~  112 (477)
T TIGR01301        34 LGIPHAWASIIWLCGPLSGLLVQP-LVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPR  112 (477)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHh-HeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhH
Confidence            789999999999999999999988 5666676    58998887765 444445545554433211          0001


Q ss_pred             -HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchh--hHHhhHHHHHHHHHHHHhhhhhhHH--HHhhh---hccCCCC
Q 014682          317 -AFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQR--GAANGIAMTGMSLFKAAGPAGGGAL--FSWAQ---KRLDASF  388 (420)
Q Consensus       317 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~~g~~~g~~~~g~l--~~~~~---~~~~~~~  388 (420)
                       .........+..+......+...+++.|..|+++|  +.+.+..+...++|+.+|+.+++..  .+...   .......
T Consensus       113 ~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~  192 (477)
T TIGR01301       113 AIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVS  192 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccc
Confidence             11122222233445566777788999999998865  6899999999999999999999875  22211   1111111


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhhhhhhcc
Q 014682          389 LPGSQMVFFVLNVVEAIGVLMTFKPFLAQR  418 (420)
Q Consensus       389 ~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  418 (420)
                      ..+++..|++.+++.+++.++... ..||+
T Consensus       193 ~~~~~~~F~i~a~~l~i~~l~t~~-~v~E~  221 (477)
T TIGR01301       193 CANLKSCFLIDIILLAILTYIALS-AVKEN  221 (477)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHee-eeecc
Confidence            226788999999888888888776 55553

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09848 glucuronide transporter; Provisional

Probab=98.93  E-value=2.1e-08  Score=94.61  Aligned_cols=112  Identities=16%  Similarity=0.123  Sum_probs=92.9

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHhhhhccchhhh-Hhhhh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYAC   94 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~-~~~i~   94 (420)
                      .++......++..++.++++++.||+|+|+++..+.++..++.+...+.+  +++.+++..++.|+|.+...+. .++.+
T Consensus       266 ~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~  345 (448)
T PRK09848        266 TVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEA  345 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444545677888999999999999999999999988888877776643  6677777788899998888777 88888


Q ss_pred             hhchhh-------hhhhHHHHHHHHhHHHHHHHHHHHhHhcc
Q 014682           95 EIFREE-------HQALGLSTVSTAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        95 ~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  129 (420)
                      |..|++       ++|..++..+....+|..+|+.+.+.+.+
T Consensus       346 ~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~  387 (448)
T PRK09848        346 DTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG  387 (448)
T ss_pred             HhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888754       35888999999999999999999998876

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.92  E-value=1.2e-08  Score=99.47  Aligned_cols=162  Identities=12%  Similarity=-0.001  Sum_probs=123.1

Q ss_pred             cCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhh--------------
Q 014682          248 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG--------------  313 (420)
Q Consensus       248 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  313 (420)
                      ..++++++..+.|.+.+...++..+..+ ...++.||.+|++.+..+.++..++.+++.+.+...+              
T Consensus        59 iek~F~lss~~~G~i~s~~~i~~~~~~i-~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~  137 (633)
T TIGR00805        59 IERRFKLSTSSSGLINGSYEIGNLLLII-FVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNL  137 (633)
T ss_pred             hhhhhCCCCCcceeeeehhhHHHHHHHH-HHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccc
Confidence            3455899999999999999999999988 5667777889999999999998888877765431100              


Q ss_pred             -------------------------------hHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHH
Q 014682          314 -------------------------------FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM  362 (420)
Q Consensus       314 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  362 (420)
                                                     ...+..+++.-++.+++.....+...+++.|.+|+++|+.+.|+.+...
T Consensus       138 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~  217 (633)
T TIGR00805       138 SSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIA  217 (633)
T ss_pred             cccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHH
Confidence                                           1124455667778888888889999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhHHHHhhhhccC-----------CCC-CCCchHHHHHHHHHHHHHHHHH
Q 014682          363 SLFKAAGPAGGGALFSWAQKRLD-----------ASF-LPGSQMVFFVLNVVEAIGVLMT  410 (420)
Q Consensus       363 ~~g~~~g~~~~g~l~~~~~~~~~-----------~~~-~~g~~~~f~~~~~~~~~~~~~~  410 (420)
                      .+|..+|+.+++.+.+...+...           .+. .++|+..|++.+++.++..+..
T Consensus       218 ~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l  277 (633)
T TIGR00805       218 VFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF  277 (633)
T ss_pred             HhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999876532110           000 1136677888777776655443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.91  E-value=6.5e-09  Score=97.98  Aligned_cols=155  Identities=9%  Similarity=-0.046  Sum_probs=119.2

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhh----------hhHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS----------VNFWMA   72 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~----------~~~~~l   72 (420)
                      +++|.++.+      .|.+.+...++.+++....+++.+|++.|+++.++.++.+++.+.....          ++.+..
T Consensus       281 ~~lG~s~~~------~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~  354 (468)
T TIGR00788       281 QCLPGGPSF------SGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFV  354 (468)
T ss_pred             ccCCCCcch------hhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeee
Confidence            467888888      9999999999999999999999999999999999999999888665321          333445


Q ss_pred             HHHHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccc-cccCccch
Q 014682           73 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES-LFGKFPYF  150 (420)
Q Consensus        73 ~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~-~~~~~~~~  150 (420)
                      ...-++.+++.+..... ..++.+..|++++++.+++.....++|..+++.+++.+.+       .+|-.. .+ +.-|.
T Consensus       355 ~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~-------~~g~~~~~~-~~~~~  426 (468)
T TIGR00788       355 LGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME-------TIGITCDNS-NNLWL  426 (468)
T ss_pred             eehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCcccc-cchHH
Confidence            55577888887776555 9999999999999999999999999999999999999998       444221 12 22233


Q ss_pred             HHHHHHHHHHHHHHHHHHhccc
Q 014682          151 LPCLCISLFAFGVTIAAFWLPE  172 (420)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~l~e  172 (420)
                       ...+..+..++.+...+.+|+
T Consensus       427 -~i~i~~~~~l~~l~~~~llP~  447 (468)
T TIGR00788       427 -LILGHSLAPLLPLPLLHLLPR  447 (468)
T ss_pred             -HHHHHHHHHHHHHHHHHhCCC
Confidence             233444444444445567886

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.90  E-value=2.6e-08  Score=90.17  Aligned_cols=185  Identities=13%  Similarity=0.044  Sum_probs=140.3

Q ss_pred             hcc-chhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHH
Q 014682          212 LLK-NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPIM  289 (420)
Q Consensus       212 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  289 (420)
                      .++ .|.++.....-+.--+.+.+....+..|++...... +|+|++++..+++.++...-...+ +++|+.|| .|+|+
T Consensus        16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g-Lg~~~~~A~~l~~~y~slVY~t~i-~GG~laDr~LG~~~   93 (498)
T COG3104          16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG-LGFDETHATGLFSAYGSLVYLTPI-IGGWLADRVLGTRR   93 (498)
T ss_pred             cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc-CCcChHhhHHHHHHHHHHHHHHHH-HHHHHHHHhcchhH
Confidence            344 445566666666666777777788888888775444 789999998888887777766656 78888887 69999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcc--hhhHHhhHHHHHHHHHHH
Q 014682          290 VARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD--QRGAANGIAMTGMSLFKA  367 (420)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~  367 (420)
                      .+..+.++..++.+.+......    ....+.+...+...+.+.+=+....++.|.+|++  +|-.++++.....++|+.
T Consensus        94 tI~lGail~~iGh~~L~~~~~~----~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl  169 (498)
T COG3104          94 TIVLGAILMAIGHLVLAISSVS----GPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSL  169 (498)
T ss_pred             HHHHHHHHHHHHHHHHhccccc----cccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHH
Confidence            9999999999998887665300    0112333333334566777788889999988754  467778888888899999


Q ss_pred             HhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          368 AGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       368 ~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      ++|.+.+++.++.          ||...|...++-+.++.+..+.
T Consensus       170 ~~p~i~~~~~~~~----------g~~~gF~~aavGm~~gl~~f~~  204 (498)
T COG3104         170 IAPIITGLLAINY----------GWHVGFGLAAVGMIIGLVIFLL  204 (498)
T ss_pred             HHHHHHHHHHHhh----------CHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998          8999999999999888777665

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.90  E-value=1.3e-08  Score=84.82  Aligned_cols=122  Identities=20%  Similarity=0.258  Sum_probs=96.5

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV-VIFNTLFGLSVNFWMAVLTRFLLG   80 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~r~l~G   80 (420)
                      ++.||+|+.+      .+.+.+.-..-.++.+++.|.++||+|++...+.+..+. .++-....++  ++.=.++..+.|
T Consensus       292 ~~rfGlS~~~------a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lG  363 (459)
T KOG4686|consen  292 QKRFGLSAVS------AGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLG  363 (459)
T ss_pred             HHhhCCChhh------ccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHh
Confidence            5789999999      899999988889999999999999999998887665444 3333333332  222334556778


Q ss_pred             hhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhcccc
Q 014682           81 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  131 (420)
Q Consensus        81 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  131 (420)
                      +........ ...++...|+++.|++.+..+...++|..+.|++++.+.+..
T Consensus       364 LsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~  415 (459)
T KOG4686|consen  364 LSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD  415 (459)
T ss_pred             hhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC
Confidence            876665554 667788889999999999999999999999999999999844

>PTZ00207 hypothetical protein; Provisional

Probab=98.90  E-value=4.7e-07  Score=86.29  Aligned_cols=149  Identities=17%  Similarity=0.096  Sum_probs=99.5

Q ss_pred             CccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 014682          250 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  329 (420)
Q Consensus       250 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (420)
                      +++|++..+.+.+.+.. ......++ ..+++.||+|+|+++.++.++..++.+...+............+.+...+.+.
T Consensus        55 ~~lgls~~~l~~i~svg-~~~g~~~l-p~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~  132 (591)
T PTZ00207         55 ARYNLTQRDLSTITTVG-IAVGYFLL-PYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTL  132 (591)
T ss_pred             HHhCcCHHHHHHHHHHH-HHHHHHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence            34899999999888763 33334444 56899999999999999999999888877664221000122223333444445


Q ss_pred             hhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHH
Q 014682          330 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  409 (420)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~  409 (420)
                      +.....+.......+.+| ++||++.|+......+|+++.+.+...+.+.           +++..|++.+.+.++..++
T Consensus       133 G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-----------~~~~~fl~l~vl~~vv~ll  200 (591)
T PTZ00207        133 GCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD-----------NTSAYFFFLMSFALVVGIL  200 (591)
T ss_pred             HHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHH
Confidence            555566666677777776 8899999999999999998655555544431           4556677777666665554


Q ss_pred             Hhh
Q 014682          410 TFK  412 (420)
Q Consensus       410 ~~~  412 (420)
                      ...
T Consensus       201 ~~~  203 (591)
T PTZ00207        201 AIV  203 (591)
T ss_pred             HHh
Confidence            443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.90  E-value=1.3e-07  Score=78.34  Aligned_cols=352  Identities=12%  Similarity=0.068  Sum_probs=175.5

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL   82 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~   82 (420)
                      +++|....|      +|.+.-+.+-..++...+.|.++|+-|||+.-+.-++...++++ .-.++++-.++++|.+-|+.
T Consensus        65 stYgFgkG~------IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGia  137 (454)
T KOG4332|consen   65 STYGFGKGD------IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIA  137 (454)
T ss_pred             hhcCccCCc------cceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHH
Confidence            356667777      78877777778888889999999999999986655555555443 34578899999999999999


Q ss_pred             ccchhhh-H-hhhhhhchhhh-----hhhHHHHHH-HHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHH
Q 014682           83 NGLLGPI-K-AYACEIFREEH-----QALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL  154 (420)
Q Consensus        83 ~g~~~~~-~-~~i~~~~~~~~-----r~~~~~~~~-~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~  154 (420)
                      .+....+ . =++.|.-+++.     .+.-++-.. .+..+-.+++.+.+..+.+       .+       ..+...++-
T Consensus       138 TsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd-------~~-------slGPVAPFd  203 (454)
T KOG4332|consen  138 TSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVD-------TF-------SLGPVAPFD  203 (454)
T ss_pred             HHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHH-------Hh-------ccCCCCchH
Confidence            8887776 4 46777653321     111111111 2333334444455555554       11       112222333


Q ss_pred             HHHHHH-HHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhh
Q 014682          155 CISLFA-FGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM  233 (420)
Q Consensus       155 ~~~~~~-~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (420)
                      ..+... +...+..---.|.-    .+..+.++.              ..+-+...+.+..|+++...-..-.++-....
T Consensus       204 AAacfLaigmAvil~~W~ENy----gdps~~kdl--------------ltqf~gaa~aiaSD~ki~LLG~iqsLFE~smy  265 (454)
T KOG4332|consen  204 AAACFLAIGMAVILSSWSENY----GDPSENKDL--------------LTQFKGAARAIASDEKIALLGAIQSLFEGSMY  265 (454)
T ss_pred             HHHHHHHHHHHHHHhhhhhcc----CChhhhHHH--------------HHHhhHhHHHHhcchHHHHHHHHHHHHhhhhh
Confidence            222222 21122111111111    111111111              00111223445566665443333332221111


Q ss_pred             hHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHHH-h
Q 014682          234 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP-IMVARIAGVLTIPLLTSYPYIAM-L  311 (420)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~  311 (420)
                      .+     .++.+|....  +-...--|.+++...+..++++-+..+.+.++-.+ ...+.+.+......+.+...... .
T Consensus       266 tF-----VFLWTPaLsp--n~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vs  338 (454)
T KOG4332|consen  266 TF-----VFLWTPALSP--NDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVS  338 (454)
T ss_pred             ee-----eeeecccCCC--CcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccC
Confidence            11     2333332111  11112247788888888888887555666654222 22333333333333222222111 1


Q ss_pred             hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCC
Q 014682          312 SGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPG  391 (420)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g  391 (420)
                      ++......-++....+-...+..+|...-+-++..|++.|++.+-....=-++-..++      +++. +....+   .+
T Consensus       339 P~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClv------Lynl-h~~~~p---~~  408 (454)
T KOG4332|consen  339 PSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLV------LYNL-HVDAFP---TT  408 (454)
T ss_pred             CCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhh------heec-ccccCc---cc
Confidence            1111111122333333445567788999999999999999887755433223332222      2221 111111   14


Q ss_pred             chHHHHHHHHHHHHHHHHH
Q 014682          392 SQMVFFVLNVVEAIGVLMT  410 (420)
Q Consensus       392 ~~~~f~~~~~~~~~~~~~~  410 (420)
                      -+..|-+++.+..++.+..
T Consensus       409 tr~mf~icS~~~~~a~i~~  427 (454)
T KOG4332|consen  409 TRNMFGICSAFLFVASILQ  427 (454)
T ss_pred             cchhhhhhHHHHHHHHHHH
Confidence            5567777777777665543

>TIGR00896 CynX cyanate transporter

Probab=98.89  E-value=8e-08  Score=87.70  Aligned_cols=139  Identities=17%  Similarity=0.095  Sum_probs=101.2

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 014682          251 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL  330 (420)
Q Consensus       251 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (420)
                      ++|++..+.+...+...++..++++ ..+++.||+++|+.+..+..+..++.+.. ..+     . ...+.+..++.+++
T Consensus        29 ~~~~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~-----~-~~~l~~~~~~~g~g  100 (355)
T TIGR00896        29 ALGMSFSVAGLLTALPVLCFAVLAP-LAPWLARRFGEERSVAAGLLLIAAGILIR-SAP-----G-TALLFAGTALIGVG  100 (355)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc-----c-HHHHHHHHHHHHHH
Confidence            3799999999999999999999988 77888888999999888877666555443 211     1 11223334444444


Q ss_pred             hHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHH
Q 014682          331 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIG  406 (420)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~  406 (420)
                      .....+.......+..| ++|+++.++.+....+|..+++.+.+.+.+....        +|+..|...+++.++.
T Consensus       101 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~--------~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896       101 IAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGG--------HWQQALAWWALPALLA  167 (355)
T ss_pred             HHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHHHHHHHH
Confidence            44555556667777665 7899999999999999999999999998876520        3888887776655444

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.88  E-value=7.5e-09  Score=97.37  Aligned_cols=148  Identities=15%  Similarity=0.242  Sum_probs=125.0

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcC--CchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG   80 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G--rk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G   80 (420)
                      ++.+.++.+      ...+.++..+...++.+..|+++|+..  ++.+..++++..+++.+..+++++++.++..-.+.|
T Consensus       326 ~~~g~~~~~------aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG  399 (509)
T KOG2504|consen  326 KSLGLSSND------AAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFG  399 (509)
T ss_pred             hhcCCChhh------hHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            467788888      999999999999999999999999988  456667888888999999999999999999999999


Q ss_pred             hhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHH
Q 014682           81 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF  159 (420)
Q Consensus        81 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  159 (420)
                      ++.|..... ...+.|..+.++-+.+.|+.....+++..+||++++.+.+..++               |...+...++.
T Consensus       400 ~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~---------------Y~~~f~~~g~~  464 (509)
T KOG2504|consen  400 FCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGN---------------YDHAFYFCGLC  464 (509)
T ss_pred             HHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCC---------------eeeehhhcChH
Confidence            999998887 67899999999999999999999999999999999998883322               33333566666


Q ss_pred             HHHHHHHHHhcc
Q 014682          160 AFGVTIAAFWLP  171 (420)
Q Consensus       160 ~~~~~~~~~~l~  171 (420)
                      .++....++..|
T Consensus       465 ~~~s~~~~~~~~  476 (509)
T KOG2504|consen  465 FLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHHHhH
Confidence            665555555555

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.87  E-value=4.6e-08  Score=88.29  Aligned_cols=147  Identities=24%  Similarity=0.263  Sum_probs=119.3

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhh-Hhh
Q 014682           14 IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAY   92 (420)
Q Consensus        14 ~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~   92 (420)
                      .+...|.+.+...+.-++.-.+..++.+|+|.|+.++++..++.+=.++++++++.+.+.+.+.+.|+-.+..... ..|
T Consensus       257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY  336 (412)
T PF01306_consen  257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY  336 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445899999999999999999999999999999999999999999999999999999999999999998887776 999


Q ss_pred             hhhhchhhhhhhHHHHH-HHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHH-HHHHHhc
Q 014682           93 ACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWL  170 (420)
Q Consensus        93 i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l  170 (420)
                      +++.+|+|-.++...+. +.+.++|.++.+.++|.+.|                +.+++..+.+.+...+.. ++..+.+
T Consensus       337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd----------------~~G~~~tylimg~iv~~~~li~~f~l  400 (412)
T PF01306_consen  337 ITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD----------------RIGFQHTYLIMGLIVLPFTLISAFTL  400 (412)
T ss_dssp             HHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh----------------hcCcHHHHHHHHHHHHHHHHHheeee
Confidence            99999999888888874 78999999999999999999                444555556666665554 4556666


Q ss_pred             ccccCC
Q 014682          171 PETLHR  176 (420)
Q Consensus       171 ~e~~~~  176 (420)
                      +++++.
T Consensus       401 ~~~~~~  406 (412)
T PF01306_consen  401 KKDKKQ  406 (412)
T ss_dssp             --SSST
T ss_pred             cCCCcc
Confidence            655443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.84  E-value=1.4e-07  Score=89.25  Aligned_cols=146  Identities=12%  Similarity=0.068  Sum_probs=97.7

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  331 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (420)
                      .|-+ ....++.....+...+... +.+.++|.+|||.....+.++..++.+......+.+      .++....+.+++ 
T Consensus        74 iG~~-~~~~w~~~~~~l~~av~~~-~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~------~~iag~~l~Gvg-  144 (599)
T PF06609_consen   74 IGGS-DNWSWFSTAWTLASAVSFP-FVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMN------TFIAGMVLYGVG-  144 (599)
T ss_pred             cCCC-ccchHHHHHHHHHHHHHHH-hhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHH------HHHHHHHHHHHh-
Confidence            4544 3445566666677777666 788999999999999999999999988876654433      233344444443 


Q ss_pred             HHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014682          332 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~  411 (420)
                      .+........++|..|.+.|+.+.++.....-.....+|.+...+....          +||+.|++..++..++.+..+
T Consensus       145 aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~----------~WRw~~~~~~i~~~i~~vl~~  214 (599)
T PF06609_consen  145 AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHS----------GWRWIFYIFIIWSGIALVLIF  214 (599)
T ss_pred             hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCC----------CcchHHHHHHHHHHHHHHHHH
Confidence            4445556667899999999988877666544444445555554443332          899999999887777765544


Q ss_pred             hhhhh
Q 014682          412 KPFLA  416 (420)
Q Consensus       412 ~~~~~  416 (420)
                      +.+.|
T Consensus       215 ~fY~P  219 (599)
T PF06609_consen  215 FFYFP  219 (599)
T ss_pred             HHhCC
Confidence            32333

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.83  E-value=1.1e-07  Score=87.66  Aligned_cols=151  Identities=17%  Similarity=0.210  Sum_probs=108.6

Q ss_pred             cccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhh---hHH------HHHH
Q 014682            4 DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV---NFW------MAVL   74 (420)
Q Consensus         4 ~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~---~~~------~l~~   74 (420)
                      +-|++.++      ..+......+...+.++++..+.||+|||+.++.+..+..+..++.....   +..      ..++
T Consensus       299 ~aG~~~~~------a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~  372 (485)
T KOG0569|consen  299 TAGFTPEE------AQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIA  372 (485)
T ss_pred             HcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            45777777      88888899999999999999999999999999999999998888776642   111      1234


Q ss_pred             HHHHhhhhccc-hhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHH
Q 014682           75 TRFLLGSLNGL-LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP  152 (420)
Q Consensus        75 ~r~l~G~~~g~-~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~  152 (420)
                      +.++..++.+. ..|. .-+.+|.+|++.|+.++++.....-+...+-...-..+.+       .+|-          ..
T Consensus       373 ~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~-------~~g~----------~~  435 (485)
T KOG0569|consen  373 AIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQN-------VIGP----------YV  435 (485)
T ss_pred             HHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hhcc----------hh
Confidence            44444444332 3455 8899999999999999999988888887776666555555       2221          11


Q ss_pred             HHHHHHHHHH-HHHHHHhcccccCCC
Q 014682          153 CLCISLFAFG-VTIAAFWLPETLHRH  177 (420)
Q Consensus       153 ~~~~~~~~~~-~~~~~~~l~e~~~~~  177 (420)
                      +++..++.+. .+..++.+||++.+.
T Consensus       436 filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  436 FILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             hHHHHHHHHHHHHHHHHhCcccCCCC
Confidence            2344444444 556788999987543

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.82  E-value=1.4e-07  Score=80.93  Aligned_cols=361  Identities=14%  Similarity=0.027  Sum_probs=200.9

Q ss_pred             HHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhhHhhhhhhchhhhhhhH
Q 014682           26 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALG  105 (420)
Q Consensus        26 ~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~  105 (420)
                      .-.+.+.-.+.=.+.|..-.|++++.-.+.......+.-+.++.+.+=+.-++.|...+.-..-++++-+..+|+++.++
T Consensus        52 TYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrv  131 (433)
T KOG3810|consen   52 TYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRV  131 (433)
T ss_pred             hHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHH
Confidence            33455666667789999989999998888888888888899999999989999888766655458999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCccc
Q 014682          106 LSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCD  185 (420)
Q Consensus       106 ~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~  185 (420)
                      .+.-.++.-.|-..|..++-.+....              ..++.....+......+.....+++|..++...-++++++
T Consensus       132 t~y~RaA~L~g~~~g~vlaQlLvs~~--------------~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~  197 (433)
T KOG3810|consen  132 TGYCRAAFLVGKFVGSVLAQLLVSLE--------------TLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDK  197 (433)
T ss_pred             HHHhHHHHHHHhHHHhHHHHHHhhhc--------------ccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhccccc
Confidence            99999999999999999998888621              3344455555555555566677888876643221111111


Q ss_pred             chhHhhhhhhhhhhhh------hcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhH
Q 014682          186 VSYDALESASAEVKEE------EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMV  259 (420)
Q Consensus       186 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (420)
                      ....+.++...+.+..      ...-..+..+..+||.++.-.+-+.+.........++. ..+.+...   -+-.....
T Consensus       198 ~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~-Q~LW~~~~---~~~~~vyN  273 (433)
T KOG3810|consen  198 ISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYT-QILWKEVA---PNPANVYN  273 (433)
T ss_pred             ceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHH-HHHHHhhC---CCchhhhc
Confidence            1111111111100000      00001123445566666544444443333322222111 12211110   11122223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 014682          260 GEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLF  339 (420)
Q Consensus       260 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (420)
                      |..=.+..+.+.++.+ ..+.+.-.+.|..-+.++.....-+.+++ ++...   ...++..+..++.........++..
T Consensus       274 G~veAv~tlLGa~~~~-~~g~l~i~w~r~g~~ll~~~s~~~agllf-~m~~t---~~Iw~~Ya~yvlfr~~y~l~itiA~  348 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAAL-AAGYLNINWNRWGDLLLAVGSAVQAGLLF-IMAQT---QHIWVCYAGYVLFRVIYQLTITIAT  348 (433)
T ss_pred             CHHHHHHHHHHHHHHH-HHHheeeccchhhHHHHHHHHHHhhhhhh-hhhcc---cceehhhhhHHHHHhhHhhhhhHHH
Confidence            4444555566666666 55555444444433333322222222222 22211   1233344444444444455566666


Q ss_pred             HHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCC-CCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          340 ILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDAS-FLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       340 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~-~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      ..+++....+.-|..+|++..+.-+-+.+-..+   +.|..+-..... ...-+..-|.+.+.+.+++..+.+.
T Consensus       349 ~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~  419 (433)
T KOG3810|consen  349 FQIARNLSSELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYL  419 (433)
T ss_pred             HHHHHhhhhhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHH
Confidence            667777888999999999887766555544433   233221111110 0002445577788888887665544

>TIGR01272 gluP glucose/galactose transporter

Probab=98.82  E-value=5.3e-08  Score=86.60  Aligned_cols=117  Identities=15%  Similarity=0.131  Sum_probs=94.7

Q ss_pred             cccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhc
Q 014682            4 DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLN   83 (420)
Q Consensus         4 ~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   83 (420)
                      ++|.++++      .+...+.+..+..++.+..+++.||+|+||++..+..+..++.++....++...+ ..-++.|++.
T Consensus       172 ~~g~s~~~------a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~  244 (310)
T TIGR01272       172 ALGLPEDQ------AAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFN  244 (310)
T ss_pred             cCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHH
Confidence            46888888      9999999999999999999999999999999988888888777666555543333 3455788998


Q ss_pred             cchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhcc
Q 014682           84 GLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        84 g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  129 (420)
                      +...|. .+...+..|++ .+++.++. ....+|.++.|++.|.+.|
T Consensus       245 s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad  289 (310)
T TIGR01272       245 SIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLAD  289 (310)
T ss_pred             HHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence            988887 88888887754 45666665 5667899999999999998

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.82  E-value=5.9e-08  Score=89.00  Aligned_cols=146  Identities=19%  Similarity=0.277  Sum_probs=110.1

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhh-hhHHHHHHH----HHHhhhhccchhhh-Hh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-VNFWMAVLT----RFLLGSLNGLLGPI-KA   91 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~----r~l~G~~~g~~~~~-~~   91 (420)
                      .+.+.++..++=...-...+++..|+|.|+++.++.+..++=..+.+.. ++.+...+.    ..++|+..+...++ ..
T Consensus       245 ~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~  324 (400)
T PF03825_consen  245 IGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVR  324 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            6777777777777888889999999999999999999999988888887 554443333    45699998888887 99


Q ss_pred             hhhhhchhhhhhhHHHHHHH-HhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHH-HHHHHh
Q 014682           92 YACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFW  169 (420)
Q Consensus        92 ~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  169 (420)
                      ++.+..|++.|+++.++++. ..++|..+|..++|++.+       .+|-+..+ +  |...+.+.++..++. ++.+++
T Consensus       325 yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~-------~~g~~~~~-~--~~~~~~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  325 YIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYD-------AFGARGMF-D--WSAVFLVFAVMALVILVLFVIL  394 (400)
T ss_pred             HHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------Hhcchhhh-h--HHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999875 578999999999999999       55555444 1  333334444444443 333444


Q ss_pred             cccc
Q 014682          170 LPET  173 (420)
Q Consensus       170 l~e~  173 (420)
                      .+|+
T Consensus       395 fk~~  398 (400)
T PF03825_consen  395 FKPK  398 (400)
T ss_pred             ccCC
Confidence            4443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.82  E-value=1.4e-07  Score=82.21  Aligned_cols=118  Identities=14%  Similarity=0.040  Sum_probs=93.4

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhH
Q 014682          253 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSV  332 (420)
Q Consensus       253 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (420)
                      +-+....|++-+.+.+...+.+. ..+.++|++|||+++..+.+...+...+.....+.      ..+...=+..|.+ .
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS~-~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F------~afv~aR~l~Gi~-k  135 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISSP-LWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF------AAFVLARFLGGIF-K  135 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhhh-hhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhc-c
Confidence            45667788999999999999988 67788888999999999998888877666554321      1122223333333 4


Q ss_pred             HHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHH
Q 014682          333 SIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFS  378 (420)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  378 (420)
                      +-.....++++|.+++++|+.+++..++..++|-++||.++|++..
T Consensus       136 gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  136 GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            5566788999999999999999999999999999999999999998

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.80  E-value=1.3e-06  Score=77.25  Aligned_cols=187  Identities=9%  Similarity=-0.052  Sum_probs=132.7

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 014682          221 SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  300 (420)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (420)
                      ....++++.+.........|.. .+.     ++.+..+++.+......+-.+.++ ..+++.||++.|+-+..++.++++
T Consensus        18 ~t~lFfl~G~~~~l~diLip~l-~~~-----f~ls~~~a~liqfaff~gYf~~~l-pa~~~~kk~gyk~gi~lgL~l~av   90 (422)
T COG0738          18 LTSLFFLWGFITCLNDILIPHL-KEV-----FDLTYFEASLIQFAFFGGYFIMSL-PAGLLIKKLGYKAGIVLGLLLYAV   90 (422)
T ss_pred             HHHHHHHHHHHhhcchhhHHHH-HHH-----hCccHHHHHHHHHHHHHHHHHHhc-cHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3333444444444444444433 333     789999999999998888888877 778888899999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhh
Q 014682          301 LLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  380 (420)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  380 (420)
                      ++.++.-....   ..+..+....++.+.+........+.++..+.|++....=+.+.+.++.+|+.++|.+++.+....
T Consensus        91 g~~lF~pAa~~---~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~  167 (422)
T COG0738          91 GAALFWPAASS---KSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSG  167 (422)
T ss_pred             HHHHHhhhhhh---hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            98887544332   223334444555566677778888899999999988999999999999999999999999998841


Q ss_pred             hh---------ccCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhc
Q 014682          381 QK---------RLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ  417 (420)
Q Consensus       381 ~~---------~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  417 (420)
                      ..         .........++.++...+...++..+.....+.|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~  213 (422)
T COG0738         168 VALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPD  213 (422)
T ss_pred             hhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCc
Confidence            00         00001112577888888887777766665534454

>PRK09669 putative symporter YagG; Provisional

Probab=98.77  E-value=1.4e-07  Score=88.89  Aligned_cols=170  Identities=10%  Similarity=0.011  Sum_probs=109.1

Q ss_pred             hHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hch-HHHHHHHHHHHHHHHHHHHHH
Q 014682          234 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI----LGP-IMVARIAGVLTIPLLTSYPYI  308 (420)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~  308 (420)
                      ....+++.|+.+.     +|+++.++|.+..+.-+...+..+ +.+++.||    +|| |+.+..+.....+...+....
T Consensus        27 ~~~~~l~~~~t~~-----~gls~~~~g~i~~i~~i~dai~dp-~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~  100 (444)
T PRK09669         27 TVMLFLAYFYTDV-----FGLSAAIMGTMFLVVRVLDAVTDP-LMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYT  100 (444)
T ss_pred             HHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHcccc-eeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhC
Confidence            3344566666655     899999999999999999999988 56666666    455 455556655555555443333


Q ss_pred             HHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC-CcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCC
Q 014682          309 AMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV-DQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDAS  387 (420)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~  387 (420)
                      +..+.........+...+.............++.+|.. ++++|.+..+.......+|+.+++.+...+....++.... 
T Consensus       101 p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~-  179 (444)
T PRK09669        101 PDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQ-  179 (444)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-
Confidence            22111112222333333333344455666677888876 5688999999999999999999888777776655321111 


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          388 FLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       388 ~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                        .+|...+.+.+++.++..+..+.
T Consensus       180 --~g~~~~~~i~~ii~~v~~~~~~~  202 (444)
T PRK09669        180 --KGYFYAMMVMGLLGVVLFFCCFF  202 (444)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHhC
Confidence              26777787777777766655544

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.77  E-value=2.5e-07  Score=87.77  Aligned_cols=179  Identities=10%  Similarity=0.020  Sum_probs=112.0

Q ss_pred             hhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH----hhch-HHHHHHHHHHHHHHHHH
Q 014682          230 LHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER----ILGP-IMVARIAGVLTIPLLTS  304 (420)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~  304 (420)
                      ........+++.|+.+.     .|.++..+|.++.+.-+...+..+ +.+.++|    |+|| |+.+..+.....+...+
T Consensus        20 ~~~~~~~~~l~~yyt~v-----~Gls~~~vg~i~~i~ri~dai~dp-~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~l   93 (473)
T PRK10429         20 FAIGIVYMYLMYYYTDV-----VGLSVGLVGTLFLVARIWDAINDP-IMGWIVNNTRSRWGKFKPWILIGTLANSVVLFL   93 (473)
T ss_pred             HHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHhhc-hheeehhcCCCCCCCcchhHhhhhHHHHHHHHH
Confidence            33344445666777665     799999999999999999999988 5566666    3466 66666676666666544


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC-CcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhc
Q 014682          305 YPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV-DQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKR  383 (420)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~  383 (420)
                      +...+..+.........+...+...+.........++..|.. ++++|.+..+......++|+.+.+.+...+.+..+..
T Consensus        94 lf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~  173 (473)
T PRK10429         94 LFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGG  173 (473)
T ss_pred             HHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            433221111112222333333444555566667778888887 6899999999877888888777777666655443321


Q ss_pred             cCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhcc
Q 014682          384 LDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQR  418 (420)
Q Consensus       384 ~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  418 (420)
                      +..   .++.....+.+++.+++.+..+. ..||+
T Consensus       174 ~~~---~g~~~~~~i~~~~~~~~~~~~~~-~~~e~  204 (473)
T PRK10429        174 DRG---FGFQMFTLVLIAFFIVSTIITLR-NVHEV  204 (473)
T ss_pred             chh---hhHHHHHHHHHHHHHHHHHHHHc-Cceec
Confidence            111   14666666666666665555544 34443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.75  E-value=1.2e-07  Score=84.58  Aligned_cols=109  Identities=24%  Similarity=0.385  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhh----hcCCchhHHHH-HHHHHHHHHHHhhhhhHHH------------HHHHHHHhh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVAD----RYGRKPVIIMG-TASVVIFNTLFGLSVNFWM------------AVLTRFLLG   80 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~d----r~Grk~~l~~~-~~~~~~~~~~~~~~~~~~~------------l~~~r~l~G   80 (420)
                      .+.+--...+...+.+|+.|..+|    ||||||.++.. .....++.++..++.++..            ..+.-++.|
T Consensus        69 ~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg  148 (498)
T KOG0637|consen   69 SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILG  148 (498)
T ss_pred             ccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHH
Confidence            566666667777889999999999    58988887654 5555666777777654432            223334444


Q ss_pred             h-----hc-cchhhhHhhhhhhchhhhhhh-HHHHHHHHhHHHHHHHHHHHhH
Q 014682           81 S-----LN-GLLGPIKAYACEIFREEHQAL-GLSTVSTAWGIGLIIGPALGGF  126 (420)
Q Consensus        81 ~-----~~-g~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~~g~~l~~~  126 (420)
                      +     +. -...|+.+++.|...++++.+ +++.+.....+|..+|..++++
T Consensus       149 ~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y  201 (498)
T KOG0637|consen  149 FWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY  201 (498)
T ss_pred             hHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence            3     33 345677999999998766666 9999999999999999888863

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.74  E-value=3.3e-08  Score=85.62  Aligned_cols=128  Identities=20%  Similarity=0.262  Sum_probs=95.0

Q ss_pred             HHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHH----HHHHHHHhhhhccchhhhHhhhhhhchhhh
Q 014682           26 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM----AVLTRFLLGSLNGLLGPIKAYACEIFREEH  101 (420)
Q Consensus        26 ~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~----l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~  101 (420)
                      .+.-.-|.++.+++.||+|||++|..+.+++++..++...+.+-..    ++.+|++.   .|.+..++.|..|.+|.+.
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi---sg~fqvaYvYtPEVyPTav  467 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI---SGAFQVAYVYTPEVYPTAV  467 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH---hchheEEEEecCcccchhh
Confidence            3455678889999999999999999999999999988877654333    34445443   3444445899999999999


Q ss_pred             hhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHHHHHHhccccc
Q 014682          102 QALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETL  174 (420)
Q Consensus       102 r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~  174 (420)
                      |+...|.-+.+.-+|.++.|.++ ...+.+                 -.++..+.+...++..+...++|-.+
T Consensus       468 RatgvGtcSsmaRIggI~~p~iA-~~~e~s-----------------~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  468 RATGVGTCSSMARIGGIFSPVIA-MRAELS-----------------TSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             hhcchhhhhhHHhhhhhhhhHHH-HHhccc-----------------eeehHHHHHHHHHHHHHHheeeeecc
Confidence            99999999999999999999998 333311                 12334455666666666667777443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.71  E-value=3.3e-07  Score=81.66  Aligned_cols=112  Identities=34%  Similarity=0.545  Sum_probs=98.8

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHhhhhccchhhh-Hhhhh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN--FWMAVLTRFLLGSLNGLLGPI-KAYAC   94 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~-~~~i~   94 (420)
                      .++..+.+.++..+++++.|.++||+|||+.+..+.....++.+...+..+  .+.+++.|+.+|++.+...+. .+++.
T Consensus        41 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  120 (338)
T COG0477          41 YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLS  120 (338)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            799999999999999999999999999998888888766666677777766  899999999999999988887 99999


Q ss_pred             hhchh-hhhhhHHHHHHH-HhHHHHHHHHHHHhHhcc
Q 014682           95 EIFRE-EHQALGLSTVST-AWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        95 ~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~l~~~l~~  129 (420)
                      |+.|+ ++|+...+.... ...+|..++|.+++.+..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T COG0477         121 EWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG  157 (338)
T ss_pred             HhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998 788999998888 688899999988888876

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.69  E-value=8.6e-07  Score=82.87  Aligned_cols=156  Identities=15%  Similarity=0.093  Sum_probs=117.6

Q ss_pred             CccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 014682          250 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  329 (420)
Q Consensus       250 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (420)
                      ++.++...+.+.+.++..++.+++.+ .+..+.||++..+.+....++-.+..++-...      .....+++.-++.|.
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~-p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~------~s~~~~ialr~llGl  146 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQF-PSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV------HSFPGLIALRFLLGL  146 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHh-hHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHH
Confidence            44678888899999999999999988 78888888884444443333332222222221      223345667777888


Q ss_pred             hhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHH
Q 014682          330 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  409 (420)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~  409 (420)
                      +..+..|....+++.-+.+++|++-+|+.++..++|+++|+.+...+.+..+ ...   ..||++.|++-+++.++..++
T Consensus       147 ~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~-~~~---~~gW~~~FiI~G~i~~~~gi~  222 (495)
T KOG2533|consen  147 FESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG-SGG---LAGWRWLFIIEGVITLVLGIV  222 (495)
T ss_pred             HhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC-CCC---cCCceeehhHHHHHHHHHHhe
Confidence            9999999999999999999999999999999999999999999888776322 111   138999999999999998887


Q ss_pred             Hhhhhhhc
Q 014682          410 TFKPFLAQ  417 (420)
Q Consensus       410 ~~~~~~~~  417 (420)
                      .++ .+|+
T Consensus       223 ~f~-~lp~  229 (495)
T KOG2533|consen  223 VFF-FLPD  229 (495)
T ss_pred             EEE-EecC
Confidence            776 5554

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.64  E-value=2.9e-06  Score=81.42  Aligned_cols=144  Identities=15%  Similarity=-0.005  Sum_probs=111.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHH
Q 014682          257 QMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIIT  336 (420)
Q Consensus       257 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (420)
                      .+.+.+.+...++..++++ ..+++.|++|||+.+..+.++..++.++.....+      ...+.+.-++.+++.+....
T Consensus        89 ~~~s~~~s~~~lga~~g~l-~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~------~~~l~~GR~l~G~g~G~~~~  161 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSL-LAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS------WYQLIVGRILTGLGVGGASV  161 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHhccchhhhhh
Confidence            3558899999999999988 7778999999999999999999999888877652      33566667777778888888


Q ss_pred             HHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhh
Q 014682          337 GLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLA  416 (420)
Q Consensus       337 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  416 (420)
                      ....+.+|..|++.||...+..+....+|..++ .+.+...+.. .       .+|+..+.+..+.+++..+. .. ..|
T Consensus       162 ~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~-~-------~~Wr~~~~~~~i~~~~~~~~-~~-~~p  230 (513)
T KOG0254|consen  162 LAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKV-Y-------AGWRIPLGLALIPAVILALG-ML-FLP  230 (513)
T ss_pred             cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccC-C-------ccHHHHHHHHHHHHHHHHHH-HH-hCC
Confidence            899999999999999999999999988888777 4444443332 0       27998888877777776666 33 455


Q ss_pred             cc
Q 014682          417 QR  418 (420)
Q Consensus       417 ~~  418 (420)
                      |.
T Consensus       231 es  232 (513)
T KOG0254|consen  231 ES  232 (513)
T ss_pred             CC
Confidence            43

>PRK11462 putative transporter; Provisional

Probab=98.62  E-value=2.2e-06  Score=80.93  Aligned_cols=174  Identities=12%  Similarity=-0.032  Sum_probs=111.4

Q ss_pred             HHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH---hhch-HHHHHHHHHHHHHHHHHHHHHHHh
Q 014682          236 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER---ILGP-IMVARIAGVLTIPLLTSYPYIAML  311 (420)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  311 (420)
                      ..++..|+.+.     .|.++..+|.++.+.-+...+..++.+...||   |+|| |+.+..+.+...+...++...+..
T Consensus        29 ~~~l~~fyt~~-----~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~  103 (460)
T PRK11462         29 MLYMMFFYTDI-----FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDL  103 (460)
T ss_pred             HHHHHHHHHHh-----hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCC
Confidence            34555565555     89999999999999999999999854444443   2455 455556666666655544333321


Q ss_pred             hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-cchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCC
Q 014682          312 SGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-QDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLP  390 (420)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~  390 (420)
                      +.........+...+...+.........++..|..+ +++|.+..+.......+|..+++.+...+.+..++.+..   .
T Consensus       104 s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~---~  180 (460)
T PRK11462        104 SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKP---L  180 (460)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh---h
Confidence            111222233334444445556666677778888765 889999999999999999999988887777665422211   1


Q ss_pred             CchHHHHHHHHHHHHHHHHHhhhhhhcc
Q 014682          391 GSQMVFFVLNVVEAIGVLMTFKPFLAQR  418 (420)
Q Consensus       391 g~~~~f~~~~~~~~~~~~~~~~~~~~~~  418 (420)
                      +|.....+.+++.+++..+.+. ..||+
T Consensus       181 g~~~~~~i~~ii~~i~~~i~~~-~~kE~  207 (460)
T PRK11462        181 GFQGGIAVLSVVAFMMLAFCFF-TTKER  207 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHh-cceec
Confidence            5666667777766666555444 33443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.61  E-value=1.5e-06  Score=75.82  Aligned_cols=322  Identities=14%  Similarity=0.021  Sum_probs=166.4

Q ss_pred             hhhhhhhhh-----hcCCchhHHH-HHHHHHHHHHHHhh-----------hhhHHHHHHHHHHhhhhccchhhh-Hhhhh
Q 014682           33 SVFWGLVAD-----RYGRKPVIIM-GTASVVIFNTLFGL-----------SVNFWMAVLTRFLLGSLNGLLGPI-KAYAC   94 (420)
Q Consensus        33 ~~~~g~l~d-----r~Grk~~l~~-~~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~   94 (420)
                      -+.|.++.|     |+||||.-++ +..+.+......+.           .++...+...-++.-+..+....+ -.+.-
T Consensus        80 KllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwAL  159 (510)
T KOG3574|consen   80 KLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWAL  159 (510)
T ss_pred             HHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence            467899999     9999886543 33333333333332           133333433445555666666665 67777


Q ss_pred             hhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchH---HHHHHHHHHHHHHHHHHhcc
Q 014682           95 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL---PCLCISLFAFGVTIAAFWLP  171 (420)
Q Consensus        95 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~  171 (420)
                      ....+++.+.+......+.+.|..++..+--.+.+..-..+....|..   ..++..   -....+...+++-....+.+
T Consensus       160 tmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~---~~g~ItL~gy~~fwg~~~~vat~Lv~~~k  236 (510)
T KOG3574|consen  160 TMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPL---DQGFITLAGYLWFWGALFIVATTLVALLK  236 (510)
T ss_pred             HhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcC---ccceEEhhHHHHHHHHHHHHHHHHHHHhc
Confidence            777888888777777766776666665432222210000000111110   000000   00122222333222223333


Q ss_pred             cccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCc
Q 014682          172 ETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG  251 (420)
Q Consensus       172 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (420)
                      ++++++..++ ++..               .++..+..+++++-|............-..+.+.....++-+.      +
T Consensus       237 ke~~~~~~~e-~~~~---------------i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLl------e  294 (510)
T KOG3574|consen  237 KENDESVDEE-LELG---------------IHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLL------E  294 (510)
T ss_pred             CCCchhhhhh-hhcC---------------HHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHH------H
Confidence            3322221100 0000               1111223566777777766655555544444444444444333      2


Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----hHHHHHHHHHHHHHHHHHHHHHHHhhh------hHHHHHH
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG-----PIMVARIAGVLTIPLLTSYPYIAMLSG------FGLAFLL  320 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  320 (420)
                      .|.+.++.+.+..+.--..++.....+++..++..     ++...++....  ...++..+.+....      .....+.
T Consensus       295 ~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~--~~t~Lv~~~~~~~~~~G~~~~~~~il~  372 (510)
T KOG3574|consen  295 HGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGL--VQTALVWWTPTLGHSDGTFPRGYYILL  372 (510)
T ss_pred             cCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHH--HHHHHHhhhcccccCCCceeechHHHH
Confidence            68888888776655444555555545555443211     11112222222  22222222221111      1223333


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhh
Q 014682          321 NCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQ  381 (420)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  381 (420)
                      +....+...+....+....+..+++.||...|+.+.+.|+..++|+---..+...+.|...
T Consensus       373 i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt  433 (510)
T KOG3574|consen  373 ITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT  433 (510)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence            3344555666677777888889999999999999999999999999988888888888753

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.57  E-value=8.8e-08  Score=87.13  Aligned_cols=129  Identities=22%  Similarity=0.300  Sum_probs=111.8

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL   82 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~   82 (420)
                      ||.+..+.-      .|........+-++.-++.+++.+|+|+-+++..++.+..+=.+..+..+|.|..+..-+++|+.
T Consensus       399 ed~~~~~~L------fGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit  472 (618)
T KOG3762|consen  399 EDLGGIKTL------FGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGIT  472 (618)
T ss_pred             hhcCCccee------eeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHH
Confidence            445544444      67777777778888888899999999999999999999999999999999999999999999999


Q ss_pred             ccchhhh-HhhhhhhchhhhhhhHHHHHH-HHhHHHHHHHHHHHhHhccccccCCccccccccc
Q 014682           83 NGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  144 (420)
Q Consensus        83 ~g~~~~~-~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~  144 (420)
                      .+..+.+ .+|+++..||+-|..+.++.. ...++|--+|+++||.+.+       .+|-|..|
T Consensus       473 ~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~-------~fg~~ttf  529 (618)
T KOG3762|consen  473 HALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE-------RFGARTTF  529 (618)
T ss_pred             HHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe-------eehhHHHH
Confidence            9998887 999999999999999999875 5678999999999999998       55555444

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.55  E-value=1.1e-06  Score=82.43  Aligned_cols=112  Identities=21%  Similarity=0.269  Sum_probs=101.4

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHhhhhccchhhh-Hhhhh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYAC   94 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~-~~~i~   94 (420)
                      .+.+..+..++..++.+++++++||+|+|+++..+..+.+++.++..+.+  |.+.+++.-++.|++.+...+. .++++
T Consensus       262 ~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~a  341 (428)
T PF13347_consen  262 ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLA  341 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccc
Confidence            68888899999999999999999999999999999999999999988886  9999999999999999988887 89999


Q ss_pred             hhchh-------hhhhhHHHHHHHHhHHHHHHHHHHHhHhcc
Q 014682           95 EIFRE-------EHQALGLSTVSTAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        95 ~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  129 (420)
                      |..+.       ++.|..++..+....+|..+++.+.+.+.+
T Consensus       342 d~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~  383 (428)
T PF13347_consen  342 DVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA  383 (428)
T ss_pred             cchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            98873       334788999999999999999999998876

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.44  E-value=0.001  Score=62.42  Aligned_cols=346  Identities=13%  Similarity=0.100  Sum_probs=165.2

Q ss_pred             hHHHHHHHHH-HHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhh---------h--------------------
Q 014682           18 AGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS---------V--------------------   67 (420)
Q Consensus        18 ~g~~~s~~~~-~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~---------~--------------------   67 (420)
                      +..+-....+ ...+......+++||++|.+++-+....+.....++++.         +                    
T Consensus        60 I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~  139 (491)
T PF03219_consen   60 IPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIA  139 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHH
Confidence            3444443333 445567778999999999999877776666666555552         1                    


Q ss_pred             --hHHHHHHHHHHhhhhccchhh-h-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhcc-ccccCC-cccccc
Q 014682           68 --NFWMAVLTRFLLGSLNGLLGP-I-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ-PAEKYP-NLFSSE  141 (420)
Q Consensus        68 --~~~~l~~~r~l~G~~~g~~~~-~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~-~~~~~~-~~~gw~  141 (420)
                        +.|.+.+.-+..-+-+..... . ..+..|.++.+|-.|..++...+.++|.++++.+...+.+ .....+ ..-.|.
T Consensus       140 ~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~  219 (491)
T PF03219_consen  140 MFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWE  219 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHh
Confidence              112222222222222222222 3 6778899999999999999999999999999888888776 111000 011111


Q ss_pred             ccccCccchHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHH
Q 014682          142 SLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSS  221 (420)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (420)
                      .     ..........+.+++......++.+...+++...++.++         +++++++....+..+.++|+|.+...
T Consensus       220 ~-----~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~~~~~---------~kk~k~k~s~~es~k~l~kS~yL~~I  285 (491)
T PF03219_consen  220 L-----SLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFYPSAKK---------KKKKKPKMSLKESFKLLLKSKYLLCI  285 (491)
T ss_pred             H-----HHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchhhhc---------ccccCCCccHHHHHHHHHhCHHHHHH
Confidence            1     111111122222222222333333221111110000000         00000011122456677888888776


Q ss_pred             HHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 014682          222 IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPL  301 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (420)
                      .+...++.......+...-....+... +...++ ...|......++..++..+ +++.+-||.|-+....+.-+...+.
T Consensus       286 a~lvi~Ygi~inLvE~~wK~~lk~~~~-~~~~ys-afmG~~~~~tGivtii~~~-l~~~iir~~GW~~~AlitPiv~lit  362 (491)
T PF03219_consen  286 ALLVIAYGISINLVEVVWKSQLKQLYP-DPNDYS-AFMGKFSSWTGIVTIIMMF-LSSNIIRRFGWRTAALITPIVILIT  362 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCC-CchHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHhHHHHHHH
Confidence            666655554433333222222221110 001222 2235556666777777764 6778888888776666554443333


Q ss_pred             HHHHH-HHHHhhhhHHHHH------HHHHHHHHHhhhHHH--------HHHHHHHhhhcCCcchhhHHhhHHHHHH-HHH
Q 014682          302 LTSYP-YIAMLSGFGLAFL------LNCASVVKNLLSVSI--------ITGLFILQNRAVDQDQRGAANGIAMTGM-SLF  365 (420)
Q Consensus       302 ~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g  365 (420)
                      .+.+. .............      ........|......        +...--++---.+++.|.++=+....+. .+|
T Consensus       363 ~~~FF~~~~f~~~~~~~~~~~~~~~pl~lav~~G~i~~v~~K~~kYs~fd~~kEm~yipld~e~k~k~Ka~iD~~~~r~G  442 (491)
T PF03219_consen  363 GLLFFGFILFNNSLGPIVASLFGTSPLMLAVFFGAIQNVLSKSAKYSLFDPTKEMAYIPLDPESKYKGKAAIDVVGSRLG  442 (491)
T ss_pred             HHHHHHHHHHhhhhhHHHHHhhccchHHHHHHHHHHHHHHHhhcceeecchhhhhhcccCCHHHHhhcceeeeeeccchh
Confidence            22221 1111100000000      000111111111000        0011111111146788888888776654 788


Q ss_pred             HHHhhhhhhHHHHhh
Q 014682          366 KAAGPAGGGALFSWA  380 (420)
Q Consensus       366 ~~~g~~~~g~l~~~~  380 (420)
                      -..|..+...+....
T Consensus       443 Ks~gs~~~~~l~~~~  457 (491)
T PF03219_consen  443 KSGGSLIQQGLLSLF  457 (491)
T ss_pred             hHHHHHHHHHHHHHh
Confidence            888887766665554

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.42  E-value=5.1e-06  Score=64.73  Aligned_cols=108  Identities=20%  Similarity=0.186  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhh-Hhhhhhhchh
Q 014682           21 VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE   99 (420)
Q Consensus        21 ~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~   99 (420)
                      -.++......+++++.+.+.+++|.|+.++++.+...+-.... +-++.+.++.+-.+.|++.+..+++ ..++.+..++
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~  120 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE  120 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence            4566677778888999999999999999999999888555443 5677889999999999999999998 8899999999


Q ss_pred             hhhhhHHHHHHHHhHHHHHHHHHHHhHhcc
Q 014682          100 EHQALGLSTVSTAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus       100 ~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  129 (420)
                      ++|+|..++.-.....+.++|.++.-.+.+
T Consensus       121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen  121 ETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999988887766543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.40  E-value=2.8e-05  Score=67.94  Aligned_cols=146  Identities=16%  Similarity=0.061  Sum_probs=119.7

Q ss_pred             CCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 014682          249 LGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKN  328 (420)
Q Consensus       249 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (420)
                      .+++|.+...+|++.+...+..-..++ ..+++.||++.++.+..+.++..++.++=...       ....++....+.+
T Consensus        39 r~~~gls~s~aGlLTtLPll~fg~~ap-~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-------~~~~L~~gt~l~G  110 (395)
T COG2807          39 RQDLGLSFSVAGLLTTLPLLAFGLFAP-AAPRLARRFGEERSLFLALLLIAAGILIRSLG-------GLPLLFLGTLLAG  110 (395)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHH
Confidence            455899999999999998888888777 88999999999999999998888877765432       1223455556666


Q ss_pred             hhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHH
Q 014682          329 LLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVL  408 (420)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~  408 (420)
                      ......+.....++.+.+| ++.+..+|++.+...+++++++.+.-.+.++..         +|+....+-+..++++.+
T Consensus       111 ~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~---------gW~~aL~~WAl~allAl~  180 (395)
T COG2807         111 AGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSG---------GWRGALGFWALLALLALL  180 (395)
T ss_pred             hhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhc---------cHHHHHHHHHHHHHHHHH
Confidence            6667777888888888887 889999999999999999999999999998872         799999999999888877


Q ss_pred             HHhh
Q 014682          409 MTFK  412 (420)
Q Consensus       409 ~~~~  412 (420)
                      ..+-
T Consensus       181 ~WlP  184 (395)
T COG2807         181 IWLP  184 (395)
T ss_pred             HHhh
Confidence            6554

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.39  E-value=8.3e-06  Score=78.58  Aligned_cols=138  Identities=17%  Similarity=0.139  Sum_probs=113.0

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  331 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (420)
                      ...+........++..++..++++ +.+.++|++|||+++..+.++..++.+...+..+      .....+.-++.+++.
T Consensus       113 ~c~~~~~~~~~~s~~~~G~~vG~~-i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~------~~~~~~~Rfl~G~~~  185 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLGVLVGSL-IFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN------YWMFLIFRFLSGFFG  185 (521)
T ss_pred             eeCcHhHHHHHHHHHHHHHHHHHh-hheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc------HHHHHHHHHHHHhhc
Confidence            456667777788888888888877 7788888899999999999998888766666543      334556667777888


Q ss_pred             HHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHH
Q 014682          332 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  409 (420)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~  409 (420)
                      .+.......+..|.+++++|+.+..+ ......++..+|...+++..            +|+..+++.....++..++
T Consensus       186 ~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~------------~Wr~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  186 SGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR------------DWRWLFWIISIPSGLFLLL  250 (521)
T ss_pred             cchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999 88889999999999888876            4888888888887777665

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.38  E-value=0.00018  Score=65.73  Aligned_cols=167  Identities=11%  Similarity=-0.071  Sum_probs=100.4

Q ss_pred             hhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhch-
Q 014682          209 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP-  287 (420)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-  287 (420)
                      ..+++|-|++....+.....-..+........+=+.      +.|++.+..+.+..+..=..++.....++|...+-.. 
T Consensus       271 l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLl------EkG~~KE~LAl~~li~~P~qii~~~~~~Kws~g~~P~~  344 (544)
T PF13000_consen  271 LWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLL------EKGLSKEDLALLVLIDFPFQIILPYYIGKWSAGSPPLD  344 (544)
T ss_pred             HHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHH------HcCCCHHHhHHHHHHhhhHHHHHHHHhhhhhcCCCccc
Confidence            445677788877777666655554444444333332      2688888887777665555556555555554443110 


Q ss_pred             -------------------------HHHHHHHHHHHHHH----HHHHHHHHHh--hhhHHHHHHHHHHHHHHhhhHHHHH
Q 014682          288 -------------------------IMVARIAGVLTIPL----LTSYPYIAML--SGFGLAFLLNCASVVKNLLSVSIIT  336 (420)
Q Consensus       288 -------------------------~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  336 (420)
                                               .+....+...-.+.    .......+..  .+...+..+++...+..+.....+.
T Consensus       345 ~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFV  424 (544)
T PF13000_consen  345 VDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFV  424 (544)
T ss_pred             cccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence                                     01111111111111    1111111100  1123444455556666677778888


Q ss_pred             HHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhh
Q 014682          337 GLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQ  381 (420)
Q Consensus       337 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  381 (420)
                      ...+.-+++.+|..-|+.+.+.|++.++|+---..+.=++.|...
T Consensus       425 ai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT  469 (544)
T PF13000_consen  425 AIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFT  469 (544)
T ss_pred             HHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcc
Confidence            888999999999999999999999999999888888878888753

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.36  E-value=0.00035  Score=61.53  Aligned_cols=150  Identities=12%  Similarity=0.070  Sum_probs=96.6

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  331 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (420)
                      +|++..+++.++......+.+.+. +.+.+.||+|||+......++..++++.-..       .....+++.-++.+...
T Consensus        64 yg~~~~qIa~Lf~~Gf~Ss~i~g~-~~G~laD~~Grk~~cl~~cily~~scl~k~~-------~~~~~L~~GRvlgGiaT  135 (354)
T PF05631_consen   64 YGFSEHQIAILFVAGFASSAIFGT-FVGSLADRYGRKKACLLFCILYSLSCLTKHS-------SNYPVLLLGRVLGGIAT  135 (354)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHH
Confidence            799999999999987788888777 6677888889999988888888777764322       22334455555555555


Q ss_pred             HHHHHHHHHHh-hh----cCCcchhhHHhhHHHH-HHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHH
Q 014682          332 VSIITGLFILQ-NR----AVDQDQRGAANGIAMT-GMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAI  405 (420)
Q Consensus       332 ~~~~~~~~~~~-~~----~~~~~~~g~~~g~~~~-~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~  405 (420)
                      .......-+.. .|    -+|++..+...+.... .+.+-++.+..++-.+.+..+        .|...+|.....+.++
T Consensus       136 SLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~--------~g~vaPF~~a~~~l~~  207 (354)
T PF05631_consen  136 SLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG--------FGPVAPFDAAIVLLAV  207 (354)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC--------CCCcchHHHHHHHHHH
Confidence            55555544432 22    3566666666665552 234444445555555555442        1457788888888888


Q ss_pred             HHHHHhhhhhhcc
Q 014682          406 GVLMTFKPFLAQR  418 (420)
Q Consensus       406 ~~~~~~~~~~~~~  418 (420)
                      +.+++.. ..+|+
T Consensus       208 ~~~~I~~-~W~EN  219 (354)
T PF05631_consen  208 AAVLILK-TWPEN  219 (354)
T ss_pred             HHHHHHh-ccccc
Confidence            8777665 44443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.32  E-value=5.5e-06  Score=74.36  Aligned_cols=129  Identities=12%  Similarity=-0.003  Sum_probs=99.8

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHhh
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF-GLAFLLNCASVVKNLL  330 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  330 (420)
                      -++++...+.+..+..++.+.+++ ..+++.|++|||+++...+++++++.++.......+.. .....+...=.+.+++
T Consensus        79 g~~ps~i~~~Vn~~A~vGti~GQl-~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiG  157 (538)
T KOG0252|consen   79 GHYPSGVLALVNAAALVGTIFGQL-FFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIG  157 (538)
T ss_pred             CcCCchHHHHHHHHHHHHHHHHHH-HHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhcc
Confidence            347777888888888999999998 88999999999999999988888877654443332222 3344455556667778


Q ss_pred             hHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhh
Q 014682          331 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQ  381 (420)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  381 (420)
                      .++-+|...++++|....+.||+-.+....++.+|...|..+.-.+...+.
T Consensus       158 IGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe  208 (538)
T KOG0252|consen  158 IGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFE  208 (538)
T ss_pred             ccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHh
Confidence            888999999999999999999999999888888887777666655554443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.31  E-value=2.1e-05  Score=72.17  Aligned_cols=176  Identities=14%  Similarity=0.002  Sum_probs=121.1

Q ss_pred             HHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh---hch-HHHHHHHHHHHHHHHHHHHHHHH
Q 014682          235 YSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI---LGP-IMVARIAGVLTIPLLTSYPYIAM  310 (420)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~  310 (420)
                      ...++..|+.+.     .|.++..+|.++.+.=+...+..++.+...||+   +|| |+.+..+.+...+...+....+.
T Consensus        31 ~~~yLl~fYTdv-----~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~  105 (467)
T COG2211          31 VVLYLLFFYTDV-----FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPD  105 (467)
T ss_pred             HHHHHHHHHhcc-----cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCC
Confidence            334555666666     899999999999999999999988544444432   333 55666665655555555444432


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC-CcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCC
Q 014682          311 LSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV-DQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFL  389 (420)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~  389 (420)
                      ......+....+...+.+.+....+....++.+++. ++++|.+..+.-.....+|..+...+.+++.+..++.+...  
T Consensus       106 ~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~--  183 (467)
T COG2211         106 FSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKAL--  183 (467)
T ss_pred             cccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh--
Confidence            221223333334444444555566666667777765 47899999999999999999999999999999887765433  


Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhhhhhccC
Q 014682          390 PGSQMVFFVLNVVEAIGVLMTFKPFLAQRH  419 (420)
Q Consensus       390 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  419 (420)
                       ||+....+.+++.++..++.++ ..+||.
T Consensus       184 -g~~~~~~~~~vi~~i~~l~~~~-~v~ER~  211 (467)
T COG2211         184 -GYQGTALVLGVIGVILLLFCFF-NVKERV  211 (467)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHH-Hhhccc
Confidence             7888888888888888777776 566653

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.21  E-value=5.4e-05  Score=64.10  Aligned_cols=137  Identities=18%  Similarity=0.051  Sum_probs=92.2

Q ss_pred             HHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhh-HH
Q 014682          238 IFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF-GL  316 (420)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  316 (420)
                      .++.|..+  ..+.+|+|+.+...+.....++..++ + ..+.+.|+.+++.++.++.....++............. ..
T Consensus        20 ~Fs~yS~~--Lk~~l~~sq~~l~~l~~~~~~G~~~G-~-~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~   95 (250)
T PF06813_consen   20 TFSAYSPQ--LKSRLGYSQSQLNTLSTAGDIGSYFG-I-LAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLP   95 (250)
T ss_pred             chhhhhHH--HHHHhCCCHHHHHHHHHHHHHHhhcc-H-HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccc
Confidence            44444433  33448999999999998888888765 5 67888899999999999999999998777655433221 12


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHh
Q 014682          317 AFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW  379 (420)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  379 (420)
                      .+.+.....+.+......+........+.+| ++||++.|+.-....+++++-..+...+.+.
T Consensus        96 ~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   96 VWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             hHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            2222333333333333334444444556687 6899999999999999888777665555443

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.17  E-value=0.001  Score=63.87  Aligned_cols=128  Identities=14%  Similarity=0.104  Sum_probs=92.5

Q ss_pred             cccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhc-CCchhHHHHHHHHHHHHHHHhhhhh--------------
Q 014682            4 DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTASVVIFNTLFGLSVN--------------   68 (420)
Q Consensus         4 ~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~~~~--------------   68 (420)
                      ++|.+..+      +.-..+.+.-......+..+.++|-| ||-+++.++.++..++..+..++..              
T Consensus        67 ~~~~~~~~------aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~  140 (571)
T KOG1237|consen   67 ELHASGGG------AANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPG  140 (571)
T ss_pred             HhccchHH------HHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCC
Confidence            44555444      55566677777777888999999975 8999999998888888655544311              


Q ss_pred             -----------HHHHHHHHHHhhhhccchhhh-Hhhhhhhch---hhh-h--hhHHHHHHHHhHHHHHHHHHHHhHhccc
Q 014682           69 -----------FWMAVLTRFLLGSLNGLLGPI-KAYACEIFR---EEH-Q--ALGLSTVSTAWGIGLIIGPALGGFLAQP  130 (420)
Q Consensus        69 -----------~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~---~~~-r--~~~~~~~~~~~~~g~~~g~~l~~~l~~~  130 (420)
                                 ...+..+.-+..+|.|..-|+ .+.-+|.++   +++ +  ..-+.++....++|..++-.+-.+.-+ 
T Consensus       141 ~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~-  219 (571)
T KOG1237|consen  141 GNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQD-  219 (571)
T ss_pred             CCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhh-
Confidence                       124555666777788998898 888899988   322 2  366788888999999998888777766 


Q ss_pred             cccCCccccccccc
Q 014682          131 AEKYPNLFSSESLF  144 (420)
Q Consensus       131 ~~~~~~~~gw~~~~  144 (420)
                            ..||..-|
T Consensus       220 ------~~~w~lgf  227 (571)
T KOG1237|consen  220 ------NVGWKLGF  227 (571)
T ss_pred             ------cccceeec
Confidence                  66775544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.17  E-value=4.8e-05  Score=68.00  Aligned_cols=152  Identities=18%  Similarity=0.174  Sum_probs=118.9

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhh-hcCCchhHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-RYGRKPVIIMGTASVVIFNTLFGL---SVNFWMAVLTRFL   78 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d-r~Grk~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l   78 (420)
                      |-||+|..|      ..-++.....|..++-...|++.. |.++|+.-.+++....++..+..+   ..+.+.+...-++
T Consensus       237 ~Vfgmsv~e------TT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l  310 (403)
T PF03209_consen  237 EVFGMSVGE------TTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFL  310 (403)
T ss_pred             HHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            457889999      899999999999999999998888 677888888888888777666544   4678899999999


Q ss_pred             hhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHH
Q 014682           79 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS  157 (420)
Q Consensus        79 ~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  157 (420)
                      .|++.|.+... .+.+.|..++++-|..+|.+.....++..+|..+++.+.|....+...   +  - ..+|-.+|.+.+
T Consensus       311 ~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~---~--~-~~aY~~VF~lEa  384 (403)
T PF03209_consen  311 LGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN---S--P-ALAYGVVFALEA  384 (403)
T ss_pred             HHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---C--c-chHHHHHHHHHH
Confidence            99999999887 889999999999999999999999999999999999998732211100   0  0 234555556665


Q ss_pred             HHHHHHHHH
Q 014682          158 LFAFGVTIA  166 (420)
Q Consensus       158 ~~~~~~~~~  166 (420)
                      +..+..+..
T Consensus       385 ~ll~~a~~l  393 (403)
T PF03209_consen  385 VLLLAALVL  393 (403)
T ss_pred             HHHHHHHHH
Confidence            555554443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=98.15  E-value=0.00082  Score=62.51  Aligned_cols=52  Identities=15%  Similarity=0.036  Sum_probs=39.0

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhh
Q 014682          321 NCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG  372 (420)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~  372 (420)
                      ++..++.++..+-..........+..++++|..+..+.+.+-.+|-.+|..+
T Consensus       376 ~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       376 IILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555566666677777788888999999888888888888888777765

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=98.11  E-value=9.1e-05  Score=61.84  Aligned_cols=243  Identities=11%  Similarity=0.010  Sum_probs=109.5

Q ss_pred             hhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHHHHHHhcccccCCCCC
Q 014682          100 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND  179 (420)
Q Consensus       100 ~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~  179 (420)
                      |+|+....+...+.++|.++.-..  ++.+...        +. ..+..|+....+.+++.++.++....+- ++-+...
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ip--F~~~~~~--------~~-~~~~~W~~I~si~~lL~~IpLIly~ifG-k~fd~~~   69 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIP--FLISSSV--------VI-ALTNNWQWILSIFILLIFIPLILYIIFG-KNFDIYS   69 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhh--HHhcchH--------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccC
Confidence            567777777778888888776443  2222000        01 1145577666666666655444444432 2211111


Q ss_pred             CCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCC----c
Q 014682          180 DDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY----S  255 (420)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  255 (420)
                      +++++++.            +.+.+++....+.+|+|.-|...+.+.........-  ..+.+..........+.    +
T Consensus        70 ~~~k~~k~------------~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~V~p--~t~~~~~~~~~~s~~ni~~~~~  135 (267)
T PF07672_consen   70 PKEKQEKE------------NSTLSKKPSYKSILKEKETWKWILIYGIWLVVVVFP--FTPSWFNILIWISPANIKSVVS  135 (267)
T ss_pred             cccccccc------------cccccccchHHHHHccchHHHHHHHHHHHheeEEEe--ccchhHhHhhhcCccccccccc
Confidence            11010000            002223466788999999988877776654322111  01111110100000111    0


Q ss_pred             hh---hHHHHHHHHHHHHHHHH-HHHHHHHHHhhchHHHHHHH----HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 014682          256 TQ---MVGEVLAITGFSLLVFQ-LSLYPFLERILGPIMVARIA----GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVK  327 (420)
Q Consensus       256 ~~---~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (420)
                      ..   ...-...+..+.+.+.+ ..++++-....+||+.+...    .++..+..+. ..............+.+..++.
T Consensus       136 ~~~~~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~-~~~~g~~~~~~~~~f~I~~Fl~  214 (267)
T PF07672_consen  136 GGGFNWIIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVV-VYFVGPGNAAGFAFFYIFGFLA  214 (267)
T ss_pred             ccccchhhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHhCcchHHHHHHHHHHHHHH
Confidence            11   11122333333343333 33333433345566655432    2222222222 1111112222334456666677


Q ss_pred             HhhhHHHHHHHHHHhhhc--CCcchhhHHhhHHHHHHHHHHHHh
Q 014682          328 NLLSVSIITGLFILQNRA--VDQDQRGAANGIAMTGMSLFKAAG  369 (420)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~~~~g~~~g  369 (420)
                      +.+.-++.+....+..|.  .+|++.|...|+.=.++.+.-.+.
T Consensus       215 G~f~WgiQ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~  258 (267)
T PF07672_consen  215 GFFLWGIQGVILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIY  258 (267)
T ss_pred             HHHHHhhhHHHhcChhhhcCCCcceehhHHHHHHHHHHHHHHHH
Confidence            777777777776666653  345666666665544444443333

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.11  E-value=6e-06  Score=56.28  Aligned_cols=66  Identities=17%  Similarity=0.300  Sum_probs=61.3

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHH
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMA   72 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l   72 (420)
                      |++|.++|.++      .|++.+.+++||.+|.+...++.++..+++.+..+++...+..+.+++.++++..
T Consensus        18 M~~~~~ls~~~------ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen   18 MQADGGLSLSQ------AGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             HHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            46888999999      9999999999999999999999999888999999999999999999999887764

Note that many members are hypothetical proteins.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.08  E-value=5.7e-05  Score=67.94  Aligned_cols=128  Identities=13%  Similarity=-0.051  Sum_probs=85.6

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHh
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAML--SGFGLAFLLNCASVVKNL  329 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  329 (420)
                      +| +...+-+...++.+..++..+ .+-|+.||+|-|....++..+..++..+=.....+  +......+......+.+.
T Consensus        75 Yg-s~~~~~wlsmIym~v~vp~gf-~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~  152 (480)
T KOG2563|consen   75 YG-SSSAADWLSMIYMVVSVPFGF-AAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAA  152 (480)
T ss_pred             hc-chHHHHHHHHHHHHHHHHHhh-HHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHH
Confidence            45 555566677777788888876 67778888899999999999988887764443322  111111233333333322


Q ss_pred             hhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhh
Q 014682          330 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQ  381 (420)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  381 (420)
                      ....+.....-+..--+|+++|+++..+....+.+|.+++..+...+..+..
T Consensus       153 Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~  204 (480)
T KOG2563|consen  153 AQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSK  204 (480)
T ss_pred             hhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCC
Confidence            2222222223344455899999999999999999999999998888887763

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.05  E-value=0.00025  Score=69.16  Aligned_cols=168  Identities=10%  Similarity=-0.051  Sum_probs=111.4

Q ss_pred             HHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhh--h
Q 014682          237 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG--F  314 (420)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  314 (420)
                      ..+..|+...     +|++...+..+........-+..++.+...++++|+++.+..+.++..++..+.........  .
T Consensus         8 aiLvlYl~~~-----lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~   82 (654)
T TIGR00926         8 TILVLYFLNF-----LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHP   82 (654)
T ss_pred             HHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence            3444555444     68888877777766666666665645555566789999999998888888776655322111  1


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcc---hhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCC
Q 014682          315 GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD---QRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPG  391 (420)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g  391 (420)
                      ......+....+...+..++-|...+...+.++++   .+-+.+.+.....++|+.+++.+.+++.+..+.....   .+
T Consensus        83 ~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~---~~  159 (654)
T TIGR00926        83 LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQ---DC  159 (654)
T ss_pred             hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC---cc
Confidence            11122333444455566677788888888888754   4677888888888999999999999887553211000   16


Q ss_pred             chHHHHHHHHHHHHHHHHHhh
Q 014682          392 SQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       392 ~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      |...|.+.+++++++.++...
T Consensus       160 ~~~aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       160 YPLAFGVPAILMILALIVFMA  180 (654)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            888999988888888766543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.05  E-value=0.00017  Score=66.14  Aligned_cols=104  Identities=16%  Similarity=0.246  Sum_probs=78.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhh---------hHHHHHHHHHHhhhhccchhhh-Hhhhhhhchhh---hhhhHHHHHHHHh
Q 014682           47 PVIIMGTASVVIFNTLFGLSV---------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE---HQALGLSTVSTAW  113 (420)
Q Consensus        47 ~~l~~~~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~---~r~~~~~~~~~~~  113 (420)
                      |+++++.++..+|.++..++.         +.+.++++-.+.++|.|..-|+ ..+.+|.++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567888888888888855432         2367888899999999999998 99999999865   5678888999999


Q ss_pred             HHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHHHH
Q 014682          114 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA  166 (420)
Q Consensus       114 ~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (420)
                      ++|..+++.+.+++-+                +++|...+.+.++..++.++.
T Consensus        82 n~G~~~~~~~~~~i~~----------------~~~~~~~f~i~~~~~~~~~~~  118 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQ----------------NYGWFLGFGIPAIGMLLALIV  118 (372)
T ss_dssp             HHHHHHHHHCCCHHHH----------------CS-HHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhcccchhhcc----------------ccchhhhhhHHHHHHHHHHHH
Confidence            9999999999999987                444555556665555554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.04  E-value=0.00039  Score=64.87  Aligned_cols=131  Identities=18%  Similarity=0.192  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Q 014682          267 GFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV  346 (420)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (420)
                      ++..++.+. ..+.++|++|||..+........+......+..       ++.+..  .-.............+++++..
T Consensus        72 ~~~~~i~s~-~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-------~~~~~~--~~l~g~~~~~~s~~~a~vadis  141 (463)
T KOG2816|consen   72 GLLTLISSP-LIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-------YWFFLL--LGLSGGFSAIFSVGFAYVADIS  141 (463)
T ss_pred             HHHHHHHHh-hhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-------HHHhhh--cccccchhhhhhhhhhheeecc
Confidence            556666666 567778888999999888877777666654432       222221  1122344566778888999999


Q ss_pred             CcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhcc
Q 014682          347 DQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQR  418 (420)
Q Consensus       347 ~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  418 (420)
                      ..++|....|+.+.....+..++|...+.+.+..          |+..+|.+..+..++..+.... ..||+
T Consensus       142 ~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~----------~~a~~f~ia~~~~~~~~~y~~~-~l~Es  202 (463)
T KOG2816|consen  142 SEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL----------GIALVFLIAAASGILSLLYMLL-FLPES  202 (463)
T ss_pred             chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc----------CchHHHHHHHHHHHHHHHHHhh-ccccc
Confidence            9999999999999999999999999999999986          8889999999999988888777 66664

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.94  E-value=0.016  Score=53.31  Aligned_cols=341  Identities=13%  Similarity=0.054  Sum_probs=174.4

Q ss_pred             hHHHHHHHHH-HHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhh---------hhH------------------
Q 014682           18 AGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS---------VNF------------------   69 (420)
Q Consensus        18 ~g~~~s~~~~-~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~---------~~~------------------   69 (420)
                      +.++-+..-+ +..+..++..++.++..|.+++-.-+..+....+++++.         +++                  
T Consensus        63 I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~i  142 (509)
T COG3202          63 ISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFI  142 (509)
T ss_pred             hHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeee
Confidence            6666676766 677888999999999999999988777777777777663         110                  


Q ss_pred             -----HHHHHHHHHhhhhccchhh-h-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccc
Q 014682           70 -----WMAVLTRFLLGSLNGLLGP-I-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES  142 (420)
Q Consensus        70 -----~~l~~~r~l~G~~~g~~~~-~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~  142 (420)
                           |...+.-...=+-...... . .....|.++.+|-.|..++++.+.+++..++..+..++....+.+.      .
T Consensus       143 li~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~------~  216 (509)
T COG3202         143 LIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALA------S  216 (509)
T ss_pred             EeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHh------H
Confidence                 2222222222222222222 3 5567888899999999999999999999999888888876221100      0


Q ss_pred             cccCccchHHHHHHHHHHHHHHHHHHhccc----ccCCC-C-CCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccch
Q 014682          143 LFGKFPYFLPCLCISLFAFGVTIAAFWLPE----TLHRH-N-DDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  216 (420)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (420)
                      -+.....+..+.+.+...++.+...+++.+    +|... + .+++++++.              +-.-.+..+.+.|+|
T Consensus       217 ~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~kk~~~k~--------------k~~~~~s~k~i~~Sk  282 (509)
T COG3202         217 EFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKKKKKKKL--------------KLGLIESFKMILRSK  282 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhcccccccc--------------cCcHHHHHHHHHhhh
Confidence            000011333334444444444444444322    22210 0 000000000              111223456677888


Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 014682          217 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  296 (420)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (420)
                      .++...+...+++.+........-.-.......  ..--....|.+....++...+.....+.-+.||.|-.....+.-+
T Consensus       283 yL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~--~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPi  360 (509)
T COG3202         283 YLGAIALLVLAYGVSINLVEGVWKSGIKELYPT--TNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPL  360 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCC--hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHH
Confidence            877666665555544333222111111100000  111233445666677777666666677777777776665555555


Q ss_pred             HHHHHHHHHHHHH---HhhhhH-----HHHHHHHHHHHHHhhhHH-------HHHHHHHHhhhcCCcchhhHHhhHHHHH
Q 014682          297 LTIPLLTSYPYIA---MLSGFG-----LAFLLNCASVVKNLLSVS-------IITGLFILQNRAVDQDQRGAANGIAMTG  361 (420)
Q Consensus       297 ~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~g~~~~~  361 (420)
                      ...++.+++....   ......     ....+.+....++.....       ..-..--...--.+|++|.++-+....+
T Consensus       361 v~litg~lFF~~~~f~~~~~~~~~~~~~~~pl~L~v~iG~iqnvlsK~~KYslfD~tKEma~ipldpe~r~kgKAa~D~i  440 (509)
T COG3202         361 VMLITGVLFFGFAFFNNSIGSIFGGILGSPPLVLAVYIGGIQNVLSKITKYSLFDATKEMAYIPLDPEYRTKGKAAVDVI  440 (509)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccccCCchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHcCcCCHhHHhhccchhhhh
Confidence            5444433332111   110000     000011111111111110       1111111111124688898888888766


Q ss_pred             H-HHHHHHhhhhhhHHHHhh
Q 014682          362 M-SLFKAAGPAGGGALFSWA  380 (420)
Q Consensus       362 ~-~~g~~~g~~~~g~l~~~~  380 (420)
                      . .+|-.+|..+...+....
T Consensus       441 ~~k~GKSiGSli~~~~~~i~  460 (509)
T COG3202         441 GGKLGKSIGSLIQSLLFIIF  460 (509)
T ss_pred             hhcccccHHHHHHHHHHhee
Confidence            5 788777777766555554

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.91  E-value=1.7e-07  Score=88.53  Aligned_cols=136  Identities=20%  Similarity=0.333  Sum_probs=88.0

Q ss_pred             HHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHh--h---hhh-----HHHHHHHHHHhhhhccchhhh-Hhhhhh
Q 014682           27 FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG--L---SVN-----FWMAVLTRFLLGSLNGLLGPI-KAYACE   95 (420)
Q Consensus        27 ~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~--~---~~~-----~~~l~~~r~l~G~~~g~~~~~-~~~i~~   95 (420)
                      +...++.+....+.||+|||++++.+..+.+++.+..+  .   .++     ...+.......-.......+. ..+..|
T Consensus       297 ~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~E  376 (451)
T PF00083_consen  297 LVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAE  376 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccc
Confidence            44456666777999999999999999998888877764  1   111     112221121111122233455 688899


Q ss_pred             hchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHHHHHHhcccccC
Q 014682           96 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  175 (420)
Q Consensus        96 ~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~  175 (420)
                      .+|.+.|++..++......++..++|.+...+.+       ..+-        +....+..++..+..++..+++||++.
T Consensus       377 lfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~-------~~~~--------~~~~~i~~~~~~i~~i~~~~~lpET~g  441 (451)
T PF00083_consen  377 LFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFN-------NLGG--------WGVFLIFAGVCLIAIIFVYFFLPETKG  441 (451)
T ss_pred             cccccccccccccccccccccccccccccccccc-------cccc--------cccchhhHHHHHHHHhheeEEEeeCCC
Confidence            9999999999999999989999888888777765       2220        111112333333444566788999875


Q ss_pred             CC
Q 014682          176 RH  177 (420)
Q Consensus       176 ~~  177 (420)
                      ..
T Consensus       442 ~~  443 (451)
T PF00083_consen  442 KT  443 (451)
T ss_pred             CC
Confidence            43

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.85  E-value=0.0005  Score=63.59  Aligned_cols=163  Identities=14%  Similarity=0.105  Sum_probs=111.3

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  331 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (420)
                      .+-+.+..|+..+...++..+.++..+.|-.|+..-|+-+..+.++++++.+++......+... ..++++.-++.| .+
T Consensus        66 ~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~-~y~mL~~R~l~G-vg  143 (488)
T KOG2325|consen   66 PTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGV-KYLMLVARILTG-VG  143 (488)
T ss_pred             CCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHcC-cC
Confidence            5677788899999999999999996666655554447888888999999988886555544332 223333334333 34


Q ss_pred             HHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhcc--CC-CCCCCchHHHHHHHHHHHHHHH
Q 014682          332 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRL--DA-SFLPGSQMVFFVLNVVEAIGVL  408 (420)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~--~~-~~~~g~~~~f~~~~~~~~~~~~  408 (420)
                      .+.......++++..-+++|.++++..+...-+|.++||.+...+........  .+ ....-|..+-++.+.+.++..+
T Consensus       144 ~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v  223 (488)
T KOG2325|consen  144 VGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIV  223 (488)
T ss_pred             cccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHH
Confidence            45566777888887788999999999888888888888887665554432211  11 1112466777888888888877


Q ss_pred             HHhhhhhhc
Q 014682          409 MTFKPFLAQ  417 (420)
Q Consensus       409 ~~~~~~~~~  417 (420)
                      +... ..+|
T Consensus       224 ~i~~-~f~E  231 (488)
T KOG2325|consen  224 IILF-FFKE  231 (488)
T ss_pred             HHHh-heee
Confidence            7665 4443

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.84  E-value=0.00039  Score=59.31  Aligned_cols=108  Identities=15%  Similarity=0.036  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhhHhhhhhhc
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIF   97 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~   97 (420)
                      .|.+.-+-.+...+..+.+....||+.--.=..+..++.+.+.++.+++++.++=+.+-.+..++.|.-....--.+..+
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y  143 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY  143 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC
Confidence            35555566677777888888899987643334556677888889999999999988888888888877665533333333


Q ss_pred             hhhhhhhHHHHHHHHhHHHHHHHHHHHhHhcc
Q 014682           98 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        98 ~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  129 (420)
                      ++    ...+.++.+.+.++.+|..--..+.+
T Consensus       144 ~~----~~i~~WSSGTGgAGliGa~SYa~lT~  171 (409)
T KOG3880|consen  144 PS----IVIAGWSSGTGGAGLIGASSYAFLTS  171 (409)
T ss_pred             CC----ceeccccCCCCcchhhhhhHHHHHhh
Confidence            33    23556666777777777765555554

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.78  E-value=4.1e-05  Score=51.84  Aligned_cols=47  Identities=26%  Similarity=0.596  Sum_probs=42.0

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS   55 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~   55 (420)
                      ++.|+|+.|      +|.+.++..+...++++++|.++||++|++..+.....
T Consensus        28 ~~~Gl~~~~------iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   28 KQLGLSPSQ------IGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             hhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            568999999      99999999999999999999999999998887765544

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.72  E-value=0.0074  Score=47.18  Aligned_cols=105  Identities=17%  Similarity=0.058  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Q 014682          265 ITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNR  344 (420)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (420)
                      +......+.++ +.+.+.+++|.|+.+.++.+...+-.+....       ..+..++....+.++.....+.....++.+
T Consensus        45 i~Y~~~~~s~l-~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~  116 (156)
T PF05978_consen   45 ILYGSFAISCL-FAPSIVNKLGPKWSMILGSLGYAIYIASFFY-------PNSYTLYPASALLGFGAALLWTAQGTYLTS  116 (156)
T ss_pred             HHHHHHHHHHH-hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHhhhhHHhhHhhhHHHHH
Confidence            33444455555 5677888899999999998887766555432       123456667777778888888888889999


Q ss_pred             cCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHH
Q 014682          345 AVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF  377 (420)
Q Consensus       345 ~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  377 (420)
                      ..+++.+++-.|+.-.+.+.+..+|..+.-.+.
T Consensus       117 ~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  117 YSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             cCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999988888888888877655443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.44  E-value=0.0053  Score=57.44  Aligned_cols=147  Identities=12%  Similarity=0.073  Sum_probs=93.9

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-----GPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVV  326 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (420)
                      +|.++.+...+.....+...+- . +.+.++|.+     +||+.+.++.++..++...+...+.......  ...+..++
T Consensus        20 l~ls~~~~~~~~~~~~lPw~~K-p-~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~--~~~~~l~l   95 (433)
T PF03092_consen   20 LGLSPAQLQRLSSLASLPWSIK-P-LYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA--IAVVLLFL   95 (433)
T ss_pred             cCCCHHHHHHHHHHHhCchHHh-h-hHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh--hHHHHHHH
Confidence            8999999888887766665554 3 566777765     3666666677666555555544433111111  11222233


Q ss_pred             HHhhhHHHHHHHHHHhhhcC--CcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHH
Q 014682          327 KNLLSVSIITGLFILQNRAV--DQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEA  404 (420)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~  404 (420)
                      ..++....-....+...|..  .|+.+|...+.......+|+.++..+.|.+.+..          +++..|.+.+.+..
T Consensus        96 a~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~----------~~~~~f~i~~~~~~  165 (433)
T PF03092_consen   96 ASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF----------GPQGVFLISAALPL  165 (433)
T ss_pred             HHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC----------CCeEEehHHHHHHH
Confidence            33344444445555665554  2334889999999999999999999999999887          66777777777666


Q ss_pred             HHHHHHhh
Q 014682          405 IGVLMTFK  412 (420)
Q Consensus       405 ~~~~~~~~  412 (420)
                      +..+....
T Consensus       166 l~~~~~~~  173 (433)
T PF03092_consen  166 LMLIVALF  173 (433)
T ss_pred             HHHHHHHH
Confidence            66544444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.40  E-value=0.02  Score=51.80  Aligned_cols=51  Identities=12%  Similarity=0.034  Sum_probs=33.8

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhh
Q 014682          321 NCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPA  371 (420)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~  371 (420)
                      .....+.++..+-.......+..+.+|++++-.+-.+...+-..|-+.|..
T Consensus       347 ~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~  397 (406)
T KOG1479|consen  347 IFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSL  397 (406)
T ss_pred             HHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhH
Confidence            344444455556666777788888888888877777766666666655554

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.37  E-value=0.0032  Score=42.62  Aligned_cols=68  Identities=18%  Similarity=0.247  Sum_probs=50.8

Q ss_pred             HHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 014682          223 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  297 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (420)
                      ..+++..........+.+.|+.+      .|+++.++|.+.++..+..+++.. +.+.+.||.++++........
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~------~Gl~~~~iGil~~i~~~~~~~~~p-l~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQ------LGLSPSQIGILSAIRPLIRFLAPP-LWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhh------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCccHHHHHHHHH
Confidence            34455555556666677777654      699999999999999999999988 677888888877766555443

>PRK03612 spermidine synthase; Provisional

Probab=97.29  E-value=0.14  Score=49.14  Aligned_cols=164  Identities=16%  Similarity=0.055  Sum_probs=83.0

Q ss_pred             HHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH--
Q 014682          226 CVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT--  303 (420)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  303 (420)
                      ++..++...+.....-.+...     +|-+....+.+.++.-.+..+|+. +++++.++..+ +....-..+..++.+  
T Consensus        24 f~sg~~~L~yEv~~~r~l~~~-----~G~s~~~~~~ii~~fl~glalGs~-l~~~~~~~~~~-~~~~~e~~i~l~~~~~~   96 (521)
T PRK03612         24 FVCAACGLVYELLLGTLASYL-----LGDSVTQFSTVIGLMLFAMGVGAL-LSKYLLRDAAA-GFVAVELLLALLGGLSA   96 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHHHHHHHHHHHH-HHHhhhhhHHH-HHHHHHHHHHHHHHHHH
Confidence            344444455554444444433     677777777777776666666665 44454433222 211111111111111  


Q ss_pred             -HHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHH-hhh
Q 014682          304 -SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFS-WAQ  381 (420)
Q Consensus       304 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~  381 (420)
                       ++...... ............+..++..+...|....+..+ ...++.++..|-......+|+.+|+.+.+.+.- .. 
T Consensus        97 ~ll~~~~~~-~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~-~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~l-  173 (521)
T PRK03612         97 LILYAAFAF-QGLSRLLLYVLVLLIGLLIGMEIPLLMRILQR-IRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRL-  173 (521)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhc-
Confidence             11111110 01111112222333344445556665555544 222345677888889999999999999988776 44 


Q ss_pred             hccCCCCCCCchHHHHHHHHHHHHHHH
Q 014682          382 KRLDASFLPGSQMVFFVLNVVEAIGVL  408 (420)
Q Consensus       382 ~~~~~~~~~g~~~~f~~~~~~~~~~~~  408 (420)
                               |.....++.+.+.++..+
T Consensus       174 ---------G~~~t~~~~a~l~~~~a~  191 (521)
T PRK03612        174 ---------GLIRTAALTGSLNLLAAL  191 (521)
T ss_pred             ---------chHHHHHHHHHHHHHHHH
Confidence                     555555555555544443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.17  E-value=0.22  Score=46.85  Aligned_cols=125  Identities=8%  Similarity=0.017  Sum_probs=81.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhH-------------------
Q 014682          255 STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFG-------------------  315 (420)
Q Consensus       255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  315 (420)
                      +.+....+.+..-+...+.-..+..++.+|.+|+++.............++.+...+....                   
T Consensus        41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~  120 (472)
T TIGR00769        41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM  120 (472)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence            4456666666554544444233677888888998888776666555555544432111000                   


Q ss_pred             ------HHHHHHHHHHHHHhhhHHHHH-HHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHh
Q 014682          316 ------LAFLLNCASVVKNLLSVSIIT-GLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW  379 (420)
Q Consensus       316 ------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  379 (420)
                            ..+...+..+.....+....+ ..+..++|..++++..+-.++.....++|..+++.+...+.+.
T Consensus       121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~  191 (472)
T TIGR00769       121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKL  191 (472)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  011111222333344455555 7889999999999999999999999999999999998888754

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.98  E-value=0.24  Score=45.32  Aligned_cols=159  Identities=9%  Similarity=0.032  Sum_probs=102.2

Q ss_pred             HHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014682          235 YSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF  314 (420)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (420)
                      ...++..|+..+    ..|++.++..--..+...=+-+..++....+.|..+.|+++....+...+...++.+..+..  
T Consensus        22 sEPfl~~yL~~~----~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~--   95 (412)
T PF01770_consen   22 SEPFLTPYLTGP----DKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVL--   95 (412)
T ss_pred             CCccchHHHcCC----ccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHH--
Confidence            334444454433    25788887765554444444444555778899999999999999888777777766654322  


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchH
Q 014682          315 GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQM  394 (420)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~  394 (420)
                          .+-+..+..+.. .+.-...++++-..+|+++--++.+......-+|..++..++-.+.....        .++..
T Consensus        96 ----~mq~~q~~yg~~-~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~--------~sy~~  162 (412)
T PF01770_consen   96 ----AMQLMQFFYGLA-TAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG--------VSYFQ  162 (412)
T ss_pred             ----HHHHHHHHHHHH-HHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCHHH
Confidence                222333333333 33345556666666889999999999999999998888888777766432        14666


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 014682          395 VFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       395 ~f~~~~~~~~~~~~~~~~  412 (420)
                      ...+......++.++.++
T Consensus       163 L~~isl~~~~~a~~~~~f  180 (412)
T PF01770_consen  163 LNYISLASVSLALLIALF  180 (412)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666655555555555444

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.85  E-value=0.21  Score=43.85  Aligned_cols=135  Identities=19%  Similarity=0.074  Sum_probs=86.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHH
Q 014682          257 QMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIIT  336 (420)
Q Consensus       257 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (420)
                      ...+.......+....+.. ..+.+.||.|||+....+......+.+.......    .............+.......+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~  113 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSL-LAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN----VGLALLLILRLLQGLGGGGLLP  113 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhh-hhhhccccccchHHHHHHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHhhhHHHHH
Confidence            4567777777777777765 6777777778886666666543333222222221    1122222333334555567888


Q ss_pred             HHHHHhhhcCCc-chhhHHhhHHHH-HHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHH
Q 014682          337 GLFILQNRAVDQ-DQRGAANGIAMT-GMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEA  404 (420)
Q Consensus       337 ~~~~~~~~~~~~-~~~g~~~g~~~~-~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~  404 (420)
                      ....+..+..|+ ++|+...+.... ...++..++|.+.+.+.+. ..       .+|+..|........
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~  175 (338)
T COG0477         114 VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LL-------WGWRAAFLLAALLGL  175 (338)
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-------cchHHHHHHHHHHHH
Confidence            888999998887 688999998888 5788889999888877776 11       167775655554443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.80  E-value=0.00024  Score=67.89  Aligned_cols=163  Identities=13%  Similarity=0.001  Sum_probs=2.7

Q ss_pred             cCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhh---------------
Q 014682          248 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS---------------  312 (420)
Q Consensus       248 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  312 (420)
                      .++.++++..+.|.+.+..-++..+..++++.+ ..|..|.+.+..+.++.+++.+++.+-+...               
T Consensus        29 iErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~-g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~  107 (539)
T PF03137_consen   29 IERRFGLSSSQSGLISSSYDIGSLVVVLFVSYF-GGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNS  107 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccc
Confidence            455699999999999999999999998855544 5555777788888888887776654321100               


Q ss_pred             -----------------------------hhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHH
Q 014682          313 -----------------------------GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS  363 (420)
Q Consensus       313 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  363 (420)
                                                   ....+.++++..++.|++....++.-.+++.|.+++++.+...|+......
T Consensus       108 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~  187 (539)
T PF03137_consen  108 SISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSI  187 (539)
T ss_dssp             --------------------------------------------SSS---------------------------------
T ss_pred             ccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhh
Confidence                                         001345666777888888889999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhHHHHhhhhccCCC--------C----CCCchHHHHHHHHHHHHHHHHHh
Q 014682          364 LFKAAGPAGGGALFSWAQKRLDAS--------F----LPGSQMVFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       364 ~g~~~g~~~~g~l~~~~~~~~~~~--------~----~~g~~~~f~~~~~~~~~~~~~~~  411 (420)
                      +|-++|-.+++...+..-+.....        .    .+.|..-|++.+.+.++..+...
T Consensus       188 lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~  247 (539)
T PF03137_consen  188 LGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLF  247 (539)
T ss_dssp             ------------------------------------------------------------
T ss_pred             ccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999888888776543322111        1    12355555556666555544443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.51  E-value=0.025  Score=51.99  Aligned_cols=114  Identities=9%  Similarity=-0.021  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcc---hhhHHhhHHHHHH
Q 014682          289 MVARIAGVLTIPLLTSYPYIAMLSGF---GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD---QRGAANGIAMTGM  362 (420)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~  362 (420)
                      +.+..+.++..++.+++.........   .....+++...+.+.+.++.=|...++..|.++++   +|.+.+.......
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            34566677777777665444332211   12223444455566777888899999999988765   5667777788889


Q ss_pred             HHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          363 SLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       363 ~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      ++|..+++.+.+++.++.          +|...|.+.++..+++.+..+.
T Consensus        82 n~G~~~~~~~~~~i~~~~----------~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNY----------GWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-----------HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhcccc----------chhhhhhHHHHHHHHHHHHHHh
Confidence            999999999999999887          8999999999988888776654

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.39  E-value=0.014  Score=56.85  Aligned_cols=163  Identities=12%  Similarity=0.003  Sum_probs=119.8

Q ss_pred             CCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhh----------------
Q 014682          249 LGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS----------------  312 (420)
Q Consensus       249 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  312 (420)
                      .+.++++..+.|++.+.+-++..+...++ .+..-|..|.+.+..+.++++++.++..+-+...                
T Consensus       124 ErRF~i~Ss~sG~I~s~~dig~~l~i~fV-sYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~  202 (735)
T KOG3626|consen  124 ERRFKISSSQSGLIASSYDIGNLLLIIFV-SYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVEN  202 (735)
T ss_pred             hhhcCCCCCcceeEeeecccchhhhhHhH-HHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccC
Confidence            34488999999998888888888876644 4444555777888888888887777655431100                


Q ss_pred             ------------------------------hhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHH
Q 014682          313 ------------------------------GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM  362 (420)
Q Consensus       313 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  362 (420)
                                                    ....+.+++...++.|.+....++.-.+++.|.+.+++.....|+..++.
T Consensus       203 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~  282 (735)
T KOG3626|consen  203 PSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMA  282 (735)
T ss_pred             CccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHH
Confidence                                          00146677778888899999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhHHHHhhhhc-cC--------CCCCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          363 SLFKAAGPAGGGALFSWAQKR-LD--------ASFLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       363 ~~g~~~g~~~~g~l~~~~~~~-~~--------~~~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      .+|=++|-.+++.+....-+. ..        +.-.+.|..-|++++.+.++..+..+.
T Consensus       283 ~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~  341 (735)
T KOG3626|consen  283 ILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFF  341 (735)
T ss_pred             HhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999888888776554 11        111224666667777777777666554

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.059  Score=50.06  Aligned_cols=107  Identities=16%  Similarity=0.301  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhh---hcCCchhHHHHHHHHHHHHHHHhhh------------------hhHHHHHHHHH
Q 014682           19 GYVGSSFMFGRALTSVFWGLVAD---RYGRKPVIIMGTASVVIFNTLFGLS------------------VNFWMAVLTRF   77 (420)
Q Consensus        19 g~~~s~~~~~~~~~~~~~g~l~d---r~Grk~~l~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~   77 (420)
                      ++-.-...++..+++.+.+.+++   |+||++.+.++..+..+..++.-..                  +++....+.-+
T Consensus       282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~  361 (461)
T KOG3098|consen  282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF  361 (461)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence            33333344455555555666664   6899999999888888887776552                  24556777788


Q ss_pred             Hhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhH
Q 014682           78 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  126 (420)
Q Consensus        78 l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  126 (420)
                      +.|++.+..... +..+.+.. +++|..+.++...-..++..++-.....
T Consensus       362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            999999988887 88888888 5778888888887777777665554433

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=96.12  E-value=0.0018  Score=57.59  Aligned_cols=53  Identities=11%  Similarity=0.019  Sum_probs=3.0

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhh
Q 014682          321 NCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGG  373 (420)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~  373 (420)
                      ++..++.++..+-..........+..++++|..+..+....-.+|-.+|..+.
T Consensus       252 ~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  252 IILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             ---------------HHHH----------------------------------
T ss_pred             HHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555666666777777888888889998888887777777777776543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.11  E-value=0.058  Score=49.19  Aligned_cols=107  Identities=16%  Similarity=0.230  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHH--HHH---HHHHHHhhhhhHHHHHHHHHHhhhhccchhhh-Hh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA--SVV---IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KA   91 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~--~~~---~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~   91 (420)
                      ..+....|.+|-.++.--...+  |+  |++.+.+.+  +..   +.....-+.++.|..++.-+..|+.+|..+.. ..
T Consensus       283 Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~  358 (402)
T PF02487_consen  283 YRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFY  358 (402)
T ss_pred             HHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            6777788888777765433221  33  444333322  222   22223344688999999999999988888775 88


Q ss_pred             hhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhc
Q 014682           92 YACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  128 (420)
Q Consensus        92 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~  128 (420)
                      .+.|..|+++|..+++..+.+-++|..++..++-.+-
T Consensus       359 ~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  359 RISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            8888899999999999999999999999998876654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.56  E-value=0.26  Score=33.81  Aligned_cols=71  Identities=21%  Similarity=0.176  Sum_probs=54.3

Q ss_pred             hhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q 014682          232 DMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA  309 (420)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (420)
                      -+.+...+|....+      .++|..+.|.+.+.+.++..++.+ ...++.++.++++.+..+.+...+..+...+..
T Consensus         8 RFayTplLP~M~~~------~~ls~~~ag~lasaNy~GYL~GAl-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen    8 RFAYTPLLPLMQAD------GGLSLSQAGWLASANYLGYLVGAL-LASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             HHHHHhHhHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555566655443      699999999999999999999988 666777766778888888888777777766544

Note that many members are hypothetical proteins.

>PRK03612 spermidine synthase; Provisional

Probab=95.53  E-value=0.2  Score=48.08  Aligned_cols=110  Identities=15%  Similarity=0.104  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHH---HHHHHHHhhhh----hH-HHHHHHHHHhhhhccchhhh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV---VIFNTLFGLSV----NF-WMAVLTRFLLGSLNGLLGPI   89 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~---~~~~~~~~~~~----~~-~~l~~~r~l~G~~~g~~~~~   89 (420)
                      .+.+.+++..|..+|+...+++.++--|+.. ..-+.+.   .++..+.....    .+ ..+...-++.++..|...|.
T Consensus        52 ~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl  130 (521)
T PRK03612         52 FSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPL  130 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999888744322222 1111111   11111111111    11 11233345567777777776


Q ss_pred             -HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhcc
Q 014682           90 -KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        90 -~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  129 (420)
                       ..+..+.. .++-++..|-......+|.++|+++.+++.-
T Consensus       131 ~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl  170 (521)
T PRK03612        131 LMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLL  170 (521)
T ss_pred             HHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence             44443322 2234667788888999999999998888764

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.43  E-value=2.3  Score=39.71  Aligned_cols=178  Identities=13%  Similarity=0.024  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 014682          218 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  297 (420)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (420)
                      .+.+....++.....-.+....+.++.+.     +.-+-...+..-..-.+..++.+..++.++|+. .|.+........
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i-----~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~   77 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISI-----FPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVV   77 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHH
Confidence            34455555666555555555666666544     222333334444444555555656567777654 777776665443


Q ss_pred             HHHH----HHHHHHHHHhhh-----hHHHHHHHHHHHHHHhhhHHHHHHHHHHh-----hhc--CCcchhhHHhhHHHHH
Q 014682          298 TIPL----LTSYPYIAMLSG-----FGLAFLLNCASVVKNLLSVSIITGLFILQ-----NRA--VDQDQRGAANGIAMTG  361 (420)
Q Consensus       298 ~~~~----~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~g~~~g~~~~~  361 (420)
                      .-..    ..++........     ......++......+...-.........+     ..+  -+++...+..+.+.-+
T Consensus        78 Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRI  157 (432)
T PF06963_consen   78 QNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRI  157 (432)
T ss_pred             HHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHH
Confidence            3222    222211111111     11122222222222222212111111111     111  2456666677766667


Q ss_pred             HHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014682          362 MSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       362 ~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~  411 (420)
                      -.+...++|.+.|.+.+..          +......+.++..+++...=+
T Consensus       158 DL~ckllaPl~vG~l~t~~----------s~~~~~~~i~~~N~~S~~vEy  197 (432)
T PF06963_consen  158 DLFCKLLAPLFVGLLMTFA----------SPVIAAIFIAGWNLASVFVEY  197 (432)
T ss_pred             HHHHHHHHHHHHHHHhhcc----------CHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999987          677777778888777766543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=94.58  E-value=3  Score=36.80  Aligned_cols=100  Identities=14%  Similarity=0.140  Sum_probs=65.3

Q ss_pred             HHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhh-Hhhhhhhchh--hhh
Q 014682           26 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE--EHQ  102 (420)
Q Consensus        26 ~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~--~~r  102 (420)
                      .+.-+.++.+.+.+..++|-|.++.++.......-. .-+=+.+..++-.-...|++.+..+.. -+|+++.-..  ++|
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~  146 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQR  146 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhh
Confidence            344455666666899999999999888776654332 224467889999999999999887776 5666555432  334


Q ss_pred             -------------hhHHHHHHHHhHHHHHHHHHHHhH
Q 014682          103 -------------ALGLSTVSTAWGIGLIIGPALGGF  126 (420)
Q Consensus       103 -------------~~~~~~~~~~~~~g~~~g~~l~~~  126 (420)
                                   +..+.++....-.|..+...+-..
T Consensus       147 ~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~~  183 (390)
T KOG3097|consen  147 GEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMTL  183 (390)
T ss_pred             hhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         233445555555555555544433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=93.15  E-value=0.34  Score=44.56  Aligned_cols=122  Identities=16%  Similarity=0.022  Sum_probs=79.6

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hchHH-HHHHHHHHHHHHHHHHHHHHHhhhh-----------H
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI----LGPIM-VARIAGVLTIPLLTSYPYIAMLSGF-----------G  315 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------~  315 (420)
                      .|.+....+.+.....+.+++.+. +.+..+||    +|||| .+..+.....++++++++.......           .
T Consensus        62 lGvphk~~S~iw~~gPi~G~~vQP-~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~r  140 (498)
T KOG0637|consen   62 LGVPHKWSSIIWLCGPLSGLLVQP-LVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPR  140 (498)
T ss_pred             cCCCcccccccccccccccceecc-cccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchH
Confidence            688888888888887888888888 44444554    55544 5555566666666666665432210           1


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhH-HhhHHHHHHHHHHHHhhhhhh
Q 014682          316 LAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGA-ANGIAMTGMSLFKAAGPAGGG  374 (420)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~~~g~~~g~~~~g  374 (420)
                      .....++...+.=+.........-++..+...++++.+ +.+....+..+|+.+|-.+.+
T Consensus       141 ai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  141 AIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             HHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence            11222222223334445666677888888887777777 999999999999988877665

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=92.49  E-value=1.2  Score=39.99  Aligned_cols=103  Identities=13%  Similarity=0.045  Sum_probs=58.3

Q ss_pred             HHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHh------hh------hhHHHHHHHHHHhhhhccc--hhh-hHh
Q 014682           27 FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG------LS------VNFWMAVLTRFLLGSLNGL--LGP-IKA   91 (420)
Q Consensus        27 ~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~------~~------~~~~~l~~~r~l~G~~~g~--~~~-~~~   91 (420)
                      ....+..++.|...|+..|+|++...+.+.=++.+.++      +.      .+++.+..+-.+.-...+.  ... +.+
T Consensus        74 gs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~  153 (503)
T KOG2601|consen   74 GSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGT  153 (503)
T ss_pred             hHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            34566778889999999999998777665444333332      21      2455555544443332221  111 111


Q ss_pred             --hhhhhc----hhhhh---hhHHHHHHHHhHHHHHHHHHHHhHhcc
Q 014682           92 --YACEIF----REEHQ---ALGLSTVSTAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        92 --~i~~~~----~~~~r---~~~~~~~~~~~~~g~~~g~~l~~~l~~  129 (420)
                        .-.||.    ..|.+   .+..+.....-..-..+.|.+-|.+..
T Consensus       154 i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iit  200 (503)
T KOG2601|consen  154 ILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIIT  200 (503)
T ss_pred             EEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccce
Confidence              123333    22333   344466666666778889999998887

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=91.54  E-value=11  Score=34.62  Aligned_cols=40  Identities=15%  Similarity=0.112  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhh
Q 014682          316 LAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANG  356 (420)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  356 (420)
                      .....++.....+..............++ .|++.....++
T Consensus       116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~  155 (406)
T KOG1479|consen  116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMS  155 (406)
T ss_pred             hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHh
Confidence            33334444444555555666666666666 77775544443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=91.48  E-value=6.5  Score=35.71  Aligned_cols=37  Identities=11%  Similarity=-0.089  Sum_probs=22.4

Q ss_pred             HHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhh
Q 014682          337 GLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGG  373 (420)
Q Consensus       337 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~  373 (420)
                      ......-.+..+++-|-+........+.|.+++..+.
T Consensus       153 AVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  153 AVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             hhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence            3444455556778877777665555566666655443

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=90.03  E-value=16  Score=35.80  Aligned_cols=149  Identities=17%  Similarity=0.087  Sum_probs=90.5

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHhh------------------
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPIMVARIAGVLTIPLLTSYPYIAMLS------------------  312 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  312 (420)
                      ++.+...+........-......+ .+++++|. .||-+.+.++.++..++..++......+                  
T Consensus        68 ~~~~~~~aa~~v~~f~G~~~~~~l-~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~  146 (571)
T KOG1237|consen   68 LHASGGGAANNVNAFGGTQFLLPL-LGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCES  146 (571)
T ss_pred             hccchHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccC
Confidence            455555555555554444444434 66666664 6888888888888777765554443322                  


Q ss_pred             -hhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcc----hhh--HHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccC
Q 014682          313 -GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD----QRG--AANGIAMTGMSLFKAAGPAGGGALFSWAQKRLD  385 (420)
Q Consensus       313 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g--~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~  385 (420)
                       +......+.........+.++.-|.....-++.++++    .+.  .-+.......+.|..++..+.-++.+..     
T Consensus       147 ~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-----  221 (571)
T KOG1237|consen  147 PSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV-----  221 (571)
T ss_pred             cchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc-----
Confidence             1112233344444444566677788888888888722    222  4455555666777777777766666655     


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHh
Q 014682          386 ASFLPGSQMVFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       386 ~~~~~g~~~~f~~~~~~~~~~~~~~~  411 (420)
                           +|...|.+..+...++.++.+
T Consensus       222 -----~w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  222 -----GWKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             -----cceeeccHHHHHHHHHHHHHH
Confidence                 788888877777776655543

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=89.22  E-value=1.3  Score=37.85  Aligned_cols=146  Identities=14%  Similarity=0.044  Sum_probs=73.3

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 014682          251 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL  330 (420)
Q Consensus       251 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (420)
                      .+|+...++|.++.......++.+. +.+-+.||.|||+.....++...++++.=       .....-++++.-.+.+..
T Consensus        66 tYgFgkG~IgqLfiaGfgSsmLFGt-ivgSLaDkqGRKracvtycitYiLsCiTK-------hSpqYkVLmVGR~LGGia  137 (454)
T KOG4332|consen   66 TYGFGKGDIGQLFIAGFGSSMLFGT-IVGSLADKQGRKRACVTYCITYILSCITK-------HSPQYKVLMVGRVLGGIA  137 (454)
T ss_pred             hcCccCCccceeeecccchHHHHHH-HHHHHHhhhccccceeeehHHHHHHHHhh-------cCCceEEEeehhhhhhHH
Confidence            3788888888877664445555555 55666777799987666655555444321       001111233333333333


Q ss_pred             hHHHHHHHHH-HhhhcC-----CcchhhHHhhHHH-HHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHH
Q 014682          331 SVSIITGLFI-LQNRAV-----DQDQRGAANGIAM-TGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVE  403 (420)
Q Consensus       331 ~~~~~~~~~~-~~~~~~-----~~~~~g~~~g~~~-~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~  403 (420)
                      ....++..-+ ++.|..     |.+-...-++=.. ..+.+-++++...+..+.|...        .|.-.+|-..+++.
T Consensus       138 TsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~s--------lGPVAPFdAAacfL  209 (454)
T KOG4332|consen  138 TSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFS--------LGPVAPFDAAACFL  209 (454)
T ss_pred             HHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--------cCCCCchHHHHHHH
Confidence            3444444333 344433     2222222222111 2223344444444445555542        25666777777766


Q ss_pred             HHHHHHHhh
Q 014682          404 AIGVLMTFK  412 (420)
Q Consensus       404 ~~~~~~~~~  412 (420)
                      .++..+.+.
T Consensus       210 aigmAvil~  218 (454)
T KOG4332|consen  210 AIGMAVILS  218 (454)
T ss_pred             HHHHHHHHh
Confidence            666655543

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=89.13  E-value=2  Score=37.49  Aligned_cols=75  Identities=15%  Similarity=0.173  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhc
Q 014682           54 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  128 (420)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~  128 (420)
                      +++.+......+.++++...+.-+..|+-+|..++. .--+.+-.++++|-.+++....+-++|..++..++-.+-
T Consensus       327 l~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh  402 (409)
T KOG3880|consen  327 LLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH  402 (409)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence            344455556667899999999999999977776664 666777778889999999999999999998887775543

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=89.08  E-value=22  Score=34.06  Aligned_cols=123  Identities=8%  Similarity=-0.002  Sum_probs=72.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhh-----hh---------------
Q 014682          255 STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS-----GF---------------  314 (420)
Q Consensus       255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------------  314 (420)
                      +++.+..+=...-+...+.-..+..++.++.++.++.............++++.-.+.     ..               
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            4555554433323322222233567777888888877765555544444443321110     00               


Q ss_pred             ------HHHHHHHHHHHHHHhhhHHHHH-HHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHH
Q 014682          315 ------GLAFLLNCASVVKNLLSVSIIT-GLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFS  378 (420)
Q Consensus       315 ------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  378 (420)
                            ..|. .....+..-..+....+ ..+.+++|..+.++..+..++.....++|..++..+...+.+
T Consensus       136 ~~i~~~~~Wt-~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  136 GFIAMFRNWT-FSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  0111 11112222223333333 578999999999999999999999999999999998888877

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=87.10  E-value=7.3  Score=36.64  Aligned_cols=110  Identities=15%  Similarity=0.054  Sum_probs=73.9

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhhcCCc-hhHHHHHHHHHH---HHHHHhh---------hhhHHHHHHHHHHhhhhc
Q 014682           17 YAGYVGSSFMFGRALTSVFWGLVADRYGRK-PVIIMGTASVVI---FNTLFGL---------SVNFWMAVLTRFLLGSLN   83 (420)
Q Consensus        17 ~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk-~~l~~~~~~~~~---~~~~~~~---------~~~~~~l~~~r~l~G~~~   83 (420)
                      +.-.....+.++-.+|..+..+. ..-++| +.+.+..+.-.+   ..++|..         -++-+..++.-++.|+..
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~-~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKF-MWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhee-EeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            34566777888888888755432 111222 133333333222   2233322         235566777789999999


Q ss_pred             cchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHh
Q 014682           84 GLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  127 (420)
Q Consensus        84 g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  127 (420)
                      |-.... ..+..+..++++|..+-.+...+..+|..+|..++-.+
T Consensus       387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988776 88888889999999999999999999999998876443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=80.03  E-value=14  Score=31.65  Aligned_cols=103  Identities=19%  Similarity=0.187  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhh-cCCchhHH----HHHHHHHHHHHHHhh-h----hhHHHHHHHHHHhhhhccchh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII----MGTASVVIFNTLFGL-S----VNFWMAVLTRFLLGSLNGLLG   87 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr-~Grk~~l~----~~~~~~~~~~~~~~~-~----~~~~~l~~~r~l~G~~~g~~~   87 (420)
                      .....-++..|..+|....|+++.. +.||+.+.    .++++..++.+.... .    .++..+++.-++.|++.=...
T Consensus       143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ  222 (267)
T PF07672_consen  143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ  222 (267)
T ss_pred             hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence            4555666777777888888888774 45666543    334444444444211 1    246677888888888653444


Q ss_pred             hhHhhhhhhchhhhhhhHHHHHHHHhHHHHHHH
Q 014682           88 PIKAYACEIFREEHQALGLSTVSTAWGIGLIIG  120 (420)
Q Consensus        88 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  120 (420)
                      ++.-.+...+++.++.+.--..+..+++|.++=
T Consensus       223 ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~y  255 (267)
T PF07672_consen  223 GVILNLPHEYKGYNPKKIGIQFGLIWGFGYIFY  255 (267)
T ss_pred             HHHhcChhhhcCCCcceehhHHHHHHHHHHHHH
Confidence            444445555554444444445566677776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	420
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	1e-08
2cfq_A	417	Lactose permease; transport, transport mechanism,	1e-06
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-05
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	9e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 6e-09
 Identities = 73/444 (16%), Positives = 125/444 (28%), Gaps = 146/444 (32%)

Query: 21  VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---------------- 64
           V     F      +FW  +  +    P  ++      +   L                  
Sbjct: 176 VQCKMDFK-----IFW--LNLKNCNSPETVL-----EMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 65  -LSVNFWMAVLTRFLLGSL--NGLL--------GPIKAYA--CEIF---REEHQALGLST 108
            L ++   A L R L      N LL            A+   C+I    R +     LS 
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 109 VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF----PYFLP---C----LCIS 157
            +T     + +          P E        +SL  K+    P  LP          +S
Sbjct: 284 ATT---THISLDHHSMTL--TPDE-------VKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 158 LFA--------------------FGVTIAAFW--LPETLHRHNDDD-----DSCDVSYDA 190
           + A                        I +    L    +R   D       S  +    
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 191 LESASAEVKEEEGREATP---KKSLLKNWPLMSSIIVYCVF-----------SLHDM--- 233
           L     +V + +         K SL++  P  S+I +  ++           +LH     
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 234 AYSEI--FSLWANSPKKLGGLNYSTQMVGEVLA-------ITGFSLLVFQLSLYPFLE-- 282
            Y+    F      P  L    Y    +G  L        +T F ++        FLE  
Sbjct: 452 HYNIPKTFDSDDLIPPYLD--QYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---FLEQK 506

Query: 283 -RILGPIMVARIAGVLTIPLLTSY-PYI--------AMLSGFGLAFLLNCASVV-----K 327
            R       A  + + T+  L  Y PYI         +++   L FL      +      
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYT 565

Query: 328 NLLSVSIIT---GLFILQNRAVDQ 348
           +LL ++++     +F   ++ V +
Sbjct: 566 DLLRIALMAEDEAIFEEAHKQVQR 589

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 27/158 (17%), Positives = 67/158 (42%), Gaps = 18/158 (11%)

Query: 23  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 82
            +++    ++ +F+G ++DR GR+PVI++G +  ++   +   + +  + +    + G +
Sbjct: 42  GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG-M 100

Query: 83  NGLLGPIKAYAC--EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS 140
              +G + A     +++         S ++    +  ++ P +GG L         +++ 
Sbjct: 101 GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------MWNW 153

Query: 141 ESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 178
            + +     FL  LC  +        A W+PET     
Sbjct: 154 RACY----LFLLVLCAGVTF----SMARWMPETRPVDA 183

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 51/409 (12%), Positives = 114/409 (27%), Gaps = 65/409 (15%)

Query: 15  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI---------FNTLFGL 65
            S  G + ++      L    +GL++D+ G +  ++     +++         F  L   
Sbjct: 42  KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101

Query: 66  SVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALG 124
           ++     V   +L    N     ++A+  ++ R  +   G + +   +G +G  +G ++ 
Sbjct: 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARM---FGCVGWALGASIV 158

Query: 125 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSC 184
           G                 +F     F+  L          +  F   +            
Sbjct: 159 GI----------------MFTINNQFVFWLGSGCALILAVLLFFAKTDAPS--------- 193

Query: 185 DVSYDALESASAEVKEEEGREATPKKSLLKNWPLMS-SIIVYCVFSLHDMAYSEIFSLWA 243
                +   A+A               L +   L   S+ V  V   +D+   +  + + 
Sbjct: 194 -----SATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFT 248

Query: 244 NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT 303
           +           T++ G V  +               + RI G      +AG +    + 
Sbjct: 249 SFFATGE---QGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRII 304

Query: 304 SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI-AMTGM 362
              +        +   L+   V        ++ G F       +         +      
Sbjct: 305 GSSFATSALEVVILKTLHMFEV------PFLLVGCFKYITSQFEVRFSATIYLVCFCFFK 358

Query: 363 SLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 411
            L         G ++             G Q  + VL +V     L++ 
Sbjct: 359 QLAMIFMSVLAGNMYESI----------GFQGAYLVLGLVALGFTLISV 397

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 27/217 (12%), Positives = 55/217 (25%), Gaps = 30/217 (13%)

Query: 19  GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 78
           G+  S        +    G V+DR   +  +  G           G       ++   F+
Sbjct: 65  GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 124

Query: 79  LGSLNGLL-GPIKAYACEI----FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 133
           L  L G   G             + ++ +   +S  + A  +G  I P L          
Sbjct: 125 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA---- 180

Query: 134 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-----PETLHRHNDDDDSCDVSY 188
                   +                    + +A F                 +   +   
Sbjct: 181 --WFNDWHAAL-----------YMPAFCAILVALFAFAMMRDTPQSCGLPPIE---EYKN 224

Query: 189 DALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVY 225
           D  +  + + ++E   +    + +L N  L    I  
Sbjct: 225 DYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN 261

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 43.4 bits (102), Expect = 9e-05
 Identities = 45/324 (13%), Positives = 91/324 (28%), Gaps = 48/324 (14%)

Query: 18  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV---NFWMAVL 74
           AG + S+F FG  +  +  G++  +   K  II G     +   LF  +    N+ + ++
Sbjct: 63  AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122

Query: 75  TRFLLGSLNGLLG-PIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL------ 127
             F++ +  G L      +   +  E      L+   T    G II    G  L      
Sbjct: 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182

Query: 128 --------AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 179
                       E+      S  L  + PY +    + L A  + +     P     ++ 
Sbjct: 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK--FPALQSDNHS 240

Query: 180 DDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF 239
           D                    ++G  +     L +      +++    +     A     
Sbjct: 241 D-------------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYL 281

Query: 240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-----LGPIMVARIA 294
             +A           +       L  T     + + +    + R      L    +  +A
Sbjct: 282 IRYAVEE----IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337

Query: 295 GVLTIPLLTSYPYIAMLSGFGLAF 318
             L       +  +  L+      
Sbjct: 338 LCLISAFAGGHVGLIALTLCSAFM 361

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	420
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.97
2xut_A	524	Proton/peptide symporter family protein; transport	99.95
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.51
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.47
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.46
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.37
2xut_A	524	Proton/peptide symporter family protein; transport	99.36
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.34
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.1

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=2.8e-38  Score=296.71  Aligned_cols=366  Identities=13%  Similarity=0.048  Sum_probs=284.0

Q ss_pred             CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhh----hhhHHHHHHHH
Q 014682            1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL----SVNFWMAVLTR   76 (420)
Q Consensus         1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r   76 (420)
                      +.+|+ .+.++      .|++.+++.++..++++++|+++||+|||++++.+.++.+++.+++++    ++|++.++++|
T Consensus        54 ~~~~~-~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  126 (451)
T 1pw4_A           54 LVEQG-FSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL  126 (451)
T ss_dssp             TTSST-TCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHH
T ss_pred             HHHHh-ccHhH------HHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence            35678 88889      999999999999999999999999999999999999999999999999    99999999999


Q ss_pred             HHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCcccc-ccccccCccchHHHH
Q 014682           77 FLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS-SESLFGKFPYFLPCL  154 (420)
Q Consensus        77 ~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~g-w~~~~~~~~~~~~~~  154 (420)
                      +++|++.+...+. .+++.|++|+|+|++++++.+.+.++|.+++|.+++.+.+       ..| ||+.|         .
T Consensus       127 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~~g~w~~~f---------~  190 (451)
T 1pw4_A          127 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA-------WFNDWHAAL---------Y  190 (451)
T ss_dssp             HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH-------HTCCSTTCT---------H
T ss_pred             HHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhccHHHHH---------H
Confidence            9999999988887 9999999999999999999999999999999999999887       566 77766         5


Q ss_pred             HHHHHHHH-HHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCc--hhhhccchhHHHHHHHHHHHHhh
Q 014682          155 CISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP--KKSLLKNWPLMSSIIVYCVFSLH  231 (420)
Q Consensus       155 ~~~~~~~~-~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  231 (420)
                      +.++..++ .++..+.+||++++.+.+++++.+..++.  .. +++++++....+  .++.+|+|.++...+..++....
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (451)
T 1pw4_A          191 MPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD--DY-NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL  267 (451)
T ss_dssp             HHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC----------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccc--cc-hhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHH
Confidence            55555544 34456778888765433222111110000  00 001111111111  46788999999888888888887


Q ss_pred             hhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHH-HHHHHHHHH
Q 014682          232 DMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL--GPIMVARIAGVLTI-PLLTSYPYI  308 (420)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~  308 (420)
                      ......+.|.|+.+.     +|+++.+.+...+..+++.+++.+ +.+++.||+  ++|+.+..+..+.. ++.+.+...
T Consensus       268 ~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (451)
T 1pw4_A          268 RYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN  341 (451)
T ss_dssp             HHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh
Confidence            788888888888765     789999999999999999999987 778888888  88888777666555 444444332


Q ss_pred             HHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHH-HHHHhhhhhhHHHHhhhhccCCC
Q 014682          309 AMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL-FKAAGPAGGGALFSWAQKRLDAS  387 (420)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~g~~~~g~l~~~~~~~~~~~  387 (420)
                      ..   .. .........+.+++.....+....+..|..|+++|+++.|+.+...++ |..++|.+.|.+.|..       
T Consensus       342 ~~---~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-------  410 (451)
T 1pw4_A          342 PA---GN-PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-------  410 (451)
T ss_dssp             CT---TC-HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-------
T ss_pred             cc---cC-HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence            11   11 122333334445555667777788999999999999999999999999 9999999999999987       


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          388 FLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       388 ~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                         |++..|++.+++.+++.++.+.
T Consensus       411 ---g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          411 ---GWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             ---CSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CcHHHHHHHHHHHHHHHHHHHH
Confidence               8899999988888877666554

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=6.2e-37  Score=290.66  Aligned_cols=385  Identities=14%  Similarity=0.073  Sum_probs=271.1

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHH
Q 014682           16 SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG------------------LSVNFWMAVLTRF   77 (420)
Q Consensus        16 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~   77 (420)
                      ...|++.+++.+|..++++++|+++||+|||++++++.+++.+++++++                  +++|+++++++|+
T Consensus        55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~  134 (491)
T 4gc0_A           55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI  134 (491)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence            3489999999999999999999999999999999999999999999998                  4789999999999


Q ss_pred             Hhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHH
Q 014682           78 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI  156 (420)
Q Consensus        78 l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  156 (420)
                      ++|++.|...+. ..+++|+.|+++|++..++.+.+..+|..+++.++..+..       ..++.... .+.||.++...
T Consensus       135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~  206 (491)
T 4gc0_A          135 IGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR-------SGDASWLN-TDGWRYMFASE  206 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TSCTTTTT-TTHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc-------cccccccc-chhhHHHhhhh
Confidence            999999998887 9999999999999999999999999999999999888876       34444333 55678877888


Q ss_pred             HHHHHHHHHHHHhcccccCCCCCCCCcccchh--Hhhhhhhhhh--------hhhhcCCCCchhhhccchhHHHHHHHHH
Q 014682          157 SLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALESASAEV--------KEEEGREATPKKSLLKNWPLMSSIIVYC  226 (420)
Q Consensus       157 ~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~--~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (420)
                      .+..++..+..+++||+|++...++++++..+  ++........        ..+++++........+.+..........
T Consensus       207 ~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (491)
T 4gc0_A          207 CIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSI  286 (491)
T ss_dssp             HHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHH
Confidence            88888888888999999987544433322221  1111110000        0011111122233344444443333333


Q ss_pred             HHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 014682          227 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYP  306 (420)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (420)
                      +...........+..+....     .+.+...........++..+++.+ +..++.||+|||+.+..+.....++.+.+.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~  360 (491)
T 4gc0_A          287 FQQFVGINVVLYYAPEVFKT-----LGASTDIALLQTIIVGVINLTFTV-LAIMTVDKFGRKPLQIIGALGMAIGMFSLG  360 (491)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHhcchHHHHh-----cCCCccchhhHHHHHHHHHHHHHH-HHHHHHHhhcCcchhccchHHHHHHHHHHH
Confidence            33222222222222222222     466666666667777788888877 777888889999999888887777766655


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCC
Q 014682          307 YIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDA  386 (420)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~  386 (420)
                      ......... +..+....+....+..+..+..+.+.+|.+|++.|+++.|+.+.++++++.+++.+.+.+.+....... 
T Consensus       361 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~-  438 (491)
T 4gc0_A          361 TAFYTQAPG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAH-  438 (491)
T ss_dssp             HHHHTTCCH-HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHH-
T ss_pred             HHHhcccch-HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence            443322222 222222333333444556678889999999999999999999999999999999988877554311100 


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 014682          387 SFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD  420 (420)
Q Consensus       387 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  420 (420)
                         .+....|++++++++++.++.++ +.||+|+
T Consensus       439 ---~~~~~~~~i~~~~~~~~~i~~~~-~~PETkg  468 (491)
T 4gc0_A          439 ---FHNGFSYWIYGCMGVLAALFMWK-FVPETKG  468 (491)
T ss_dssp             ---HTTCHHHHHHHHHHHHHHHHHHH-HCCCCTT
T ss_pred             ---hhhhHHHHHHHHHHHHHHHHHHh-eecCCCC
Confidence               04556788899999999888877 7888763

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=1.5e-36  Score=283.88  Aligned_cols=360  Identities=14%  Similarity=0.129  Sum_probs=273.0

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHH
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLSVNFWMAVLTRFL   78 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l   78 (420)
                      ++++|.++++      .|++.+++.+++.++++++|+++||+|||++++.+.++.+++.+++   +++++++.++++|++
T Consensus        53 ~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  126 (438)
T 3o7q_A           53 QQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFI  126 (438)
T ss_dssp             HHHSCCCSHH------HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            5789999999      9999999999999999999999999999999999999999999999   888999999999999


Q ss_pred             hhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhc-cccccCC----------ccccccccccC
Q 014682           79 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA-QPAEKYP----------NLFSSESLFGK  146 (420)
Q Consensus        79 ~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~-~~~~~~~----------~~~gw~~~~~~  146 (420)
                      +|++.+...+. .+++.|++|+|+|++++++.+.+.++|.+++|.+++.+. +.....+          ...+|+... .
T Consensus       127 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  205 (438)
T 3o7q_A          127 IAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSL-V  205 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHH-H
T ss_pred             HHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhh-h
Confidence            99999998887 999999999999999999999999999999999999998 4110000          000011000 1


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHh--cccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHH
Q 014682          147 FPYFLPCLCISLFAFGVTIAAFW--LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIV  224 (420)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~--l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (420)
                      .+|+..+...++..++..+..++  .||++++++++++                   +++.....++++|+|.++...+.
T Consensus       206 ~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~  266 (438)
T 3o7q_A          206 LSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK-------------------QGSFSASLSRLARIRHWRWAVLA  266 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS-------------------TTSHHHHHHHHTTCSHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc-------------------ccchhhhHHHHHhChHHHHHHHH
Confidence            11555555555555444333333  3444332111110                   11112345678899999998888


Q ss_pred             HHHHHhhhhhHHHHHHHh-hcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 014682          225 YCVFSLHDMAYSEIFSLW-ANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT  303 (420)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (420)
                      .++..........+.|.| ..+.     +|+++.+.+...+...++.+++.+ +.+++.||+++|+.+..+..+..++.+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~r~~~~~~~~~~~~~~~~~~~  340 (438)
T 3o7q_A          267 QFCYVGAQTACWSYLIRYAVEEI-----PGMTAGFAANYLTGTMVCFFIGRF-TGTWLISRFAPHKVLAAYALIAMALCL  340 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHS-----TTCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcc-----CCcchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            888887777888888888 6655     689999999999999999999887 788888999999999888887777666


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhc
Q 014682          304 SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKR  383 (420)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~  383 (420)
                      .....+..     +.  .....+.+++.....+....+..|..|++ ++++.++.. ...+++.++|.+.|.+.|..   
T Consensus       341 ~~~~~~~~-----~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~---  408 (438)
T 3o7q_A          341 ISAFAGGH-----VG--LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA---  408 (438)
T ss_dssp             HHHHCCHH-----HH--HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHcCCc-----HH--HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh---
Confidence            55443321     11  12223444556667788888888888866 889998877 77899999999999999998   


Q ss_pred             cCCCCCCC-chHHHHHHHHHHHHHHHHHhh
Q 014682          384 LDASFLPG-SQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       384 ~~~~~~~g-~~~~f~~~~~~~~~~~~~~~~  412 (420)
                             | ++..|.+.+++.++..++.+.
T Consensus       409 -------g~~~~~~~~~~~~~~~~~~~~~~  431 (438)
T 3o7q_A          409 -------GNIPTAELIPALCFAVIFIFARF  431 (438)
T ss_dssp             -------TSSGGGGHHHHHHHHHHHHHHTT
T ss_pred             -------cchHHHHHHHHHHHHHHHHHHHH
Confidence                   5 777888776666655554444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=1.2e-34  Score=265.36  Aligned_cols=334  Identities=13%  Similarity=0.130  Sum_probs=251.2

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS   81 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   81 (420)
                      .+|+|.++++      .+++.+++.++..+++++.|+++||+|||+++..+..+..++.++.+++++++.+++.|+++|+
T Consensus        27 ~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~  100 (375)
T 2gfp_A           27 ARDLNVREGA------VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGM  100 (375)
T ss_dssp             HTTSSSTTHH------HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            5789999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      +.+...+. .+++.|++|+|+|++++++.+...++|..++|.+++.+.+       ..|||         ..+.+.++..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~~~---------~~~~~~~~~~  164 (375)
T 2gfp_A          101 GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------MWNWR---------ACYLFLLVLC  164 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-------HHHHH---------HHHHHHHHHH
T ss_pred             HHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------hccHH---------HHHHHHHHHH
Confidence            99988887 9999999999999999999999999999999999999987       44554         4445555555


Q ss_pred             HHHHH-HHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014682          161 FGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  239 (420)
Q Consensus       161 ~~~~~-~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (420)
                      ++..+ ..+.+||++++++++                      ++..+..++.+|+|+++...+..++..........+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (375)
T 2gfp_A          165 AGVTFSMARWMPETRPVDAPR----------------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACS  222 (375)
T ss_dssp             HHHHCCCCCSSCCCSTTTCCC----------------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCcccCCCCccc----------------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            55433 455677765442211                      1122345678889998888777777666555555555


Q ss_pred             HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHH
Q 014682          240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL-TIPLLTSYPYIAMLSGFGLAF  318 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  318 (420)
                      |.|..+.     +|+++.+.+...+...++.+++.. ..+++.||.+++  ...+... ...+......... .. ....
T Consensus       223 ~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~-~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~-~~-~~~~  292 (375)
T 2gfp_A          223 GVLMGAV-----LGLSSMTVSILFILPIPAAFFGAW-FAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF-GV-MNVW  292 (375)
T ss_dssp             SCSSHHH-----HHHHHHHHHHHHHTHHHHHHHHHH-HHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH-HH-HHHH
T ss_pred             HHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh-cc-ccHH
Confidence            5444332     688999999999999988888877 667777776652  2222222 2222211111110 01 1122


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHH
Q 014682          319 LLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFV  398 (420)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~  398 (420)
                      .......+.+++.....+....+..|..| ++|+++.|+.+...++|..++|.+.|.+.+..          ++...+.+
T Consensus       293 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------~~~~~~~~  361 (375)
T 2gfp_A          293 TLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG----------QGSLGLLM  361 (375)
T ss_dssp             HHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH----------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC----------cccHHHHH
Confidence            23333444445556667888888889887 89999999999999999999999999998876          66666665


Q ss_pred             HH
Q 014682          399 LN  400 (420)
Q Consensus       399 ~~  400 (420)
                      .+
T Consensus       362 ~~  363 (375)
T 2gfp_A          362 TL  363 (375)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=9.9e-33  Score=261.74  Aligned_cols=371  Identities=12%  Similarity=0.074  Sum_probs=244.6

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG   80 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G   80 (420)
                      ++|+|.+..+      .+++.+++.++..+++++.|+++|| +|||+++..+.++..++.+++++++|++.++++|+++|
T Consensus        46 ~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  119 (491)
T 4aps_A           46 TGDLHITRAT------AASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILII  119 (491)
T ss_dssp             HTSCCSCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHH
T ss_pred             hhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3569999999      9999999999999999999999999 89999999999999999999999999999999999999


Q ss_pred             hhccchhhh-Hhhhhhhchhhh--hhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHH
Q 014682           81 SLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS  157 (420)
Q Consensus        81 ~~~g~~~~~-~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  157 (420)
                      ++.+...+. .+++.|++|+++  |++++++.+.+.++|..++|.+++.+.+       ..|||+.|         .+.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~g~~~~f---------~~~~  183 (491)
T 4aps_A          120 IGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE-------AAGYHVAF---------SLAA  183 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HSCHHHHH---------HHHH
T ss_pred             HHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHH---------HHHH
Confidence            999988887 999999999988  7778888999999999999999999998       45555444         5555


Q ss_pred             HHHHHHHHHHH-hcccccCCCCCCCCcccchhHhhhhhhhh----------------------hh---------------
Q 014682          158 LFAFGVTIAAF-WLPETLHRHNDDDDSCDVSYDALESASAE----------------------VK---------------  199 (420)
Q Consensus       158 ~~~~~~~~~~~-~l~e~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~---------------  199 (420)
                      +..++..+..+ ..|+..+++.++++++... ++.++..+.                      .+               
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (491)
T 4aps_A          184 IGMFIGLLVYYFGGKKTLDPHYLRPTDPLAP-EEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPV  262 (491)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCCSCCSCCCSH-HHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccccccccCCCCcccc-chhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHH
Confidence            44444333322 2233222211111111111 000000000                      00               


Q ss_pred             ----hhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHH
Q 014682          200 ----EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQL  275 (420)
Q Consensus       200 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  275 (420)
                          ...++......+..+....+...+...+...........++.|..+.     .+.+..+.+.......+..+++..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  337 (491)
T 4aps_A          263 FYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER-----VDSSWFPVSWFQSLNPLFIMLYTP  337 (491)
T ss_dssp             HHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS-----CCCSSSCSGGGTTHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH-----hccCccCHHHHhccchHHHHHHHH
Confidence                00000111111111222233334344444444455555666676554     444545566667777777777776


Q ss_pred             HHHHHHHHhhchHHHHH-----HHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Q 014682          276 SLYPFLERILGPIMVAR-----IAGVLTIPLLTSYPYIAML---SGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD  347 (420)
Q Consensus       276 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (420)
                       +.+++.||.+||+...     .+..+..++...+......   ..............+.+++.....+....+..|..|
T Consensus       338 -~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p  416 (491)
T 4aps_A          338 -FFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAP  416 (491)
T ss_dssp             -HHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTT
T ss_pred             -HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence             5666788888765443     5555555555444433211   000112223334444455555667788889999999


Q ss_pred             cchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          348 QDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       348 ~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      +++|+++.|+.+...++|..++|.+.+.+.+.           ++...|.+.+.+.+++.++.+.
T Consensus       417 ~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~  470 (491)
T 4aps_A          417 KAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------SEVAYFSYFGLGSVVLGIVLVF  470 (491)
T ss_dssp             TTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------STTHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------cHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998887653           4666778777777776665544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.97  E-value=4.6e-31  Score=244.59  Aligned_cols=361  Identities=11%  Similarity=0.087  Sum_probs=233.8

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHH---HHhhhhhHH-HHHHHHH
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT---LFGLSVNFW-MAVLTRF   77 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~---~~~~~~~~~-~l~~~r~   77 (420)
                      ++++|.|+.+      .|++.+.+.+++.++++++|+++||+|||++++.+..+.+++..   ...+++... .+...+.
T Consensus        35 ~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (417)
T 2cfq_A           35 HDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSI  108 (417)
T ss_dssp             HTTTCCCTTT------SHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHH
T ss_pred             HHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999      99999999999999999999999999999999988887755322   123333221 2445667


Q ss_pred             Hhhhhccchhhh-Hhhhhhhchh--hhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHH
Q 014682           78 LLGSLNGLLGPI-KAYACEIFRE--EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL  154 (420)
Q Consensus        78 l~G~~~g~~~~~-~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~  154 (420)
                      +.|++.+...+. ...+.++.++  ++|++..+......++|..++|.+++++.+        .+||..         +.
T Consensus       109 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~--------~~~~~~---------f~  171 (417)
T 2cfq_A          109 VGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT--------INNQFV---------FW  171 (417)
T ss_dssp             GGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH--------HCSHHH---------HT
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH--------hchhHH---------HH
Confidence            777666655443 4445555543  456777788888899999999999999875        234433         34


Q ss_pred             HHHHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhh
Q 014682          155 CISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMA  234 (420)
Q Consensus       155 ~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (420)
                      +.++..++..+..+..||++++..+++++++ .            ++++......++++|+|+++...+..+........
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (417)
T 2cfq_A          172 LGSGCALILAVLLFFAKTDAPSSATVANAVG-A------------NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDV  238 (417)
T ss_dssp             TTTTTTTTHHHHSCSSCCCCSCSSCSSSSSS-S------------CCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcccccccccccccc-c------------ccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHH
Confidence            4444333333333444433321111000000 0            00011112345678899887766655544444444


Q ss_pred             HHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014682          235 YSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF  314 (420)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (420)
                      +.+++|.|+.+..  ...+.+....+...+...+..+++.+ ..+++.||+++|+.+..+..+..+..+......   + 
T Consensus       239 ~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~---~-  311 (417)
T 2cfq_A          239 FDQQFANFFTSFF--ATGEQGTRVFGYVTTMGELLNASIMF-FAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT---S-  311 (417)
T ss_dssp             HHHHHHHHHHHTS--SSHHHHTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC---S-
T ss_pred             HHHHHHHHHHHHH--hccCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc---c-
Confidence            5556777764331  11123455667777777778888766 778888999999988877776666554443321   1 


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHH-HHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCch
Q 014682          315 GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIA-MTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQ  393 (420)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~  393 (420)
                       .+ .+.+...+.+.......+....+.+|..|++.||++.+.. +....+|+.++|.+.|.+.|..          |+.
T Consensus       312 -~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~----------g~~  379 (417)
T 2cfq_A          312 -AL-EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI----------GFQ  379 (417)
T ss_dssp             -HH-HHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS----------HHH
T ss_pred             -HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc----------CcH
Confidence             11 1222222223333445556678999999999999999994 8888999999999999999976          788


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcc
Q 014682          394 MVFFVLNVVEAIGVLMTFKPFLAQR  418 (420)
Q Consensus       394 ~~f~~~~~~~~~~~~~~~~~~~~~~  418 (420)
                      ..|.+.+++.+++.++.+. ..||+
T Consensus       380 ~~f~~~~~~~l~~~~~~~~-~~~~~  403 (417)
T 2cfq_A          380 GAYLVLGLVALGFTLISVF-TLSGP  403 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-SSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHh-hhcCC
Confidence            8899988888888776655 44443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.95  E-value=3.9e-28  Score=232.07  Aligned_cols=378  Identities=12%  Similarity=0.071  Sum_probs=215.7

Q ss_pred             ccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhc-CCchhHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhhhcc
Q 014682            7 IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNG   84 (420)
Q Consensus         7 ~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g   84 (420)
                      .+..+      .+++.+++.++..+++++.|+++||+ |||+++..+.++..++.++.++++ +++.+++.|++.|++.+
T Consensus        51 ~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  124 (524)
T 2xut_A           51 LRGAV------AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSG  124 (524)
T ss_dssp             TTTTT------HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             cCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            89999      99999999999999999999999999 999999999999999999999999 99999999999999999


Q ss_pred             chhhh-HhhhhhhchhhhhhhHHHH---HHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014682           85 LLGPI-KAYACEIFREEHQALGLST---VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  160 (420)
Q Consensus        85 ~~~~~-~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  160 (420)
                      ...|. .+++.|++|+++|+++.+.   ...+.++|.+++|.+++.+.+       ..|||         ..+.+.++..
T Consensus       125 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~~g~~---------~~f~~~~~~~  188 (524)
T 2xut_A          125 GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK-------NFGAA---------VAFGIPGVLM  188 (524)
T ss_dssp             TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH-------TSCHH---------HHHHHHHHHH
T ss_pred             ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cccHH---------HHHHHHHHHH
Confidence            88887 9999999999999876666   899999999999999999987       44554         4445555555


Q ss_pred             HHHHHHHHhc-ccccCCCCCCCCcccc---hhHhhhhhh---hh-----------------------------------h
Q 014682          161 FGVTIAAFWL-PETLHRHNDDDDSCDV---SYDALESAS---AE-----------------------------------V  198 (420)
Q Consensus       161 ~~~~~~~~~l-~e~~~~~~~~~~~~~~---~~~~~~~~~---~~-----------------------------------~  198 (420)
                      ++..+..+.. |+.++.++++++..+.   ..+..++..   ++                                   .
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (524)
T 2xut_A          189 FVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLV  268 (524)
T ss_dssp             HHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhh
Confidence            4443333332 2211111110000000   000000000   00                                   0


Q ss_pred             hhhhcC----------CCCchhhhccchhHHHHHHHH---HHHHhhhhhHHHHHHHhhcCcccCCccCCch-hhHHHHHH
Q 014682          199 KEEEGR----------EATPKKSLLKNWPLMSSIIVY---CVFSLHDMAYSEIFSLWANSPKKLGGLNYST-QMVGEVLA  264 (420)
Q Consensus       199 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~  264 (420)
                      .|++++          +.....+..+.++.+......   .+...........++.+...      .+.+. ...+....
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  342 (524)
T 2xut_A          269 MGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND------MVKPQWFEPAMMQA  342 (524)
T ss_dssp             HHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH------SCCCSSSCHHHHHT
T ss_pred             hcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh------cCCCeeecHHHHHH
Confidence            000000          000000111112222111111   11111111112223332211      11111 12344444


Q ss_pred             HHHHHHHHHHHHHH----HHHHHh---hchHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhhHHH
Q 014682          265 ITGFSLLVFQLSLY----PFLERI---LGPIMVARIAGVLTIPLLTSYPYIAMLS---GFGLAFLLNCASVVKNLLSVSI  334 (420)
Q Consensus       265 ~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  334 (420)
                      ...+..++...+..    ++++|+   .++++.+..+..+..++.+.+.......   .......+....++.+++....
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  422 (524)
T 2xut_A          343 LNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLV  422 (524)
T ss_dssp             TSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence            43344444433222    222333   1223445555555555554443321000   0011122333445556666777


Q ss_pred             HHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCc-hHHHHHHHHHHHHHHHHHhh
Q 014682          335 ITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGS-QMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       335 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~-~~~f~~~~~~~~~~~~~~~~  412 (420)
                      .+....+..|..|+++||+++|+.+...++|+.++|.+.|.+.+..+.........+. ...|++.+++.+++.++.+.
T Consensus       423 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (524)
T 2xut_A          423 SATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFAL  501 (524)
T ss_dssp             HHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence            8888899999999999999999999999999999999999988743110000000011 23367777777766655543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.51  E-value=1.5e-12  Score=121.42  Aligned_cols=175  Identities=8%  Similarity=0.022  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 014682          218 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  297 (420)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (420)
                      +....+..+.............|.+..      ++ .+..+.+.+.+...++..++++ ..+++.||+|||+.+..+.++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~g~r~~l~~~~~~  101 (451)
T 1pw4_A           30 FLGIFFGYAAYYLVRKNFALAMPYLVE------QG-FSRGDLGFALSGISIAYGFSKF-IMGSVSDRSNPRVFLPAGLIL  101 (451)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHTTS------ST-TCSSCHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH------Hh-ccHhHHHHHHHHHHHHHHHHHH-hHHHHHHhcCchHHHHHHHHH
Confidence            333444444444444444445554432      26 7888999999999999999988 778888999999999999998


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHH
Q 014682          298 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF  377 (420)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  377 (420)
                      ..++.++..+....  ......+.+..++.+++.....+...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+.
T Consensus       102 ~~~~~~~~~~~~~~--~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  179 (451)
T 1pw4_A          102 AAAVMLFMGFVPWA--TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  179 (451)
T ss_dssp             HHHHHHHHHHCHHH--HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhc--cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88887777662211  0112234444556666777788899999999999999999999999999999999999999998


Q ss_pred             HhhhhccCCCCCCC-chHHHHHHHHHHHHHHHHHhh
Q 014682          378 SWAQKRLDASFLPG-SQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       378 ~~~~~~~~~~~~~g-~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      +..          + |+..|++.+++.++..++.+.
T Consensus       180 ~~~----------g~w~~~f~~~~~~~~~~~~~~~~  205 (451)
T 1pw4_A          180 AWF----------NDWHAALYMPAFCAILVALFAFA  205 (451)
T ss_dssp             HHT----------CCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHh----------ccHHHHHHHHHHHHHHHHHHHHh
Confidence            877          7 999999988887776665544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.47  E-value=4.4e-12  Score=119.73  Aligned_cols=180  Identities=16%  Similarity=0.085  Sum_probs=140.9

Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHH
Q 014682          216 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPIMVARIA  294 (420)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  294 (420)
                      +.++......++............+.|..+....+++|.+..+.+.+.+...++..++++ ..+++.|| +|||+.+..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~~g~r~~~~~~   91 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT-IGGFVADRIIGARPAVFWG   91 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTSCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchHHHHHH
Confidence            345566666666666666666777777765433445799999999999999999999988 78888899 8999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcch--hhHHhhHHHHHHHHHHHHhhhh
Q 014682          295 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQ--RGAANGIAMTGMSLFKAAGPAG  372 (420)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~~g~~~  372 (420)
                      ..+..++.+.....++      ...+.+..++.+++.....+...++++|.+|+++  |+++.+..+...++|..++|.+
T Consensus        92 ~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  165 (491)
T 4aps_A           92 GVLIMLGHIVLALPFG------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI  165 (491)
T ss_dssp             HHHHHHHHHHHHSCCS------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence            9888887776655322      1123344455566777788999999999999988  7888888999999999999999


Q ss_pred             hhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 014682          373 GGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       373 ~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~  412 (420)
                      .+.+.+..          +|+..|++.++..+++.+....
T Consensus       166 ~~~l~~~~----------g~~~~f~~~~~~~~~~~~~~~~  195 (491)
T 4aps_A          166 VGAAQEAA----------GYHVAFSLAAIGMFIGLLVYYF  195 (491)
T ss_dssp             HHHHHHHS----------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhh----------hHHHHHHHHHHHHHHHHHHHHH
Confidence            99999987          8999999988777776665543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.46  E-value=6.1e-12  Score=116.92  Aligned_cols=157  Identities=11%  Similarity=-0.041  Sum_probs=118.9

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  331 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (420)
                      +|.+..+.+.+.+...++..++++ ..+++.||+|||+.+..+..+..++.++.......+   ....+.+..++.+++.
T Consensus        56 ~g~s~~~~g~~~~~~~~~~~i~~~-~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~l~G~~~  131 (438)
T 3o7q_A           56 FTLTNFQAGLIQSAFYFGYFIIPI-PAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM---NYTLFLVGLFIIAAGL  131 (438)
T ss_dssp             SCCCSHHHHHHHHHHHHHHHTTHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccc---cHHHHHHHHHHHHhhH
Confidence            799999999999999999999988 778888999999999999988888877763322211   1223445556667777


Q ss_pred             HHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHH-HhhhhccC---------------CCCCCCchHH
Q 014682          332 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF-SWAQKRLD---------------ASFLPGSQMV  395 (420)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~-~~~~~~~~---------------~~~~~g~~~~  395 (420)
                      ....+...++++|.+|+++|+++.++.+....+|..++|.+.+.+. +.......               .....+|+..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  211 (438)
T 3o7q_A          132 GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTP  211 (438)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHH
Confidence            8888899999999999999999999999999999999999999998 43310000               0000017888


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 014682          396 FFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       396 f~~~~~~~~~~~~~~~~  412 (420)
                      |++.+.+.++..++.+.
T Consensus       212 ~~~~~~~~~~~~~~~~~  228 (438)
T 3o7q_A          212 YMIIVAIVLLVALLIML  228 (438)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88777776666555444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.37  E-value=2e-12  Score=119.37  Aligned_cols=112  Identities=16%  Similarity=0.071  Sum_probs=98.7

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhh-Hhhhhhh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI   96 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~   96 (420)
                      .++..++..++..++.++.|+++||+|||+++..+..+.+++.+..++.++.+.+++..++.+++.+...+. ..++.|.
T Consensus       261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  340 (417)
T 2cfq_A          261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ  340 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678888888889999999999999999999999998888888888888888888888888888876666565 8899999


Q ss_pred             chhhhhhhHHHH-HHHHhHHHHHHHHHHHhHhcc
Q 014682           97 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQ  129 (420)
Q Consensus        97 ~~~~~r~~~~~~-~~~~~~~g~~~g~~l~~~l~~  129 (420)
                      +|++.|+++.+. .+....+|..++|.+++.+.+
T Consensus       341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~  374 (417)
T 2cfq_A          341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE  374 (417)
T ss_dssp             SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH
Confidence            999999999998 488889999999999999987

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.36  E-value=2.5e-11  Score=115.64  Aligned_cols=175  Identities=10%  Similarity=0.009  Sum_probs=134.3

Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccC------CchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chH
Q 014682          216 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN------YSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPI  288 (420)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  288 (420)
                      |.++...+..++............+.|+.+.     +|      +++.+.+.+.+...++..++.+ ..+++.||+ |||
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~~g~r   85 (524)
T 2xut_A           12 RQIPYIIASEACERFSFYGMRNILTPFLMTA-----LLLSIPEELRGAVAKDVFHSFVIGVYFFPL-LGGWIADRFFGKY   85 (524)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CSSCCSSSTTTTTHHHHHHHHHHHHHHTHH-HHHHHHTTSSCSH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccccccccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcch
Confidence            4455555666666666666666777777654     56      9999999999999999999887 788899999 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhH---HHHHHHHH
Q 014682          289 MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI---AMTGMSLF  365 (420)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~~g  365 (420)
                      +.+..+.++..++.+......     .....+.+..++.+++.....+...++..|.+|+++|+++.+.   .+...++|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g  160 (524)
T 2xut_A           86 NTILWLSLIYCVGHAFLAIFE-----HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFG  160 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTS-----SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHH
Confidence            999988888777776665532     0122233444555666677788999999999999999877666   88899999


Q ss_pred             HHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014682          366 KAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       366 ~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~  411 (420)
                      ..++|.+.+.+.+..          +|+..|.+.+++.+++.+...
T Consensus       161 ~~~g~~~~~~l~~~~----------g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          161 SFFASLSMPLLLKNF----------GAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHTSTHHHHTS----------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccc----------cHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999876          899999998888777665544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.34  E-value=9.7e-12  Score=113.07  Aligned_cols=169  Identities=17%  Similarity=0.071  Sum_probs=130.9

Q ss_pred             HHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 014682          225 YCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTS  304 (420)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (420)
                      .++.......+....|.+..      ++|.++.+.+...+...+...++++ ..+++.||+|||+.+..+..+..++.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~------~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~   81 (375)
T 2gfp_A            9 VAVGQMAQTIYIPAIADMAR------DLNVREGAVQSVMGAYLLTYGVSQL-FYGPISDRVGRRPVILVGMSIFMLATLV   81 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT------TSSSTTHHHHHHHHHHHHHHHHHHT-THHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHH------HcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence            33333444444444554433      2799999999999999999999987 7788899999999999988888887777


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhcc
Q 014682          305 YPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRL  384 (420)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~  384 (420)
                      ....++      ...+....++.+.+.....+....+..|..|+++|+++.+..+....+|..++|.+.+.+.+..    
T Consensus        82 ~~~~~~------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----  151 (375)
T 2gfp_A           82 AVTTSS------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW----  151 (375)
T ss_dssp             HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH----
T ss_pred             HHHhcc------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc----
Confidence            665432      2234445556667777788899999999999999999999999999999999999999998877    


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhc
Q 014682          385 DASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ  417 (420)
Q Consensus       385 ~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  417 (420)
                            +|+..|.+.+.+.++..+.... ..||
T Consensus       152 ------~~~~~~~~~~~~~~~~~~~~~~-~~~~  177 (375)
T 2gfp_A          152 ------NWRACYLFLLVLCAGVTFSMAR-WMPE  177 (375)
T ss_dssp             ------HHHHHHHHHHHHHHHHHCCCCC-SSCC
T ss_pred             ------cHHHHHHHHHHHHHHHHHHHHH-HCcc
Confidence                  7999999888887777664444 3444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.10  E-value=8.7e-10  Score=103.97  Aligned_cols=148  Identities=15%  Similarity=0.091  Sum_probs=98.7

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhh-----hhHHHHHHH-HHHhhhhccchhhh-H
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----VNFWMAVLT-RFLLGSLNGLLGPI-K   90 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~-r~l~G~~~g~~~~~-~   90 (420)
                      .........+...++.++.+.+.||+|||+.++.+.....++.+..+..     ++...+... -+..+.+.+ ..|. .
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  392 (491)
T 4gc0_A          314 ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS-WGPVCW  392 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT-TTHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH-HHHHHH
Confidence            4556666778888999999999999999999999888888777665543     122222222 222223333 3455 8


Q ss_pred             hhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHH-HHHHHHh
Q 014682           91 AYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFW  169 (420)
Q Consensus        91 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  169 (420)
                      .+.+|.+|.+.|++++++......++..+++.+...+.+..       ....   ...+...+++.+..+++ .++.+++
T Consensus       393 ~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~~~---~~~~~~~~~i~~~~~~~~~i~~~~~  462 (491)
T 4gc0_A          393 VLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WLVA---HFHNGFSYWIYGCMGVLAALFMWKF  462 (491)
T ss_dssp             HHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HHHH---HHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHh---hhhhhHHHHHHHHHHHHHHHHHHhe
Confidence            89999999999999999999999999999988877665411       0000   01122233444444444 4456788


Q ss_pred             cccccCC
Q 014682          170 LPETLHR  176 (420)
Q Consensus       170 l~e~~~~  176 (420)
                      +||++.+
T Consensus       463 ~PETkg~  469 (491)
T 4gc0_A          463 VPETKGK  469 (491)
T ss_dssp             CCCCTTC
T ss_pred             ecCCCCC
Confidence            9998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	420
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	4e-12
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	3e-06

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 65.5 bits (158), Expect = 4e-12
 Identities = 49/400 (12%), Positives = 99/400 (24%), Gaps = 38/400 (9%)

Query: 18  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 77
            G+  S        +    G V+DR   +  +  G           G       ++   F
Sbjct: 61  LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120

Query: 78  LLGSLNGLLGPIKAYAC-----EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 132
           +L  L G    +    C       + ++ +   +S  + A  +G  I P L         
Sbjct: 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL------ 174

Query: 133 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALE 192
                     +     +       +  A  V + AF +     +        +   D  +
Sbjct: 175 ---------GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD 225

Query: 193 SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGL 252
             + + ++E   +    + +L N  L    I      L      +    +    K     
Sbjct: 226 DYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD 285

Query: 253 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS 312
             S        A    +LL   +S   F        +       +   +    P      
Sbjct: 286 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 345

Query: 313 GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKA-AGPA 371
                 ++              +  + +       +   G A G       L  + A  A
Sbjct: 346 DMICMIVIGFL-------IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398

Query: 372 GGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 411
             G    +           G    F V+     + V++  
Sbjct: 399 IVGYTVDFF----------GWDGGFMVMIGGSILAVILLI 428

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 44/398 (11%), Positives = 94/398 (23%), Gaps = 43/398 (10%)

Query: 15  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 74
            S  G + ++      L    +GL++D+ G +  ++     +++    F + +   +   
Sbjct: 42  KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101

Query: 75  TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 134
              +   + G+       A     E          +  +G   + G       A      
Sbjct: 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGA------ 155

Query: 135 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESA 194
                   +F     F+  L          +  F   +        +           + 
Sbjct: 156 ---SIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV--------GAN 204

Query: 195 SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY 254
            +    +   E   +  L      +  +           A                    
Sbjct: 205 HSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYV 264

Query: 255 STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF 314
           +T       +I  F+ L+           + G IM  RI G            +  L  F
Sbjct: 265 TTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMF 324

Query: 315 GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMT-GMSLFKAAGPAGG 373
            + F               ++ G F       +         +       L         
Sbjct: 325 EVPF---------------LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369

Query: 374 GALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 411
           G ++             G Q  + VL +V     L++ 
Sbjct: 370 GNMYESI----------GFQGAYLVLGLVALGFTLISV 397

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	420
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.97
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.42
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.4

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.8e-37  Score=284.51  Aligned_cols=371  Identities=12%  Similarity=0.027  Sum_probs=268.2

Q ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHH
Q 014682            3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV----NFWMAVLTRFL   78 (420)
Q Consensus         3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l   78 (420)
                      +|+|+|++|      .|++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++++    +++.+++.|++
T Consensus        52 ~~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (447)
T d1pw4a_          52 VEQGFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL  125 (447)
T ss_dssp             TSSTTCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHH
T ss_pred             HHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHH
Confidence            468999999      99999999999999999999999999999999999999999999988764    67889999999


Q ss_pred             hhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHH
Q 014682           79 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS  157 (420)
Q Consensus        79 ~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  157 (420)
                      .|++.|...+. .+++.|++|+|+|++++++.+.+.++|..++|.+++.+.+.      ..+||+.+         .+.+
T Consensus       126 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~------~~~w~~~~---------~~~~  190 (447)
T d1pw4a_         126 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW------FNDWHAAL---------YMPA  190 (447)
T ss_dssp             HHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH------TCCSTTCT---------HHHH
T ss_pred             HHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh------hhcccccc---------hhhh
Confidence            99999988887 99999999999999999999999999999999999887762      23555554         4444


Q ss_pred             HHHHH-HHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHH
Q 014682          158 LFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYS  236 (420)
Q Consensus       158 ~~~~~-~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (420)
                      +..++ .++..+..+|+|++.+...+++.+. +..++..++.+++....+...++.+++|.++......++.........
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (447)
T d1pw4a_         191 FCAILVALFAFAMMRDTPQSCGLPPIEEYKN-DYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGIL  269 (447)
T ss_dssp             HHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-C-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcccchhhcccchhhhhhh-hcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcch
Confidence            44444 3445566666665543332222111 111111111112222233345678889999888888888877777888


Q ss_pred             HHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 014682          237 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGL  316 (420)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (420)
                      .+.+.|+.+.     .+++..+.+.......+..+++.+ +.+++.||.++++........................ ..
T Consensus       270 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  342 (447)
T d1pw4a_         270 DWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA-GN  342 (447)
T ss_dssp             HHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCT-TC
T ss_pred             hhhhhhcccc-----cccccchhhhhhhcchhhhhhhhh-hhhhhhhhccccccccccchhHHHHHHHHHHHHhccc-cc
Confidence            8888888766     789999999999999999999987 7778888877654333333222222222111111111 11


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHH-HHHhhhhhhHHHHhhhhccCCCCCCCchHH
Q 014682          317 AFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF-KAAGPAGGGALFSWAQKRLDASFLPGSQMV  395 (420)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g-~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~  395 (420)
                      .....+..+..++......+.......|.+|++.||++.|+.+.+.+++ ..++|.+.|.+.|..          |++..
T Consensus       343 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~----------g~~~~  412 (447)
T d1pw4a_         343 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF----------GWDGG  412 (447)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------CSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------ChHHH
Confidence            2223333344455556677788889999999999999999999988874 567899999999988          88888


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 014682          396 FFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       396 f~~~~~~~~~~~~~~~~  412 (420)
                      |.+.+++.+++.++...
T Consensus       413 ~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         413 FMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88887777776655543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.3e-29  Score=228.44  Aligned_cols=356  Identities=11%  Similarity=0.076  Sum_probs=239.4

Q ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHH----HHHH
Q 014682            2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV----LTRF   77 (420)
Q Consensus         2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~----~~r~   77 (420)
                      ++++|.|++|      .|++.+++.+++.++++++|+++||+|||++++.+..+..++..+..+.++.....    +.+.
T Consensus        35 ~~~~g~s~~~------~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (417)
T d1pv7a_          35 HDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSI  108 (417)
T ss_dssp             HHHHCCCHHH------HHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHH
T ss_pred             HHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            4678999999      99999999999999999999999999999999999999999998888877665543    4444


Q ss_pred             Hhhhhccchhhh-Hhhhhhhchh--hhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHH
Q 014682           78 LLGSLNGLLGPI-KAYACEIFRE--EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL  154 (420)
Q Consensus        78 l~G~~~g~~~~~-~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~  154 (420)
                      +.+.+.+..... .....+..++  +++.+..+........+..++|.+++.+.+        .+|        ++....
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~--------~~~~~~  172 (417)
T d1pv7a_         109 VGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT--------INN--------QFVFWL  172 (417)
T ss_dssp             HTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH--------HCH--------HHHHHH
T ss_pred             HhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc--------ccc--------cccccc
Confidence            444444443332 3333333332  345567778888889999999999999886        122        122223


Q ss_pred             HHHHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhh
Q 014682          155 CISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMA  234 (420)
Q Consensus       155 ~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (420)
                      ......+...+..+..+|++++.++++++++..              ++.......+..+++..+...............
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (417)
T d1pv7a_         173 GSGCALILAVLLFFAKTDAPSSATVANAVGANH--------------SAFSLKLALELFRQPKLWFLSLYVIGVSCTYDV  238 (417)
T ss_dssp             HHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCC--------------CCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhcccccchhhhhhhhhhc--------------ccccccccccccccccccchhhhhHHHHHHHHh
Confidence            333333444455566666655443322111110              111112223334444444444333333333333


Q ss_pred             HHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014682          235 YSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF  314 (420)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (420)
                      .......+....  ....+.+....+.......++..++.. ..+++.||.++++.+..+..+..+..+.+...++    
T Consensus       239 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----  311 (417)
T d1pv7a_         239 FDQQFANFFTSF--FATGEQGTRVFGYVTTMGELLNASIMF-FAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS----  311 (417)
T ss_dssp             HHHHHHHHHTTS--SSCHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCC----
T ss_pred             hhcccccccccc--ccccccchhhhcccccccccccccchh-hhhhhhcccccccchhhhHHHHHHhhhccccccc----
Confidence            333333333222  222456667777778887788888776 7778888889999998888887777666655332    


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHH-HHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCch
Q 014682          315 GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAM-TGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQ  393 (420)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~  393 (420)
                        .....+...+.++......+....+.+|.+|++.|+++.|+.. ....+|..++|.+.|.+.|..          |++
T Consensus       312 --~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~----------g~~  379 (417)
T d1pv7a_         312 --ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI----------GFQ  379 (417)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH----------CHH
T ss_pred             --cchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------CHH
Confidence              1223344445556667788889999999999999999999865 556799999999999999998          899


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 014682          394 MVFFVLNVVEAIGVLMTFK  412 (420)
Q Consensus       394 ~~f~~~~~~~~~~~~~~~~  412 (420)
                      ..|++.+++.++..++..+
T Consensus       380 ~~~~~~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         380 GAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999888887776655

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=6.3e-12  Score=114.74  Aligned_cols=149  Identities=8%  Similarity=0.003  Sum_probs=120.0

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 014682          252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  331 (420)
Q Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (420)
                      .|++..+.|++.+...++..++++ ..+++.||+|||+.+..+.++..++.++.........  ....+++..++.+++.
T Consensus        54 ~g~s~~~~g~~~s~~~~~~~~~~~-~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~  130 (447)
T d1pw4a_          54 QGFSRGDLGFALSGISIAYGFSKF-IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS--SIAVMFVLLFLCGWFQ  130 (447)
T ss_dssp             STTCSSCHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS--SSSHHHHHHHHHHHHH
T ss_pred             hCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhh--hHHHHHHHHHHHHHhh
Confidence            699999999999999999999988 7888899999999999999888887777665443221  1223444455556666


Q ss_pred             HHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014682          332 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  411 (420)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~  411 (420)
                      ....+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+...         +|+..|++.+.+.++..++.+
T Consensus       131 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~---------~w~~~~~~~~~~~~~~~~~~~  201 (447)
T d1pw4a_         131 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN---------DWHAALYMPAFCAILVALFAF  201 (447)
T ss_dssp             HHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC---------CSTTCTHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh---------cccccchhhhhhHHHHHHHHH
Confidence            77788889999999999999999999999999999999999998887763         688888888777776666555


Q ss_pred             h
Q 014682          412 K  412 (420)
Q Consensus       412 ~  412 (420)
                      .
T Consensus       202 ~  202 (447)
T d1pw4a_         202 A  202 (447)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=2.9e-13  Score=122.07  Aligned_cols=140  Identities=19%  Similarity=0.142  Sum_probs=118.4

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhh-Hhhhhhh
Q 014682           18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI   96 (420)
Q Consensus        18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~   96 (420)
                      .+...+...++..++..+.+++.||+|||+.+..+..+.+++.+...+.++.+.+++..++.|++.+...+. .+++.|.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  340 (417)
T d1pv7a_         261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ  340 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888899999999999999999999999999999999999999999999999999999999998888887 9999999


Q ss_pred             chhhhhhhHHHHH-HHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHH-HHHHhcccc
Q 014682           97 FREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPET  173 (420)
Q Consensus        97 ~~~~~r~~~~~~~-~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~e~  173 (420)
                      +|+|+|+++.++. +....+|..++|.++|++.+       ..|++.         .+.+.++..++.. +..+.++++
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~-------~~g~~~---------~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE-------SIGFQG---------AYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             SCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-------HHCHHH---------HHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCHHH---------HHHHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999985 56778999999999999998       455443         3455555555543 444555443