Citrus Sinensis ID: 014691

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
Protein Sequence
MESPNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL
Secondary Structure (PSIPRED)
cccccEEEEEccEEEcccccccccEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHHHcccEEEEEEccccccccccccHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHccccccEEEEccccccHHHHHHcccccccccccccccccccccccccHHHHHHHHccccccccccEEEEEccccccccHHHHHHHHHHHcccccEEEEcccccHHHHHHHcccccccEEEEccccHHHHHHccccccHHHHHcccccEEEEEccccEEEEEccHHHHHHHHHHHHHcccccccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccEEEEEcccccHHHHcccccEEEEEEEcccHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHcccccEEEEEEcccccccccccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHcccccEEEEEccccccHHHHHcccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHccccccEEEEccccccHHHHHccEEcHHHHHHccccEEEEccccccEEccccHHHHHHHHHHHHccccccccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEEccHHHHHcc
Coil and Loop (DISEMBL)
mespnllvasgsklvsggmrknptlicvpimgeSVDKMVVDMGKANASGADLVEIRLdglknfnpreniktlikespvptlftyrpiweggqydgdeneRVDVLRLAMELGADYIDVELQVAREFNdsirgkkpekcKVIVSshnyqytpsveDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAkfggfltfgtlengivsapgqptiKDLLDLYnfrqmgpdtkvfgiigkpvghskspilyneafksvgfNGVFVHLLVDDIAKFFQtyssndfagfsctiphkeaavkccDEVDTVAKSIGAVNciirrqsdgklfgyntdyvGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL
Flexible Loop (DISEMBL)
mespnllvasgsklvsggmrknpTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGlknfnpreniktlikespvptlFTYRpiweggqydgdeNERVDVLRLAMELGADYIDVELQVAREfndsirgkkpekCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKsigavnciirrqsdgklfgYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALaygakakgarvVIANRTYENLQRL
Low Complexity Region (SEG)
MESPNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIgaggagkalaygakakgaRVVIANRTYENLQRL
Disordered region (IsUnstruct)
*********************NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY******
Disordered Region (DISOPRED)
**********************PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENG*VSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN****
Disordered Region (DISEMBL)
MESPNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL
Disordered Region (DISPRO)
***PNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRG*********SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESPNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	420	2.2.26 [Sep-21-2011]
Q9SQT8	603	Bifunctional 3-dehydroqui	yes	no	1.0	0.696	0.734	1e-169
Q74ZZ1	1577	Pentafunctional AROM poly	yes	no	0.897	0.239	0.285	9e-36
Q6CJC4	1578	Pentafunctional AROM poly	yes	no	0.845	0.224	0.315	4e-35
C5DN02	1579	Pentafunctional AROM poly	yes	no	0.852	0.226	0.302	4e-34
Q6FIV4	1579	Pentafunctional AROM poly	yes	no	0.854	0.227	0.317	2e-33
C5FQ73	1571	Pentafunctional AROM poly	N/A	no	0.878	0.234	0.296	7e-33
C4R4R8	1545	Pentafunctional AROM poly	yes	no	0.85	0.231	0.326	1e-32
Q9P7R0	1573	Pentafunctional AROM poly	yes	no	0.842	0.225	0.310	7e-32
P08566	1588	Pentafunctional AROM poly	yes	no	0.85	0.224	0.289	3e-31
C8Z543	1588	Pentafunctional AROM poly	N/A	no	0.85	0.224	0.289	3e-31

>sp|Q9SQT8|DHQSD_ARATH Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1

 Score =  595 bits (1535), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 312/425 (73%), Positives = 358/425 (84%), Gaps = 5/425 (1%)

Query: 1   MESPNLLVASGS---KLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRL 57
           ME  N+ VAS S   ++ S  + KNP+LIC P+M +S+DKMV++  KA+  GADLVEIRL
Sbjct: 68  MEPSNVYVASNSTEMEIGSHDIVKNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRL 127

Query: 58  DGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDV 117
           D LK+FNP E++KT+IK+SP+PTLFTYRP WEGGQY+GDENER DVLRLAMELGADYIDV
Sbjct: 128 DWLKDFNPLEDLKTIIKKSPLPTLFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDV 187

Query: 118 ELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL 177
           ELQVA EF  SI GKKP K KVIVSSHNYQ TPSVEDL  LVARIQ +GADIVK ATTA+
Sbjct: 188 ELQVASEFIKSIDGKKPGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAV 247

Query: 178 DITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTI 237
           DI DVAR+F IT  +QVP IGLVMGERGL+SRILC+KFGG+LTFGTL++  VSAPGQPTI
Sbjct: 248 DIADVARMFHITSKAQVPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTI 307

Query: 238 KDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFF 297
           KDLLDLYNFR++GPDTKV+GIIGKPV HSKSPI++N+AFKSV FNGV+VHLLVD++  F 
Sbjct: 308 KDLLDLYNFRRIGPDTKVYGIIGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFL 367

Query: 298 QTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGA 357
           Q YSS+DFAGFSCTIPHKEAA++CCDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+
Sbjct: 368 QAYSSSDFAGFSCTIPHKEAALQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGS 427

Query: 358 ISAIEDGLR--GRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE 415
           ISAIEDGLR  G  +     SS LA K  VVIGAGGAGKALAYGAK KGA+VVIANRTYE
Sbjct: 428 ISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYE 487

Query: 416 NLQRL 420
               L
Sbjct: 488 RALEL 492

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 5

>sp|Q74ZZ1|ARO1_ASHGO Pentafunctional AROM polypeptide OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ARO1 PE=3 SV=2

 Score =  151 bits (382), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 118/414 (28%), Positives = 213/414 (51%), Gaps = 37/414 (8%)

Query: 21   KNPTLICVPIMGESVDKMVVDMGKANAS--GADLVEIRLDGLKNFNPRENIKTL----IK 74
            K  T +C+     +   ++ +M +   +  G + VE+R+D L+N++    +K L    + 
Sbjct: 1065 KRSTFVCL-----TFQNLLPEMERIKEAVYGCEAVEVRVDHLENYSQDFVLKQLTALRLA 1119

Query: 75   ESPVPTLFTYRPIWEGGQY-DGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKK 133
               +P +FT R   +GG++ D D +   D+L + ++ G +++D+EL +    +  I  K+
Sbjct: 1120 TDSLPIVFTIRTKKQGGKFLDNDYSTLEDLLTVGLKAGVEFLDLELTLPSPIHQRILNKR 1179

Query: 134  PEKCKVIVSSHNY--QYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQI-TV 190
              K ++I S H++  +++    +  +  A+  A   D +KF  TA    D   + +  + 
Sbjct: 1180 -YKTRIIGSHHDFSGEFSWEHPEWEHRYAQALAMQVDAIKFVATAKGFGDNLSLEEFRSK 1238

Query: 191  HSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY-NFRQM 249
            H+  P+I + M E G +SR+L       +T   L     +APGQ T++ + +LY +   +
Sbjct: 1239 HTDKPLIAINMRECGKLSRVLNTILTP-ITSDVLPQA--AAPGQLTLRQINELYASIGGL 1295

Query: 250  GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQT-YSSNDFAGF 308
             P  K+F ++G P+GHS+SPIL+N  + S+G    F     D      ++  S  D  G 
Sbjct: 1296 RPK-KMF-VVGSPIGHSRSPILHNTGYNSLGLPYTFDKFETDSAEIVKKSLLSREDLGGI 1353

Query: 309  SCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRG 367
            + TIP K+  ++  DE+   AK IGAVN II ++ DG+  G+NTD++G   S I +G+  
Sbjct: 1354 AVTIPLKQDIMQYLDELTDSAKCIGAVNTIIPKK-DGRFIGHNTDWLGIKNSLIANGVPE 1412

Query: 368  RLNVSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYENLQRL 420
             +N +G           +++G+GG  +A AY   + + + + + NRT  NL  L
Sbjct: 1413 HVNTAG-----------LIVGSGGTARAAAYAFHEMQCSTIYMINRTTSNLTEL 1455

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q6CJC4|ARO1_KLULA Pentafunctional AROM polypeptide OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ARO1 PE=3 SV=1

 Score =  149 bits (376), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 121/384 (31%), Positives = 204/384 (53%), Gaps = 29/384 (7%)

Query: 49   GADLVEIRLDGLKNFNPRENIK--TLIKES--PVPTLFTYRPIWEGGQYDGDENERVD-V 103
            G + VE+R+D L +F+     K  +L++ +   +P +FT R + +GG++  D+ + ++ +
Sbjct: 1090 GCEAVELRVDHLSSFSSDFVTKQISLLRAATKSLPIVFTVRTVSQGGKFQDDDYDLLESL 1149

Query: 104  LRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNY--QYTPSVEDLSNLVAR 161
            L++A++   +YID+EL +      ++  KK    K+I S H++  ++     +  N   +
Sbjct: 1150 LKVALKNAVEYIDLELTLPNNILYNVLNKK-SNTKIIGSHHDFAAKFPWDDAEWENRYNQ 1208

Query: 162  IQASGADIVKFATTALDITDVARVFQI-TVHSQVPIIGLVMGERGLISRILCAKFGGFLT 220
              +   DIVKF  TA+   D   + +  + H+  P+I + M E G +SR+L       +T
Sbjct: 1209 ALSLDVDIVKFVGTAVSFDDNLALEKFRSTHTLKPLIAINMTETGKLSRVLNNILTP-VT 1267

Query: 221  FGTLENGIVSAPGQPTIKDLLDLYNFRQMG--PDTKVFGIIGKPVGHSKSPILYNEAFKS 278
               L +   +APGQ T+ ++  LY+  Q+G  P  K F +IG P+GHS+SPIL+N  ++ 
Sbjct: 1268 SKLLPSA--AAPGQLTLAEINQLYH--QIGGLPAKKFF-VIGSPIGHSRSPILHNTGYEL 1322

Query: 279  VGFNGVFVHLLVDDIAKF-FQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNC 337
            +G    F     +DI     +  +  D  G + TIP K   +    E+   AK+IGAVN 
Sbjct: 1323 LGLPHHFDKFETEDIEVVKKELLTREDLGGLAVTIPLKLDIIDSMFELSEAAKTIGAVNT 1382

Query: 338  IIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALA 397
            +I    + K  G NTD++G    I++ L     VS GV S+++G   ++IGAGG  +A  
Sbjct: 1383 VIPLGKN-KFRGDNTDWLG----IKNSL-----VSNGVPSSVSGSAGLIIGAGGTSRAAI 1432

Query: 398  YGAKAKGARVV-IANRTYENLQRL 420
            Y  K  G   + + NRT E LQ+L
Sbjct: 1433 YALKQIGCDTIYMLNRTTEKLQKL 1456

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C5DN02|ARO1_LACTC Pentafunctional AROM polypeptide OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=ARO1 PE=3 SV=1

 Score =  146 bits (368), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 191/383 (49%), Gaps = 25/383 (6%)

Query: 48   SGADLVEIRLDGLKNFNPRENIKTL----IKESPVPTLFTYRPIWEGGQY-DGDENERVD 102
            +G   VE+R+D LK+++     K L    +  S +P +FT R   +GGQ+ D D++    
Sbjct: 1088 AGCSAVELRVDQLKSYDLDFVAKQLSILRLASSSLPIIFTIRTKSQGGQFPDDDKSTLGS 1147

Query: 103  VLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNY--QYTPSVEDLSNLVA 160
            +L LA+E+G +++D+EL ++ E   S+   K    K+I S H++  ++  +  +  N   
Sbjct: 1148 LLSLALEVGVEFVDMELTLSSELQYSLVNNK-RNTKIIGSHHDFDAKFDWNDSEWENRYN 1206

Query: 161  RIQASGADIVKFATTALDITDVARVFQITV-HSQVPIIGLVMGERGLISRILCAKFGGFL 219
            +  +   D+VKF  TA D  D  ++ Q  + H+  P+I + M + G +SR+L       +
Sbjct: 1207 QALSLDVDVVKFVGTAKDFEDNLKLEQFRLQHTAKPLIAINMTDVGKMSRVLNTVLTP-V 1265

Query: 220  TFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSV 279
            T   L +   SAPGQ T+  + ++Y     G   K F ++G P+ HS+SP+L+N  +K +
Sbjct: 1266 TSSLLPSA--SAPGQLTLSQINEIYTLLG-GFSAKNFYVVGSPISHSRSPVLHNTGYKIL 1322

Query: 280  GFNGVFVHLLVDDIAKFF-QTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCI 338
            G    F        ++   +  S     G + TIP K   ++  DE+   AK IGAVN +
Sbjct: 1323 GLPHKFEKFETSSASEVKDKLLSKCKLGGLAVTIPLKLDIMEFMDELSESAKLIGAVNTV 1382

Query: 339  IRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAY 398
            I    DGK  G NTD++G  ++          ++ GV   + G    VIGAGG  +A  Y
Sbjct: 1383 IPL-GDGKFKGDNTDWLGIYNSF---------LANGVPENVRGNSGFVIGAGGTSRAAVY 1432

Query: 399  GAKAKG-ARVVIANRTYENLQRL 420
                 G + + + NRT E    L
Sbjct: 1433 ALHQLGCSDIHLVNRTVEKPHDL 1455

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) (taxid: 559295)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q6FIV4|ARO1_CANGA Pentafunctional AROM polypeptide OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ARO1 PE=3 SV=1

 Score =  144 bits (362), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 193/391 (49%), Gaps = 32/391 (8%)

Query: 44   KANASGADLVEIRLDGLKNFNP---RENIKTLIKESP-VPTLFTYRPIWEGGQYDGDENE 99
            KA   G D VE+R+D L N +     + I  L   +  +P +FT R   +GG++  ++ E
Sbjct: 1085 KAITYGCDAVEVRVDHLSNMDEDFVSKQISILRASTDGLPIIFTVRTKKQGGKFPDEDYE 1144

Query: 100  RVDVLRL-AMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQ--YTPSVEDLS 156
             +  L + A+++G DYID+EL +       +   K    K+I S H++   Y     +  
Sbjct: 1145 TLQKLLITALKVGVDYIDLELTLPIGIQYKVLNMK-RNTKIIGSHHDFASAYPWDHSEWE 1203

Query: 157  NLVARIQASGADIVKFATTALDITDVARVFQIT-VHSQVPIIGLVMGERGLISRILCAKF 215
            N   +  A   DIVKF   A    D   + +    H+  P+I + MG  G +SR+L    
Sbjct: 1204 NRYNQALAMDVDIVKFVGMAKSFEDNLMLERFRDSHTTKPLIAINMGAHGRVSRVL---- 1259

Query: 216  GGFLTFGTLEN-GIVSAPGQPTIKDLLDLYNFRQMGPDTKV-FGIIGKPVGHSKSPILYN 273
               LT  T E+   V+APGQ T+ ++  +Y   +MG  TK  F ++G P+GHS+SP+L+N
Sbjct: 1260 NTILTPVTSEHLSEVAAPGQLTVAEINRIYT--EMGGITKKDFFVVGSPIGHSRSPVLHN 1317

Query: 274  EAFKSVGFNGVFVHLLV---DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAK 330
              +  +G    F        +++ K      +N   G + TIP K   +K  DE+   AK
Sbjct: 1318 TGYSVLGLPHHFDKFETTSAEEVKKHLLDNKAN-LGGLAVTIPLKLDIIKYMDELTESAK 1376

Query: 331  SIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG 390
             IGAVN +I    + K  G NTD++        G+R  L VS GV  +++G   +V+GAG
Sbjct: 1377 VIGAVNTVIPL-GNSKFKGDNTDWL--------GIRNSL-VSNGVPESVSGLSGLVVGAG 1426

Query: 391  GAGKALAYGAKAKGA-RVVIANRTYENLQRL 420
            G  +A  +     G  ++ I NRT E L+ L
Sbjct: 1427 GTSRAAIFALHKLGCQKIFIVNRTTEKLEEL 1457

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C5FQ73|ARO1_ARTOC Pentafunctional AROM polypeptide OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) GN=MCYG_04845 PE=3 SV=1

 Score =  142 bits (357), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 120/405 (29%), Positives = 194/405 (47%), Gaps = 36/405 (8%)

Query: 37   KMVVDMGKANASGADLVEIRLDGLKNFNPR----------ENIKTLIKESPVPTLFTYRP 86
            ++  D+ +A   G+D +E+R+D LK+ +            E +  L   +  P +FT R 
Sbjct: 1064 QLSADILRAATFGSDAIELRVDLLKDPSSTSGVPSVGYVAEQMSFLRSHASQPLIFTIRT 1123

Query: 87   IWEGGQYDGDE-NERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHN 145
              +GGQ+  D  ++ +++ +LA+ +G++++D+EL    +   ++   K    K+I S H+
Sbjct: 1124 KAQGGQFPDDAVDKALELYKLAIRMGSEFVDLELSFPNDLLHAVTEMK-GFSKIIASHHD 1182

Query: 146  YQYTPSVEDLSNLVARIQA-SGADIVKFATTALDITDVARVFQITVHSQ----VPIIGLV 200
                 S  + S +    +A    DI+K    A    D   + Q    ++    VPII + 
Sbjct: 1183 VNSQLSWSNGSWIQYYNKALQHGDIIKLIGVAKTFEDNMALQQFKSWAEKSYPVPIIAIN 1242

Query: 201  MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGP-DTKVFGII 259
            MG +G +SRIL  +F   ++   L     +APGQ + KD+        MG  D K F + 
Sbjct: 1243 MGNKGRLSRIL-NRFMTPVSHPALP--FKAAPGQVSAKDIRQALTL--MGELDAKKFALF 1297

Query: 260  GKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAV 319
            GKP+  S+SP L+N  F   GF   +  L  D      +   S+DF G S TIP KE  +
Sbjct: 1298 GKPISASRSPALHNALFTQAGFPHDYGLLETDKAENVEKFIRSDDFGGASVTIPLKEQIM 1357

Query: 320  KCCDEVDTVAKSIGAVNCIIRRQSDG---KLFGYNTDYVGAISAIEDGLRGRLNVSGGVS 376
               DE+   AK IGAVN I+     G   +L GYNTD+ G    ++D        +G + 
Sbjct: 1358 GLLDEISPEAKIIGAVNTIVPITVSGRPPRLIGYNTDWQGMARCLKD--------AGAIC 1409

Query: 377  SALAGKLFVVIGAGGAGKALAYGAKAKG-ARVVIANRTYENLQRL 420
            S   G+  + IG+GG  +A  Y   + G + + +  RT  NL +L
Sbjct: 1410 SN-NGESALTIGSGGTARAAIYSLHSMGYSPIYLVGRTPSNLSKL 1453

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) (taxid: 554155)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C4R4R8|ARO1_PICPG Pentafunctional AROM polypeptide OS=Komagataella pastoris (strain GS115 / ATCC 20864) GN=ARO1 PE=3 SV=1

 Score =  141 bits (355), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 193/386 (50%), Gaps = 29/386 (7%)

Query: 47   ASGADLVEIRLDGLKNFNPR---ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVD- 102
             +G D VE+R+D LK  +       I  L  ++ VP LFT R   +GG++  D  E ++ 
Sbjct: 1066 TNGCDAVELRVDLLKQHDSHFISNQIGILRNQTSVPILFTIRTKSQGGRFPDDSYEDIER 1125

Query: 103  VLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLS--NLVA 160
            +L LA++LG +Y+D+EL +     DS+  K+ +  K+I S H++  T    ++   N   
Sbjct: 1126 LLNLAIKLGVEYVDLELSLPESLLDSVASKR-QFTKIIGSHHDFSGTVKWNNVEWENKYL 1184

Query: 161  RIQASGADIVKFATTALDITDVARVFQI-TVHSQVPIIGLVMGERGLISRILCAKFGGFL 219
                   DI+KF  TA  + D   +    ++H+  P IG+ MG  G +SR+    F   L
Sbjct: 1185 LALKLNVDIIKFVGTATSLNDNWELEHFRSLHTDKPFIGINMGPLGKVSRV----FNTIL 1240

Query: 220  TFGTLENGIVSA-PGQPTIKDLLDLYNFRQMGPDT-KVFGIIGKPVGHSKSPILYNEAFK 277
            T  T ++   SA PGQ T+K++ +   F Q G  + K F I+GKP+ HSKSP L+   + 
Sbjct: 1241 TPVTHKDLPSSAAPGQLTLKEINEY--FGQFGGSSRKKFYIVGKPISHSKSPELHKTFYD 1298

Query: 278  SVGFNGVFVHLLVDDIAKFFQ--TYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAV 335
              G +  F     DD AK F      +++  G + TIP K   +K  +E+   AKSIGA+
Sbjct: 1299 EFGLSHTFDKFETDDAAKVFNDLVKGNDELGGCAVTIPLKIDMLKYVNELTDSAKSIGAL 1358

Query: 336  NCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKA 395
            N II    DG+  G NTD++G    I D L        G   A    + +V+G GG  +A
Sbjct: 1359 NTII-PIGDGRFIGDNTDWIG----IRDSLH-----QAGCEIAPESSVGLVVGGGGTSRA 1408

Query: 396  LAYGAKAKG-ARVVIANRTYENLQRL 420
              Y     G +++ + NRT   L  +
Sbjct: 1409 AVYALHQMGCSKIYMLNRTPSKLSEI 1434

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Pichia pastoris (strain GS115 / ATCC 20864) (taxid: 644223)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q9P7R0|ARO1_SCHPO Pentafunctional AROM polypeptide OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=aro1 PE=3 SV=1

 Score =  138 bits (348), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 123/396 (31%), Positives = 193/396 (48%), Gaps = 42/396 (10%)

Query: 49   GADLVEIRLDGLKNFNPR------------ENIKTLIKESPVPTLFTYRPIWEGGQYDGD 96
            G D +E+R+D LK+  P+            E I  L   + +P +FT R I +GG +  D
Sbjct: 1077 GCDAIEVRVDYLKD--PKSSNGISSLDFVAEQISLLRCSTTLPIIFTIRTISQGGLFPND 1134

Query: 97   ENERVDVLRL-AMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDL 155
            + E    L L AM  G D++DVEL  + E  + +   K    K+I+S H+   T S    
Sbjct: 1135 KEEEAKELMLSAMRYGCDFVDVELGWSSETINILYQHK-GYTKLIMSWHDLSGTWSWARP 1193

Query: 156  SNLVARIQ--ASGADIVKFATTALDITDVARV----FQITVHSQVPIIGLVMGERGLISR 209
               + +++  +S AD++K    A ++ D   +     +IT    +P+I   MG  G +SR
Sbjct: 1194 HEWMQKVELASSYADVIKLVGMANNLNDNLELEEFRTRITNSMDIPLILFNMGRFGQLSR 1253

Query: 210  ILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF-RQMGPDTKVFGIIGKPVGHSKS 268
            IL  KF   +T   L +   +APGQ T+K L +      ++ P+   F + GKP+ HS+S
Sbjct: 1254 IL-NKFMTPVTHPLLPSK--AAPGQLTVKQLNEARVLIGEILPEK--FFLFGKPIKHSRS 1308

Query: 269  PILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTV 328
            PIL++ A++ +G    +     D + +  +  +  DF G + TIP+K + +K  DE+   
Sbjct: 1309 PILHSTAYELLGLPHTYEAFETDTVDEVQKVLNLPDFGGANVTIPYKLSVMKFMDELSDE 1368

Query: 329  AKSIGAVNCIIRRQSDGKLF--GYNTDYVGAISAIEDGLRG-RLNVSGGVSSALAGKLFV 385
            A+  GAVN II  +   KL   G NTD+ G      + L G  L  + G          +
Sbjct: 1369 ARFFGAVNTIIPIRIGDKLVLRGDNTDWRGIYDTFANALDGVSLRDTNG----------L 1418

Query: 386  VIGAGGAGKALAYGAKAKG-ARVVIANRTYENLQRL 420
            VIGAGG  +A  Y     G +R+ + NRT  N  R+
Sbjct: 1419 VIGAGGTSRAAIYSLHRLGVSRIYLLNRTLANSYRV 1454

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|P08566|ARO1_YEAST Pentafunctional AROM polypeptide OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARO1 PE=1 SV=1

 Score =  136 bits (343), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 191/383 (49%), Gaps = 26/383 (6%)

Query: 49   GADLVEIRLDGLKNFNP---RENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERV-DV 103
            G + VE+R+D L N++     + +  L K +  +P +FT R + +GG +  +E + + ++
Sbjct: 1099 GCEAVEVRVDHLANYSADFVSKQLSILRKATDSIPIIFTVRTMKQGGNFPDEEFKTLREL 1158

Query: 104  LRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQ--YTPSVEDLSNLVAR 161
              +A++ G +++D+EL +  +    +  K+    K+I S H++Q  Y+    +  N   +
Sbjct: 1159 YDIALKNGVEFLDLELTLPTDIQYEVINKRG-NTKIIGSHHDFQGLYSWDDAEWENRFNQ 1217

Query: 162  IQASGADIVKFATTALDITDVARVFQIT-VHSQVPIIGLVMGERGLISRILCAKFGGFLT 220
                  D+VKF  TA++  D  R+      H   P+I + M  +G ISR+L       +T
Sbjct: 1218 ALTLDVDVVKFVGTAVNFEDNLRLEHFRDTHKNKPLIAVNMTSKGSISRVLNNVLTP-VT 1276

Query: 221  FGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVG 280
               L N   +APGQ T+  +  +Y     G + K   ++GKP+GHS+SPIL+N  ++ +G
Sbjct: 1277 SDLLPNS--AAPGQLTVAQINKMYT-SMGGIEPKELFVVGKPIGHSRSPILHNTGYEILG 1333

Query: 281  FNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCI 338
                F     +   + K      + +F G + TIP K   ++  DE+   AK IGAVN +
Sbjct: 1334 LPHKFDKFETESAQLVKEKLLDGNKNFGGAAVTIPLKLDIMQYMDELTDAAKVIGAVNTV 1393

Query: 339  IRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAY 398
            I    + K  G NTD++G  +A+         ++ GV   +     +VIGAGG  +A  Y
Sbjct: 1394 IPL-GNKKFKGDNTDWLGIRNAL---------INNGVPEYVGHTAGLVIGAGGTSRAALY 1443

Query: 399  GAKAKGA-RVVIANRTYENLQRL 420
               + G  ++ I NRT   L+ L
Sbjct: 1444 ALHSLGCKKIFIINRTTSKLKPL 1466

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C8Z543|ARO1_YEAS8 Pentafunctional AROM polypeptide OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=ARO1 PE=3 SV=1

 Score =  136 bits (343), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 191/383 (49%), Gaps = 26/383 (6%)

Query: 49   GADLVEIRLDGLKNFNP---RENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERV-DV 103
            G + VE+R+D L N++     + +  L K +  +P +FT R + +GG +  +E + + ++
Sbjct: 1099 GCEAVEVRVDHLANYSADFVSKQLSILRKATDSIPIIFTVRTMKQGGNFPDEEFKTLREL 1158

Query: 104  LRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQ--YTPSVEDLSNLVAR 161
              +A++ G +++D+EL +  +    +  K+    K+I S H++Q  Y+    +  N   +
Sbjct: 1159 YDIALKNGVEFLDLELTLPTDIQYEVINKR-GNTKIIGSHHDFQGLYSWDDAEWENRFNQ 1217

Query: 162  IQASGADIVKFATTALDITDVARVFQIT-VHSQVPIIGLVMGERGLISRILCAKFGGFLT 220
                  D+VKF  TA++  D  R+      H   P+I + M  +G ISR+L       +T
Sbjct: 1218 ALTLDVDVVKFVGTAVNFEDNLRLEHFRDTHKNKPLIAVNMTSKGSISRVLNNVLTP-VT 1276

Query: 221  FGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVG 280
               L N   +APGQ T+  +  +Y     G + K   ++GKP+GHS+SPIL+N  ++ +G
Sbjct: 1277 SDLLPNS--AAPGQLTVAQINKMYT-SMGGIEPKELFVVGKPIGHSRSPILHNTGYEILG 1333

Query: 281  FNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCI 338
                F     +   + K      + +F G + TIP K   ++  DE+   AK IGAVN +
Sbjct: 1334 LPHKFDKFETESAQLVKEKLLDGNKNFGGAAVTIPLKLDIMQYMDELTDAAKVIGAVNTV 1393

Query: 339  IRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAY 398
            I    + K  G NTD++G  +A+         ++ GV   +     +VIGAGG  +A  Y
Sbjct: 1394 IPL-GNKKFKGDNTDWLGIRNAL---------INNGVPEYVGHTAGLVIGAGGTSRAALY 1443

Query: 399  GAKAKGA-RVVIANRTYENLQRL 420
               + G  ++ I NRT   L+ L
Sbjct: 1444 ALHSLGCKKIFIINRTTSKLKPL 1466

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) (taxid: 643680)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
255551621	539	shikimate dehydrogenase, putative [Ricin	0.961	0.749	0.821	0.0
224107417	538	dehydroquinate dehydratase/ shikimate de	0.964	0.752	0.819	0.0
359477446	522	PREDICTED: bifunctional 3-dehydroquinate	0.964	0.775	0.803	0.0
58047529	508	3-dehydroquinate dehydratase/shikimate 5	0.945	0.781	0.808	1e-179
356495945	527	PREDICTED: bifunctional 3-dehydroquinate	0.990	0.789	0.757	1e-176
76782194	536	putative 3-dehydroquinate dehydratase/sh	0.985	0.772	0.756	1e-176
297736925	495	unnamed protein product [Vitis vinifera]	0.911	0.773	0.812	1e-174
281193024	526	dehydroquinate dehydratase [Solanum tube	0.980	0.783	0.748	1e-172
449503035	542	PREDICTED: bifunctional 3-dehydroquinate	0.954	0.739	0.768	1e-171
397911050	377	shikimate dehydrogenase, partial [Gunner	0.895	0.997	0.805	1e-171

>gi|255551621|ref|XP_002516856.1| shikimate dehydrogenase, putative [Ricinus communis] gi|223543944|gb|EEF45470.1| shikimate dehydrogenase, putative [Ricinus communis]

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/404 (82%), Positives = 364/404 (90%)

Query: 17  GGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES 76
           GG+RKNPTLIC PIM +SVDKM++++ KA  +GADLVEIRLD LK FN  ++IKTLI  S
Sbjct: 25  GGLRKNPTLICAPIMADSVDKMLINLVKAKENGADLVEIRLDSLKTFNASDDIKTLITRS 84

Query: 77  PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEK 136
           P+PTLFTYRP WEGG+YDGDENER+D LRLAMELGADYIDVEL+VA +FNDSIRG KP K
Sbjct: 85  PLPTLFTYRPKWEGGEYDGDENERLDALRLAMELGADYIDVELKVAHKFNDSIRGNKPAK 144

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPI 196
           CKVIVSSHNY  TPSVEDL NLVA IQA+GADIVK ATTALDITDVAR+FQITVHSQVPI
Sbjct: 145 CKVIVSSHNYHNTPSVEDLGNLVADIQAAGADIVKIATTALDITDVARIFQITVHSQVPI 204

Query: 197 IGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVF 256
           IG+VMGERGLISRILCAKFGG+LTFGTLE+GIVSAPGQP IKDLLDLYNFRQ+GPDTKV+
Sbjct: 205 IGIVMGERGLISRILCAKFGGYLTFGTLESGIVSAPGQPMIKDLLDLYNFRQIGPDTKVY 264

Query: 257 GIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKE 316
           GIIGKPVGHSKSP+LYNEAFKSVGFNGV+VHLLVDDIA F QT+SS DFAGFSCTIPHKE
Sbjct: 265 GIIGKPVGHSKSPVLYNEAFKSVGFNGVYVHLLVDDIASFLQTFSSTDFAGFSCTIPHKE 324

Query: 317 AAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVS 376
           AAV CCD +D+VA+SIGAVNCIIRRQ DGKLFGYNTDY GAI+AIE+GLR   N+SG   
Sbjct: 325 AAVDCCDGIDSVARSIGAVNCIIRRQRDGKLFGYNTDYDGAITAIEEGLRVSQNISGAAD 384

Query: 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420
           S LAGKLFVVIGAGGAGKALAYGAK KGA+VVIANRTYE  + L
Sbjct: 385 SPLAGKLFVVIGAGGAGKALAYGAKQKGAKVVIANRTYERAKGL 428

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107417|ref|XP_002314474.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa] gi|222863514|gb|EEF00645.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa]

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/405 (81%), Positives = 364/405 (89%)

Query: 16  SGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE 75
           SGG+R+NPTLIC PIM +SVDKM + M +A + GADLVEIRLD LK+FNP  +IKTLI  
Sbjct: 23  SGGVRRNPTLICTPIMADSVDKMAILMAEAKSVGADLVEIRLDSLKDFNPNSDIKTLILH 82

Query: 76  SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPE 135
           SP+PTLFTYRP+WEGGQY+GDE  R+D LRLAMELGADYIDVEL+VA EFN+ +RG KP 
Sbjct: 83  SPLPTLFTYRPMWEGGQYNGDEKPRLDALRLAMELGADYIDVELKVAHEFNELLRGNKPG 142

Query: 136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVP 195
           KCK+IVSSHNY+ TPSVE+L NLVARIQA+GADIVK ATTALDI+DVAR+FQITVHSQVP
Sbjct: 143 KCKLIVSSHNYENTPSVEELGNLVARIQAAGADIVKIATTALDISDVARIFQITVHSQVP 202

Query: 196 IIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKV 255
           IIGLVMGERGLISRILCAKFGG+LTFGTLE+G+VSAPGQPTIKDLLDLYNFR +GPDTKV
Sbjct: 203 IIGLVMGERGLISRILCAKFGGYLTFGTLESGVVSAPGQPTIKDLLDLYNFRLIGPDTKV 262

Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHK 315
           FGIIGKPVGHSKSP+L+NEAFKSVG NGV+VHLLVDDIA+F QTYSS DFAGFSCTIPHK
Sbjct: 263 FGIIGKPVGHSKSPVLFNEAFKSVGINGVYVHLLVDDIARFLQTYSSTDFAGFSCTIPHK 322

Query: 316 EAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGV 375
           E A KCCDEV  VAKSIGAVNCIIRRQ+DGKLFGYNTDYVGAISAIE+GLR   NVS  V
Sbjct: 323 EDAAKCCDEVHPVAKSIGAVNCIIRRQNDGKLFGYNTDYVGAISAIEEGLRASQNVSNTV 382

Query: 376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420
            S LAGKLFVVIGAGGAGKALAYGAK KGARVVIANRTYE  + L
Sbjct: 383 GSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKVL 427

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477446|ref|XP_002277395.2| PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Vitis vinifera]

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/408 (80%), Positives = 359/408 (87%), Gaps = 3/408 (0%)

Query: 16  SGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE 75
           SGGM KN TLICVPIMGE+++KMVVDM KA  SGADLVE+RLD LK FNPR++++ LI++
Sbjct: 3   SGGMSKNSTLICVPIMGETIEKMVVDMSKAKTSGADLVEVRLDTLKRFNPRQDLEVLIRK 62

Query: 76  SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPE 135
            P+PTLFTYRP WEGGQY+GDEN R D LRLAMELGADY+D+EL+VA EF +SI G+KPE
Sbjct: 63  CPLPTLFTYRPKWEGGQYEGDENSRRDALRLAMELGADYVDIELKVAHEFINSIHGRKPE 122

Query: 136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV- 194
           K KVIVSSHNYQ TPSVEDL NLV  IQA+GADIVK ATTAL+ITDVAR+FQITVHSQV 
Sbjct: 123 KFKVIVSSHNYQNTPSVEDLGNLVVSIQATGADIVKIATTALEITDVARIFQITVHSQVS 182

Query: 195 --PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPD 252
             P+IGLVMGERGLISRILC KF G+LTFG+LE GIVSAPGQPTIKDLL+LYNFRQ+GPD
Sbjct: 183 SVPVIGLVMGERGLISRILCPKFSGYLTFGSLEPGIVSAPGQPTIKDLLNLYNFRQLGPD 242

Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTI 312
           TKVFG+IGKPV HSKSP LYNEAFKSVGFNGV+VHLLVDDIAKFF TYS+ DFAGFSCTI
Sbjct: 243 TKVFGVIGKPVSHSKSPHLYNEAFKSVGFNGVYVHLLVDDIAKFFHTYSAADFAGFSCTI 302

Query: 313 PHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVS 372
           PHKEAA+KCCDEV  VAKSIGAVNCIIRR SDGKLFGYNTDYVGAISAIEDGLR    +S
Sbjct: 303 PHKEAALKCCDEVSPVAKSIGAVNCIIRRPSDGKLFGYNTDYVGAISAIEDGLRDLHKIS 362

Query: 373 GGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420
               S LAGKLFVVIGAGGAGKALAYGAK KGARVVIANRTY   + L
Sbjct: 363 STSGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYARAREL 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|58047529|gb|AAW65140.1| 3-dehydroquinate dehydratase/shikimate 5-dehydrogenase [Juglans regia]

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 321/397 (80%), Positives = 348/397 (87%)

Query: 24  TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFT 83
           TL+C PIM ESVDKMV++M KA    ADLVEIRLD LK+FNP  ++KT+IK SP+PTLFT
Sbjct: 1   TLVCAPIMAESVDKMVINMNKAKQGDADLVEIRLDSLKSFNPSNDLKTIIKASPLPTLFT 60

Query: 84  YRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSS 143
           YRP WEGGQYDGDE +R+D LRLAME GADYIDVELQVA EFNDSI G+KPE  KVIVSS
Sbjct: 61  YRPKWEGGQYDGDEKKRLDALRLAMEFGADYIDVELQVACEFNDSIYGRKPENSKVIVSS 120

Query: 144 HNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGE 203
           HNYQ TPS EDL NLVARIQA+GADIVK ATTAL+I DVAR+FQITVHSQVPIIG+VMGE
Sbjct: 121 HNYQDTPSAEDLGNLVARIQATGADIVKIATTALEIADVARIFQITVHSQVPIIGIVMGE 180

Query: 204 RGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPV 263
           RG +SRILC KFGGFLTFGT+E+GIVSAPGQPT+KDLL LYN R++GPDTKVFGIIGKPV
Sbjct: 181 RGFMSRILCPKFGGFLTFGTIESGIVSAPGQPTMKDLLHLYNLRRIGPDTKVFGIIGKPV 240

Query: 264 GHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCD 323
            HSKSPILYNEAFKSV FNGV++ LLVDDIA F QTYSS DFAGFSCTIPHKEAA+KCCD
Sbjct: 241 HHSKSPILYNEAFKSVCFNGVYIPLLVDDIANFLQTYSSTDFAGFSCTIPHKEAALKCCD 300

Query: 324 EVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKL 383
           EVD VAKSIGAVNCIIRR +DGKL GYNTDYVGAISAIEDGLRG  N S    S LAGKL
Sbjct: 301 EVDPVAKSIGAVNCIIRRPTDGKLVGYNTDYVGAISAIEDGLRGSHNSSNTADSPLAGKL 360

Query: 384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420
           FVVIGAGGAGKALAYGAK KGARVVIANRTY+  + L
Sbjct: 361 FVVIGAGGAGKALAYGAKEKGARVVIANRTYDRAREL 397

Source: Juglans regia

Species: Juglans regia

Genus: Juglans

Family: Juglandaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495945|ref|XP_003516831.1| PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Glycine max]

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/420 (75%), Positives = 356/420 (84%), Gaps = 4/420 (0%)

Query: 1   MESPNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGL 60
           M+SPN L    S   + G RKN TLICVPIMGESV+KM +D+ KA A GADLVEIRLD L
Sbjct: 1   MDSPNAL----STAPAAGSRKNATLICVPIMGESVEKMEIDVDKAKAGGADLVEIRLDSL 56

Query: 61  KNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQ 120
           K F+P  ++   I+   +P LFTYRP WEGG YDGDEN+R+D LRLAMELGADYID+ELQ
Sbjct: 57  KTFDPYRDLNAFIQHRSLPLLFTYRPKWEGGMYDGDENKRLDALRLAMELGADYIDIELQ 116

Query: 121 VAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDIT 180
           VA EF DSIRGK   K KVIVSSHNYQ TPS+EDL NLVARIQA+GADIVK ATTALDIT
Sbjct: 117 VAHEFYDSIRGKTFNKTKVIVSSHNYQLTPSIEDLGNLVARIQATGADIVKIATTALDIT 176

Query: 181 DVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
           DVAR+FQI VHSQVP IGLVMG+RGLISRIL AKFGG+LTFGTLE+G+VSAPGQPT+KDL
Sbjct: 177 DVARMFQIMVHSQVPFIGLVMGDRGLISRILSAKFGGYLTFGTLESGVVSAPGQPTLKDL 236

Query: 241 LDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTY 300
           L LYN RQ+ PDTKVFGIIGKPVGHSKSPIL+NE FKS+G NGV++ LLVDD+A F +TY
Sbjct: 237 LYLYNLRQLAPDTKVFGIIGKPVGHSKSPILFNEVFKSIGLNGVYLFLLVDDLANFLRTY 296

Query: 301 SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISA 360
           SS DF GFS TIPHKE A+KCCDEVD VAKSIGAVNCI+RR +DGKL GYNTDYVGAI+A
Sbjct: 297 SSTDFVGFSVTIPHKETALKCCDEVDPVAKSIGAVNCIVRRPTDGKLIGYNTDYVGAITA 356

Query: 361 IEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420
           IE+GLRG+ N S    S LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY++ ++L
Sbjct: 357 IENGLRGKHNGSSTTISPLAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDHARKL 416

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76782194|gb|ABA54867.1| putative 3-dehydroquinate dehydratase/shikimate dehydrogenase [Fagus sylvatica]

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 326/431 (75%), Positives = 363/431 (84%), Gaps = 17/431 (3%)

Query: 1   MESPNLLVASGS---KLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRL 57
           M+S N+L+AS S   ++  G +RKNPTL+C PIM ESVDKMV++M KA   GADLVEIRL
Sbjct: 1   MDSTNVLLASSSASLQIGGGEIRKNPTLVCAPIMAESVDKMVINMDKAKQGGADLVEIRL 60

Query: 58  DGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDV 117
           D LK+FNP  ++KTLIKE P+PTLFTYRP WEGGQYDGDE +R+D LRLAME GADYIDV
Sbjct: 61  DSLKSFNPNGDLKTLIKECPLPTLFTYRPKWEGGQYDGDEKKRLDALRLAMEFGADYIDV 120

Query: 118 ELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL 177
           ELQVA+EFN+SI GKKPE  KVIVSSHNYQ TPSVEDL NLVARIQA+GADIVKFATTAL
Sbjct: 121 ELQVAQEFNESIYGKKPEMFKVIVSSHNYQNTPSVEDLGNLVARIQATGADIVKFATTAL 180

Query: 178 DITDVARVFQITVHSQ---VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQ 234
           +ITDVAR+FQI VHSQ   VPII +VMGERG ISRILC KFGGFL+FGT+E+GIVSAPGQ
Sbjct: 181 EITDVARIFQIIVHSQVSSVPIIAIVMGERGFISRILCPKFGGFLSFGTIESGIVSAPGQ 240

Query: 235 PTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIA 294
           P +KDLL LYNFRQ+GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGV+V      ++
Sbjct: 241 PIMKDLLHLYNFRQIGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVYV------LS 294

Query: 295 KFFQTYSSND-----FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFG 349
            +     S D     FAGFS TIPHKEAA+KCCDEVD VAKSIGAVNCI+RR +DGK+FG
Sbjct: 295 WWMTCKISPDLLILRFAGFSITIPHKEAALKCCDEVDPVAKSIGAVNCIVRRSTDGKIFG 354

Query: 350 YNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
           YNTDYVGAISAIEDGLRG  N+S    S LAGKLFVVIGAGGAGKALAYGAK KGARVVI
Sbjct: 355 YNTDYVGAISAIEDGLRGSKNISYAADSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVI 414

Query: 410 ANRTYENLQRL 420
           ANRTYE  + +
Sbjct: 415 ANRTYERAKEI 425

Source: Fagus sylvatica

Species: Fagus sylvatica

Genus: Fagus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736925|emb|CBI26126.3| unnamed protein product [Vitis vinifera]

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 311/383 (81%), Positives = 339/383 (88%)

Query: 38  MVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDE 97
           MVVDM KA  SGADLVE+RLD LK FNPR++++ LI++ P+PTLFTYRP WEGGQY+GDE
Sbjct: 1   MVVDMSKAKTSGADLVEVRLDTLKRFNPRQDLEVLIRKCPLPTLFTYRPKWEGGQYEGDE 60

Query: 98  NERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSN 157
           N R D LRLAMELGADY+D+EL+VA EF +SI G+KPEK KVIVSSHNYQ TPSVEDL N
Sbjct: 61  NSRRDALRLAMELGADYVDIELKVAHEFINSIHGRKPEKFKVIVSSHNYQNTPSVEDLGN 120

Query: 158 LVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGG 217
           LV  IQA+GADIVK ATTAL+ITDVAR+FQITVHSQVP+IGLVMGERGLISRILC KF G
Sbjct: 121 LVVSIQATGADIVKIATTALEITDVARIFQITVHSQVPVIGLVMGERGLISRILCPKFSG 180

Query: 218 FLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFK 277
           +LTFG+LE GIVSAPGQPTIKDLL+LYNFRQ+GPDTKVFG+IGKPV HSKSP LYNEAFK
Sbjct: 181 YLTFGSLEPGIVSAPGQPTIKDLLNLYNFRQLGPDTKVFGVIGKPVSHSKSPHLYNEAFK 240

Query: 278 SVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNC 337
           SVGFNGV+VHLLVDDIAKFF TYS+ DFAGFSCTIPHKEAA+KCCDEV  VAKSIGAVNC
Sbjct: 241 SVGFNGVYVHLLVDDIAKFFHTYSAADFAGFSCTIPHKEAALKCCDEVSPVAKSIGAVNC 300

Query: 338 IIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALA 397
           IIRR SDGKLFGYNTDYVGAISAIEDGLR    +S    S LAGKLFVVIGAGGAGKALA
Sbjct: 301 IIRRPSDGKLFGYNTDYVGAISAIEDGLRDLHKISSTSGSPLAGKLFVVIGAGGAGKALA 360

Query: 398 YGAKAKGARVVIANRTYENLQRL 420
           YGAK KGARVVIANRTY   + L
Sbjct: 361 YGAKEKGARVVIANRTYARAREL 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|281193024|gb|ADA57640.1| dehydroquinate dehydratase [Solanum tuberosum]

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 313/418 (74%), Positives = 357/418 (85%), Gaps = 6/418 (1%)

Query: 5   NLLVASGSKLVSG-GMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNF 63
            L+V SG K + G  MRKN TLIC PIM +SVD+M++ M KA  SGADLV +R+D LK+F
Sbjct: 2   ELVVDSGVKKMEGEAMRKNQTLICAPIMADSVDQMLILMQKAKTSGADLVGVRVDSLKSF 61

Query: 64  NPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR 123
           NPR +I  LIK+ P+PTLFTYRP WEGGQY GDE  R+D LRLAMELGADYIDVEL+   
Sbjct: 62  NPRPDIDALIKQCPLPTLFTYRPTWEGGQYAGDEMSRLDALRLAMELGADYIDVELKAID 121

Query: 124 EFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVA 183
           EFN+++ G K  KCK+IVSSHNY+ TPS EDL NLVARIQASGADIVKFATTA DITDVA
Sbjct: 122 EFNNALHGNKSAKCKLIVSSHNYESTPSAEDLGNLVARIQASGADIVKFATTAQDITDVA 181

Query: 184 RVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDL 243
           RVFQITVHSQVPII +VMGE+GL+SRILC KFGG+LTFGTLE G VSAPGQPT++DLL+L
Sbjct: 182 RVFQITVHSQVPIIAMVMGEKGLMSRILCPKFGGYLTFGTLEMGKVSAPGQPTVEDLLNL 241

Query: 244 YNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSN 303
           YNFRQ+GPDTK+FGIIGKPV HSK P+LYNE+F+SVGFNGVF+HLLVDDIA FF+TYSS 
Sbjct: 242 YNFRQLGPDTKIFGIIGKPVSHSKPPLLYNESFRSVGFNGVFMHLLVDDIANFFRTYSSL 301

Query: 304 DFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED 363
           DFAGFSCTIPHKEAA+ CC E+D  AK+IGAVNCIIRR  DGKLFG NTDY+GAISAIE+
Sbjct: 302 DFAGFSCTIPHKEAALDCCAEIDPTAKAIGAVNCIIRR-PDGKLFGCNTDYIGAISAIEE 360

Query: 364 GLRG-RLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420
           GL+G + ++SG   S LAGKLFVVIGAGGAGKA+AYGAK KGARVVIANRTYE  + L
Sbjct: 361 GLQGSQPSISG---SPLAGKLFVVIGAGGAGKAIAYGAKEKGARVVIANRTYERAREL 415

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503035|ref|XP_004161812.1| PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Cucumis sativus]

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 309/402 (76%), Positives = 345/402 (85%), Gaps = 1/402 (0%)

Query: 19  MRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPV 78
           +++N +L+CVPIM +S D M+ D  KA  SGADLVEIRLD LK FN + ++ TL+KE P+
Sbjct: 28  IKRNSSLVCVPIMADSADLMIADARKAKTSGADLVEIRLDSLKIFNQQTDLGTLVKECPL 87

Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCK 138
           PTLFTYRP WEGGQYDGDENER++VLRL MELGADY+DVELQVAREF DSIRGKKPEKCK
Sbjct: 88  PTLFTYRPKWEGGQYDGDENERLEVLRLVMELGADYVDVELQVAREFIDSIRGKKPEKCK 147

Query: 139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIG 198
           VIVSSHNY+ TPS++DL  LVARIQ SGADIVK ATTA DITDV+R+F I VHSQVP+IG
Sbjct: 148 VIVSSHNYEETPSLDDLGKLVARIQESGADIVKIATTARDITDVSRIFHIIVHSQVPLIG 207

Query: 199 LVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGI 258
           LVMGERGLISRILCAKFGG+LTF TLE GIVSAPGQPTI+DLL LYNFRQ+GPDTKV+GI
Sbjct: 208 LVMGERGLISRILCAKFGGYLTFATLEAGIVSAPGQPTIQDLLTLYNFRQIGPDTKVYGI 267

Query: 259 IGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAA 318
           IGKPVGHSKSP+L+NEAFKS+ FNGV+VH LVDDI  F QTYSS DFAGFSCTIPHKEAA
Sbjct: 268 IGKPVGHSKSPMLFNEAFKSIRFNGVYVHYLVDDIVNFLQTYSSLDFAGFSCTIPHKEAA 327

Query: 319 VKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSA 378
            K CDEVD VAKSIGAVNCI+RR  DGK  GYNTDYVGAISAIE+ L+G    S    S 
Sbjct: 328 AKFCDEVDPVAKSIGAVNCIVRRH-DGKFCGYNTDYVGAISAIEEKLQGDYTGSPLSGSP 386

Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420
           L G+LFVVIGAGGAGKALAYGAK KGA+V+IANRTYE  + L
Sbjct: 387 LFGRLFVVIGAGGAGKALAYGAKEKGAKVMIANRTYERAKEL 428

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|397911050|gb|AFO68801.1| shikimate dehydrogenase, partial [Gunnera manicata]

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 311/386 (80%), Positives = 342/386 (88%), Gaps = 10/386 (2%)

Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYR 85
           ICVP+  ESVD+M++ M KA  SG DLVE+RLD LK+FNP ++++ LIKE P+PT+FT+R
Sbjct: 2   ICVPLTAESVDEMLIGMRKAKESGVDLVEVRLDFLKSFNPPQDLEFLIKECPLPTIFTFR 61

Query: 86  PIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHN 145
           P WEGGQYDG+EN+R+D LRLAMELGADYIDVELQVAREFN+SI  KKPEK KVIVSSHN
Sbjct: 62  PKWEGGQYDGEENKRLDALRLAMELGADYIDVELQVAREFNNSISAKKPEKFKVIVSSHN 121

Query: 146 YQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERG 205
           Y+ TPSVEDL NLVA+IQA+GADIVK ATTALDITDVAR+FQITVHSQVPIIGLVMGERG
Sbjct: 122 YENTPSVEDLGNLVAKIQATGADIVKIATTALDITDVARIFQITVHSQVPIIGLVMGERG 181

Query: 206 LISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGH 265
           LISR+LC KFGG+LTF TLE G VSAPGQPTI DLL++YNFR +GPDTKVFGIIGKPVGH
Sbjct: 182 LISRLLCPKFGGYLTFATLEAGKVSAPGQPTINDLLNVYNFRLIGPDTKVFGIIGKPVGH 241

Query: 266 SKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEV 325
           SKSP+LYN AFKS+GFNGV+VHLLVDDIAKF QTYSS DF GFS TIPHKE AVKCC+EV
Sbjct: 242 SKSPLLYNSAFKSIGFNGVYVHLLVDDIAKFLQTYSSTDFVGFSVTIPHKENAVKCCNEV 301

Query: 326 DTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFV 385
           D VAKSI AVNCII+RQSDGKLFGYNTDYVGAISAIEDGLR          S LAGKLFV
Sbjct: 302 DPVAKSIEAVNCIIKRQSDGKLFGYNTDYVGAISAIEDGLR----------SPLAGKLFV 351

Query: 386 VIGAGGAGKALAYGAKAKGARVVIAN 411
           VIGAGGAGKALAYGAKAKGARVVIAN
Sbjct: 352 VIGAGGAGKALAYGAKAKGARVVIAN 377

Source: Gunnera manicata

Species: Gunnera manicata

Genus: Gunnera

Family: Gunneraceae

Order: Gunnerales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
TAIR|locus:2081036	603	MEE32 "MATERNAL EFFECT EMBRYO	1.0	0.696	0.694	2.3e-151
SGD|S000002534	1588	ARO1 "Pentafunctional arom pro	0.776	0.205	0.292	1e-28
TIGR_CMR|CBU_2075	233	CBU_2075 "3-dehydroquinate deh	0.511	0.922	0.32	5e-28
POMBASE|SPAC1834.02	1573	aro1 "pentafunctional aromatic	0.745	0.198	0.315	8.3e-27
ASPGD|ASPL0000055969	1583	aromA [Emericella nidulans (ta	0.740	0.196	0.303	9.3e-22
CGD|CAL0004346	1551	ARO1 [Candida albicans (taxid:	0.842	0.228	0.276	1.6e-21
TIGR_CMR|DET_0466	222	DET_0466 "3-dehydroquinate deh	0.497	0.941	0.325	7.5e-21
TIGR_CMR|BA_4561	308	BA_4561 "shikimate 5-dehydroge	0.254	0.347	0.378	2.6e-17
TIGR_CMR|CHY_0623	280	CHY_0623 "shikimate 5-dehydrog	0.371	0.557	0.315	1.4e-16
UNIPROTKB|P05194	252	aroD "AroD" [Escherichia coli	0.507	0.845	0.277	1.9e-16

TAIR|locus:2081036 MEE32 "MATERNAL EFFECT EMBRYO ARREST 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 1477 (525.0 bits), Expect = 2.3e-151, P = 2.3e-151
 Identities = 295/425 (69%), Positives = 341/425 (80%)

Query:     1 MESPNLLVASGS---KLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRL 57
             ME  N+ VAS S   ++ S  + KNP+LIC P+M +S+DKMV++  KA+  GADLVEIRL
Sbjct:    68 MEPSNVYVASNSTEMEIGSHDIVKNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRL 127

Query:    58 DGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDV 117
             D LK+FNP E++KT+IK+SP+PTLFTYRP WEGGQY+GDENER DVLRLAMELGADYIDV
Sbjct:   128 DWLKDFNPLEDLKTIIKKSPLPTLFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDV 187

Query:   118 ELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL 177
             ELQVA EF  SI GKKP K KVIVSSHNYQ TPSVEDL  LVARIQ +GADIVK ATTA+
Sbjct:   188 ELQVASEFIKSIDGKKPGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAV 247

Query:   178 DITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTI 237
             DI DVAR+F IT  +QVP IGLVMGERGL+SRILC+KFGG+LTFGTL++  VSAPGQPTI
Sbjct:   248 DIADVARMFHITSKAQVPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTI 307

Query:   238 KDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFF 297
             KDLLDLYNFR++GPDTKV+GIIGKPV HSKSPI++N+AFKSV FNGV+VHLLVD++  F 
Sbjct:   308 KDLLDLYNFRRIGPDTKVYGIIGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFL 367

Query:   298 QTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGA 357
             Q YSS+DFAGFSCTIPHKEAA++CCDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+
Sbjct:   368 QAYSSSDFAGFSCTIPHKEAALQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGS 427

Query:   358 ISAIEDGLRGRLNVSG--GVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYE 415
             ISAIEDGLR   + S     SS LA K  VVI                  +VVIANRTYE
Sbjct:   428 ISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYE 487

Query:   416 NLQRL 420
                 L
Sbjct:   488 RALEL 492

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA;IDA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019632 "shikimate metabolic process" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

SGD|S000002534 ARO1 "Pentafunctional arom protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 334 (122.6 bits), Expect = 1.0e-28, P = 1.0e-28
 Identities = 101/345 (29%), Positives = 176/345 (51%)

Query:    49 GADLVEIRLDGLKNFNP---RENIKTLIKESP-VPTLFTYRPIWEGGQYDGDENERV-DV 103
             G + VE+R+D L N++     + +  L K +  +P +FT R + +GG +  +E + + ++
Sbjct:  1099 GCEAVEVRVDHLANYSADFVSKQLSILRKATDSIPIIFTVRTMKQGGNFPDEEFKTLREL 1158

Query:   104 LRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLS--NLVAR 161
               +A++ G +++D+EL +  +    +  K+    K+I S H++Q   S +D    N   +
Sbjct:  1159 YDIALKNGVEFLDLELTLPTDIQYEVINKRGNT-KIIGSHHDFQGLYSWDDAEWENRFNQ 1217

Query:   162 IQASGADIVKFATTALDITDVARV--FQITVHSQVPIIGLVMGERGLISRILCAKFGGFL 219
                   D+VKF  TA++  D  R+  F+ T H   P+I + M  +G ISR+L       +
Sbjct:  1218 ALTLDVDVVKFVGTAVNFEDNLRLEHFRDT-HKNKPLIAVNMTSKGSISRVLNNVLTP-V 1275

Query:   220 TFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSV 279
             T   L N   +APGQ T+  +  +Y     G + K   ++GKP+GHS+SPIL+N  ++ +
Sbjct:  1276 TSDLLPNS--AAPGQLTVAQINKMYT-SMGGIEPKELFVVGKPIGHSRSPILHNTGYEIL 1332

Query:   280 GFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNC 337
             G    F     +   + K      + +F G + TIP K   ++  DE+   AK IGAVN 
Sbjct:  1333 GLPHKFDKFETESAQLVKEKLLDGNKNFGGAAVTIPLKLDIMQYMDELTDAAKVIGAVNT 1392

Query:   338 IIRRQSDGKLFGYNTDYVGAISA-IEDGLRGRLNVSGGVSSALAG 381
             +I    + K  G NTD++G  +A I +G+   +  + G+     G
Sbjct:  1393 VIPL-GNKKFKGDNTDWLGIRNALINNGVPEYVGHTAGLVIGAGG 1436

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA;IDA

GO:0004765 "shikimate kinase activity" evidence=IEA;IDA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA;IDA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA;IDA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0009423 "chorismate biosynthetic process" evidence=IEA;TAS

TIGR_CMR|CBU_2075 CBU_2075 "3-dehydroquinate dehydratase, type I" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 72/225 (32%), Positives = 129/225 (57%)

Query:    22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTL 81
             N   ICV ++G+++++ +  + +A  +  D VE+R+D L+  NP   ++ +   +    +
Sbjct:     3 NTPRICVVVIGKTLEEFLSQL-EAAQTAVDFVELRIDYLEQINPNW-VRIIKNHTHKKAI 60

Query:    82 FTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIV 141
                R   +GG++ G    + ++L+   +LG DY+D++L VA +   SI  KK    K+I+
Sbjct:    61 LCCRARADGGKFLGTPEAQQEILQAGNDLGFDYLDIDLPVANKI--SIHEKK---AKIII 115

Query:   142 SSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ--VPIIGL 199
             S HN+ +TP + +L+ L+  ++    D+ KFAT +    DV  +F++ ++ +    +I L
Sbjct:   116 SYHNFLHTPPITELNFLLENMRLFNPDVFKFATKSEQYEDVKTLFKLLINKKNNENMIVL 175

Query:   200 VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY 244
              MGE+G I R+L    GG+LTF ++ NG +SAPGQ   K + D Y
Sbjct:   176 GMGEQGKIIRLLSPLLGGYLTFSSI-NGAISAPGQIDFKTMQDFY 219

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=ISS

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=ISS

POMBASE|SPAC1834.02 aro1 "pentafunctional aromatic polypeptide Aro1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 316 (116.3 bits), Expect = 8.3e-27, P = 8.3e-27
 Identities = 107/339 (31%), Positives = 171/339 (50%)

Query:    49 GADLVEIRLDGLKNFNPRENIKTL--IKE--------SPVPTLFTYRPIWEGGQYDGDEN 98
             G D +E+R+D LK+      I +L  + E        + +P +FT R I +GG +  D+ 
Sbjct:  1077 GCDAIEVRVDYLKDPKSSNGISSLDFVAEQISLLRCSTTLPIIFTIRTISQGGLFPNDKE 1136

Query:    99 ERVDVLRL-AMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSN 157
             E    L L AM  G D++DVEL  + E  + +   K    K+I+S H+   T S      
Sbjct:  1137 EEAKELMLSAMRYGCDFVDVELGWSSETINILYQHKGYT-KLIMSWHDLSGTWSWARPHE 1195

Query:   158 LVARIQ--ASGADIVKFATTALDITDVARV--FQ--ITVHSQVPIIGLVMGERGLISRIL 211
              + +++  +S AD++K    A ++ D   +  F+  IT    +P+I   MG  G +SRIL
Sbjct:  1196 WMQKVELASSYADVIKLVGMANNLNDNLELEEFRTRITNSMDIPLILFNMGRFGQLSRIL 1255

Query:   212 CAKFGGFLTFGTLENGIVSAPGQPTIKDLLDL-YNFRQMGPDTKVFGIIGKPVGHSKSPI 270
               KF   +T   L +   +APGQ T+K L +      ++ P+ K F + GKP+ HS+SPI
Sbjct:  1256 -NKFMTPVTHPLLPSK--AAPGQLTVKQLNEARVLIGEILPE-KFF-LFGKPIKHSRSPI 1310

Query:   271 LYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAK 330
             L++ A++ +G    +     D + +  +  +  DF G + TIP+K + +K  DE+   A+
Sbjct:  1311 LHSTAYELLGLPHTYEAFETDTVDEVQKVLNLPDFGGANVTIPYKLSVMKFMDELSDEAR 1370

Query:   331 SIGAVNCIIRRQSDGKLF--GYNTDYVGAISAIEDGLRG 367
               GAVN II  +   KL   G NTD+ G      + L G
Sbjct:  1371 FFGAVNTIIPIRIGDKLVLRGDNTDWRGIYDTFANALDG 1409

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA

GO:0004765 "shikimate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA

GO:0009423 "chorismate biosynthetic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

ASPGD|ASPL0000055969 aromA [Emericella nidulans (taxid:162425)]

 Score = 281 (104.0 bits), Expect = 9.3e-22, P = 9.3e-22
 Identities = 104/343 (30%), Positives = 162/343 (47%)

Query:    49 GADLVEIRLDGLK-----NFNPR-----ENIKTLIKESPVPTLFTYRPIWEGGQY-DGDE 97
             G+D VE+R+D LK     N  P      E +  L     +P +FT R   +GG++ D   
Sbjct:  1074 GSDAVELRVDLLKDPASNNDIPSVDYVVEQLSFLRSRVTLPIIFTIRTQSQGGRFPDNAH 1133

Query:    98 NERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSN 157
             +  +++ RLA   G +++D+E+    +   ++   K    K+I S H+ +   S  ++S 
Sbjct:  1134 DAALELYRLAFRSGCEFVDLEIAFPEDMLRAVTEMKGFS-KIIASHHDPKGELSWANMSW 1192

Query:   158 LVARIQA-SGADIVKFATTALDITD--VARVFQ---ITVHSQVPIIGLVMGERGLISRIL 211
             +    +A    DI+K    A +I D    R F+      H  VP+I + MG++G +SRIL
Sbjct:  1193 IKFYNKALEYGDIIKLVGVARNIDDNTALRKFKNWAAEAHD-VPLIAINMGDQGQLSRIL 1251

Query:   212 CAKFGGFLTFGTLEN-GIVSAPGQPTIKDLLDLYNFRQMGP-DTKVFGIIGKPVGHSKSP 269
                  GF+T  +  +    +APGQ +  ++        MG    K F I G P+  S+SP
Sbjct:  1252 ----NGFMTPVSHPSLPFKAAPGQLSATEIRK--GLSLMGEIKPKKFAIFGSPISQSRSP 1305

Query:   270 ILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVA 329
              L+N  F  VG    +  L   +     +   S DF G S TIP K   +   DEV   A
Sbjct:  1306 ALHNTLFAQVGLPHNYTRLETTNAQDVQEFIRSPDFGGASVTIPLKLDIMPLLDEVAAEA 1365

Query:   330 KSIGAVNCIIR----RQSDGKLFGYNTDYVGAISAIED-GLRG 367
             + IGAVN II     + +  +L G NTD+ G I ++   G+ G
Sbjct:  1366 EIIGAVNTIIPVSTGKNTPSRLVGRNTDWQGMILSLRKAGVYG 1408

GO:0070403 "NAD+ binding" evidence=IPI

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IDA;RCA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=RCA;IDA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=RCA;IDA

GO:0004765 "shikimate kinase activity" evidence=RCA;IDA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=RCA;IDA

GO:0009423 "chorismate biosynthetic process" evidence=IDA

GO:0003856 "3-dehydroquinate synthase activity" evidence=RCA

GO:0005737 "cytoplasm" evidence=IEA

CGD|CAL0004346 ARO1 [Candida albicans (taxid:5476)]

 Score = 279 (103.3 bits), Expect = 1.6e-21, P = 1.6e-21
 Identities = 105/380 (27%), Positives = 183/380 (48%)

Query:    13 KLVSGGMRKNPTL---ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR--- 66
             KL++G  R    +     V +    ++++V D+ ++   GAD VE+R+D  K+ +     
Sbjct:  1029 KLITGAERPVVPVGRSAAVVLTSPDLNEVVRDL-ESITIGADAVELRVDLFKDTSAEFVA 1087

Query:    67 ENIKTLIKESPVPTLFTYRPIWEGGQYDGDEN--ERVDVLRLAMELGADYIDVELQVARE 124
               I  + K + +P ++T R + +GG++  DEN  E   +L L + LG  Y+D++L    E
Sbjct:  1088 AQIAVIRKHADLPIIYTVRTMSQGGKFP-DENVDELKSLLLLGIRLGVAYVDLQLTAPNE 1146

Query:   125 FNDSIRGKKPEKCKVIVSSH--NYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDV 182
               + I  KK    +VI +    N +   +  +  N   +  +  ADIV+    A  I D 
Sbjct:  1147 LIEEISSKKGFT-RVIGTYQDINGELKWNNVEWKNKYNQGVSMNADIVRLVGKANSIQDN 1205

Query:   183 ARVFQITVHSQV-PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQ-PTIKDL 240
               +      + + P+I   +G +G +S++L     G  TF  + + ++    +  TI +L
Sbjct:  1206 LDLENFKKQNTLKPLIAFNLGSQGKLSQVL----NG--TFTPISHKLLPNDEEFLTIGEL 1259

Query:   241 LDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTY 300
                Y F   G   K F +IG P+ HS+SP L+N  +K++     F      D+   +   
Sbjct:  1260 NQTY-FDIGGFTAKKFWVIGSPIEHSRSPNLHNAGYKALNLPYQFGRFEATDVDVVYDNL 1318

Query:   301 SSN-DFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AI 358
              +  DF G + T+P K   +K   ++   A++IGAVN +I    +G  FG NTD+VG + 
Sbjct:  1319 INKPDFGGLAITMPLKLDIMKFATKLSDAAETIGAVNTLI--PIEGGYFGDNTDWVGISN 1376

Query:   359 SAIEDGLRGRLNVSGGVSSA 378
             S I  G+  + + +G V  A
Sbjct:  1377 SFIRAGVPPKSSSNGLVVGA 1396

GO:0005829 "cytosol" evidence=IEA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA

GO:0004765 "shikimate kinase activity" evidence=IEA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA

TIGR_CMR|DET_0466 DET_0466 "3-dehydroquinate dehydratase, type I" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 248 (92.4 bits), Expect = 7.5e-21, P = 7.5e-21
 Identities = 74/227 (32%), Positives = 107/227 (47%)

Query:    21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT 80
             KNP + CV      + ++        + GA   E+RLD L   + RE    L K    P 
Sbjct:     2 KNPPVCCV------ITRLPEAESLKKSEGAAFYELRLD-LLGESWREAAAMLDK----PF 50

Query:    81 LFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
             + T R   EGG + G E ER+ +L  A   GA  +D+E           R +   KC  +
Sbjct:    51 MATCRRSAEGGSFSGSEEERIGLLEKAAAAGAFMLDIEYSTPHLGEVLKRLRTQSKC--L 108

Query:   141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVP---II 197
             VS HN+  TPS  DL  LV  +    ADI K  TTA  I D  ++  +    ++P   I+
Sbjct:   109 VSHHNFADTPSAGDLKTLVKDMLNYPADIYKVITTATSINDNIKLLNLI--KEIPDKKIV 166

Query:   198 GLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY 244
                MG  G++SRILC   G   T+ +L +   SA GQ T+  ++++Y
Sbjct:   167 AFAMGNLGILSRILCPLAGSPFTYASLNDSNQSASGQMTLAQMIEIY 213

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|BA_4561 BA_4561 "shikimate 5-dehydrogenase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 223 (83.6 bits), Expect = 2.6e-17, P = 2.6e-17
 Identities = 42/111 (37%), Positives = 72/111 (64%)

Query:   254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 311
             +++G+IG P+GHS SP+++N+AF+ +  +  +   LV +  + +  +   +   +GF+ T
Sbjct:     3 QLYGVIGNPIGHSLSPVMHNDAFEHLKMDAHYHAFLVKEEVLGEAVRGLKALGISGFNVT 62

Query:   312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
              PHK A +   DE+D +AK IGAVN ++ +  DGKL GYNTD +G + A++
Sbjct:    63 TPHKVAIMDYLDEIDPLAKQIGAVNTVVHK--DGKLIGYNTDGIGFVRALQ 111

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|CHY_0623 CHY_0623 "shikimate 5-dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 210 (79.0 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 54/171 (31%), Positives = 90/171 (52%)

Query:   252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFS 309
             +TK+ GIIG P+ H+ SP ++NEAFK++  N +++ L V  + + +      + +F G +
Sbjct:     6 ETKLTGIIGYPLKHTLSPQMHNEAFKALNLNFLYLPLEVAEESLPQAIYGLKAFNFRGIN 65

Query:   310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRL 369
              TIP+KE      DEV T AK+IGAVN I+  +  G+L GYNTD  G + ++++      
Sbjct:    66 VTIPYKEKVFPFLDEVATEAKTIGAVNTIVHDR--GRLIGYNTDAPGFLLSLKEN----- 118

Query:   370 NVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYENLQRL 420
             +V       + GK  +++                   ++IANRT +  + L
Sbjct:   119 DVE------VTGKKVLLLGAGGAARAVAYALLTAGAELIIANRTIDKAKEL 163

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

UNIPROTKB|P05194 aroD "AroD" [Escherichia coli K-12 (taxid:83333)]

 Score = 209 (78.6 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 63/227 (27%), Positives = 113/227 (49%)

Query:    26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKT---LIKES-PV-PT 80
             I V +M + +  +  +      +  D++E R+D   + +  E++     +++E+ P  P 
Sbjct:    18 IIVSLMAKDIASVKSEALAYREADFDILEWRVDHYADLSNVESVMAAAKILRETMPEKPL 77

Query:    81 LFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVARE-FNDSIRGKKPEKCK 138
             LFT+R   EGG+        + + R A++ G  D ID+EL    +   +++        K
Sbjct:    78 LFTFRSAKEGGEQAISTEAYIALNRAAIDSGLVDMIDLELFTGDDQVKETVAYAHAHDVK 137

Query:   139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV---- 194
             V++S+H++  TP  E++   + ++Q+  ADI K A      +DV  +   T+  Q     
Sbjct:   138 VVMSNHDFHKTPEAEEIIARLRKMQSFDADIPKIALMPQSTSDVLTLLAATLEMQEQYAD 197

Query:   195 -PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
              PII + M + G+ISR+    FG   TFG ++    SAPGQ ++ DL
Sbjct:   198 RPIITMSMAKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVNDL 242

GO:0003824 "catalytic activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA

GO:0009423 "chorismate biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SQT8	DHQSD_ARATH	1, ., 1, ., 1, ., 2, 5	0.7341	1.0	0.6965	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.2.1.10	0.946
3rd Layer	1.1.1	0.963
3rd Layer	4.2.1	0.963
4th Layer	1.1.1.25	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	DHQD4	dehydroquinate dehydratase/ shikimate dehydrogenase (EC-1.1.1.25) (518 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	DHQS6	SubName- Full=Putative uncharacterized protein; (375 aa)	•	•	•			•	•		0.971
	SK2	shikimate kinase (EC-2.7.1.71) (286 aa)			•			•	•		0.932
	SK3	shikimate kinase (EC-2.7.1.71) (294 aa)			•			•	•		0.931
	SKp	shikimate kinase (EC-2.7.1.71) (223 aa)			•			•			0.927
	SK1	shikimate kinase (EC-2.7.1.71) (286 aa)			•			•	•		0.920
	DHQD5	dehydroquinate dehydratase/ shikimate dehydrogenase (EC-1.1.1.25 4.2.1.10) (504 aa)			•			•		•	0.903
	DHQD3	dehydroquinate dehydratase/ shikimate dehydrogenase (EC-1.1.1.25 4.2.1.10) (518 aa)			•			•		•	0.902
	DHQD1	dehydroquinate dehydratase/ shikimate dehydrogenase (EC-1.1.1.25 4.2.1.10) (518 aa)			•			•		•	0.902
	DHQD2	dehydroquinate dehydratase/ shikimate dehydrogenase (EC-1.1.1.25) (521 aa)			•			•		•	0.901
	EPSPS	3-phosphoshikimate 1-carboxyvinyltransferase (EC-2.5.1.19) (519 aa)	•	•	•				•		0.751

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	420
PLN02520	529	PLN02520, PLN02520, bifunctional 3-dehydroquinate	0.0
pfam01487	222	pfam01487, DHquinase_I, Type I 3-dehydroquinase	3e-84
TIGR01093	228	TIGR01093, aroD, 3-dehydroquinate dehydratase, typ	5e-73
cd00502	225	cd00502, DHQase_I, Type I 3-dehydroquinase, (3-deh	4e-66
COG0710	231	COG0710, AroD, 3-dehydroquinate dehydratase [Amino	3e-53
COG0169	283	COG0169, AroE, Shikimate 5-dehydrogenase [Amino ac	2e-49
PRK00258	278	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewe	3e-48
PRK09310	477	PRK09310, aroDE, bifunctional 3-dehydroquinate deh	9e-42
PRK02412	253	PRK02412, aroD, 3-dehydroquinate dehydratase; Prov	3e-41
TIGR00507	270	TIGR00507, aroE, shikimate 5-dehydrogenase	7e-36
pfam08501	83	pfam08501, Shikimate_dh_N, Shikimate dehydrogenase	8e-29
PRK13575	238	PRK13575, PRK13575, 3-dehydroquinate dehydratase;	1e-25
PRK12548	289	PRK12548, PRK12548, shikimate 5-dehydrogenase; Pro	2e-22
TIGR01809	282	TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase	3e-21
PRK12749	288	PRK12749, PRK12749, quinate/shikimate dehydrogenas	1e-13
PRK12549	284	PRK12549, PRK12549, shikimate 5-dehydrogenase; Rev	1e-13
cd01065	155	cd01065, NAD_bind_Shikimate_DH, NAD(P) binding dom	9e-10
PRK14027	283	PRK14027, PRK14027, quinate/shikimate dehydrogenas	4e-09
pfam01488	133	pfam01488, Shikimate_DH, Shikimate / quinate 5-deh	1e-08
PRK12550	272	PRK12550, PRK12550, shikimate 5-dehydrogenase; Rev	3e-07
PRK13576	216	PRK13576, PRK13576, 3-dehydroquinate dehydratase;	1e-06
PRK00045	423	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	4e-04
PRK07890	258	PRK07890, PRK07890, short chain dehydrogenase; Pro	0.001
COG0373	414	COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme m	0.003
cd00401	402	cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, N	0.003

>gnl|CDD|178135 PLN02520, PLN02520, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

 Score =  798 bits (2064), Expect = 0.0
 Identities = 336/418 (80%), Positives = 367/418 (87%), Gaps = 1/418 (0%)

Query: 3   SPNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN 62
                +AS     SGG+R+NPTLICVPIM +SVDKM+++M KA   GADLVEIRLD LKN
Sbjct: 2   VSTASLASDDLQGSGGVRRNPTLICVPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKN 61

Query: 63  FNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVA 122
           FNPRE++KTLIK+SP+PTL TYRP WEGGQY+GDEN+R D LRLAMELGADY+DVEL+VA
Sbjct: 62  FNPREDLKTLIKQSPLPTLVTYRPKWEGGQYEGDENKRQDALRLAMELGADYVDVELKVA 121

Query: 123 REFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDV 182
            EF +SI GKKPEKCKVIVSSHNY+ TPSVE+L NLVARIQA+GADIVK ATTALDITDV
Sbjct: 122 HEFINSISGKKPEKCKVIVSSHNYENTPSVEELGNLVARIQATGADIVKIATTALDITDV 181

Query: 183 ARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLD 242
           AR+FQITVHSQVP IGLVMGERGLISRILC KFGG+LTFGTLE G VSAPGQPTIKDLLD
Sbjct: 182 ARMFQITVHSQVPTIGLVMGERGLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIKDLLD 241

Query: 243 LYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSS 302
           LYNFRQ+GPDTKV+GIIGKPVGHSKSPIL+NEAFKSVGFNGV+VHLLVDD+AKF QTYSS
Sbjct: 242 LYNFRQIGPDTKVYGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSS 301

Query: 303 NDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
            DFAGFSCTIPHKE A+KCCDEVD +AKSIGA+N IIRR SDGKL GYNTDY+GAISAIE
Sbjct: 302 PDFAGFSCTIPHKEDALKCCDEVDPIAKSIGAINTIIRRPSDGKLVGYNTDYIGAISAIE 361

Query: 363 DGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420
           DGLR     S    S LAGKLFVVIGAGGAGKALAYGAK KGARVVIANRTYE  + L
Sbjct: 362 DGLRA-SGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKEL 418

Length = 529

>gnl|CDD|216526 pfam01487, DHquinase_I, Type I 3-dehydroquinase

 Score =  256 bits (656), Expect = 3e-84
 Identities = 87/225 (38%), Positives = 135/225 (60%), Gaps = 9/225 (4%)

Query: 27  CVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTLIKESPVPTLFT 83
           CVP+ G S+++ + ++ +    GAD VE+RLD L++ +     E +  L +++ +P +FT
Sbjct: 1   CVPVTGPSLEEALAELEEL-EEGADAVELRLDLLEDVDAEDVSEQLSALREKTGLPIIFT 59

Query: 84  YRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSS 143
            R   EGG++DG E E +++L+ A+ LG DYID+EL  A +   ++   K    K+I+S 
Sbjct: 60  VRTKSEGGRFDGSEEEYLELLKEALRLGPDYIDIELSSAPDELLAVIIAKKGGTKIILSY 119

Query: 144 HNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ---VPIIGLV 200
           H+++ TPS EDL +L   +Q  GADIVK A  A  I DV R+ + T  ++    P+I + 
Sbjct: 120 HDFEGTPSWEDLLSLYEEMQKLGADIVKIAVMANSIEDVLRLLRFTSEAKELDKPLIAIS 179

Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
           MGE G ISRIL   FG  LT+ +L     SAPGQ T+++L +   
Sbjct: 180 MGELGRISRILGPVFGSVLTYASLGK--ASAPGQITLEELREALE 222

Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate giving dehydroshikimate. Dehydroquinase functions in the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Type II 3-dehydroquinase catalyzes the trans-dehydration of 3-dehydroshikimate see pfam01220. Length = 222

>gnl|CDD|233268 TIGR01093, aroD, 3-dehydroquinate dehydratase, type I

 Score =  228 bits (582), Expect = 5e-73
 Identities = 84/231 (36%), Positives = 129/231 (55%), Gaps = 14/231 (6%)

Query: 25  LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPVP 79
            I VP+    +++ +    K    GAD+VE+R+D LK+ +   ++  LI++        P
Sbjct: 1   KIFVPLTAPDLEEALATAEKIC-KGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKP 59

Query: 80  TLFTYRPIWEGGQYDGDENERVDVL-RLAMELGADYIDVELQVAREF-NDSIRGKKPEKC 137
            +FT R I EGG++ G+E E ++ L R A   G D++D+EL +  +   + I   K    
Sbjct: 60  LIFTIRTISEGGKFPGNEEEYLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGT 119

Query: 138 KVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ---- 193
           K+I+S H++Q TPS E++   + +  + GADIVK A  A    DV  + +IT        
Sbjct: 120 KIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDEHAD 179

Query: 194 VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY 244
           VP+I + MG+RG ISR+L A FG  LTFG+L     SAPGQ ++ DL +L 
Sbjct: 180 VPLITMSMGDRGKISRVLGAVFGSVLTFGSLGK--ASAPGQISVDDLRELL 228

This model detects 3-dehydroquinate dehydratase, type I, either as a monofunctional protein or as a domain of a larger, multifunctional protein. It is often found fused to shikimate 5-dehydrogenase (EC 1.1.1.25), and sometimes additional domains. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by the model TIGR01088 [Amino acid biosynthesis, Aromatic amino acid family]. Length = 228

>gnl|CDD|188633 cd00502, DHQase_I, Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase)

 Score =  210 bits (536), Expect = 4e-66
 Identities = 81/231 (35%), Positives = 127/231 (54%), Gaps = 15/231 (6%)

Query: 25  LICVPIMGESVDKMVVDMGKA--NASGADLVEIRLDGLKNFNPR---ENIKTLIKESPVP 79
            ICVP+ G     ++ +         GAD VE+R+D L++ +     E +  L + +P+P
Sbjct: 1   KICVPLTG---PDLLEEALSLLELLLGADAVELRVDLLEDPSIDDVAEQLSLLRELTPLP 57

Query: 80  TLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKV 139
            +FT R   EGG ++G E E +++L  A++LG DY+D+EL  A    + I  +K    K+
Sbjct: 58  IIFTVRTKSEGGNFEGSEEEYLELLEEALKLGPDYVDIELDSAL-LEELINSRKKGNTKI 116

Query: 140 IVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITV----HSQVP 195
           I S H++  TPS E+L + + ++ A GADIVK A  A  I D  R+ + T        +P
Sbjct: 117 IGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSIEDNLRLLKFTRQVKNLYDIP 176

Query: 196 IIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246
           +I + MGE G +SRIL   FG  LT+ +L     SAPGQ ++++L    + 
Sbjct: 177 LIAINMGELGKLSRILSPVFGSPLTYASLPE--PSAPGQLSVEELKQALSL 225

Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase). Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism. Length = 225

>gnl|CDD|223782 COG0710, AroD, 3-dehydroquinate dehydratase [Amino acid transport and metabolism]

 Score =  177 bits (450), Expect = 3e-53
 Identities = 75/223 (33%), Positives = 125/223 (56%), Gaps = 9/223 (4%)

Query: 24  TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN-FNPRENIKTLIKESPV-PTL 81
             I VP++G  + ++     K+    AD+VE+R+D L++     E  K L ++ P  P +
Sbjct: 2   PKIIVPVVGLDIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLI 61

Query: 82  FTYRPIWEGGQYDGDENERVDVLR-LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
           FT+R + EGG++ G E E +++L+ LA   G DYID+EL    +    I  K  +K  VI
Sbjct: 62  FTFRTVKEGGEFPGSEEEYIELLKKLAELNGPDYIDIELSSPEDDVKEII-KFAKKHGVI 120

Query: 141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV---PII 197
           VS H+++ TP +E++   + ++++ GADIVK A       DV  + + T   +    P+I
Sbjct: 121 VSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSKEDVLDLLEATREFKEAEKPVI 180

Query: 198 GLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
            + MG+ G ISR+    FG  +T+ +L+    SAPGQ ++ +L
Sbjct: 181 TISMGKTGKISRVAGPVFGSPITYASLDK--PSAPGQISVDEL 221

Length = 231

>gnl|CDD|223247 COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

 Score =  168 bits (429), Expect = 2e-49
 Identities = 66/175 (37%), Positives = 104/175 (59%), Gaps = 13/175 (7%)

Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
           M   TK+FG+IG P+ HS SP ++N AF+++G + V++   V  +D+ +      +  F 
Sbjct: 2   MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFR 61

Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 366
           G + TIP KEAA+   DE+   A+ IGAVN ++R   DGKL GYNTD +G + A+++   
Sbjct: 62  GLNVTIPFKEAALPLLDELSPRARLIGAVNTLVRE-DDGKLRGYNTDGIGFLRALKE--- 117

Query: 367 GRLNVSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYENLQRL 420
                  G+   + GK  +++GAGGA +A+A+  A+A   R+ + NRT E  + L
Sbjct: 118 ------FGLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEEL 166

Length = 283

>gnl|CDD|234703 PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed

 Score =  165 bits (421), Expect = 3e-48
 Identities = 61/171 (35%), Positives = 97/171 (56%), Gaps = 15/171 (8%)

Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSC 310
           T+++ +IG P+ HSKSP+++N AFK +G +GV++ +LV  +D+    + + +    G + 
Sbjct: 5   TRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGRGANV 64

Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLN 370
           T+P KEAA    DE+   A+ IGAVN ++    DG+L G NTD +G + A+E+ L     
Sbjct: 65  TVPFKEAAFALADELSERARLIGAVNTLVLE--DGRLIGDNTDGIGFVRALEERL----- 117

Query: 371 VSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYENLQRL 420
                   L GK  +++GAGGA +A+         A + I NRT E  + L
Sbjct: 118 -----GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEEL 163

Length = 278

>gnl|CDD|137204 PRK09310, aroDE, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

 Score =  153 bits (388), Expect = 9e-42
 Identities = 110/372 (29%), Positives = 175/372 (47%), Gaps = 28/372 (7%)

Query: 51  DLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL 110
           D +E+R+D L + +  E +K LI+ +P+P L T++      Q    +     +  LA +L
Sbjct: 26  DCIELRVDLLLSLSDLE-LKKLIELAPIPIL-TWKKHESCSQAAWIDK----MQSLA-KL 78

Query: 111 GADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIV 170
             +Y+D++    +E    IR   P K K+I+S H    T   ED+  L   + AS AD  
Sbjct: 79  NPNYLDIDKDFPKEALIRIRKLHP-KIKIILSYH----TSEHEDIIQLYNEMLASAADYY 133

Query: 171 KFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVS 230
           K A ++   TD+  +             L MG  G  SRIL         +         
Sbjct: 134 KIAVSSSSSTDLLNIIHQKRSLPENTTVLCMGGMGRPSRILSPLLQNAFNYAAGIGAPPV 193

Query: 231 APGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV 290
           APGQ +++ LL  YN+  +   + ++G+IG PV  S S + +N  F  +  N  ++ L +
Sbjct: 194 APGQLSLEHLL-FYNYANLSAQSPIYGLIGDPVDRSISHLSHNPLFSQLSLNCPYIKLPL 252

Query: 291 D--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLF 348
              ++ KFF T     F G S T+P K A +   D++D   K  G+ N ++ R   GK+ 
Sbjct: 253 TPQELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLDPSVKLCGSCNTLVFRN--GKIE 310

Query: 349 GYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV 408
           GYNTD  G  S ++     + N+       L  +   ++GAGGA KA+A      GA ++
Sbjct: 311 GYNTDGEGLFSLLK-----QKNIP------LNNQHVAIVGAGGAAKAIATTLARAGAELL 359

Query: 409 IANRTYENLQRL 420
           I NRT  + + L
Sbjct: 360 IFNRTKAHAEAL 371

Length = 477

>gnl|CDD|235036 PRK02412, aroD, 3-dehydroquinate dehydratase; Provisional

 Score =  146 bits (370), Expect = 3e-41
 Identities = 67/229 (29%), Positives = 119/229 (51%), Gaps = 14/229 (6%)

Query: 24  TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPV 78
             I VPIMG+++++++ +    +   AD++E R D L+  +  E++           +  
Sbjct: 16  PKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGK 75

Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA-DYIDVELQVARE-FNDSIRGKKPEK 136
           P LFT+R   EGG+    + E + +++  ++ G  DYIDVEL   ++   + +       
Sbjct: 76  PLLFTFRTAKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHG 135

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVH----- 191
            KV++S H+++ TP  E++   + ++++ GADIVK A       DV  +   T       
Sbjct: 136 VKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATREMKELY 195

Query: 192 SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
           +  P+I + MG+ G ISR+    FG   TF +L+    SAPGQ +++DL
Sbjct: 196 ADQPLITMSMGKLGRISRLAGEVFGSSWTFASLDK--ASAPGQISVEDL 242

Length = 253

>gnl|CDD|161904 TIGR00507, aroE, shikimate 5-dehydrogenase

 Score =  132 bits (334), Expect = 7e-36
 Identities = 65/169 (38%), Positives = 93/169 (55%), Gaps = 15/169 (8%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCT 311
           K++G+IG P+ HSKSP+++N  FK +G  G ++  LV  DD+      + +  F G + T
Sbjct: 1   KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVT 60

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
            P KE A +  DE+D  AK  GAVN ++    DGKL GYNTD +G +S +E  +  R N 
Sbjct: 61  SPFKERAFQFLDEIDGRAKLAGAVNTLVLE--DGKLVGYNTDGIGLVSDLEQLIPLRPN- 117

Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420
                     +  ++IGAGGA KA+A         V+IANRT    + L
Sbjct: 118 ----------QNVLIIGAGGAAKAVALELLKADCNVIIANRTVSKAEEL 156

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain [Amino acid biosynthesis, Aromatic amino acid family]. Length = 270

>gnl|CDD|149523 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate binding domain

 Score =  107 bits (270), Expect = 8e-29
 Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 2/83 (2%)

Query: 258 IIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHK 315
           +IG P+ HS SP+++N AFK++G NGV+V   V  D++ +F +   +  F G + TIPHK
Sbjct: 1   LIGNPISHSLSPLIHNAAFKALGLNGVYVAFEVPPDNLPEFVEGLRALGFRGLNVTIPHK 60

Query: 316 EAAVKCCDEVDTVAKSIGAVNCI 338
           EAA+   DE+   AK IGAVN I
Sbjct: 61  EAAIPLLDELSPEAKRIGAVNTI 83

This domain is the substrate binding domain of shikimate dehydrogenase. Length = 83

>gnl|CDD|184156 PRK13575, PRK13575, 3-dehydroquinate dehydratase; Provisional

 Score =  103 bits (259), Expect = 1e-25
 Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 18/228 (7%)

Query: 33  ESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTL-IKESPVPTLFTYRPIW 88
            S+++ ++          D++E+R+D  +N       E I  L + +     L TYR   
Sbjct: 14  LSIEETLIQKINHRIDAIDIIELRIDQWENVTVDQLAEMITKLKVLQDSFKLLVTYRTKL 73

Query: 89  EGGQYDGDENERVDVLR-LAMELGADYIDVELQVAREFN---DSIRGKKPEKCKVIVSSH 144
           +GG      +  +++L  LA   G D ID+E Q   +       I   +    +V++S H
Sbjct: 74  QGGYGQFTNDLYLNLLSDLANINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHH 133

Query: 145 NYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQI------TVHSQVPIIG 198
           N++ TP +++L  +  ++Q    + VK A    +  DV  + Q       T+  +V  +G
Sbjct: 134 NFESTPPLDELKFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKV--VG 191

Query: 199 LVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246
           + M + GLISR     FGG L++G +  G   APGQ  + DL      
Sbjct: 192 ISMSKLGLISRTAQGVFGGALSYGCI--GEPQAPGQIHVTDLKAQVTL 237

Length = 238

>gnl|CDD|183585 PRK12548, PRK12548, shikimate 5-dehydrogenase; Provisional

 Score = 96.0 bits (239), Expect = 2e-22
 Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 16/163 (9%)

Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFV--HLLVDDIAKFFQTYSSNDFAGFSC 310
           T + G+IG PVGHS SP +YN +F+  G +  ++   + VD +    +   + +  G + 
Sbjct: 9   TGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMRGANV 68

Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLN 370
           T+P K  A K  DE+   A+ IGAVN I+    DGKL G+ TD +G +  + +       
Sbjct: 69  TMPCKSEAAKYMDELSPAARIIGAVNTIV--NDDGKLTGHITDGLGFVRNLRE------- 119

Query: 371 VSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANR 412
              GV   + GK   VIGAGGA  A+       GA+ + I N 
Sbjct: 120 --HGVD--VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNI 158

Length = 289

>gnl|CDD|233580 TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase, fungal AROM-type

 Score = 92.7 bits (230), Expect = 3e-21
 Identities = 56/170 (32%), Positives = 79/170 (46%), Gaps = 13/170 (7%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSN--DFAGFSCT 311
           K   IIGKP+ HS+SP L+N  ++ +G              +  +  S     F G S T
Sbjct: 6   KKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGFGPQFGGASVT 65

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
           IP K A ++  DE    A  IG+VN ++R Q +G   G NTD+ G   A+          
Sbjct: 66  IPLKFAILRFADEHTDRASLIGSVNTLLRTQ-NGIWKGDNTDWDGIAGAL---------A 115

Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKG-ARVVIANRTYENLQRL 420
           + G    LAG   +VIGAGG  +A  Y   + G   + + NR  + L RL
Sbjct: 116 NIGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRL 165

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway [Amino acid biosynthesis, Aromatic amino acid family]. Length = 282

>gnl|CDD|183721 PRK12749, PRK12749, quinate/shikimate dehydrogenase; Reviewed

 Score = 70.8 bits (173), Expect = 1e-13
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 15/157 (9%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 311
           ++ G++  P+ HS SP + N+A +  G    ++   VD+       +   +    G   +
Sbjct: 8   ELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVS 67

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
           +P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++        
Sbjct: 68  MPNKQLACEYVDELTPAAKLVGAINTIV--NDDGYLRGYNTDGTGHIRAIKE-------- 117

Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV 408
           SG     + GK  V++GAGGA  A+      +G + +
Sbjct: 118 SG---FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEI 151

Length = 288

>gnl|CDD|183586 PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed

 Score = 70.3 bits (173), Expect = 1e-13
 Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 28/161 (17%)

Query: 257 GIIGKPVGHSKSPILYNEAFKSVGFNGVF-------VHLLVDDIAKFFQTYSSNDFAGFS 309
           G+IG  +  S SP ++     + G   V+       + L  D + +         FAG +
Sbjct: 9   GLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLN 68

Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGL---- 365
            T P K+A +   DE+   A+++GAVN ++ R  DG+  G+NTD+ G   +   GL    
Sbjct: 69  ITHPCKQAVIPHLDELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRGLPDAS 126

Query: 366 RGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGAR 406
             R+               V +GAGGAG A+A+     G  
Sbjct: 127 LERV---------------VQLGAGGAGAAVAHALLTLGVE 152

Length = 284

>gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of Shikimate dehydrogenase

 Score = 56.5 bits (137), Expect = 9e-10
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 12/70 (17%)

Query: 352 TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIA 410
           TD +G + A+E+               L GK  +++GAGGA +A+AY     GA ++VI 
Sbjct: 1   TDGLGFVRALEEAGIE-----------LKGKKVLILGAGGAARAVAYALAELGAAKIVIV 49

Query: 411 NRTYENLQRL 420
           NRT E  + L
Sbjct: 50  NRTLEKAKAL 59

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DHs, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 155

>gnl|CDD|172521 PRK14027, PRK14027, quinate/shikimate dehydrogenase; Provisional

 Score = 57.0 bits (137), Expect = 4e-09
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 19/162 (11%)

Query: 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVF--VHLLVD-----DIAKFFQTYSSND 304
           D+ + G+IG+ +  S++P ++     + G   V+  +  L       D+           
Sbjct: 3   DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62

Query: 305 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG 364
           F G + T P+K+A +   DEV   A  +GAVN ++   + G   G+NTD  G    +E+G
Sbjct: 63  FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVV-IDATGHTTGHNTDVSGFGRGMEEG 121

Query: 365 LRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGAR 406
           L      S            V +GAGG G A+AY     G +
Sbjct: 122 LPNAKLDS-----------VVQVGAGGVGNAVAYALVTHGVQ 152

Length = 283

>gnl|CDD|216527 pfam01488, Shikimate_DH, Shikimate / quinate 5-dehydrogenase

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYENLQRL 420
           L GK  ++IGAG   +  A    +KGA+ + IANRT E  + L
Sbjct: 10  LKGKKVLLIGAGEMARLAAKHLLSKGAKKITIANRTLEKAKEL 52

This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyzes the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyzes the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate. Length = 133

>gnl|CDD|183587 PRK12550, PRK12550, shikimate 5-dehydrogenase; Reviewed

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 25/112 (22%)

Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED--- 363
           G + ++P KEA +   DE+D  A++I +VN I+   +DG L  YNTDY+     +     
Sbjct: 62  GCAVSMPFKEAVIPLVDELDPSAQAIESVNTIV--NTDGHLKAYNTDYIAIAKLLASYQV 119

Query: 364 ------GLRGRLNVSGGVSSALAGKL--------FVVIGAGGAGKALA--YG 399
                  LRG    SGG++ A+A  L         +V      GKALA  YG
Sbjct: 120 PPDLVVALRG----SGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYG 167

Length = 272

>gnl|CDD|237433 PRK13576, PRK13576, 3-dehydroquinate dehydratase; Provisional

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 11/133 (8%)

Query: 46  NASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR 105
           N   ADL+E+RLD LK+      I+ L K      + T R   EGG  + D+  ++ +L+
Sbjct: 22  NFLDADLIELRLDYLKDR-EVSVIEFLDKYKD-KLIVTLRDKAEGGINELDDELKISLLK 79

Query: 106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQAS 165
              +    Y DVE    +++N     K       IVS H + Y P+ E++  +V++    
Sbjct: 80  ELYDKQFLY-DVEASFLQKYNVPYDNK-------IVSIHYFDYLPTSEEVKEIVSKFYEK 131

Query: 166 GADIVKFATTALD 178
            A  VK A   L 
Sbjct: 132 -AFSVKIAVLGLK 143

Length = 216

>gnl|CDD|234592 PRK00045, hemA, glutamyl-tRNA reductase; Reviewed

 Score = 42.1 bits (100), Expect = 4e-04
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 14/63 (22%)

Query: 372 SGGVSSA-----LAGKLF--------VVIGAGGAGKALAYGAKAKGAR-VVIANRTYENL 417
           +G VS A     LA ++F        +VIGAG  G+ +A     KG R + +ANRT E  
Sbjct: 160 AGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERA 219

Query: 418 QRL 420
           + L
Sbjct: 220 EEL 222

Length = 423

>gnl|CDD|181159 PRK07890, PRK07890, short chain dehydrogenase; Provisional

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           L GK+ VV G G G G+ LA  A   GA VV+A RT E L  +
Sbjct: 3   LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEV 45

Length = 258

>gnl|CDD|223450 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism]

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAGGAG-KALAYGAKAKGARVVIANRTYENLQRL 420
           L  K  +VIGAG  G     + A+    ++ IANRT E  + L
Sbjct: 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEEL 218

Length = 414

>gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains

 Score = 39.0 bits (92), Expect = 0.003
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
           +AGK+ VV G G  GK  A  A+  GARV++
Sbjct: 193 IAGKVVVVAGYGWVGKGCAMRARGLGARVIV 223

S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+. Length = 402

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	420
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	100.0
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	100.0
PRK02412	253	aroD 3-dehydroquinate dehydratase; Provisional	100.0
COG0710	231	AroD 3-dehydroquinate dehydratase [Amino acid tran	100.0
TIGR01093	228	aroD 3-dehydroquinate dehydratase, type I. Type II	100.0
PF01487	224	DHquinase_I: Type I 3-dehydroquinase; InterPro: IP	100.0
cd00502	225	DHQase_I Type I 3-dehydroquinase, (3-dehydroquinat	100.0
PRK13575	238	3-dehydroquinate dehydratase; Provisional	100.0
PRK13576	216	3-dehydroquinate dehydratase; Provisional	100.0
PRK01261	229	aroD 3-dehydroquinate dehydratase; Provisional	100.0
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	100.0
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	100.0
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	100.0
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	100.0
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	100.0
PRK12548	289	shikimate 5-dehydrogenase; Provisional	100.0
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	100.0
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	100.0
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	100.0
KOG0692	595	consensus Pentafunctional AROM protein [Amino acid	99.96
PF08501	83	Shikimate_dh_N: Shikimate dehydrogenase substrate	99.95
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.79
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.81
PRK08291	330	ectoine utilization protein EutC; Validated	98.61
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	98.49
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.38
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.16
PRK13940	414	glutamyl-tRNA reductase; Provisional	98.13
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	98.03
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.91
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.51
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.36
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.25
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.2
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.14
PLN00203	519	glutamyl-tRNA reductase	97.09
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.08
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.03
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.79
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.78
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.68
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.64
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	96.4
PRK06141	314	ornithine cyclodeaminase; Validated	96.31
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.29
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.23
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.22
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.19
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	96.14
PRK08328	231	hypothetical protein; Provisional	96.13
PRK07340	304	ornithine cyclodeaminase; Validated	96.09
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	96.04
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	95.95
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.94
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	95.88
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	95.84
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.81
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.73
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	95.73
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.72
PRK08618	325	ornithine cyclodeaminase; Validated	95.71
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.63
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.6
PRK05866	293	short chain dehydrogenase; Provisional	95.52
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.52
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.51
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.49
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	95.45
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	95.4
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.39
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.38
PRK12331	448	oxaloacetate decarboxylase; Provisional	95.36
PRK14982	340	acyl-ACP reductase; Provisional	95.36
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	95.35
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.35
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.31
PRK12330	499	oxaloacetate decarboxylase; Provisional	95.29
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	95.28
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	95.24
PRK06196	315	oxidoreductase; Provisional	95.23
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.16
PLN02780	320	ketoreductase/ oxidoreductase	95.13
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.1
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	95.08
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.04
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.01
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.94
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	94.9
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	94.87
PRK14041	467	oxaloacetate decarboxylase; Provisional	94.87
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	94.79
PRK11572	248	copper homeostasis protein CutC; Provisional	94.76
PLN02494	477	adenosylhomocysteinase	94.75
PRK08223	287	hypothetical protein; Validated	94.66
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.64
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	94.6
PRK09282	592	pyruvate carboxylase subunit B; Validated	94.59
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.58
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.56
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.52
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	94.5
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.44
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	94.44
KOG1208	314	consensus Dehydrogenases with different specificit	94.44
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.42
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.38
PTZ00075	476	Adenosylhomocysteinase; Provisional	94.3
PRK06153	393	hypothetical protein; Provisional	94.29
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.26
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.22
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	94.14
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	94.06
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.05
PLN03209	576	translocon at the inner envelope of chloroplast su	94.01
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	93.99
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.99
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.97
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.95
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	93.93
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.93
PRK12779	944	putative bifunctional glutamate synthase subunit b	93.9
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.9
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	93.89
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	93.8
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.72
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	93.72
PRK06567	1028	putative bifunctional glutamate synthase subunit b	93.72
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	93.71
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.7
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	93.65
PRK14040	593	oxaloacetate decarboxylase; Provisional	93.61
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	93.59
PRK13243	333	glyoxylate reductase; Reviewed	93.54
PLN02928	347	oxidoreductase family protein	93.53
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.53
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.52
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	93.44
cd08205	367	RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l	93.42
PRK12480	330	D-lactate dehydrogenase; Provisional	93.32
PRK07411	390	hypothetical protein; Validated	93.32
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	93.3
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	93.17
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	93.11
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.1
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	93.08
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.04
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.03
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	93.02
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	93.02
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	93.01
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	92.93
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	92.91
PRK12581	468	oxaloacetate decarboxylase; Provisional	92.82
cd07948	262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	92.8
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.74
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	92.72
PRK06484	520	short chain dehydrogenase; Validated	92.66
PRK12831	464	putative oxidoreductase; Provisional	92.64
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	92.63
PRK14031	444	glutamate dehydrogenase; Provisional	92.57
PRK11613	282	folP dihydropteroate synthase; Provisional	92.53
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	92.51
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	92.47
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	92.46
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	92.44
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	92.4
PRK06701	290	short chain dehydrogenase; Provisional	92.39
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	92.37
PLN02852	491	ferredoxin-NADP+ reductase	92.35
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	92.26
PRK07201	657	short chain dehydrogenase; Provisional	92.26
PRK08324	681	short chain dehydrogenase; Validated	92.25
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.21
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	92.17
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	92.15
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	92.15
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	92.13
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	92.11
TIGR02090	363	LEU1_arch isopropylmalate/citramalate/homocitrate	92.08
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	92.05
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	92.05
PRK07985	294	oxidoreductase; Provisional	92.01
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	91.97
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	91.95
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.93
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	91.91
PRK05855	582	short chain dehydrogenase; Validated	91.86
PRK06128	300	oxidoreductase; Provisional	91.84
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	91.83
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	91.83
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	91.79
PRK12814	652	putative NADPH-dependent glutamate synthase small	91.79
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	91.74
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	91.74
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	91.72
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	91.72
PRK05562	223	precorrin-2 dehydrogenase; Provisional	91.67
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	91.66
PLN02602	350	lactate dehydrogenase	91.58
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	91.56
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	91.56
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	91.54
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	91.54
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	91.52
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	91.51
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	91.5
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	91.43
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	91.43
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	91.33
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	91.23
PRK07226	267	fructose-bisphosphate aldolase; Provisional	91.22
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	91.22
PF00682	237	HMGL-like: HMGL-like of this family is not conserv	91.15
PRK14851	679	hypothetical protein; Provisional	91.11
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	91.08
PTZ00245	287	ubiquitin activating enzyme; Provisional	91.08
PRK06046	326	alanine dehydrogenase; Validated	91.07
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	91.04
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	91.02
PRK00366	360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	90.98
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	90.92
PRK07574	385	formate dehydrogenase; Provisional	90.89
PRK06436	303	glycerate dehydrogenase; Provisional	90.86
PLN02686	367	cinnamoyl-CoA reductase	90.85
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	90.79
PRK04148	134	hypothetical protein; Provisional	90.78
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	90.75
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	90.68
PLN02477	410	glutamate dehydrogenase	90.66
PRK08605	332	D-lactate dehydrogenase; Validated	90.61
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	90.58
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	90.55
PRK07226	267	fructose-bisphosphate aldolase; Provisional	90.48
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	90.44
PLN03139	386	formate dehydrogenase; Provisional	90.42
PRK14042	596	pyruvate carboxylase subunit B; Provisional	90.37
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	90.37
PRK13984	604	putative oxidoreductase; Provisional	90.36
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	90.34
PRK12862	763	malic enzyme; Reviewed	90.32
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	90.31
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	90.15
PRK09496	453	trkA potassium transporter peripheral membrane com	90.1
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	90.1
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	90.08
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	90.01
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	89.94
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	89.82
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	89.81
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	89.79
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.74
PLN02256	304	arogenate dehydrogenase	89.58
PRK06487	317	glycerate dehydrogenase; Provisional	89.51
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	89.45
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	89.42
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	89.34
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	89.3
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	89.28
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	89.22
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	89.2
PLN02463	447	lycopene beta cyclase	89.18
PRK11730	715	fadB multifunctional fatty acid oxidation complex	89.14
PRK06199	379	ornithine cyclodeaminase; Validated	89.12
PRK14852	989	hypothetical protein; Provisional	89.11
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	89.03
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	89.02
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	89.01
TIGR00612	346	ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho	89.01
PF00289	110	CPSase_L_chain: Carbamoyl-phosphate synthase L cha	89.01
COG0821	361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	88.96
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	88.95
PRK13523	337	NADPH dehydrogenase NamA; Provisional	88.94
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	88.93
PLN02985	514	squalene monooxygenase	88.91
PRK00366	360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	88.85
PRK06823	315	ornithine cyclodeaminase; Validated	88.85
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	88.83
PTZ00188	506	adrenodoxin reductase; Provisional	88.81
PLN02572	442	UDP-sulfoquinovose synthase	88.78
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	88.73
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	88.71
PRK08132	547	FAD-dependent oxidoreductase; Provisional	88.7
PRK06932	314	glycerate dehydrogenase; Provisional	88.59
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	88.58
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.55
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	88.54
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	88.5
PRK14030	445	glutamate dehydrogenase; Provisional	88.43
TIGR00190	423	thiC thiamine biosynthesis protein ThiC. The thiC	88.4
PRK06407	301	ornithine cyclodeaminase; Provisional	88.37
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	88.34
PLN02740	381	Alcohol dehydrogenase-like	88.19
COG0476	254	ThiF Dinucleotide-utilizing enzymes involved in mo	88.15
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	88.1
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	88.0
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	88.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	87.94
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	87.93
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	87.92
PRK13352	431	thiamine biosynthesis protein ThiC; Provisional	87.91
PRK12999	1146	pyruvate carboxylase; Reviewed	87.9
cd07941	273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	87.89
PRK07589	346	ornithine cyclodeaminase; Validated	87.81
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	87.67
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	87.6
cd03316	357	MR_like Mandelate racemase (MR)-like subfamily of	87.55
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	87.55
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	87.51
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	87.49
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	87.46
PRK11858	378	aksA trans-homoaconitate synthase; Reviewed	87.42
cd08210	364	RLP_RrRLP Ribulose bisphosphate carboxylase like p	87.41
PF04551	359	GcpE: GcpE protein; InterPro: IPR004588 This prote	87.4
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	87.39
TIGR01496	257	DHPS dihydropteroate synthase. This model represen	87.38
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	87.31
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	87.27
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	87.22
cd03319	316	L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat	87.21
PRK09414	445	glutamate dehydrogenase; Provisional	87.17
TIGR01496	257	DHPS dihydropteroate synthase. This model represen	87.08
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	86.99
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	86.74
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	86.68
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	86.68
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	86.68
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	86.66
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	86.57
PLN02712	667	arogenate dehydrogenase	86.5
PF00809	210	Pterin_bind: Pterin binding enzyme This Prosite en	86.45
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	86.42
PTZ00367	567	squalene epoxidase; Provisional	86.33
PRK09284	607	thiamine biosynthesis protein ThiC; Provisional	86.32
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	86.31
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	86.31
PLN02444	642	HMP-P synthase	86.24
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	86.16
PLN02306	386	hydroxypyruvate reductase	86.11
cd00739	257	DHPS DHPS subgroup of Pterin binding enzymes. DHPS	86.1
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	86.1
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	86.06
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	85.98
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	85.96
PLN02334	229	ribulose-phosphate 3-epimerase	85.88
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	85.74
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	85.66
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	85.62
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	85.6
cd07940	268	DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-	85.51
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	85.5
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	85.5
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	85.43
PRK08294	634	phenol 2-monooxygenase; Provisional	85.42
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	85.42
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	85.41
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	85.33
TIGR00612	346	ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho	85.28
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	85.21
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	85.19
PRK02227	238	hypothetical protein; Provisional	85.15
PRK13977	576	myosin-cross-reactive antigen; Provisional	85.1
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	85.07
COG0281	432	SfcA Malic enzyme [Energy production and conversio	85.06
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	85.03
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	85.02
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	84.95
KOG0409	327	consensus Predicted dehydrogenase [General functio	84.73
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	84.61
cd07943	263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	84.58
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	84.51
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	84.46
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	84.44
PRK10669	558	putative cation:proton antiport protein; Provision	84.42
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	84.4
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	84.39
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	84.38
PLN02586	360	probable cinnamyl alcohol dehydrogenase	84.36
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	84.35
PLN02342	348	ornithine carbamoyltransferase	84.21
PLN02827	378	Alcohol dehydrogenase-like	84.15
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	84.06
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	84.06
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	84.0
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	83.99
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	83.96
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	83.79
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	83.76
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	83.75
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	83.69
PRK12831	464	putative oxidoreductase; Provisional	83.68
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	83.67
COG0821	361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	83.63
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	83.61
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	83.61
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	83.59
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	83.54
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	83.5
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	83.48
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	83.44
PLN02697	529	lycopene epsilon cyclase	83.3
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	83.26
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	83.23
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	83.2
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	83.18
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	83.17
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	83.12
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	83.11
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	83.03
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	82.94
TIGR03326	412	rubisco_III ribulose bisphosphate carboxylase, typ	82.93
PLN02661	357	Putative thiazole synthesis	82.86
cd08207	406	RLP_NonPhot Ribulose bisphosphate carboxylase like	82.86
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	82.81
PRK04165	450	acetyl-CoA decarbonylase/synthase complex subunit	82.68
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	82.66
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	82.57
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	82.55
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	82.54
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	82.48
KOG2015	422	consensus NEDD8-activating complex, catalytic comp	82.42
PF01964	420	ThiC: ThiC family; InterPro: IPR002817 ThiC is fou	82.41
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	82.32
PTZ00058	561	glutathione reductase; Provisional	82.28
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	82.18
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	82.1
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	82.1
PRK13748	561	putative mercuric reductase; Provisional	82.01
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	81.99
PLN02695	370	GDP-D-mannose-3',5'-epimerase	81.97
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	81.96
PLN02514	357	cinnamyl-alcohol dehydrogenase	81.78
PLN02487	569	zeta-carotene desaturase	81.77
PLN02712	667	arogenate dehydrogenase	81.72
PRK12858	340	tagatose 1,6-diphosphate aldolase; Reviewed	81.68
PRK04208	468	rbcL ribulose bisophosphate carboxylase; Reviewed	81.6
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	81.59
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	81.52
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	81.51
PLN02464	627	glycerol-3-phosphate dehydrogenase	81.41
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	81.4
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	81.31
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	81.06
cd07938	274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	81.02
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	80.85
PRK08227	264	autoinducer 2 aldolase; Validated	80.81
PLN00112	444	malate dehydrogenase (NADP); Provisional	80.8
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	80.73
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	80.53
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	80.45
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	80.44
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	80.4
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	80.39
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	80.33
cd07939	259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	80.12

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=100.00  E-value=3.6e-101  Score=809.76  Aligned_cols=411  Identities=82%  Similarity=1.248  Sum_probs=374.7

Q ss_pred             cccccccccCCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCC
Q 014691            9 ASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIW   88 (420)
Q Consensus         9 ~~~~~~~~~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~   88 (420)
                      ||.---|||+|++++|+|||||++++.+|++.+++++...++|+||||+|+|.+..+.+++..+++..++|+|||+|+++
T Consensus         8 ~~~~~~~~~~~~~~~~~icv~i~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~~~~~plI~T~R~~~   87 (529)
T PLN02520          8 ASDDLQGSGGVRRNPTLICVPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIKQSPLPTLVTYRPKW   87 (529)
T ss_pred             hhhhhhcccccccCCCEEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHhcCCCcEEEEeccHH
Confidence            45555689999999999999999999999999999887789999999999998766556677777777899999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCC
Q 014691           89 EGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGAD  168 (420)
Q Consensus        89 eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaD  168 (420)
                      |||.|++++++|+++|+.+++.++||||||+...++..+.+...+..+++||+|||||++||+.+|+.+++++|.++|||
T Consensus        88 eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~~vI~S~H~f~~tP~~~el~~~~~~~~~~gaD  167 (529)
T PLN02520         88 EGGQYEGDENKRQDALRLAMELGADYVDVELKVAHEFINSISGKKPEKCKVIVSSHNYENTPSVEELGNLVARIQATGAD  167 (529)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHhCCCEEEEEcCCchhHHHHHHhhhhcCCEEEEEecCCCCCCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999888766666556668999999999999999999999999999999999


Q ss_pred             EEEEEeecCCHHHHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhccc
Q 014691          169 IVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQ  248 (420)
Q Consensus       169 ivKia~~~~s~~D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~~  248 (420)
                      |+|||+||++.+|++++++++.+.+.|+|+||||+.|++||+++++|||++||++++.+.++||||+++++++++|++.+
T Consensus       168 i~Kia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~sRi~~~~~GS~lTy~~~~~~~~sAPGQ~~~~~l~~~~~~~~  247 (529)
T PLN02520        168 IVKIATTALDITDVARMFQITVHSQVPTIGLVMGERGLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIKDLLDLYNFRQ  247 (529)
T ss_pred             EEEEecCCCCHHHHHHHHHHHhhcCCCEEEEecCCCCchheecccccCCceeeeecCcccccCCCCCCHHHHHHHhhhhc
Confidence            99999999999999999998877789999999999999999999999999999999865579999999999999999999


Q ss_pred             cCCCceEEeeeccCccccccHHHHHHHHHHcCCCceeeccccccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHH
Q 014691          249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTV  328 (420)
Q Consensus       249 ~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~  328 (420)
                      ++++|++|||+|+||+||+||.|||++|+++|+|+.|.++++++++++++.++.++|.|+|||||||+++++++|++|+.
T Consensus       248 ~~~~t~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~~~~~  327 (529)
T PLN02520        248 IGPDTKVYGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSSPDFAGFSCTIPHKEDALKCCDEVDPI  327 (529)
T ss_pred             ccCCceEEEEEcCCcccccCHHHHHHHHHHCCCCcEEEEeehhhHHHHHHHHhhCCCCEEEECcCCHHHHHHHhccCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEE
Q 014691          329 AKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV  408 (420)
Q Consensus       329 A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~  408 (420)
                      |+.+||||||++++++|+|+||||||.||+.+|++.+...+. .+..+.++++|+++|+|+||+|||++++|++.|++|+
T Consensus       328 A~~iGAVNTvv~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~-~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~  406 (529)
T PLN02520        328 AKSIGAINTIIRRPSDGKLVGYNTDYIGAISAIEDGLRASGS-SPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVV  406 (529)
T ss_pred             HHHhCCceEEEEeCCCCEEEEEcccHHHHHHHHHhhhccccc-ccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE
Confidence            999999999998622799999999999999999864311000 0001245788999999999999999999999999999


Q ss_pred             EEeCChhhhhcC
Q 014691          409 IANRTYENLQRL  420 (420)
Q Consensus       409 v~nR~~~ka~~L  420 (420)
                      ++||+.+++++|
T Consensus       407 i~nR~~e~a~~l  418 (529)
T PLN02520        407 IANRTYERAKEL  418 (529)
T ss_pred             EEcCCHHHHHHH
Confidence            999999988753

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=100.00  E-value=9.6e-90  Score=715.49  Aligned_cols=368  Identities=29%  Similarity=0.447  Sum_probs=335.4

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (420)
                      ||||||++++.+|++++++.+. .++|+||||+|+|.+..+. .++.+++..+.|++ |+|+++     ++++++|+++|
T Consensus         1 ~icv~i~~~~~~e~~~~~~~~~-~~~D~vE~R~D~~~~~~~~-~~~~l~~~~~~pil-T~R~~~-----~~~~~~~~~~l   72 (477)
T PRK09310          1 MLCATISGPSFLEAKQQILRSL-KLVDCIELRVDLLLSLSDL-ELKKLIELAPIPIL-TWKKHE-----SCSQAAWIDKM   72 (477)
T ss_pred             CEEEEecCCCHHHHHHHHHHhc-ccCCEEEEEehhhccCCHH-HHHHHHhcCCCceE-EeccCc-----cCCHHHHHHHH
Confidence            6999999999999999999876 6799999999999876544 37777664466766 999987     45889999999


Q ss_pred             HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHH
Q 014691          105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVAR  184 (420)
Q Consensus       105 ~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~  184 (420)
                      +.++++++||||||++.+++.++++... ++++|||+|||||+.    +++.+++++|.++||||+|||+||++.+|+++
T Consensus        73 ~~~~~~~~d~vDiEl~~~~~~~~~l~~~-~~~~kvI~S~Hdf~~----~~l~~~~~~~~~~gaDi~Kia~~a~~~~D~l~  147 (477)
T PRK09310         73 QSLAKLNPNYLDIDKDFPKEALIRIRKL-HPKIKIILSYHTSEH----EDIIQLYNEMLASAADYYKIAVSSSSSTDLLN  147 (477)
T ss_pred             HHHHHhCCCEEEEEecCCHHHHHHHHHh-CCCCEEEEEcCCCCc----chHHHHHHHHHHcCCCEEEEeeCCCCHHHHHH
Confidence            9999999999999999988888777544 459999999999942    68999999999999999999999999999999


Q ss_pred             HHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhccccCCCceEEeeeccCcc
Q 014691          185 VFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVG  264 (420)
Q Consensus       185 ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~~~~~~~~~~~v~G~pv~  264 (420)
                      +++++...+.|+|+|+||+.|++||+++++|||++||+++..++++||||++++++. .|++.+++++|++|||+|+||+
T Consensus       148 ll~~~~~~~~p~i~i~MG~~G~~SRil~~~~gS~~Tfa~~~~~~~~APGQi~~~~l~-~~~~~~~~~~t~~~~liG~pi~  226 (477)
T PRK09310        148 IIHQKRSLPENTTVLCMGGMGRPSRILSPLLQNAFNYAAGIGAPPVAPGQLSLEHLL-FYNYANLSAQSPIYGLIGDPVD  226 (477)
T ss_pred             HHHHHhhCCCCEEEEEeCCCchHHhhcchhhcCccccccccCccccCCCCcCHHHHH-hcchhccCCCceEEEEECCCcc
Confidence            999988888899999999999999999999999999999876545799999999998 5788899888999999999999


Q ss_pred             ccccHHHHHHHHHHcCCCceeeccccc--cHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEec
Q 014691          265 HSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ  342 (420)
Q Consensus       265 hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~  342 (420)
                      ||+||.|||++|+++|+|+.|.+++++  ++.++++.++.++|.|+|||||||++|++|+|++|+.|+.+||||||+++ 
T Consensus       227 hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~~d~~~~~A~~iGAVNTv~~~-  305 (477)
T PRK09310        227 RSISHLSHNPLFSQLSLNCPYIKLPLTPQELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLDPSVKLCGSCNTLVFR-  305 (477)
T ss_pred             cccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHhccCCHHHHHhCcceEEEee-
Confidence            999999999999999999999999884  79999999999999999999999999999999999999999999999987 


Q ss_pred             cCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          343 SDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       343 ~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                       +|+|+||||||.||+.+|++..           .++++++++|+|+||+|++++++|.+.|++|+++||+.+++++
T Consensus       306 -~g~l~G~NTD~~G~~~~l~~~~-----------~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~  370 (477)
T PRK09310        306 -NGKIEGYNTDGEGLFSLLKQKN-----------IPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEA  370 (477)
T ss_pred             -CCEEEEEecCHHHHHHHHHhcC-----------CCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence             8999999999999999997531           4567899999999999999999999999999999999988764

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=4.4e-55  Score=420.93  Aligned_cols=235  Identities=29%  Similarity=0.472  Sum_probs=210.4

Q ss_pred             ccccccCCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhH----HHHHHhhC-CCcEEEEecc
Q 014691           12 SKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN----IKTLIKES-PVPTLFTYRP   86 (420)
Q Consensus        12 ~~~~~~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~----l~~l~~~~-~~PiI~T~R~   86 (420)
                      +|+.+-.++.+.|+|||||.+++.+|++++++++...++|+||||+|+|.+.++.+.    +..+++.. ++|+|||+|+
T Consensus         4 ~~~~~~~~~~~~~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~   83 (253)
T PRK02412          4 VTVKNLVIGEGAPKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRT   83 (253)
T ss_pred             eEEeceEeCCCCcEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence            356778888999999999999999999999998888899999999999987543222    33344433 6899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHH
Q 014691           87 IWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQA  164 (420)
Q Consensus        87 ~~eGG~~~~~~~~~~~ll~~~~~~~-~d~iDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~  164 (420)
                      ++|||.++.++++|+++|+.+++.+ |||||||+..+.+.++++.. .++++++||+|||||++||+.+++.+++++|++
T Consensus        84 ~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~  163 (253)
T PRK02412         84 AKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIVERLRKMES  163 (253)
T ss_pred             hhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999 99999999988887777763 356899999999999999999999999999999


Q ss_pred             cCCCEEEEEeecCCHHHHHHHHHHhcc-----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHh
Q 014691          165 SGADIVKFATTALDITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKD  239 (420)
Q Consensus       165 ~gaDivKia~~~~s~~D~~~ll~~~~~-----~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~  239 (420)
                      +||||+|+|+||++.+|++++++++.+     .+.|+|+|+||+.|++||+++++|||++||++++++  +||||+++++
T Consensus       164 ~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~G~~SRil~~~~GS~~ty~~~~~~--sAPGQ~~~~e  241 (253)
T PRK02412        164 LGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPLITMSMGKLGRISRLAGEVFGSSWTFASLDKA--SAPGQISVED  241 (253)
T ss_pred             hCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCchHHHcchhhhCCcceecCCCCC--CCCCCCCHHH
Confidence            999999999999999999999998643     468999999999999999999999999999999975  9999999999


Q ss_pred             HHHHHhccc
Q 014691          240 LLDLYNFRQ  248 (420)
Q Consensus       240 l~~~~~~~~  248 (420)
                      |+++|+..+
T Consensus       242 l~~i~~~l~  250 (253)
T PRK02412        242 LRRILEILH  250 (253)
T ss_pred             HHHHHHHhc
Confidence            999998643

>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]

Probab=100.00  E-value=6.7e-53  Score=394.81  Aligned_cols=222  Identities=32%  Similarity=0.536  Sum_probs=198.0

Q ss_pred             CcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCC-CchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHH
Q 014691           23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNF-NPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENER  100 (420)
Q Consensus        23 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~  100 (420)
                      .|+||+|+.+.+.+++.++++..+..++|++|||+|+|... +..+....+++. ...|+|||+|+.+|||.|++++++|
T Consensus         1 ~~~i~~~v~~~~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~~~EGG~~~~~~~~~   80 (231)
T COG0710           1 MPKIIVPVVGLDIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVKEGGEFPGSEEEY   80 (231)
T ss_pred             CCEEEEEeecCCHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEeehhhcCCCCCCHHHH
Confidence            48999999999999999999999999999999999999921 112334445543 3669999999999999999999999


Q ss_pred             HHHHHHHHHhC-CcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH
Q 014691          101 VDVLRLAMELG-ADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI  179 (420)
Q Consensus       101 ~~ll~~~~~~~-~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~  179 (420)
                      +++++.+++.+ ++|||||+..+++.++++...+ +..++|+|||||++||+++++.+++.+|.+.||||+|+|+||++.
T Consensus        81 i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~-~~~~vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKiAvm~~~~  159 (231)
T COG0710          81 IELLKKLAELNGPDYIDIELSSPEDDVKEIIKFA-KKHGVIVSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSK  159 (231)
T ss_pred             HHHHHHHHhhcCCCEEEEEccCcchhHHHHHhcc-ccCCEEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEEEecCCCH
Confidence            99999999986 9999999999987777776432 233399999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc---CCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhcc
Q 014691          180 TDVARVFQITVH---SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFR  247 (420)
Q Consensus       180 ~D~~~ll~~~~~---~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~  247 (420)
                      +|++++++++..   .+.|+|+||||..|++||+++++|||++||++++++  +||||++++++++++...
T Consensus       160 ~DvL~ll~~~~~~~~~~~p~i~i~MG~~G~~SRv~~~~~GS~~tya~~~~~--sAPGQi~v~~l~~~~~~l  228 (231)
T COG0710         160 EDVLDLLEATREFKEAEKPVITISMGKTGKISRVAGPVFGSPITYASLDKP--SAPGQISVDELRKILTLL  228 (231)
T ss_pred             HHHHHHHHHHHhccccCCCEEEEecCCCCchhhhhHhhhCCceeEeecCCC--CCCCCCCHHHHHHHHHHh
Confidence            999999999775   689999999999999999999999999999999985  999999999999998754

>TIGR01093 aroD 3-dehydroquinate dehydratase, type I

Probab=100.00  E-value=5.2e-53  Score=401.08  Aligned_cols=217  Identities=38%  Similarity=0.613  Sum_probs=192.1

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHh-----hCCCcEEEEeccCCCCCCCCCCHHH
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK-----ESPVPTLFTYRPIWEGGQYDGDENE   99 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~-----~~~~PiI~T~R~~~eGG~~~~~~~~   99 (420)
                      +||||+++++.+++..+++++ ..++|+||||+|+|.+..+.+.+..+.+     ..++|+|||+|+++|||.++.++++
T Consensus         1 ~i~v~~~~~~~~~~~~~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~   79 (228)
T TIGR01093         1 KIFVPLTAPDLEEALATAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEE   79 (228)
T ss_pred             CEEEEccCCCHHHHHHHHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHH
Confidence            589999999999999999987 7899999999999976543322222221     1478999999999999999999999


Q ss_pred             HHHHHHHH-HHhCCcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecC
Q 014691          100 RVDVLRLA-MELGADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL  177 (420)
Q Consensus       100 ~~~ll~~~-~~~~~d~iDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~  177 (420)
                      |+++|+.+ .+.++||||||+..+++..+++.. .+++++|||+|||||++||+++++.+++++|.++||||+|+|+||+
T Consensus        80 ~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~  159 (228)
T TIGR01093        80 YLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMAN  159 (228)
T ss_pred             HHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccC
Confidence            99999998 567799999999998888777763 4578999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhccC----CCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHH
Q 014691          178 DITDVARVFQITVHS----QVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY  244 (420)
Q Consensus       178 s~~D~~~ll~~~~~~----~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~  244 (420)
                      +.+|++++++++.+.    ++|+|+|+||+.|++||+++++|||++||++++++  +||||+++++|+++|
T Consensus       160 ~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~--sApGQ~~~~~l~~~~  228 (228)
T TIGR01093       160 SKEDVLTLLEITNKVDEHADVPLITMSMGDRGKISRVLGAVFGSVLTFGSLGKA--SAPGQISVDDLRELL  228 (228)
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChhHhhccccccccceeccCCCC--CCCCCcCHHHHHhhC
Confidence            999999999987543    57999999999999999999999999999999764  999999999999874

Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.

>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4

Probab=100.00  E-value=8.9e-53  Score=398.47  Aligned_cols=217  Identities=39%  Similarity=0.645  Sum_probs=183.8

Q ss_pred             EEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc---hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691           27 CVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNP---RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDV  103 (420)
Q Consensus        27 cv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l  103 (420)
                      ||||+++|.+|++++++++...++|+||||+|+|.+.+.   .+.+..+++..++|+|||+|+++|||.+..++++|+++
T Consensus         1 cv~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~l   80 (224)
T PF01487_consen    1 CVPLTGSTLEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLEL   80 (224)
T ss_dssp             EEEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHH
T ss_pred             CEeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHH
Confidence            999999999999999999877699999999999995322   34677777777999999999999999999999999999


Q ss_pred             HHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHH
Q 014691          104 LRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVA  183 (420)
Q Consensus       104 l~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~  183 (420)
                      |+.+++.|+||||||++..++........+.++++||+|||||++||+++++.+++++|.++||||+|+|+++++.+|++
T Consensus        81 l~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~  160 (224)
T PF01487_consen   81 LERAIRLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVL  160 (224)
T ss_dssp             HHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHH
T ss_pred             HHHHHHcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHH
Confidence            99999999999999999555443333333568999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccC----CCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691          184 RVFQITVHS----QVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (420)
Q Consensus       184 ~ll~~~~~~----~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~  245 (420)
                      ++++++.+.    +.|+|+|+||+.|++||+++++|||++||++.+++  +||||+++++|+++|+
T Consensus       161 ~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~~t~~~~~~~--sApGQl~~~~l~~~~~  224 (224)
T PF01487_consen  161 RLLRFTKEFREEPDIPVIAISMGELGRISRILNPIFGSVLTFASAGEA--SAPGQLTLEELREILH  224 (224)
T ss_dssp             HHHHHHHHHHHHTSSEEEEEEETGGGHHHHHCHHHHTBSEEEEBSSS---SSTT-EBHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCCcEEEEEcCCCchhHHHHHhhhcCCcccCCCCCC--CCCCCCcHHHHHHHhC
Confidence            999987654    58999999999999999999999999999977654  9999999999999985

2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....

>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase

Probab=100.00  E-value=8.3e-51  Score=385.30  Aligned_cols=215  Identities=37%  Similarity=0.605  Sum_probs=191.2

Q ss_pred             EEEEeecCC-CHHHHHHHHHhhhhcCCCEEEEEecCCCCCC---chhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH
Q 014691           25 LICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKNFN---PRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER  100 (420)
Q Consensus        25 ~icv~l~~~-~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~---~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~  100 (420)
                      +|||||.++ +.+|...+++...  ++|+||||+|+|.+..   ..++++.+++..+.|+|||+|+++|||.+..++++|
T Consensus         1 ~i~~~i~~~~~~~e~~~~~~~~~--~aD~vElR~D~~~~~~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~   78 (225)
T cd00502           1 KICVPLTGPDLLEEALSLLELLL--GADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEY   78 (225)
T ss_pred             CEEEEecCCCCHHHHHHHHHHhc--CCCEEEEEEeeccccchHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHHHH
Confidence            589999999 9999988776543  8999999999998642   234566676666799999999999999999999999


Q ss_pred             HHHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH
Q 014691          101 VDVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI  179 (420)
Q Consensus       101 ~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~  179 (420)
                      +++++.++++++||||||+.. + ..+++. ..+++++|||+|||+|++||+.+++.+.+++|.++||||+|+|+||++.
T Consensus        79 ~~ll~~~~~~~~d~vDiEl~~-~-~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKla~~~~~~  156 (225)
T cd00502          79 LELLEEALKLGPDYVDIELDS-A-LLEELINSRKKGNTKIIGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSI  156 (225)
T ss_pred             HHHHHHHHHHCCCEEEEEecc-h-HHHHHHHHHHhCCCEEEEEeccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCH
Confidence            999999999999999999987 3 333343 3356899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccC----CCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691          180 TDVARVFQITVHS----QVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (420)
Q Consensus       180 ~D~~~ll~~~~~~----~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~  245 (420)
                      +|++++++++...    +.|+|+|+||+.|++||++++.|||++||++++++  +||||+++++++++|+
T Consensus       157 ~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~--sApGQ~~~~~l~~~~~  224 (225)
T cd00502         157 EDNLRLLKFTRQVKNLYDIPLIAINMGELGKLSRILSPVFGSPLTYASLPEP--SAPGQLSVEELKQALS  224 (225)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEcCCCCchhhccccccCCcccccCCCCC--CCCCCcCHHHHHHHHh
Confidence            9999999987654    46999999999999999999999999999999874  9999999999999885

) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.

>PRK13575 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=9.9e-51  Score=386.23  Aligned_cols=220  Identities=24%  Similarity=0.405  Sum_probs=184.2

Q ss_pred             CcEEEEeecCCC-HHHH-HHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHH----h-hCCCcEEEEeccCCCCCCCCC
Q 014691           23 PTLICVPIMGES-VDKM-VVDMGKANASGADLVEIRLDGLKNFNPRENIKTLI----K-ESPVPTLFTYRPIWEGGQYDG   95 (420)
Q Consensus        23 ~~~icv~l~~~~-~~e~-~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~----~-~~~~PiI~T~R~~~eGG~~~~   95 (420)
                      .+.|++++.... +++. .++++.. ..+||+||||+|+|.+.+. +++..++    + ..+.|+|||+|+++|||.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vElRlD~l~~~~~-~~~~~~i~~l~~~~~~~p~I~T~Rt~~EGG~~~~   80 (238)
T PRK13575          3 HVEVAATIAPQLSIEETLIQKINHR-IDAIDIIELRIDQWENVTV-DQLAEMITKLKVLQDSFKLLVTYRTKLQGGYGQF   80 (238)
T ss_pred             ceeEeeeeccccccchhHHHHHHhc-CCCCCEEEEEeccccCCCH-HHHHHHHHHHHhhcCCCCEEEEeCChhhCCCCCC
Confidence            456777777664 5665 4444443 5679999999999987443 2344333    2 246899999999999999999


Q ss_pred             CHHHHHHHHHHHHHhC-CcEEEEEccc--ccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEE
Q 014691           96 DENERVDVLRLAMELG-ADYIDVELQV--AREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVK  171 (420)
Q Consensus        96 ~~~~~~~ll~~~~~~~-~d~iDiEl~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivK  171 (420)
                      ++++|+++++.++..+ +||||||+..  +.+..+++. ..+..+++||+|||||++||+.+++.+++++|.++||||+|
T Consensus        81 ~~~~~~~ll~~~~~~~~~d~vDiE~~~~~~~~~~~~l~~~~~~~~~~vI~S~H~F~~TP~~~~l~~~~~~m~~~gaDi~K  160 (238)
T PRK13575         81 TNDLYLNLLSDLANINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHHNFESTPPLDELKFIFFKMQKFNPEYVK  160 (238)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEEcccCCChHHHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence            9999999998888776 8999999986  334444544 34567899999999999999999999999999999999999


Q ss_pred             EEeecCCHHHHHHHHHHhcc----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691          172 FATTALDITDVARVFQITVH----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (420)
Q Consensus       172 ia~~~~s~~D~~~ll~~~~~----~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~  246 (420)
                      ||+||++.+|+++|++++.+    .+.|+|+|+||+.|++||+++++|||++||++++++  +||||+++++|++++++
T Consensus       161 iAv~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i~MG~~G~iSRi~~~~~GS~~Tya~l~~~--sAPGQi~v~~l~~i~~~  237 (238)
T PRK13575        161 LAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALSYGCIGEP--QAPGQIHVTDLKAQVTL  237 (238)
T ss_pred             EEecCCCHHHHHHHHHHHHHHHhccCCCEEEEeCCCCCchhhcchhhhCCceEecCCCCC--CCCCCCCHHHHHHHHHh
Confidence            99999999999999998654    367999999999999999999999999999999875  99999999999999864

>PRK13576 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=1.7e-49  Score=371.33  Aligned_cols=204  Identities=23%  Similarity=0.296  Sum_probs=174.4

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHH
Q 014691           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERV  101 (420)
Q Consensus        22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~  101 (420)
                      +.|+||+||++++.++++++++.   .++|+||||+|+|.+....  +..+++....|+|||+|+++|||.+++++++|+
T Consensus         1 ~~p~i~vpi~~~~~e~i~~~~~~---~~aD~vE~RlD~l~~~~~~--~~~~l~~~~~plI~T~R~~~EGG~~~~~~~~r~   75 (216)
T PRK13576          1 MRPLIVASLPIKKIEDLKLIGNF---LDADLIELRLDYLKDREVS--VIEFLDKYKDKLIVTLRDKAEGGINELDDELKI   75 (216)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhc---CCCCEEEEEeccccccchh--HHHHHHhcCCCEEEEeCChHHCCCCcCCHHHHH
Confidence            46899999999999999998654   5899999999999865433  333444456799999999999999999999999


Q ss_pred             HHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH-H
Q 014691          102 DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI-T  180 (420)
Q Consensus       102 ~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~-~  180 (420)
                      ++|+.+++.+. ++|||+....+..       ..+.++|+|||||++||+.++|.+++++|.+ ||||+|||+||++. .
T Consensus        76 ~ll~~~~~~~~-~vDiE~~~a~~~~-------~~~~~vI~S~HdF~~TP~~~eL~~~l~~m~~-gaDI~KiA~mp~~~~~  146 (216)
T PRK13576         76 SLLKELYDKQF-LYDVEASFLQKYN-------VPYDNKIVSIHYFDYLPTSEEVKEIVSKFYE-KAFSVKIAVLGLKGYK  146 (216)
T ss_pred             HHHHHHHHhCC-eEEEEcchhhhcC-------CCCCeEEEEECCCCCCcCHHHHHHHHHHHHh-cCCEEEEEeCCCCchH
Confidence            99999999975 7799997543321       1246799999999999999999999999987 99999999999985 7


Q ss_pred             HHH-HHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhcc
Q 014691          181 DVA-RVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFR  247 (420)
Q Consensus       181 D~~-~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~  247 (420)
                      |++ ++++   ..  .+|+|+||+.| +||+++++|||++||++++++  |||||+++++|+++|++.
T Consensus       147 d~l~~Ll~---~~--~~i~~~MG~~G-iSRi~~~~fGS~lTy~~~~~~--sAPGQi~v~~l~~i~~~l  206 (216)
T PRK13576        147 EVLLPLLE---YE--NVTVMPMSVNP-LERIAFSLLGSKLIYSYAIEP--TAQGQLHYKKVKQILNYL  206 (216)
T ss_pred             hHHHHHhc---cc--CccEEEcCCcc-HHHHHHHHhCCeeEEEecCCC--CCCCCccHHHHHHHHHHH
Confidence            765 5554   22  45889999999 999999999999999999975  999999999999999864

>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=1.4e-46  Score=354.92  Aligned_cols=215  Identities=20%  Similarity=0.289  Sum_probs=180.5

Q ss_pred             cccccc--cccCCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch--hHHHHHHhhCCCcEEEEe
Q 014691            9 ASGSKL--VSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR--ENIKTLIKESPVPTLFTY   84 (420)
Q Consensus         9 ~~~~~~--~~~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~--~~l~~l~~~~~~PiI~T~   84 (420)
                      -||-|+  .+-.++..+|+|||||++++.+|++.+++.+...+||+||||+|+|.+.+..  ..+...++..++|+|||+
T Consensus         4 ~~~~~~~v~~~~~g~~~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~~~~~~~~~~~~~l~~~~~p~I~T~   83 (229)
T PRK01261          4 YSGDKISIGKFVIGNMQPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHDHSIESEPEIISALNEMDIDYIFTY   83 (229)
T ss_pred             ccCCeEEEeCeEeCCCCcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCCCChHHHHHHHHHHhhcCCCEEEEE
Confidence            356554  6888999999999999999999999999988778999999999999874432  222233344589999999


Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHH
Q 014691           85 RPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQA  164 (420)
Q Consensus        85 R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~  164 (420)
                      |+.        ++   .++++.+++.++||||||+....++     ..+..++++|+|||    ||+.+++.+++++|.+
T Consensus        84 R~~--------~~---~~~l~~a~~~~~d~vDIEl~~~~~~-----~~~~~~~kvIvS~H----tp~~eeL~~~l~~m~~  143 (229)
T PRK01261         84 RGV--------DA---RKYYETAIDKMPPAVDLDINLIGKL-----EFRPRNTMLMVSYH----TNNSDNMPAILDIMNE  143 (229)
T ss_pred             cCC--------CH---HHHHHHHHhhCCCEEEEEcccchhh-----hhhcCCCeEEEEeC----CCCHHHHHHHHHHHHH
Confidence            942        22   4788888887799999999873332     12457999999999    7888999999999999


Q ss_pred             cCCCEEEEEeecCCHHHHHHHHHH----hccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhH
Q 014691          165 SGADIVKFATTALDITDVARVFQI----TVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL  240 (420)
Q Consensus       165 ~gaDivKia~~~~s~~D~~~ll~~----~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l  240 (420)
                      +||||+|+|+||++.+|+++++..    ....+.|+|+|+||+  ++||+++++|||++||++++++  |||||+++++|
T Consensus       144 ~gaDI~KiAvmp~~~~Dvl~~l~~~~~~~~~~~~p~i~isMG~--~iSRi~~~~fGS~lTyas~~~~--sAPGQi~v~~l  219 (229)
T PRK01261        144 KNPDYVKVACNYNDNKKFVDDLQYILMKKDEKYKPIVFIPMGR--EFLRIFSGYYVSDIVYARYDNE--TAPGQPKRDYY  219 (229)
T ss_pred             hCCCEEEEEeCCCChHHHHHHHHHHHHHHhcCCCCEEEEECCc--HHHHHHHHHHCCceEEeeCCCC--CCCCCCCHHHH
Confidence            999999999999999998877643    334578999999999  9999999999999999999975  99999999999


Q ss_pred             HHHHhcc
Q 014691          241 LDLYNFR  247 (420)
Q Consensus       241 ~~~~~~~  247 (420)
                      +++|+..
T Consensus       220 ~~~~~~~  226 (229)
T PRK01261        220 ESAFIKY  226 (229)
T ss_pred             HHHHHHh
Confidence            9999853

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.1e-47  Score=370.39  Aligned_cols=162  Identities=40%  Similarity=0.668  Sum_probs=150.7

Q ss_pred             cCCCceEEeeeccCccccccHHHHHHHHHHcCCCceeeccccc--cHHHHHHHhcCCCCCEEEEcccchHHHHhhhhccc
Q 014691          249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (420)
Q Consensus       249 ~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~  326 (420)
                      ++..++.|+|||+||+||+||.|||++|+++|+++.|.+++++  +|+.+++.++.+++.|+|||||||+++++++|++|
T Consensus         2 ~~~~t~~~~viG~Pi~HS~SP~~Hn~~~~~lGl~~~Y~a~~v~~~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~   81 (283)
T COG0169           2 MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELS   81 (283)
T ss_pred             CCCCceEEEEEcCCcccCcCHHHHHHHHHHcCCCceEEEeecCHHHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCC
Confidence            4567899999999999999999999999999999999999995  99999999999999999999999999999999999


Q ss_pred             HHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-
Q 014691          327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-  405 (420)
Q Consensus       327 ~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-  405 (420)
                      +.|+.+||||||+++. +|+|+||||||.||.++|++...         +.+.++++++|+||||||||++++|++.|+ 
T Consensus        82 ~~A~~iGAVNTl~~~~-~g~l~G~NTD~~G~~~~L~~~~~---------~~~~~~~~vlilGAGGAarAv~~aL~~~g~~  151 (283)
T COG0169          82 PRARLIGAVNTLVRED-DGKLRGYNTDGIGFLRALKEFGL---------PVDVTGKRVLILGAGGAARAVAFALAEAGAK  151 (283)
T ss_pred             HHHHHhCCceEEEEcc-CCEEEEEcCCHHHHHHHHHhcCC---------CcccCCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence            9999999999999982 49999999999999999987421         145578999999999999999999999998 


Q ss_pred             eEEEEeCChhhhhcC
Q 014691          406 RVVIANRTYENLQRL  420 (420)
Q Consensus       406 ~i~v~nR~~~ka~~L  420 (420)
                      +|+|+|||.+||++|
T Consensus       152 ~i~V~NRt~~ra~~L  166 (283)
T COG0169         152 RITVVNRTRERAEEL  166 (283)
T ss_pred             EEEEEeCCHHHHHHH
Confidence            999999999999875

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=100.00  E-value=9e-47  Score=368.32  Aligned_cols=157  Identities=29%  Similarity=0.435  Sum_probs=145.9

Q ss_pred             CceEEeeeccCccccccHHHHHHHHHHcCCCceeecccc-------ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhc
Q 014691          252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDE  324 (420)
Q Consensus       252 ~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~-------~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~  324 (420)
                      ++++|||+|+||+||+||.|||++|+++|+|+.|.++++       ++++++++.++.++|.|+|||||||++|++++|+
T Consensus         3 ~~~~~gliG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~lD~   82 (283)
T PRK14027          3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE   82 (283)
T ss_pred             CceEEEEECCCccccCCHHHHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHhhh
Confidence            578999999999999999999999999999999999985       4799999999989999999999999999999999


Q ss_pred             ccHHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCC
Q 014691          325 VDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKG  404 (420)
Q Consensus       325 l~~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g  404 (420)
                      +|+.|+.+||||||++.. +|+|+||||||.||+++|++..           .+.++|+++|+||||+|||++|+|.++|
T Consensus        83 l~~~A~~iGAVNTv~~~~-~g~l~G~NTD~~Gf~~~L~~~~-----------~~~~~k~vlilGaGGaarAi~~aL~~~g  150 (283)
T PRK14027         83 VSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEGL-----------PNAKLDSVVQVGAGGVGNAVAYALVTHG  150 (283)
T ss_pred             CCHHHHHhCCceEEEECC-CCcEEEEcCCHHHHHHHHHhcC-----------cCcCCCeEEEECCcHHHHHHHHHHHHCC
Confidence            999999999999999852 8999999999999999997532           2456899999999999999999999999


Q ss_pred             C-eEEEEeCChhhhhcC
Q 014691          405 A-RVVIANRTYENLQRL  420 (420)
Q Consensus       405 ~-~i~v~nR~~~ka~~L  420 (420)
                      + +|+|+|||.+||++|
T Consensus       151 ~~~i~i~nR~~~ka~~L  167 (283)
T PRK14027        151 VQKLQVADLDTSRAQAL  167 (283)
T ss_pred             CCEEEEEcCCHHHHHHH
Confidence            9 999999999999864

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=100.00  E-value=4.9e-46  Score=364.16  Aligned_cols=159  Identities=30%  Similarity=0.495  Sum_probs=146.5

Q ss_pred             cCCCceEEeeeccCccccccHHHHHHHHHHcCCCceeeccccc--cHHHHHHHhcCCCCCEEEEcccchHHHHhhhhccc
Q 014691          249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (420)
Q Consensus       249 ~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~  326 (420)
                      ++..|++|||+|+||+||+||.|||++|+++|+|++|.+++++  +|+++++.++..+|.|+|||||||++|++|+|++|
T Consensus         3 ~~~~t~~~gliG~Pi~hSlSP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~~~~~~D~l~   82 (288)
T PRK12749          3 VTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELT   82 (288)
T ss_pred             cCCCceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCC
Confidence            3456889999999999999999999999999999999999984  79999999988899999999999999999999999


Q ss_pred             HHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-
Q 014691          327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-  405 (420)
Q Consensus       327 ~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-  405 (420)
                      +.|+.+||||||+++  +|+|+||||||.||+++|++..           .++++|+++||||||+|||++++|..+|+ 
T Consensus        83 ~~A~~iGAVNTv~~~--~g~l~G~NTD~~Gf~~~l~~~~-----------~~~~~k~vlvlGaGGaarAi~~~l~~~g~~  149 (288)
T PRK12749         83 PAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKESG-----------FDIKGKTMVLLGAGGASTAIGAQGAIEGLK  149 (288)
T ss_pred             HHHHHhCceeEEEcc--CCEEEEEecCHHHHHHHHHhcC-----------CCcCCCEEEEECCcHHHHHHHHHHHHCCCC
Confidence            999999999999876  8999999999999999997531           45678999999999999999999999999 


Q ss_pred             eEEEEeCCh---hhhhcC
Q 014691          406 RVVIANRTY---ENLQRL  420 (420)
Q Consensus       406 ~i~v~nR~~---~ka~~L  420 (420)
                      +|+|+|||.   +||++|
T Consensus       150 ~i~i~nRt~~~~~ka~~l  167 (288)
T PRK12749        150 EIKLFNRRDEFFDKALAF  167 (288)
T ss_pred             EEEEEeCCccHHHHHHHH
Confidence            999999994   577653

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=1.6e-45  Score=360.34  Aligned_cols=158  Identities=29%  Similarity=0.434  Sum_probs=146.7

Q ss_pred             CCCceEEeeeccCccccccHHHHHHHHHHcCCCceeecccc-------ccHHHHHHHhcCCCCCEEEEcccchHHHHhhh
Q 014691          250 GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCC  322 (420)
Q Consensus       250 ~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~-------~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~  322 (420)
                      +..+++|+|+|+||+||+||.|||++|+++|+|+.|.++++       ++|+++++.++..+|.|+|||||||+++++++
T Consensus         2 ~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~   81 (284)
T PRK12549          2 SRPSFLAGLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLNITHPCKQAVIPHL   81 (284)
T ss_pred             CccceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHh
Confidence            34578999999999999999999999999999999999986       37899999998899999999999999999999


Q ss_pred             hcccHHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHh
Q 014691          323 DEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA  402 (420)
Q Consensus       323 d~l~~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~  402 (420)
                      |++|+.|+.+||||||+++  +|+|+||||||.||+++|++..           .++++|+|+|||+||+||+++++|..
T Consensus        82 D~~~~~A~~iGAvNTv~~~--~g~l~G~NTD~~G~~~~l~~~~-----------~~~~~k~vlIlGaGGaaraia~aL~~  148 (284)
T PRK12549         82 DELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRGL-----------PDASLERVVQLGAGGAGAAVAHALLT  148 (284)
T ss_pred             ccCCHHHHHhCCceEEEec--CCEEEEEcCCHHHHHHHHHhhc-----------cCccCCEEEEECCcHHHHHHHHHHHH
Confidence            9999999999999999886  8999999999999999997542           24568999999999999999999999


Q ss_pred             CCC-eEEEEeCChhhhhcC
Q 014691          403 KGA-RVVIANRTYENLQRL  420 (420)
Q Consensus       403 ~g~-~i~v~nR~~~ka~~L  420 (420)
                      .|+ +|+|+||+.+|++.|
T Consensus       149 ~G~~~I~I~nR~~~ka~~l  167 (284)
T PRK12549        149 LGVERLTIFDVDPARAAAL  167 (284)
T ss_pred             cCCCEEEEECCCHHHHHHH
Confidence            999 999999999998864

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=100.00  E-value=6.8e-45  Score=355.73  Aligned_cols=157  Identities=34%  Similarity=0.500  Sum_probs=142.4

Q ss_pred             ceEEeeeccCccccccHHHHHHHHHHcCCCceeeccccc---cHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHH
Q 014691          253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD---DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVA  329 (420)
Q Consensus       253 ~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~---~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A  329 (420)
                      ++.|+|||+||+||+||.|||++|+++|+|+.|.++++.   ++.++++.++ .+|.|+|||||||+++++++|++|+.|
T Consensus         5 ~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~~~~l~~~~~~~~-~~~~G~nVT~P~K~~~~~~~d~~~~~A   83 (282)
T TIGR01809         5 PKKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGFG-PQFGGASVTIPLKFAILRFADEHTDRA   83 (282)
T ss_pred             CeEEEEEcCCchhccCHHHHHHHHHHcCCCcEEEeeecCCHHHHHHHHHhcC-CCCcEEEECCCCHHHHHHHhhcCCHHH
Confidence            679999999999999999999999999999999999873   6888888774 499999999999999999999999999


Q ss_pred             HHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-eEE
Q 014691          330 KSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVV  408 (420)
Q Consensus       330 ~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~  408 (420)
                      +.+||||||++.. +|+|+||||||.||+.+|++...         ..++++|+++||||||+||+++++|.++|+ +|+
T Consensus        84 ~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~~~---------~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~  153 (282)
T TIGR01809        84 SLIGSVNTLLRTQ-NGIWKGDNTDWDGIAGALANIGK---------FEPLAGFRGLVIGAGGTSRAAVYALASLGVTDIT  153 (282)
T ss_pred             HHhCceeEEEEcC-CCcEEEecCCHHHHHHHHHhhCC---------ccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEE
Confidence            9999999999852 89999999999999999976310         014678999999999999999999999999 899


Q ss_pred             EEeCChhhhhcC
Q 014691          409 IANRTYENLQRL  420 (420)
Q Consensus       409 v~nR~~~ka~~L  420 (420)
                      |+|||.+|+++|
T Consensus       154 I~nRt~~ka~~L  165 (282)
T TIGR01809       154 VINRNPDKLSRL  165 (282)
T ss_pred             EEeCCHHHHHHH
Confidence            999999999864

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-44  Score=354.39  Aligned_cols=158  Identities=34%  Similarity=0.549  Sum_probs=146.3

Q ss_pred             cCCCceEEeeeccCccccccHHHHHHHHHHcCCCceeeccccc--cHHHHHHHhcCCCCCEEEEcccchHHHHhhhhccc
Q 014691          249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (420)
Q Consensus       249 ~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~  326 (420)
                      ++..|++|||||+||+||+||.|||++|+++|+|+.|.+++++  ++.++++.++..+|.|+|||||||++|++++|++|
T Consensus         5 ~~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~ld~~~   84 (289)
T PRK12548          5 ISGTTGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMRGANVTMPCKSEAAKYMDELS   84 (289)
T ss_pred             cCCceeEEEEEcCCcccccCHHHHHHHHHHcCCCEEEEEEecCHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhhcCC
Confidence            5567889999999999999999999999999999999999984  79999999988899999999999999999999999


Q ss_pred             HHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-
Q 014691          327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-  405 (420)
Q Consensus       327 ~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-  405 (420)
                      +.|+.+||||||+++  +|+|+||||||.||+.+|++..           ..+++|+++|+||||+|||++++|+..|+ 
T Consensus        85 ~~A~~iGavNTi~~~--~g~l~G~NTD~~G~~~~l~~~~-----------~~~~~k~vlI~GAGGagrAia~~La~~G~~  151 (289)
T PRK12548         85 PAARIIGAVNTIVND--DGKLTGHITDGLGFVRNLREHG-----------VDVKGKKLTVIGAGGAATAIQVQCALDGAK  151 (289)
T ss_pred             HHHHHhCceeEEEeE--CCEEEEEecCHHHHHHHHHhcC-----------CCcCCCEEEEECCcHHHHHHHHHHHHCCCC
Confidence            999999999999887  8999999999999999997532           34678999999999999999999999999 


Q ss_pred             eEEEEeCCh---hhhhc
Q 014691          406 RVVIANRTY---ENLQR  419 (420)
Q Consensus       406 ~i~v~nR~~---~ka~~  419 (420)
                      +|+|+||+.   +++++
T Consensus       152 ~V~I~~R~~~~~~~a~~  168 (289)
T PRK12548        152 EITIFNIKDDFYERAEQ  168 (289)
T ss_pred             EEEEEeCCchHHHHHHH
Confidence            699999996   66654

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=4.1e-44  Score=349.79  Aligned_cols=159  Identities=38%  Similarity=0.656  Sum_probs=148.0

Q ss_pred             CCCceEEeeeccCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccH
Q 014691          250 GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDT  327 (420)
Q Consensus       250 ~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~  327 (420)
                      +.+|+.|+|+|+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++..+|.|+|||||||+++++++|++|+
T Consensus         2 ~~~~~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~   81 (278)
T PRK00258          2 TGKTRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGRGANVTVPFKEAAFALADELSE   81 (278)
T ss_pred             CCceeEEEEECCchhcccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHhhcCCH
Confidence            45689999999999999999999999999999999999999  5899999999888999999999999999999999999


Q ss_pred             HHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-e
Q 014691          328 VAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-R  406 (420)
Q Consensus       328 ~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~  406 (420)
                      .|+.+||||||+++  +|+|+||||||.||+.+|++...          .++.+|+++|+|+||+||+++++|...|+ +
T Consensus        82 ~A~~igavNtv~~~--~g~l~G~NTD~~G~~~~l~~~~~----------~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~  149 (278)
T PRK00258         82 RARLIGAVNTLVLE--DGRLIGDNTDGIGFVRALEERLG----------VDLKGKRILILGAGGAARAVILPLLDLGVAE  149 (278)
T ss_pred             HHHHhCCceEEEee--CCEEEEEcccHHHHHHHHHhccC----------CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCE
Confidence            99999999999976  89999999999999999975321          35778999999999999999999999996 9


Q ss_pred             EEEEeCChhhhhcC
Q 014691          407 VVIANRTYENLQRL  420 (420)
Q Consensus       407 i~v~nR~~~ka~~L  420 (420)
                      |+|+||+.+++++|
T Consensus       150 V~v~~R~~~~a~~l  163 (278)
T PRK00258        150 ITIVNRTVERAEEL  163 (278)
T ss_pred             EEEEeCCHHHHHHH
Confidence            99999999998753

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=5e-44  Score=346.99  Aligned_cols=157  Identities=24%  Similarity=0.396  Sum_probs=144.3

Q ss_pred             ccCCCceE-EeeeccCccccccHHHHHHHHHHcCCCceeeccccccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhccc
Q 014691          248 QMGPDTKV-FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (420)
Q Consensus       248 ~~~~~~~~-~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~  326 (420)
                      ++.++|++ |||+|+|  ||+||.|||++|+++|+|+.|.+++.++++++++.++..+|.|+|||||||++|++|+|++|
T Consensus         4 ~~~~~~~~~~gliG~P--~~~Sp~ihn~~f~~~gl~~~Y~~~~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~lD~l~   81 (272)
T PRK12550          4 MINKDTQLCISLAARP--SNFGTRFHNYLYEALGLNFLYKAFTTTDLTAAIGGVRALGIRGCAVSMPFKEAVIPLVDELD   81 (272)
T ss_pred             cCCCCceEEEEEEccc--hhcCHHHHHHHHHHcCCCcEEEecCHhHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhcCC
Confidence            45677884 9999999  77889999999999999999999998899999999998999999999999999999999999


Q ss_pred             HHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-
Q 014691          327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-  405 (420)
Q Consensus       327 ~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-  405 (420)
                      +.|+.+||||||+++  +|+|+||||||.||+++|++..           .. .+++++|+||||+|||++++|.++|+ 
T Consensus        82 ~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~~-----------~~-~~~~vlilGaGGaarAi~~aL~~~g~~  147 (272)
T PRK12550         82 PSAQAIESVNTIVNT--DGHLKAYNTDYIAIAKLLASYQ-----------VP-PDLVVALRGSGGMAKAVAAALRDAGFT  147 (272)
T ss_pred             HHHHHhCCeeEEEee--CCEEEEEecCHHHHHHHHHhcC-----------CC-CCCeEEEECCcHHHHHHHHHHHHCCCC
Confidence            999999999999887  8999999999999999997531           22 35789999999999999999999999 


Q ss_pred             eEEEEeCChhhhhcC
Q 014691          406 RVVIANRTYENLQRL  420 (420)
Q Consensus       406 ~i~v~nR~~~ka~~L  420 (420)
                      +|+|+|||.+|+++|
T Consensus       148 ~i~i~nR~~~~a~~l  162 (272)
T PRK12550        148 DGTIVARNEKTGKAL  162 (272)
T ss_pred             EEEEEeCCHHHHHHH
Confidence            899999999999864

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=100.00  E-value=2.4e-42  Score=335.92  Aligned_cols=153  Identities=39%  Similarity=0.646  Sum_probs=142.6

Q ss_pred             eEEeeeccCccccccHHHHHHHHHHcCCCceeeccccc--cHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHHHH
Q 014691          254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS  331 (420)
Q Consensus       254 ~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~  331 (420)
                      ++|||+|+||+||+||.|||++|+++|+|+.|.+++++  +++++++.++.++|.|+|||||||+++++++|++++.|+.
T Consensus         1 ~~~~viG~pi~hS~SP~~hn~~~~~~g~~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~   80 (270)
T TIGR00507         1 KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVTSPFKEEAFQFLDEIDERAKL   80 (270)
T ss_pred             CEEEEECCccccccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhhCCHHHHH
Confidence            47999999999999999999999999999999999984  7999999999899999999999999999999999999999


Q ss_pred             hcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEe
Q 014691          332 IGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIAN  411 (420)
Q Consensus       332 iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~n  411 (420)
                      +||||||+++  +|+|+||||||.||+++|++..           ...++|+++|+|+||+|++++++|.+.|++|+++|
T Consensus        81 ~gavNti~~~--~g~l~g~NTD~~G~~~~l~~~~-----------~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~  147 (270)
T TIGR00507        81 AGAVNTLKLE--DGKLVGYNTDGIGLVSDLERLI-----------PLRPNQRVLIIGAGGAARAVALPLLKADCNVIIAN  147 (270)
T ss_pred             hCCceEEEee--CCEEEEEcCCHHHHHHHHHhcC-----------CCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Confidence            9999999976  8999999999999999997521           23467899999999999999999999999999999


Q ss_pred             CChhhhhc
Q 014691          412 RTYENLQR  419 (420)
Q Consensus       412 R~~~ka~~  419 (420)
                      |+.+++++
T Consensus       148 R~~~~~~~  155 (270)
T TIGR00507       148 RTVSKAEE  155 (270)
T ss_pred             CCHHHHHH
Confidence            99988765

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]

Probab=99.96  E-value=3.7e-32  Score=271.20  Aligned_cols=390  Identities=16%  Similarity=0.071  Sum_probs=306.8

Q ss_pred             CCCCCCcEEEEeecCCCHHHHHHHHH----hhhhcCCCEEEEEecCCCCCC-chhHHHHHHhhCCCcEEEEeccCCCCCC
Q 014691           18 GMRKNPTLICVPIMGESVDKMVVDMG----KANASGADLVEIRLDGLKNFN-PRENIKTLIKESPVPTLFTYRPIWEGGQ   92 (420)
Q Consensus        18 ~~~~~~~~icv~l~~~~~~e~~~~~~----~~~~~~~D~vElRlD~l~~~~-~~~~l~~l~~~~~~PiI~T~R~~~eGG~   92 (420)
                      ...++..++|    .++..+++..+.    ++.+.+++++|.|.|-...++ +.+.....+....+|.|++.|..||+|.
T Consensus        89 taeKas~iV~----~pdir~i~~~i~~pgSKs~snralllaa~~eg~~~~~n~L~sddt~~m~sal~~L~~~~~~we~~~  164 (595)
T KOG0692|consen   89 TAEKASEIVL----QPDIREISGLIKLPGSKSLSNRALLLAALSEGTTVVDNLLNSDDTNYMLSALKTLGLNVETWEENN  164 (595)
T ss_pred             hhhhcchhhc----ChhHHHhhceeeCCCCchhhhhHHHHHHHhccceeccccccccchhhhhhhHHHhccccceecCCC
Confidence            4455555555    444555444222    122344555555555444333 1111222233467899999999999998


Q ss_pred             ---CCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCE
Q 014691           93 ---YDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADI  169 (420)
Q Consensus        93 ---~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDi  169 (420)
                         .++...++-..++..++++.+|+|.|++..-++...+-+...+..+||.+.|+.+.+|    +-..+..+++.||||
T Consensus       165 ~~vveG~gg~~~~~~~~~~eLylgnagta~r~lt~~aa~v~~k~~~k~~Vl~g~hrmq~rP----i~~LV~~l~q~GadI  240 (595)
T KOG0692|consen  165 RAVVEGCGGEFSIDSKSDIELYLGNAGTAMRPLTEFAAAVTAKGGNKSYVLDGVHRMQERP----IGDLVVGLKQLGADI  240 (595)
T ss_pred             EEEEEcCCCeeeechhhhhhhccCccchhhhhHHHHHHHhhcCCCCceEEEecCcccccCC----chHHHHHHHhcCCce
Confidence               6777666656677788899999999999877776666555555569999999999999    556678888899999


Q ss_pred             EEEEeecCCHHHHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHH--hcc
Q 014691          170 VKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY--NFR  247 (420)
Q Consensus       170 vKia~~~~s~~D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~--~~~  247 (420)
                      .|++.+...+-|+. ....++..++|+++.-||+.+..+|+++|.++.++||+.++..+-|+|+|.....|.+.|  ++.
T Consensus       241 ~~~~~t~~~p~dv~-~~~~~~gg~v~l~g~Vssqy~~~~lm~ap~a~g~vt~~~vdgk~iS~pyv~mt~~lme~fgvn~~  319 (595)
T KOG0692|consen  241 ECTLGTNCPPVDVN-ANGGLPGGKVKLSGSVSSQYLTALLMCAPLALGDVTIEIVDGKLISVPYVEMTLKLMERFGVNVE  319 (595)
T ss_pred             EEeccCCCCceeee-ccCCCcCceeeeeeeehhhHHHHHHHhhhhcCCceEEEeecCccccccchhHHHHHHHHhCcCeE
Confidence            99999999999997 566677778999999999999999999999999999999997778999999999999999  788


Q ss_pred             ccCCCceEEeeeccCccccccHHHHHHHHHHcCCCceeeccccccHHHHHHHhcCCCCCEEE-EcccchHHHHhhhhccc
Q 014691          248 QMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS-CTIPHKEAAVKCCDEVD  326 (420)
Q Consensus       248 ~~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~~-VT~P~K~~i~~~~d~l~  326 (420)
                      ...+.++.|++.|.|+.|+.+|.+||.+|.+.-..+.|...-++-.-.++..-...++.||+ |+.|||.++...+++.+
T Consensus       320 ~s~~~~~~y~i~g~~y~~p~~~~ve~dAssa~yfla~aa~tg~~~tV~~~g~~Slqgda~Fa~vl~pmgc~v~qt~~svt  399 (595)
T KOG0692|consen  320 HSTSWDRFYVIGGQKYKSPGNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQGDAKFAEVLEPMGCKVSQTENSVT  399 (595)
T ss_pred             ecCCCcceEeccCcccCCCCCceeecccccccccceeeeEecceeeeccccceecccccchHhhhccccceeeeeccccc
Confidence            99999999999999999999999999999999888888876655444455555567899999 99999999999999999


Q ss_pred             HHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCC--cccccCCCEEEEEccchHHHHHHHHHHhCC
Q 014691          327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGG--VSSALAGKLFVVIGAGGAGKALAYGAKAKG  404 (420)
Q Consensus       327 ~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~--~~~~~~~k~vlviGaGGaara~~~aL~~~g  404 (420)
                      ..+.-+||+|++-++.-|+...++|||..|-+.++...+...+++..-  .......+...|||.|+..++..+...+.+
T Consensus       400 v~gp~~ga~~~~~lr~iD~m~~m~d~~~t~svvA~~~~~~s~gdptti~~~as~rvket~r~ia~~~el~klg~~~~E~~  479 (595)
T KOG0692|consen  400 VTGPPRGAFGMRHLRAIDVMNKMPDVAMTLSVVALFAGLRSSGDPTTIRDVASWRVKETERMIAICTELRKLGATVEEGS  479 (595)
T ss_pred             ccCCCCCcccceehhhhcccccccchhHhHhHHHHhhcccCCCCCcccccccchhHHHHHHHHHHHHHHHHhcccccccC
Confidence            999999999999987447789999999999999998776543332100  001122345688999999999999998888


Q ss_pred             CeEEEEeCChhhh
Q 014691          405 ARVVIANRTYENL  417 (420)
Q Consensus       405 ~~i~v~nR~~~ka  417 (420)
                      ..++|++|+ +|+
T Consensus       480 dg~~v~~~~-~k~  491 (595)
T KOG0692|consen  480 DGYCVITPP-EKK  491 (595)
T ss_pred             ceEEEeCCc-hHh
Confidence            889999999 443

>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []

Probab=99.95  E-value=2.4e-28  Score=196.04  Aligned_cols=81  Identities=41%  Similarity=0.806  Sum_probs=75.1

Q ss_pred             eeccCccccccHHHHHHHHHHcCCCceeeccccc--cHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHHHHhcce
Q 014691          258 IIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAV  335 (420)
Q Consensus       258 v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAv  335 (420)
                      |+|+||+||+||.|||++|+++|+|+.|.+++++  +++++++.++..+|.|+|||||||+++++++|++|+.|+.+|||
T Consensus         1 viG~pi~hS~SP~~hn~~f~~~g~~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~~VT~P~K~~~~~~~D~~~~~A~~igAv   80 (83)
T PF08501_consen    1 VIGNPISHSLSPLIHNAAFEALGLDAVYIPFEVEPEDLEDFLDALRAPNFRGLNVTMPHKEAAIPYLDELSPSAKAIGAV   80 (83)
T ss_dssp             EEESSSTT-SHHHHHHHHHHHTTSSEEEEEEETSTTCHHHHHHHHHHTTESEEEE-TTSTTHHGGGSSEE-HHHHHHTS-
T ss_pred             CcCCCcccccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHhcCCCCeeeecchHHHHHHHHhccCCHHHHHhCCc
Confidence            6999999999999999999999999999999995  99999999998999999999999999999999999999999999


Q ss_pred             eEE
Q 014691          336 NCI  338 (420)
Q Consensus       336 NTi  338 (420)
                      |||
T Consensus        81 Ntv   83 (83)
T PF08501_consen   81 NTV   83 (83)
T ss_dssp             SEE
T ss_pred             ccC
Confidence            997

Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.79  E-value=3.6e-19  Score=173.82  Aligned_cols=142  Identities=23%  Similarity=0.365  Sum_probs=121.4

Q ss_pred             EeeeccCccccccHHHHHHHHHHcCCCceeecc--cc--ccHHHHHHHhcCC-CCCEEEEcccchHHHHh--hhhcccHH
Q 014691          256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHL--LV--DDIAKFFQTYSSN-DFAGFSCTIPHKEAAVK--CCDEVDTV  328 (420)
Q Consensus       256 ~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~--~~--~~l~~~~~~~~~~-~~~G~~VT~P~K~~i~~--~~d~l~~~  328 (420)
                      .-++|+.=+.-.--.+|+.+|+++|++..|.++  ++  +++.++++.++.. ++.|++||+|||+.+.+  ++|++ +.
T Consensus        38 ~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~  116 (283)
T PRK14192         38 TILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAI-SL  116 (283)
T ss_pred             EEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhcc-CH
Confidence            345564433333347999999999999999999  55  3788888888655 79999999999999999  99999 88


Q ss_pred             HHHhcceeEEEEeccCCe------EEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHH
Q 014691          329 AKSIGAVNCIIRRQSDGK------LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAK  401 (420)
Q Consensus       329 A~~iGAvNTi~~~~~~g~------l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~  401 (420)
                      ++.++++||+ +   +|+      ++|+||| .||++.|+..           +.+++||+|+|+|+|| +||++++.|.
T Consensus       117 aKDVdg~n~~-n---~G~l~~~~~~~~p~T~-~gii~~L~~~-----------~i~l~Gk~vvViG~gg~vGkpia~~L~  180 (283)
T PRK14192        117 AKDVDGVTCL-G---FGRMAMGEAAYGSATP-AGIMRLLKAY-----------NIELAGKHAVVVGRSAILGKPMAMMLL  180 (283)
T ss_pred             HHhcCCCCcc-c---cCccccCCCcccCCcH-HHHHHHHHHc-----------CCCCCCCEEEEECCcHHHHHHHHHHHH
Confidence            9999999999 3   466      8999999 9999998764           2578999999999999 9999999999


Q ss_pred             hCCCeEEEEeCCh
Q 014691          402 AKGARVVIANRTY  414 (420)
Q Consensus       402 ~~g~~i~v~nR~~  414 (420)
                      +.|+.|++++|..
T Consensus       181 ~~gatVtv~~~~t  193 (283)
T PRK14192        181 NANATVTICHSRT  193 (283)
T ss_pred             hCCCEEEEEeCCc
Confidence            9999999999843

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.81  E-value=4.9e-09  Score=91.66  Aligned_cols=44  Identities=48%  Similarity=0.639  Sum_probs=41.0

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhhcC
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQRL  420 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~~L  420 (420)
                      .++++++++||||||+||+++++|...|+ +|+|+|||.+|+++|
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l   52 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEAL   52 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHH
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHH
Confidence            36789999999999999999999999999 799999999999864

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK08291 ectoine utilization protein EutC; Validated

Probab=98.61  E-value=3.6e-08  Score=98.91  Aligned_cols=76  Identities=21%  Similarity=0.224  Sum_probs=63.3

Q ss_pred             HHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHh-CCC-eE
Q 014691          330 KSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA-KGA-RV  407 (420)
Q Consensus       330 ~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~-~g~-~i  407 (420)
                      ..+|++||++..  +++|.|+|||+.|++.+..  +.           ....++++|||+|++|++.+.++.. .++ +|
T Consensus        96 ~~tG~~~ai~~d--~~~lt~~rT~a~~~~a~~~--la-----------~~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V  160 (330)
T PRK08291         96 ARTGLVEALLLD--NGYLTDVRTAAAGAVAARH--LA-----------REDASRAAVIGAGEQARLQLEALTLVRPIREV  160 (330)
T ss_pred             CCCCceEEEEcC--CchHHHHHHHHHHHHHHHH--hC-----------CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEE
Confidence            467999999765  7899999999999999864  21           1235789999999999999999985 567 89


Q ss_pred             EEEeCChhhhhcC
Q 014691          408 VIANRTYENLQRL  420 (420)
Q Consensus       408 ~v~nR~~~ka~~L  420 (420)
                      +|+||+.++++++
T Consensus       161 ~v~~R~~~~a~~l  173 (330)
T PRK08291        161 RVWARDAAKAEAY  173 (330)
T ss_pred             EEEcCCHHHHHHH
Confidence            9999999998753

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=98.49  E-value=1.2e-07  Score=94.92  Aligned_cols=76  Identities=18%  Similarity=0.239  Sum_probs=63.2

Q ss_pred             HHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHH-hCCC-eE
Q 014691          330 KSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAK-AKGA-RV  407 (420)
Q Consensus       330 ~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~-~~g~-~i  407 (420)
                      ...|++|+++..  ++.+.|+|||+.|++.+..  +.           ....++++|||+|++|++.+.+|. ..++ +|
T Consensus        93 ~~tG~~~ai~~d--~~~lT~~RTaa~~~laa~~--la-----------~~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v  157 (326)
T TIGR02992        93 SRTGLLQALLLD--NGYLTDVRTAAAGAVAARH--LA-----------REDSSVVAIFGAGMQARLQLEALTLVRDIRSA  157 (326)
T ss_pred             CCCCCceEEEcC--CchHHHHHHHHHHHHHHHH--hC-----------CCCCcEEEEECCCHHHHHHHHHHHHhCCccEE
Confidence            356999999765  7889999999999998863  21           113578999999999999999997 4777 89


Q ss_pred             EEEeCChhhhhcC
Q 014691          408 VIANRTYENLQRL  420 (420)
Q Consensus       408 ~v~nR~~~ka~~L  420 (420)
                      +|+||+.+|++++
T Consensus       158 ~V~~R~~~~a~~~  170 (326)
T TIGR02992       158 RIWARDSAKAEAL  170 (326)
T ss_pred             EEECCCHHHHHHH
Confidence            9999999998853

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.38  E-value=7.8e-07  Score=78.70  Aligned_cols=57  Identities=42%  Similarity=0.664  Sum_probs=49.6

Q ss_pred             cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhhc
Q 014691          352 TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQR  419 (420)
Q Consensus       352 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~~  419 (420)
                      |||+||.+++++..           .++++++++|+|+|++|++++.+|.+.|. +|++++|+.+++++
T Consensus         1 td~~g~~~a~~~~~-----------~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~   58 (155)
T cd01065           1 TDGLGFVRALEEAG-----------IELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKA   58 (155)
T ss_pred             CCHHHHHHHHHhhC-----------CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHH
Confidence            89999999998641           34678999999999999999999999975 89999999887754

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.16  E-value=4.7e-07  Score=93.88  Aligned_cols=98  Identities=28%  Similarity=0.338  Sum_probs=74.8

Q ss_pred             chHHHHhhhhcccHHHHHhcceeEEEEec-----cCCeEEEEecCHHHHH-----HHHHhhhccCCCCCCCcccccCCCE
Q 014691          314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----SDGKLFGYNTDYVGAI-----SAIEDGLRGRLNVSGGVSSALAGKL  383 (420)
Q Consensus       314 ~K~~i~~~~d~l~~~A~~iGAvNTi~~~~-----~~g~l~G~NTD~~G~~-----~~l~~~~~~~~~~~~~~~~~~~~k~  383 (420)
                      =+.+|+++++.....|+..|++|+++..-     ..++.++++|+..+.-     .+++.....        ..++.+++
T Consensus       113 GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~~~~k~v~~~t~i~~~~~Sv~~~Av~~a~~~--------~~~~~~~~  184 (423)
T PRK00045        113 GEPQILGQVKDAYALAQEAGTVGTILNRLFQKAFSVAKRVRTETGIGAGAVSVASAAVELAKQI--------FGDLSGKK  184 (423)
T ss_pred             CChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhHhhhcCCCCCCcCHHHHHHHHHHHh--------hCCccCCE
Confidence            46789999999999999999999987320     1456778888854431     223222110        02467899


Q ss_pred             EEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhhc
Q 014691          384 FVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQR  419 (420)
Q Consensus       384 vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~~  419 (420)
                      ++|+|+|++|+.++..|...|+ +|+++||+.++++.
T Consensus       185 vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~  221 (423)
T PRK00045        185 VLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEE  221 (423)
T ss_pred             EEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH
Confidence            9999999999999999999998 89999999998764

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=98.13  E-value=1.5e-06  Score=89.61  Aligned_cols=95  Identities=22%  Similarity=0.268  Sum_probs=67.5

Q ss_pred             hHHHHhhhhcccHHHHHhcceeEEEEec-----------cCCeEEEEecCHHHHH--HHHHhhhccCCCCCCCcccccCC
Q 014691          315 KEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----------SDGKLFGYNTDYVGAI--SAIEDGLRGRLNVSGGVSSALAG  381 (420)
Q Consensus       315 K~~i~~~~d~l~~~A~~iGAvNTi~~~~-----------~~g~l~G~NTD~~G~~--~~l~~~~~~~~~~~~~~~~~~~~  381 (420)
                      ..+|+.++.+.-..|+..|+++.++.+-           .+.+-+|.+.=..+.+  ...++.+           .++.+
T Consensus       113 E~QIlgQVK~A~~~A~~~g~~g~~L~~lf~~A~~~aKrVrteT~I~~~~vSv~~~Av~la~~~~-----------~~l~~  181 (414)
T PRK13940        113 EPQILGQVKDSYTLSKKNHAIGKELDRVFQKVFATAKRVRSETRIGHCPVSVAFSAITLAKRQL-----------DNISS  181 (414)
T ss_pred             cHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHh-----------cCccC
Confidence            4578888888888888888887766430           1122233333333322  2222222           35789


Q ss_pred             CEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhhcC
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQRL  420 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~~L  420 (420)
                      ++++|||+||+|++++.+|...|+ +|+|+|||.+||+.|
T Consensus       182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~L  221 (414)
T PRK13940        182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKI  221 (414)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            999999999999999999999998 999999999998764

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=98.03  E-value=1.3e-05  Score=82.07  Aligned_cols=145  Identities=19%  Similarity=0.295  Sum_probs=94.9

Q ss_pred             eEEeeeccCccccccHHHHHHHHHHcCCC------ceeeccccccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccH
Q 014691          254 KVFGIIGKPVGHSKSPILYNEAFKSVGFN------GVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDT  327 (420)
Q Consensus       254 ~~~~v~G~pv~hS~SP~ihn~~f~~~gl~------~~y~~~~~~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~  327 (420)
                      ..|++.     |.-+ .+-+-.++..+++      +.|...+-+-++.+++..  .|+..+.+.   -.+|+.++...-.
T Consensus        54 EiY~~~-----~~~~-~~~~~l~~~~~~~~~~l~~~~~v~~~~~Av~HLfrVA--sGLDSmVlG---E~QILGQVK~Ay~  122 (414)
T COG0373          54 EIYAVV-----HTGS-ELIRFLAELHGLSIEDLGKYLYVLRGEEAVRHLFRVA--SGLDSLVLG---ETQILGQVKDAYA  122 (414)
T ss_pred             EEEEEe-----cccc-chhHHHHHhcCCChhhhccCeEEEcCHHHHHHHHHHh--ccchhhhcC---cHHHHHHHHHHHH
Confidence            455555     4444 4445555566654      234444434455555443  233433333   3578999999888


Q ss_pred             HHHHhcceeEEEEec-----------cCCeEEEEecCHHHHHHH--HHhhhccCCCCCCCcccccCCCEEEEEccchHHH
Q 014691          328 VAKSIGAVNCIIRRQ-----------SDGKLFGYNTDYVGAISA--IEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGK  394 (420)
Q Consensus       328 ~A~~iGAvNTi~~~~-----------~~g~l~G~NTD~~G~~~~--l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaar  394 (420)
                      .|+.-|.+.+++.+-           ++.+-+|.|-=.++....  .++.+           .+++++++||||||.|+.
T Consensus       123 ~a~~~g~~g~~L~~lFqkAi~~gKrvRseT~I~~~~VSi~saAv~lA~~~~-----------~~L~~~~vlvIGAGem~~  191 (414)
T COG0373         123 KAQENGTLGKVLNRLFQKAISVGKRVRSETGIGKGAVSISSAAVELAKRIF-----------GSLKDKKVLVIGAGEMGE  191 (414)
T ss_pred             HHHHcCCchHHHHHHHHHHHHHHHHhhcccCCCCCccchHHHHHHHHHHHh-----------cccccCeEEEEcccHHHH
Confidence            999988888776440           122235555555554332  12222           348899999999999999


Q ss_pred             HHHHHHHhCCC-eEEEEeCChhhhhcC
Q 014691          395 ALAYGAKAKGA-RVVIANRTYENLQRL  420 (420)
Q Consensus       395 a~~~aL~~~g~-~i~v~nR~~~ka~~L  420 (420)
                      .++.+|...|+ +|+|+|||.+||++|
T Consensus       192 lva~~L~~~g~~~i~IaNRT~erA~~L  218 (414)
T COG0373         192 LVAKHLAEKGVKKITIANRTLERAEEL  218 (414)
T ss_pred             HHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence            99999999998 999999999999864

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.91  E-value=2e-05  Score=75.02  Aligned_cols=53  Identities=26%  Similarity=0.313  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC---eEEEEeCC----hhhh
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA---RVVIANRT----YENL  417 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~---~i~v~nR~----~~ka  417 (420)
                      ..||+.+++..           +.++++++++|+||||+|+++++.|...|+   +|+++||+    .+|+
T Consensus         9 lAG~~~al~~~-----------g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~   68 (226)
T cd05311           9 LAGLLNALKLV-----------GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGRE   68 (226)
T ss_pred             HHHHHHHHHHh-----------CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccc
Confidence            35788887653           146789999999999999999999999997   59999999    5654

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.51  E-value=0.00017  Score=66.54  Aligned_cols=64  Identities=36%  Similarity=0.453  Sum_probs=49.6

Q ss_pred             EEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          349 GYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       349 G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      |-||-....+..+++.+...       +.++++++++|+|+ |++|++++..|.+.|++|++++|+.+++++
T Consensus         3 G~~~ta~aav~~~~~~l~~~-------~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~   67 (194)
T cd01078           3 GSNTTAAAAVAAAGKALELM-------GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQK   67 (194)
T ss_pred             CcHHHHHHHHHHHHHHHHHh-------CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence            44555555566666555321       24678999999996 999999999999999999999999988764

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.36  E-value=0.0012  Score=65.11  Aligned_cols=41  Identities=32%  Similarity=0.481  Sum_probs=38.0

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      ..+.|++++|+|+|++|++++..|..+|++|+++||+.++.
T Consensus       147 ~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~  187 (287)
T TIGR02853       147 FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADL  187 (287)
T ss_pred             CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            46789999999999999999999999999999999998764

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.25  E-value=0.00024  Score=71.18  Aligned_cols=91  Identities=10%  Similarity=0.027  Sum_probs=62.2

Q ss_pred             hHHHHhhhhcccHHHHHhcceeEEEEec-----------cCCeEEEEecCHHHHHH-HHHhhhccCCCCCCCcccccCCC
Q 014691          315 KEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----------SDGKLFGYNTDYVGAIS-AIEDGLRGRLNVSGGVSSALAGK  382 (420)
Q Consensus       315 K~~i~~~~d~l~~~A~~iGAvNTi~~~~-----------~~g~l~G~NTD~~G~~~-~l~~~~~~~~~~~~~~~~~~~~k  382 (420)
                      -.+|+.++.+.-..|+..|++..++.+-           .+.+-+|.+-=..+.+. .+.+.+           .++++|
T Consensus       107 E~QIlGQVK~Ay~~A~~~g~~g~~L~~lf~~A~~~aKrVRteT~I~~~~vSv~s~av~~~~~~-----------~~l~~k  175 (338)
T PRK00676        107 ETEIQGQVKRAYLKAARERKLPFALHFLFQKALKEGKVFRSKGGAPYAEVTIESVVQQELRRR-----------QKSKKA  175 (338)
T ss_pred             cHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHHHh-----------CCccCC
Confidence            4567888888888888887776554320           12222344433344331 111111           357899


Q ss_pred             EEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhh
Q 014691          383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYEN  416 (420)
Q Consensus       383 ~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~k  416 (420)
                      ++||||+|.+|+.++.+|.+.|+ +|+|+|||.++
T Consensus       176 ~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~  210 (338)
T PRK00676        176 SLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT  210 (338)
T ss_pred             EEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence            99999999999999999999998 89999999643

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.20  E-value=0.0012  Score=52.84  Aligned_cols=53  Identities=32%  Similarity=0.523  Sum_probs=42.3

Q ss_pred             CHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeC
Q 014691          353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR  412 (420)
Q Consensus       353 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR  412 (420)
                      .+.|.+..|++....       .+.++++++++|+|+|++|+.++..|.+.|. +|+++||
T Consensus         2 t~~~~~~~l~~~~~~-------~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191           2 TAAGAVALLKAAGKV-------TNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             hhHHHHHHHHHHHHH-------hCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            356777777765431       1245789999999999999999999999965 9999998

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.14  E-value=0.0012  Score=59.89  Aligned_cols=40  Identities=35%  Similarity=0.424  Sum_probs=35.8

Q ss_pred             cccCCCEEEEEccchH-HHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGA-GKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGa-ara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      .+++||+++|+|+|++ |+.++..|...|++|+++||+.+.
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~   80 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKN   80 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchh
Confidence            4689999999999996 888999999999999999998654

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PLN00203 glutamyl-tRNA reductase

Probab=97.09  E-value=0.00059  Score=72.47  Aligned_cols=97  Identities=22%  Similarity=0.243  Sum_probs=66.0

Q ss_pred             hHHHHhhhhcccHHHHHhcceeEEEEec-----------cCCeEEEEecCHHHH--HHHHHhhhccCCCCCCCcccccCC
Q 014691          315 KEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----------SDGKLFGYNTDYVGA--ISAIEDGLRGRLNVSGGVSSALAG  381 (420)
Q Consensus       315 K~~i~~~~d~l~~~A~~iGAvNTi~~~~-----------~~g~l~G~NTD~~G~--~~~l~~~~~~~~~~~~~~~~~~~~  381 (420)
                      -.+|+.++.+.-..|+..|+++.++.+-           .+.+-+|.+-=..+.  +...++.++         ..++.+
T Consensus       196 E~QIlgQVK~A~~~A~~~g~~g~~L~~LF~~Ai~~~KrVRteT~I~~~~vSv~s~Av~la~~~~~---------~~~l~~  266 (519)
T PLN00203        196 EGQILAQVKQVVKVGQGVDGFGRNLSGLFKHAITAGKRVRTETNIASGAVSVSSAAVELALMKLP---------ESSHAS  266 (519)
T ss_pred             ChHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHHHHHHhcC---------CCCCCC
Confidence            3568888888888888888877665430           111223333332332  221222221         024778


Q ss_pred             CEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhhcC
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQRL  420 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~~L  420 (420)
                      ++++|||+|++|++++..|...|+ +|+|+||+.++++.|
T Consensus       267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~L  306 (519)
T PLN00203        267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAAL  306 (519)
T ss_pred             CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence            999999999999999999999998 899999999998753

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.08  E-value=0.0013  Score=61.34  Aligned_cols=61  Identities=26%  Similarity=0.356  Sum_probs=48.3

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      ++|.+.+++..+....     .+.+++||+++|+|.|.+|+.++..|.+.|++|++++++.++.++
T Consensus         6 g~Gv~~~~~~~~~~~~-----~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~   66 (200)
T cd01075           6 AYGVFLGMKAAAEHLL-----GTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVAR   66 (200)
T ss_pred             HHHHHHHHHHHHHHhc-----CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence            5677666666543210     125789999999999999999999999999999999999887653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.03  E-value=0.004  Score=61.21  Aligned_cols=125  Identities=21%  Similarity=0.322  Sum_probs=78.3

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHH--HhhhhcccHHHHHhcceeEEEEeccCC
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i--~~~~d~l~~~A~~iGAvNTi~~~~~~g  345 (420)
                      ....+++|++.....++-    +++.+.++.+ .++...|+-|-.|.-..+  ...++.+++ .+.+-..+..-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p-~KDVDGl~~~n----~g  128 (286)
T PRK14175         54 KKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINP-EKDVDGFHPIN----IG  128 (286)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCcccCCccc----hH
Confidence            446789999987766654    2566677777 467899999999964322  111222221 11111111110    01


Q ss_pred             eEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeCC
Q 014691          346 KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       346 ~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR~  413 (420)
                      +++ |.    -.--.|++..|++.           +.+++||+++|+|.|+ +|+.++..|...|+.|+++++.
T Consensus       129 ~l~~~~~~~~PcTp~ai~~ll~~~-----------~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~  191 (286)
T PRK14175        129 KLYIDEQTFVPCTPLGIMEILKHA-----------DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR  191 (286)
T ss_pred             hHhcCCCCCCCCcHHHHHHHHHHc-----------CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            221 10    11134555555442           2578999999999999 9999999999999999998874

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.79  E-value=0.0078  Score=59.50  Aligned_cols=121  Identities=21%  Similarity=0.263  Sum_probs=78.9

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD---  344 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~---  344 (420)
                      ....+++|++.....++-    +++.+.++.+ .++...|+-|-+|.-.    ++|+.    +.+.+++.-.=-  |   
T Consensus        55 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~----~i~~~----~i~~~I~p~KDV--DGl~  124 (301)
T PRK14194         55 ILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPA----HIDEA----RVLQAINPLKDV--DGFH  124 (301)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCC----CCCHH----HHHhccCchhcc--CccC
Confidence            447888999987666643    3577777777 5678999999999742    23221    112222222100  1   


Q ss_pred             ----CeE-EEEe----cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccc-hHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          345 ----GKL-FGYN----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       345 ----g~l-~G~N----TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaG-Gaara~~~aL~~~g~~i~v~nR~~  414 (420)
                          |++ .|.+    .--.|++.-|+..           +.+++||+++|||.| -+|+.++.-|.+.|+.|+++||+.
T Consensus       125 ~~N~g~l~~~~~~~~PcTp~aii~lL~~~-----------~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t  193 (301)
T PRK14194        125 SENVGGLSQGRDVLTPCTPSGCLRLLEDT-----------CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS  193 (301)
T ss_pred             hhhhhHHhcCCCCCCCCcHHHHHHHHHHh-----------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC
Confidence                111 1111    1145666666543           267899999999997 599999999999999999998753

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.78  E-value=0.0016  Score=64.82  Aligned_cols=97  Identities=27%  Similarity=0.315  Sum_probs=63.7

Q ss_pred             chHHHHhhhhcccHHHHHhcceeEEEEec-----------cCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCC
Q 014691          314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----------SDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGK  382 (420)
Q Consensus       314 ~K~~i~~~~d~l~~~A~~iGAvNTi~~~~-----------~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k  382 (420)
                      -..+|+.++.+.-..|+..|.++.++.+-           ++..-++.+.=..+.. +++.....        ...+.++
T Consensus       109 GE~qIlgQvk~A~~~a~~~g~~~~~L~~lf~~a~~~~k~vr~et~i~~~~~sv~~~-Av~~a~~~--------~~~l~~~  179 (311)
T cd05213         109 GETQILGQVKNAYKLAKEAGTSGKLLNRLFQKAIKVGKRVRTETGISRGAVSISSA-AVELAEKI--------FGNLKGK  179 (311)
T ss_pred             CChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHH-HHHHHHHH--------hCCccCC
Confidence            35678888888888888888877665430           0111122221122322 22221110        0236789


Q ss_pred             EEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhhc
Q 014691          383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQR  419 (420)
Q Consensus       383 ~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~~  419 (420)
                      +++|+|+|.+|+.++..|...|+ +|+++||+.+++++
T Consensus       180 ~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~  217 (311)
T cd05213         180 KVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE  217 (311)
T ss_pred             EEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            99999999999999999998887 89999999988754

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.68  E-value=0.0021  Score=66.63  Aligned_cols=42  Identities=43%  Similarity=0.651  Sum_probs=38.3

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhhc
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQR  419 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~~  419 (420)
                      .+.+++++|+|+|.+|+.++..|...|+ +|+++||+.+++++
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~  219 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAED  219 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            4678999999999999999999999997 99999999988764

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.64  E-value=0.0032  Score=62.36  Aligned_cols=40  Identities=33%  Similarity=0.458  Sum_probs=36.5

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.+++++|||+|++|++++..|..+|++|++++|+.++
T Consensus       148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~  187 (296)
T PRK08306        148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAH  187 (296)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            3567899999999999999999999999999999999765

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=96.40  E-value=0.069  Score=50.10  Aligned_cols=120  Identities=18%  Similarity=0.183  Sum_probs=77.0

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (420)
                      .+...+...+.+++...++.+.+.|+.++|+|.+.-.   ..+.++.+.+..+.++++=.=     ..   -..+   -+
T Consensus        11 ~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~---~~~~i~~l~~~~~~~~~iGaG-----TV---~~~~---~~   76 (206)
T PRK09140         11 PLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPD---PFDSIAALVKALGDRALIGAG-----TV---LSPE---QV   76 (206)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCcc---HHHHHHHHHHHcCCCcEEeEE-----ec---CCHH---HH
Confidence            3555688999999999999999999999999976432   234677776666545443211     11   1122   33


Q ss_pred             HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       105 ~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      +.+++.|++++=. =..+.+..+..   +..+..++.+.|    ||  +|    +.++.+.|+|++|+
T Consensus        77 ~~a~~aGA~fivs-p~~~~~v~~~~---~~~~~~~~~G~~----t~--~E----~~~A~~~Gad~vk~  130 (206)
T PRK09140         77 DRLADAGGRLIVT-PNTDPEVIRRA---VALGMVVMPGVA----TP--TE----AFAALRAGAQALKL  130 (206)
T ss_pred             HHHHHcCCCEEEC-CCCCHHHHHHH---HHCCCcEEcccC----CH--HH----HHHHHHcCCCEEEE
Confidence            5677889988733 12233333322   245778888877    43  23    45566789999997

>PRK06141 ornithine cyclodeaminase; Validated

Probab=96.31  E-value=0.0048  Score=61.58  Aligned_cols=41  Identities=20%  Similarity=0.291  Sum_probs=35.6

Q ss_pred             CCCEEEEEccchHHHHHHHHHHh-CCC-eEEEEeCChhhhhcC
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYENLQRL  420 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~-~g~-~i~v~nR~~~ka~~L  420 (420)
                      ..++++|||+|++|++.+.++.. .+. +|+|+||++++++++
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~  166 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEAL  166 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence            46899999999999999988765 566 899999999998753

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.29  E-value=0.015  Score=52.38  Aligned_cols=42  Identities=38%  Similarity=0.455  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..+.||+++|+|=|..||.+|.+|..+|++|+|+.+++-++-
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~al   60 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRAL   60 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHH
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHH
Confidence            567899999999999999999999999999999999987763

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.23  E-value=0.0053  Score=50.95  Aligned_cols=38  Identities=26%  Similarity=0.316  Sum_probs=32.8

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+++|+++||+|+|.+|..-+..|.+.|++|+|++.+.
T Consensus         3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            46789999999999999999999999999999999984

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.22  E-value=0.028  Score=55.55  Aligned_cols=117  Identities=23%  Similarity=0.253  Sum_probs=76.4

Q ss_pred             HHHHHHcCCCceeeccc--c--ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCCeE
Q 014691          273 NEAFKSVGFNGVFVHLL--V--DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKL  347 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~--~--~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g~l  347 (420)
                      ....+++|++..-..++  +  +++.+.++.+ .++++.|+-|-.|+-.    ++|+.    +.+.+++--.    |  .
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~----~~~~~----~i~~~I~p~K----D--V  119 (296)
T PRK14188         54 GKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPK----HLDSE----AVIQAIDPEK----D--V  119 (296)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC----CCCHH----HHHhccCccc----c--c
Confidence            34688999997544443  3  3677777777 4678999999999742    22221    1112222111    1  1


Q ss_pred             EEEecC----------------HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEc-cchHHHHHHHHHHhCCCeEEEE
Q 014691          348 FGYNTD----------------YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIG-AGGAGKALAYGAKAKGARVVIA  410 (420)
Q Consensus       348 ~G~NTD----------------~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviG-aGGaara~~~aL~~~g~~i~v~  410 (420)
                      -|.+..                -.|++.-|+..           +.+++||+|+||| +|-+|+.++.-|.+.|+.|+++
T Consensus       120 DGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~-----------~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~  188 (296)
T PRK14188        120 DGLHVVNAGRLATGETALVPCTPLGCMMLLRRV-----------HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIA  188 (296)
T ss_pred             ccCChhhHHHHhCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEE
Confidence            112111                45555555442           2578999999999 7779999999999999999999


Q ss_pred             -eCCh
Q 014691          411 -NRTY  414 (420)
Q Consensus       411 -nR~~  414 (420)
                       +||.
T Consensus       189 ~~rT~  193 (296)
T PRK14188        189 HSRTR  193 (296)
T ss_pred             CCCCC
Confidence             4875

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.19  E-value=0.0066  Score=61.98  Aligned_cols=41  Identities=27%  Similarity=0.335  Sum_probs=36.5

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      +.+++++|+|+|++|+.++..|..+|++|++++|+.++++.
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~  205 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQ  205 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHH
Confidence            45678999999999999999999999999999999877553

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=96.14  E-value=0.8  Score=49.62  Aligned_cols=210  Identities=14%  Similarity=0.128  Sum_probs=137.7

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (420)
                      +.++.+.-++...+.|.+.||.-    .|.   +...++.+.++.+++.. +.++..-+|..+--|..+..++-..+.++
T Consensus        19 ~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~   98 (582)
T TIGR01108        19 RTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVK   98 (582)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHH
Confidence            44555555555566799999994    552   22334566677776533 57777778877666765556666677888


Q ss_pred             HHHHhCCcEEEEEccccc--chhHHHhhcCCCCcEEEEEc-ccCCCCC--CHHHHHHHHHHHHHcCCCEEEEEeec--CC
Q 014691          106 LAMELGADYIDVELQVAR--EFNDSIRGKKPEKCKVIVSS-HNYQYTP--SVEDLSNLVARIQASGADIVKFATTA--LD  178 (420)
Q Consensus       106 ~~~~~~~d~iDiEl~~~~--~~~~~l~~~~~~~~kiI~S~-H~f~~tP--~~~el~~~~~~~~~~gaDivKia~~~--~s  178 (420)
                      ++.+.|+|.+-|=...++  .....+...+..+..+.++. +.+  +|  +.+.+.+..+++.+.|||.+-|+=|.  -+
T Consensus        99 ~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~--~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~  176 (582)
T TIGR01108        99 KAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTT--SPVHTLETYLDLAEELLEMGVDSICIKDMAGILT  176 (582)
T ss_pred             HHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEecc--CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcC
Confidence            999999998887654432  22222223344556666542 223  55  66789999999999999999888776  56


Q ss_pred             HHHHHHHHHHhcc-CCCCEEE--EecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691          179 ITDVARVFQITVH-SQVPIIG--LVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (420)
Q Consensus       179 ~~D~~~ll~~~~~-~~~p~I~--~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~  246 (420)
                      +.++.++.+.++. .+.|+-.  .+.--++..+=+.+-.-|....=+++.. -.-..||++++++...++.
T Consensus       177 P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~G-lG~~tGn~~le~vv~~L~~  246 (582)
T TIGR01108       177 PKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAGADGIDTAISS-MSGGTSHPPTETMVAALRG  246 (582)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCEEEecccc-ccccccChhHHHHHHHHHh
Confidence            8899888887654 3556443  4555556666666666666555455543 2346899999888776653

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK08328 hypothetical protein; Provisional

Probab=96.13  E-value=0.0061  Score=58.12  Aligned_cols=37  Identities=30%  Similarity=0.536  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~  414 (420)
                      .+++++|+|+|+||.|..++..|+..|+ ++++++.+.
T Consensus        24 ~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         24 KLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            3567899999999999999999999999 999998764

>PRK07340 ornithine cyclodeaminase; Validated

Probab=96.09  E-value=0.012  Score=58.37  Aligned_cols=41  Identities=22%  Similarity=0.173  Sum_probs=36.1

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHh-CCC-eEEEEeCChhhhhc
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYENLQR  419 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~-~g~-~i~v~nR~~~ka~~  419 (420)
                      ...++++|||+|+.|++.+.++.. .+. +|+|+||+.+++++
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~  165 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAA  165 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHH
Confidence            346899999999999999999975 677 89999999999875

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=96.04  E-value=0.11  Score=49.30  Aligned_cols=154  Identities=17%  Similarity=0.105  Sum_probs=84.0

Q ss_pred             HHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcE
Q 014691           35 VDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADY  114 (420)
Q Consensus        35 ~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~  114 (420)
                      .++..+-++++.+.|+|++=+..-++..      ..... ..+.|++..++...-=|.-..+.+......+.+++.|++.
T Consensus        20 ~~d~~~~~~~~~~~g~~av~v~~~~~~~------~~~~~-~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~Ga~~   92 (235)
T cd00958          20 LEDPEETVKLAAEGGADAVALTKGIARA------YGREY-AGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRLGADA   92 (235)
T ss_pred             ccCHHHHHHHHHhcCCCEEEeChHHHHh------ccccc-CCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHCCCCE
Confidence            3344444455556688888765332221      01111 1245777776632111110223345556688899999999


Q ss_pred             EEEEcccccc-------hhHHHhh-cCCCCcEEEEEcccCCC----CCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHH
Q 014691          115 IDVELQVARE-------FNDSIRG-KKPEKCKVIVSSHNYQY----TPSVEDLSNLVARIQASGADIVKFATTALDITDV  182 (420)
Q Consensus       115 iDiEl~~~~~-------~~~~l~~-~~~~~~kiI~S~H~f~~----tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~  182 (420)
                      ||+.++....       ...++.. .++.+.++|+--|....    .-+.+++....+.+.+.|||++|+-. +.   |.
T Consensus        93 v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~-~~---~~  168 (235)
T cd00958          93 VGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKY-TG---DA  168 (235)
T ss_pred             EEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecC-CC---CH
Confidence            9998865321       2233332 24578899986553110    01234555556677789999999942 22   33


Q ss_pred             HHHHHHhccCCCCEEEE
Q 014691          183 ARVFQITVHSQVPIIGL  199 (420)
Q Consensus       183 ~~ll~~~~~~~~p~I~~  199 (420)
                      ..+-++.+..+.|++++
T Consensus       169 ~~~~~i~~~~~~pvv~~  185 (235)
T cd00958         169 ESFKEVVEGCPVPVVIA  185 (235)
T ss_pred             HHHHHHHhcCCCCEEEe
Confidence            33444444456776554

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=95.95  E-value=0.2  Score=46.18  Aligned_cols=130  Identities=18%  Similarity=0.144  Sum_probs=79.1

Q ss_pred             cEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHH
Q 014691           24 TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVD  102 (420)
Q Consensus        24 ~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~  102 (420)
                      +.||+.|-..+.++...-++.+... +|++|+-+.+..... .+.++.+++. .+.|++.+.-.. +.+       .  .
T Consensus         1 ~~~~~a~d~~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g-~~~i~~i~~~~~~~~i~~~~~v~-~~~-------~--~   68 (202)
T cd04726           1 PLLQVALDLLDLEEALELAKKVPDG-VDIIEAGTPLIKSEG-MEAVRALREAFPDKIIVADLKTA-DAG-------A--L   68 (202)
T ss_pred             CceEEEEcCCCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEEec-ccc-------H--H
Confidence            4689999999999999988876665 999999666543222 2457777665 478888764432 111       1  2


Q ss_pred             HHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          103 VLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       103 ll~~~~~~~~d~iDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      .++.+.+.|++++=+-.....+...++. ..++.+.++++..+.. .||  .+..   + +...|+|++++
T Consensus        69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~-~t~--~e~~---~-~~~~~~d~v~~  132 (202)
T cd04726          69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGV-EDP--EKRA---K-LLKLGVDIVIL  132 (202)
T ss_pred             HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCC-CCH--HHHH---H-HHHCCCCEEEE
Confidence            3467788899988775443322222222 1234567777654422 122  2332   2 55568888887

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.94  E-value=0.017  Score=59.86  Aligned_cols=42  Identities=33%  Similarity=0.419  Sum_probs=37.9

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..+.|++|+|+|.|.+|+.++..|..+|++|+++++++.++.
T Consensus       208 ~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~  249 (425)
T PRK05476        208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICAL  249 (425)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhH
Confidence            346899999999999999999999999999999999987753

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=95.88  E-value=1.6  Score=42.63  Aligned_cols=212  Identities=14%  Similarity=0.074  Sum_probs=127.3

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCC-------CCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGL-------KNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l-------~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (420)
                      +.++.+.-++...+.|+|.||.=.-.-       ...++.+.++.+.+. .+.++..-+|..+.-|..+.+.+-..+.++
T Consensus        19 ~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~   98 (275)
T cd07937          19 RTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVE   98 (275)
T ss_pred             cHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHH
Confidence            344444445555677999999974320       122344556655543 356787778866555544444455667888


Q ss_pred             HHHHhCCcEEEEEccccc-c-hhHHHhhcCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CCHH
Q 014691          106 LAMELGADYIDVELQVAR-E-FNDSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTA--LDIT  180 (420)
Q Consensus       106 ~~~~~~~d~iDiEl~~~~-~-~~~~l~~~~~~~~kiI~S~H~-f~~tP~~~el~~~~~~~~~~gaDivKia~~~--~s~~  180 (420)
                      .+.+.|+++|-|-....+ + ..+.+...+..+.++...... +....+.+.+.+..+++.+.|+|.+-++=+.  -+++
T Consensus        99 ~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~  178 (275)
T cd07937          99 KAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPY  178 (275)
T ss_pred             HHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHH
Confidence            899999999888654432 1 222222334556677665442 2223356789999999999999999998555  4688


Q ss_pred             HHHHHHHHhccC-CCCEEEEecC--CcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691          181 DVARVFQITVHS-QVPIIGLVMG--ERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (420)
Q Consensus       181 D~~~ll~~~~~~-~~p~I~~~MG--~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~  246 (420)
                      ++.++++.+.+. +.|+-..+=-  -++...=+..-..|..+.=+++..- .-..|+.+++++...++.
T Consensus       179 ~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~Gl-G~~aGN~~~E~l~~~L~~  246 (275)
T cd07937         179 AAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPL-SGGTSQPSTESMVAALRG  246 (275)
T ss_pred             HHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccc-cCCcCChhHHHHHHHHHc
Confidence            998888876542 4555443321  2222333333334544443444431 234899999888766653

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=95.84  E-value=0.013  Score=47.35  Aligned_cols=37  Identities=41%  Similarity=0.557  Sum_probs=32.8

Q ss_pred             EEEEEccchHHHHHHHHHHhCC---CeEEEE-eCChhhhhc
Q 014691          383 LFVVIGAGGAGKALAYGAKAKG---ARVVIA-NRTYENLQR  419 (420)
Q Consensus       383 ~vlviGaGGaara~~~aL~~~g---~~i~v~-nR~~~ka~~  419 (420)
                      ++.+||+|.+|.+++..|.+.|   .+|+++ +|+++++++
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~   41 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAE   41 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHH
Confidence            4778999999999999999999   589966 999998865

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.81  E-value=0.011  Score=55.06  Aligned_cols=37  Identities=19%  Similarity=0.395  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      ..++.++|+|+|+||+|..++..|+..|+ ++++++++
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            34667899999999999999999999999 89999998

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.73  E-value=0.013  Score=54.70  Aligned_cols=36  Identities=31%  Similarity=0.487  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      .+++++|+|+|+||.|..++..|+..|+ ++++++++
T Consensus        18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            3567899999999999999999999999 99999987

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=95.73  E-value=0.21  Score=46.05  Aligned_cols=119  Identities=23%  Similarity=0.291  Sum_probs=69.5

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (420)
                      .++..+.+.+.+++...++.+.+.|++++|+|...-.   ..+.++.+.+..+- +.+.      +|.. .+ .++   +
T Consensus         5 ~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~---~~~~i~~l~~~~~~-~~iG------ag~v-~~-~~~---~   69 (190)
T cd00452           5 PLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPG---ALEAIRALRKEFPE-ALIG------AGTV-LT-PEQ---A   69 (190)
T ss_pred             cEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChh---HHHHHHHHHHHCCC-CEEE------EEeC-CC-HHH---H
Confidence            3555689999999999999999999999999976322   23345555544431 2222      1221 11 222   3


Q ss_pred             HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       105 ~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      +.++..|+++|=.- ....+..+..   +..+.++|.-..    ||  +|    ..++.+.|||++|+
T Consensus        70 ~~a~~~Ga~~i~~p-~~~~~~~~~~---~~~~~~~i~gv~----t~--~e----~~~A~~~Gad~i~~  123 (190)
T cd00452          70 DAAIAAGAQFIVSP-GLDPEVVKAA---NRAGIPLLPGVA----TP--TE----IMQALELGADIVKL  123 (190)
T ss_pred             HHHHHcCCCEEEcC-CCCHHHHHHH---HHcCCcEECCcC----CH--HH----HHHHHHCCCCEEEE
Confidence            45677889988321 1222232222   234566766443    22  33    34445689999998

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.72  E-value=0.023  Score=58.79  Aligned_cols=42  Identities=33%  Similarity=0.444  Sum_probs=37.9

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..+.|++|+|+|+|..|+.++..+..+|++|+++++++.|++
T Consensus       198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~  239 (413)
T cd00401         198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICAL  239 (413)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHH
Confidence            456899999999999999999999999999999999987754

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.71  E-value=0.012  Score=58.91  Aligned_cols=40  Identities=28%  Similarity=0.422  Sum_probs=34.9

Q ss_pred             CCCEEEEEccchHHHHHHHHHH-hCCC-eEEEEeCChhhhhc
Q 014691          380 AGKLFVVIGAGGAGKALAYGAK-AKGA-RVVIANRTYENLQR  419 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~-~~g~-~i~v~nR~~~ka~~  419 (420)
                      ..++++|||+|+.|++.+.++. ..++ +|+|+||+++++++
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~  167 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYA  167 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHH
Confidence            3578999999999999998875 4588 99999999999875

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.63  E-value=0.011  Score=60.45  Aligned_cols=35  Identities=31%  Similarity=0.426  Sum_probs=32.6

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      +++++|+|+|+||.|..++..|+..|+ ++++++++
T Consensus       133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            356789999999999999999999999 99999997

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.60  E-value=0.015  Score=55.74  Aligned_cols=36  Identities=22%  Similarity=0.333  Sum_probs=33.0

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~  414 (420)
                      +++++|+|+|+||.|..++..|+..|+ ++++++.+.
T Consensus        22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            557899999999999999999999999 999999864

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK05866 short chain dehydrogenase; Provisional

Probab=95.52  E-value=0.021  Score=56.14  Aligned_cols=43  Identities=35%  Similarity=0.448  Sum_probs=37.7

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.+++++
T Consensus        36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~   79 (293)
T PRK05866         36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDA   79 (293)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            4567899999996 889999999999999999999999877543

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.52  E-value=0.053  Score=53.29  Aligned_cols=121  Identities=22%  Similarity=0.262  Sum_probs=76.7

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEe----c-
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRR----Q-  342 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~----~-  342 (420)
                      ...++++|++.....++.    +++.+.++.+ .+++..|+-|-.|.-..    +|+   . +.+.+++...=-    + 
T Consensus        54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~----i~~---~-~i~~~I~p~KDVDGl~~~  125 (285)
T PRK14189         54 VKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKH----IDS---H-KVIEAIAPEKDVDGFHVA  125 (285)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCC----CCH---H-HHHhhcCcccCcccCChh
Confidence            447899999987666653    3677777777 46779999999997532    221   1 111222211100    0 


Q ss_pred             cCCeEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchH-HHHHHHHHHhCCCeEEEEeC
Q 014691          343 SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGA-GKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       343 ~~g~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGa-ara~~~aL~~~g~~i~v~nR  412 (420)
                      .-|+++ |.    -.--.|++.-|+..           +.+++||+|+|+|.|+. |+.++.-|...|+.|+++.+
T Consensus       126 n~g~l~~~~~~~~PcTp~aii~lL~~~-----------~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs  190 (285)
T PRK14189        126 NAGALMTGQPLFRPCTPYGVMKMLESI-----------GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHS  190 (285)
T ss_pred             hhhHhhCCCCCCcCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecC
Confidence            001111 11    11145566655543           26789999999999996 99999999999999988874

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.51  E-value=0.018  Score=54.27  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      .++.++|+|+|+||+|..++..|+..|+ ++++++.+
T Consensus        25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4667899999999999999999999999 89999987

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.49  E-value=0.03  Score=51.07  Aligned_cols=42  Identities=36%  Similarity=0.419  Sum_probs=36.6

Q ss_pred             ccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       376 ~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      ...+.|+++.|+|.|..|++++..|..+|++|+.++|+....
T Consensus        31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~   72 (178)
T PF02826_consen   31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPE   72 (178)
T ss_dssp             BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHH
T ss_pred             ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChh
Confidence            367889999999999999999999999999999999987643

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=95.45  E-value=0.62  Score=44.16  Aligned_cols=138  Identities=18%  Similarity=0.201  Sum_probs=85.0

Q ss_pred             EEeec--CCCHHHHHHHHHhhhhcCCCEE--EEEecCCCCCCchhHHHHHH---hhCCCcEEEEeccCCCCCCCC--CCH
Q 014691           27 CVPIM--GESVDKMVVDMGKANASGADLV--EIRLDGLKNFNPRENIKTLI---KESPVPTLFTYRPIWEGGQYD--GDE   97 (420)
Q Consensus        27 cv~l~--~~~~~e~~~~~~~~~~~~~D~v--ElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~--~~~   97 (420)
                      |+++.  .++.+....+++++...|+|.+  .+|.-.+......+.+..++   +...+|+|+....  +|....  .++
T Consensus        65 ~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~--~g~~~~~~~~~  142 (235)
T cd00958          65 STSLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYP--RGPAVKNEKDP  142 (235)
T ss_pred             CCCCCCCCCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEec--cCCcccCccCH
Confidence            34444  4677777888888889999988  77765443211122344443   3468999987654  232221  233


Q ss_pred             HHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 014691           98 NERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIV  170 (420)
Q Consensus        98 ~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDiv  170 (420)
                      ++.....+.+.+.|+|||=+....+.+.++++...  -...|+++=..  +..+.++..+.++++.+.|++-+
T Consensus       143 ~~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~--~~~pvv~~GG~--~~~~~~~~l~~~~~~~~~Ga~gv  211 (235)
T cd00958         143 DLIAYAARIGAELGADIVKTKYTGDAESFKEVVEG--CPVPVVIAGGP--KKDSEEEFLKMVYDAMEAGAAGV  211 (235)
T ss_pred             HHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHhc--CCCCEEEeCCC--CCCCHHHHHHHHHHHHHcCCcEE
Confidence            33333466788899999999654444555666532  34556666321  22356678888899999999855

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=95.40  E-value=0.5  Score=46.51  Aligned_cols=84  Identities=26%  Similarity=0.408  Sum_probs=58.2

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecC---------C-CCCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCC
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDG---------L-KNFNP-RENIKTLIKESPVPTLFTYRPIWEGGQY   93 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~---------l-~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~   93 (420)
                      .+.+.|.+.+.++...-++.+.+.|+|.||+=+-+         + .+.+. .+.++.+++..++|+.+-++..      
T Consensus        91 p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~------  164 (296)
T cd04740          91 PVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPN------  164 (296)
T ss_pred             cEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCC------
Confidence            36689999999999998888888899999995432         1 11110 1234444444588998887631      


Q ss_pred             CCCHHHHHHHHHHHHHhCCcEEEE
Q 014691           94 DGDENERVDVLRLAMELGADYIDV  117 (420)
Q Consensus        94 ~~~~~~~~~ll~~~~~~~~d~iDi  117 (420)
                         .++-.++.+.+.+.|+|+|++
T Consensus       165 ---~~~~~~~a~~~~~~G~d~i~~  185 (296)
T cd04740         165 ---VTDIVEIARAAEEAGADGLTL  185 (296)
T ss_pred             ---chhHHHHHHHHHHcCCCEEEE
Confidence               124556777888899999987

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.39  E-value=0.077  Score=52.18  Aligned_cols=124  Identities=22%  Similarity=0.325  Sum_probs=77.4

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHH--HhhhhcccHHHHHhcceeEEEEeccCC
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i--~~~~d~l~~~A~~iGAvNTi~~~~~~g  345 (420)
                      ...++++|++.....++.    +++...++.+ .++++.|+-|-.|....+  ...++.+++ .+.+-..+.. +   -|
T Consensus        60 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p-~KDVDGl~~~-N---~g  134 (287)
T PRK14176         60 HKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDP-AKDADGFHPY-N---MG  134 (287)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCc-cccccccChh-h---hh
Confidence            457899999987766653    3677777777 567899999999975322  111111111 0111111100 0   01


Q ss_pred             eEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691          346 KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       346 ~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR  412 (420)
                      +++ |.    -.--.|++..|+..           +.+++||+|+|+|.|. +|+.++.-|...|+.|++++.
T Consensus       135 ~l~~g~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs  196 (287)
T PRK14176        135 KLMIGDEGLVPCTPHGVIRALEEY-----------GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHV  196 (287)
T ss_pred             hHhcCCCCCCCCcHHHHHHHHHHc-----------CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEec
Confidence            111 11    11245566665543           2678999999999999 999999999999999999884

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.38  E-value=0.02  Score=57.82  Aligned_cols=37  Identities=32%  Similarity=0.529  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~  414 (420)
                      .+++++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus        21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            4667899999999999999999999999 999999974

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=95.36  E-value=3.5  Score=43.29  Aligned_cols=211  Identities=14%  Similarity=0.123  Sum_probs=134.3

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (420)
                      +.++.+.-++...+.|.+.||.-    .|.   |...++.+.++.+++. .+.++..-+|..+--|..+.+++-..+.++
T Consensus        24 ~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~  103 (448)
T PRK12331         24 TTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQ  103 (448)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHH
Confidence            34444444455556799999994    442   2233456667777654 345665558877666766666777778899


Q ss_pred             HHHHhCCcEEEEEcccccc-hhHHHh-hcCCCCcEEE--EEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CCH
Q 014691          106 LAMELGADYIDVELQVARE-FNDSIR-GKKPEKCKVI--VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA--LDI  179 (420)
Q Consensus       106 ~~~~~~~d~iDiEl~~~~~-~~~~l~-~~~~~~~kiI--~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~--~s~  179 (420)
                      ++++.|+++|-|=...++- .+.... .+++.+..+.  +|+-+ ..--+.+.+.+..+++.+.|||.+-|+=|.  -++
T Consensus       104 ~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~-~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P  182 (448)
T PRK12331        104 KSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTT-SPVHTIDYFVKLAKEMQEMGADSICIKDMAGILTP  182 (448)
T ss_pred             HHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeec-CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCH
Confidence            9999999998886554321 122222 2333454443  44432 211155778999999999999999998776  468


Q ss_pred             HHHHHHHHHhcc-CCCCEEEE--ecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691          180 TDVARVFQITVH-SQVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (420)
Q Consensus       180 ~D~~~ll~~~~~-~~~p~I~~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~  246 (420)
                      .++.++.+.++. .+.|+-..  +.--+|..+=+..-.-|....=+++..- +...||++.+++...++.
T Consensus       183 ~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~gl-g~gaGN~~tE~lv~~L~~  251 (448)
T PRK12331        183 YVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPF-AGGTSQPATESMVAALQD  251 (448)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeecccc-CCCcCCHhHHHHHHHHHh
Confidence            899888887654 35665543  3444555555555556665555555532 234789999998877764

>PRK14982 acyl-ACP reductase; Provisional

Probab=95.36  E-value=0.022  Score=57.37  Aligned_cols=43  Identities=30%  Similarity=0.439  Sum_probs=37.3

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHh-CCC-eEEEEeCChhhhhc
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKA-KGA-RVVIANRTYENLQR  419 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~-~g~-~i~v~nR~~~ka~~  419 (420)
                      .++++|+|+|+|| |.+|+.++..|.. .|+ +++++||+.++++.
T Consensus       151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~  196 (340)
T PRK14982        151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQE  196 (340)
T ss_pred             cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHH
Confidence            4688999999999 6799999999975 477 99999999888765

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=95.35  E-value=0.4  Score=44.44  Aligned_cols=131  Identities=18%  Similarity=0.142  Sum_probs=84.4

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDV  103 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~l  103 (420)
                      ++||.+-..+.++.+.-++.+ ..+.|+||+-.-++.... .+.++.+++.. +.++++....- +-|       .+  .
T Consensus         1 ~l~~alD~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~-d~~-------~~--~   68 (206)
T TIGR03128         1 KLQLALDLLDIEEALELAEKV-ADYVDIIEIGTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTM-DAG-------EY--E   68 (206)
T ss_pred             CeEEEecCCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeec-cch-------HH--H
Confidence            478899999999999988876 778999999544443322 34677777653 55677665532 111       11  3


Q ss_pred             HHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 014691          104 LRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA  173 (420)
Q Consensus       104 l~~~~~~~~d~iDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia  173 (420)
                      .+.+.+.|+|+|-+-.......+.++. ..++.+.++++..++.. |     ..+....+.+.|+|++|+-
T Consensus        69 ~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~-t-----~~~~~~~~~~~g~d~v~~~  133 (206)
T TIGR03128        69 AEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVK-D-----KVKRAKELKELGADYIGVH  133 (206)
T ss_pred             HHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCC-C-----hHHHHHHHHHcCCCEEEEc
Confidence            566788899999876655432222333 22456889998766431 2     3344555667799999883

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.35  E-value=0.083  Score=51.93  Aligned_cols=120  Identities=20%  Similarity=0.271  Sum_probs=77.9

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCC--
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG--  345 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g--  345 (420)
                      ...++++|++.....++.    +++.+.++.+ .+++..|+-|-.|....    +|+.    +.+.+++.-.=-  ||  
T Consensus        55 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~----~~~~----~i~~~I~p~KDV--DGl~  124 (285)
T PRK10792         55 RKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAH----IDNV----KVLERIHPDKDV--DGFH  124 (285)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCHH----HHHhccCccccc--CccC
Confidence            457889999987666643    3677777777 46779999999997532    2221    122222222100  11  


Q ss_pred             -----eE-EEE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeCC
Q 014691          346 -----KL-FGY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       346 -----~l-~G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR~  413 (420)
                           ++ .|.    -.--.|++..|+..           +.+++||+++|+|-|. +|+.++.-|...|+.|+++.+.
T Consensus       125 ~~n~g~l~~~~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~  192 (285)
T PRK10792        125 PYNVGRLAQRIPLLRPCTPRGIMTLLERY-----------GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF  192 (285)
T ss_pred             hhhHhHHhCCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC
Confidence                 11 111    11245566665543           2678999999999999 9999999999999999998864

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.31  E-value=0.024  Score=54.54  Aligned_cols=36  Identities=25%  Similarity=0.352  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      .+++++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus        29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            3567899999999999999999999999 99999875

>PRK12330 oxaloacetate decarboxylase; Provisional

Probab=95.29  E-value=2.9  Score=44.39  Aligned_cols=211  Identities=16%  Similarity=0.092  Sum_probs=135.7

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (420)
                      +.+|++.-++..-+.|.+.||.=    .|-   +...+|.+.++.+++.. +.|+-.-+|..+==|..+.+++-....++
T Consensus        25 ~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~  104 (499)
T PRK12330         25 AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVE  104 (499)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHH
Confidence            45566665555556799999996    663   22235667787777654 57777778976666666667777778899


Q ss_pred             HHHHhCCcEEEEEccccc-chhHHHh-hcCCCCcEE--EEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CCH
Q 014691          106 LAMELGADYIDVELQVAR-EFNDSIR-GKKPEKCKV--IVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA--LDI  179 (420)
Q Consensus       106 ~~~~~~~d~iDiEl~~~~-~~~~~l~-~~~~~~~ki--I~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~--~s~  179 (420)
                      .+.+.|+|.+-|=...++ +.++... ..++.+..+  -++|-. ..--+.+.+.+..+++.+.|||.+-|+=|+  -++
T Consensus       105 ~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~-sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P  183 (499)
T PRK12330        105 KSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTV-SPIHTVEGFVEQAKRLLDMGADSICIKDMAALLKP  183 (499)
T ss_pred             HHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEec-CCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCH
Confidence            999999999888544432 1122211 122223222  334411 101145678999999999999999988776  478


Q ss_pred             HHHHHHHHHhccC---CCCEEEEe--cCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691          180 TDVARVFQITVHS---QVPIIGLV--MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (420)
Q Consensus       180 ~D~~~ll~~~~~~---~~p~I~~~--MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~  246 (420)
                      .++.++.+.++..   +.|+-..+  .--++..+=+.+---|....=+++.. -+-++||++.+++...++.
T Consensus       184 ~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~G-lg~~aGn~atE~vv~~L~~  254 (499)
T PRK12330        184 QPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISS-MSLGPGHNPTESLVEMLEG  254 (499)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeeccc-ccccccchhHHHHHHHHHh
Confidence            9999888877543   46766443  33344455555555565554455554 2467899999998877764

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=95.28  E-value=0.16  Score=46.94  Aligned_cols=119  Identities=20%  Similarity=0.168  Sum_probs=66.9

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (420)
                      .++..+...+.+++...++.+.+.|+.++|+|......   .+.++.+.+..  |.+ ...    +|.. ... ++   +
T Consensus        13 ~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~---~e~~~~~~~~~--~~~-~~g----~gtv-l~~-d~---~   77 (187)
T PRK07455         13 RAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQP---AELISQLREKL--PEC-IIG----TGTI-LTL-ED---L   77 (187)
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCH---HHHHHHHHHhC--CCc-EEe----EEEE-EcH-HH---H
Confidence            35556899999999999999999999999999875432   23344333322  321 010    1221 122 33   4


Q ss_pred             HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       105 ~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      +.|++.|+++|=+-- ..++..+ .... .+--.++. .|    ||+  |    +.++.+.|+|++|+
T Consensus        78 ~~A~~~gAdgv~~p~-~~~~~~~-~~~~-~~~~~i~G-~~----t~~--e----~~~A~~~Gadyv~~  131 (187)
T PRK07455         78 EEAIAAGAQFCFTPH-VDPELIE-AAVA-QDIPIIPG-AL----TPT--E----IVTAWQAGASCVKV  131 (187)
T ss_pred             HHHHHcCCCEEECCC-CCHHHHH-HHHH-cCCCEEcC-cC----CHH--H----HHHHHHCCCCEEEE
Confidence            467778999972211 1122222 1111 12234454 55    432  3    44555689999998

>cd00945 Aldolase_Class_I Class I aldolases

Probab=95.24  E-value=2.2  Score=38.52  Aligned_cols=152  Identities=16%  Similarity=0.152  Sum_probs=90.2

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh--C-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHh
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE--S-PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL  110 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~--~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~  110 (420)
                      +.+.+...++.+.+.|+|.+++--         +.++.+.+.  . +.|+++.+-...  +.  ..-++-.+..+.+.+.
T Consensus        11 d~~~~~~~~~~~~~~gv~gi~~~g---------~~i~~~~~~~~~~~~~v~~~v~~~~--~~--~~~~~~~~~a~~a~~~   77 (201)
T cd00945          11 TLEDIAKLCDEAIEYGFAAVCVNP---------GYVRLAADALAGSDVPVIVVVGFPT--GL--TTTEVKVAEVEEAIDL   77 (201)
T ss_pred             CHHHHHHHHHHHHHhCCcEEEECH---------HHHHHHHHHhCCCCCeEEEEecCCC--CC--CcHHHHHHHHHHHHHc
Confidence            677777777777888999999875         233333332  2 588887665322  11  2245677888999999


Q ss_pred             CCcEEEEEcccc-------c---chhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecC---
Q 014691          111 GADYIDVELQVA-------R---EFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL---  177 (420)
Q Consensus       111 ~~d~iDiEl~~~-------~---~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~---  177 (420)
                      |+|.+.+-....       +   +.++.+...-+.+..+++- +.-..+.+.+++.+..+.+...|+|.+|......   
T Consensus        78 Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy-~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~  156 (201)
T cd00945          78 GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVI-LETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGG  156 (201)
T ss_pred             CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEE-EECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCC
Confidence            999999864431       1   2333343221134555543 3322233456677776667788999999876422   


Q ss_pred             -CHHHHHHHHHHhccCCCCEEEEe
Q 014691          178 -DITDVARVFQITVHSQVPIIGLV  200 (420)
Q Consensus       178 -s~~D~~~ll~~~~~~~~p~I~~~  200 (420)
                       +.+++..+.+... .+.|++..+
T Consensus       157 ~~~~~~~~i~~~~~-~~~~v~~~g  179 (201)
T cd00945         157 ATVEDVKLMKEAVG-GRVGVKAAG  179 (201)
T ss_pred             CCHHHHHHHHHhcc-cCCcEEEEC
Confidence             5555555544432 134555443

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK06196 oxidoreductase; Provisional

Probab=95.23  E-value=0.028  Score=55.55  Aligned_cols=42  Identities=26%  Similarity=0.408  Sum_probs=37.3

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .++++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++
T Consensus        22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~   64 (315)
T PRK06196         22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAR   64 (315)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            3567899999997 88999999999999999999999987764

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.16  E-value=0.026  Score=53.55  Aligned_cols=36  Identities=28%  Similarity=0.418  Sum_probs=32.4

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      .+.+++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus        18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            3557899999999999999999999999 99999765

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02780 ketoreductase/ oxidoreductase

Probab=95.13  E-value=0.026  Score=56.27  Aligned_cols=40  Identities=30%  Similarity=0.526  Sum_probs=36.0

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      .|+.++|.|| ||.|++++..|++.|++|.+++|+.++.++
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~   92 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKD   92 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHH
Confidence            5889999996 889999999999999999999999887653

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.10  E-value=0.028  Score=56.76  Aligned_cols=37  Identities=38%  Similarity=0.518  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~  414 (420)
                      .++.++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus        21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            3567899999999999999999999999 999999874

>TIGR00936 ahcY adenosylhomocysteinase

Probab=95.08  E-value=0.052  Score=56.05  Aligned_cols=41  Identities=37%  Similarity=0.477  Sum_probs=37.3

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      ..+.|++|+|+|.|..|+.++..+..+|++|+++++++.++
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~  231 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRA  231 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhH
Confidence            34689999999999999999999999999999999988764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.04  E-value=0.03  Score=54.62  Aligned_cols=36  Identities=22%  Similarity=0.357  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      .+++++|+|+|+||+|..++.+|+..|+ +|+|++.+
T Consensus        27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            4678899999999999999999999998 99999865

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.01  E-value=0.14  Score=50.23  Aligned_cols=119  Identities=17%  Similarity=0.248  Sum_probs=77.6

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD---  344 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~---  344 (420)
                      -..++++|++.....++.    +++.+.++.+ .++...|+-|-+|+...    +|+.    +.+.+++...=-  |   
T Consensus        53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~----i~~~----~i~~~I~p~KDV--DGl~  122 (282)
T PRK14180         53 EKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAH----INKN----NVIYSIKPEKDV--DGFH  122 (282)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----CCHH----HHHhhcCccccc--cccC
Confidence            346899999987766554    3577777777 56779999999997532    2211    122222222111  1   


Q ss_pred             ----CeE-EEEe-----cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691          345 ----GKL-FGYN-----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       345 ----g~l-~G~N-----TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR  412 (420)
                          |++ .|.+     .--.|++.-|+..           +.+++||+++|+|.+. +|+-++.-|.+.|+.|+++.+
T Consensus       123 ~~n~g~l~~g~~~~~~PcTp~aii~lL~~y-----------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs  190 (282)
T PRK14180        123 PTNVGRLQLRDKKCLESCTPKGIMTMLREY-----------GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHR  190 (282)
T ss_pred             hhhHHHHhcCCCCCcCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcC
Confidence                111 2211     1245556655543           2578999999999877 999999999999999999875

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.94  E-value=0.24  Score=48.72  Aligned_cols=119  Identities=22%  Similarity=0.298  Sum_probs=76.0

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD---  344 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~---  344 (420)
                      ....+++|++.....++-    +++.+.++.+ .++.+.|+-|-.|...    ++|+.    +.+.+++.-.=-  |   
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~----~i~~~----~i~~~I~p~KDV--DGl~  122 (285)
T PRK14191         53 IKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPR----HIDTK----MVLEAIDPNKDV--DGFH  122 (285)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCHH----HHHhcCCccccc--cccC
Confidence            457889999987666653    3677777777 4678999999999752    22221    111222211100  1   


Q ss_pred             ----CeE-EEEe----cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccc-hHHHHHHHHHHhCCCeEEEEeC
Q 014691          345 ----GKL-FGYN----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       345 ----g~l-~G~N----TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaG-Gaara~~~aL~~~g~~i~v~nR  412 (420)
                          |++ .|.+    .--.|++.-|+..           +.+++||+|+|||.| -+|+.++.-|.+.|+.|+++..
T Consensus       123 ~~n~g~l~~g~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs  189 (285)
T PRK14191        123 PLNIGKLCSQLDGFVPATPMGVMRLLKHY-----------HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHI  189 (285)
T ss_pred             hhhHHHHhcCCCCCCCCcHHHHHHHHHHh-----------CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeC
Confidence                111 1111    1244555555443           267899999999999 6999999999999999888763

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=94.90  E-value=1  Score=41.67  Aligned_cols=108  Identities=26%  Similarity=0.320  Sum_probs=62.7

Q ss_pred             HHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHH---HhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 014691           36 DKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTL---IKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA  112 (420)
Q Consensus        36 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l---~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~  112 (420)
                      +++..+++.+...|+|+|++|.-.+...+....++.+   ....+.|+++.                  +.++.+.+.|+
T Consensus        21 ~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~~~~a~~~ga   82 (212)
T PRK00043         21 RDLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVN------------------DRVDLALAVGA   82 (212)
T ss_pred             ccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe------------------ChHHHHHHcCC
Confidence            4566677777888999999997544321111122222   23346777753                  12456677899


Q ss_pred             cEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 014691          113 DYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA  173 (420)
Q Consensus       113 d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia  173 (420)
                      ++|=+......  ...+...+..+.++-+|.|    |  .+|+    .+....|+|++++-
T Consensus        83 d~vh~~~~~~~--~~~~~~~~~~~~~~g~~~~----t--~~e~----~~a~~~gaD~v~~~  131 (212)
T PRK00043         83 DGVHLGQDDLP--VADARALLGPDAIIGLSTH----T--LEEA----AAALAAGADYVGVG  131 (212)
T ss_pred             CEEecCcccCC--HHHHHHHcCCCCEEEEeCC----C--HHHH----HHHhHcCCCEEEEC
Confidence            98777543221  1222222345667888887    2  2233    34446899999873

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.87  E-value=0.036  Score=56.35  Aligned_cols=37  Identities=27%  Similarity=0.377  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~  414 (420)
                      .+++++|+|+|+||.|..++..|+..|+ +++|++.+.
T Consensus        25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            3567899999999999999999999999 999999863

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=94.87  E-value=4.5  Score=42.73  Aligned_cols=210  Identities=15%  Similarity=0.118  Sum_probs=130.4

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEE----EecC---CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEI----RLDG---LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vEl----RlD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (420)
                      +.++.+.-++...+.|.+.||.    ..|.   |...++.+.++.+++.. +.++-.-+|..+--|.....++-....++
T Consensus        23 ~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~  102 (467)
T PRK14041         23 RTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVK  102 (467)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHH
Confidence            4455555555556679999999    3442   12224456677776542 45666556866666654444454556788


Q ss_pred             HHHHhCCcEEEEEccccc--chhHHHhhcCCCCcEEEEEccc-CCCCC--CHHHHHHHHHHHHHcCCCEEEEEeec--CC
Q 014691          106 LAMELGADYIDVELQVAR--EFNDSIRGKKPEKCKVIVSSHN-YQYTP--SVEDLSNLVARIQASGADIVKFATTA--LD  178 (420)
Q Consensus       106 ~~~~~~~d~iDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~-f~~tP--~~~el~~~~~~~~~~gaDivKia~~~--~s  178 (420)
                      .+++.|++.|-|=...++  .....+..+++.+..+...... |  .|  +.+.+.+..+++.+.|||.+-|+=|.  -+
T Consensus       103 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~--~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~  180 (467)
T PRK14041        103 KVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTV--SPVHTLEYYLEFARELVDMGVDSICIKDMAGLLT  180 (467)
T ss_pred             HHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEecc--CCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcC
Confidence            999999999888655443  1112222233445555544332 3  24  55778999999999999999888766  57


Q ss_pred             HHHHHHHHHHhcc-CCCCEEEE--ecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691          179 ITDVARVFQITVH-SQVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (420)
Q Consensus       179 ~~D~~~ll~~~~~-~~~p~I~~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~  246 (420)
                      +.++.++.+.++. .+.|+-..  +.--+|..+=+.+-.-|....=+++..- +...||++.+++...++-
T Consensus       181 P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~-g~gagN~atE~lv~~L~~  250 (467)
T PRK14041        181 PKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPF-SMGTSQPPFESMYYAFRE  250 (467)
T ss_pred             HHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeecccc-CCCCCChhHHHHHHHHHh
Confidence            8899888887654 35665543  4444455555555555655544555431 223579999998877763

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=94.79  E-value=2  Score=40.02  Aligned_cols=145  Identities=18%  Similarity=0.125  Sum_probs=86.5

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (420)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~  111 (420)
                      ..+.+++.+-++++.+.++|.+=+.--++.      .....+... ...+-|.-.-..|.   .+.+.+..-.+.+++.|
T Consensus        13 ~~t~~~i~~~~~~a~~~~~~av~v~p~~v~------~~~~~l~~~-~~~v~~~~~fp~g~---~~~~~k~~eve~A~~~G   82 (203)
T cd00959          13 DATEEDIRKLCDEAKEYGFAAVCVNPCFVP------LAREALKGS-GVKVCTVIGFPLGA---TTTEVKVAEAREAIADG   82 (203)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEcHHHHH------HHHHHcCCC-CcEEEEEEecCCCC---CcHHHHHHHHHHHHHcC
Confidence            347788888888877778888876532211      122222222 23344443333333   23456666688999999


Q ss_pred             CcEEEEEcccc-------cchhHHHh---h-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE--e--ec
Q 014691          112 ADYIDVELQVA-------REFNDSIR---G-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA--T--TA  176 (420)
Q Consensus       112 ~d~iDiEl~~~-------~~~~~~l~---~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia--~--~~  176 (420)
                      +|-||+=++..       +...+++.   . .+....|+|+-.-..    +.+++....+-+.+.|||++|.-  .  ..
T Consensus        83 Adevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l----~~~~i~~a~ria~e~GaD~IKTsTG~~~~~  158 (203)
T cd00959          83 ADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLL----TDEEIIKACEIAIEAGADFIKTSTGFGPGG  158 (203)
T ss_pred             CCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC----CHHHHHHHHHHHHHhCCCEEEcCCCCCCCC
Confidence            99999966543       11233333   2 222234555443322    35678888888889999999987  3  23


Q ss_pred             CCHHHHHHHHHHhc
Q 014691          177 LDITDVARVFQITV  190 (420)
Q Consensus       177 ~s~~D~~~ll~~~~  190 (420)
                      .+++|+..+.+...
T Consensus       159 at~~~v~~~~~~~~  172 (203)
T cd00959         159 ATVEDVKLMKEAVG  172 (203)
T ss_pred             CCHHHHHHHHHHhC
Confidence            56788877766654

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=94.76  E-value=1.9  Score=41.62  Aligned_cols=146  Identities=16%  Similarity=0.187  Sum_probs=92.9

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCC-CCCch-hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH---HHHHHH
Q 014691           32 GESVDKMVVDMGKANASGADLVEIRLDGLK-NFNPR-ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER---VDVLRL  106 (420)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~---~~ll~~  106 (420)
                      ..+++++.    .+.+.|||-|||.-++-. .+.|. ..++.+++...+|+.+-+|..  ||-|-.++++.   .+-++.
T Consensus         8 v~s~~~a~----~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR--~gdF~Ys~~E~~~M~~di~~   81 (248)
T PRK11572          8 CYSMECAL----TAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVTIPVHPIIRPR--GGDFCYSDGEFAAMLEDIAT   81 (248)
T ss_pred             ECCHHHHH----HHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcCCCeEEEEecC--CCCCCCCHHHHHHHHHHHHH
Confidence            56666655    445679999999998754 34442 345666666799999999974  45566666443   344566


Q ss_pred             HHHhCCcEEEE-----EcccccchhHHHhhcCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHH
Q 014691          107 AMELGADYIDV-----ELQVAREFNDSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTALDIT  180 (420)
Q Consensus       107 ~~~~~~d~iDi-----El~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~  180 (420)
                      +.++|+|-|=+     |-..+.+..+.+... .++.++  .||- |+.+++.   .+-++.+.++|.|=|==.--+.+..
T Consensus        82 ~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~-a~~~~v--TFHRAfD~~~d~---~~al~~l~~lG~~rILTSGg~~~a~  155 (248)
T PRK11572         82 VRELGFPGLVTGVLDVDGHVDMPRMRKIMAA-AGPLAV--TFHRAFDMCANP---LNALKQLADLGVARILTSGQQQDAE  155 (248)
T ss_pred             HHHcCCCEEEEeeECCCCCcCHHHHHHHHHH-hcCCce--EEechhhccCCH---HHHHHHHHHcCCCEEECCCCCCCHH
Confidence            66788886544     444555666777643 245555  5675 8888854   4567777788865443334445566


Q ss_pred             HHHHHHHHh
Q 014691          181 DVARVFQIT  189 (420)
Q Consensus       181 D~~~ll~~~  189 (420)
                      |.+..++-+
T Consensus       156 ~g~~~L~~l  164 (248)
T PRK11572        156 QGLSLIMEL  164 (248)
T ss_pred             HHHHHHHHH
Confidence            666555543

>PLN02494 adenosylhomocysteinase

Probab=94.75  E-value=0.062  Score=56.27  Aligned_cols=41  Identities=37%  Similarity=0.464  Sum_probs=37.0

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      ..+.||+++|+|.|..|+.++..+..+|++|+++++++.++
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~  290 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICA  290 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhh
Confidence            45789999999999999999999999999999999987653

>PRK08223 hypothetical protein; Validated

Probab=94.66  E-value=0.039  Score=54.29  Aligned_cols=36  Identities=22%  Similarity=0.302  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      .+++.+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus        24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            3567899999999999999999999999 99999975

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.64  E-value=0.042  Score=56.15  Aligned_cols=35  Identities=26%  Similarity=0.428  Sum_probs=32.6

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      +++++|+|+|+||.|..++..|+..|+ +|++++.+
T Consensus        39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            457899999999999999999999999 99999986

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=94.60  E-value=1.9  Score=38.48  Aligned_cols=131  Identities=18%  Similarity=0.116  Sum_probs=75.9

Q ss_pred             ecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc--h--hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691           30 IMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNP--R--ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (420)
Q Consensus        30 l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~--~--~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (420)
                      ......+...+.++.+.+.|+|+++++.........  .  +.+..+.+..+.|+++-......+       +......+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~a~   78 (200)
T cd04722           6 LAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAA-------AAVDIAAA   78 (200)
T ss_pred             cccCchHHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCch-------hhhhHHHH
Confidence            333333555666666667799999999876543221  1  125555556688988876532211       11111134


Q ss_pred             HHHHhCCcEEEEEccc------ccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec
Q 014691          106 LAMELGADYIDVELQV------AREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA  176 (420)
Q Consensus       106 ~~~~~~~d~iDiEl~~------~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~  176 (420)
                      .+.+.|+|+|.|-...      ..+.++.+...- .+..++...|......   +.     .+.+.|+|++.+....
T Consensus        79 ~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~---~~-----~~~~~g~d~i~~~~~~  146 (200)
T cd04722          79 AARAAGADGVEIHGAVGYLAREDLELIRELREAV-PDVKVVVKLSPTGELA---AA-----AAEEAGVDEVGLGNGG  146 (200)
T ss_pred             HHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc-CCceEEEEECCCCccc---hh-----hHHHcCCCEEEEcCCc
Confidence            6677789999887665      233444554321 3688888887532211   11     1567899999876543

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=94.59  E-value=4.9  Score=43.73  Aligned_cols=211  Identities=15%  Similarity=0.142  Sum_probs=132.7

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (420)
                      +.++.+.-++...+.|.+.+|.-    .|.   |...++.+.++.+++.. +.++-.-+|..+-=|..+.+++-..+.++
T Consensus        24 ~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~  103 (592)
T PRK09282         24 RTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVE  103 (592)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHH
Confidence            44555555555566799999995    553   22235566677766553 57777778866666665666667777899


Q ss_pred             HHHHhCCcEEEEEccccc--chhHHHhhcCCCCcEEEEEcccCCCCC--CHHHHHHHHHHHHHcCCCEEEEEeec--CCH
Q 014691          106 LAMELGADYIDVELQVAR--EFNDSIRGKKPEKCKVIVSSHNYQYTP--SVEDLSNLVARIQASGADIVKFATTA--LDI  179 (420)
Q Consensus       106 ~~~~~~~d~iDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~tP--~~~el~~~~~~~~~~gaDivKia~~~--~s~  179 (420)
                      ++.+.|++.+=|=...++  .....+...++.+..+-.... +...|  +.+.+.+..+++.+.|||.+=|+=|.  -++
T Consensus       104 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~-~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P  182 (592)
T PRK09282        104 KAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTIS-YTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGLLTP  182 (592)
T ss_pred             HHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEE-eccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCH
Confidence            999999998877654432  222222223334545543221 11134  56788999999999999999888776  468


Q ss_pred             HHHHHHHHHhccC-CCCEEE--EecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691          180 TDVARVFQITVHS-QVPIIG--LVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (420)
Q Consensus       180 ~D~~~ll~~~~~~-~~p~I~--~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~  246 (420)
                      .++.++.+.++.. +.|+-.  .+..-++..+=+..--.|..+.=+++..- +--.||++++++...++.
T Consensus       183 ~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~-g~~agn~~~e~vv~~L~~  251 (592)
T PRK09282        183 YAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPL-AFGTSQPPTESMVAALKG  251 (592)
T ss_pred             HHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeecccc-CCCcCCHhHHHHHHHHHh
Confidence            8998888876542 455443  35555566666665556655544454431 123478888887766653

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.58  E-value=0.11  Score=50.93  Aligned_cols=121  Identities=21%  Similarity=0.285  Sum_probs=78.2

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD---  344 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~---  344 (420)
                      ...++++|++.....++-    +++.+.++.+ .++++.|+-|-+|+...    +|+    -+.+.+++--.=-  |   
T Consensus        55 ~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~----i~~----~~i~~~I~p~KDV--DGl~  124 (284)
T PRK14177         55 VKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQ----IDE----RAAFDRIALEKDV--DGVT  124 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----CCH----HHHHhccCccccc--ccCC
Confidence            457899999987766643    3577777777 46789999999997532    221    1111222222100  1   


Q ss_pred             ----CeE-EEE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEe-CC
Q 014691          345 ----GKL-FGY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIAN-RT  413 (420)
Q Consensus       345 ----g~l-~G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~n-R~  413 (420)
                          |++ .|.    -.--.|++.-|+..           +.+++||+|+|+|.+. +|+-++.-|.+.|+.|++++ ||
T Consensus       125 ~~n~g~l~~g~~~~~PcTp~avi~ll~~y-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T  193 (284)
T PRK14177        125 TLSFGKLSMGVETYLPCTPYGMVLLLKEY-----------GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT  193 (284)
T ss_pred             hhhHHHHHcCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC
Confidence                111 111    11245666655543           2678999999999877 99999999999999999988 44


Q ss_pred             h
Q 014691          414 Y  414 (420)
Q Consensus       414 ~  414 (420)
                      .
T Consensus       194 ~  194 (284)
T PRK14177        194 Q  194 (284)
T ss_pred             C
Confidence            3

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.56  E-value=0.28  Score=48.14  Aligned_cols=119  Identities=23%  Similarity=0.255  Sum_probs=76.7

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCC--
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG--  345 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g--  345 (420)
                      ....+++|++.....++-    +++.+.++.+ .+++..|.-|-+|+..    ++|+    -+.+.+++.-.=-  ||  
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~----~~~~----~~i~~~I~p~KDV--DGl~  123 (278)
T PRK14172         54 EKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPK----HLDE----KKITNKIDANKDI--DCLT  123 (278)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCC----CCCH----HHHHhccCccccc--CccC
Confidence            457899999988777653    3576777777 4677999999999753    2222    1122222222100  11  


Q ss_pred             -----eE-EEE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691          346 -----KL-FGY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       346 -----~l-~G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR  412 (420)
                           ++ .|.    -.--.|++.-|+..           +.+++||+|+|+|-+. +|+-++.-|.+.|+.|+++..
T Consensus       124 ~~n~g~l~~g~~~~~PcTp~av~~lL~~~-----------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs  190 (278)
T PRK14172        124 FISVGKFYKGEKCFLPCTPNSVITLIKSL-----------NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHS  190 (278)
T ss_pred             HhhHHHHhCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCC
Confidence                 11 111    11234555555442           2678999999999877 999999999999999999973

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.52  E-value=0.074  Score=41.59  Aligned_cols=33  Identities=33%  Similarity=0.386  Sum_probs=30.3

Q ss_pred             EEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       383 ~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      +++|+|+|-+|--++..|.++|.+|+++.|.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence            589999999999999999999999999998753

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=94.50  E-value=1.7  Score=42.77  Aligned_cols=122  Identities=15%  Similarity=0.227  Sum_probs=78.0

Q ss_pred             HHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccc------------------ccchhHHHh
Q 014691           69 IKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQV------------------AREFNDSIR  130 (420)
Q Consensus        69 l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~------------------~~~~~~~l~  130 (420)
                      ++.+.+...+|+++...+    |   ++.....+..+..++.|+.-|-||-..                  .++..+.+.
T Consensus        70 ~~~I~~a~~~Pv~~D~d~----G---g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~  142 (285)
T TIGR02320        70 VEFMFDVTTKPIILDGDT----G---GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIR  142 (285)
T ss_pred             HHHHHhhcCCCEEEecCC----C---CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHH
Confidence            444555678999998763    4   356667778888899999999998753                  122333343


Q ss_pred             h---cCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhcc--CCCCEE
Q 014691          131 G---KKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVH--SQVPII  197 (420)
Q Consensus       131 ~---~~~~~~kiI~S~H~-f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~--~~~p~I  197 (420)
                      .   ++.+.--+|...-| +-..-..+|..++.+...+.|||++=+-....+.+++.++.+.+..  ++.|++
T Consensus       143 Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~  215 (285)
T TIGR02320       143 AGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLV  215 (285)
T ss_pred             HHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEE
Confidence            2   22222123333323 2112247788888888889999998876556888888887776542  245764

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.44  E-value=0.15  Score=50.02  Aligned_cols=126  Identities=19%  Similarity=0.289  Sum_probs=77.9

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHH--hhhhcccHHHHHhcceeEEEEeccCC
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAV--KCCDEVDTVAKSIGAVNCIIRRQSDG  345 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~--~~~d~l~~~A~~iGAvNTi~~~~~~g  345 (420)
                      ...++++|++.....++-    +++...++.+ .++.+.|+-|-.|+...+-  ..++.+++ .+.+-..+..-    -|
T Consensus        52 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~N----~g  126 (282)
T PRK14169         52 QRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDP-DKDVDGFSPVS----VG  126 (282)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCc-ccCcccCChhh----hH
Confidence            457899999987766654    2577777777 4678999999999763221  11111111 01111111110    01


Q ss_pred             eEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEe-CCh
Q 014691          346 KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIAN-RTY  414 (420)
Q Consensus       346 ~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~n-R~~  414 (420)
                      +++ |.    -.--.|++.-|+..           +.+++||+++|||.+. +|+-++.-|.+.|+.|+++. ||.
T Consensus       127 ~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~  191 (282)
T PRK14169        127 RLWANEPTVVASTPYGIMALLDAY-----------DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTR  191 (282)
T ss_pred             HHhcCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCC
Confidence            111 10    11244555555443           2678999999999877 99999999999999999985 554

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=94.44  E-value=0.06  Score=49.18  Aligned_cols=40  Identities=28%  Similarity=0.447  Sum_probs=32.6

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+++|+|+|||+|-+|--+++.|.+.|.+|+++-|++.+
T Consensus       163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~  202 (203)
T PF13738_consen  163 EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW  202 (203)
T ss_dssp             GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred             hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence            4578999999999999999999999999999999998753

...

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.44  E-value=0.056  Score=54.02  Aligned_cols=43  Identities=37%  Similarity=0.448  Sum_probs=39.0

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      .++.++.++|.|+ .|.|++++.+|+..|++|++..|+.+++++
T Consensus        31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~   74 (314)
T KOG1208|consen   31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEE   74 (314)
T ss_pred             ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence            4567899999996 999999999999999999999999988775

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.42  E-value=0.29  Score=48.04  Aligned_cols=124  Identities=20%  Similarity=0.299  Sum_probs=75.6

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHH--HhhhhcccHHHHHhcceeEEEEeccCC
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i--~~~~d~l~~~A~~iGAvNTi~~~~~~g  345 (420)
                      ....+++|++..-..++.    +++.+.++.+ .+++..|+-|-.|....+  ...++.+++ .+.+-..+.. +   -|
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p-~KDVDGl~~~-n---~g  127 (281)
T PRK14183         53 AKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDP-KKDVDGFHPY-N---VG  127 (281)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCc-hhcccccChh-h---hh
Confidence            457889999976555432    3577777777 567899999999975221  111111111 1111111111 0   01


Q ss_pred             eE-EEEe----cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691          346 KL-FGYN----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       346 ~l-~G~N----TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR  412 (420)
                      ++ .|.+    .--.|++.-|++.           +.+++||+++|+|.|. +|+-++.-|.+.|+.|+++..
T Consensus       128 ~l~~g~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs  189 (281)
T PRK14183        128 RLVTGLDGFVPCTPLGVMELLEEY-----------EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHI  189 (281)
T ss_pred             HHhcCCCCCCCCcHHHHHHHHHHc-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence            11 1110    1145666655543           2678999999999885 999999999999999988873

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.38  E-value=0.21  Score=49.17  Aligned_cols=117  Identities=23%  Similarity=0.332  Sum_probs=75.4

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCCeE
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKL  347 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g~l  347 (420)
                      ....+++|++.....++-    +++.+.++.+ .++.+.|+-|-.|.-..    +|+    -+.+.+++.-.=-  || +
T Consensus        54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~----i~~----~~i~~~I~p~KDV--DG-l  122 (284)
T PRK14179         54 ERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKH----INE----EKILLAIDPKKDV--DG-F  122 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCC----CCH----HHHHhccCccccc--cc-c
Confidence            357899999987776663    3577777777 46789999999997532    221    1111222211100  11 1


Q ss_pred             EEEe-------------cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEe
Q 014691          348 FGYN-------------TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN  411 (420)
Q Consensus       348 ~G~N-------------TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~n  411 (420)
                      +-+|             .--.|++.-|+..           +.+++||+++|||. |-+|+.++.-|.+.|+.|+++.
T Consensus       123 ~~~N~g~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~  189 (284)
T PRK14179        123 HPMNTGHLWSGRPVMIPCTPAGIMEMFREY-----------NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTH  189 (284)
T ss_pred             CHhhHHHHhCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEEC
Confidence            1111             1134555555442           26789999999998 6699999999999999999984

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=94.30  E-value=0.073  Score=55.83  Aligned_cols=41  Identities=37%  Similarity=0.421  Sum_probs=37.7

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      ..+.||+++|+|.|.+|++++..|..+|++|+++++++.++
T Consensus       250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a  290 (476)
T PTZ00075        250 VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICA  290 (476)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhH
Confidence            56899999999999999999999999999999999987665

>PRK06153 hypothetical protein; Provisional

Probab=94.29  E-value=0.044  Score=55.94  Aligned_cols=35  Identities=20%  Similarity=0.357  Sum_probs=32.0

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      +++++|+|+|+||+|..++..|+..|+ +|++++-+
T Consensus       174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            457899999999999999999999999 99999864

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.26  E-value=0.056  Score=50.27  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=32.6

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      .+++++|+|+|+||.|..++..|+..|+ +|++++.+
T Consensus        18 ~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          18 RLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            3557899999999999999999999999 99999865

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.22  E-value=0.073  Score=56.53  Aligned_cols=39  Identities=33%  Similarity=0.236  Sum_probs=35.9

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+.+|+|+|+|.+|.+++..+..+|++|+++++++++.+
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle  202 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAE  202 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            478999999999999999999999999999999987765

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=94.14  E-value=0.081  Score=40.43  Aligned_cols=29  Identities=38%  Similarity=0.500  Sum_probs=26.2

Q ss_pred             EEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          386 VIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       386 viGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      |||+|-+|.++++.|.+.|.+|+|+.|+.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~   29 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKND   29 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence            79999999999999999999999999864

...

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=94.06  E-value=5.8  Score=37.90  Aligned_cols=200  Identities=15%  Similarity=0.146  Sum_probs=122.2

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCC----C-CCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLK----N-FNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRLA  107 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~----~-~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~  107 (420)
                      +.++.++-++.+.+.|+|.||+=.=--.    - .++.+.++.+.+.. +.++.+-+|..             .+.++.+
T Consensus        17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~-------------~~~i~~a   83 (265)
T cd03174          17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR-------------EKGIERA   83 (265)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc-------------hhhHHHH
Confidence            5666777677767789999998532111    0 12233455555443 45665555531             3456677


Q ss_pred             HHhCCcEEEEEccccc----------------chhHHHhhcCCCCcEEEEEc-ccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 014691          108 MELGADYIDVELQVAR----------------EFNDSIRGKKPEKCKVIVSS-HNYQYTPSVEDLSNLVARIQASGADIV  170 (420)
Q Consensus       108 ~~~~~d~iDiEl~~~~----------------~~~~~l~~~~~~~~kiI~S~-H~f~~tP~~~el~~~~~~~~~~gaDiv  170 (420)
                      .+.|++.|-+=+...+                +..+.+...+..+..+.++. ..+.+.-+.+++.+.++++.++|+|.+
T Consensus        84 ~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i  163 (265)
T cd03174          84 LEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEI  163 (265)
T ss_pred             HhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence            8888898888765541                12222223456788888888 445421245789999999999999999


Q ss_pred             EEEeec--CCHHHHHHHHHHhccC-C-CCEEEEecC--CcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHH
Q 014691          171 KFATTA--LDITDVARVFQITVHS-Q-VPIIGLVMG--ERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY  244 (420)
Q Consensus       171 Kia~~~--~s~~D~~~ll~~~~~~-~-~p~I~~~MG--~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~  244 (420)
                      -++-+.  -+++++.++++.+... + .|+-..+=-  .+|...=+..-..|..+.=+++.. -.-..|+++.+++...+
T Consensus       164 ~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G-~G~~~Gn~~~e~~~~~l  242 (265)
T cd03174         164 SLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNG-LGERAGNAATEDLVAAL  242 (265)
T ss_pred             EechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEecccc-ccccccCccHHHHHHHH
Confidence            887443  5789999988876543 2 555443322  233333444444555444455543 12468999999988776


Q ss_pred             hcc
Q 014691          245 NFR  247 (420)
Q Consensus       245 ~~~  247 (420)
                      +..
T Consensus       243 ~~~  245 (265)
T cd03174         243 EGL  245 (265)
T ss_pred             Hhc
Confidence            643

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.05  E-value=0.076  Score=47.90  Aligned_cols=41  Identities=37%  Similarity=0.443  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+...+++|+|+|-+|+.|+..+..+|+++++++...++.+
T Consensus        17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~   57 (168)
T PF01262_consen   17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLR   57 (168)
T ss_dssp             EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHH
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHH
Confidence            34567999999999999999999999999999999877654

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.01  E-value=0.072  Score=57.21  Aligned_cols=40  Identities=25%  Similarity=0.228  Sum_probs=35.8

Q ss_pred             cCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       379 ~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+||.++|.|+ |+.|++++..|.+.|++|+++.|+.++++
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~  118 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAE  118 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence            35789999997 88999999999999999999999988764

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=93.99  E-value=0.75  Score=45.04  Aligned_cols=137  Identities=20%  Similarity=0.279  Sum_probs=88.8

Q ss_pred             eeeccCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHH
Q 014691          257 GIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS  331 (420)
Q Consensus       257 ~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~  331 (420)
                      -++|+.-+....-.+-.+..+++|+...+..++.    +++.+.++.+ .++.+.|.-|..|.=.    ++|+-    +.
T Consensus        36 ilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~----hld~~----~i  107 (283)
T COG0190          36 ILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPK----HLDEQ----KL  107 (283)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCCC----CCCHH----HH
Confidence            4556655444444556778999999987776653    3677777777 6788999999999532    23310    11


Q ss_pred             hcceeEEEEe----c-cCCeEE-E---E-ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHH
Q 014691          332 IGAVNCIIRR----Q-SDGKLF-G---Y-NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGA  400 (420)
Q Consensus       332 iGAvNTi~~~----~-~~g~l~-G---~-NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL  400 (420)
                      +.++.--.=-    + .-|++. +   + -.--.|++.-|++.           +.++.||+++|||.+. +||-++.-|
T Consensus       108 l~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~-----------~i~l~Gk~~vVVGrS~iVGkPla~lL  176 (283)
T COG0190         108 LQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEY-----------GIDLRGKNVVVVGRSNIVGKPLALLL  176 (283)
T ss_pred             HhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcCcHHHHHHH
Confidence            1111111000    0 013332 2   0 12257888877764           2678999999999988 999999999


Q ss_pred             HhCCCeEEEEeC
Q 014691          401 KAKGARVVIANR  412 (420)
Q Consensus       401 ~~~g~~i~v~nR  412 (420)
                      ...++.|++++.
T Consensus       177 ~~~naTVtvcHs  188 (283)
T COG0190         177 LNANATVTVCHS  188 (283)
T ss_pred             HhCCCEEEEEcC
Confidence            999999999885

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.99  E-value=0.27  Score=48.27  Aligned_cols=119  Identities=22%  Similarity=0.327  Sum_probs=78.1

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCC--
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG--  345 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g--  345 (420)
                      ..+.+++|++.....++.    +++.+.++.+ .++.+.|+-|-.|...    ++|+    -+.+.+++.-.=-  ||  
T Consensus        52 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~----~i~~----~~i~~~I~p~KDV--DGl~  121 (282)
T PRK14182         52 RKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPK----HVDE----RAVLDAISPAKDA--DGFH  121 (282)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH----HHHHhccCcccCc--CCCC
Confidence            447899999987766643    3577777777 5678999999999753    2221    1222333322111  11  


Q ss_pred             -----eEE-EE-----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691          346 -----KLF-GY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       346 -----~l~-G~-----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR  412 (420)
                           +++ |.     -.--.|++.-|+..           +.+++||+++|+|-+. +|+-++.-|.+.|+.|+++..
T Consensus       122 ~~n~g~l~~g~~~~~~PcTp~avi~ll~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs  189 (282)
T PRK14182        122 PFNVGALSIGIAGVPRPCTPAGVMRMLDEA-----------RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHS  189 (282)
T ss_pred             HhHHHHHhCCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence                 111 11     11245666666543           2678999999999887 999999999999999998874

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.97  E-value=0.92  Score=44.54  Aligned_cols=122  Identities=23%  Similarity=0.305  Sum_probs=78.1

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCC--
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG--  345 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g--  345 (420)
                      ....+++|++.....++.    +++.+.++.+ .+++..|+-|-.|.-.    ++|+    -+.+.+++.-.=-  ||  
T Consensus        48 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~----~i~~----~~v~~~I~p~KDV--DGl~  117 (279)
T PRK14178         48 HRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPK----GVDT----ERVIAAILPEKDV--DGFH  117 (279)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCC----CCCH----HHHHhccCcccCc--ccCC
Confidence            446889999987666654    3677777777 5778999999999743    2222    1111222211100  11  


Q ss_pred             -----eEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccc-hHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          346 -----KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       346 -----~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaG-Gaara~~~aL~~~g~~i~v~nR~~  414 (420)
                           +++ |.    -.--.|++.-|+..           +.+++||+|+|+|-+ -.||.++.-|...|+.|+++.++.
T Consensus       118 ~~n~g~l~~~~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t  186 (279)
T PRK14178        118 PLNLGRLVSGLPGFAPCTPNGIMTLLHEY-----------KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT  186 (279)
T ss_pred             hhhHHHHhCCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh
Confidence                 111 10    11234555555442           267899999999988 599999999999999999888764


Q ss_pred             h
Q 014691          415 E  415 (420)
Q Consensus       415 ~  415 (420)
                      .
T Consensus       187 ~  187 (279)
T PRK14178        187 E  187 (279)
T ss_pred             h
Confidence            3

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.95  E-value=0.41  Score=47.19  Aligned_cols=123  Identities=23%  Similarity=0.338  Sum_probs=77.4

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEe----c-
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRR----Q-  342 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~----~-  342 (420)
                      -..++++|++.....++.    +++.+.++.+ .++++.|+-|-+|...    ++|+    -+.+.+++.-.=-    + 
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~----~id~----~~i~~~I~p~KDVDGl~~~  125 (288)
T PRK14171         54 IKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPS----SIDK----NKILSAVSPSKDIDGFHPL  125 (288)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCC----CCCH----HHHHhccCcccccccCCcc
Confidence            457899999987766653    3566667666 4677999999999753    2221    1122222222100    0 


Q ss_pred             cCCeEE-EE-----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEe-CCh
Q 014691          343 SDGKLF-GY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIAN-RTY  414 (420)
Q Consensus       343 ~~g~l~-G~-----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~n-R~~  414 (420)
                      .-|++. |.     -.--.|++.-|+..           +.+++||+++|||-+. +||-++.-|.+.|+.|++++ ||.
T Consensus       126 N~g~l~~g~~~~~~PcTp~av~~lL~~y-----------~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~  194 (288)
T PRK14171        126 NVGYLHSGISQGFIPCTALGCLAVIKKY-----------EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTH  194 (288)
T ss_pred             chhhhhcCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC
Confidence            012221 11     01134555555443           2578999999999877 99999999999999999887 553

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=93.93  E-value=3.2  Score=38.94  Aligned_cols=118  Identities=19%  Similarity=0.155  Sum_probs=69.1

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCC-CCCCCCHHHHHHHHHHHHHhCC
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEG-GQYDGDENERVDVLRLAMELGA  112 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eG-G~~~~~~~~~~~ll~~~~~~~~  112 (420)
                      +.++..+-++.+...|+-++++.  .      .+.++.+++..++|+|...|....+ -.+...   ..+.++.+.+.|+
T Consensus        21 ~~~~~~~~a~a~~~~G~~~~~~~--~------~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~---~~~~v~~a~~aGa   89 (221)
T PRK01130         21 SPEIMAAMALAAVQGGAVGIRAN--G------VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITP---TLKEVDALAAAGA   89 (221)
T ss_pred             CHHHHHHHHHHHHHCCCeEEEcC--C------HHHHHHHHHhCCCCEEEEEecCCCCCCceECC---CHHHHHHHHHcCC
Confidence            33444544555556788888863  1      3467777766799998776621011 122111   2234677888899


Q ss_pred             cEEEEEccc---cc-chhHHHh-hcCC-CCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          113 DYIDVELQV---AR-EFNDSIR-GKKP-EKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       113 d~iDiEl~~---~~-~~~~~l~-~~~~-~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      |+|=+.+..   +. +...++. ..++ .+..++...|      +.+++    .++.+.|+|++.+
T Consensus        90 d~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~------t~ee~----~~a~~~G~d~i~~  145 (221)
T PRK01130         90 DIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCS------TLEEG----LAAQKLGFDFIGT  145 (221)
T ss_pred             CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCC------CHHHH----HHHHHcCCCEEEc
Confidence            988877653   10 2222332 2234 6788888766      23343    5677889999876

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.93  E-value=0.43  Score=47.14  Aligned_cols=119  Identities=18%  Similarity=0.243  Sum_probs=76.7

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD---  344 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~---  344 (420)
                      ....+++|++.....++.    +++.+.++.+ .++...|+-|-.|...    ++|+.    +.+.+++.-.=-  |   
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~----~i~~~----~i~~~I~p~KDV--DGl~  123 (294)
T PRK14187         54 QRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPN----HIDKN----LIINTIDPEKDV--DGFH  123 (294)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCHH----HHHhccCcccCc--ccCC
Confidence            457899999987666653    3566667767 5678999999999852    23221    112222222100  1   


Q ss_pred             ----CeE-EEEe------cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691          345 ----GKL-FGYN------TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       345 ----g~l-~G~N------TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR  412 (420)
                          |++ .|.+      .--.|++.-|+..           +.+++||+++|+|.+. +|+-++.-|.+.|+.|+++..
T Consensus       124 ~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs  192 (294)
T PRK14187        124 NENVGRLFTGQKKNCLIPCTPKGCLYLIKTI-----------TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHS  192 (294)
T ss_pred             hhhHHHHhCCCCCCCccCcCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCC
Confidence                121 1211      1245555555543           2678999999999887 999999999999999998875

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=93.90  E-value=0.067  Score=61.08  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=33.2

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..||+|+|||+|.||.++|+.|+..|.+|+|+.|..
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~  339 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH  339 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence            358999999999999999999999999999999864

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.90  E-value=0.33  Score=47.86  Aligned_cols=119  Identities=22%  Similarity=0.330  Sum_probs=76.1

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD---  344 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~---  344 (420)
                      ....+++|++.....++-    +++.+.++.+ .+....|+-|-+|.-.    ++|+.    +.+.+++.-.=-  |   
T Consensus        51 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~----~i~~~----~i~~~I~p~KDV--DGl~  120 (287)
T PRK14173         51 DRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPP----HIDFQ----RVLEAIDPLKDV--DGFH  120 (287)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCHH----HHHhccCccccc--cccC
Confidence            346889999987776653    3577777777 4567999999999753    22221    122222222100  1   


Q ss_pred             ----CeEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691          345 ----GKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       345 ----g~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR  412 (420)
                          |+++ |.    -.--.|++.-|+..           +.+++||+|+|||.+. +|+-++.-|.+.|+.|+++.+
T Consensus       121 ~~N~g~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs  187 (287)
T PRK14173        121 PLNVGRLWMGGEALEPCTPAGVVRLLKHY-----------GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHS  187 (287)
T ss_pred             hhhhHHHhcCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCC
Confidence                1111 11    11234555555432           2678999999999877 999999999999999988764

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=93.89  E-value=2.3  Score=42.02  Aligned_cols=85  Identities=20%  Similarity=0.240  Sum_probs=57.6

Q ss_pred             CcEEEEeecCC-CHHHHHHHHHhhhhcCCCEEEEEecCCCC-----C-----CchhHHH----HHHhhCCCcEEEEeccC
Q 014691           23 PTLICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKN-----F-----NPRENIK----TLIKESPVPTLFTYRPI   87 (420)
Q Consensus        23 ~~~icv~l~~~-~~~e~~~~~~~~~~~~~D~vElRlD~l~~-----~-----~~~~~l~----~l~~~~~~PiI~T~R~~   87 (420)
                      .|. .+.+.+. +.++..+-++.+.+.++|+||+=+.+-..     .     .+.+.+.    .+++..++|+.+-+|..
T Consensus       100 ~p~-i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~  178 (299)
T cd02940         100 KIL-IASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPN  178 (299)
T ss_pred             CeE-EEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCC
Confidence            454 4678888 99999988887766789999998886432     0     1112333    33344579999998841


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 014691           88 WEGGQYDGDENERVDVLRLAMELGADYIDV  117 (420)
Q Consensus        88 ~eGG~~~~~~~~~~~ll~~~~~~~~d~iDi  117 (420)
                               .....++.+.+.+.|+|.|-+
T Consensus       179 ---------~~~~~~~a~~~~~~Gadgi~~  199 (299)
T cd02940         179 ---------ITDIREIARAAKEGGADGVSA  199 (299)
T ss_pred             ---------chhHHHHHHHHHHcCCCEEEE
Confidence                     124556777788889998753

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.80  E-value=0.18  Score=47.65  Aligned_cols=54  Identities=20%  Similarity=0.311  Sum_probs=43.7

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~  414 (420)
                      ++|...+++..+...       +.+++|++++|.|-|.+|+.++..|.++|+ .|.|.+.+.
T Consensus         3 g~Gv~~~~~~~~~~~-------~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211           3 GYGVVVAMKAAMKHL-------GDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             hhHHHHHHHHHHHHc-------CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            567777777665421       246889999999999999999999999998 788888765

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.72  E-value=0.59  Score=46.06  Aligned_cols=119  Identities=22%  Similarity=0.270  Sum_probs=77.1

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD---  344 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~---  344 (420)
                      ...++++|++.....++.    +++.+.++.+ .++.+.|+-|-.|.-.    ++|+.    +.+.+++.-.=-  |   
T Consensus        48 ~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~----~i~~~----~i~~~I~p~KDV--DGl~  117 (287)
T PRK14181         48 VKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPK----HLDAQ----AILQAISPDKDV--DGLH  117 (287)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCC----CcCHH----HHHhccCcccCc--ccCC
Confidence            457899999987766654    3677777777 5678999999999753    22221    122222222100  1   


Q ss_pred             ----CeEE-EE-----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhC----CCeEEE
Q 014691          345 ----GKLF-GY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAK----GARVVI  409 (420)
Q Consensus       345 ----g~l~-G~-----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~----g~~i~v  409 (420)
                          |+++ |.     -.--.|++.-|+..           +.+++||+|+|||-+. +||-++.-|.+.    ++.|++
T Consensus       118 p~n~g~l~~g~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtv  186 (287)
T PRK14181        118 PVNMGKLLLGETDGFIPCTPAGIIELLKYY-----------EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTL  186 (287)
T ss_pred             hhhHHHHhcCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEE
Confidence                1221 11     01145556655543           2678999999999877 999999999888    679999


Q ss_pred             EeC
Q 014691          410 ANR  412 (420)
Q Consensus       410 ~nR  412 (420)
                      +..
T Consensus       187 chs  189 (287)
T PRK14181        187 LHS  189 (287)
T ss_pred             eCC
Confidence            974

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.72  E-value=0.083  Score=58.00  Aligned_cols=36  Identities=33%  Similarity=0.353  Sum_probs=33.1

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+++|+|||+|.+|.++++.|...|.+|+|+.+..
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~  360 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP  360 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            358999999999999999999999999999999864

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=93.72  E-value=0.093  Score=59.53  Aligned_cols=35  Identities=26%  Similarity=0.281  Sum_probs=32.7

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ..||+|+|||+|.+|-++++.|...|++|+|+++.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            46899999999999999999999999999999974

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=93.71  E-value=0.072  Score=54.86  Aligned_cols=35  Identities=31%  Similarity=0.377  Sum_probs=32.1

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      +++.+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus        40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D   75 (392)
T PRK07878         40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD   75 (392)
T ss_pred             HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            456799999999999999999999999 99999975

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.70  E-value=0.37  Score=47.36  Aligned_cols=119  Identities=25%  Similarity=0.364  Sum_probs=76.1

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCC--
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG--  345 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g--  345 (420)
                      ....+++|++.....++-    +++.+.++.+ .++...|+-|-.|.-.    ++|+.    +.+.+++.-.=-  ||  
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~----~i~~~----~i~~~I~p~KDV--DGl~  122 (284)
T PRK14170         53 QKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPE----HISEE----KVIDTISYDKDV--DGFH  122 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCC----CCCHH----HHHhccCcccCc--ccCC
Confidence            446889999987666653    2576777777 5678999999999753    22221    122222222100  11  


Q ss_pred             -----eEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691          346 -----KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       346 -----~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR  412 (420)
                           +++ |.    -.--.|++.-|+..           +.+++||+|+|+|.+. +||-++.-|.+.|+.|+++..
T Consensus       123 p~N~g~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs  189 (284)
T PRK14170        123 PVNVGNLFIGKDSFVPCTPAGIIELIKST-----------GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHS  189 (284)
T ss_pred             hhhhhHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence                 111 10    01145666655543           2678999999999888 999999999999999988763

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=93.65  E-value=2.7  Score=39.37  Aligned_cols=119  Identities=18%  Similarity=0.184  Sum_probs=67.4

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGAD  113 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d  113 (420)
                      +..++.+-++.+...|+.++|+  +.      .+.++.+++...+|++.-+|..-++...-.++  +.+.++.+.+.|++
T Consensus        25 ~~~~i~~~a~~~~~~G~~~~~~--~~------~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~--~~~~~~~a~~aGad   94 (219)
T cd04729          25 SPEIMAAMALAAVQGGAVGIRA--NG------VEDIRAIRARVDLPIIGLIKRDYPDSEVYITP--TIEEVDALAAAGAD   94 (219)
T ss_pred             cHHHHHHHHHHHHHCCCeEEEc--CC------HHHHHHHHHhCCCCEEEEEecCCCCCCceeCC--CHHHHHHHHHcCCC
Confidence            3444555556667789999885  22      23566666557899987666433322111121  34567888889999


Q ss_pred             EEEEEccc---cc-chhHHHh-hcCCC-CcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          114 YIDVELQV---AR-EFNDSIR-GKKPE-KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       114 ~iDiEl~~---~~-~~~~~l~-~~~~~-~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      +|=+....   +. +...++. ..++. ...++...|    ||  ++    ..++.+.|+|++++
T Consensus        95 ~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~----t~--~e----a~~a~~~G~d~i~~  149 (219)
T cd04729          95 IIALDATDRPRPDGETLAELIKRIHEEYNCLLMADIS----TL--EE----ALNAAKLGFDIIGT  149 (219)
T ss_pred             EEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECC----CH--HH----HHHHHHcCCCEEEc
Confidence            88775432   11 1222222 11222 467777655    22  33    25566789999875

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=93.61  E-value=8  Score=42.12  Aligned_cols=209  Identities=14%  Similarity=0.117  Sum_probs=123.5

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEE----EecC-C--CCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691           33 ESVDKMVVDMGKANASGADLVEI----RLDG-L--KNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVL  104 (420)
Q Consensus        33 ~~~~e~~~~~~~~~~~~~D~vEl----RlD~-l--~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (420)
                      =+.+|.+.-++...+.|.+.+|.    ..|- +  ...++.+.++.+++.. +.|+-.-+|..+==|..+..++-..+.+
T Consensus        24 ~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v  103 (593)
T PRK14040         24 LRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFV  103 (593)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHH
Confidence            34455555555555679999999    3552 2  1225566777776543 5676555674333333344566677789


Q ss_pred             HHHHHhCCcEEEEEccccc--chhHHHhhcCCCCcEE--EEEcccCCCCC--CHHHHHHHHHHHHHcCCCEEEEEeec--
Q 014691          105 RLAMELGADYIDVELQVAR--EFNDSIRGKKPEKCKV--IVSSHNYQYTP--SVEDLSNLVARIQASGADIVKFATTA--  176 (420)
Q Consensus       105 ~~~~~~~~d~iDiEl~~~~--~~~~~l~~~~~~~~ki--I~S~H~f~~tP--~~~el~~~~~~~~~~gaDivKia~~~--  176 (420)
                      +.+.+.|++++-|-...++  .....+...+..+..+  -++|-.   .|  +.+.+.+..+++.+.|||.+-|+=|.  
T Consensus       104 ~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~---~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~  180 (593)
T PRK14040        104 ERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTT---SPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGL  180 (593)
T ss_pred             HHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEee---CCccCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence            9999999999888644332  1222222233334443  234421   33  35678899999999999999998776  


Q ss_pred             CCHHHHHHHHHHhcc-CCCCEEEE--ecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691          177 LDITDVARVFQITVH-SQVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (420)
Q Consensus       177 ~s~~D~~~ll~~~~~-~~~p~I~~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~  245 (420)
                      -++.++.++.+.++. .+.|+=..  +.--++..+=+.+---|....=+++..- .-..||++++++...++
T Consensus       181 l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~gl-G~~~Gn~~le~vv~~L~  251 (593)
T PRK14040        181 LKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSM-SMTYGHSATETLVATLE  251 (593)
T ss_pred             cCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcCCCEEEeccccc-cccccchhHHHHHHHHH
Confidence            468899888877654 35565433  3333344444444444544433444321 12358888777766655

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=93.59  E-value=0.97  Score=44.22  Aligned_cols=90  Identities=21%  Similarity=0.248  Sum_probs=64.6

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCC-------Cc---hhHHHHHHhhCCCcEEEEeccCCCCC
Q 014691           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNF-------NP---RENIKTLIKESPVPTLFTYRPIWEGG   91 (420)
Q Consensus        22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-------~~---~~~l~~l~~~~~~PiI~T~R~~~eGG   91 (420)
                      +.| +.+.|.+.+.++..+.++.+...|+|+||+=+-+-...       ++   .+.++.+++..+.|+++-+|..    
T Consensus        98 ~~p-vi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~----  172 (289)
T cd02810          98 GQP-LIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY----  172 (289)
T ss_pred             CCe-EEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC----
Confidence            344 56789999999999988888888999999987642210       11   1234444445588999888852    


Q ss_pred             CCCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 014691           92 QYDGDENERVDVLRLAMELGADYIDVEL  119 (420)
Q Consensus        92 ~~~~~~~~~~~ll~~~~~~~~d~iDiEl  119 (420)
                         .++++..++.+.+.+.|+|+|.+--
T Consensus       173 ---~~~~~~~~~a~~l~~~Gad~i~~~~  197 (289)
T cd02810         173 ---FDLEDIVELAKAAERAGADGLTAIN  197 (289)
T ss_pred             ---CCHHHHHHHHHHHHHcCCCEEEEEc
Confidence               2455677888888899999999853

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK13243 glyoxylate reductase; Reviewed

Probab=93.54  E-value=0.11  Score=52.18  Aligned_cols=40  Identities=35%  Similarity=0.448  Sum_probs=36.1

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.||++.|||.|.+|++++..|..+|++|.+++|+...
T Consensus       146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~  185 (333)
T PRK13243        146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKP  185 (333)
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCCh
Confidence            4678999999999999999999999999999999997543

>PLN02928 oxidoreductase family protein

Probab=93.53  E-value=0.11  Score=52.63  Aligned_cols=37  Identities=27%  Similarity=0.517  Sum_probs=34.5

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+.||++.|||.|.+|++++..|..+|++|+.++|+.
T Consensus       156 ~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~  192 (347)
T PLN02928        156 TLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSW  192 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCC
Confidence            5789999999999999999999999999999999973

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.53  E-value=0.41  Score=47.11  Aligned_cols=119  Identities=18%  Similarity=0.295  Sum_probs=75.6

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCC--
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG--  345 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g--  345 (420)
                      ....+++|++.....++-    +++.+.++.+ .+++..|+-|-+|....    +|+    -+.+.+++--.=-  ||  
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~----i~~----~~i~~~I~p~KDV--DGl~  123 (284)
T PRK14190         54 KKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKH----IDE----KAVIERISPEKDV--DGFH  123 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCH----HHHHhcCCccccc--cccC
Confidence            457899999987766654    2677777777 46789999999997532    221    1111122211100  11  


Q ss_pred             -----eEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691          346 -----KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       346 -----~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR  412 (420)
                           +++ |.    -.--.|++.-|+..           +.+++||+|+|||.+. +||-++.-|.+.|+.|+++..
T Consensus       124 ~~n~g~l~~~~~~~~PcTp~av~~lL~~~-----------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs  190 (284)
T PRK14190        124 PINVGRMMLGQDTFLPCTPHGILELLKEY-----------NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHS  190 (284)
T ss_pred             HhhHHHHhcCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeC
Confidence                 111 10    01134555555442           2678999999999877 999999999999999998864

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.52  E-value=0.26  Score=48.36  Aligned_cols=134  Identities=19%  Similarity=0.310  Sum_probs=81.7

Q ss_pred             eeecc-CccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHH
Q 014691          257 GIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAK  330 (420)
Q Consensus       257 ~v~G~-pv~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~  330 (420)
                      -++|+ |-+++.--.. ....+++|++.....++.    +++.+.++.+ .++...|+-|-+|....    +|+    -+
T Consensus        36 i~vg~d~as~~Yv~~k-~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~----i~~----~~  106 (282)
T PRK14166         36 ILVGDNPASQTYVKSK-AKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDH----ICK----DL  106 (282)
T ss_pred             EEeCCCHHHHHHHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCH----HH
Confidence            34553 3333333333 346788999987666653    3576777777 46789999999997532    221    11


Q ss_pred             HhcceeEEEEeccC-------CeE-EEEe-----cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHH
Q 014691          331 SIGAVNCIIRRQSD-------GKL-FGYN-----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKAL  396 (420)
Q Consensus       331 ~iGAvNTi~~~~~~-------g~l-~G~N-----TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~  396 (420)
                      .+.+++.-.=-  |       |++ .|.+     .--.|++.-|+..           +.+++||+|+|+|-+. +||-+
T Consensus       107 i~~~I~p~KDV--DGl~~~N~g~l~~g~~~~~~PcTp~avi~lL~~y-----------~i~l~Gk~vvVvGrS~iVGkPl  173 (282)
T PRK14166        107 ILESIISSKDV--DGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAY-----------EIDLEGKDAVIIGASNIVGRPM  173 (282)
T ss_pred             HHhccCcccCc--ccCChhhhHHHhcCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHH
Confidence            12222222100  1       111 1211     1145556555543           2578999999999877 99999


Q ss_pred             HHHHHhCCCeEEEEeC
Q 014691          397 AYGAKAKGARVVIANR  412 (420)
Q Consensus       397 ~~aL~~~g~~i~v~nR  412 (420)
                      +.-|.+.|+.|+++.+
T Consensus       174 a~lL~~~~atVt~chs  189 (282)
T PRK14166        174 ATMLLNAGATVSVCHI  189 (282)
T ss_pred             HHHHHHCCCEEEEeCC
Confidence            9999999999998875

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=93.44  E-value=0.089  Score=56.95  Aligned_cols=36  Identities=17%  Similarity=0.239  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      .+++.+|+|+|+||.|..++..|+..|+ +|++++.+
T Consensus       335 kL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D  371 (664)
T TIGR01381       335 RYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG  371 (664)
T ss_pred             HHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            4568899999999999999999999999 99999864

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV

Probab=93.42  E-value=8.1  Score=39.51  Aligned_cols=196  Identities=15%  Similarity=0.148  Sum_probs=107.2

Q ss_pred             HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEE-EEEccccc------chh---HHHhh-c--CC
Q 014691           68 NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYI-DVELQVAR------EFN---DSIRG-K--KP  134 (420)
Q Consensus        68 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~i-DiEl~~~~------~~~---~~l~~-~--~~  134 (420)
                      -+++++...+.|++.|.=+. ++|.   +.++..+++...+.-|+|.| |.|..-..      +..   ..... .  +-
T Consensus       120 g~R~~~gv~~rPli~Ti~kp-~~gl---d~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~T  195 (367)
T cd08205         120 GLRRLLGVHDRPLLGTIIKP-SIGL---SPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEET  195 (367)
T ss_pred             hHHHHhCCCCCCeeeeeeCC-CCCC---CHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhh
Confidence            34445455588999996653 3454   77888889999999899998 66653321      111   11111 1  11


Q ss_pred             CCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEEecC------------
Q 014691          135 EKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMG------------  202 (420)
Q Consensus       135 ~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~~MG------------  202 (420)
                      ++.++++..-    |-+.+|+.+..+.+++.|||.+=+.....-......+.+   +.+.|+.+.--+            
T Consensus       196 G~~~~y~~ni----t~~~~e~i~~a~~a~~~Gad~vmv~~~~~g~~~~~~l~~---~~~lpi~~H~a~~ga~~~~~~~g~  268 (367)
T cd08205         196 GRKTLYAPNI----TGDPDELRRRADRAVEAGANALLINPNLVGLDALRALAE---DPDLPIMAHPAFAGALSRSPDYGS  268 (367)
T ss_pred             CCcceEEEEc----CCCHHHHHHHHHHHHHcCCCEEEEecccccccHHHHHHh---cCCCeEEEccCcccccccCCCCcC
Confidence            3444443322    334589999999999999999888888766655544433   235556554333            


Q ss_pred             ---CcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc--cccCCCceEEeeeccCccccccHHHHHHHHH
Q 014691          203 ---ERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF--RQMGPDTKVFGIIGKPVGHSKSPILYNEAFK  277 (420)
Q Consensus       203 ---~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~--~~~~~~~~~~~v~G~pv~hS~SP~ihn~~f~  277 (420)
                         .+|++.|+.+   ...+.|.+....   -+  .+.+++.++.+.  ..+..-...+-+.+.    ...|......++
T Consensus       269 ~~~~~~kl~RlaG---ad~~~~~~~~gk---~~--~~~~~~~~la~~~~~~~~~iK~~~Pv~sg----G~~~~~v~~l~~  336 (367)
T cd08205         269 HFLLLGKLMRLAG---ADAVIFPGPGGR---FP--FSREECLAIARACRRPLGGIKPALPVPSG----GMHPGRVPELYR  336 (367)
T ss_pred             CHHHHHHHHHHcC---CCccccCCCccC---cC--CCHHHHHHHHHHHhCccccCCCceeeccC----CCCHHHHHHHHH
Confidence               3455666654   133333332210   11  344455555442  111111112222221    255666677777


Q ss_pred             HcCCCceee
Q 014691          278 SVGFNGVFV  286 (420)
Q Consensus       278 ~~gl~~~y~  286 (420)
                      .+|-|..+.
T Consensus       337 ~~G~dv~~~  345 (367)
T cd08205         337 DYGPDVILL  345 (367)
T ss_pred             HhCCcEEEE
Confidence            888554443

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=93.32  E-value=0.15  Score=51.40  Aligned_cols=40  Identities=20%  Similarity=0.199  Sum_probs=36.2

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.|+++.|||.|.+|++++..|..+|++|+.++|+.+.
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~  181 (330)
T PRK12480        142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNK  181 (330)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhH
Confidence            3578999999999999999999999999999999998654

>PRK07411 hypothetical protein; Validated

Probab=93.32  E-value=0.093  Score=54.02  Aligned_cols=35  Identities=31%  Similarity=0.442  Sum_probs=32.3

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      ++..+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus        36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D   71 (390)
T PRK07411         36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD   71 (390)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            456799999999999999999999999 99999875

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=93.30  E-value=2  Score=44.73  Aligned_cols=134  Identities=17%  Similarity=0.168  Sum_probs=79.2

Q ss_pred             CcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCc-EEEEeccCCCCCCCCCCHHHHH
Q 014691           23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVP-TLFTYRPIWEGGQYDGDENERV  101 (420)
Q Consensus        23 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~P-iI~T~R~~~eGG~~~~~~~~~~  101 (420)
                      .|++++.+-..++++.++.++.+.+.|+|++|.-..... ....+.++.+.+....+ ++..+|....|       ..  
T Consensus         3 ~~~l~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~-~~~~~~i~~l~~~~~~~~ii~D~kl~d~g-------~~--   72 (430)
T PRK07028          3 RPILQVALDLLELDRAVEIAKEAVAGGADWIEAGTPLIK-SEGMNAIRTLRKNFPDHTIVADMKTMDTG-------AI--   72 (430)
T ss_pred             CceEEEEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHH-HhhHHHHHHHHHHCCCCEEEEEeeeccch-------HH--
Confidence            678889999999999999999988899999996321110 01123466665554444 55567754332       12  


Q ss_pred             HHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 014691          102 DVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA  173 (420)
Q Consensus       102 ~ll~~~~~~~~d~iDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia  173 (420)
                       .++.+.+.|+++|-+-...++....... ..++.+.+++.-..   .+++.   .+.++.+.+.|+|++++-
T Consensus        73 -~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~---s~~t~---~e~~~~a~~~GaD~I~~~  138 (430)
T PRK07028         73 -EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLI---NVPDP---VKRAVELEELGVDYINVH  138 (430)
T ss_pred             -HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEec---CCCCH---HHHHHHHHhcCCCEEEEE
Confidence             4556788899998864322211111121 22234667765211   11111   223566667899999875

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=93.17  E-value=0.15  Score=52.78  Aligned_cols=40  Identities=35%  Similarity=0.520  Sum_probs=35.3

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      .+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++.
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l  215 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKI  215 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            467899999997 8899999999999999999999987654

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=93.11  E-value=2.3  Score=38.97  Aligned_cols=106  Identities=27%  Similarity=0.386  Sum_probs=61.8

Q ss_pred             HHHHHHHHhhhhcCCCEEEEEecCCCCCCch---hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 014691           36 DKMVVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA  112 (420)
Q Consensus        36 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~  112 (420)
                      ++....++.+.+.|+++|.+|.=.+.+.+-.   ..+..+.+..+.|+++.-               +   .+.+.+.|+
T Consensus        13 ~~~~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~---------------~---~~la~~~g~   74 (196)
T TIGR00693        13 ADLLNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIVND---------------R---VDLALALGA   74 (196)
T ss_pred             ccHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEEEC---------------H---HHHHHHcCC
Confidence            3466777778889999999996433321111   122333344578888852               1   235566788


Q ss_pred             cEEEEEcc-cccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          113 DYIDVELQ-VAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       113 d~iDiEl~-~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      +-|=+... ...+..+.+   ...+..|-+|.|+.      +|+    .++.+.|+|++++
T Consensus        75 ~GvHl~~~~~~~~~~r~~---~~~~~~ig~s~h~~------~e~----~~a~~~g~dyi~~  122 (196)
T TIGR00693        75 DGVHLGQDDLPASEARAL---LGPDKIIGVSTHNL------EEL----AEAEAEGADYIGF  122 (196)
T ss_pred             CEEecCcccCCHHHHHHh---cCCCCEEEEeCCCH------HHH----HHHhHcCCCEEEE
Confidence            76655322 222222222   23456888999953      333    3455689999997

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.10  E-value=0.75  Score=45.25  Aligned_cols=119  Identities=18%  Similarity=0.307  Sum_probs=75.9

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD---  344 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~---  344 (420)
                      ....+++|++.....++-    +++.+.++.+ .++.+.|+-|-+|...    ++|+    -+.+.+++.-.=-  |   
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~----~id~----~~i~~~I~p~KDV--DGl~  123 (284)
T PRK14193         54 HRDCAEVGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPK----HLDE----NAVLERIDPAKDA--DGLH  123 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH----HHHHhcCCcccCc--cCCC
Confidence            446889999987666553    3566677777 4677999999999752    2221    1122233222100  1   


Q ss_pred             ----CeEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHh--CCCeEEEEeC
Q 014691          345 ----GKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKA--KGARVVIANR  412 (420)
Q Consensus       345 ----g~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~--~g~~i~v~nR  412 (420)
                          |+++ |.    -.--.|++.-|+..           +.+++||+++|||.+. +|+-++.-|.+  .++.|+++..
T Consensus       124 ~~n~g~l~~~~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs  192 (284)
T PRK14193        124 PTNLGRLVLNEPAPLPCTPRGIVHLLRRY-----------DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHT  192 (284)
T ss_pred             hhhhhHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCC
Confidence                1111 11    11245556655543           2678999999999877 99999998887  6889998884

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=93.08  E-value=2.9  Score=38.41  Aligned_cols=109  Identities=17%  Similarity=0.213  Sum_probs=63.8

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecC---CCCCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHH
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDG---LKNFNP-RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERV  101 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~---l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~  101 (420)
                      |.++|..-|..++.++++.+.+.|+|++++|.=-   .+.... .+.++.+++..+.|+.+.+-..        +.+.  
T Consensus         2 ~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~--------d~~~--   71 (211)
T cd00429           2 IAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVE--------NPER--   71 (211)
T ss_pred             ceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeC--------CHHH--
Confidence            5677888999999999999989999999998521   221111 2345566544445664443321        2222  


Q ss_pred             HHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEccc
Q 014691          102 DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHN  145 (420)
Q Consensus       102 ~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~  145 (420)
                       .++.+.+.|+|+|=|=....+.....+...+..+.+++++.|.
T Consensus        72 -~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~  114 (211)
T cd00429          72 -YIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNP  114 (211)
T ss_pred             -HHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecC
Confidence             3556668889986442222122222222223457788888763

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.04  E-value=0.5  Score=46.78  Aligned_cols=124  Identities=18%  Similarity=0.263  Sum_probs=76.0

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHH--HhhhhcccHHHHHhcceeEEEEeccCC
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i--~~~~d~l~~~A~~iGAvNTi~~~~~~g  345 (420)
                      ...++++|++.....++.    +++...++.+ .++...|+-|-+|....+  ...++.+++. +.+-..+..-    -|
T Consensus        53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g  127 (297)
T PRK14167         53 QRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA-KDVDGFHPEN----VG  127 (297)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc-cCcccCChhh----hH
Confidence            457899999987766654    2577777777 567899999999975321  1111111110 1111111110    01


Q ss_pred             eEE-EEe----cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhC----CCeEEEEeC
Q 014691          346 KLF-GYN----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAK----GARVVIANR  412 (420)
Q Consensus       346 ~l~-G~N----TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~----g~~i~v~nR  412 (420)
                      +++ |.+    .--.|++.-|+..           +.+++||+|+|||.+. +||-++.-|.+.    ++.|+++..
T Consensus       128 ~l~~g~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs  193 (297)
T PRK14167        128 RLVAGDARFKPCTPHGIQKLLAAA-----------GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHS  193 (297)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCC
Confidence            111 111    1245556655543           2578999999999877 999999988877    678888853

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.03  E-value=0.56  Score=46.19  Aligned_cols=119  Identities=21%  Similarity=0.295  Sum_probs=76.8

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCCeE
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKL  347 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g~l  347 (420)
                      ....+++|++.....++.    +++.+.++.+ .++...|+-|-.|+-.    ++|+   . +.+.+++.-.=-  || +
T Consensus        53 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~----~id~---~-~i~~~I~p~KDV--DG-l  121 (286)
T PRK14184         53 ERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPK----GLDS---Q-RCLELIDPAKDV--DG-F  121 (286)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCC----CCCH---H-HHHhccCcccCc--cc-C
Confidence            346899999987766653    3577777777 4678999999999743    2332   1 122222222100  11 1


Q ss_pred             EEEe-------------cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHh----CCCeEEE
Q 014691          348 FGYN-------------TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKA----KGARVVI  409 (420)
Q Consensus       348 ~G~N-------------TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~----~g~~i~v  409 (420)
                      +-+|             .--.|++.-|+..           +.+++||+++|+|.+. +|+-++.-|.+    .++.|++
T Consensus       122 ~~~N~g~l~~~~~~~~PcTp~av~~lL~~~-----------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~  190 (286)
T PRK14184        122 HPENMGRLALGLPGFRPCTPAGVMTLLERY-----------GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTV  190 (286)
T ss_pred             CHhhHHHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEE
Confidence            1111             1234566655543           2678999999999877 99999999988    7888888


Q ss_pred             EeCC
Q 014691          410 ANRT  413 (420)
Q Consensus       410 ~nR~  413 (420)
                      +..+
T Consensus       191 ~hs~  194 (286)
T PRK14184        191 CHSR  194 (286)
T ss_pred             EeCC
Confidence            8654

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=93.02  E-value=0.12  Score=59.26  Aligned_cols=35  Identities=29%  Similarity=0.374  Sum_probs=32.2

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+++|+|||+|.+|.++|+.|+..|.+|+|+.+..
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~  570 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE  570 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            46899999999999999999999999999998753

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=93.02  E-value=8.3  Score=38.89  Aligned_cols=198  Identities=14%  Similarity=0.134  Sum_probs=110.1

Q ss_pred             HHHHHHHHhhhhcCCCEEEE---------EecC-CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691           36 DKMVVDMGKANASGADLVEI---------RLDG-LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVL  104 (420)
Q Consensus        36 ~e~~~~~~~~~~~~~D~vEl---------RlD~-l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (420)
                      ++.+.-++...+.|+|.||+         -+++ +....+.+.++.+++.. +..+..-++.    |..  .    .+-+
T Consensus        24 ~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~p----g~~--~----~~dl   93 (333)
T TIGR03217        24 EQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLP----GIG--T----VHDL   93 (333)
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEecc----Ccc--C----HHHH
Confidence            34444444445679999999         3333 33333445566665433 2333322332    211  1    2346


Q ss_pred             HHHHHhCCcEEEEEccccc-chhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CCHH
Q 014691          105 RLAMELGADYIDVELQVAR-EFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA--LDIT  180 (420)
Q Consensus       105 ~~~~~~~~d~iDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~--~s~~  180 (420)
                      +.+.+.|++.|-|=....+ +...+.. ..+..+..+.++.-+-... +.+++.+..+.+.++|||.+=|+=+.  -+++
T Consensus        94 ~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~-~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~  172 (333)
T TIGR03217        94 KAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMT-PPEKLAEQAKLMESYGADCVYIVDSAGAMLPD  172 (333)
T ss_pred             HHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCC-CHHHHHHHHHHHHhcCCCEEEEccCCCCCCHH
Confidence            8888999999887654433 2222222 2344566766554432222 45789999999999999999888555  4689


Q ss_pred             HHHHHHHHhccC-C--CCEEEEecCCcc--hhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691          181 DVARVFQITVHS-Q--VPIIGLVMGERG--LISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (420)
Q Consensus       181 D~~~ll~~~~~~-~--~p~I~~~MG~~G--~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~  245 (420)
                      |+.++.+.+... +  +|+=..+=-.+|  ...=+..-.-|....=+++.. -....|+.+++++...++
T Consensus       173 ~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G-~G~~aGN~~~E~lv~~l~  241 (333)
T TIGR03217       173 DVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRG-LGAGAGNAPLEVFVAVLD  241 (333)
T ss_pred             HHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEeeccc-ccccccCccHHHHHHHHH
Confidence            999988876543 2  555433322222  222222222343333334332 124688888888765554

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=93.01  E-value=1.7  Score=40.68  Aligned_cols=125  Identities=22%  Similarity=0.320  Sum_probs=70.7

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCC-CCCch-hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH---HHHHHH
Q 014691           32 GESVDKMVVDMGKANASGADLVEIRLDGLK-NFNPR-ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER---VDVLRL  106 (420)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~---~~ll~~  106 (420)
                      ..+++++.    .+.+.|||-|||.-++-. .+.|. ..++.+++..++|+-+-+|.+  ||-|-.++++.   .+-++.
T Consensus         7 v~s~~~a~----~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRpr--~gdF~Ys~~E~~~M~~dI~~   80 (201)
T PF03932_consen    7 VESLEDAL----AAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRPR--GGDFVYSDEEIEIMKEDIRM   80 (201)
T ss_dssp             ESSHHHHH----HHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--SS--SS-S---HHHHHHHHHHHHH
T ss_pred             eCCHHHHH----HHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECCC--CCCccCCHHHHHHHHHHHHH
Confidence            45555554    445779999999998643 33442 346666677899999999954  45566666443   344566


Q ss_pred             HHHhCCcEEEEEc-----ccccchhHHHhhcCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCC
Q 014691          107 AMELGADYIDVEL-----QVAREFNDSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGAD  168 (420)
Q Consensus       107 ~~~~~~d~iDiEl-----~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tP~~~el~~~~~~~~~~gaD  168 (420)
                      +.++|+|-+=+=.     ..+.+..+.+... .++..+..  |- |+.+++.   .+-++++.++|.+
T Consensus        81 ~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~-a~~~~~tF--HRAfD~~~d~---~~al~~L~~lG~~  142 (201)
T PF03932_consen   81 LRELGADGFVFGALTEDGEIDEEALEELIEA-AGGMPVTF--HRAFDEVPDP---EEALEQLIELGFD  142 (201)
T ss_dssp             HHHTT-SEEEE--BETTSSB-HHHHHHHHHH-HTTSEEEE---GGGGGSSTH---HHHHHHHHHHT-S
T ss_pred             HHHcCCCeeEEEeECCCCCcCHHHHHHHHHh-cCCCeEEE--eCcHHHhCCH---HHHHHHHHhcCCC
Confidence            6778888765532     3344556666643 24666665  64 9999874   4456667677855

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=92.93  E-value=0.11  Score=49.53  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=31.5

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      ++..+|+|+|.||+|.-++-+|+.-|+ +|++++-+
T Consensus        28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D   63 (263)
T COG1179          28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMD   63 (263)
T ss_pred             HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecc
Confidence            566799999999999999999999999 99998753

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=92.91  E-value=0.13  Score=55.30  Aligned_cols=35  Identities=37%  Similarity=0.463  Sum_probs=32.2

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ..|++|+|||+|.+|.++++.|...|++|+|+++.
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~  169 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG  169 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            46899999999999999999999999999999864

>PRK12581 oxaloacetate decarboxylase; Provisional

Probab=92.82  E-value=15  Score=38.86  Aligned_cols=208  Identities=15%  Similarity=0.140  Sum_probs=125.0

Q ss_pred             HHHHHHHHHhhhhcCCCEEEE----EecC---CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHH
Q 014691           35 VDKMVVDMGKANASGADLVEI----RLDG---LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRL  106 (420)
Q Consensus        35 ~~e~~~~~~~~~~~~~D~vEl----RlD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~  106 (420)
                      .++++.-+...-..|.+.+|.    ..|-   +...+|.+.|+.+++.. +.|+-.=+|..+==|..+-+++-...+++.
T Consensus        34 t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~  113 (468)
T PRK12581         34 IEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISL  113 (468)
T ss_pred             HHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHH
Confidence            344444444444569999999    8882   23336677788777654 456655577332224444455555667899


Q ss_pred             HHHhCCcEEEEEcccc--cchhHHHhhcCCCCcE--EEEEcccCCCCC--CHHHHHHHHHHHHHcCCCEEEEEeec--CC
Q 014691          107 AMELGADYIDVELQVA--REFNDSIRGKKPEKCK--VIVSSHNYQYTP--SVEDLSNLVARIQASGADIVKFATTA--LD  178 (420)
Q Consensus       107 ~~~~~~d~iDiEl~~~--~~~~~~l~~~~~~~~k--iI~S~H~f~~tP--~~~el~~~~~~~~~~gaDivKia~~~--~s  178 (420)
                      +.+.|+|.+=|=-.+.  +.....+...++.|..  +-++|-   ..|  +.+-+.+..+++.+.|||.+=|+=|+  -+
T Consensus       114 a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt---~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~  190 (468)
T PRK12581        114 SAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYT---TSPVHTLNYYLSLVKELVEMGADSICIKDMAGILT  190 (468)
T ss_pred             HHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEE---eCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcC
Confidence            9999988776622222  1111222222233333  344442   245  45668889999999999999888776  46


Q ss_pred             HHHHHHHHHHhccC-CCCEEEE--ecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691          179 ITDVARVFQITVHS-QVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (420)
Q Consensus       179 ~~D~~~ll~~~~~~-~~p~I~~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~  246 (420)
                      +.++.++.+.++.. +.|+-..  +.--++..+=+..-.-|....=+++..- +...||++.+++...++-
T Consensus       191 P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~-g~gagN~~tE~lv~~L~~  260 (468)
T PRK12581        191 PKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPF-SEGTSQPATESMYLALKE  260 (468)
T ss_pred             HHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeecccc-CCCcCChhHHHHHHHHHh
Confidence            88998888876543 5665433  4444444444544455554444555431 223579999988877663

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

Probab=92.80  E-value=6.3  Score=38.31  Aligned_cols=194  Identities=18%  Similarity=0.130  Sum_probs=112.1

Q ss_pred             HHHHHHHHHhhhhcCCCEEEEEecCCCCCCc--hhHHHHHHhhCCCcEEEE-eccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691           35 VDKMVVDMGKANASGADLVEIRLDGLKNFNP--RENIKTLIKESPVPTLFT-YRPIWEGGQYDGDENERVDVLRLAMELG  111 (420)
Q Consensus        35 ~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~--~~~l~~l~~~~~~PiI~T-~R~~~eGG~~~~~~~~~~~ll~~~~~~~  111 (420)
                      .++.++-++...+.|+|.||.=-   +...+  .+.++.+.+....+-+++ .|..         .    +=++.+.+.|
T Consensus        21 ~~~k~~i~~~L~~~Gv~~IEvG~---P~~~~~~~~~~~~l~~~~~~~~v~~~~r~~---------~----~di~~a~~~g   84 (262)
T cd07948          21 TEDKIEIAKALDAFGVDYIELTS---PAASPQSRADCEAIAKLGLKAKILTHIRCH---------M----DDARIAVETG   84 (262)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEC---CCCCHHHHHHHHHHHhCCCCCcEEEEecCC---------H----HHHHHHHHcC
Confidence            34444445555677999999963   32222  223334433222244444 3421         1    1256677889


Q ss_pred             CcEEEEEccccc------------chhHHH----hhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEee
Q 014691          112 ADYIDVELQVAR------------EFNDSI----RGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT  175 (420)
Q Consensus       112 ~d~iDiEl~~~~------------~~~~~l----~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~  175 (420)
                      ++.|.+-+..++            +.++.+    ..++..+.+|-++.-+-..+| .+++.+.++++.+.|+|.+-++=+
T Consensus        85 ~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~-~~~l~~~~~~~~~~g~~~i~l~Dt  163 (262)
T cd07948          85 VDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSD-LVDLLRVYRAVDKLGVNRVGIADT  163 (262)
T ss_pred             cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCC-HHHHHHHHHHHHHcCCCEEEECCc
Confidence            999998654321            222222    223456778888876644555 567999999999999998877754


Q ss_pred             c--CCHHHHHHHHHHhccC-CCCEEEEe--cCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691          176 A--LDITDVARVFQITVHS-QVPIIGLV--MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (420)
Q Consensus       176 ~--~s~~D~~~ll~~~~~~-~~p~I~~~--MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~  246 (420)
                      .  -+++++.++++.+++. +.|+-..+  .--+|...=+..-..|..+.=+++.. -.-..|..+++++...++.
T Consensus       164 ~G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~G-lGeraGn~~~e~~~~~l~~  238 (262)
T cd07948         164 VGIATPRQVYELVRTLRGVVSCDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLG-IGERNGITPLGGLIARMYT  238 (262)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccc-cccccCCccHHHHHHHHHh
Confidence            4  5789998888876543 55654433  22233333333334454333233332 1135899999888877654

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.74  E-value=0.53  Score=46.59  Aligned_cols=124  Identities=23%  Similarity=0.290  Sum_probs=75.9

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHH--HhhhhcccHHHHHhcceeEEEEeccCC
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i--~~~~d~l~~~A~~iGAvNTi~~~~~~g  345 (420)
                      ....+++|++..-..++.    +++.+.++.+ .++...|+-|-.|.-..+  ...++.+++. +.+-..+..-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g  128 (297)
T PRK14186         54 EKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD-KDADGLHPLN----LG  128 (297)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCChhh----HH
Confidence            446889999986555542    3677777777 467799999999974322  1111111110 1111111110    01


Q ss_pred             eE-EEE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691          346 KL-FGY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       346 ~l-~G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR  412 (420)
                      ++ .|.    -.--.|++.-|+..           +.+++||+|+|||.+. +|+-++.-|.+.|+.|+++..
T Consensus       129 ~l~~~~~~~~PcTp~aii~lL~~~-----------~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs  190 (297)
T PRK14186        129 RLVKGEPGLRSCTPAGVMRLLRSQ-----------QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHS  190 (297)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCC
Confidence            11 111    11245666665543           2678999999999877 999999999999999988863

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=92.72  E-value=0.13  Score=58.64  Aligned_cols=36  Identities=39%  Similarity=0.379  Sum_probs=33.0

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+|+|+|||+|.+|.++|+.|+..|.+|+|+.+..
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~  572 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE  572 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence            468999999999999999999999999999998753

>PRK06484 short chain dehydrogenase; Validated

Probab=92.66  E-value=0.16  Score=53.74  Aligned_cols=42  Identities=29%  Similarity=0.470  Sum_probs=36.6

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      ...||.++|.|+ ||.|++++..|.+.|++|++++|+.++.++
T Consensus       266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~  308 (520)
T PRK06484        266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKK  308 (520)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            347899999996 789999999999999999999999876543

>PRK12831 putative oxidoreductase; Provisional

Probab=92.64  E-value=0.16  Score=53.37  Aligned_cols=36  Identities=33%  Similarity=0.303  Sum_probs=32.8

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      -.+++++|||+|.+|-++++.|..+|.+|+|+.+..
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~  173 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH  173 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            468999999999999999999999999999998753

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.63  E-value=0.15  Score=55.77  Aligned_cols=35  Identities=31%  Similarity=0.305  Sum_probs=32.8

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+|+|+|||+|.+|.++++.|...|.+|+|+.|..
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence            58999999999999999999999999999999875

>PRK14031 glutamate dehydrogenase; Provisional

Probab=92.57  E-value=0.32  Score=50.78  Aligned_cols=50  Identities=26%  Similarity=0.347  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEE
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIA  410 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~  410 (420)
                      ++|.+.+++..+...       +.+++|++|+|.|.|-+|..++..|.+.|++|+.+
T Consensus       208 g~Gv~~~~~~~~~~~-------g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaV  257 (444)
T PRK14031        208 GYGNIYFLMEMLKTK-------GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTM  257 (444)
T ss_pred             HHHHHHHHHHHHHhc-------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            788888887776532       35789999999999999999999999999976653

>PRK11613 folP dihydropteroate synthase; Provisional

Probab=92.53  E-value=3  Score=41.08  Aligned_cols=144  Identities=16%  Similarity=0.207  Sum_probs=84.9

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCC----CCCchhHHHHHH-------hhCCCcEEEEeccCCCCCCCCCCHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLK----NFNPRENIKTLI-------KESPVPTLFTYRPIWEGGQYDGDENERVD  102 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~l~~l~-------~~~~~PiI~T~R~~~eGG~~~~~~~~~~~  102 (420)
                      +.+++++++.+..+.|||+|.+=--.-.    ..++.++++++.       +..+.|  +.+-|            .+.+
T Consensus        36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~--ISIDT------------~~~~  101 (282)
T PRK11613         36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVW--ISVDT------------SKPE  101 (282)
T ss_pred             CHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe--EEEEC------------CCHH
Confidence            6788999999988999999988743321    122233433322       222333  45553            2346


Q ss_pred             HHHHHHHhCCcEE-EEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCH---------------HHHHHHHHHHHHcC
Q 014691          103 VLRLAMELGADYI-DVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSV---------------EDLSNLVARIQASG  166 (420)
Q Consensus       103 ll~~~~~~~~d~i-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~---------------~el~~~~~~~~~~g  166 (420)
                      ..+.|++.|+++| ||---..++..+.+.   +.+..+|+- |. .++|..               +.+.+.++.+.+.|
T Consensus       102 va~~AL~~GadiINDI~g~~d~~~~~~~a---~~~~~vVlm-h~-~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~G  176 (282)
T PRK11613        102 VIRESAKAGAHIINDIRSLSEPGALEAAA---ETGLPVCLM-HM-QGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAG  176 (282)
T ss_pred             HHHHHHHcCCCEEEECCCCCCHHHHHHHH---HcCCCEEEE-cC-CCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcC
Confidence            8889999999998 673322333343332   246677766 43 233321               24556677787888


Q ss_pred             CCEEEEEe-----ecCCHHHHHHHHHHhcc---CCCCE
Q 014691          167 ADIVKFAT-----TALDITDVARVFQITVH---SQVPI  196 (420)
Q Consensus       167 aDivKia~-----~~~s~~D~~~ll~~~~~---~~~p~  196 (420)
                      .+==+|..     ..++.++++.+++-+..   .+.|+
T Consensus       177 I~~~~IilDPGiGF~k~~~~n~~ll~~l~~l~~lg~Pi  214 (282)
T PRK11613        177 IAKEKLLLDPGFGFGKNLSHNYQLLARLAEFHHFNLPL  214 (282)
T ss_pred             CChhhEEEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCE
Confidence            54235554     34688899888876443   45674

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=92.51  E-value=0.22  Score=50.07  Aligned_cols=39  Identities=44%  Similarity=0.614  Sum_probs=35.9

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|+|+|+||.|-.++..++.+|++|+.++|+++|.+
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e  204 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLE  204 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHH
Confidence            488999999999999999988889999999999999875

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=92.47  E-value=0.9  Score=46.06  Aligned_cols=119  Identities=26%  Similarity=0.328  Sum_probs=76.0

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD---  344 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~---  344 (420)
                      ....+++|++..-..++-    +++.+.++.+ .++...|+-|-.|...    ++|+    -+.+.+++.-.=-  |   
T Consensus       125 ~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPLP~----~id~----~~i~~aI~P~KDV--DGl~  194 (364)
T PLN02616        125 KKACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPS----HMDE----QNILNAVSIEKDV--DGFH  194 (364)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCC----CCCH----HHHHhccCcccCc--ccCC
Confidence            357889999875444432    2677777777 4677999999999853    2222    1122222222110  1   


Q ss_pred             ----CeEE-EE-e-----cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691          345 ----GKLF-GY-N-----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       345 ----g~l~-G~-N-----TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR  412 (420)
                          |++. |. +     .--.|++.-|+..           +.+++||+|+|||-+. +|+-++.-|.+.|+.|+++..
T Consensus       195 p~N~G~L~~g~~~~~f~PCTp~avielL~~y-----------~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs  263 (364)
T PLN02616        195 PLNIGRLAMRGREPLFVPCTPKGCIELLHRY-----------NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  263 (364)
T ss_pred             hhhhHHHhcCCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCC
Confidence                1221 11 1     1145666666543           2678999999999877 999999999999999998874

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=92.46  E-value=0.62  Score=46.14  Aligned_cols=119  Identities=19%  Similarity=0.266  Sum_probs=76.0

Q ss_pred             HHHHHHcCCCceeeccc--c--ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691          273 NEAFKSVGFNGVFVHLL--V--DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD---  344 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~--~--~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~---  344 (420)
                      ....+++|++..-..++  +  +++.+.++.+ .++++.|+-|-.|.-.    ++|+    -+.+.+++.-.=-  |   
T Consensus        61 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~----~id~----~~i~~~I~p~KDV--DGl~  130 (299)
T PLN02516         61 RKACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPK----HINE----EKILNEISLEKDV--DGFH  130 (299)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCC----CcCH----HHHHhccCccccc--CccC
Confidence            34688999997655554  2  3677777777 5678999999999642    2222    1122222222100  1   


Q ss_pred             ----CeEE-EE------ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691          345 ----GKLF-GY------NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       345 ----g~l~-G~------NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR  412 (420)
                          |++. |.      -.--.|++.-|+..           +.+++||+|+|||-+. +||-++.-|.+.|+.|++++.
T Consensus       131 ~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs  199 (299)
T PLN02516        131 PLNIGKLAMKGREPLFLPCTPKGCLELLSRS-----------GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHS  199 (299)
T ss_pred             HhhHhhHhcCCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCC
Confidence                2222 11      11134555555442           2678999999999877 999999999999999999874

>cd00945 Aldolase_Class_I Class I aldolases

Probab=92.44  E-value=5.3  Score=35.97  Aligned_cols=91  Identities=19%  Similarity=0.178  Sum_probs=61.9

Q ss_pred             EEEEeecCCC----HHHHHHHHHhhhhcCCCEEEEEecCCCCCC--c---hhHHHHHHhh--CCCcEEEEeccCCCCCCC
Q 014691           25 LICVPIMGES----VDKMVVDMGKANASGADLVEIRLDGLKNFN--P---RENIKTLIKE--SPVPTLFTYRPIWEGGQY   93 (420)
Q Consensus        25 ~icv~l~~~~----~~e~~~~~~~~~~~~~D~vElRlD~l~~~~--~---~~~l~~l~~~--~~~PiI~T~R~~~eGG~~   93 (420)
                      .+.+-+...+    .++..++++.+.+.|+|.+.+-..+....+  .   .+.++.+.+.  .++|+++..+....    
T Consensus        50 ~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~----  125 (201)
T cd00945          50 PVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL----  125 (201)
T ss_pred             eEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC----
Confidence            3445666777    899999999999999999999877653222  1   2334455555  48999988875432    


Q ss_pred             CCCHHHHHHHHHHHHHhCCcEEEEEcc
Q 014691           94 DGDENERVDVLRLAMELGADYIDVELQ  120 (420)
Q Consensus        94 ~~~~~~~~~ll~~~~~~~~d~iDiEl~  120 (420)
                       .+.+.-.++.+.+...|+++|..-..
T Consensus       126 -~~~~~~~~~~~~~~~~g~~~iK~~~~  151 (201)
T cd00945         126 -KTADEIAKAARIAAEAGADFIKTSTG  151 (201)
T ss_pred             -CCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence             34455555555566678999887654

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=92.40  E-value=0.18  Score=53.11  Aligned_cols=36  Identities=33%  Similarity=0.424  Sum_probs=32.8

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+++|+|||+|.+|.++++.|...|.+|+|+.+..
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~  176 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD  176 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            357899999999999999999999999999999864

>PRK06701 short chain dehydrogenase; Provisional

Probab=92.39  E-value=0.22  Score=48.66  Aligned_cols=38  Identities=29%  Similarity=0.428  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~   80 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE   80 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4577899999996 7799999999999999999999875

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=92.37  E-value=0.37  Score=45.87  Aligned_cols=52  Identities=27%  Similarity=0.341  Sum_probs=42.1

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEE-EEeC
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANR  412 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~-v~nR  412 (420)
                      ++|...+++..+...       ..++++++++|.|.|.+|+.++..|.+.|++|+ |.+.
T Consensus        11 g~Gv~~~~~~~~~~~-------~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076          11 GRGVAYATREALKKL-------GIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             hHHHHHHHHHHHHhc-------CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            678877777665421       246789999999999999999999999999765 7776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PLN02852 ferredoxin-NADP+ reductase

Probab=92.35  E-value=0.17  Score=53.60  Aligned_cols=36  Identities=33%  Similarity=0.258  Sum_probs=32.0

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHh--CCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKA--KGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~--~g~~i~v~nR~~  414 (420)
                      ..+++|+|||+|.+|-.+++.|.+  .|++|+|+.|.+
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p   61 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP   61 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence            357899999999999999999986  688999999875

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=92.26  E-value=0.21  Score=55.16  Aligned_cols=42  Identities=36%  Similarity=0.526  Sum_probs=37.1

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..+++|++||.|+ ||.|++++..|.+.|++|.+++|+.++++
T Consensus       410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~  452 (676)
T TIGR02632       410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAE  452 (676)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            4578999999996 88999999999999999999999977654

>PRK07201 short chain dehydrogenase; Provisional

Probab=92.26  E-value=0.19  Score=54.70  Aligned_cols=42  Identities=36%  Similarity=0.561  Sum_probs=37.2

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++
T Consensus       367 ~~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~  409 (657)
T PRK07201        367 GPLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALD  409 (657)
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            3577899999996 88999999999999999999999987754

>PRK08324 short chain dehydrogenase; Validated

Probab=92.25  E-value=0.19  Score=55.47  Aligned_cols=42  Identities=48%  Similarity=0.589  Sum_probs=37.0

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..+.||++||.|+ ||.|++++..|.+.|++|++++|+.++.+
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~  460 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAE  460 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHH
Confidence            3467899999995 99999999999999999999999987654

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.21  E-value=1.1  Score=44.30  Aligned_cols=118  Identities=21%  Similarity=0.343  Sum_probs=74.2

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD---  344 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~---  344 (420)
                      ...++++|++.....++-    +++.+.++.+ .++.+.|+-|-.|...    ++|+.    +.+.+++.-.=-  |   
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~----~i~~~----~i~~~I~p~KDV--DGl~  122 (293)
T PRK14185         53 VKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPK----HISEQ----KVIEAIDYRKDV--DGFH  122 (293)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCC----CCCHH----HHHhccCcccCc--CCCC
Confidence            457899999986655543    3566667767 5678999999999753    22211    111222221100  1   


Q ss_pred             ----CeEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhC----CCeEEEE
Q 014691          345 ----GKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAK----GARVVIA  410 (420)
Q Consensus       345 ----g~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~----g~~i~v~  410 (420)
                          |+++ |.    -.--.|++.-|+..           +.+++||+|+|||.+. +||-++.-|.+.    ++.|+++
T Consensus       123 ~~N~g~l~~~~~~~~PcTp~av~~lL~~~-----------~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvc  191 (293)
T PRK14185        123 PINVGRMSIGLPCFVSATPNGILELLKRY-----------HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVC  191 (293)
T ss_pred             HhhHHHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEe
Confidence                1221 11    11245556655543           2678999999999877 999999988887    5789988


Q ss_pred             e
Q 014691          411 N  411 (420)
Q Consensus       411 n  411 (420)
                      .
T Consensus       192 h  192 (293)
T PRK14185        192 H  192 (293)
T ss_pred             c
Confidence            5

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=92.17  E-value=1.8  Score=41.16  Aligned_cols=144  Identities=22%  Similarity=0.154  Sum_probs=85.3

Q ss_pred             HHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH-----HHHHHHHHHhC
Q 014691           37 KMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER-----VDVLRLAMELG  111 (420)
Q Consensus        37 e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~-----~~ll~~~~~~~  111 (420)
                      ++...++++.+.+++.|=+..-++.      .....+...+..+-+.++-  ..|..  .-+.+     ..-.+.+++.|
T Consensus        20 ~~~~~~~~a~~~~~~av~v~p~~~~------~~~~~~~~~~~~~~~vi~f--p~g~~--~~~~k~~~~~~~~ve~A~~~G   89 (236)
T PF01791_consen   20 DIKKLCREAIEYGFDAVCVTPGYVK------PAAELLAGSGVKVGLVIGF--PFGTS--TTEPKGYDQIVAEVEEAIRLG   89 (236)
T ss_dssp             HHHHHHHHHHHHTSSEEEEEGGGHH------HHHHHSTTSTSEEEEEEST--TTSSS--THHHHTCEEEHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHhCCCEEEECHHHHH------HHHHHhhccccccceEEEe--CCCCC--ccccccccchHHHHHHHHHcC
Confidence            6677777777788888866555432      2333333222233333442  22322  22455     67788999999


Q ss_pred             CcEEEEEccc---cc-------chhHHHh-hcCCCCcEEEEEcccCCCCCCHHH---------HHHHHHHHHHcCCCEEE
Q 014691          112 ADYIDVELQV---AR-------EFNDSIR-GKKPEKCKVIVSSHNYQYTPSVED---------LSNLVARIQASGADIVK  171 (420)
Q Consensus       112 ~d~iDiEl~~---~~-------~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~e---------l~~~~~~~~~~gaDivK  171 (420)
                      +|-||+=++.   ..       +.+..+. ..++.+.++|+= -    -|..++         +....+-+.++|||++|
T Consensus        90 Ad~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~----~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vK  164 (236)
T PF01791_consen   90 ADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-P----YLRGEEVADEKKPDLIARAARIAAELGADFVK  164 (236)
T ss_dssp             -SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-E----CECHHHBSSTTHHHHHHHHHHHHHHTT-SEEE
T ss_pred             CceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-E----ecCchhhcccccHHHHHHHHHHHHHhCCCEEE
Confidence            9999997765   11       1122222 235678898875 2    222223         55666666789999999


Q ss_pred             EEee---cCCHHHHHHHHHHhccCCCC
Q 014691          172 FATT---ALDITDVARVFQITVHSQVP  195 (420)
Q Consensus       172 ia~~---~~s~~D~~~ll~~~~~~~~p  195 (420)
                      .-+.   ..+.+|+..+.+.....+.|
T Consensus       165 t~tg~~~~~t~~~~~~~~~~~~~~~~p  191 (236)
T PF01791_consen  165 TSTGKPVGATPEDVELMRKAVEAAPVP  191 (236)
T ss_dssp             EE-SSSSCSHHHHHHHHHHHHHTHSST
T ss_pred             ecCCccccccHHHHHHHHHHHHhcCCC
Confidence            9877   44567887777777766777

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=92.15  E-value=6.2  Score=36.76  Aligned_cols=136  Identities=16%  Similarity=0.080  Sum_probs=84.1

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCC-HHHH
Q 014691           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGD-ENER  100 (420)
Q Consensus        22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~-~~~~  100 (420)
                      +.+++|+.+-..|.+++++-+++.. ...|+||.=.+++..+.+ +.++.+++..  ++++-+..      .... ...+
T Consensus         2 ~~~~l~~alD~~~~~~~~~~~~~~~-~~~~~vk~g~~l~~~~G~-~~v~~ir~~~--~i~~D~k~------~di~~~~~~   71 (215)
T PRK13813          2 KDSRIILALDVTDRERALKIAEELD-DYVDAIKVGWPLVLASGL-GIIEELKRYA--PVIADLKV------ADIPNTNRL   71 (215)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHhcc-ccCCEEEEcHHHHHhhCH-HHHHHHHhcC--CEEEEeec------cccHHHHHH
Confidence            5678999999999999999887653 347899999999876554 4566665443  55554442      1111 1222


Q ss_pred             HHHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCC-----HHHHHHHHHHHHHcCCCEEE
Q 014691          101 VDVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPS-----VEDLSNLVARIQASGADIVK  171 (420)
Q Consensus       101 ~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~-----~~el~~~~~~~~~~gaDivK  171 (420)
                        .++.+.+.|+|+|-+=.....+.+..+. ..++.+.++.+..+- . +|.     .+++.....-..+.|++..|
T Consensus        72 --~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~-~-~~~~~~~~~~~~~~v~~m~~e~G~~g~~  144 (215)
T PRK13813         72 --ICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEM-S-HPGALEFIQPHADKLAKLAQEAGAFGVV  144 (215)
T ss_pred             --HHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeC-C-CCCCCCCHHHHHHHHHHHHHHhCCCeEE
Confidence              2366778899999987765444333333 234556777654332 1 221     22344444555568888887

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=92.15  E-value=1.6  Score=42.27  Aligned_cols=153  Identities=15%  Similarity=0.119  Sum_probs=81.1

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 014691           33 ESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA  112 (420)
Q Consensus        33 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~  112 (420)
                      .+.+++.+-++++.+.++|.|=+---++..      .... ...+.++++++-...--|. ...........+.+++.|+
T Consensus        33 ~~~~~~~~~~~~a~~~~~~~v~~~p~~~~~------~~~~-~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~v~~al~~Ga  104 (258)
T TIGR01949        33 KGLVDIRKTVNEVAEGGADAVLLHKGIVRR------GHRG-YGKDVGLIIHLSASTSLSP-DPNDKRIVTTVEDAIRMGA  104 (258)
T ss_pred             CCcCCHHHHHHHHHhcCCCEEEeCcchhhh------cccc-cCCCCcEEEEEcCCCCCCC-CCCcceeeeeHHHHHHCCC
Confidence            355666666666667778877554333221      1111 2246777766521111111 1112234456888999999


Q ss_pred             cEEEEEcccc----cchhHHH---hh-cCCCCcEEEEEcc-----cCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH
Q 014691          113 DYIDVELQVA----REFNDSI---RG-KKPEKCKVIVSSH-----NYQYTPSVEDLSNLVARIQASGADIVKFATTALDI  179 (420)
Q Consensus       113 d~iDiEl~~~----~~~~~~l---~~-~~~~~~kiI~S~H-----~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~  179 (420)
                      +.||+.....    .+..+.+   .. .++.+..+|+-.+     .-+  .+.+++.+..+.+.+.|||++|.-..    
T Consensus       105 ~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~--~~~~~~~~~~~~a~~~GADyikt~~~----  178 (258)
T TIGR01949       105 DAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDD--RDPELVAHAARLGAELGADIVKTPYT----  178 (258)
T ss_pred             CEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCccccc--ccHHHHHHHHHHHHHHCCCEEeccCC----
Confidence            9999987632    1233222   22 2345666766322     222  22344545456777899999997532    


Q ss_pred             HHHHHHHHHhccCCCCEEEE
Q 014691          180 TDVARVFQITVHSQVPIIGL  199 (420)
Q Consensus       180 ~D~~~ll~~~~~~~~p~I~~  199 (420)
                      .+...+-++......|+.++
T Consensus       179 ~~~~~l~~~~~~~~iPVva~  198 (258)
T TIGR01949       179 GDIDSFRDVVKGCPAPVVVA  198 (258)
T ss_pred             CCHHHHHHHHHhCCCcEEEe
Confidence            23333334444456788664

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=92.13  E-value=0.27  Score=50.43  Aligned_cols=38  Identities=26%  Similarity=0.406  Sum_probs=35.0

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+.||++.|||.|.+|+.++..|..+|++|.++++..
T Consensus       112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~  149 (381)
T PRK00257        112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPR  149 (381)
T ss_pred             CCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcc
Confidence            57889999999999999999999999999999999754

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=92.11  E-value=0.45  Score=46.11  Aligned_cols=51  Identities=27%  Similarity=0.408  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEE-EEe
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IAN  411 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~-v~n  411 (420)
                      ++|.+.+++..+...       +.+++|++++|.|-|.+|+.++..|.++|++|+ |.+
T Consensus        18 g~Gv~~~~~~~~~~~-------~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD   69 (254)
T cd05313          18 GYGLVYFVEEMLKDR-------NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD   69 (254)
T ss_pred             HHHHHHHHHHHHHhc-------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            778888877766432       367899999999999999999999999999655 766

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases

Probab=92.08  E-value=15  Score=37.35  Aligned_cols=193  Identities=19%  Similarity=0.198  Sum_probs=110.5

Q ss_pred             HHHHHHHHHhhhhcCCCEEEEEecCCCCCC--chhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691           35 VDKMVVDMGKANASGADLVEIRLDGLKNFN--PRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (420)
Q Consensus        35 ~~e~~~~~~~~~~~~~D~vElRlD~l~~~~--~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~  111 (420)
                      .++.++-++...+.|+|.||.=   ++...  +.+.++.+.+.. +..+..-.|..             .+-++++.+.|
T Consensus        21 ~~~k~~ia~~L~~~Gv~~IEvG---~p~~~~~~~e~i~~i~~~~~~~~v~~~~r~~-------------~~di~~a~~~g   84 (363)
T TIGR02090        21 VEQKVEIARKLDELGVDVIEAG---FPIASEGEFEAIKKISQEGLNAEICSLARAL-------------KKDIDKAIDCG   84 (363)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEe---CCCCChHHHHHHHHHHhcCCCcEEEEEcccC-------------HHHHHHHHHcC
Confidence            4444444455556799999973   22111  233455554433 33344335521             12266778889


Q ss_pred             CcEEEEEcccccc------------hhH----HHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEee
Q 014691          112 ADYIDVELQVARE------------FND----SIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT  175 (420)
Q Consensus       112 ~d~iDiEl~~~~~------------~~~----~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~  175 (420)
                      ++.|.+-+..++-            .++    .+..++..+.++-++.-+...+ +.+.+.+.++++.+.|+|.+-++=+
T Consensus        85 ~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~-~~~~l~~~~~~~~~~g~~~i~l~DT  163 (363)
T TIGR02090        85 VDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRT-DIDFLIKVFKRAEEAGADRINIADT  163 (363)
T ss_pred             cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCC-CHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            9999885543211            112    1222345677888887665444 4678999999999999999888865


Q ss_pred             c--CCHHHHHHHHHHhcc-CCCCEEEEecCCcch--hhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691          176 A--LDITDVARVFQITVH-SQVPIIGLVMGERGL--ISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (420)
Q Consensus       176 ~--~s~~D~~~ll~~~~~-~~~p~I~~~MG~~G~--~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~  245 (420)
                      .  -+++++.++.+.+.. .+.|+=..+=-..|.  ..=+.+-.-|....=+++..- .-..|+.+++++...++
T Consensus       164 ~G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~Gl-GeraGN~~lE~vv~~L~  237 (363)
T TIGR02090       164 VGVLTPQKMEELIKKLKENVKLPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGI-GERAGNAALEEVVMALK  237 (363)
T ss_pred             CCccCHHHHHHHHHHHhcccCceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeecc-ccccccccHHHHHHHHH
Confidence            4  468899888877654 245554333333332  222223233443333344321 24689999988776655

Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=92.05  E-value=1.4  Score=41.99  Aligned_cols=142  Identities=19%  Similarity=0.159  Sum_probs=83.5

Q ss_pred             cEEEEeecCC----CHHHH-----HHHHHhhhhcCCCEEEEEecC---CCCCCc--hhHHHHHHh---hCCCcEEEEecc
Q 014691           24 TLICVPIMGE----SVDKM-----VVDMGKANASGADLVEIRLDG---LKNFNP--RENIKTLIK---ESPVPTLFTYRP   86 (420)
Q Consensus        24 ~~icv~l~~~----~~~e~-----~~~~~~~~~~~~D~vElRlD~---l~~~~~--~~~l~~l~~---~~~~PiI~T~R~   86 (420)
                      +.+|+.+..+    +.+.-     ..+++.+++.|||.|.+=+++   ..+...  .+.+.++.+   ...+|+|+-.-.
T Consensus        55 ~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l  134 (236)
T PF01791_consen   55 VKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL  134 (236)
T ss_dssp             SEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE
T ss_pred             cccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence            4677766555    45656     688999999999999999998   332111  123444443   347888766332


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcc-------cccchhHHHhh--cCCCCcEEEEEcccCCCCCCHHHHHH
Q 014691           87 IWEGGQYDGDENERVDVLRLAMELGADYIDVELQ-------VAREFNDSIRG--KKPEKCKVIVSSHNYQYTPSVEDLSN  157 (420)
Q Consensus        87 ~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~-------~~~~~~~~l~~--~~~~~~kiI~S~H~f~~tP~~~el~~  157 (420)
                      ..+.-.-...++.-....+.+.++|+|+|-.+..       .+.+.+.++..  ..+++++|++|     +-++.+++..
T Consensus       135 ~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~s-----GGi~~~~~~~  209 (236)
T PF01791_consen  135 RGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKAS-----GGIDAEDFLR  209 (236)
T ss_dssp             CHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEE-----SSSSHHHHHH
T ss_pred             CchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEe-----CCCChHHHHH
Confidence            2111000012233456677888899999999887       33444555543  12367778887     3445666666


Q ss_pred             HHHHHH---HcCCCEE
Q 014691          158 LVARIQ---ASGADIV  170 (420)
Q Consensus       158 ~~~~~~---~~gaDiv  170 (420)
                      .++.+.   +.|||..
T Consensus       210 ~l~~a~~~i~aGa~~~  225 (236)
T PF01791_consen  210 TLEDALEFIEAGADRI  225 (236)
T ss_dssp             SHHHHHHHHHTTHSEE
T ss_pred             HHHHHHHHHHcCChhH
Confidence            666555   7887763

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=92.05  E-value=0.92  Score=44.80  Aligned_cols=83  Identities=20%  Similarity=0.327  Sum_probs=57.2

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcC-CCEEEEEecCC--------CCCCc---hhHHHHHHhhCCCcEEEEeccCCCCCCC
Q 014691           26 ICVPIMGESVDKMVVDMGKANASG-ADLVEIRLDGL--------KNFNP---RENIKTLIKESPVPTLFTYRPIWEGGQY   93 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~-~D~vElRlD~l--------~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~   93 (420)
                      +.+.|.+.+.++...-++.+.+.| +|.||+=+=+-        ...++   .+.++.+++..+.|+.+-++.       
T Consensus        94 ~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-------  166 (301)
T PRK07259         94 IIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP-------  166 (301)
T ss_pred             EEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC-------
Confidence            567999999999999888888888 99999954110        00111   123444444458899888773       


Q ss_pred             CCCHHHHHHHHHHHHHhCCcEEEE
Q 014691           94 DGDENERVDVLRLAMELGADYIDV  117 (420)
Q Consensus        94 ~~~~~~~~~ll~~~~~~~~d~iDi  117 (420)
                        +.++..++.+.+.+.|+|+|++
T Consensus       167 --~~~~~~~~a~~l~~~G~d~i~~  188 (301)
T PRK07259        167 --NVTDIVEIAKAAEEAGADGLSL  188 (301)
T ss_pred             --CchhHHHHHHHHHHcCCCEEEE
Confidence              1134566777888889999987

>PRK07985 oxidoreductase; Provisional

Probab=92.01  E-value=0.23  Score=48.66  Aligned_cols=36  Identities=31%  Similarity=0.407  Sum_probs=31.9

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCC
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++..|+
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~   82 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLP   82 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCC
Confidence            467899999996 789999999999999998888765

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=91.97  E-value=0.27  Score=52.23  Aligned_cols=39  Identities=33%  Similarity=0.244  Sum_probs=35.0

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+.+|+|+|+|.+|.+++..+..+|++|++++++.++.+
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle  201 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKE  201 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            357999999999999999999999999999999887654

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=91.95  E-value=0.23  Score=52.00  Aligned_cols=37  Identities=32%  Similarity=0.288  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      +..+++++|||+|.+|.++++.|.+.|.+|+|+.+..
T Consensus       130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~  166 (449)
T TIGR01316       130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALH  166 (449)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            3467899999999999999999999999999999863

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.93  E-value=0.55  Score=46.48  Aligned_cols=121  Identities=21%  Similarity=0.291  Sum_probs=77.0

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD---  344 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~---  344 (420)
                      ...++++|++.....++.    +++.+.++.+ .++...|+-|-.|...    ++|+.    +.+.+++.-.=-  |   
T Consensus        53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~----~id~~----~i~~~I~p~KDV--DGl~  122 (295)
T PRK14174         53 AKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPK----QIDEF----AVTLAIDPAKDV--DGFH  122 (295)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCHH----HHHhcCCccccc--cccC
Confidence            457899999988777664    3677777777 5677999999999752    33321    111222222100  1   


Q ss_pred             ----CeEE-EE--e----cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHh----CCCeEE
Q 014691          345 ----GKLF-GY--N----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKA----KGARVV  408 (420)
Q Consensus       345 ----g~l~-G~--N----TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~----~g~~i~  408 (420)
                          |+++ |+  +    .--.|++.-|+..           +.+++||+|+|||.+. +||-++.-|.+    .|+.|+
T Consensus       123 ~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y-----------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt  191 (295)
T PRK14174        123 PENLGRLVMGHLDKCFVSCTPYGILELLGRY-----------NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVT  191 (295)
T ss_pred             hhhHHHHhcCCCCCCcCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEE
Confidence                1221 21  1    1234555555432           2578999999999887 99999988877    578888


Q ss_pred             EEeCCh
Q 014691          409 IANRTY  414 (420)
Q Consensus       409 v~nR~~  414 (420)
                      ++..+.
T Consensus       192 ~~hs~t  197 (295)
T PRK14174        192 ICHSAT  197 (295)
T ss_pred             EEeCCc
Confidence            887654

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=91.91  E-value=2.8  Score=39.51  Aligned_cols=119  Identities=21%  Similarity=0.210  Sum_probs=73.9

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (420)
                      .++..+...+.+++..-++.+.+.|.+++|+-+..   .+..+.++.+++..+- +++=.-+     .  .++    +-.
T Consensus        16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~---~~~~~~I~~l~~~~p~-~~IGAGT-----V--l~~----~~a   80 (212)
T PRK05718         16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRT---PAALEAIRLIAKEVPE-ALIGAGT-----V--LNP----EQL   80 (212)
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCC---ccHHHHHHHHHHHCCC-CEEEEee-----c--cCH----HHH
Confidence            35556889999999999998888899999999542   2223456666655432 2221111     1  122    346


Q ss_pred             HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       105 ~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      +.+++.|++|+=. -..+++.++...   +.+...|=...    ||+  |    +.++.++|+|++|+
T Consensus        81 ~~a~~aGA~Fivs-P~~~~~vi~~a~---~~~i~~iPG~~----Tpt--E----i~~a~~~Ga~~vKl  134 (212)
T PRK05718         81 AQAIEAGAQFIVS-PGLTPPLLKAAQ---EGPIPLIPGVS----TPS--E----LMLGMELGLRTFKF  134 (212)
T ss_pred             HHHHHcCCCEEEC-CCCCHHHHHHHH---HcCCCEeCCCC----CHH--H----HHHHHHCCCCEEEE
Confidence            6788899999833 444555554432   23444442221    443  2    55677899999999

>PRK05855 short chain dehydrogenase; Validated

Probab=91.86  E-value=0.23  Score=52.73  Aligned_cols=41  Identities=34%  Similarity=0.499  Sum_probs=36.3

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ...++++||+|+ ||.|++++..|++.|++|.+++|+.++.+
T Consensus       312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~  353 (582)
T PRK05855        312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAE  353 (582)
T ss_pred             cCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            456789999996 88999999999999999999999987654

>PRK06128 oxidoreductase; Provisional

Probab=91.84  E-value=0.27  Score=48.17  Aligned_cols=37  Identities=27%  Similarity=0.418  Sum_probs=31.9

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+++|++||.|+ ||.|++++..|.+.|++|.+..|+.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~   89 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPE   89 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCc
Confidence            367899999996 8899999999999999888877653

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=91.83  E-value=4.1  Score=36.67  Aligned_cols=107  Identities=25%  Similarity=0.318  Sum_probs=61.4

Q ss_pred             HHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHh---hCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 014691           36 DKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK---ESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA  112 (420)
Q Consensus        36 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~  112 (420)
                      .++...++.+...|++.|++|.-..........++.+.+   ..+.++++.               .+   ++.+.+.|+
T Consensus        12 ~~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~---------------~~---~~~a~~~g~   73 (196)
T cd00564          12 EDLLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPLIIN---------------DR---VDLALAVGA   73 (196)
T ss_pred             chHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe---------------Ch---HHHHHHcCC
Confidence            456666777777899999999754332111122333332   235677642               12   345677899


Q ss_pred             cEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          113 DYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       113 d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      +.+-++.....  ...+...+..+.++-+|.|    |+  ++    ..++...|+|++.+
T Consensus        74 ~~vh~~~~~~~--~~~~~~~~~~~~~~g~~~~----t~--~~----~~~~~~~g~d~i~~  121 (196)
T cd00564          74 DGVHLGQDDLP--VAEARALLGPDLIIGVSTH----SL--EE----ALRAEELGADYVGF  121 (196)
T ss_pred             CEEecCcccCC--HHHHHHHcCCCCEEEeeCC----CH--HH----HHHHhhcCCCEEEE
Confidence            99877753221  1222222334678888877    22  23    34555679999976

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=91.83  E-value=0.21  Score=52.28  Aligned_cols=36  Identities=39%  Similarity=0.379  Sum_probs=32.7

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      -.+++++|||+|.+|.++++.|...|.+|+|+++..
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~  173 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD  173 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence            457899999999999999999999999999999864

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=91.79  E-value=1.1  Score=45.10  Aligned_cols=119  Identities=20%  Similarity=0.283  Sum_probs=76.5

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCC--
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG--  345 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g--  345 (420)
                      ....+++|++..-..++-    +++.+.++.+ .++...|+-|-.|...    ++|+    -+.+.+++.-.=-  ||  
T Consensus       108 ~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~----hid~----~~i~~~I~p~KDV--DGl~  177 (345)
T PLN02897        108 IKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQ----HLDE----SKILNMVRLEKDV--DGFH  177 (345)
T ss_pred             HHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH----HHHHhccCcccCc--cCCC
Confidence            346888999887665553    2577777777 5678999999999752    2322    1122222222100  12  


Q ss_pred             -----eE-EEEe------cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691          346 -----KL-FGYN------TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       346 -----~l-~G~N------TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR  412 (420)
                           ++ .|.+      .--.|++.-|++.           +.+++||+|+|||-+. +|+-++.-|.+.|+.|+++..
T Consensus       178 p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~-----------~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs  246 (345)
T PLN02897        178 PLNVGNLAMRGREPLFVSCTPKGCVELLIRS-----------GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHA  246 (345)
T ss_pred             HHHHHHHhcCCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcC
Confidence                 22 1111      1145556655543           2678999999999877 999999999999999888874

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=91.79  E-value=0.22  Score=54.76  Aligned_cols=36  Identities=39%  Similarity=0.462  Sum_probs=32.9

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      -.+|+|+|||+|.+|.++++.|...|.+|+|++++.
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~  226 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE  226 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            357899999999999999999999999999999864

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=91.74  E-value=4.5  Score=38.10  Aligned_cols=120  Identities=22%  Similarity=0.220  Sum_probs=75.0

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCC-Cc-EEEEeccCCCCCCCCCCHHHHHH
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESP-VP-TLFTYRPIWEGGQYDGDENERVD  102 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~-~P-iI~T~R~~~eGG~~~~~~~~~~~  102 (420)
                      .|...|...+.+++..-++.+.+.|..++|+-++. +  ...+.++.++++.+ .| +++=.=|     .  .+.    +
T Consensus        14 ~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~-~--~a~~~i~~l~~~~~~~p~~~vGaGT-----V--~~~----~   79 (213)
T PRK06552         14 GVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTN-P--FASEVIKELVELYKDDPEVLIGAGT-----V--LDA----V   79 (213)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC-c--cHHHHHHHHHHHcCCCCCeEEeeee-----C--CCH----H
Confidence            35556889999999999999889999999999983 1  22345666665543 23 4432211     1  122    2


Q ss_pred             HHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          103 VLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       103 ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      -.+.+++.|++|+ |-=...+++.+..   +..+..+|--.|    ||  +|+    .++.+.|+|++|+
T Consensus        80 ~~~~a~~aGA~Fi-vsP~~~~~v~~~~---~~~~i~~iPG~~----T~--~E~----~~A~~~Gad~vkl  135 (213)
T PRK06552         80 TARLAILAGAQFI-VSPSFNRETAKIC---NLYQIPYLPGCM----TV--TEI----VTALEAGSEIVKL  135 (213)
T ss_pred             HHHHHHHcCCCEE-ECCCCCHHHHHHH---HHcCCCEECCcC----CH--HHH----HHHHHcCCCEEEE
Confidence            4567888899987 3333444444433   345666665544    44  343    3444689999998

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=91.74  E-value=0.23  Score=49.13  Aligned_cols=39  Identities=44%  Similarity=0.572  Sum_probs=34.9

Q ss_pred             CCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       381 ~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      |+=++|-|| .|.||+-+..|++.|.+|++++||.+|.+.
T Consensus        49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~   88 (312)
T KOG1014|consen   49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEA   88 (312)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            466888897 679999999999999999999999999764

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=91.72  E-value=0.29  Score=48.87  Aligned_cols=40  Identities=18%  Similarity=0.150  Sum_probs=35.9

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.||++.|+|-|.+|++++.-|..+|++|+.++|+.++
T Consensus       132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~  171 (312)
T PRK15469        132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKS  171 (312)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            3567899999999999999999999999999999997654

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=91.72  E-value=5.8  Score=38.10  Aligned_cols=120  Identities=18%  Similarity=0.260  Sum_probs=74.4

Q ss_pred             HHHHHhhCC-CcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCC
Q 014691           69 IKTLIKESP-VPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQ  147 (420)
Q Consensus        69 l~~l~~~~~-~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~  147 (420)
                      ++.+.+..+ .|+++-.-+    |... +.++-.+..++.++.|++.|-||-..  +....+...+..+.-|| -+-+. 
T Consensus        64 ~~~I~r~~~~~pviaD~~~----G~g~-~~~~~~~~~~~l~~aGa~gv~iED~~--~~~~~i~ai~~a~i~Vi-aRtd~-  134 (240)
T cd06556          64 VRAVRRGAPLALIVADLPF----GAYG-APTAAFELAKTFMRAGAAGVKIEGGE--WHIETLQMLTAAAVPVI-AHTGL-  134 (240)
T ss_pred             HHHHHhhCCCCCEEEeCCC----CCCc-CHHHHHHHHHHHHHcCCcEEEEcCcH--HHHHHHHHHHHcCCeEE-EEeCC-
Confidence            444555554 699988654    4443 54566677788888999999999863  23333332222345444 33232 


Q ss_pred             CCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEEecCC
Q 014691          148 YTP-----------------SVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGE  203 (420)
Q Consensus       148 ~tP-----------------~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~~MG~  203 (420)
                       +|                 +.+++.+......+.|||.+=+=..  +.++..+   +....++|++++++|.
T Consensus       135 -~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~--~~e~~~~---i~~~~~~P~~~~gag~  201 (240)
T cd06556         135 -TPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV--PVELAKQ---ITEALAIPLAGIGAGS  201 (240)
T ss_pred             -chhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHH---HHHhCCCCEEEEecCc
Confidence             22                 2345666666677899999877533  6666644   4444678999998886

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=91.67  E-value=0.3  Score=46.42  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+++++|||+|+|.+|..=+..|.+.|++|+|++-+.
T Consensus        21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i   58 (223)
T PRK05562         21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKF   58 (223)
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            45678999999999999888888999999999998653

>TIGR00292 thiazole biosynthesis enzyme

Probab=91.66  E-value=0.22  Score=48.13  Aligned_cols=34  Identities=26%  Similarity=0.491  Sum_probs=30.9

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      -.|+|||+|.+|.++++.|++.|.+|.|+.|+..
T Consensus        22 ~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~   55 (254)
T TIGR00292        22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA   55 (254)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            4699999999999999999999999999998753

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PLN02602 lactate dehydrogenase

Probab=91.58  E-value=0.28  Score=49.79  Aligned_cols=37  Identities=19%  Similarity=0.337  Sum_probs=33.4

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhhhh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYENLQ  418 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~--~i~v~nR~~~ka~  418 (420)
                      +++.|||+|.+|.+++|.|...|.  ++.+++++.++++
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~   76 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLR   76 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhh
Confidence            699999999999999999998886  8999999887664

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=91.56  E-value=0.25  Score=55.16  Aligned_cols=35  Identities=31%  Similarity=0.402  Sum_probs=32.6

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ..+++|+|||+|.+|.++++.|...|.+|+|+.+.
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~  463 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEAL  463 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            46889999999999999999999999999999874

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=91.56  E-value=1.3  Score=41.66  Aligned_cols=92  Identities=17%  Similarity=0.347  Sum_probs=60.5

Q ss_pred             CCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecC---------CCCC---Cc---hhHHHHHHhhCCCcEEEE
Q 014691           19 MRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDG---------LKNF---NP---RENIKTLIKESPVPTLFT   83 (420)
Q Consensus        19 ~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~---------l~~~---~~---~~~l~~l~~~~~~PiI~T   83 (420)
                      -..+.| +.+.|.+.+.+++.+.++.+.+.|+|.||+-+-+         +...   ++   .+.++.+++....|+.+-
T Consensus        51 ~~~~~p-~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk  129 (231)
T cd02801          51 NPEERP-LIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVK  129 (231)
T ss_pred             CccCCC-EEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            344445 4568999999999999988877899999997654         2110   11   123444444456777777


Q ss_pred             eccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 014691           84 YRPIWEGGQYDGDENERVDVLRLAMELGADYIDV  117 (420)
Q Consensus        84 ~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDi  117 (420)
                      +|..+     ... ++-.++.+.+.+.|+++|.|
T Consensus       130 ~r~~~-----~~~-~~~~~~~~~l~~~Gvd~i~v  157 (231)
T cd02801         130 IRLGW-----DDE-EETLELAKALEDAGASALTV  157 (231)
T ss_pred             Eeecc-----CCc-hHHHHHHHHHHHhCCCEEEE
Confidence            77422     111 35666777777889999877

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=91.54  E-value=3.4  Score=38.41  Aligned_cols=111  Identities=15%  Similarity=0.189  Sum_probs=64.5

Q ss_pred             CcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEe---cCCCCCC-chhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHH
Q 014691           23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRL---DGLKNFN-PRENIKTLIKESPVPTLFTYRPIWEGGQYDGDEN   98 (420)
Q Consensus        23 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRl---D~l~~~~-~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~   98 (420)
                      +..|.++|...|...+.++++.+.+.|+|+|++|+   .+.++.. ..+.++.+++..+.|+-+.+-..        +.+
T Consensus         3 ~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~--------d~~   74 (220)
T PRK05581          3 MVLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVE--------NPD   74 (220)
T ss_pred             CcEEEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeC--------CHH
Confidence            34688999999999999999999999999999986   2222211 13345555543344543333321        333


Q ss_pred             HHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcc
Q 014691           99 ERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSH  144 (420)
Q Consensus        99 ~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H  144 (420)
                      .+.   +.+.+.|+|+|=+=....+.....+...+..+.+++++.|
T Consensus        75 ~~i---~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~  117 (220)
T PRK05581         75 RYV---PDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLN  117 (220)
T ss_pred             HHH---HHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEEC
Confidence            444   3445778888544333222222222222345667777764

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=91.54  E-value=0.27  Score=51.80  Aligned_cols=36  Identities=42%  Similarity=0.437  Sum_probs=32.7

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+++++|||+|.+|.++++.|...|.+|+|+.+..
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~  174 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP  174 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            367899999999999999999999999999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=91.52  E-value=0.33  Score=48.50  Aligned_cols=39  Identities=31%  Similarity=0.403  Sum_probs=34.4

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++|+|+|+|++|.+++..+..+|+ +|++++|+++|.+
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~  208 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLS  208 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHH
Confidence            57899999999999999988889999 7999999877654

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=91.51  E-value=0.23  Score=51.97  Aligned_cols=39  Identities=33%  Similarity=0.457  Sum_probs=36.2

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      .+++||+|+|||+|-+|--++-.|.+.|.+|+++-|++.
T Consensus       171 ~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~  209 (443)
T COG2072         171 EDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP  209 (443)
T ss_pred             cccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence            578999999999999999999999999999999999864

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=91.50  E-value=4.2  Score=39.25  Aligned_cols=138  Identities=20%  Similarity=0.210  Sum_probs=81.3

Q ss_pred             cEEEEeecC--CC-----HHHHHHHHHhhhhcCCCEEEEEecCCCCCCchh---HHHHHH---hhCCCcEEEEeccCCCC
Q 014691           24 TLICVPIMG--ES-----VDKMVVDMGKANASGADLVEIRLDGLKNFNPRE---NIKTLI---KESPVPTLFTYRPIWEG   90 (420)
Q Consensus        24 ~~icv~l~~--~~-----~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~---~l~~l~---~~~~~PiI~T~R~~~eG   90 (420)
                      ..+|+++.+  +.     .+....++++++..|+|.|-+|...... ...+   .++.+.   ++.+.|+++-.=  ..|
T Consensus        71 ~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~~-~~~~~~~~~~~i~~~~~~~g~~liv~~~--~~G  147 (258)
T TIGR01949        71 VGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGSD-TEWEQIRDLGMIAEICDDWGVPLLAMMY--PRG  147 (258)
T ss_pred             CcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCCc-hHHHHHHHHHHHHHHHHHcCCCEEEEEe--ccC
Confidence            346777722  22     1235566788888999999999875432 1112   233333   345788876211  333


Q ss_pred             CCCC-CCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCC
Q 014691           91 GQYD-GDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGAD  168 (420)
Q Consensus        91 G~~~-~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaD  168 (420)
                      .... .+.+...+..+.+.+.|+|||=+.+....+.++++...  ...+|+++=-  -.+.+.++..+.++++.+.||+
T Consensus       148 vh~~~~~~~~~~~~~~~a~~~GADyikt~~~~~~~~l~~~~~~--~~iPVva~GG--i~~~~~~~~~~~i~~~~~aGa~  222 (258)
T TIGR01949       148 PHIDDRDPELVAHAARLGAELGADIVKTPYTGDIDSFRDVVKG--CPAPVVVAGG--PKTNSDREFLQMIKDAMEAGAA  222 (258)
T ss_pred             cccccccHHHHHHHHHHHHHHCCCEEeccCCCCHHHHHHHHHh--CCCcEEEecC--CCCCCHHHHHHHHHHHHHcCCc
Confidence            3221 23333334457778899999998865444556666532  3456665421  1122467788888888899998

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=91.43  E-value=0.4  Score=49.12  Aligned_cols=37  Identities=19%  Similarity=0.401  Sum_probs=34.6

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ..+.||++-|||.|.+|++++..|..+|++|..+|+.
T Consensus       112 ~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~  148 (378)
T PRK15438        112 FSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPP  148 (378)
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCc
Confidence            5789999999999999999999999999999999975

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=91.43  E-value=0.41  Score=46.31  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=30.4

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..|+|||+|.+|.++++.|++.|.+|.|+.|..
T Consensus        26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~   58 (257)
T PRK04176         26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL   58 (257)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence            469999999999999999999999999999864

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=91.33  E-value=3.5  Score=40.47  Aligned_cols=85  Identities=25%  Similarity=0.310  Sum_probs=52.5

Q ss_pred             CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccc------------cchhHHHhh-cCCC-CcEEEE
Q 014691           76 SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVA------------REFNDSIRG-KKPE-KCKVIV  141 (420)
Q Consensus        76 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~------------~~~~~~l~~-~~~~-~~kiI~  141 (420)
                      .+.|+++.++.     .   +.+++.+..+.+.+.|+|+|+|-+.++            .+...++.. .++. +..|.+
T Consensus        88 ~~~p~ivsi~g-----~---~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~v  159 (296)
T cd04740          88 FGTPVIASIAG-----S---TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIV  159 (296)
T ss_pred             CCCcEEEEEec-----C---CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEE
Confidence            46899999983     1   457788888888888999999955432            222223321 1111 233332


Q ss_pred             EcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 014691          142 SSHNYQYTPSVEDLSNLVARIQASGADIVKFA  173 (420)
Q Consensus       142 S~H~f~~tP~~~el~~~~~~~~~~gaDivKia  173 (420)
                      =.     +|+.+++.++.+.+.+.|+|.+.+.
T Consensus       160 Kl-----~~~~~~~~~~a~~~~~~G~d~i~~~  186 (296)
T cd04740         160 KL-----TPNVTDIVEIARAAEEAGADGLTLI  186 (296)
T ss_pred             Ee-----CCCchhHHHHHHHHHHcCCCEEEEE
Confidence            21     3555567777777777888877654

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=91.23  E-value=3.9  Score=37.65  Aligned_cols=79  Identities=19%  Similarity=0.259  Sum_probs=49.7

Q ss_pred             EeecCCCHHHHHHHHHhhhhcCCCEEEEE-ec--CCCCCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691           28 VPIMGESVDKMVVDMGKANASGADLVEIR-LD--GLKNFNP-RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDV  103 (420)
Q Consensus        28 v~l~~~~~~e~~~~~~~~~~~~~D~vElR-lD--~l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l  103 (420)
                      ++|...|.+.+.++++.+...|+|.||+- .|  +.+++.. .+.++.+++..+.|+.+.+...        +.+.   +
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~--------~~~~---~   71 (210)
T TIGR01163         3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVE--------NPDR---Y   71 (210)
T ss_pred             chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeC--------CHHH---H
Confidence            45777888888899988888899999995 33  2233222 3456666655567764444332        1222   3


Q ss_pred             HHHHHHhCCcEEEE
Q 014691          104 LRLAMELGADYIDV  117 (420)
Q Consensus       104 l~~~~~~~~d~iDi  117 (420)
                      ++.+.+.|+|.|=+
T Consensus        72 ~~~~~~~gadgv~v   85 (210)
T TIGR01163        72 IEDFAEAGADIITV   85 (210)
T ss_pred             HHHHHHcCCCEEEE
Confidence            55666778777444

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=91.22  E-value=3  Score=40.53  Aligned_cols=153  Identities=17%  Similarity=0.139  Sum_probs=81.0

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHh--hCCCcEEEEeccC-CCCCCCCCCHHHHHHHHHHHHH
Q 014691           33 ESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK--ESPVPTLFTYRPI-WEGGQYDGDENERVDVLRLAME  109 (420)
Q Consensus        33 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~--~~~~PiI~T~R~~-~eGG~~~~~~~~~~~ll~~~~~  109 (420)
                      .+.+++..-++++.+.++|.|=+---+         +....+  ..+.|+++++=+. .-| .. ...+....-.+.+++
T Consensus        36 ~~~~d~~~~~~~a~~~~~~av~v~~~~---------~~~~~~~~~~~~~l~~~i~~~~~~~-~~-~~~~~~~~~ve~A~~  104 (267)
T PRK07226         36 DGLVDIRDTVNKVAEGGADAVLMHKGL---------ARHGHRGYGRDVGLIVHLSASTSLS-PD-PNDKVLVGTVEEAIK  104 (267)
T ss_pred             cCcCCHHHHHHHHHhcCCCEEEeCHhH---------HhhhccccCCCCcEEEEEcCCCCCC-CC-CCcceeeecHHHHHH
Confidence            355666666666667677776543211         221111  2467777765421 111 10 111345556778999


Q ss_pred             hCCcEEEEEccccc----chh---HHHhh-cCCCCcEEEEE-ccc---CCCCCCHHHHHHHHHHHHHcCCCEEEEEeecC
Q 014691          110 LGADYIDVELQVAR----EFN---DSIRG-KKPEKCKVIVS-SHN---YQYTPSVEDLSNLVARIQASGADIVKFATTAL  177 (420)
Q Consensus       110 ~~~d~iDiEl~~~~----~~~---~~l~~-~~~~~~kiI~S-~H~---f~~tP~~~el~~~~~~~~~~gaDivKia~~~~  177 (420)
                      .|++.||+=+....    +..   .++.. .++.+..+|+- +-+   .+..-+.+++.+..+.+.+.|||++|.-... 
T Consensus       105 ~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~-  183 (267)
T PRK07226        105 LGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTG-  183 (267)
T ss_pred             cCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCC-
Confidence            99999998655321    222   22222 23456666663 211   1111233455665677778999999997431 


Q ss_pred             CHHHHHHHHHHhccCCCCEEEEe
Q 014691          178 DITDVARVFQITVHSQVPIIGLV  200 (420)
Q Consensus       178 s~~D~~~ll~~~~~~~~p~I~~~  200 (420)
                         |...+-+.....++|+.+.+
T Consensus       184 ---~~~~l~~~~~~~~ipV~a~G  203 (267)
T PRK07226        184 ---DPESFREVVEGCPVPVVIAG  203 (267)
T ss_pred             ---CHHHHHHHHHhCCCCEEEEe
Confidence               33333334444467876655

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=91.22  E-value=9.8  Score=35.84  Aligned_cols=145  Identities=18%  Similarity=0.161  Sum_probs=83.8

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (420)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~  111 (420)
                      ..|.+++.+-++++.+.+...|=+.--+.      +..++.++..++ -+.|+=.-..|..   +-+.+..-.+.+++.|
T Consensus        14 ~~t~~~i~~lc~~A~~~~~~avcv~p~~v------~~a~~~l~~~~v-~v~tVigFP~G~~---~~~~K~~E~~~Av~~G   83 (211)
T TIGR00126        14 DTTEEDIITLCAQAKTYKFAAVCVNPSYV------PLAKELLKGTEV-RICTVVGFPLGAS---TTDVKLYETKEAIKYG   83 (211)
T ss_pred             CCCHHHHHHHHHHHHhhCCcEEEeCHHHH------HHHHHHcCCCCC-eEEEEeCCCCCCC---cHHHHHHHHHHHHHcC
Confidence            34566777767776666554443311111      122333333343 3445544344432   3356666678899999


Q ss_pred             CcEEEEEcccc-------cchhHHH---hh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE--e--ec
Q 014691          112 ADYIDVELQVA-------REFNDSI---RG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA--T--TA  176 (420)
Q Consensus       112 ~d~iDiEl~~~-------~~~~~~l---~~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia--~--~~  176 (420)
                      +|-||+=++..       +...+++   .. .+.--.|+|+-...    .+.+++....+-+.+.|||++|--  .  ..
T Consensus        84 AdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~----L~~~ei~~a~~ia~eaGADfvKTsTGf~~~g  159 (211)
T TIGR00126        84 ADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGL----LTDEEIRKACEICIDAGADFVKTSTGFGAGG  159 (211)
T ss_pred             CCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCC----CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCC
Confidence            99999977653       1122233   22 22223577765432    244678888888889999999987  2  34


Q ss_pred             CCHHHHHHHHHHhc
Q 014691          177 LDITDVARVFQITV  190 (420)
Q Consensus       177 ~s~~D~~~ll~~~~  190 (420)
                      -+.+|+..+.+...
T Consensus       160 at~~dv~~m~~~v~  173 (211)
T TIGR00126       160 ATVEDVRLMRNTVG  173 (211)
T ss_pred             CCHHHHHHHHHHhc
Confidence            57788877777654

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members

Probab=91.15  E-value=14  Score=34.91  Aligned_cols=200  Identities=18%  Similarity=0.234  Sum_probs=115.2

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA  112 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~  112 (420)
                      +.++.++-++...+.|.|.||+=.-...+ ++.+.++.+.+.. +.++..-+|.         ..+.--..++.+...|+
T Consensus        12 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~g~   81 (237)
T PF00682_consen   12 STEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNARLQALCRA---------NEEDIERAVEAAKEAGI   81 (237)
T ss_dssp             -HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSEEEEEEES---------CHHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhcccccceeeee---------hHHHHHHHHHhhHhccC
Confidence            34455555555566799999998332221 2234566555432 3445445662         22222223566677899


Q ss_pred             cEEEEEccccc----------------chhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec
Q 014691          113 DYIDVELQVAR----------------EFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA  176 (420)
Q Consensus       113 d~iDiEl~~~~----------------~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~  176 (420)
                      +.+.+-...++                ...+.+...+..+.++-.+.=+...+ +.+++.+.++++.++|+|++-|+=+.
T Consensus        82 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~i~l~Dt~  160 (237)
T PF00682_consen   82 DIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRT-DPEELLELAEALAEAGADIIYLADTV  160 (237)
T ss_dssp             SEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGS-SHHHHHHHHHHHHHHT-SEEEEEETT
T ss_pred             CEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccc-cHHHHHHHHHHHHHcCCeEEEeeCcc
Confidence            99999776654                11111222345677886666544333 46789999999999999999998554


Q ss_pred             --CCHHHHHHHHHHhccC--CCCEEEEecCCc--chhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691          177 --LDITDVARVFQITVHS--QVPIIGLVMGER--GLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (420)
Q Consensus       177 --~s~~D~~~ll~~~~~~--~~p~I~~~MG~~--G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~  245 (420)
                        -+|.++..+++.+.+.  +.|+-..+=-..  +...=+..-..|..+.=+++..- .-.+|+.+++++...++
T Consensus       161 G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~Gl-G~~~Gn~~le~lv~~L~  234 (237)
T PF00682_consen  161 GIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGL-GERAGNAPLEELVAALE  234 (237)
T ss_dssp             S-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGG-SSTTSB-BHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccC-CCCCCCccHHHHHHHHh
Confidence              4689998888876542  355544332233  33333444444544433344321 24599999998876664

are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....

>PRK14851 hypothetical protein; Provisional

Probab=91.11  E-value=0.25  Score=54.43  Aligned_cols=35  Identities=29%  Similarity=0.333  Sum_probs=32.2

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      +++++|+|+|+||.|..++..|+..|+ +++|++-+
T Consensus        41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D   76 (679)
T PRK14851         41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD   76 (679)
T ss_pred             HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence            567899999999999999999999999 99999864

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=91.08  E-value=8.1  Score=38.68  Aligned_cols=150  Identities=15%  Similarity=0.221  Sum_probs=88.8

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCC----C------C--Cc---hhHHHHHHhhCCCcEEEEeccCCCC
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLK----N------F--NP---RENIKTLIKESPVPTLFTYRPIWEG   90 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~----~------~--~~---~~~l~~l~~~~~~PiI~T~R~~~eG   90 (420)
                      +.+-|.+.+.+++.+-++.+...|+|.||+=+-+=.    .      +  ++   .+.++.+++..+.|+.+-+|.    
T Consensus        67 ~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~----  142 (321)
T PRK10415         67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRT----  142 (321)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEc----
Confidence            457899999999988777766789999999887521    0      0  11   122334444457898888883    


Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 014691           91 GQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIV  170 (420)
Q Consensus        91 G~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDiv  170 (420)
                      | |..+.++..++.+.+.+.|+++|.|.-....           +         .+.++++++.+. .+.+.    .++.
T Consensus       143 G-~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~-----------~---------~~~G~a~~~~i~-~ik~~----~~iP  196 (321)
T PRK10415        143 G-WAPEHRNCVEIAQLAEDCGIQALTIHGRTRA-----------C---------LFNGEAEYDSIR-AVKQK----VSIP  196 (321)
T ss_pred             c-ccCCcchHHHHHHHHHHhCCCEEEEecCccc-----------c---------ccCCCcChHHHH-HHHHh----cCCc
Confidence            3 3333345667888888889999987532100           0         012334443222 22221    1333


Q ss_pred             EEE-eecCCHHHHHHHHHHhccCCCCEEEEecCCcchhh
Q 014691          171 KFA-TTALDITDVARVFQITVHSQVPIIGLVMGERGLIS  208 (420)
Q Consensus       171 Kia-~~~~s~~D~~~ll~~~~~~~~p~I~~~MG~~G~~S  208 (420)
                      =++ .-..|.+|..++++.   .+...+.++.|-.+.+.
T Consensus       197 VI~nGgI~s~~da~~~l~~---~gadgVmiGR~~l~nP~  232 (321)
T PRK10415        197 VIANGDITDPLKARAVLDY---TGADALMIGRAAQGRPW  232 (321)
T ss_pred             EEEeCCCCCHHHHHHHHhc---cCCCEEEEChHhhcCCh
Confidence            222 222577888766644   45567788877766553

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=91.08  E-value=0.27  Score=47.51  Aligned_cols=36  Identities=22%  Similarity=0.255  Sum_probs=32.5

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      .+...+|+|+|+||.|..++..|+..|+ +|+|++-+
T Consensus        23 KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD   59 (287)
T PTZ00245         23 QLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEG   59 (287)
T ss_pred             HHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCC
Confidence            3566799999999999999999999999 99999865

>PRK06046 alanine dehydrogenase; Validated

Probab=91.07  E-value=0.28  Score=49.23  Aligned_cols=39  Identities=21%  Similarity=0.304  Sum_probs=33.7

Q ss_pred             CCEEEEEccchHHHHHHHHHHh-CCC-eEEEEeCChhhhhc
Q 014691          381 GKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYENLQR  419 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~-~g~-~i~v~nR~~~ka~~  419 (420)
                      -+++.|||+|+.|++.+.++.. .++ +|+|+||+.+++++
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~  169 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEK  169 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHH
Confidence            4689999999999999998874 467 89999999988765

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=91.04  E-value=0.88  Score=50.61  Aligned_cols=100  Identities=20%  Similarity=0.241  Sum_probs=63.4

Q ss_pred             ccHHHHHHHhc--CCCCCEEEE---cccchHHHHhhhhcccHHHHHhcceeEEEEeccCCeEEEEecC-HHHHHHHHHhh
Q 014691          291 DDIAKFFQTYS--SNDFAGFSC---TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTD-YVGAISAIEDG  364 (420)
Q Consensus       291 ~~l~~~~~~~~--~~~~~G~~V---T~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g~l~G~NTD-~~G~~~~l~~~  364 (420)
                      +|.++|++..+  .+.|.|+|.   ..|+=..+   ++++.+      ..|.-++.  |. .+|.-.= -.|++++++-.
T Consensus       112 ~d~de~v~~v~~~~p~~g~i~~ED~~~p~~f~i---~~~~~~------~~~ip~f~--DD-~~GTa~v~lA~l~na~~~~  179 (752)
T PRK07232        112 EDPDKFIEAVAALEPTFGGINLEDIKAPECFYI---EEKLRE------RMDIPVFH--DD-QHGTAIISAAALLNALELV  179 (752)
T ss_pred             CCHHHHHHHHHHhCCCccEEeeeecCCchHHHH---HHHHHH------hcCCCeec--cc-cchHHHHHHHHHHHHHHHh
Confidence            46777777663  578999885   33433333   333222      22333343  32 3443322 34556666532


Q ss_pred             hccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC---eEEEEeCC
Q 014691          365 LRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA---RVVIANRT  413 (420)
Q Consensus       365 ~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~---~i~v~nR~  413 (420)
                                 +..++..++++.|||.+|-+++.-|...|+   +|+++++.
T Consensus       180 -----------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~  220 (752)
T PRK07232        180 -----------GKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSK  220 (752)
T ss_pred             -----------CCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCC
Confidence                       246778899999999999999999999998   79999863

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=91.02  E-value=10  Score=36.16  Aligned_cols=89  Identities=19%  Similarity=0.150  Sum_probs=61.4

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCC-----------CCchhHHHHHH---hhCCCcEEEEeccCCCC
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN-----------FNPRENIKTLI---KESPVPTLFTYRPIWEG   90 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~-----------~~~~~~l~~l~---~~~~~PiI~T~R~~~eG   90 (420)
                      .+.+.+.+.|++++..-++.. ..++|.||+=.-+=..           ..+.+.+..+.   +..++|+.+-+|...  
T Consensus        69 ~vivnv~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~--  145 (231)
T TIGR00736        69 LVSVNVRFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC--  145 (231)
T ss_pred             CEEEEEecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC--
Confidence            466899999999999877775 5589999998776210           01112333333   245789999999632  


Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCcEEEEEccc
Q 014691           91 GQYDGDENERVDVLRLAMELGADYIDVELQV  121 (420)
Q Consensus        91 G~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~  121 (420)
                           ++....++.+.+.+.|+++|-|+-..
T Consensus       146 -----~~~~~~~~a~~l~~aGad~i~Vd~~~  171 (231)
T TIGR00736       146 -----IPLDELIDALNLVDDGFDGIHVDAMY  171 (231)
T ss_pred             -----CcchHHHHHHHHHHcCCCEEEEeeCC
Confidence                 23456678888889999999887433

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed

Probab=90.98  E-value=4.4  Score=40.93  Aligned_cols=300  Identities=19%  Similarity=0.267  Sum_probs=156.8

Q ss_pred             ccccCCCCCCcEEEEeec---CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCC
Q 014691           14 LVSGGMRKNPTLICVPIM---GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEG   90 (420)
Q Consensus        14 ~~~~~~~~~~~~icv~l~---~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eG   90 (420)
                      +|+-.+.-+.|...=+.+   -.|.+..++|+++..+.|||+|=+-+.-..   ..+.+..+.+.+++|++.-+-     
T Consensus        17 VG~v~iGg~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~---~a~al~~I~~~~~iPlvADIH-----   88 (360)
T PRK00366         17 VGNVPIGGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVPDME---AAAALPEIKKQLPVPLVADIH-----   88 (360)
T ss_pred             EcCEeECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccCCHH---HHHhHHHHHHcCCCCEEEecC-----
Confidence            333334444444333333   345777888999988999999876655332   345677888888999997653     


Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCcEEEEEcccc---cchhHHHh-hcCCCCcEE-EEEccc---------CC-CCCC--HH
Q 014691           91 GQYDGDENERVDVLRLAMELGADYIDVELQVA---REFNDSIR-GKKPEKCKV-IVSSHN---------YQ-YTPS--VE  153 (420)
Q Consensus        91 G~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~---~~~~~~l~-~~~~~~~ki-I~S~H~---------f~-~tP~--~~  153 (420)
                        |+      +++...+++.|+|-|=|-=...   ++.++.+. .++..++.| |.-.|=         +. .||.  .+
T Consensus        89 --Fd------~~lAl~a~~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamve  160 (360)
T PRK00366         89 --FD------YRLALAAAEAGADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVE  160 (360)
T ss_pred             --CC------HHHHHHHHHhCCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHH
Confidence              21      2344567777888776542221   22333443 233444444 433321         11 2441  13


Q ss_pred             HHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhcc-CCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCC
Q 014691          154 DLSNLVARIQASGADIVKFATTALDITDVARVFQITVH-SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAP  232 (420)
Q Consensus       154 el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~-~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAP  232 (420)
                      ...+..+-+.++|-+=+|+-..+.+..+..+..+++.+ .+.|+ .++.-+.|..            .-+.+.    ||-
T Consensus       161 SAl~~~~~le~~~f~~iviS~KsS~v~~~i~ayrlla~~~dyPL-HlGvTEAG~~------------~~G~iK----Sa~  223 (360)
T PRK00366        161 SALRHAKILEELGFDDIKISVKASDVQDLIAAYRLLAKRCDYPL-HLGVTEAGMG------------FKGTVK----SAA  223 (360)
T ss_pred             HHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhcCCCCc-eecccCCCCC------------CCceeh----hHH
Confidence            34555667778888888999999988888777776654 35553 3333333211            001110    110


Q ss_pred             CCCCHHhHHHHHhccccCCCceEEeeeccCccccccHHHHHHHHHHcCCCce---eeccc-c----ccHHHHHHHhcCCC
Q 014691          233 GQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGV---FVHLL-V----DDIAKFFQTYSSND  304 (420)
Q Consensus       233 GQ~~~~~l~~~~~~~~~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~---y~~~~-~----~~l~~~~~~~~~~~  304 (420)
                            -+-.++ ..++ ++|-++-+-++|+..-+   .=...++.+||...   ....+ |    .|+......+. ..
T Consensus       224 ------gig~LL-~~GI-GDTiRVSLt~~P~~EV~---va~~IL~slglr~~g~~IisCPgCgR~~~D~~~la~~ve-e~  291 (360)
T PRK00366        224 ------GLGALL-QEGI-GDTIRVSLTADPVEEVK---VGQEILQSLGLRSRGPEVISCPTCGRTEFDVIQELAEVE-QR  291 (360)
T ss_pred             ------HHHHHH-HhcC-CCeEEEeCCCCCHHHHH---HHHHHHHHcCCccCCCeEEECCCCCCCcccHHHHHHHHH-HH
Confidence                  111111 1233 46777777777755432   23456778887532   22221 1    13333333331 12


Q ss_pred             CCEEEEcccchHHHHhhh-hccc-HHHHHhcce----eEEEEeccCCeEEEEecCHHHHHHHHHh
Q 014691          305 FAGFSCTIPHKEAAVKCC-DEVD-TVAKSIGAV----NCIIRRQSDGKLFGYNTDYVGAISAIED  363 (420)
Q Consensus       305 ~~G~~VT~P~K~~i~~~~-d~l~-~~A~~iGAv----NTi~~~~~~g~l~G~NTD~~G~~~~l~~  363 (420)
                      |.|  +.+|+|..|+.+. .--. ..-+.+|-+    .-+++.  +|+.+.- ....-++..|.+
T Consensus       292 ~~~--~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~--~Gk~v~k-v~~~~~~~~l~~  351 (360)
T PRK00366        292 LEH--IKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFV--DGEKIKT-LPEENIVEELEA  351 (360)
T ss_pred             hcC--CCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEE--CCEEeee-eChHhHHHHHHH
Confidence            344  3678999998884 3322 222334322    233344  6766553 444444444433

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=90.92  E-value=0.28  Score=46.48  Aligned_cols=33  Identities=30%  Similarity=0.479  Sum_probs=30.3

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..|+|+|||.+|..++|.|++.|.+|.|+.|+.
T Consensus        31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l   63 (262)
T COG1635          31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL   63 (262)
T ss_pred             ccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence            358999999999999999999999999999864

>PRK07574 formate dehydrogenase; Provisional

Probab=90.89  E-value=0.35  Score=49.74  Aligned_cols=38  Identities=24%  Similarity=0.296  Sum_probs=35.2

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+.||++.|||.|.+|++++..|..+|++|+.+||+.
T Consensus       188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~  225 (385)
T PRK07574        188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHR  225 (385)
T ss_pred             eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC
Confidence            45789999999999999999999999999999999975

>PRK06436 glycerate dehydrogenase; Provisional

Probab=90.86  E-value=0.38  Score=47.85  Aligned_cols=38  Identities=34%  Similarity=0.496  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+.||++.|||-|.+|++++.-|..+|++|+.+||+.
T Consensus       118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~  155 (303)
T PRK06436        118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSY  155 (303)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            35789999999999999999998888999999999974

>PLN02686 cinnamoyl-CoA reductase

Probab=90.85  E-value=0.39  Score=48.80  Aligned_cols=41  Identities=27%  Similarity=0.225  Sum_probs=35.1

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      .+.++|++||.|+ |+.|++++..|.+.|++|+++.|+.++.
T Consensus        49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~   90 (367)
T PLN02686         49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDK   90 (367)
T ss_pred             cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            4567899999997 7899999999999999998888876543

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=90.79  E-value=3.4  Score=40.22  Aligned_cols=103  Identities=17%  Similarity=0.261  Sum_probs=69.7

Q ss_pred             EeccCCCCCC---CCCCHHHHHHHHHHHHHhCCcEEEEEcccc-------------cchhHHHhhcCCCCcEEEEEcccC
Q 014691           83 TYRPIWEGGQ---YDGDENERVDVLRLAMELGADYIDVELQVA-------------REFNDSIRGKKPEKCKVIVSSHNY  146 (420)
Q Consensus        83 T~R~~~eGG~---~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~-------------~~~~~~l~~~~~~~~kiI~S~H~f  146 (420)
                      |+|   ||++   +..+.+++.++.+..-+.|+++|++=.-..             .+.++.+......++++.+-.+..
T Consensus         5 TLR---DG~q~~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   81 (266)
T cd07944           5 TLR---DGGYVNNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG   81 (266)
T ss_pred             Ccc---cCccccCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence            677   5664   456778999999999999999988853221             344555553322356766544322


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCC
Q 014691          147 QYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV  194 (420)
Q Consensus       147 ~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~  194 (420)
                      ..      ..+.++.+.+.|.|++++++..++.+.+....+..+....
T Consensus        82 ~~------~~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~  123 (266)
T cd07944          82 ND------DIDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGY  123 (266)
T ss_pred             CC------CHHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCC
Confidence            11      1334666677899999999999888888888777665544

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>PRK04148 hypothetical protein; Provisional

Probab=90.78  E-value=0.39  Score=41.96  Aligned_cols=38  Identities=21%  Similarity=0.236  Sum_probs=33.5

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      +++++++||.| .|.+++..|.++|++|+.++.+++..+
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~   53 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVE   53 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            46789999999 888889999999999999999987654

>cd08230 glucose_DH Glucose dehydrogenase

Probab=90.75  E-value=0.42  Score=47.90  Aligned_cols=33  Identities=30%  Similarity=0.385  Sum_probs=30.5

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeC
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR  412 (420)
                      .|++|+|+|+|++|..++..+...|++|++++|
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~  204 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR  204 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence            578999999999999999988899999999998

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=90.68  E-value=19  Score=36.27  Aligned_cols=199  Identities=15%  Similarity=0.167  Sum_probs=110.9

Q ss_pred             HHHHHHHHHhhhhcCCCEEEEE---------ec-CCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691           35 VDKMVVDMGKANASGADLVEIR---------LD-GLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDV  103 (420)
Q Consensus        35 ~~e~~~~~~~~~~~~~D~vElR---------lD-~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~l  103 (420)
                      .++.+.-++.+.+.|+|.||+=         .+ -+....+.+.++.++... +.++.+-++.    |..  .    .+-
T Consensus        24 ~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~p----g~~--~----~~d   93 (337)
T PRK08195         24 LEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLP----GIG--T----VDD   93 (337)
T ss_pred             HHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEecc----Ccc--c----HHH
Confidence            3444444445556799999992         22 122223345566665433 3344433442    111  1    234


Q ss_pred             HHHHHHhCCcEEEEEccccc-chhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CCH
Q 014691          104 LRLAMELGADYIDVELQVAR-EFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA--LDI  179 (420)
Q Consensus       104 l~~~~~~~~d~iDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~--~s~  179 (420)
                      ++.+.+.|++.|-|-....+ +...+.. ..+..+.++.++.-+. ...+.+++.+..+++.++|||.+-++=+.  -++
T Consensus        94 l~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a-~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P  172 (337)
T PRK08195         94 LKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMS-HMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLP  172 (337)
T ss_pred             HHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEec-cCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCH
Confidence            67888999999887654433 2222222 2344566776654432 23356889999999999999998887554  468


Q ss_pred             HHHHHHHHHhccC---CCCEEEEecCCcc--hhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691          180 TDVARVFQITVHS---QVPIIGLVMGERG--LISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (420)
Q Consensus       180 ~D~~~ll~~~~~~---~~p~I~~~MG~~G--~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~  245 (420)
                      +|+.++++.+.+.   ++|+-..+=-.+|  ...=+..-.-|..+.=+++.. -....|.++++++...++
T Consensus       173 ~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G-lG~~aGN~~tE~lv~~L~  242 (337)
T PRK08195        173 EDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDGSLAG-LGAGAGNTPLEVLVAVLD  242 (337)
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEecChh-hcccccCccHHHHHHHHH
Confidence            9999988876542   4554433222222  222222223344333344432 124678888877665544

>PLN02477 glutamate dehydrogenase

Probab=90.66  E-value=0.65  Score=48.12  Aligned_cols=53  Identities=30%  Similarity=0.397  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEE-EEeCC
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANRT  413 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~-v~nR~  413 (420)
                      ++|...+++..+..       .+.+++|++++|.|.|.+|+.++..|.+.|++|+ |.+.+
T Consensus       186 g~Gv~~~~~~~~~~-------~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~  239 (410)
T PLN02477        186 GRGVVFATEALLAE-------HGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT  239 (410)
T ss_pred             hHHHHHHHHHHHHH-------cCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence            77888877776542       1357899999999999999999999999999766 77765

>PRK08605 D-lactate dehydrogenase; Validated

Probab=90.61  E-value=0.38  Score=48.44  Aligned_cols=40  Identities=28%  Similarity=0.255  Sum_probs=34.4

Q ss_pred             cccCCCEEEEEccchHHHHHHHHH-HhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGA-KAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL-~~~g~~i~v~nR~~~k  416 (420)
                      ..+.|+++.|||.|.+|++++..| ..+|++|+.++|+..+
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~  182 (332)
T PRK08605        142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNA  182 (332)
T ss_pred             ceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccH
Confidence            467899999999999999999998 5578899999987643

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=90.58  E-value=0.31  Score=51.09  Aligned_cols=34  Identities=26%  Similarity=0.349  Sum_probs=31.0

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      ..|+|||+|.+|.+++..|++.|.+|.|+.|...
T Consensus        40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            4699999999999999999999999999998643

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=90.55  E-value=0.32  Score=56.07  Aligned_cols=35  Identities=23%  Similarity=0.168  Sum_probs=32.4

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ++++|+|||+|.+|.++++.|+..|.+|+|+.+..
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~  463 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH  463 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence            57899999999999999999999999999998753

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=90.48  E-value=5.4  Score=38.76  Aligned_cols=126  Identities=19%  Similarity=0.188  Sum_probs=74.0

Q ss_pred             HHHHHHHHhhhhcCCCEEEEEecCCCCCCc--hhHHHHHH---hhCCCcEEEEeccCCCCCCCC--CCHHHHHHHHHHHH
Q 014691           36 DKMVVDMGKANASGADLVEIRLDGLKNFNP--RENIKTLI---KESPVPTLFTYRPIWEGGQYD--GDENERVDVLRLAM  108 (420)
Q Consensus        36 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~--~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~--~~~~~~~~ll~~~~  108 (420)
                      +....++++++..|+|.+-+|+..-.....  .+.+.++.   +...+|+++-..  .+|....  .+++......+.+.
T Consensus        93 ~~~~~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~--~~g~~~e~~~~~~~i~~a~~~a~  170 (267)
T PRK07226         93 KVLVGTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMY--PRGPGIKNEYDPEVVAHAARVAA  170 (267)
T ss_pred             ceeeecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEe--cCCCccCCCccHHHHHHHHHHHH
Confidence            455666778888999999999876432111  12333343   335789887432  2222211  13445555567888


Q ss_pred             HhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCC-CHHHHHHHHHHHHHcCCC
Q 014691          109 ELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTP-SVEDLSNLVARIQASGAD  168 (420)
Q Consensus       109 ~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP-~~~el~~~~~~~~~~gaD  168 (420)
                      +.|+|||-..+.-+.+.++++...  ..++|++|=   --+. +.++..+.+.+..+.||+
T Consensus       171 e~GAD~vKt~~~~~~~~l~~~~~~--~~ipV~a~G---Gi~~~~~~~~l~~v~~~~~aGA~  226 (267)
T PRK07226        171 ELGADIVKTNYTGDPESFREVVEG--CPVPVVIAG---GPKTDTDREFLEMVRDAMEAGAA  226 (267)
T ss_pred             HHCCCEEeeCCCCCHHHHHHHHHh--CCCCEEEEe---CCCCCCHHHHHHHHHHHHHcCCc
Confidence            999999987754333455555432  234555541   1111 346777777777788887

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=90.44  E-value=0.73  Score=48.20  Aligned_cols=54  Identities=22%  Similarity=0.304  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEE-EEeCC
Q 014691          353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANRT  413 (420)
Q Consensus       353 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~-v~nR~  413 (420)
                      .++|.+..+++.+...       +.+++||+|+|-|.|.+|..++..|.++|++|+ |.+.+
T Consensus       216 TG~Gv~~~~~~~l~~~-------~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~  270 (454)
T PTZ00079        216 TGYGLVYFVLEVLKKL-------NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD  270 (454)
T ss_pred             cHHHHHHHHHHHHHHc-------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            4788888887776532       357899999999999999999999999999655 77765

>PLN03139 formate dehydrogenase; Provisional

Probab=90.42  E-value=0.42  Score=49.15  Aligned_cols=38  Identities=26%  Similarity=0.335  Sum_probs=35.2

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+.||++.|||.|.+|++++..|..+|++|..++|+.
T Consensus       195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~  232 (386)
T PLN03139        195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLK  232 (386)
T ss_pred             cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCC
Confidence            46889999999999999999999999999999999874

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=90.37  E-value=31  Score=37.68  Aligned_cols=209  Identities=16%  Similarity=0.158  Sum_probs=127.6

Q ss_pred             HHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHH
Q 014691           36 DKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRLA  107 (420)
Q Consensus        36 ~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~  107 (420)
                      ++++.-+...-..|...+|.=    +|-   +...+|.+.|+.+++.. +.|+-.=+|..+==|..+.+++-....++.+
T Consensus        26 ~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a  105 (596)
T PRK14042         26 EDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLA  105 (596)
T ss_pred             HHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHH
Confidence            344444444445688888863    442   12235667787777654 5677666786666666666777777789999


Q ss_pred             HHhCCcEEEEE--cccccchhHHHhhcCCCCcEEEEEcccCCCCC--CHHHHHHHHHHHHHcCCCEEEEEeec--CCHHH
Q 014691          108 MELGADYIDVE--LQVAREFNDSIRGKKPEKCKVIVSSHNYQYTP--SVEDLSNLVARIQASGADIVKFATTA--LDITD  181 (420)
Q Consensus       108 ~~~~~d~iDiE--l~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP--~~~el~~~~~~~~~~gaDivKia~~~--~s~~D  181 (420)
                      .+.|.|.+=|=  ++..+.....+...++.|..+..+.- |...|  +.+.+.+..+++.+.|||.+=|+=|+  -++.+
T Consensus       106 ~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~-yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~  184 (596)
T PRK14042        106 VNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAIC-YTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTV  184 (596)
T ss_pred             HHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEE-ecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHH
Confidence            99998877662  22222222222222334445544411 11233  55778999999999999999888776  47899


Q ss_pred             HHHHHHHhccC-CCCEEEE--ecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691          182 VARVFQITVHS-QVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (420)
Q Consensus       182 ~~~ll~~~~~~-~~p~I~~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~  246 (420)
                      +.++.+.++.. +.|+-..  +.--+|..+=+..-.-|....=+++.. -.--+||++.+++...++.
T Consensus       185 v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~g-lGg~tGn~~tE~lv~~L~~  251 (596)
T PRK14042        185 TVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISS-FSGGASHPPTEALVAALTD  251 (596)
T ss_pred             HHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEecccc-ccCCCCcHhHHHHHHHHHh
Confidence            98888876543 5665543  444444455455555565444444443 1245799999888777664

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=90.37  E-value=0.49  Score=45.89  Aligned_cols=39  Identities=38%  Similarity=0.504  Sum_probs=33.6

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++|+|+|+|++|.+++..+..+|+ +|++++++.+|.+
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~  159 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRE  159 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            57899999999999999998889999 5888888877643

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK13984 putative oxidoreductase; Provisional

Probab=90.36  E-value=0.38  Score=52.26  Aligned_cols=36  Identities=25%  Similarity=0.317  Sum_probs=32.7

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      -++++++|||+|.+|.++++.|.++|.+|+|+.+..
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~  316 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLS  316 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            357899999999999999999999999999998764

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=90.34  E-value=18  Score=35.09  Aligned_cols=200  Identities=18%  Similarity=0.139  Sum_probs=117.0

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCC--------CCchhHHHHHHhhC--CCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLKN--------FNPRENIKTLIKES--PVPTLFTYRPIWEGGQYDGDENERVDV  103 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~--------~~~~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~~~~~l  103 (420)
                      +.++.++-++.+.+.|+|.||+=.=.-.+        +.+.+.++.+++..  +.++..-+|...      .+    .+.
T Consensus        18 ~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~----~~~   87 (266)
T cd07944          18 GDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGN------DD----IDL   87 (266)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCC------CC----HHH
Confidence            34444444444556799999986311110        11234566665432  567777777533      11    235


Q ss_pred             HHHHHHhCCcEEEEEcccc--cchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CCH
Q 014691          104 LRLAMELGADYIDVELQVA--REFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA--LDI  179 (420)
Q Consensus       104 l~~~~~~~~d~iDiEl~~~--~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~--~s~  179 (420)
                      ++.+.+.|+++|-+-....  +...+.+...+..+.+|.++.-+...+ +.+.+.+.++++.+.|+|.+-++=+.  -++
T Consensus        88 l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~-~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P  166 (266)
T cd07944          88 LEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGY-SDEELLELLELVNEIKPDVFYIVDSFGSMYP  166 (266)
T ss_pred             HHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCC-CHHHHHHHHHHHHhCCCCEEEEecCCCCCCH
Confidence            6677788899877764332  222222223345577887776653333 46789999999999999999888554  578


Q ss_pred             HHHHHHHHHhccC-C--CCEEEEecCCcchh--hhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691          180 TDVARVFQITVHS-Q--VPIIGLVMGERGLI--SRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (420)
Q Consensus       180 ~D~~~ll~~~~~~-~--~p~I~~~MG~~G~~--SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~  245 (420)
                      +++.++++.+... +  .|+=..+=-..|..  .=+..-..|..+.-+++..- .-..|.++.+++...++
T Consensus       167 ~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~-G~~aGN~~~E~~v~~l~  236 (266)
T cd07944         167 EDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGM-GRGAGNLPTELLLDYLN  236 (266)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccC-CCCcCcHHHHHHHHHHH
Confidence            9999998876543 3  66654443333322  22222233443333444331 23578999888776654

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>PRK12862 malic enzyme; Reviewed

Probab=90.32  E-value=1.3  Score=49.58  Aligned_cols=98  Identities=15%  Similarity=0.129  Sum_probs=61.7

Q ss_pred             cHHHHHHHh--cCCCCCEEEE---cccchHHHHhhhhcccHHHHHhcceeEEEEeccCCeEEEEecC-HHHHHHHHHhhh
Q 014691          292 DIAKFFQTY--SSNDFAGFSC---TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTD-YVGAISAIEDGL  365 (420)
Q Consensus       292 ~l~~~~~~~--~~~~~~G~~V---T~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g~l~G~NTD-~~G~~~~l~~~~  365 (420)
                      |.++|++.+  ..+.|.|+|.   ..|+=..+   ++++.+      ..|.-++.  |. .+|.-.= -.|++++++-. 
T Consensus       121 d~d~~v~~v~~~~p~f~~i~~ED~~~~~~f~i---~~~~~~------~~~ip~f~--DD-~~GTa~v~la~l~~a~~~~-  187 (763)
T PRK12862        121 DPDKLVEIVAALEPTFGGINLEDIKAPECFYI---ERELRE------RMKIPVFH--DD-QHGTAIIVAAALLNGLKLV-  187 (763)
T ss_pred             CHHHHHHHHHHhCCCcceeeeecccCchHHHH---HHHHHh------cCCCceEe--cC-cccHHHHHHHHHHHHHHHh-
Confidence            445555554  2588999875   34443333   333221      23333343  32 3454322 45566666532 


Q ss_pred             ccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC---eEEEEeC
Q 014691          366 RGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA---RVVIANR  412 (420)
Q Consensus       366 ~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~---~i~v~nR  412 (420)
                                +.+++..++++.|||.+|-+++.-|...|+   +|++++|
T Consensus       188 ----------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~  227 (763)
T PRK12862        188 ----------GKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDI  227 (763)
T ss_pred             ----------CCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcC
Confidence                      246778899999999999999999999998   6999995

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=90.31  E-value=0.44  Score=46.99  Aligned_cols=39  Identities=21%  Similarity=0.182  Sum_probs=32.4

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      ++++++|+|+|++|..++..++..|+ .|.+++++.+|.+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~  183 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRD  183 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH
Confidence            46789999999999999988888999 5777888776643

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=90.15  E-value=0.35  Score=53.18  Aligned_cols=33  Identities=30%  Similarity=0.378  Sum_probs=30.8

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..|+|||+|-+|.++||+|++.|.+|+|++|..
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            579999999999999999999999999999863

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=90.10  E-value=0.66  Score=48.18  Aligned_cols=40  Identities=25%  Similarity=0.292  Sum_probs=36.2

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ...++++|+|.|..|+.++..|.+.|.+++++++++++.+
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~  268 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAE  268 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence            4568999999999999999999999999999999988754

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=90.10  E-value=2.7  Score=41.94  Aligned_cols=91  Identities=22%  Similarity=0.410  Sum_probs=60.7

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCC--------CCC----Cc---hhHHHHHHhhCCCcEEEEecc
Q 014691           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGL--------KNF----NP---RENIKTLIKESPVPTLFTYRP   86 (420)
Q Consensus        22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l--------~~~----~~---~~~l~~l~~~~~~PiI~T~R~   86 (420)
                      ..| +.+-|.+.+.+++.+-++.+.+.|+|.||+=.-+=        ...    ++   .+.++.+++..++|+.+-+|.
T Consensus        62 ~~p-~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~  140 (319)
T TIGR00737        62 ETP-ISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRI  140 (319)
T ss_pred             cce-EEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEc
Confidence            344 55899999999999999888888999999965531        110    11   122344444567898888884


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEE
Q 014691           87 IWEGGQYDGDENERVDVLRLAMELGADYIDVE  118 (420)
Q Consensus        87 ~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE  118 (420)
                          | +..++.+-.++.+.+.+.|+++|.|-
T Consensus       141 ----g-~~~~~~~~~~~a~~l~~~G~d~i~vh  167 (319)
T TIGR00737       141 ----G-WDDAHINAVEAARIAEDAGAQAVTLH  167 (319)
T ss_pred             ----c-cCCCcchHHHHHHHHHHhCCCEEEEE
Confidence                2 22122234567777778899999883

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=90.08  E-value=0.78  Score=47.40  Aligned_cols=55  Identities=29%  Similarity=0.367  Sum_probs=42.8

Q ss_pred             ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEcc-----------------chHHHHHHHHHHhCCCeEEEEeCC
Q 014691          351 NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-----------------GGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       351 NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGa-----------------GGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      --|..=++..+++.+..         .+++||++||-|+                 |++|++++.+|...|++|++++|+
T Consensus       167 ~~~~~~I~~~~~~~~~~---------~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~  237 (399)
T PRK05579        167 MAEPEEIVAAAERALSP---------KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGP  237 (399)
T ss_pred             CCCHHHHHHHHHHHhhh---------cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCC
Confidence            45556666666655531         3578999999987                 569999999999999999999886


Q ss_pred             h
Q 014691          414 Y  414 (420)
Q Consensus       414 ~  414 (420)
                      .
T Consensus       238 ~  238 (399)
T PRK05579        238 V  238 (399)
T ss_pred             c
Confidence            4

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=90.01  E-value=13  Score=36.11  Aligned_cols=36  Identities=11%  Similarity=0.147  Sum_probs=29.0

Q ss_pred             EeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCC
Q 014691           28 VPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNF   63 (420)
Q Consensus        28 v~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~   63 (420)
                      ++.-.++.+...+-++...+.|+|++|+=+=+=++.
T Consensus        21 i~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~   56 (263)
T CHL00200         21 ITAGDPDIVITKKALKILDKKGADIIELGIPYSDPL   56 (263)
T ss_pred             EeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
Confidence            457788999999888888889999999987654433

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=89.94  E-value=0.53  Score=47.11  Aligned_cols=39  Identities=23%  Similarity=0.261  Sum_probs=32.3

Q ss_pred             CCCEEEEEccchHHHHHHHHHHh-CCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~-~g~-~i~v~nR~~~ka~  418 (420)
                      .|.+|+|+|+|++|..++..++. .|. +|++++++++|.+
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~  203 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLD  203 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHH
Confidence            47899999999999998877765 565 8999999887754

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=89.82  E-value=1  Score=39.61  Aligned_cols=36  Identities=31%  Similarity=0.439  Sum_probs=32.5

Q ss_pred             cccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691          377 SALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       377 ~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR  412 (420)
                      .+++||+++|+|.+. .|+.++.-|.+.|+.++++++
T Consensus        24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~   60 (140)
T cd05212          24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW   60 (140)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCC
Confidence            678999999999866 899999999999999999985

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=89.81  E-value=0.88  Score=40.98  Aligned_cols=48  Identities=35%  Similarity=0.420  Sum_probs=35.3

Q ss_pred             HHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeCC
Q 014691          355 VGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       355 ~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR~  413 (420)
                      .|++..|+..           +.+++||+++|+|.++ +|+.++.-|.+.|+.|+++...
T Consensus        21 ~aii~lL~~~-----------~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~   69 (160)
T PF02882_consen   21 LAIIELLEYY-----------GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK   69 (160)
T ss_dssp             HHHHHHHHHT-----------T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT
T ss_pred             HHHHHHHHhc-----------CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC
Confidence            4666666543           2578999999999887 9999999999999999998764

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=89.79  E-value=0.46  Score=50.27  Aligned_cols=35  Identities=34%  Similarity=0.434  Sum_probs=32.0

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+++++|||+|.+|.+++..|...|.+|+|+.+..
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~  176 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED  176 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            56899999999999999999999999999998753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=89.74  E-value=1.4  Score=43.62  Aligned_cols=124  Identities=19%  Similarity=0.324  Sum_probs=74.6

Q ss_pred             HHHHHHcCCCceeeccc--c--ccHHHHHHHh-cCCCCCEEEEcccchHHH--HhhhhcccHHHHHhcceeEEEEeccCC
Q 014691          273 NEAFKSVGFNGVFVHLL--V--DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~--~--~~l~~~~~~~-~~~~~~G~~VT~P~K~~i--~~~~d~l~~~A~~iGAvNTi~~~~~~g  345 (420)
                      ....+++|++.....++  +  +++.+.++.+ .++.+.|+-|-.|.-..+  -..++.+++ .+.+-..+..-    -|
T Consensus        55 ~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p-~KDVDGl~~~n----~g  129 (297)
T PRK14168         55 IKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDP-DKDVDGFHPVN----VG  129 (297)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc-cccccccChhh----HH
Confidence            45688899997655443  2  3677777777 567899999999964211  011111111 11111111110    01


Q ss_pred             eE-EEE------ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhC----CCeEEEEeC
Q 014691          346 KL-FGY------NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAK----GARVVIANR  412 (420)
Q Consensus       346 ~l-~G~------NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~----g~~i~v~nR  412 (420)
                      ++ .|.      -.--.|++.-|+..           +.+++||+|+|||.+. +|+-++.-|.+.    ++.|+++.+
T Consensus       130 ~l~~~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs  197 (297)
T PRK14168        130 RLMIGGDEVKFLPCTPAGIQEMLVRS-----------GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHT  197 (297)
T ss_pred             HHhcCCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecC
Confidence            11 111      11145666655543           3678999999999877 999999999887    678998864

>PLN02256 arogenate dehydrogenase

Probab=89.58  E-value=0.77  Score=45.66  Aligned_cols=37  Identities=22%  Similarity=0.211  Sum_probs=33.1

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      -+++++.|||.|.+|.+++.+|.+.|.+|++++|+..
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~   70 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY   70 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH
Confidence            3567999999999999999999999989999999863

>PRK06487 glycerate dehydrogenase; Provisional

Probab=89.51  E-value=0.54  Score=47.02  Aligned_cols=37  Identities=38%  Similarity=0.476  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ..+.||++.|+|-|..|++++..|.-+|++|..++|.
T Consensus       144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~  180 (317)
T PRK06487        144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLP  180 (317)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCC
Confidence            3578999999999999999999999999999999986

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=89.45  E-value=22  Score=34.57  Aligned_cols=34  Identities=12%  Similarity=0.172  Sum_probs=28.5

Q ss_pred             EeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCC
Q 014691           28 VPIMGESVDKMVVDMGKANASGADLVEIRLDGLK   61 (420)
Q Consensus        28 v~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~   61 (420)
                      ++.-.++.+...+-++...+.|+|++|+=+=+=+
T Consensus        18 i~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSD   51 (258)
T PRK13111         18 ITAGDPDLETSLEIIKALVEAGADIIELGIPFSD   51 (258)
T ss_pred             EeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence            4578889999999888888899999999876643

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=89.42  E-value=0.57  Score=46.70  Aligned_cols=38  Identities=37%  Similarity=0.454  Sum_probs=34.6

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+.||++.|||-|..|++++.-+.-+|++|..++|+.
T Consensus       141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~  178 (311)
T PRK08410        141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSG  178 (311)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCc
Confidence            35789999999999999999999999999999999864

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=89.34  E-value=11  Score=35.02  Aligned_cols=111  Identities=19%  Similarity=0.157  Sum_probs=61.1

Q ss_pred             HHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 014691           38 MVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDV  117 (420)
Q Consensus        38 ~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDi  117 (420)
                      ..+.++.....|+|++=+--|--......+.++.+++..++|+++  +    |+  -.+++    .++.+.+.|+|.|=+
T Consensus        33 ~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~--~----~~--i~~~~----~v~~~~~~Gad~v~l  100 (217)
T cd00331          33 PVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLR--K----DF--IIDPY----QIYEARAAGADAVLL  100 (217)
T ss_pred             HHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEE--C----Ce--ecCHH----HHHHHHHcCCCEEEE
Confidence            445455556779999933222111112234566676667899995  1    12  12322    466778889998864


Q ss_pred             Ecc-cccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 014691          118 ELQ-VAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIV  170 (420)
Q Consensus       118 El~-~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDiv  170 (420)
                      -.. ...+..+++. ..+.-+..+++..|+      ++|    ++++.+.|+|++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~------~~e----~~~~~~~g~~~i  145 (217)
T cd00331         101 IVAALDDEQLKELYELARELGMEVLVEVHD------EEE----LERALALGAKII  145 (217)
T ss_pred             eeccCCHHHHHHHHHHHHHcCCeEEEEECC------HHH----HHHHHHcCCCEE
Confidence            322 1112333333 123357777888773      334    455566788887

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=89.30  E-value=0.62  Score=47.12  Aligned_cols=38  Identities=39%  Similarity=0.492  Sum_probs=33.8

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      +.+|+|+|+|.+|..++..+...|+ +|++++++++|.+
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~  207 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLE  207 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH
Confidence            3489999999999999888999998 9999999988764

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=89.28  E-value=0.14  Score=44.24  Aligned_cols=38  Identities=32%  Similarity=0.389  Sum_probs=31.1

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCe-EEEEeCChhhhhc
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYENLQR  419 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~-i~v~nR~~~ka~~  419 (420)
                      -++-|||+|-+|.+.+.+|.+.|.+ +-+++|+.+.++.
T Consensus        11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~   49 (127)
T PF10727_consen   11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAER   49 (127)
T ss_dssp             -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccc
Confidence            4899999999999999999999995 5677898866553

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.22  E-value=0.55  Score=46.24  Aligned_cols=41  Identities=22%  Similarity=0.519  Sum_probs=35.4

Q ss_pred             cccCCCEEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGaG-Gaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      -+.+|+.|||=|+| |.||+++..++++|+++.+++.|.+-.
T Consensus        34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~   75 (300)
T KOG1201|consen   34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGN   75 (300)
T ss_pred             hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccch
Confidence            46789999999975 699999999999999999999886544

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=89.20  E-value=2.3  Score=43.13  Aligned_cols=87  Identities=18%  Similarity=0.242  Sum_probs=53.8

Q ss_pred             ecCCCHHHHHHHH----HhhhhcCCCEEEEEecC------------------CCCC-Cc-----hhHHHHHHhhCC----
Q 014691           30 IMGESVDKMVVDM----GKANASGADLVEIRLDG------------------LKNF-NP-----RENIKTLIKESP----   77 (420)
Q Consensus        30 l~~~~~~e~~~~~----~~~~~~~~D~vElRlD~------------------l~~~-~~-----~~~l~~l~~~~~----   77 (420)
                      ++..++++++++.    +++.+.|.|.||+-..+                  +... ++     .+.++.+++...    
T Consensus       134 mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~  213 (353)
T cd04735         134 LTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHAD  213 (353)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccC
Confidence            4555555554443    34556799999997542                  2111 11     123444554444    


Q ss_pred             CcEEEEeccCC----CCCCCCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 014691           78 VPTLFTYRPIW----EGGQYDGDENERVDVLRLAMELGADYIDVEL  119 (420)
Q Consensus        78 ~PiI~T~R~~~----eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl  119 (420)
                      .++.+-+|-..    +||.   +.++..++++.+.+.|+|||+|-.
T Consensus       214 ~~~~v~~R~s~~~~~~~g~---~~ee~~~i~~~L~~~GvD~I~Vs~  256 (353)
T cd04735         214 KDFILGYRFSPEEPEEPGI---RMEDTLALVDKLADKGLDYLHISL  256 (353)
T ss_pred             CCceEEEEECcccccCCCC---CHHHHHHHHHHHHHcCCCEEEecc
Confidence            56778888653    3342   457778888888899999999964

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PLN02463 lycopene beta cyclase

Probab=89.18  E-value=0.46  Score=49.82  Aligned_cols=33  Identities=30%  Similarity=0.358  Sum_probs=30.2

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      -.|+|||+|.+|.++|+.|++.|.+|.|+++.+
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~   61 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP   61 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence            369999999999999999999999999998864

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=89.14  E-value=0.51  Score=52.46  Aligned_cols=37  Identities=32%  Similarity=0.521  Sum_probs=33.9

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ++|.|||||-+|+.+++.++..|++|++++++.+..+
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~  350 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALD  350 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence            6899999999999999999999999999999977643

>PRK06199 ornithine cyclodeaminase; Validated

Probab=89.12  E-value=0.47  Score=48.72  Aligned_cols=39  Identities=26%  Similarity=0.371  Sum_probs=34.1

Q ss_pred             CCEEEEEccchHHHHHHHHHHhC--CC-eEEEEeCChhhhhc
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAK--GA-RVVIANRTYENLQR  419 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~--g~-~i~v~nR~~~ka~~  419 (420)
                      -+++.|||+|.-|+.-+.++...  .+ +|+|+||+.+++++
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~  196 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDS  196 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHH
Confidence            47899999999999999998764  37 99999999999875

>PRK14852 hypothetical protein; Provisional

Probab=89.11  E-value=0.42  Score=54.24  Aligned_cols=107  Identities=11%  Similarity=0.119  Sum_probs=64.4

Q ss_pred             cEEEEEcccCCC----CCCHHHH-HHHHHHHHHcC---CCEEEEEeecCCHHHH--HHHHHHh------ccCCCCEEEEe
Q 014691          137 CKVIVSSHNYQY----TPSVEDL-SNLVARIQASG---ADIVKFATTALDITDV--ARVFQIT------VHSQVPIIGLV  200 (420)
Q Consensus       137 ~kiI~S~H~f~~----tP~~~el-~~~~~~~~~~g---aDivKia~~~~s~~D~--~~ll~~~------~~~~~p~I~~~  200 (420)
                      ..+|.|.|....    .++.+++ ...++...+.|   |++-|+|+-+....-.  ..++++.      ...+-=+|+++
T Consensus        84 ~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~Vn  163 (989)
T PRK14852         84 HDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVN  163 (989)
T ss_pred             CcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEEC
Confidence            456666664322    1233433 44566677777   6777888754332211  2222322      22344577777


Q ss_pred             cCCcchhhhhhc-cccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691          201 MGERGLISRILC-AKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (420)
Q Consensus       201 MG~~G~~SRi~~-~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~  245 (420)
                      ==..+-..|+++ ..+|..=+|..++.+  +.--.+++.++++.+.
T Consensus       164 PkH~~FY~r~l~f~~ig~~r~~p~VnaP--Avll~~dl~~~~~~~~  207 (989)
T PRK14852        164 PKHVKFYTDIFLFKPFGEVRHYDTVDAP--AVALRIDLHEAMDELQ  207 (989)
T ss_pred             cchHHHHHHHhCCccccccccCCCCCcc--hhheecCHHHHHHHHH
Confidence            777788999998 778888788888642  4445788888777665

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=89.03  E-value=8.6  Score=37.49  Aligned_cols=88  Identities=17%  Similarity=0.203  Sum_probs=53.0

Q ss_pred             CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccccc-----------chhHHHhh-cCCC-CcEEEEE
Q 014691           76 SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR-----------EFNDSIRG-KKPE-KCKVIVS  142 (420)
Q Consensus        76 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~-----------~~~~~l~~-~~~~-~~kiI~S  142 (420)
                      .+.|+++.++..        +.+++.+..+.+.+.|+|+|+|-+.++.           +...++.. .++. +..|++=
T Consensus        97 ~~~pvi~si~g~--------~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vK  168 (289)
T cd02810          97 PGQPLIASVGGS--------SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVK  168 (289)
T ss_pred             CCCeEEEEeccC--------CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEE
Confidence            468999999832        5577888888888889999999876542           12222221 1111 2222221


Q ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Q 014691          143 SHNYQYTPSVEDLSNLVARIQASGADIVKFAT  174 (420)
Q Consensus       143 ~H~f~~tP~~~el~~~~~~~~~~gaDivKia~  174 (420)
                      .   ....+.+++.++.+.+.+.|+|.+.+..
T Consensus       169 l---~~~~~~~~~~~~a~~l~~~Gad~i~~~~  197 (289)
T cd02810         169 L---SPYFDLEDIVELAKAAERAGADGLTAIN  197 (289)
T ss_pred             e---CCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence            1   0111345677777777778888777653

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=89.02  E-value=0.57  Score=46.87  Aligned_cols=39  Identities=46%  Similarity=0.633  Sum_probs=34.0

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|+|+|+|++|.+++..+...|++|+++.++++|.+
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~  204 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLE  204 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHH
Confidence            478999999999999999999999999888888877653

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=89.01  E-value=0.66  Score=49.66  Aligned_cols=37  Identities=38%  Similarity=0.451  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ..+.||++.|+|-|.+|++++..|..+|++|+.++|.
T Consensus       134 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~  170 (525)
T TIGR01327       134 TELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPY  170 (525)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCC
Confidence            4578999999999999999999999999999999984

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase

Probab=89.01  E-value=1.7  Score=43.58  Aligned_cols=62  Identities=19%  Similarity=0.326  Sum_probs=45.5

Q ss_pred             CCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEE
Q 014691          135 EKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIG  198 (420)
Q Consensus       135 ~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~  198 (420)
                      ++..|.+-.-....|-+.+...+.+.++.+.|||||++|+.  +.++...+-...+..++|+|+
T Consensus        16 G~~PI~VQSMtnt~T~Dv~atv~QI~~L~~aGceiVRvavp--~~~~A~al~~I~~~~~iPlVA   77 (346)
T TIGR00612        16 GDAPIVVQSMTNTDTIDIDSTVAQIRALEEAGCDIVRVTVP--DRESAAAFEAIKEGTNVPLVA   77 (346)
T ss_pred             CCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHhHHHHHhCCCCCEEE
Confidence            34455444333334556677888889999999999999998  777777777777777889886

Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.

>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=89.01  E-value=0.52  Score=39.68  Aligned_cols=35  Identities=14%  Similarity=0.207  Sum_probs=28.7

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      |++||+|.|..|.-++.++.++|++..+++-++++
T Consensus         3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~   37 (110)
T PF00289_consen    3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNPDT   37 (110)
T ss_dssp             SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCcceeccCchhc
Confidence            68999999999999999999999966666655544

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]

Probab=88.96  E-value=1.8  Score=43.26  Aligned_cols=144  Identities=18%  Similarity=0.296  Sum_probs=81.2

Q ss_pred             CcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEE-EecCCcchhhhhhccc
Q 014691          136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIG-LVMGERGLISRILCAK  214 (420)
Q Consensus       136 ~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~-~~MG~~G~~SRi~~~~  214 (420)
                      +..|.+-.-....|-+.+.-.+.+.++.+.|||||++++.  +.++...+-...++.+.|+|+ |=--     -|++-..
T Consensus        19 daPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~--~~e~A~A~~~Ik~~~~vPLVaDiHf~-----~rla~~~   91 (361)
T COG0821          19 DAPIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVP--DMEAAEALKEIKQRLNVPLVADIHFD-----YRLALEA   91 (361)
T ss_pred             CCceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhCCCCEEEEeecc-----HHHHHHh
Confidence            4445444444556667777888899999999999999997  777877777777777999986 2111     1222110


Q ss_pred             cCCcccccccCCCccCCCCCCCHHh-HHHHHhccccCCCceEEeeeccCcccc--------------ccHHHHHHHHHHc
Q 014691          215 FGGFLTFGTLENGIVSAPGQPTIKD-LLDLYNFRQMGPDTKVFGIIGKPVGHS--------------KSPILYNEAFKSV  279 (420)
Q Consensus       215 ~Gs~ltf~~~~~~~~sAPGQ~~~~~-l~~~~~~~~~~~~~~~~~v~G~pv~hS--------------~SP~ihn~~f~~~  279 (420)
                          .-|+ +..- .-.||-+-..+ ..++.+...-...+-++||=.-.+..-              -|-.-|-..++++
T Consensus        92 ----~~~g-~~k~-RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l  165 (361)
T COG0821          92 ----AECG-VDKV-RINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEEL  165 (361)
T ss_pred             ----hhcC-cceE-EECCcccCcHHHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHC
Confidence                1111 1111 14577776554 444443322222344555433222211              2444566778888


Q ss_pred             CCCceeecccccc
Q 014691          280 GFNGVFVHLLVDD  292 (420)
Q Consensus       280 gl~~~y~~~~~~~  292 (420)
                      |++-.-..+...+
T Consensus       166 ~f~~i~iS~K~Sd  178 (361)
T COG0821         166 GFDDIKVSVKASD  178 (361)
T ss_pred             CCCcEEEEEEcCC
Confidence            8875444443333

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=88.95  E-value=0.49  Score=51.99  Aligned_cols=35  Identities=29%  Similarity=0.402  Sum_probs=32.1

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      +..+|+|+|+|-+|.++|.+|.+.|++++|+.|..
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            34689999999999999999999999999999975

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=88.94  E-value=3.2  Score=41.90  Aligned_cols=88  Identities=23%  Similarity=0.263  Sum_probs=51.6

Q ss_pred             ecCCCHHHHHHH----HHhhhhcCCCEEEEEecC------------------CCCC-Cc-----hhHHHHHHhhCCCcEE
Q 014691           30 IMGESVDKMVVD----MGKANASGADLVEIRLDG------------------LKNF-NP-----RENIKTLIKESPVPTL   81 (420)
Q Consensus        30 l~~~~~~e~~~~----~~~~~~~~~D~vElRlD~------------------l~~~-~~-----~~~l~~l~~~~~~PiI   81 (420)
                      ++..++++++++    ++++.+.|.|.||+-.-+                  +... ++     .+.++.+++..+.|+.
T Consensus       132 mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~  211 (337)
T PRK13523        132 MTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLF  211 (337)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeE
Confidence            444444444433    334456799999997663                  1110 01     1234455555556655


Q ss_pred             EEeccC--CCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcc
Q 014691           82 FTYRPI--WEGGQYDGDENERVDVLRLAMELGADYIDVELQ  120 (420)
Q Consensus        82 ~T~R~~--~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~  120 (420)
                      +-++..  .+||   .+.++..++.+.+.+.|+|||+|-..
T Consensus       212 vRis~~d~~~~G---~~~~e~~~i~~~l~~~gvD~i~vs~g  249 (337)
T PRK13523        212 VRISASDYHPGG---LTVQDYVQYAKWMKEQGVDLIDVSSG  249 (337)
T ss_pred             EEecccccCCCC---CCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence            544431  2233   25678888888888889999998654

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=88.93  E-value=0.69  Score=47.48  Aligned_cols=39  Identities=26%  Similarity=0.285  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..++++++|.|+ |..|+.++..|.+.|.+|+++.|+.++
T Consensus        57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~   96 (390)
T PLN02657         57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSG   96 (390)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence            346789999997 779999999999999999999998754

>PLN02985 squalene monooxygenase

Probab=88.91  E-value=0.52  Score=50.34  Aligned_cols=34  Identities=35%  Similarity=0.600  Sum_probs=31.3

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ...|+|+|||-+|.+++++|++.|.+|.|+.|..
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            3479999999999999999999999999999974

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed

Probab=88.85  E-value=1.7  Score=43.81  Aligned_cols=62  Identities=24%  Similarity=0.391  Sum_probs=45.7

Q ss_pred             CCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEE
Q 014691          135 EKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIG  198 (420)
Q Consensus       135 ~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~  198 (420)
                      ++..|.+-.-....|-+.+...+.+.++.+.|||||++|+.  +.+|...+-...+..++|+|+
T Consensus        24 g~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~--~~~~a~al~~I~~~~~iPlvA   85 (360)
T PRK00366         24 GDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVP--DMEAAAALPEIKKQLPVPLVA   85 (360)
T ss_pred             CCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccC--CHHHHHhHHHHHHcCCCCEEE
Confidence            44455444433444556677888889999999999999998  677777777776777888886

>PRK06823 ornithine cyclodeaminase; Validated

Probab=88.85  E-value=0.54  Score=46.98  Aligned_cols=39  Identities=13%  Similarity=0.126  Sum_probs=33.9

Q ss_pred             CCEEEEEccchHHHHHHHHHHhC-CC-eEEEEeCChhhhhc
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYENLQR  419 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~-g~-~i~v~nR~~~ka~~  419 (420)
                      -+++.|||+|.-|+.-+.++... .. +|+|+||+.+++++
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~  168 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEE  168 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHH
Confidence            47899999999999999888654 45 89999999999875

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=88.83  E-value=5  Score=39.55  Aligned_cols=38  Identities=18%  Similarity=0.265  Sum_probs=29.8

Q ss_pred             CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEEccc
Q 014691           76 SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQV  121 (420)
Q Consensus        76 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~-~d~iDiEl~~  121 (420)
                      .+.|+++.+.     |.   +.+++.+..+.+.+.| +|+|+|-+.+
T Consensus        90 ~~~p~i~si~-----g~---~~~~~~~~a~~~~~aG~~D~iElN~~c  128 (301)
T PRK07259         90 FDTPIIANVA-----GS---TEEEYAEVAEKLSKAPNVDAIELNISC  128 (301)
T ss_pred             cCCcEEEEec-----cC---CHHHHHHHHHHHhccCCcCEEEEECCC
Confidence            4789999997     22   4678888888888888 9999986644

>PTZ00188 adrenodoxin reductase; Provisional

Probab=88.81  E-value=0.63  Score=49.32  Aligned_cols=35  Identities=17%  Similarity=0.037  Sum_probs=30.3

Q ss_pred             CCCEEEEEccchHHHHHHHHHH-hCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAK-AKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~-~~g~~i~v~nR~~  414 (420)
                      ..++|+|||+|.+|-.+|..|. +.|++|+|+.|.+
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p   73 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP   73 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            4679999999999999998764 6788999999864

>PLN02572 UDP-sulfoquinovose synthase

Probab=88.78  E-value=0.72  Score=48.22  Aligned_cols=36  Identities=33%  Similarity=0.385  Sum_probs=32.0

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeC
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR  412 (420)
                      ..++++++||.|+ |+.|+.++..|.+.|++|++++|
T Consensus        43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~   79 (442)
T PLN02572         43 SSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDN   79 (442)
T ss_pred             ccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEec
Confidence            4578899999996 88999999999999999998764

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=88.73  E-value=0.69  Score=45.83  Aligned_cols=39  Identities=31%  Similarity=0.389  Sum_probs=34.1

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCe-EEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~-i~v~nR~~~ka~  418 (420)
                      .|.+++|+|+|++|.+++..+...|++ |++++++.+|.+
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~  202 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLE  202 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            478999999999999999999999995 999998877643

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=88.71  E-value=13  Score=35.46  Aligned_cols=111  Identities=18%  Similarity=0.077  Sum_probs=60.3

Q ss_pred             CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccc----------------hhHHHhh-cCCCCcE
Q 014691           76 SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVARE----------------FNDSIRG-KKPEKCK  138 (420)
Q Consensus        76 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~----------------~~~~l~~-~~~~~~k  138 (420)
                      .+.|+++.+|.        .+.+++.++.+...+ ++++|||-..++..                ...++.. .+..+..
T Consensus        66 ~~~~vivnv~~--------~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~P  136 (231)
T TIGR00736        66 SRALVSVNVRF--------VDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKP  136 (231)
T ss_pred             hcCCEEEEEec--------CCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCc
Confidence            46799999994        266788888777655 69999998877542                2222221 1222333


Q ss_pred             EEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH--HHHHHHHHHhccC-CCCEEE
Q 014691          139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI--TDVARVFQITVHS-QVPIIG  198 (420)
Q Consensus       139 iI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~--~D~~~ll~~~~~~-~~p~I~  198 (420)
                      |.+=.--  .. +..+..+..+.+.+.|+|.+-+-.+-...  .|...+-++.... ++|+|+
T Consensus       137 VsvKiR~--~~-~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIg  196 (231)
T TIGR00736       137 IFVKIRG--NC-IPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIG  196 (231)
T ss_pred             EEEEeCC--CC-CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEE
Confidence            3322110  00 12345566677777888877665433221  2333333333333 366555

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=88.70  E-value=0.48  Score=50.76  Aligned_cols=35  Identities=34%  Similarity=0.449  Sum_probs=31.6

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      ...|+|+|||.+|.+++..|.+.|+++.|+.|..+
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~   57 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT   57 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            35799999999999999999999999999998753

>PRK06932 glycerate dehydrogenase; Provisional

Probab=88.59  E-value=0.66  Score=46.34  Aligned_cols=38  Identities=26%  Similarity=0.357  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+.||++.|||-|..||+++.-|..+|++|..++|..
T Consensus       143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~  180 (314)
T PRK06932        143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKG  180 (314)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCc
Confidence            35789999999999999999999999999998888864

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=88.58  E-value=6.6  Score=40.50  Aligned_cols=133  Identities=13%  Similarity=0.113  Sum_probs=85.9

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHH
Q 014691           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENER  100 (420)
Q Consensus        22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~  100 (420)
                      +.|+++|.|-..|.+++++-++++.....+++|+=.-++..+.. +.++.+++. .+.|+.+.+-...        ...+
T Consensus       171 ~~p~L~vALD~~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~-~iVk~Lr~~~~~~~I~~DLK~~D--------i~~~  241 (391)
T PRK13307        171 DPPYLQVALDLPDLEEVERVLSQLPKSDHIIIEAGTPLIKKFGL-EVISKIREVRPDAFIVADLKTLD--------TGNL  241 (391)
T ss_pred             ccceEEEecCCCCHHHHHHHHHhcccccceEEEECHHHHHHhCH-HHHHHHHHhCCCCeEEEEecccC--------hhhH
Confidence            45899999999999999998877644446788887777765433 356777665 4678988887532        1122


Q ss_pred             HHHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEE-EcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 014691          101 VDVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIV-SSHNYQYTPSVEDLSNLVARIQASGADIVKFA  173 (420)
Q Consensus       101 ~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~-~~~~~~~kiI~-S~H~f~~tP~~~el~~~~~~~~~~gaDivKia  173 (420)
                      .  .+.+.+.|+|++-+=.....+.+.... ..++.+.++++ ..|..  ||     .+.++.+ ..+.|++-+-
T Consensus       242 v--v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~--tp-----~e~i~~l-~~~vD~Vllh  306 (391)
T PRK13307        242 E--ARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVE--DP-----VKLLESL-KVKPDVVELH  306 (391)
T ss_pred             H--HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCC--CH-----HHHHHHh-hCCCCEEEEc
Confidence            1  667788899999887655543333333 33456778877 55521  22     2233333 4577887555

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.55  E-value=0.66  Score=48.28  Aligned_cols=36  Identities=42%  Similarity=0.509  Sum_probs=32.3

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCC
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      .+++++++|.|+ ||.|++++..|.+.|++|++++|.
T Consensus       207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~  243 (450)
T PRK08261        207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVP  243 (450)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            457899999997 899999999999999999988884

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=88.54  E-value=0.65  Score=48.86  Aligned_cols=38  Identities=37%  Similarity=0.422  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ....+++|.|||+|+++.++++-|...|..|+|+.|..
T Consensus       119 ~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~  156 (457)
T COG0493         119 GSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA  156 (457)
T ss_pred             CCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence            35567999999999999999999999999999988753

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=88.50  E-value=0.6  Score=51.87  Aligned_cols=38  Identities=32%  Similarity=0.487  Sum_probs=34.4

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      -++|.|||||-+|..+++.++..|.+|++++++.+..+
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~  350 (714)
T TIGR02437       313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLD  350 (714)
T ss_pred             cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence            36899999999999999999999999999999977654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK14030 glutamate dehydrogenase; Provisional

Probab=88.43  E-value=1.2  Score=46.46  Aligned_cols=50  Identities=26%  Similarity=0.313  Sum_probs=41.5

Q ss_pred             CHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEE
Q 014691          353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVI  409 (420)
Q Consensus       353 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v  409 (420)
                      -++|.+.+++..+...       +.+++|++|+|-|.|.+|..++..|.+.|++|+.
T Consensus       207 Tg~Gv~~~~~~~~~~~-------g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVa  256 (445)
T PRK14030        207 TGFGALYFVHQMLETK-------GIDIKGKTVAISGFGNVAWGAATKATELGAKVVT  256 (445)
T ss_pred             cHHHHHHHHHHHHHHc-------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            3788888887766431       3578999999999999999999999999997665

>TIGR00190 thiC thiamine biosynthesis protein ThiC

Probab=88.40  E-value=2.9  Score=42.82  Aligned_cols=227  Identities=16%  Similarity=0.206  Sum_probs=127.4

Q ss_pred             EeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHH-HHHhhCCCcE----EEEeccCCCCCCCCCCHHHHHH
Q 014691           28 VPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIK-TLIKESPVPT----LFTYRPIWEGGQYDGDENERVD  102 (420)
Q Consensus        28 v~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~-~l~~~~~~Pi----I~T~R~~~eGG~~~~~~~~~~~  102 (420)
                      ++-...++++-++.++.+.+.|||.|   .|+=..-+ ...++ .+++.+++|+    ||-.=....+.....++++.++
T Consensus        69 tS~~~~d~~~E~~K~~~A~~~GADti---MDLStGgd-l~~iR~~il~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~  144 (423)
T TIGR00190        69 TSADTSDIEEEVEKALIAIKYGADTV---MDLSTGGD-LDEIRKAILDAVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFR  144 (423)
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCeE---eeccCCCC-HHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHH
Confidence            34455667777777888888999887   45432212 22233 3445555554    2221111123455678899999


Q ss_pred             HHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEc----------ccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          103 VLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSS----------HNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       103 ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~----------H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      .++.-++.|+||+.|--....+.++.+..  .++.-=|+|.          |+-++.|=.++...+++-++++.. .+-+
T Consensus       145 ~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~--~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~yDV-tlSL  221 (423)
T TIGR00190       145 AIEKQAKDGVDFMTIHAGVLLEYVERLKR--SGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEYDV-TLSL  221 (423)
T ss_pred             HHHHHHHhCCCEEEEccchhHHHHHHHHh--CCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCe-eeec
Confidence            99999999999999988777777666643  2333346675          777888867676667776666541 1111


Q ss_pred             --EeecCCHH---HHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhcc
Q 014691          173 --ATTALDIT---DVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFR  247 (420)
Q Consensus       173 --a~~~~s~~---D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~  247 (420)
                        ...|-...   |-..+.++          +..|++-+-.|=.+    -    -.+-+    .||.+++.++..-.++.
T Consensus       222 GDglRPG~i~DA~D~aQi~El----------~~lgeL~~rA~e~g----V----QvMVE----GPGHvPl~~I~~nv~lq  279 (423)
T TIGR00190       222 GDGLRPGCIADATDRAQISEL----------ITLGELVERAREAD----V----QCMVE----GPGHVPLDQIEANVRLQ  279 (423)
T ss_pred             cCCcCCCccccCCcHHHHHHH----------HHHHHHHHHHHHcC----C----eEEEE----CCCCCcHHHHHHHHHHH
Confidence              12232222   33333332          12233333222221    1    11223    39999999988766643


Q ss_pred             ccCCCceEEeeeccCccc------cccHHHHHHHHHHcCCCc
Q 014691          248 QMGPDTKVFGIIGKPVGH------SKSPILYNEAFKSVGFNG  283 (420)
Q Consensus       248 ~~~~~~~~~~v~G~pv~h------S~SP~ihn~~f~~~gl~~  283 (420)
                      +-.-+---|||+|-=++-      -.+-.|=-+.....|-|.
T Consensus       280 K~lc~~APfYvLGPLvTDiApGYDHItsAIGgAiAa~~GAdf  321 (423)
T TIGR00190       280 KELCDEAPFYVLGPLVTDIAPGYDHITSAIGAAIAGWAGADF  321 (423)
T ss_pred             HHhhCCCCeeecCCcccccCCCchHHHHHHHHHHHHHcCCCe
Confidence            221122367888843321      134456556666677775

The thiC ortholog is designated thiA in Bacillus subtilis.

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=88.37  E-value=0.62  Score=46.27  Aligned_cols=39  Identities=18%  Similarity=0.359  Sum_probs=34.0

Q ss_pred             CCEEEEEccchHHHHHHHHHHhC-CC-eEEEEeCChhhhhc
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYENLQR  419 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~-g~-~i~v~nR~~~ka~~  419 (420)
                      -+++.|||+|.-|+.-+.++... .. +|.|+||+.+++++
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~  157 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARA  157 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHH
Confidence            47899999999999988888754 56 89999999999875

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=88.34  E-value=7.2  Score=36.56  Aligned_cols=117  Identities=24%  Similarity=0.268  Sum_probs=74.0

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEE---EeccCCCCCCCCCCHHHHHH
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLF---TYRPIWEGGQYDGDENERVD  102 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~---T~R~~~eGG~~~~~~~~~~~  102 (420)
                      +...+...+.++...-++.+.+.|..++|+-++. +  +..+.++.+++..+- +++   |+.          +.+    
T Consensus        10 liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t-~--~a~~~i~~l~~~~~~-~~vGAGTVl----------~~~----   71 (204)
T TIGR01182        10 IVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRT-P--VALDAIRLLRKEVPD-ALIGAGTVL----------NPE----   71 (204)
T ss_pred             EEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCC-c--cHHHHHHHHHHHCCC-CEEEEEeCC----------CHH----
Confidence            4456889999999999999889999999999864 1  223446666554431 332   332          222    


Q ss_pred             HHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Q 014691          103 VLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT  174 (420)
Q Consensus       103 ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~  174 (420)
                      -.+.+++.|++|+ |-=..+++..+..   ++.+...|--.    -||++      +.++.++|+|++|+--
T Consensus        72 ~a~~a~~aGA~Fi-vsP~~~~~v~~~~---~~~~i~~iPG~----~TptE------i~~A~~~Ga~~vKlFP  129 (204)
T TIGR01182        72 QLRQAVDAGAQFI-VSPGLTPELAKHA---QDHGIPIIPGV----ATPSE------IMLALELGITALKLFP  129 (204)
T ss_pred             HHHHHHHcCCCEE-ECCCCCHHHHHHH---HHcCCcEECCC----CCHHH------HHHHHHCCCCEEEECC
Confidence            3556788899998 4334444444433   23455554322    26643      5566679999999865

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>PLN02740 Alcohol dehydrogenase-like

Probab=88.19  E-value=0.78  Score=46.66  Aligned_cols=39  Identities=33%  Similarity=0.581  Sum_probs=34.3

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++|+|+|+|++|.+++..+..+|+ +|+.++++.+|.+
T Consensus       198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~  237 (381)
T PLN02740        198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFE  237 (381)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHH
Confidence            47899999999999999999999999 7998988877654

>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

Probab=88.15  E-value=0.57  Score=45.07  Aligned_cols=35  Identities=26%  Similarity=0.366  Sum_probs=31.4

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~  414 (420)
                      +..+|+|+|+||.|..++..|+..|+ +++|++.+.
T Consensus        29 ~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~   64 (254)
T COG0476          29 KDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDT   64 (254)
T ss_pred             hhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCc
Confidence            34589999999999999999999999 999999763

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=88.10  E-value=0.8  Score=49.06  Aligned_cols=37  Identities=35%  Similarity=0.445  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ..+.||++.|+|.|.+|++++..|..+|++|+.++|+
T Consensus       136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~  172 (526)
T PRK13581        136 VELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPY  172 (526)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCC
Confidence            3578999999999999999999999999999999985

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=88.00  E-value=0.78  Score=43.07  Aligned_cols=39  Identities=46%  Similarity=0.702  Sum_probs=33.6

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+++++|.|+|++|++++..+...|.+|+++.++.++.+
T Consensus       134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~  172 (271)
T cd05188         134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLE  172 (271)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHH
Confidence            578999999999999999888889999999998876543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=88.00  E-value=1  Score=44.16  Aligned_cols=48  Identities=21%  Similarity=0.378  Sum_probs=36.9

Q ss_pred             HHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhC----CC-------eEEEEeCC
Q 014691          355 VGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAK----GA-------RVVIANRT  413 (420)
Q Consensus       355 ~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~----g~-------~i~v~nR~  413 (420)
                      .|++++++-.           +.++++.+++++|||.+|-+++.-|...    |+       +|+++||.
T Consensus        10 AgllnAlk~~-----------g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~   68 (279)
T cd05312          10 AGLLAALRIT-----------GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSK   68 (279)
T ss_pred             HHHHHHHHHh-----------CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCC
Confidence            3667776532           2467788999999999999988877665    76       79999975

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=87.94  E-value=0.95  Score=45.07  Aligned_cols=39  Identities=28%  Similarity=0.307  Sum_probs=33.2

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|.+++|.|+|+++.+++..+...|++|+.+.++.+|.+
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~  203 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARR  203 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHH
Confidence            478999999999999988888888998888888877644

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=87.93  E-value=7.5  Score=37.70  Aligned_cols=147  Identities=19%  Similarity=0.206  Sum_probs=79.3

Q ss_pred             hhcCCCEEEEEecCCC-------CCCc---h---hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH-hC
Q 014691           46 NASGADLVEIRLDGLK-------NFNP---R---ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAME-LG  111 (420)
Q Consensus        46 ~~~~~D~vElRlD~l~-------~~~~---~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~-~~  111 (420)
                      .+.|+|++ +==|.+.       +...   .   ...+.+.+..+.|+|+ .-.  +=|.+..+.++-.+--.+.++ .|
T Consensus        29 e~aG~d~i-~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~vi-aD~--~fg~y~~~~~~av~~a~r~~~~aG  104 (254)
T cd06557          29 DEAGVDVI-LVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVV-ADM--PFGSYQTSPEQALRNAARLMKEAG  104 (254)
T ss_pred             HHcCCCEE-EECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEE-EeC--CCCcccCCHHHHHHHHHHHHHHhC
Confidence            35689999 4444431       1111   1   2344555667889543 222  203344455555444444444 89


Q ss_pred             CcEEEEEccc-ccchhHHHhhcCCCCcEEE------EEcccCC-------CCCC-HHHHHHHHHHHHHcCCCEEEEEeec
Q 014691          112 ADYIDVELQV-AREFNDSIRGKKPEKCKVI------VSSHNYQ-------YTPS-VEDLSNLVARIQASGADIVKFATTA  176 (420)
Q Consensus       112 ~d~iDiEl~~-~~~~~~~l~~~~~~~~kiI------~S~H~f~-------~tP~-~~el~~~~~~~~~~gaDivKia~~~  176 (420)
                      ++.|-||-.. ..+.++.+.   ..++.++      -..+++.       .|.. .+++.+..+.+.+.|||.+=+=..+
T Consensus       105 a~aVkiEd~~~~~~~I~al~---~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~  181 (254)
T cd06557         105 ADAVKLEGGAEVAETIRALV---DAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECVP  181 (254)
T ss_pred             CeEEEEcCcHHHHHHHHHHH---HcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            9999999862 122333333   2344443      2222221       1221 3556666667778999988776654


Q ss_pred             CCHHHHHHHHHHhccCCCCEEEEecCCc
Q 014691          177 LDITDVARVFQITVHSQVPIIGLVMGER  204 (420)
Q Consensus       177 ~s~~D~~~ll~~~~~~~~p~I~~~MG~~  204 (420)
                      .  +..   -++.+..++|+|.|+-|+.
T Consensus       182 ~--~~~---~~i~~~v~iP~igiGaG~~  204 (254)
T cd06557         182 A--ELA---KEITEALSIPTIGIGAGPD  204 (254)
T ss_pred             H--HHH---HHHHHhCCCCEEEeccCCC
Confidence            2  333   3344445789999988873

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.92  E-value=0.9  Score=45.30  Aligned_cols=38  Identities=39%  Similarity=0.478  Sum_probs=33.9

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENL  417 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka  417 (420)
                      .|.+|||+|||..|......+.-.|+ +|.+++-.+.|.
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl  207 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL  207 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH
Confidence            47899999999999999999999999 999999776654

>PRK13352 thiamine biosynthesis protein ThiC; Provisional

Probab=87.91  E-value=3.1  Score=42.77  Aligned_cols=229  Identities=19%  Similarity=0.231  Sum_probs=130.4

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcE----EEE--ecc-CCCCCCCCCCHH
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT----LFT--YRP-IWEGGQYDGDEN   98 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~Pi----I~T--~R~-~~eGG~~~~~~~   98 (420)
                      |-++-...++++-++.++.+.+.|||.|   .|+=..-+..+.-+.+++.+++|+    ||-  .+. .+.|+....+++
T Consensus        67 IGtS~~~~d~~~E~~K~~~A~~~GADti---MDLStggdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d  143 (431)
T PRK13352         67 IGTSSDISDIEEELEKAKVAVKYGADTI---MDLSTGGDLDEIRRAIIEASPVPVGTVPIYQAAVEAARKYGSVVDMTED  143 (431)
T ss_pred             ecCCCCCCCHHHHHHHHHHHHHcCCCeE---eeccCCCCHHHHHHHHHHcCCCCCcChhHHHHHHHHHhcCCChhhCCHH
Confidence            3345556677788888888889999987   554332222222224455566554    221  222 234566678889


Q ss_pred             HHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEc----------ccCCCCCCHHHHHHHHHHHHHcCCC
Q 014691           99 ERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSS----------HNYQYTPSVEDLSNLVARIQASGAD  168 (420)
Q Consensus        99 ~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~----------H~f~~tP~~~el~~~~~~~~~~gaD  168 (420)
                      +.++.++.=++.|+||+.|--....+.++.+...  ++.-=|+|.          |+.++.|=.++...+++-++++.. 
T Consensus       144 ~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~--~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDV-  220 (431)
T PRK13352        144 DLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKS--GRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDV-  220 (431)
T ss_pred             HHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhc--CCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCe-
Confidence            9999999999999999999887777766666421  333336675          778889977677777776666541 


Q ss_pred             EEEE--EeecCCH---HHHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHH
Q 014691          169 IVKF--ATTALDI---TDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDL  243 (420)
Q Consensus       169 ivKi--a~~~~s~---~D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~  243 (420)
                      .+-+  ...|-..   .|-..+.++.          ..|++-+-.|=.+    -    -.+-+    .||.+++.++..-
T Consensus       221 tlSLGDglRPG~i~Da~D~aQi~El~----------~lgeL~~RA~e~g----V----QvMVE----GPGHvPl~~I~~n  278 (431)
T PRK13352        221 TLSLGDGLRPGCIADATDRAQIQELI----------TLGELVKRAREAG----V----QVMVE----GPGHVPLDQIEAN  278 (431)
T ss_pred             eeeccCCcCCCccccCCcHHHHHHHH----------HHHHHHHHHHHcC----C----eEEEE----CCCCCCHHHHHHH
Confidence            1111  1222222   2333333321          1233222222221    1    11223    3999999998876


Q ss_pred             Hhcc-ccCCCceEEeeeccCccc------cccHHHHHHHHHHcCCCc
Q 014691          244 YNFR-QMGPDTKVFGIIGKPVGH------SKSPILYNEAFKSVGFNG  283 (420)
Q Consensus       244 ~~~~-~~~~~~~~~~v~G~pv~h------S~SP~ihn~~f~~~gl~~  283 (420)
                      .++. ++. +---|||+|-=++-      -.+-.|=-+.....|-|.
T Consensus       279 v~l~K~lc-~~APfYvLGPLvTDiApGYDHIt~AIGgAiAa~~GAdf  324 (431)
T PRK13352        279 VKLQKRLC-HGAPFYVLGPLVTDIAPGYDHITSAIGGAIAAAAGADF  324 (431)
T ss_pred             HHHHHHhh-CCCCceecCccccccCCCchHHHHHHHHHHHHhcCCCe
Confidence            6643 232 22357888843321      134456666666777665

>PRK12999 pyruvate carboxylase; Reviewed

Probab=87.90  E-value=44  Score=39.46  Aligned_cols=209  Identities=13%  Similarity=0.096  Sum_probs=122.5

Q ss_pred             HHHHHHHHhhhhc--CCCEEEEEe----c---CCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691           36 DKMVVDMGKANAS--GADLVEIRL----D---GLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (420)
Q Consensus        36 ~e~~~~~~~~~~~--~~D~vElRl----D---~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (420)
                      ++++.-++.....  |.+.+|.=-    |   .+...++.+.++.+++.. +.|+-.-+|..+==|..+.++.-..+.++
T Consensus       555 ~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~  634 (1146)
T PRK12999        555 KDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVR  634 (1146)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHHHH
Confidence            3344444444445  899999753    2   122335667787777654 56666667755443443445556666799


Q ss_pred             HHHHhCCcEEEEEccccc-chhHHHh-hcCCCC--cEEEEEcc----cCCCCC-CHHHHHHHHHHHHHcCCCEEEEEeec
Q 014691          106 LAMELGADYIDVELQVAR-EFNDSIR-GKKPEK--CKVIVSSH----NYQYTP-SVEDLSNLVARIQASGADIVKFATTA  176 (420)
Q Consensus       106 ~~~~~~~d~iDiEl~~~~-~~~~~l~-~~~~~~--~kiI~S~H----~f~~tP-~~~el~~~~~~~~~~gaDivKia~~~  176 (420)
                      .+.+.|+|++-|=...++ +.++... ..+..+  ..+-+||-    |-..+. +.+.+.+..+++.+.|||++-|+=|+
T Consensus       635 ~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~  714 (1146)
T PRK12999        635 EAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMA  714 (1146)
T ss_pred             HHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence            999999999887443322 1111111 122223  44566665    322322 45678899999999999999998777


Q ss_pred             --CCHHHHHHHHHHhccC-CCCEEEE--ecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691          177 --LDITDVARVFQITVHS-QVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (420)
Q Consensus       177 --~s~~D~~~ll~~~~~~-~~p~I~~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~  245 (420)
                        -++.++..+.+.++.. +.|+=..  +.--++..+=+.+-.-|....=+++..- .--.||++++++...++
T Consensus       715 G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~av~gl-g~~tgn~~le~vv~~L~  787 (1146)
T PRK12999        715 GLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVAVASM-SGLTSQPSLNSIVAALE  787 (1146)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhCCCEEEecchhh-cCCcCCHHHHHHHHHHH
Confidence              4688888888876543 5665433  3333344444444445554444444331 23467877777655544

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

Probab=87.89  E-value=28  Score=33.91  Aligned_cols=204  Identities=16%  Similarity=0.118  Sum_probs=112.6

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc--hhHHHHHHhhC--CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNP--RENIKTLIKES--PVPTLFTYRPIWEGGQYDGDENERVDVLRLAME  109 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~--~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~  109 (420)
                      +.++.+.-++...+.|+|.||+   -++...+  .+.++.+.+..  +.+++.-.|....+-. ...+    .-++.+++
T Consensus        18 s~e~k~~i~~~L~~~Gv~~IE~---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~----~~~~~a~~   89 (273)
T cd07941          18 SVEDKLRIARKLDELGVDYIEG---GWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVK-AEED----PNLQALLE   89 (273)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEe---cCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCC-ccch----HHHHHHHh
Confidence            3444444455555679999998   2222222  22344443322  4566666676444322 1111    34667788


Q ss_pred             hCCcEEEEEccccc------------chh---HHHh-hcCCCCcEEEEEc-ccCCCCC-CHHHHHHHHHHHHHcCCCEEE
Q 014691          110 LGADYIDVELQVAR------------EFN---DSIR-GKKPEKCKVIVSS-HNYQYTP-SVEDLSNLVARIQASGADIVK  171 (420)
Q Consensus       110 ~~~d~iDiEl~~~~------------~~~---~~l~-~~~~~~~kiI~S~-H~f~~tP-~~~el~~~~~~~~~~gaDivK  171 (420)
                      .|++.|.+-....+            +.+   .++. ..+..+.++.++. |.++.+. +.+.+.+.++++.+.|+|.+-
T Consensus        90 ~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~  169 (273)
T cd07941          90 AGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLV  169 (273)
T ss_pred             CCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEE
Confidence            89999888543211            111   1222 2345567776643 3334433 456688999999999999988


Q ss_pred             EEeec--CCHHHHHHHHHHhccC--CCCEEEEecCCcc--hhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691          172 FATTA--LDITDVARVFQITVHS--QVPIIGLVMGERG--LISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (420)
Q Consensus       172 ia~~~--~s~~D~~~ll~~~~~~--~~p~I~~~MG~~G--~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~  245 (420)
                      ++=+.  -++.++.++++.+.+.  +.|+=..+=-..|  ...=+.+-.-|..+.=+++..- .--.|+.+++++...++
T Consensus       170 l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~Gl-GeraGn~~~e~~~~~L~  248 (273)
T cd07941         170 LCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTINGY-GERCGNANLCSIIPNLQ  248 (273)
T ss_pred             EecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEecccc-ccccccccHHHHHHHHH
Confidence            88443  5788888888776542  2554433322222  2222333333544333444331 23478999988887775


Q ss_pred             c
Q 014691          246 F  246 (420)
Q Consensus       246 ~  246 (420)
                      .
T Consensus       249 ~  249 (273)
T cd07941         249 L  249 (273)
T ss_pred             h
Confidence            3

Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in

>PRK07589 ornithine cyclodeaminase; Validated

Probab=87.81  E-value=0.7  Score=46.85  Aligned_cols=39  Identities=18%  Similarity=0.256  Sum_probs=33.2

Q ss_pred             CCEEEEEccchHHHHHHHHHHhC-CC-eEEEEeCChhhhhc
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYENLQR  419 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~-g~-~i~v~nR~~~ka~~  419 (420)
                      -++++|||+|.-|+.-+.++... .. +|+|+||+.+++++
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~  169 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAK  169 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHH
Confidence            36899999999999988877654 56 99999999999875

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=87.67  E-value=0.65  Score=49.39  Aligned_cols=33  Identities=39%  Similarity=0.511  Sum_probs=30.2

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..|+|||+|++|-++++.+++.|++|.|+.++.
T Consensus        62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~   94 (506)
T PRK06481         62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP   94 (506)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            469999999999999999999999999998864

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=87.60  E-value=5.1  Score=40.16  Aligned_cols=88  Identities=15%  Similarity=0.195  Sum_probs=60.4

Q ss_pred             CcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCC------Cc----hhHHHHHHhhCCCcEEEEeccCCCCCC
Q 014691           23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNF------NP----RENIKTLIKESPVPTLFTYRPIWEGGQ   92 (420)
Q Consensus        23 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~------~~----~~~l~~l~~~~~~PiI~T~R~~~eGG~   92 (420)
                      .| +.+.|.+.+.++..+-++.+.+.|+|++|+=+-+....      +.    .+.++.+++..++|+++-++..     
T Consensus       100 ~p-vi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~-----  173 (325)
T cd04739         100 IP-VIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPF-----  173 (325)
T ss_pred             Ce-EEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCC-----
Confidence            45 45789999999888777777777999999998764311      11    1234445555689999998731     


Q ss_pred             CCCCHHHHHHHHHHHHHhCCcEEEEEcc
Q 014691           93 YDGDENERVDVLRLAMELGADYIDVELQ  120 (420)
Q Consensus        93 ~~~~~~~~~~ll~~~~~~~~d~iDiEl~  120 (420)
                      +  +  +..++.+.+.+.|+|.|.+--.
T Consensus       174 ~--~--~~~~~a~~l~~~Gadgi~~~nt  197 (325)
T cd04739         174 F--S--ALAHMAKQLDAAGADGLVLFNR  197 (325)
T ss_pred             c--c--CHHHHHHHHHHcCCCeEEEEcC
Confidence            1  1  3455667777889999987544

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily

Probab=87.55  E-value=20  Score=36.08  Aligned_cols=176  Identities=15%  Similarity=0.195  Sum_probs=101.7

Q ss_pred             CCCCcEEEEeecCC-CHHHHHHHHHhhhhcCCCEEEEEecCCCC----C-CchhHHHHHHhhC--CCcEEEEeccCCCCC
Q 014691           20 RKNPTLICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKN----F-NPRENIKTLIKES--PVPTLFTYRPIWEGG   91 (420)
Q Consensus        20 ~~~~~~icv~l~~~-~~~e~~~~~~~~~~~~~D~vElRlD~l~~----~-~~~~~l~~l~~~~--~~PiI~T~R~~~eGG   91 (420)
                      .++.|.-+...... +.+++.++++++.+.|.+.+++.+..-..    . .+.+.++.+++..  +.++.+-.    .+|
T Consensus       124 ~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDa----N~~  199 (357)
T cd03316         124 RDRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDA----NGR  199 (357)
T ss_pred             CCceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEEC----CCC
Confidence            44444433222233 68999999998888999999999864210    0 1234466666544  45555432    222


Q ss_pred             CCCCCHHHHHHHHHHHHHhCCcEEEEEcccccch---hHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCC
Q 014691           92 QYDGDENERVDVLRLAMELGADYIDVELQVAREF---NDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGAD  168 (420)
Q Consensus        92 ~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~---~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaD  168 (420)
                       |  +.++-+++++..-+.+++|+  |--...+.   .+.+..  ..++.|++--+.+    +.+++.+.++   .-.+|
T Consensus       200 -~--~~~~a~~~~~~l~~~~i~~i--EqP~~~~~~~~~~~l~~--~~~ipi~~dE~~~----~~~~~~~~i~---~~~~d  265 (357)
T cd03316         200 -W--DLAEAIRLARALEEYDLFWF--EEPVPPDDLEGLARLRQ--ATSVPIAAGENLY----TRWEFRDLLE---AGAVD  265 (357)
T ss_pred             -C--CHHHHHHHHHHhCccCCCeE--cCCCCccCHHHHHHHHH--hCCCCEEeccccc----cHHHHHHHHH---hCCCC
Confidence             4  45566677777666777775  43332222   223332  2456666533221    2234443333   23588


Q ss_pred             EEEEEeec-CCHHHHHHHHHHhccCCCCEEEEecCCcchhhhhhcccc
Q 014691          169 IVKFATTA-LDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKF  215 (420)
Q Consensus       169 ivKia~~~-~s~~D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~  215 (420)
                      ++-+-.+- -......++.++....++++..-+|++ | ++...+-.+
T Consensus       266 ~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~~~-~-i~~aa~~hl  311 (357)
T cd03316         266 IIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGAGG-P-IGLAASLHL  311 (357)
T ss_pred             EEecCccccCCHHHHHHHHHHHHHcCCeEeccCCCC-H-HHHHHHHHH
Confidence            88776554 458899999988888899988888865 4 444443333

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=87.55  E-value=0.67  Score=46.25  Aligned_cols=40  Identities=23%  Similarity=0.243  Sum_probs=28.8

Q ss_pred             CCEEEEEccchHHHHHHHHHHh-CCC-eEEEEeCChhhhhcC
Q 014691          381 GKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYENLQRL  420 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~-~g~-~i~v~nR~~~ka~~L  420 (420)
                      .+++.|||+|.-|+.-+.++.. .+. +|+|+||++++++++
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~  169 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAF  169 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHH
Confidence            3689999999999998888765 567 999999999998753

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=87.51  E-value=0.7  Score=45.75  Aligned_cols=36  Identities=31%  Similarity=0.457  Sum_probs=32.0

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      .+++.-|+|+|+||+|.-++--|..-|| +|.|++-+
T Consensus        71 kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfd  107 (430)
T KOG2018|consen   71 KLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFD  107 (430)
T ss_pred             HhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechh
Confidence            3567789999999999999999999999 99998754

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=87.49  E-value=0.9  Score=47.10  Aligned_cols=38  Identities=26%  Similarity=0.334  Sum_probs=35.0

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+.||++.|||.|..|+.++..+..+|++|..++|+.
T Consensus       147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~  184 (409)
T PRK11790        147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIED  184 (409)
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            45789999999999999999999999999999999864

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=87.46  E-value=23  Score=35.42  Aligned_cols=93  Identities=12%  Similarity=0.129  Sum_probs=64.1

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCC------------Cc---hhHHHHHHhhCCCcEEEEeccCCCC
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNF------------NP---RENIKTLIKESPVPTLFTYRPIWEG   90 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~------------~~---~~~l~~l~~~~~~PiI~T~R~~~eG   90 (420)
                      +.+-|.+.+.+++.+-++.+...|+|.||+=..+=...            ++   .+.++.+++..+.|+-+-+|...+-
T Consensus        57 ~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~  136 (318)
T TIGR00742        57 VALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP  136 (318)
T ss_pred             EEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            55889999999999888887777999999988763210            11   1223344445678998889964321


Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCcEEEEEccc
Q 014691           91 GQYDGDENERVDVLRLAMELGADYIDVELQV  121 (420)
Q Consensus        91 G~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~  121 (420)
                      .   .+.+...++.+.+.+.|++.|+|--..
T Consensus       137 ~---~~~~~~~~~~~~l~~~G~~~itvHgRt  164 (318)
T TIGR00742       137 L---DSYEFLCDFVEIVSGKGCQNFIVHARK  164 (318)
T ss_pred             c---chHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            1   122455677888888999999987654

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK11858 aksA trans-homoaconitate synthase; Reviewed

Probab=87.42  E-value=37  Score=34.79  Aligned_cols=193  Identities=16%  Similarity=0.183  Sum_probs=110.5

Q ss_pred             HHHHHHHHHhhhhcCCCEEEEEecCCCCCCch--hHHHHHHhhCCCcEEEE-eccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691           35 VDKMVVDMGKANASGADLVEIRLDGLKNFNPR--ENIKTLIKESPVPTLFT-YRPIWEGGQYDGDENERVDVLRLAMELG  111 (420)
Q Consensus        35 ~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~--~~l~~l~~~~~~PiI~T-~R~~~eGG~~~~~~~~~~~ll~~~~~~~  111 (420)
                      .++.++-++...+.|+|.||.=   ++...+.  +.++.+.+....+.+.+ .|..             .+-++.+.+.|
T Consensus        25 ~e~k~~ia~~L~~~GV~~IE~G---~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~-------------~~di~~a~~~g   88 (378)
T PRK11858         25 NEEKLAIARMLDEIGVDQIEAG---FPAVSEDEKEAIKAIAKLGLNASILALNRAV-------------KSDIDASIDCG   88 (378)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEe---CCCcChHHHHHHHHHHhcCCCeEEEEEcccC-------------HHHHHHHHhCC
Confidence            4444554555556799999974   3332322  34555543222233333 4421             12266777889


Q ss_pred             CcEEEEEcccccc---------------hhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEee
Q 014691          112 ADYIDVELQVARE---------------FNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT  175 (420)
Q Consensus       112 ~d~iDiEl~~~~~---------------~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~  175 (420)
                      +++|.+-+..++-               ...+.. .++..+..|.++.-+...+ +.+.+.+.++.+.+.|+|.+-++=+
T Consensus        89 ~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~-~~~~l~~~~~~~~~~Ga~~I~l~DT  167 (378)
T PRK11858         89 VDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRT-DLDFLIEFAKAAEEAGADRVRFCDT  167 (378)
T ss_pred             cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCC-CHHHHHHHHHHHHhCCCCEEEEecc
Confidence            9999987655431               111122 2345577787776554444 4678999999999999999888854


Q ss_pred             c--CCHHHHHHHHHHhcc-CCCCEEEEecCCcchhh--hhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691          176 A--LDITDVARVFQITVH-SQVPIIGLVMGERGLIS--RILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (420)
Q Consensus       176 ~--~s~~D~~~ll~~~~~-~~~p~I~~~MG~~G~~S--Ri~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~  245 (420)
                      .  -++.++.++++.+.. .+.|+-..+=-..|..+  =+..-.-|....=+++..- .-..|..+++++.-.++
T Consensus       168 ~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~Gl-GeraGNa~lE~vv~~L~  241 (378)
T PRK11858        168 VGILDPFTMYELVKELVEAVDIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGL-GERAGNAALEEVVMALK  241 (378)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccc-cccccCccHHHHHHHHH
Confidence            4  468888888876543 35666555444444332  2222223433333333321 13478888877665554

>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R

Probab=87.41  E-value=12  Score=38.15  Aligned_cols=121  Identities=15%  Similarity=0.112  Sum_probs=76.0

Q ss_pred             HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEE-EEEcccc------cchhHHH----hh-cCCC
Q 014691           68 NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYI-DVELQVA------REFNDSI----RG-KKPE  135 (420)
Q Consensus        68 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~i-DiEl~~~------~~~~~~l----~~-~~~~  135 (420)
                      -+++++...+.|++.|+=.+ . |.   +.++..++....+.-|+|.| |-|.-.+      ++.++..    .. ....
T Consensus       116 g~R~~lgv~~rPl~~tiiKP-~-GL---~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eT  190 (364)
T cd08210         116 GLRALLGIPERPLLCSALKP-Q-GL---SAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAET  190 (364)
T ss_pred             HHHHHhCCCCCceEEEEecc-c-cC---CHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhc
Confidence            34555555689999997655 4 64   77888888888888889999 6665322      1111111    11 1122


Q ss_pred             CcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCC-CCEEEE
Q 014691          136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ-VPIIGL  199 (420)
Q Consensus       136 ~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~-~p~I~~  199 (420)
                      +.+++.....   |-+.+|+.+..+.+++.|++.+-+........-+..+   ..+.. .|+.+.
T Consensus       191 G~~~~y~~Ni---ta~~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~~~l---~~~~~~l~i~aH  249 (364)
T cd08210         191 GGRTLYAPNV---TGPPTQLLERARFAKEAGAGGVLIAPGLTGLDTFREL---AEDFDFLPILAH  249 (364)
T ss_pred             CCcceEEEec---CCCHHHHHHHHHHHHHcCCCEEEeecccchHHHHHHH---HhcCCCcEEEEc
Confidence            3344433322   2235699999999999999999999887776643333   23344 566555

rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.

>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli

Probab=87.40  E-value=2.2  Score=43.02  Aligned_cols=62  Identities=23%  Similarity=0.371  Sum_probs=38.5

Q ss_pred             CCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhcc-----CCCCEEE
Q 014691          135 EKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVH-----SQVPIIG  198 (420)
Q Consensus       135 ~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~-----~~~p~I~  198 (420)
                      ++..|.+-.=.-..|-+.+...+.+.++.+.|||||++|+.  +.++...+-+..+.     .++|++|
T Consensus        13 G~~PI~VQSMt~t~t~Dv~atv~QI~~L~~aGceivRvavp--~~~~a~al~~I~~~l~~~g~~iPlVA   79 (359)
T PF04551_consen   13 GGAPISVQSMTNTDTRDVEATVAQIKRLEEAGCEIVRVAVP--DMEAAEALKEIKKRLRALGSPIPLVA   79 (359)
T ss_dssp             TTS--EEEEE--S-TT-HHHHHHHHHHHHHCT-SEEEEEE---SHHHHHHHHHHHHHHHCTT-SS-EEE
T ss_pred             CCCCEEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHHHHHHHHhhccCCCCCCeee
Confidence            34444443332344667777888999999999999999998  67777666666555     6889887

It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=87.39  E-value=1.7  Score=41.84  Aligned_cols=52  Identities=29%  Similarity=0.321  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeE-EEEe
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARV-VIAN  411 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i-~v~n  411 (420)
                      ++|...+++..+...+      ..+++|++++|-|.|.+|+.++..|.+.|++| .|.+
T Consensus        11 g~GV~~~~~~~~~~~~------~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD   63 (244)
T PF00208_consen   11 GYGVAYAIEAALEHLG------GDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSD   63 (244)
T ss_dssp             HHHHHHHHHHHHHHTT------CHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHcC------CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEec
Confidence            5677777766553211      13588999999999999999999999999854 4433

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>TIGR01496 DHPS dihydropteroate synthase

Probab=87.38  E-value=24  Score=34.20  Aligned_cols=139  Identities=22%  Similarity=0.274  Sum_probs=78.7

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecCC----CCCCchhH---HHHHH---h-hCCCcEEEEeccCCCCCCCCCCHHHHH
Q 014691           33 ESVDKMVVDMGKANASGADLVEIRLDGL----KNFNPREN---IKTLI---K-ESPVPTLFTYRPIWEGGQYDGDENERV  101 (420)
Q Consensus        33 ~~~~e~~~~~~~~~~~~~D~vElRlD~l----~~~~~~~~---l~~l~---~-~~~~PiI~T~R~~~eGG~~~~~~~~~~  101 (420)
                      .+.++++..+++..+.|||+|.+=...-    ...++.++   +..++   + ..+.|+  .+-|            .+-
T Consensus        20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~pl--siDT------------~~~   85 (257)
T TIGR01496        20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPI--SVDT------------YRA   85 (257)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeE--EEeC------------CCH
Confidence            4678889988888899999999932211    11122222   33222   2 236665  4433            123


Q ss_pred             HHHHHHHHhCCcEE-EEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCH---------------HHHHHHHHHHHHc
Q 014691          102 DVLRLAMELGADYI-DVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSV---------------EDLSNLVARIQAS  165 (420)
Q Consensus       102 ~ll~~~~~~~~d~i-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~---------------~el~~~~~~~~~~  165 (420)
                      +.++.|++.|+++| |+.....++..+.+   ++.+..+|+ .|+- +.|..               +.+.+.++++.+.
T Consensus        86 ~vi~~al~~G~~iINsis~~~~~~~~~l~---~~~~~~vV~-m~~~-g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (257)
T TIGR01496        86 EVARAALEAGADIINDVSGGQDPAMLEVA---AEYGVPLVL-MHMR-GTPRTMQENPHYEDVVEEVLRFLEARAEELVAA  160 (257)
T ss_pred             HHHHHHHHcCCCEEEECCCCCCchhHHHH---HHcCCcEEE-EeCC-CCCcccccCCCcccHHHHHHHHHHHHHHHHHHc
Confidence            57788888898876 34333233344332   235778888 4532 34422               2255667778888


Q ss_pred             CCCEEEEEeec-----CCHHHHHHHHHHhc
Q 014691          166 GADIVKFATTA-----LDITDVARVFQITV  190 (420)
Q Consensus       166 gaDivKia~~~-----~s~~D~~~ll~~~~  190 (420)
                      |-+.-++..=|     ++.+++..+++.+.
T Consensus       161 Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~  190 (257)
T TIGR01496       161 GVAAERIILDPGIGFGKTPEHNLELLKHLE  190 (257)
T ss_pred             CCCHHHEEEECCCCcccCHHHHHHHHHHHH
Confidence            87544554433     46777777766544

This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=87.31  E-value=1  Score=45.60  Aligned_cols=39  Identities=26%  Similarity=0.480  Sum_probs=34.1

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|.+++|+|+|++|.+++..+...|+ +|+.++++.+|.+
T Consensus       185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~  224 (368)
T TIGR02818       185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFE  224 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            47899999999999999998899999 8999988877654

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=87.27  E-value=0.93  Score=44.53  Aligned_cols=39  Identities=28%  Similarity=0.416  Sum_probs=33.7

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+.+++|+|+|++|++++..+...|++|+++.++.++.+
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~  200 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRE  200 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            467899999999999998888899999999999877643

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=87.22  E-value=0.78  Score=45.99  Aligned_cols=39  Identities=18%  Similarity=0.169  Sum_probs=32.7

Q ss_pred             CCEEEEEccchHHHHHHHHHHhC-CC-eEEEEeCChhhhhc
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYENLQR  419 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~-g~-~i~v~nR~~~ka~~  419 (420)
                      .+++.|||+|..|++-+.++... .. +|+|+||+.++++.
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~  168 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREK  168 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHH
Confidence            47899999999999977777543 45 89999999999864

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides

Probab=87.21  E-value=33  Score=33.95  Aligned_cols=173  Identities=18%  Similarity=0.213  Sum_probs=106.0

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVL  104 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (420)
                      ++..+...+.+++.+++++..+.|.+.+.+.+..-.+ .+.+.++.+++.. +.++.+-.+     +.|+  .++-.+++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~~~~-~d~~~v~~lr~~~g~~~l~vD~n-----~~~~--~~~A~~~~  197 (316)
T cd03319         126 TDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGGDLE-DDIERIRAIREAAPDARLRVDAN-----QGWT--PEEAVELL  197 (316)
T ss_pred             eEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCChh-hHHHHHHHHHHhCCCCeEEEeCC-----CCcC--HHHHHHHH
Confidence            4445667889999999998888899999999853211 1234566666544 355555544     2243  45667777


Q ss_pred             HHHHHhCCcEEEEEcccccc---hhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec-CCHH
Q 014691          105 RLAMELGADYIDVELQVARE---FNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA-LDIT  180 (420)
Q Consensus       105 ~~~~~~~~d~iDiEl~~~~~---~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~-~s~~  180 (420)
                      +...+.+++|+  |--...+   ..+++..  ...+.|+..=..+    +.+++.+.   +..-++|++-+=.+- -...
T Consensus       198 ~~l~~~~l~~i--EeP~~~~d~~~~~~L~~--~~~ipIa~~E~~~----~~~~~~~~---~~~~~~d~v~~~~~~~GGi~  266 (316)
T cd03319         198 RELAELGVELI--EQPVPAGDDDGLAYLRD--KSPLPIMADESCF----SAADAARL---AGGGAYDGINIKLMKTGGLT  266 (316)
T ss_pred             HHHHhcCCCEE--ECCCCCCCHHHHHHHHh--cCCCCEEEeCCCC----CHHHHHHH---HhcCCCCEEEEeccccCCHH
Confidence            77778888887  4333222   2334432  3456777653322    22333332   333568877654444 3688


Q ss_pred             HHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCc
Q 014691          181 DVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGF  218 (420)
Q Consensus       181 D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~  218 (420)
                      +..++.++....+++++.-+|-+.+ +++..+-.+.+.
T Consensus       267 ~~~~~~~~a~~~gi~~~~~~~~~~~-i~~~a~~hl~a~  303 (316)
T cd03319         267 EALRIADLARAAGLKVMVGCMVESS-LSIAAAAHLAAA  303 (316)
T ss_pred             HHHHHHHHHHHcCCCEEEECchhhH-HHHHHHHHHHhh
Confidence            8889888888889998887776444 555555555444

The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>PRK09414 glutamate dehydrogenase; Provisional

Probab=87.17  E-value=1.5  Score=45.84  Aligned_cols=51  Identities=29%  Similarity=0.375  Sum_probs=40.9

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEE-e
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIA-N  411 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~-n  411 (420)
                      +.|.+.+++..+...       +.+++|++|+|.|-|.+|+.++..|.+.|++|+.+ +
T Consensus       212 g~Gv~~~~~~~~~~~-------~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD  263 (445)
T PRK09414        212 GYGLVYFAEEMLKAR-------GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD  263 (445)
T ss_pred             cHHHHHHHHHHHHhc-------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence            677777777665431       35789999999999999999999999999976544 5

>TIGR01496 DHPS dihydropteroate synthase

Probab=87.08  E-value=2.5  Score=41.02  Aligned_cols=108  Identities=21%  Similarity=0.225  Sum_probs=61.8

Q ss_pred             EEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEE--Ecccc-------c-c--hhHHHhhcCCCCcEEEEEcccCCCC
Q 014691           82 FTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDV--ELQVA-------R-E--FNDSIRGKKPEKCKVIVSSHNYQYT  149 (420)
Q Consensus        82 ~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDi--El~~~-------~-~--~~~~l~~~~~~~~kiI~S~H~f~~t  149 (420)
                      +|=-|-.+||.+. +.++-.+..+..++.|+++|||  |...+       + +  .+..+...-+..+.+.+|.|.    
T Consensus         8 ~tpdSF~dg~~~~-~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT----   82 (257)
T TIGR01496         8 VTPDSFSDGGRFL-SVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDT----   82 (257)
T ss_pred             CCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeC----
Confidence            3445668899875 4445555566667889999999  32211       1 1  122222211223356678884    


Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEEecC
Q 014691          150 PSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMG  202 (420)
Q Consensus       150 P~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~~MG  202 (420)
                      ++.+.+    +.+.+.|+|++==+..-+ .+   +++.+.++.+.|+|.|.+.
T Consensus        83 ~~~~vi----~~al~~G~~iINsis~~~-~~---~~~~l~~~~~~~vV~m~~~  127 (257)
T TIGR01496        83 YRAEVA----RAALEAGADIINDVSGGQ-DP---AMLEVAAEYGVPLVLMHMR  127 (257)
T ss_pred             CCHHHH----HHHHHcCCCEEEECCCCC-Cc---hhHHHHHHcCCcEEEEeCC
Confidence            344344    334445999876554433 23   3455566778899998774

This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=86.99  E-value=27  Score=33.31  Aligned_cols=87  Identities=24%  Similarity=0.320  Sum_probs=57.7

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCC------C-----CchhHHHHHH---hhCCCcEEEEeccCCCC
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN------F-----NPRENIKTLI---KESPVPTLFTYRPIWEG   90 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~------~-----~~~~~l~~l~---~~~~~PiI~T~R~~~eG   90 (420)
                      -+.+-|.+.+.+++.+-++.+.. .+|.||+=+-+=..      .     .+.+.+..++   ++.++|+.+-+|..   
T Consensus        74 p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g---  149 (233)
T cd02911          74 LVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAG---  149 (233)
T ss_pred             eEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCC---
Confidence            35678999999999887777644 57999998775211      0     1112233222   23578988888863   


Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCcEEEEEcc
Q 014691           91 GQYDGDENERVDVLRLAMELGADYIDVELQ  120 (420)
Q Consensus        91 G~~~~~~~~~~~ll~~~~~~~~d~iDiEl~  120 (420)
                        ++   ++..++.+.+.+.|+|+|.+.-.
T Consensus       150 --~~---~~~~~la~~l~~aG~d~ihv~~~  174 (233)
T cd02911         150 --VD---VDDEELARLIEKAGADIIHVDAM  174 (233)
T ss_pred             --cC---cCHHHHHHHHHHhCCCEEEECcC
Confidence              22   34566777788899999988643

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=86.74  E-value=0.7  Score=53.14  Aligned_cols=40  Identities=15%  Similarity=0.211  Sum_probs=34.2

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCC-Ce-------------EEEEeCChhhhhc
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKG-AR-------------VVIANRTYENLQR  419 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g-~~-------------i~v~nR~~~ka~~  419 (420)
                      +.|+|+|||||.+|+.++..|.+.. ++             |+|++++.++|++
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~  621 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKE  621 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHH
Confidence            4679999999999999999998754 24             9999999988875

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=86.68  E-value=28  Score=33.00  Aligned_cols=191  Identities=16%  Similarity=0.173  Sum_probs=99.2

Q ss_pred             CCCHHHHHHHHHhhhhcCCC---EEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHH
Q 014691           32 GESVDKMVVDMGKANASGAD---LVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAM  108 (420)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~~D---~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~  108 (420)
                      ..++.++...++   ..|+|   ++.+-.|........+.++.+.+..++|+++.      ||-...++  -    +..+
T Consensus        26 ~~d~~~~a~~~~---~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~------GGI~s~~d--~----~~~l   90 (243)
T cd04731          26 AGDPVELAKRYN---EQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVG------GGIRSLED--A----RRLL   90 (243)
T ss_pred             CCCHHHHHHHHH---HCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEe------CCCCCHHH--H----HHHH
Confidence            346666665554   55888   44443332221122345666767778999965      56543222  2    2223


Q ss_pred             HhCCcEEEEEccc--ccchhHHHhhcCCCCcEEEEEcccC---------------CCCCCHHHHHHHHHHHHHcCCCEEE
Q 014691          109 ELGADYIDVELQV--AREFNDSIRGKKPEKCKVIVSSHNY---------------QYTPSVEDLSNLVARIQASGADIVK  171 (420)
Q Consensus       109 ~~~~d~iDiEl~~--~~~~~~~l~~~~~~~~kiI~S~H~f---------------~~tP~~~el~~~~~~~~~~gaDivK  171 (420)
                      ..|++.|.+=...  ..+++.++... -+.-++++|.-..               +.+  ..+..+..+.+.+.|+|.+=
T Consensus        91 ~~G~~~v~ig~~~~~~p~~~~~i~~~-~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~--~~~~~~~~~~l~~~G~d~i~  167 (243)
T cd04731          91 RAGADKVSINSAAVENPELIREIAKR-FGSQCVVVSIDAKRRGDGGYEVYTHGGRKPT--GLDAVEWAKEVEELGAGEIL  167 (243)
T ss_pred             HcCCceEEECchhhhChHHHHHHHHH-cCCCCEEEEEEeeecCCCceEEEEcCCceec--CCCHHHHHHHHHHCCCCEEE
Confidence            3588988875433  34455555432 1223577775311               112  23466777888889999765


Q ss_pred             EEeecCC----HHHHHHHHHHhccCCCCEEEEe-cCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691          172 FATTALD----ITDVARVFQITVHSQVPIIGLV-MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (420)
Q Consensus       172 ia~~~~s----~~D~~~ll~~~~~~~~p~I~~~-MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~  245 (420)
                      +-....+    .-+...+.++....+.|+|+.+ +...-.+-+++.. -|  ...+.++.  +--.|++++.++++.++
T Consensus       168 v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~-~g--~dgv~vg~--al~~~~~~~~~~~~~~~  241 (243)
T cd04731         168 LTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEE-GG--ADAALAAS--IFHFGEYTIAELKEYLA  241 (243)
T ss_pred             EeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHh-CC--CCEEEEeH--HHHcCCCCHHHHHHHHh
Confidence            5322221    1122222333334578987753 3333455555542 12  12233332  13478899988877654

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=86.68  E-value=1  Score=45.26  Aligned_cols=38  Identities=34%  Similarity=0.458  Sum_probs=35.3

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .++.||++-|||.|..|++++.-++-+|++|..++|..
T Consensus       142 ~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~  179 (324)
T COG1052         142 FDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSP  179 (324)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCC
Confidence            56889999999999999999999998888999999986

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=86.68  E-value=1.1  Score=45.28  Aligned_cols=39  Identities=36%  Similarity=0.564  Sum_probs=34.1

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++|+|.|+|++|.+++..+...|+ +|++++++++|.+
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~  230 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLA  230 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHH
Confidence            47899999999999999998889999 7999998877754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=86.66  E-value=0.83  Score=50.95  Aligned_cols=38  Identities=32%  Similarity=0.412  Sum_probs=34.3

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      -++|.|||||-+|..+++.++..|++|++++++.+..+
T Consensus       335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~  372 (737)
T TIGR02441       335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLD  372 (737)
T ss_pred             ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHH
Confidence            36899999999999999999999999999999987654

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=86.57  E-value=1  Score=44.63  Aligned_cols=39  Identities=31%  Similarity=0.359  Sum_probs=33.4

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++++|.|+ |++|.+++..+..+|++|+.+.++.++.+
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~  190 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVD  190 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            4789999997 99999999888899998888888877654

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PLN02712 arogenate dehydrogenase

Probab=86.50  E-value=1.2  Score=49.15  Aligned_cols=39  Identities=21%  Similarity=0.219  Sum_probs=34.8

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      ..++++++.|||.|.+|++++.+|...|.+|++++|+..
T Consensus       365 ~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~  403 (667)
T PLN02712        365 NDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDY  403 (667)
T ss_pred             CCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChH
Confidence            445678999999999999999999999999999999854

>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder

Probab=86.45  E-value=0.55  Score=44.04  Aligned_cols=111  Identities=23%  Similarity=0.253  Sum_probs=63.6

Q ss_pred             EEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccc---------ccchhHHHh----hcCCCCcEEEEEcccC
Q 014691           80 TLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQV---------AREFNDSIR----GKKPEKCKVIVSSHNY  146 (420)
Q Consensus        80 iI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~---------~~~~~~~l~----~~~~~~~kiI~S~H~f  146 (420)
                      +.+|-|+...||.+. ++++..+-.+..++.|+++|||=...         .++-++++.    ..+.....+.+|.=  
T Consensus         2 lNvt~dSf~~g~~~~-~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSID--   78 (210)
T PF00809_consen    2 LNVTPDSFSDGGRKF-SEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSID--   78 (210)
T ss_dssp             EEESCCTTTTTTCHH-HHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEE--
T ss_pred             EEecCCCCcccCccc-CHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEE--
Confidence            457888888988754 33334444666678899999995432         122222222    11111235666764  


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEEecC
Q 014691          147 QYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMG  202 (420)
Q Consensus       147 ~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~~MG  202 (420)
                        |+..+.+..-+    +.|++++   .-..+.++...++.+.++.+.|+|+|.|.
T Consensus        79 --T~~~~v~~~aL----~~g~~~i---nd~~~~~~~~~~~~l~a~~~~~vV~m~~~  125 (210)
T PF00809_consen   79 --TFNPEVAEAAL----KAGADII---NDISGFEDDPEMLPLAAEYGAPVVLMHSD  125 (210)
T ss_dssp             --ESSHHHHHHHH----HHTSSEE---EETTTTSSSTTHHHHHHHHTSEEEEESES
T ss_pred             --CCCHHHHHHHH----HcCcceE---EecccccccchhhhhhhcCCCEEEEEecc
Confidence              44444444433    3488764   33333333555677777778899999998

It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=86.42  E-value=1.2  Score=44.69  Aligned_cols=39  Identities=33%  Similarity=0.563  Sum_probs=33.9

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++++|.|+|+.|.+++..+...|+ +|+.++++.+|.+
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~  215 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLE  215 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            47899999999999999998889999 6999988877654

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PTZ00367 squalene epoxidase; Provisional

Probab=86.33  E-value=0.92  Score=49.06  Aligned_cols=34  Identities=24%  Similarity=0.398  Sum_probs=31.3

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ...|+|+|+|-+|.+++.+|++.|.+|.|+.|+.
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            3479999999999999999999999999999975

>PRK09284 thiamine biosynthesis protein ThiC; Provisional

Probab=86.32  E-value=3.4  Score=43.87  Aligned_cols=228  Identities=17%  Similarity=0.144  Sum_probs=124.5

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcE----EEEeccCCCCCCCCCCHHHHH
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT----LFTYRPIWEGGQYDGDENERV  101 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~Pi----I~T~R~~~eGG~~~~~~~~~~  101 (420)
                      |-.+-..+++++-++.+.-+...|||.|   .|+=..-+..+.-+.+++.+++||    ||-.=.+..|..-..+++..+
T Consensus       222 IGtS~~~s~ieeEveK~~~A~~~GADtv---MDLSTGgdi~~~R~~Il~~spvPvGTVPiYqA~~~~~~~~~~lt~e~~~  298 (607)
T PRK09284        222 IGNSAVTSSIEEEVEKMVWATRWGADTV---MDLSTGKNIHETREWILRNSPVPIGTVPIYQALEKVNGVAEDLTWEIFR  298 (607)
T ss_pred             ecCCCCCCCHHHHHHHHHHHHHcCCCEE---EecCCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHH
Confidence            3345566777888888888889999987   565333222222234566677665    222111233444567889999


Q ss_pred             HHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEc----------ccCCCCCCHHHHHHHHHHHHHcCCCEEE
Q 014691          102 DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSS----------HNYQYTPSVEDLSNLVARIQASGADIVK  171 (420)
Q Consensus       102 ~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~----------H~f~~tP~~~el~~~~~~~~~~gaDivK  171 (420)
                      +.++.-++.||||+.|--....+.+..+.    ++..=|+|.          |+.++.|-.+...++++-|+++..- +-
T Consensus       299 d~ieeQAeqGVDf~TIHaGv~~~~v~~~~----~R~tgIVSRGGSima~Wml~h~kENplYe~FD~ileI~k~YDVt-lS  373 (607)
T PRK09284        299 DTLIEQAEQGVDYFTIHAGVLLRYVPLTA----KRVTGIVSRGGSIMAKWCLAHHKENFLYTHFEEICEIMAAYDVS-FS  373 (607)
T ss_pred             HHHHHHHHhCCCEEEEChhhHHHHHHHHh----CcccCcccCCHHHHHHHHHHcCCcCcHHHHHHHHHHHHHHhCee-ee
Confidence            99999999999999997766555554442    222225564          6677888666666666666665410 01


Q ss_pred             E--EeecCCHH---HHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691          172 F--ATTALDIT---DVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (420)
Q Consensus       172 i--a~~~~s~~---D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~  246 (420)
                      +  ...|-+..   |-..+.++.          -   +|.+++..-.. |-    -.+-+    .||.+++.++..-.++
T Consensus       374 LGDGLRPG~iaDA~D~AQ~~EL~----------t---LGELt~rA~e~-gV----QVMIE----GPGHVPl~~I~~N~~l  431 (607)
T PRK09284        374 LGDGLRPGSIADANDEAQFAELE----------T---LGELTKIAWEH-DV----QVMIE----GPGHVPMHLIKENMDK  431 (607)
T ss_pred             ccCCcCCCccccCCcHHHHHHHH----------H---HHHHHHHHHHc-CC----eEEEE----CCCCCcHHHHHHHHHH
Confidence            1  12232222   222222221          1   34444443221 11    11223    3999999888776554


Q ss_pred             cccCCCceEEeeeccCccc------cccHHHHHHHHHHcCCCc
Q 014691          247 RQMGPDTKVFGIIGKPVGH------SKSPILYNEAFKSVGFNG  283 (420)
Q Consensus       247 ~~~~~~~~~~~v~G~pv~h------S~SP~ihn~~f~~~gl~~  283 (420)
                      ..-.-+---||++|-=++-      -.+..|=-+.....|-+.
T Consensus       432 qk~lc~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~Gad~  474 (607)
T PRK09284        432 QLEHCHEAPFYTLGPLTTDIAPGYDHITSAIGAAMIGWFGTAM  474 (607)
T ss_pred             HHHhhCCCCeeecCCcccccCCCchHHHHHHHHHHHHHcCCCe
Confidence            2211122357777732221      133345555555566554

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=86.31  E-value=0.74  Score=46.99  Aligned_cols=34  Identities=38%  Similarity=0.623  Sum_probs=31.3

Q ss_pred             EEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       383 ~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      .|.|+|||=+|.|.+|+|.+.|-+|.|+.|+...
T Consensus        47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~E   80 (509)
T KOG1298|consen   47 DVIIVGAGVAGSALAYALAKDGRRVHVIERDLSE   80 (509)
T ss_pred             cEEEECCcchHHHHHHHHhhCCcEEEEEeccccc
Confidence            4899999999999999999999999999998654

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=86.31  E-value=1.3  Score=44.69  Aligned_cols=39  Identities=33%  Similarity=0.533  Sum_probs=34.4

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|.+|||+|+|++|.+++..+..+|+ +|+.+.++.+|.+
T Consensus       186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~  225 (368)
T cd08300         186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFE  225 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence            47899999999999999999999999 7999998877654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PLN02444 HMP-P synthase

Probab=86.24  E-value=3.8  Score=43.65  Aligned_cols=134  Identities=19%  Similarity=0.166  Sum_probs=85.0

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcE----EEEeccCCCCCCCCCCHHHHH
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT----LFTYRPIWEGGQYDGDENERV  101 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~Pi----I~T~R~~~eGG~~~~~~~~~~  101 (420)
                      |-.+-...++++-++.++.+...|||.|   .|+=..-+..+.-+.+++.+++||    ||-.=.+..|..-..+++..+
T Consensus       227 IGtS~~~s~ie~EveK~~~A~~~GADTv---MDLSTGgdi~~iR~~Il~~spvPVGTVPIYqA~~~~~~~~~~lt~d~~~  303 (642)
T PLN02444        227 IGNSAVTSSIEEEVYKLQWATMWGADTV---MDLSTGRHIHETREWILRNSPVPVGTVPIYQALEKVDGIAENLTWEVFR  303 (642)
T ss_pred             ecCCCCCCCHHHHHHHHHHHHHcCCCeE---eeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHH
Confidence            3345566778888888888889999987   565332222222234556666665    222111223444567889999


Q ss_pred             HHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEc----------ccCCCCCCHHHHHHHHHHHHHcC
Q 014691          102 DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSS----------HNYQYTPSVEDLSNLVARIQASG  166 (420)
Q Consensus       102 ~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~----------H~f~~tP~~~el~~~~~~~~~~g  166 (420)
                      +.++.-++.||||+.|--....+.++.+.    ++..=|+|.          |+-++.|=.+...++++-++++.
T Consensus       304 d~ieeQaeqGVDfmTIH~Gv~~~~v~~~~----~R~tgIVSRGGSi~a~Wml~~~kENPlYe~FD~ileI~k~YD  374 (642)
T PLN02444        304 ETLIEQAEQGVDYFTIHAGVLLRYIPLTA----KRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQYD  374 (642)
T ss_pred             HHHHHHHHhCCCEEEEChhhHHHHHHHHh----CcccCceeCCcHHHHHHHHHcCCcCchHHHHHHHHHHHHHhC
Confidence            99999999999999997766555554442    222335564          66778886666666666666654

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=86.16  E-value=1.2  Score=44.80  Aligned_cols=38  Identities=24%  Similarity=0.304  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHH-hCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAK-AKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~-~~g~~i~v~nR~~  414 (420)
                      ..+.||++.|||-|.+|++++.-|. .+|++|..++|..
T Consensus       141 ~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~  179 (323)
T PRK15409        141 TDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRH  179 (323)
T ss_pred             CCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCC
Confidence            4578999999999999999999887 7899999888863

>PLN02306 hydroxypyruvate reductase

Probab=86.11  E-value=1.1  Score=46.00  Aligned_cols=38  Identities=26%  Similarity=0.230  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHH-hCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAK-AKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~-~~g~~i~v~nR~~  414 (420)
                      ..+.||++.|||.|..|++++.-|. .+|++|..++|+.
T Consensus       161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~  199 (386)
T PLN02306        161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCC
Confidence            4578999999999999999999875 7899999999875

>cd00739 DHPS DHPS subgroup of Pterin binding enzymes

Probab=86.10  E-value=22  Score=34.47  Aligned_cols=144  Identities=22%  Similarity=0.259  Sum_probs=82.1

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEE-----EecCCCCCCchhHHHH-------HHhhCCCcEEEEeccCCCCCCCCCCHHHH
Q 014691           33 ESVDKMVVDMGKANASGADLVEI-----RLDGLKNFNPRENIKT-------LIKESPVPTLFTYRPIWEGGQYDGDENER  100 (420)
Q Consensus        33 ~~~~e~~~~~~~~~~~~~D~vEl-----RlD~l~~~~~~~~l~~-------l~~~~~~PiI~T~R~~~eGG~~~~~~~~~  100 (420)
                      -+.++++.++.+..+.|||+|.+     |-+.- ..++.+++++       +....+.|+  .+-|            .+
T Consensus        21 ~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~-~i~~~~E~~rl~~~v~~i~~~~~~pl--SIDT------------~~   85 (257)
T cd00739          21 LSLDKAVAHAEKMIAEGADIIDIGGESTRPGAD-PVSVEEELERVIPVLEALRGELDVLI--SVDT------------FR   85 (257)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCC-CCCHHHHHHHHHHHHHHHHhcCCCcE--EEeC------------CC
Confidence            36788899898888999999999     44432 2222233333       222235553  4443            23


Q ss_pred             HHHHHHHHHhCCcEEE-EEcccc-cchhHHHhhcCCCCcEEEEEcccCCCCCCH-----------HH----HHHHHHHHH
Q 014691          101 VDVLRLAMELGADYID-VELQVA-REFNDSIRGKKPEKCKVIVSSHNYQYTPSV-----------ED----LSNLVARIQ  163 (420)
Q Consensus       101 ~~ll~~~~~~~~d~iD-iEl~~~-~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~-----------~e----l~~~~~~~~  163 (420)
                      .+.+++|++.|+++|- |..... ++..+ +..  +.+..+|+ .|+ .++|..           ++    +.+.++.+.
T Consensus        86 ~~v~e~al~~G~~iINdisg~~~~~~~~~-l~~--~~~~~vV~-m~~-~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~  160 (257)
T cd00739          86 AEVARAALEAGADIINDVSGGSDDPAMLE-VAA--EYGAPLVL-MHM-RGTPKTMQENPYYEDVVDEVLSFLEARLEAAE  160 (257)
T ss_pred             HHHHHHHHHhCCCEEEeCCCCCCChHHHH-HHH--HcCCCEEE-ECC-CCCCcccccCCCcccHHHHHHHHHHHHHHHHH
Confidence            4688899999988763 655433 33333 222  34678888 454 345532           22    456667788


Q ss_pred             HcCCCEEEEEe-----ecCCHHHHHHHHHHhc---cCCCCE
Q 014691          164 ASGADIVKFAT-----TALDITDVARVFQITV---HSQVPI  196 (420)
Q Consensus       164 ~~gaDivKia~-----~~~s~~D~~~ll~~~~---~~~~p~  196 (420)
                      +.|-+-=||..     ..++.+++..+++.+.   +.+.|+
T Consensus       161 ~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~~~pi  201 (257)
T cd00739         161 SAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQLGLPV  201 (257)
T ss_pred             HcCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhCCCcE
Confidence            88864223332     4456666666665433   335664

DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=86.10  E-value=14  Score=34.56  Aligned_cols=120  Identities=18%  Similarity=0.216  Sum_probs=73.0

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (420)
                      +...|...+.++...-++.+.+.|..++|+-++.   .+..+.++.++++.+- +++=.=|     .  .+.    +-.+
T Consensus         6 vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~t---p~a~~~I~~l~~~~~~-~~vGAGT-----V--l~~----e~a~   70 (201)
T PRK06015          6 VIPVLLIDDVEHAVPLARALAAGGLPAIEITLRT---PAALDAIRAVAAEVEE-AIVGAGT-----I--LNA----KQFE   70 (201)
T ss_pred             EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCC---ccHHHHHHHHHHHCCC-CEEeeEe-----C--cCH----HHHH
Confidence            3345888999999999999889999999999973   1223456666554432 3322111     1  122    2456


Q ss_pred             HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Q 014691          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT  174 (420)
Q Consensus       106 ~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~  174 (420)
                      .+++.|++|+ |-=..++++++...   +.+...|=-    --||++      +.++.++|+|++|+--
T Consensus        71 ~ai~aGA~Fi-vSP~~~~~vi~~a~---~~~i~~iPG----~~TptE------i~~A~~~Ga~~vK~FP  125 (201)
T PRK06015         71 DAAKAGSRFI-VSPGTTQELLAAAN---DSDVPLLPG----AATPSE------VMALREEGYTVLKFFP  125 (201)
T ss_pred             HHHHcCCCEE-ECCCCCHHHHHHHH---HcCCCEeCC----CCCHHH------HHHHHHCCCCEEEECC
Confidence            7788899987 33344555554432   234333322    125542      4556679999999865

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=86.06  E-value=7.3  Score=36.74  Aligned_cols=201  Identities=16%  Similarity=0.115  Sum_probs=115.8

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHH
Q 014691           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENER  100 (420)
Q Consensus        22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~  100 (420)
                      ..|++=|.|-..|+++++..++++... +|+||.=-=++...- .+.++.+++.. +.+++.-..+-.-|+.        
T Consensus         2 ~~p~LQvALD~~~l~~Ai~~a~~v~~~-~diiEvGTpLik~eG-~~aV~~lr~~~pd~~IvAD~Kt~D~G~~--------   71 (217)
T COG0269           2 SPPLLQVALDLLDLEEAIEIAEEVADY-VDIIEVGTPLIKAEG-MRAVRALRELFPDKIIVADLKTADAGAI--------   71 (217)
T ss_pred             CCcceEeeecccCHHHHHHHHHHhhhc-ceEEEeCcHHHHHhh-HHHHHHHHHHCCCCeEEeeeeecchhHH--------
Confidence            356777789999999999999988766 999998655544221 23566666554 6778887777544432        


Q ss_pred             HHHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH
Q 014691          101 VDVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI  179 (420)
Q Consensus       101 ~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~  179 (420)
                        ..+++++.|+||+-|=--.+..-+.... .+++.+..+.+=.-   +.++   ..+..+..+++|+|++=+=.-    
T Consensus        72 --e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~---~~~~---~~~~~~~l~~~gvd~~~~H~g----  139 (217)
T COG0269          72 --EARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLI---GVWD---PEQRAKWLKELGVDQVILHRG----  139 (217)
T ss_pred             --HHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEee---cCCC---HHHHHHHHHHhCCCEEEEEec----
Confidence              3567888999999985544444333333 33445555544322   2222   334444454578776543221    


Q ss_pred             HHHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhccccCCCceEEeee
Q 014691          180 TDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGII  259 (420)
Q Consensus       180 ~D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~~~~~~~~~~~v~  259 (420)
                      -|...   .    +.   .-+-..+..+-++...  |..          -+--|-++.+++..+...   .   ....++
T Consensus       140 ~D~q~---~----G~---~~~~~~l~~ik~~~~~--g~~----------vAVaGGI~~~~i~~~~~~---~---~~ivIv  191 (217)
T COG0269         140 RDAQA---A----GK---SWGEDDLEKIKKLSDL--GAK----------VAVAGGITPEDIPLFKGI---G---ADIVIV  191 (217)
T ss_pred             ccHhh---c----CC---CccHHHHHHHHHhhcc--Cce----------EEEecCCCHHHHHHHhcC---C---CCEEEE
Confidence            11100   0    00   0001112233333321  110          123455888888866543   2   368899


Q ss_pred             ccCccccccHHHH
Q 014691          260 GKPVGHSKSPILY  272 (420)
Q Consensus       260 G~pv~hS~SP~ih  272 (420)
                      |..|.+|..|.=-
T Consensus       192 GraIt~a~dp~~~  204 (217)
T COG0269         192 GRAITGAKDPAEA  204 (217)
T ss_pred             CchhcCCCCHHHH
Confidence            9999999998743

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=85.98  E-value=0.92  Score=47.49  Aligned_cols=32  Identities=19%  Similarity=0.199  Sum_probs=29.2

Q ss_pred             CEEEEEccchHHHHHHHHHHhC--CCeEEEEeCC
Q 014691          382 KLFVVIGAGGAGKALAYGAKAK--GARVVIANRT  413 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~--g~~i~v~nR~  413 (420)
                      ..|+|||+|-+|.+++|.|++.  |.+|+|+.+.
T Consensus        25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~   58 (460)
T TIGR03329        25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD   58 (460)
T ss_pred             eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            3699999999999999999998  7899999975

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=85.96  E-value=32  Score=32.60  Aligned_cols=143  Identities=21%  Similarity=0.175  Sum_probs=79.4

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (420)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~  111 (420)
                      ..|.+++.+-++++.+.++..|=+.-.+.+      ..+..+..+++. |.|+=.-..|..   .-+.+..-.+.+++.|
T Consensus        18 ~~t~~~i~~~~~~A~~~~~~avcv~p~~v~------~a~~~l~~~~v~-v~tVigFP~G~~---~~~~K~~e~~~Ai~~G   87 (221)
T PRK00507         18 EATEEDIDKLCDEAKEYGFASVCVNPSYVK------LAAELLKGSDVK-VCTVIGFPLGAN---TTAVKAFEAKDAIANG   87 (221)
T ss_pred             CCCHHHHHHHHHHHHHhCCeEEEECHHHHH------HHHHHhCCCCCe-EEEEecccCCCC---hHHHHHHHHHHHHHcC
Confidence            345777777777777666555544332221      223333333433 444444444432   2356666677888999


Q ss_pred             CcEEEEEcccc-------cchhHHHh---hc-CCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEee----c
Q 014691          112 ADYIDVELQVA-------REFNDSIR---GK-KPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT----A  176 (420)
Q Consensus       112 ~d~iDiEl~~~-------~~~~~~l~---~~-~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~----~  176 (420)
                      ++-||+=++..       +.+.+++.   .. +..-.|||+---+.    +.+++....+-+.+.|+|++|--+-    .
T Consensus        88 A~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L----~~e~i~~a~~~~~~agadfIKTsTG~~~~g  163 (221)
T PRK00507         88 ADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLL----TDEEKVKACEIAKEAGADFVKTSTGFSTGG  163 (221)
T ss_pred             CceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcC----CHHHHHHHHHHHHHhCCCEEEcCCCCCCCC
Confidence            99999866542       11222232   11 22346777653322    4566777777777888888886543    2


Q ss_pred             CCHHHHHHHHHH
Q 014691          177 LDITDVARVFQI  188 (420)
Q Consensus       177 ~s~~D~~~ll~~  188 (420)
                      .+.+|+..+.+.
T Consensus       164 at~~~v~~m~~~  175 (221)
T PRK00507        164 ATVEDVKLMRET  175 (221)
T ss_pred             CCHHHHHHHHHH
Confidence            456666555444

>PLN02334 ribulose-phosphate 3-epimerase

Probab=85.88  E-value=32  Score=32.49  Aligned_cols=112  Identities=16%  Similarity=0.159  Sum_probs=67.6

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc----hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCH
Q 014691           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNP----RENIKTLIKESPVPTLFTYRPIWEGGQYDGDE   97 (420)
Q Consensus        22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~----~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~   97 (420)
                      ..-.|+.++...+...+.++++++...|+|++=+|+---.....    .+.++.+++..+.|+-+++=.        .++
T Consensus         6 ~~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv--------~~p   77 (229)
T PLN02334          6 NDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMV--------TNP   77 (229)
T ss_pred             CCceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEecc--------CCH
Confidence            34457777777887888889999888899999998654321111    135666665556665555442        134


Q ss_pred             HHHHHHHHHHHHhCCcEE--EEEcccccchhHHHhhcCCCCcEEEEEcc
Q 014691           98 NERVDVLRLAMELGADYI--DVELQVAREFNDSIRGKKPEKCKVIVSSH  144 (420)
Q Consensus        98 ~~~~~ll~~~~~~~~d~i--DiEl~~~~~~~~~l~~~~~~~~kiI~S~H  144 (420)
                      +.|.+.   +.+.|+|+|  =+|-...+.....+...+..+.++-+|.|
T Consensus        78 ~d~~~~---~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~  123 (229)
T PLN02334         78 EDYVPD---FAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLN  123 (229)
T ss_pred             HHHHHH---HHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEEC
Confidence            555554   466799999  55510111122222222345778888887

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=85.74  E-value=13  Score=37.52  Aligned_cols=149  Identities=13%  Similarity=0.172  Sum_probs=86.1

Q ss_pred             EEeccCCCCCC---CCCCHHHHHHHHHHHHHhCCcEEEE---------Ecc--c----ccchhHHHhhcCCCCcEEEEEc
Q 014691           82 FTYRPIWEGGQ---YDGDENERVDVLRLAMELGADYIDV---------ELQ--V----AREFNDSIRGKKPEKCKVIVSS  143 (420)
Q Consensus        82 ~T~R~~~eGG~---~~~~~~~~~~ll~~~~~~~~d~iDi---------El~--~----~~~~~~~l~~~~~~~~kiI~S~  143 (420)
                      .|+|   ||++   +..+.++..++.+...+.|+++|.+         ...  .    +.+.++.+... ..++++.+=.
T Consensus         9 ~TLR---DG~q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~-~~~~~~~~ll   84 (337)
T PRK08195          9 VTLR---DGMHAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV-VKQAKIAALL   84 (337)
T ss_pred             CCCC---CcCcCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh-CCCCEEEEEe
Confidence            3566   6664   4567789999999999999999888         221  1    23444555432 2456664311


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEE-ecCCcchh---hhhhcc--ccCC
Q 014691          144 HNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGL-VMGERGLI---SRILCA--KFGG  217 (420)
Q Consensus       144 H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~-~MG~~G~~---SRi~~~--~~Gs  217 (420)
                           .|..... +-++.+.+.|.|++++++..+..+......+..+.....+.+. .|...-..   .+++..  -+|.
T Consensus        85 -----~pg~~~~-~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga  158 (337)
T PRK08195         85 -----LPGIGTV-DDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGA  158 (337)
T ss_pred             -----ccCcccH-HHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCC
Confidence                 1212122 3467788899999999998887777766777666655544443 33221111   111111  1343


Q ss_pred             cccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691          218 FLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (420)
Q Consensus       218 ~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~  246 (420)
                      ...  ++.+    .-|.++..++.++++.
T Consensus       159 ~~i--~i~D----T~G~~~P~~v~~~v~~  181 (337)
T PRK08195        159 QCV--YVVD----SAGALLPEDVRDRVRA  181 (337)
T ss_pred             CEE--EeCC----CCCCCCHHHHHHHHHH
Confidence            221  2222    3577777787777764

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=85.66  E-value=1.1  Score=46.90  Aligned_cols=32  Identities=38%  Similarity=0.407  Sum_probs=28.6

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEe
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIAN  411 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~n  411 (420)
                      .+++++|||||-+|.++|..|.+.|+ ++.|+-
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlE   52 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILE   52 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEE
Confidence            45689999999999999999999998 888874

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=85.62  E-value=1  Score=47.21  Aligned_cols=35  Identities=29%  Similarity=0.369  Sum_probs=31.7

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      .+++||||+|-+|-.++..|++.|++++++.+++.
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps  158 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPS  158 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            47899999999999999999999999999987653

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=85.60  E-value=1.2  Score=44.80  Aligned_cols=39  Identities=26%  Similarity=0.316  Sum_probs=33.1

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|.+++|.|+ |++|.+++..++..|++|+.+.++.+|.+
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~  197 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVD  197 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence            4789999998 99999999888899998888888776644

>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain

Probab=85.51  E-value=35  Score=33.00  Aligned_cols=197  Identities=16%  Similarity=0.170  Sum_probs=109.6

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC-
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-  111 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~-  111 (420)
                      +.++.+.-++...+.|+|.||+=.-... ..+.+.++.+.+.. +.++..-+|..             .+-++.+++.+ 
T Consensus        18 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~-~~~~~~~~~l~~~~~~~~~~~l~r~~-------------~~~v~~a~~~~~   83 (268)
T cd07940          18 TPEEKLEIARQLDELGVDVIEAGFPAAS-PGDFEAVKRIAREVLNAEICGLARAV-------------KKDIDAAAEALK   83 (268)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeCCCCC-HHHHHHHHHHHHhCCCCEEEEEccCC-------------HhhHHHHHHhCC
Confidence            4455555555556779999998432211 12234455554422 45555555632             12245566666 


Q ss_pred             ---CcEEEEEccccc------------chhH----HHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          112 ---ADYIDVELQVAR------------EFND----SIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       112 ---~d~iDiEl~~~~------------~~~~----~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                         ++.|.+=...++            +.++    .+...+..+.+|..+.=+...+ +.+.+.+.++++.++|+|.+-+
T Consensus        84 ~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~i~l  162 (268)
T cd07940          84 PAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRT-DLDFLIEVVEAAIEAGATTINI  162 (268)
T ss_pred             CCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence               888888543311            1111    2222344566666554443332 4678899999999999998887


Q ss_pred             Eeec--CCHHHHHHHHHHhccC-C---CCEEEEecCCcch--hhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHH
Q 014691          173 ATTA--LDITDVARVFQITVHS-Q---VPIIGLVMGERGL--ISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY  244 (420)
Q Consensus       173 a~~~--~s~~D~~~ll~~~~~~-~---~p~I~~~MG~~G~--~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~  244 (420)
                      +=+.  -+++++..+++.+++. +   .|+-..+=-..|.  ..=+..-.-|..+.=+++.. -.-+.|.++.+++...+
T Consensus       163 ~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~G-lG~~aGN~~tE~lv~~L  241 (268)
T cd07940         163 PDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTING-IGERAGNAALEEVVMAL  241 (268)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeec-cccccccccHHHHHHHH
Confidence            7554  4689999988876553 2   5554433222332  22222222344333344432 12457889988887666


Q ss_pred             hc
Q 014691          245 NF  246 (420)
Q Consensus       245 ~~  246 (420)
                      +.
T Consensus       242 ~~  243 (268)
T cd07940         242 KT  243 (268)
T ss_pred             Hh
Confidence            54

2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=85.50  E-value=1.1  Score=49.76  Aligned_cols=37  Identities=24%  Similarity=0.305  Sum_probs=32.8

Q ss_pred             CCEEEEEccchHHHHHHHHHH-hCCCeEEEEeCChhhh
Q 014691          381 GKLFVVIGAGGAGKALAYGAK-AKGARVVIANRTYENL  417 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~-~~g~~i~v~nR~~~ka  417 (420)
                      -++|.|||||-+|+.+++.++ ..|++|++++++.+..
T Consensus       309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l  346 (708)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGI  346 (708)
T ss_pred             ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHH
Confidence            368999999999999999998 7799999999987643

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=85.50  E-value=1.4  Score=43.80  Aligned_cols=39  Identities=36%  Similarity=0.399  Sum_probs=33.4

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++++|+|+|++|.+++..+...|+ .|+++.++.+|.+
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~  199 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLA  199 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHH
Confidence            47899999999999999998999999 5788888877643

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=85.43  E-value=1.1  Score=45.13  Aligned_cols=40  Identities=33%  Similarity=0.399  Sum_probs=35.6

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.||+|.|+|.|..|++++.-|..+|+.|.-.+|+..+
T Consensus       158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~  197 (336)
T KOG0069|consen  158 YDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLP  197 (336)
T ss_pred             ccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCc
Confidence            5678999999999999999999999999888888887543

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=85.42  E-value=0.81  Score=50.14  Aligned_cols=34  Identities=26%  Similarity=0.259  Sum_probs=30.7

Q ss_pred             CEEEEEccchHHHHHHHHHHhC-CCeEEEEeCChh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAK-GARVVIANRTYE  415 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~-g~~i~v~nR~~~  415 (420)
                      ..|+|+|||.+|.+++..|++. |+++.|+.|..+
T Consensus        33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~   67 (634)
T PRK08294         33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG   67 (634)
T ss_pred             CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence            4799999999999999999995 999999998754

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=85.42  E-value=1.4  Score=44.29  Aligned_cols=39  Identities=28%  Similarity=0.526  Sum_probs=34.2

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|.+|+|.|+|++|.+++..+...|+ +|+++.|+.++.+
T Consensus       187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~  226 (369)
T cd08301         187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFE  226 (369)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            47899999999999999998889999 8999998877644

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=85.41  E-value=1.2  Score=49.49  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=32.1

Q ss_pred             CEEEEEccchHHHHHHHHHH-hCCCeEEEEeCChhhh
Q 014691          382 KLFVVIGAGGAGKALAYGAK-AKGARVVIANRTYENL  417 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~-~~g~~i~v~nR~~~ka  417 (420)
                      ++|.|||||-+|+.+++.++ ..|++|++++++++..
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l  341 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGI  341 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHH
Confidence            68999999999999999888 5899999999997643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>cd08293 PTGR2 Prostaglandin reductase

Probab=85.33  E-value=1.3  Score=43.98  Aligned_cols=38  Identities=32%  Similarity=0.327  Sum_probs=32.7

Q ss_pred             CCEEEEEcc-chHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          381 GKLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       381 ~k~vlviGa-GGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      |+++||.|+ |++|.+++..+..+|+ +|+.+.++.++.+
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~  194 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQ  194 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence            379999997 9999999988888999 8999988877644

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase

Probab=85.28  E-value=20  Score=36.13  Aligned_cols=148  Identities=18%  Similarity=0.271  Sum_probs=85.9

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (420)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~  111 (420)
                      -.|.+..++|++++.+.|||+|=+-+.-.   +..+.+..+.+.+++|++.-+-       |+      +.+-..+++.|
T Consensus        30 T~Dv~atv~QI~~L~~aGceiVRvavp~~---~~A~al~~I~~~~~iPlVADIH-------Fd------~~lAl~a~~~g   93 (346)
T TIGR00612        30 TIDIDSTVAQIRALEEAGCDIVRVTVPDR---ESAAAFEAIKEGTNVPLVADIH-------FD------YRLAALAMAKG   93 (346)
T ss_pred             chhHHHHHHHHHHHHHcCCCEEEEcCCCH---HHHHhHHHHHhCCCCCEEEeeC-------CC------cHHHHHHHHhc
Confidence            34677888999999999999986655432   2345678888888999997654       21      11222344555


Q ss_pred             CcEEEEEccc--ccchhHHHh-hcCCCCcEE-EEEcc---------cCC-CCCC--HHHHHHHHHHHHHcCCCEEEEEee
Q 014691          112 ADYIDVELQV--AREFNDSIR-GKKPEKCKV-IVSSH---------NYQ-YTPS--VEDLSNLVARIQASGADIVKFATT  175 (420)
Q Consensus       112 ~d~iDiEl~~--~~~~~~~l~-~~~~~~~ki-I~S~H---------~f~-~tP~--~~el~~~~~~~~~~gaDivKia~~  175 (420)
                      +|-|=|-=..  .++.++.+. .++..++.| |.-.|         .+. .||.  .+...+.++-+.++|-+=+|+-..
T Consensus        94 ~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~K  173 (346)
T TIGR00612        94 VAKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMK  173 (346)
T ss_pred             cCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE
Confidence            6655553211  122233333 223333333 33222         011 2441  133455566677788888888888


Q ss_pred             cCCHHHHHHHHHHhcc-CCCC
Q 014691          176 ALDITDVARVFQITVH-SQVP  195 (420)
Q Consensus       176 ~~s~~D~~~ll~~~~~-~~~p  195 (420)
                      +.+..+..+..+++.+ .+.|
T Consensus       174 sSdv~~~i~ayr~la~~~dyP  194 (346)
T TIGR00612       174 ASDVAETVAAYRLLAERSDYP  194 (346)
T ss_pred             cCCHHHHHHHHHHHHhhCCCC
Confidence            8888887777766543 3555

Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=85.21  E-value=1.4  Score=44.26  Aligned_cols=118  Identities=20%  Similarity=0.269  Sum_probs=68.5

Q ss_pred             HHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEe--ccCCeEE-----EEecC-----HHHHHHHH
Q 014691          294 AKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRR--QSDGKLF-----GYNTD-----YVGAISAI  361 (420)
Q Consensus       294 ~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~--~~~g~l~-----G~NTD-----~~G~~~~l  361 (420)
                      ++..+.+++.++... ...|...+++..+..|--.++.-.-||.|-..  ...| +.     |.|+.     ..|.+-++
T Consensus        37 ~~l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~g-i~V~nap~~na~~vAE~~~~~~L~~  114 (324)
T COG0111          37 EELLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRG-ILVVNAPGGNAISVAELVLALLLAL  114 (324)
T ss_pred             HHHHhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccccccccCHHHHhhcC-CEEEeCCCcchHHHHHHHHHHHHHH
Confidence            344555666666666 55666777777665444333333334433211  0011 22     33444     23343333


Q ss_pred             Hhhhcc-----CCCCCCC---cccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          362 EDGLRG-----RLNVSGG---VSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       362 ~~~~~~-----~~~~~~~---~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      .+.+..     +.+.|..   .+..+.||++-|||.|..|+.++.-|..+|++|..+++.
T Consensus       115 ~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~  174 (324)
T COG0111         115 ARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPY  174 (324)
T ss_pred             hcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCC
Confidence            332110     1122322   234678999999999999999999999999999999993

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=85.19  E-value=1.6  Score=40.53  Aligned_cols=35  Identities=31%  Similarity=0.408  Sum_probs=32.0

Q ss_pred             cccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEe
Q 014691          377 SALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIAN  411 (420)
Q Consensus       377 ~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~n  411 (420)
                      .+++||+|+|||-+. +|+-++.-|.+.|+.|++++
T Consensus        58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~   93 (197)
T cd01079          58 NRLYGKTITIINRSEVVGRPLAALLANDGARVYSVD   93 (197)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEe
Confidence            478999999999888 99999999999999999994

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK02227 hypothetical protein; Provisional

Probab=85.15  E-value=8  Score=37.06  Aligned_cols=98  Identities=20%  Similarity=0.182  Sum_probs=59.9

Q ss_pred             HHHHhCCcEEEEEcc-------cccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec-C
Q 014691          106 LAMELGADYIDVELQ-------VAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA-L  177 (420)
Q Consensus       106 ~~~~~~~d~iDiEl~-------~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~-~  177 (420)
                      .+++.|+|+||+---       .+...++++...-.++..|=...=|+...|  .++......+...|+|+||+-.+. .
T Consensus        15 ~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p--~~~~~aa~~~a~~GvDyVKvGl~~~~   92 (238)
T PRK02227         15 EALAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKP--GTISLAALGAAATGADYVKVGLYGGK   92 (238)
T ss_pred             HHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCc--hHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence            356778999999431       234456666643233332322233443333  678888888889999999999885 4


Q ss_pred             CHHHHHHHHHH----hcc--CCCCEEEEecCCcc
Q 014691          178 DITDVARVFQI----TVH--SQVPIIGLVMGERG  205 (420)
Q Consensus       178 s~~D~~~ll~~----~~~--~~~p~I~~~MG~~G  205 (420)
                      +.++....++-    .+.  .+..+++......+
T Consensus        93 ~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~  126 (238)
T PRK02227         93 TAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAH  126 (238)
T ss_pred             cHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccc
Confidence            44455554432    222  25677877776655

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=85.10  E-value=1.5  Score=47.33  Aligned_cols=38  Identities=24%  Similarity=0.194  Sum_probs=32.3

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhC----CCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAK----GARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~----g~~i~v~nR~~  414 (420)
                      .+.+.++|.|||+|=+|.|+|+.|++.    |.+|+|+.+..
T Consensus        18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~   59 (576)
T PRK13977         18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELD   59 (576)
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCC
Confidence            345678999999999999999999986    46999998764

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=85.07  E-value=13  Score=35.41  Aligned_cols=85  Identities=18%  Similarity=0.147  Sum_probs=51.8

Q ss_pred             EeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccccc-------ch---hHHHhhcCCCCcEEEEEcccCCCCCCH
Q 014691           83 TYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR-------EF---NDSIRGKKPEKCKVIVSSHNYQYTPSV  152 (420)
Q Consensus        83 T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~-------~~---~~~l~~~~~~~~kiI~S~H~f~~tP~~  152 (420)
                      |+|.-.|--.+..+.++..++++...+.|+++|++=.-...       +.   ++.+... ..+.++.+  +.   +.. 
T Consensus         4 tlRDG~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~-~~~~~~~~--l~---~~~-   76 (265)
T cd03174           4 TLRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKL-VPNVKLQA--LV---RNR-   76 (265)
T ss_pred             CCCCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhc-cCCcEEEE--Ec---cCc-
Confidence            67743333334557789999999999999999887544322       22   2333221 11345422  11   111 


Q ss_pred             HHHHHHHHHHHHcCCCEEEEEeecC
Q 014691          153 EDLSNLVARIQASGADIVKFATTAL  177 (420)
Q Consensus       153 ~el~~~~~~~~~~gaDivKia~~~~  177 (420)
                         .+.++.+.+.|+|.+.+.....
T Consensus        77 ---~~~i~~a~~~g~~~i~i~~~~s   98 (265)
T cd03174          77 ---EKGIERALEAGVDEVRIFDSAS   98 (265)
T ss_pred             ---hhhHHHHHhCCcCEEEEEEecC
Confidence               4457777788899999888766

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=85.06  E-value=1.9  Score=44.45  Aligned_cols=127  Identities=24%  Similarity=0.340  Sum_probs=75.2

Q ss_pred             eccCccccccHHHHHHHHHHcCCCceeecccc---ccHHHHHHHhcCCCCCEEEEc---ccchHHHHhhhhcccHHHHHh
Q 014691          259 IGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV---DDIAKFFQTYSSNDFAGFSCT---IPHKEAAVKCCDEVDTVAKSI  332 (420)
Q Consensus       259 ~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~---~~l~~~~~~~~~~~~~G~~VT---~P~K~~i~~~~d~l~~~A~~i  332 (420)
                      -|-||+--+. .+|.++   -|+|..=..+++   +++.++++.+ .+.|.|.|+-   -|.+..+-..+.+        
T Consensus        98 ag~pVmeGKa-~Lfk~f---aGid~~pI~ld~~~~~ei~~~Vkal-~p~FgginLedi~ap~cf~ie~~lr~--------  164 (432)
T COG0281          98 AGKPVMEGKA-VLFKAF---AGIDVLPIELDVGTNNEIIEFVKAL-EPTFGGINLEDIDAPRCFAIEERLRY--------  164 (432)
T ss_pred             cCcchhhhHH-HHHHHh---cCCCceeeEeeCCChHHHHHHHHHh-hhcCCCcceeecccchhhHHHHHHhh--------
Confidence            3445554444 233321   356644344444   3566677666 6789999863   4555444333332        


Q ss_pred             cceeEEEEeccCCeEEEEecC-HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC---eEE
Q 014691          333 GAVNCIIRRQSDGKLFGYNTD-YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA---RVV  408 (420)
Q Consensus       333 GAvNTi~~~~~~g~l~G~NTD-~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~---~i~  408 (420)
                       -.|.=++.  |. .+|.-.= -.|++++|+-.           +..++..++++.|||-+|-+++..|...|+   +|+
T Consensus       165 -~~~IPvFh--DD-qqGTaiv~lA~llnalk~~-----------gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~  229 (432)
T COG0281         165 -RMNIPVFH--DD-QQGTAIVTLAALLNALKLT-----------GKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIF  229 (432)
T ss_pred             -cCCCCccc--cc-ccHHHHHHHHHHHHHHHHh-----------CCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEE
Confidence             12222332  22 1333222 33445555432           356788899999999999999999999998   699


Q ss_pred             EEeCC
Q 014691          409 IANRT  413 (420)
Q Consensus       409 v~nR~  413 (420)
                      +++|.
T Consensus       230 ~~D~~  234 (432)
T COG0281         230 VVDRK  234 (432)
T ss_pred             EEecC
Confidence            99974

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=85.03  E-value=13  Score=36.32  Aligned_cols=124  Identities=17%  Similarity=0.165  Sum_probs=66.4

Q ss_pred             HHHHHhhCCCc-EEEEeccCCCCCCCCCCHHHHHHHHHHHHH-hCCcEEEEEccc-ccchhHHHhhcCCCCcEEEE----
Q 014691           69 IKTLIKESPVP-TLFTYRPIWEGGQYDGDENERVDVLRLAME-LGADYIDVELQV-AREFNDSIRGKKPEKCKVIV----  141 (420)
Q Consensus        69 l~~l~~~~~~P-iI~T~R~~~eGG~~~~~~~~~~~ll~~~~~-~~~d~iDiEl~~-~~~~~~~l~~~~~~~~kiI~----  141 (420)
                      .+.+.+..+.| ++.-.  . - |.+..+.++-.+--.+.++ .|++.|-||-.. ..+.++.+.   ..++.|+.    
T Consensus        67 ~~~V~r~~~~p~vvaD~--p-f-g~y~~~~~~av~~a~r~~~~aGa~aVkiEdg~~~~~~I~al~---~agIpV~gHiGL  139 (264)
T PRK00311         67 TKAVARGAPRALVVADM--P-F-GSYQASPEQALRNAGRLMKEAGAHAVKLEGGEEVAETIKRLV---ERGIPVMGHLGL  139 (264)
T ss_pred             HHHHHhcCCCCcEEEeC--C-C-CCccCCHHHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHH---HCCCCEeeeecc
Confidence            44455556776 44333  1 1 3444455543333333344 799999999752 122333333   34555541    


Q ss_pred             ---EcccC------CCCCC-HHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEEecCCc
Q 014691          142 ---SSHNY------QYTPS-VEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGER  204 (420)
Q Consensus       142 ---S~H~f------~~tP~-~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~~MG~~  204 (420)
                         |.|.+      ..|.. .+++.+..+.+.+.|||.+=+=..+.  +..   .++.+..++|+|.|+-|+.
T Consensus       140 ~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v~~--~~~---~~i~~~l~iP~igiGaG~~  207 (264)
T PRK00311        140 TPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECVPA--ELA---KEITEALSIPTIGIGAGPD  207 (264)
T ss_pred             cceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCCCH--HHH---HHHHHhCCCCEEEeccCCC
Confidence               11111      11221 24566666667789999887655532  333   2334445789999988874

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=85.02  E-value=28  Score=33.31  Aligned_cols=123  Identities=16%  Similarity=0.223  Sum_probs=77.8

Q ss_pred             HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccc---------------cchhHHHh--
Q 014691           68 NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVA---------------REFNDSIR--  130 (420)
Q Consensus        68 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~---------------~~~~~~l~--  130 (420)
                      .++.+.+...+|+++-...    |. - +.+...+..+..++.|++.|=||-...               ++..+.+.  
T Consensus        60 ~~~~I~~~~~~Pv~~D~~~----G~-g-~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa  133 (243)
T cd00377          60 AVRRIARAVDLPVIADADT----GY-G-NALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAA  133 (243)
T ss_pred             HHHHHHhhccCCEEEEcCC----CC-C-CHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHH
Confidence            3445556678999988775    32 2 445666778888899999999976542               22333343  


Q ss_pred             -hcCCC--CcEEEEEccc-CCCC-CCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEEec
Q 014691          131 -GKKPE--KCKVIVSSHN-YQYT-PSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVM  201 (420)
Q Consensus       131 -~~~~~--~~kiI~S~H~-f~~t-P~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~~M  201 (420)
                       .+..+  ..-|| -.-| +... .+.+|..++.+...+.|||.+=+- .+.+.++..++.+   ..+.|++.+.+
T Consensus       134 ~~a~~~~~~~~Ii-ARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~-~~~~~~~~~~~~~---~~~~Pl~~~~~  204 (243)
T cd00377         134 RDARDDLPDFVII-ARTDALLAGEEGLDEAIERAKAYAEAGADGIFVE-GLKDPEEIRAFAE---APDVPLNVNMT  204 (243)
T ss_pred             HHHHhccCCeEEE-EEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeC-CCCCHHHHHHHHh---cCCCCEEEEec
Confidence             22222  34444 4433 3222 467888999999999999998764 4456666655444   45778877643

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=84.95  E-value=1.3  Score=44.29  Aligned_cols=39  Identities=41%  Similarity=0.524  Sum_probs=34.3

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|+++||.|+|++|.+++..+...|+ +|+++.++.++.+
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~  216 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLE  216 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            57899999999999999999999999 9999988876643

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=84.73  E-value=1.8  Score=42.73  Aligned_cols=40  Identities=23%  Similarity=0.346  Sum_probs=36.1

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhcC
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL  420 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~L  420 (420)
                      .+++=-||-|-+|.+.+..|...|++|+|+|||.++.+++
T Consensus        35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f   74 (327)
T KOG0409|consen   35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEF   74 (327)
T ss_pred             cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHH
Confidence            4677789999999999999999999999999999988653

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=84.61  E-value=1.5  Score=43.22  Aligned_cols=39  Identities=33%  Similarity=0.410  Sum_probs=32.8

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|.++||.|+ |++|.+++..+...|++|+.+.++.++.+
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~  177 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVA  177 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            4789999995 89999999888889998888888776654

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain

Probab=84.58  E-value=15  Score=35.42  Aligned_cols=103  Identities=16%  Similarity=0.115  Sum_probs=63.9

Q ss_pred             EEeccCCCCCC---CCCCHHHHHHHHHHHHHhCCcEEEEEc---------------ccccchhHHHhhcCCCCcEEEEEc
Q 014691           82 FTYRPIWEGGQ---YDGDENERVDVLRLAMELGADYIDVEL---------------QVAREFNDSIRGKKPEKCKVIVSS  143 (420)
Q Consensus        82 ~T~R~~~eGG~---~~~~~~~~~~ll~~~~~~~~d~iDiEl---------------~~~~~~~~~l~~~~~~~~kiI~S~  143 (420)
                      .|+|   ||++   +..+.++..++++...+.|+++|++=.               ..+.+.++.+... ..++++.+-.
T Consensus         6 ~TlR---DG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~-~~~~~~~~~~   81 (263)
T cd07943           6 VTLR---DGMHAVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA-LKQAKLGVLL   81 (263)
T ss_pred             CCCC---cCcccCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHh-ccCCEEEEEe
Confidence            4667   5554   456778999999999999999988741               0122344445332 2456764322


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCC
Q 014691          144 HNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV  194 (420)
Q Consensus       144 H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~  194 (420)
                      +.  ..+..    +-++++.+.|.|++.++...++........+..+....
T Consensus        82 ~~--~~~~~----~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~  126 (263)
T cd07943          82 LP--GIGTV----DDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGM  126 (263)
T ss_pred             cC--CccCH----HHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCC
Confidence            21  11122    33677778899999999887776666555555554443

4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=84.51  E-value=1.1  Score=48.90  Aligned_cols=31  Identities=35%  Similarity=0.458  Sum_probs=28.4

Q ss_pred             EEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       383 ~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      .|||||+|++|.+++..+++.|++|.|+...
T Consensus        31 DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~   61 (617)
T PTZ00139         31 DAVVVGAGGAGLRAALGLVELGYKTACISKL   61 (617)
T ss_pred             CEEEECccHHHHHHHHHHHHcCCcEEEEecc
Confidence            5999999999999999999999999998764

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=84.46  E-value=1.2  Score=47.72  Aligned_cols=38  Identities=24%  Similarity=0.432  Sum_probs=32.6

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..++||+|||||+|-.|-=++..|.....+|++.-|+.
T Consensus       179 ~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~  216 (531)
T PF00743_consen  179 EPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG  216 (531)
T ss_dssp             GGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred             hhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence            56899999999999999999999988766999888864

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=84.44  E-value=37  Score=33.45  Aligned_cols=79  Identities=15%  Similarity=0.026  Sum_probs=54.3

Q ss_pred             EeecCC-CHHHHHHHHHhhhhcCCCEEEEEecCCCCC--CchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691           28 VPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKNF--NPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (420)
Q Consensus        28 v~l~~~-~~~e~~~~~~~~~~~~~D~vElRlD~l~~~--~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (420)
                      +-|... +.++..+.++.+...++|.|++-+|.....  ...+.++.+++..+.|+++-..         .+.    +..
T Consensus       120 ~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v---------~s~----~~a  186 (299)
T cd02809         120 FQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGI---------LTP----EDA  186 (299)
T ss_pred             EEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeec---------CCH----HHH
Confidence            344443 777777777777778999999999986421  1124677777777899988743         122    235


Q ss_pred             HHHHHhCCcEEEEEc
Q 014691          105 RLAMELGADYIDVEL  119 (420)
Q Consensus       105 ~~~~~~~~d~iDiEl  119 (420)
                      +.+.+.|+|+|++.-
T Consensus       187 ~~a~~~G~d~I~v~~  201 (299)
T cd02809         187 LRAVDAGADGIVVSN  201 (299)
T ss_pred             HHHHHCCCCEEEEcC
Confidence            667788999999963

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=84.42  E-value=1.1  Score=48.16  Aligned_cols=38  Identities=18%  Similarity=0.303  Sum_probs=35.1

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      .+++|+|.|..|+.++..|.+.|.++++++.|++++++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~  455 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDE  455 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHH
Confidence            47999999999999999999999999999999998764

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=84.40  E-value=11  Score=35.15  Aligned_cols=121  Identities=26%  Similarity=0.247  Sum_probs=71.5

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (420)
                      .|...+...+.+++...++.+.+.|..++|+-+.-   .+..+.++.++++.+- +++=.=|     .  .+.    +-.
T Consensus         9 ~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t---~~a~~~I~~l~~~~p~-~~vGAGT-----V--~~~----e~a   73 (196)
T PF01081_consen    9 KIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRT---PNALEAIEALRKEFPD-LLVGAGT-----V--LTA----EQA   73 (196)
T ss_dssp             SEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTS---TTHHHHHHHHHHHHTT-SEEEEES---------SH----HHH
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCC---ccHHHHHHHHHHHCCC-CeeEEEe-----c--cCH----HHH
Confidence            45667889999999999998889999999999874   1223455555554432 3322111     1  122    245


Q ss_pred             HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Q 014691          105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT  174 (420)
Q Consensus       105 ~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~  174 (420)
                      +.+++.|++|+ +-=..++++.+...   +.+..+|=..    -||++      +.++.++|+|++|+--
T Consensus        74 ~~a~~aGA~Fi-vSP~~~~~v~~~~~---~~~i~~iPG~----~TptE------i~~A~~~G~~~vK~FP  129 (196)
T PF01081_consen   74 EAAIAAGAQFI-VSPGFDPEVIEYAR---EYGIPYIPGV----MTPTE------IMQALEAGADIVKLFP  129 (196)
T ss_dssp             HHHHHHT-SEE-EESS--HHHHHHHH---HHTSEEEEEE----SSHHH------HHHHHHTT-SEEEETT
T ss_pred             HHHHHcCCCEE-ECCCCCHHHHHHHH---HcCCcccCCc----CCHHH------HHHHHHCCCCEEEEec
Confidence            67888899987 43345555554443   2455665443    26653      5566689999999853

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=84.39  E-value=31  Score=34.46  Aligned_cols=94  Identities=20%  Similarity=0.238  Sum_probs=54.7

Q ss_pred             CCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEE--EEEec-CCCCCCchhHHHHHH-hhCCCcEEEEeccCCCCCCCC
Q 014691           19 MRKNPTLICVPIMGESVDKMVVDMGKANASGADLV--EIRLD-GLKNFNPRENIKTLI-KESPVPTLFTYRPIWEGGQYD   94 (420)
Q Consensus        19 ~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~v--ElRlD-~l~~~~~~~~l~~l~-~~~~~PiI~T~R~~~eGG~~~   94 (420)
                      ++-+.+.+-.|+.+=|--.+...+.   +.|+|+.  |.=-+ .+.-... .....+. ...+.|+++.+-     |   
T Consensus         6 ~~~~~~~~lAPM~g~td~~fR~l~~---~~g~~~~~temvs~~~~~~~~~-~~~~~~~~~~~~~~~~vQl~-----g---   73 (321)
T PRK10415          6 YQLRNRLIAAPMAGITDRPFRTLCY---EMGAGLTVSEMMSSNPQVWESD-KSRLRMVHIDEPGIRTVQIA-----G---   73 (321)
T ss_pred             ccCCCCEEecCCCCCCcHHHHHHHH---HHCCCEEEEccEEcchhhhcCH-hHHHHhccCccCCCEEEEEe-----C---
Confidence            3445578888999988777776554   4577763  53222 1110011 1111111 123467766664     2   


Q ss_pred             CCHHHHHHHHHHHHHhCCcEEEEEcccccc
Q 014691           95 GDENERVDVLRLAMELGADYIDVELQVARE  124 (420)
Q Consensus        95 ~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~  124 (420)
                      .++++..+..+.+.+.|+|.|||-+.++..
T Consensus        74 ~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~  103 (321)
T PRK10415         74 SDPKEMADAARINVESGAQIIDINMGCPAK  103 (321)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCCCHH
Confidence            255666676666677889999999988753

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=84.38  E-value=29  Score=34.08  Aligned_cols=92  Identities=22%  Similarity=0.221  Sum_probs=52.0

Q ss_pred             CCCCCcEEEEe-ecCCCHHHHHHHHHhhhhcCCCEEEE--------------EecCCC----------CCCchhHHHHHH
Q 014691           19 MRKNPTLICVP-IMGESVDKMVVDMGKANASGADLVEI--------------RLDGLK----------NFNPRENIKTLI   73 (420)
Q Consensus        19 ~~~~~~~icv~-l~~~~~~e~~~~~~~~~~~~~D~vEl--------------RlD~l~----------~~~~~~~l~~l~   73 (420)
                      +.=+.|.+..| ..+. -++..+.+.   ..|+++++.              |+..+.          +......++.+.
T Consensus         8 ~~l~npi~~aag~~~~-~~~~~~~~~---~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~   83 (300)
T TIGR01037         8 IRFKNPLILASGIMGS-GVESLRRID---RSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELK   83 (300)
T ss_pred             EECCCCCEeCCcCCCC-CHHHHHHHH---HcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHH
Confidence            44455666555 3343 344444343   458999999              443322          111112233333


Q ss_pred             ---hhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHh--CCcEEEEEcccc
Q 014691           74 ---KESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL--GADYIDVELQVA  122 (420)
Q Consensus        74 ---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~--~~d~iDiEl~~~  122 (420)
                         +..+.|+++.+.     |.   +.+++.+..+...+.  ++|+||+-+.++
T Consensus        84 ~~~~~~~~pl~~qi~-----g~---~~~~~~~~a~~~~~~~~~~d~ielN~~cP  129 (300)
T TIGR01037        84 PVREEFPTPLIASVY-----GS---SVEEFAEVAEKLEKAPPYVDAYELNLSCP  129 (300)
T ss_pred             HHhccCCCcEEEEee-----cC---CHHHHHHHHHHHHhccCccCEEEEECCCC
Confidence               223579999986     22   456777777776654  389999987764

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=84.36  E-value=1.5  Score=44.24  Aligned_cols=36  Identities=31%  Similarity=0.411  Sum_probs=30.3

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      .|++|+|.|+|++|.+++..+..+|++++++.++.+
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~  218 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSN  218 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            478999999999999999999999998777665543

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=84.35  E-value=16  Score=36.74  Aligned_cols=148  Identities=16%  Similarity=0.188  Sum_probs=85.9

Q ss_pred             EEeccCCCCCC---CCCCHHHHHHHHHHHHHhCCcEEEE---------Eccc------ccchhHHHhhcCCCCcEEEEEc
Q 014691           82 FTYRPIWEGGQ---YDGDENERVDVLRLAMELGADYIDV---------ELQV------AREFNDSIRGKKPEKCKVIVSS  143 (420)
Q Consensus        82 ~T~R~~~eGG~---~~~~~~~~~~ll~~~~~~~~d~iDi---------El~~------~~~~~~~l~~~~~~~~kiI~S~  143 (420)
                      .|+|   +|++   +..+.++..++.+...+.|+++|.+         .++.      +.+.++.+... ..++++.+-.
T Consensus         8 ~TLR---DG~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~-~~~~~~~~ll   83 (333)
T TIGR03217         8 VTLR---DGMHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADV-VKRAKVAVLL   83 (333)
T ss_pred             CCCC---CCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHh-CCCCEEEEEe
Confidence            4567   5554   4567789999999999999999888         2221      22344444433 2345554222


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEE-ecCCcchhh------hhhccccC
Q 014691          144 HNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGL-VMGERGLIS------RILCAKFG  216 (420)
Q Consensus       144 H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~-~MG~~G~~S------Ri~~~~~G  216 (420)
                           .|.... .+-++.+.+.|+|++++++..+..+......+..+.....+... .|...-.+.      +.+. -+|
T Consensus        84 -----~pg~~~-~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~-~~G  156 (333)
T TIGR03217        84 -----LPGIGT-VHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLME-SYG  156 (333)
T ss_pred             -----ccCccC-HHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHH-hcC
Confidence                 121111 23468888899999999998887777766667666665555443 333221111      2222 134


Q ss_pred             CcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691          217 GFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (420)
Q Consensus       217 s~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~  246 (420)
                      ....  ++.+    .-|.++..++.++++.
T Consensus       157 a~~i--~i~D----T~G~~~P~~v~~~v~~  180 (333)
T TIGR03217       157 ADCV--YIVD----SAGAMLPDDVRDRVRA  180 (333)
T ss_pred             CCEE--EEcc----CCCCCCHHHHHHHHHH
Confidence            3322  2222    2577777788777664

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>PLN02342 ornithine carbamoyltransferase

Probab=84.21  E-value=49  Score=33.63  Aligned_cols=187  Identities=13%  Similarity=0.146  Sum_probs=115.6

Q ss_pred             EEecCCcchhhhhhccccCCcccccccCCCccCCC------CCCCHHhHHHHHhc----cc----------cCCCceEEe
Q 014691          198 GLVMGERGLISRILCAKFGGFLTFGTLENGIVSAP------GQPTIKDLLDLYNF----RQ----------MGPDTKVFG  257 (420)
Q Consensus       198 ~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAP------GQ~~~~~l~~~~~~----~~----------~~~~~~~~~  257 (420)
                      +++.....+-+|+.+..+|+.-|..+.+..  ...      .|++-+++..+++.    ..          .......+-
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~lsi~dls~~ei~~ll~~A~~lk~~~~~~~~~~~~L~gk~va~   90 (348)
T PLN02342         13 AVSSSSRARRGLVVCAASSSAAAPSPIKGK--SKPKHFLHIDDFDKEEILGLLDRAKEVKALLKSGDRSFQPFKGKSMAM   90 (348)
T ss_pred             cccchhHHHHhhhHhhhhcCCCCcccccCC--CCCCCccchhhCCHHHHHHHHHHHHHHHhhhhcCccccccCCCCEEEE
Confidence            455666778889999999987775544432  222      25666777776652    11          011112333


Q ss_pred             eeccCccccccHHHHHHHHHHcCCCceeecccc------ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHHHH
Q 014691          258 IIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV------DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS  331 (420)
Q Consensus       258 v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~------~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~  331 (420)
                      +|=.|=  +|+-.=|..+...||-...|.....      +++.+..+.+... +.++-+=.|-...+.       +.|+.
T Consensus        91 lF~epS--TRTR~SFE~A~~~LGg~~i~l~~~~ss~~kGESl~DTarvLs~y-~D~IviR~~~~~~~~-------~la~~  160 (348)
T PLN02342         91 IFTKPS--MRTRVSFETGFFLLGGHALYLGPDDIQLGKREETRDIARVLSRY-NDIIMARVFAHQDVL-------DLAEY  160 (348)
T ss_pred             EecCCC--cchHHHHHHHHHHcCCcEEEeCcccccCCCCcCHHHHHHHHHHh-CCEEEEeCCChHHHH-------HHHHh
Confidence            555553  4666678899999999988874332      4688887777544 677777666443322       22222


Q ss_pred             hcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEE
Q 014691          332 IGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIA  410 (420)
Q Consensus       332 iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~  410 (420)
                      .+ | .|++-. ++  ..+=|-...=+.++.+..           ..++|.+++++|-+. ++++.+.++..+|++|+++
T Consensus       161 ~~-v-PVINA~-~~--~~HPtQaLaDl~Ti~e~~-----------G~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~  224 (348)
T PLN02342        161 SS-V-PVINGL-TD--YNHPCQIMADALTIIEHI-----------GRLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCA  224 (348)
T ss_pred             CC-C-CEEECC-CC--CCChHHHHHHHHHHHHHh-----------CCcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEE
Confidence            11 2 344431 22  235554444455555543           357899999999754 9999999999999998887


Q ss_pred             eC
Q 014691          411 NR  412 (420)
Q Consensus       411 nR  412 (420)
                      .-
T Consensus       225 ~P  226 (348)
T PLN02342        225 CP  226 (348)
T ss_pred             CC
Confidence            63

>PLN02827 Alcohol dehydrogenase-like

Probab=84.15  E-value=1.7  Score=44.15  Aligned_cols=39  Identities=31%  Similarity=0.505  Sum_probs=33.0

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++|+|+|+|+.|.+++..+...|+ .|++++++.+|.+
T Consensus       193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~  232 (378)
T PLN02827        193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAE  232 (378)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHH
Confidence            47899999999999999998889999 6888887766643

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=84.06  E-value=38  Score=31.93  Aligned_cols=150  Identities=17%  Similarity=0.210  Sum_probs=80.7

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCC----CchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHH
Q 014691           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNF----NPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLA  107 (420)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~----~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~  107 (420)
                      ..++.++.+.+   ...|+|.+-+| |.-...    .....++.+.+....|+++.      ||-.  +. +   -.+.+
T Consensus        31 ~~~~~e~a~~~---~~~G~~~l~i~-dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~------GGi~--~~-~---~~~~~   94 (241)
T PRK13585         31 YGDPVEVAKRW---VDAGAETLHLV-DLDGAFEGERKNAEAIEKIIEAVGVPVQLG------GGIR--SA-E---DAASL   94 (241)
T ss_pred             CCCHHHHHHHH---HHcCCCEEEEE-echhhhcCCcccHHHHHHHHHHcCCcEEEc------CCcC--CH-H---HHHHH
Confidence            45676666654   46799999888 543211    22345667767778899873      4432  21 1   22345


Q ss_pred             HHhCCcEEEEEccc--ccchhHHHhhcCCCCcEEEEEc--c-------cCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec
Q 014691          108 MELGADYIDVELQV--AREFNDSIRGKKPEKCKVIVSS--H-------NYQYTPSVEDLSNLVARIQASGADIVKFATTA  176 (420)
Q Consensus       108 ~~~~~d~iDiEl~~--~~~~~~~l~~~~~~~~kiI~S~--H-------~f~~tP~~~el~~~~~~~~~~gaDivKia~~~  176 (420)
                      +..|++.|-+--..  ..+.+.++... -+..+|++|.  +       .+.... ..+..+..+++.+.|++-+=+.-..
T Consensus        95 ~~~Ga~~v~iGs~~~~~~~~~~~i~~~-~g~~~i~~sid~~~~~v~~~g~~~~~-~~~~~~~~~~~~~~G~~~i~~~~~~  172 (241)
T PRK13585         95 LDLGVDRVILGTAAVENPEIVRELSEE-FGSERVMVSLDAKDGEVVIKGWTEKT-GYTPVEAAKRFEELGAGSILFTNVD  172 (241)
T ss_pred             HHcCCCEEEEChHHhhChHHHHHHHHH-hCCCcEEEEEEeeCCEEEECCCcccC-CCCHHHHHHHHHHcCCCEEEEEeec
Confidence            56799998885433  23344555432 2344566543  2       111111 1145666667778899866443221


Q ss_pred             C----CHHHHHHHHHHhccCCCCEEEE
Q 014691          177 L----DITDVARVFQITVHSQVPIIGL  199 (420)
Q Consensus       177 ~----s~~D~~~ll~~~~~~~~p~I~~  199 (420)
                      .    +..|...+-++....+.|+|+.
T Consensus       173 ~~g~~~g~~~~~i~~i~~~~~iPvia~  199 (241)
T PRK13585        173 VEGLLEGVNTEPVKELVDSVDIPVIAS  199 (241)
T ss_pred             CCCCcCCCCHHHHHHHHHhCCCCEEEe
Confidence            1    1223333344444457887765

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=84.06  E-value=2  Score=41.61  Aligned_cols=48  Identities=27%  Similarity=0.404  Sum_probs=34.2

Q ss_pred             HHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhC----CC-------eEEEEeCC
Q 014691          355 VGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAK----GA-------RVVIANRT  413 (420)
Q Consensus       355 ~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~----g~-------~i~v~nR~  413 (420)
                      .|++++++-.           +.++++.+++++|||-+|-+++.-|...    |.       +|+++||.
T Consensus        10 Agll~Al~~~-----------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~   68 (255)
T PF03949_consen   10 AGLLNALRVT-----------GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSK   68 (255)
T ss_dssp             HHHHHHHHHH-----------TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETT
T ss_pred             HHHHHHHHHh-----------CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEecc
Confidence            4667777543           2467888999999999888887776665    86       49999974

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=84.00  E-value=20  Score=33.58  Aligned_cols=127  Identities=17%  Similarity=0.209  Sum_probs=67.1

Q ss_pred             CcEEEEeecCCCHHHHHHHHHhhhhcC-CCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHH
Q 014691           23 PTLICVPIMGESVDKMVVDMGKANASG-ADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERV  101 (420)
Q Consensus        23 ~~~icv~l~~~~~~e~~~~~~~~~~~~-~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~  101 (420)
                      .|.+..|+.+-+-.+....+.+   .| ...++-|......  ..+.++.+++..+.|+.+.+.-..       ......
T Consensus         3 ~pi~~a~m~g~~~~~~~~~~~~---~G~ig~i~~~~~~~~~--~~~~~~~i~~~~~~~~~v~~i~~~-------~~~~~~   70 (236)
T cd04730           3 YPIIQAPMAGVSTPELAAAVSN---AGGLGFIGAGYLTPEA--LRAEIRKIRALTDKPFGVNLLVPS-------SNPDFE   70 (236)
T ss_pred             CCEECCCCCCCCCHHHHHHHHh---CCCccccCCCCCCHHH--HHHHHHHHHHhcCCCeEEeEecCC-------CCcCHH
Confidence            4666667776665555554443   33 2554333221100  012233343333457666555211       001233


Q ss_pred             HHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Q 014691          102 DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT  174 (420)
Q Consensus       102 ~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~  174 (420)
                      +.++.+.+.|+|.|.+-.....++.+.+.   +.+.++|.+.|+      .    +.++++.+.|+|++.+..
T Consensus        71 ~~~~~~~~~g~d~v~l~~~~~~~~~~~~~---~~~i~~i~~v~~------~----~~~~~~~~~gad~i~~~~  130 (236)
T cd04730          71 ALLEVALEEGVPVVSFSFGPPAEVVERLK---AAGIKVIPTVTS------V----EEARKAEAAGADALVAQG  130 (236)
T ss_pred             HHHHHHHhCCCCEEEEcCCCCHHHHHHHH---HcCCEEEEeCCC------H----HHHHHHHHcCCCEEEEeC
Confidence            56667778899999886554444444443   346788888662      2    223455567999998744

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=83.99  E-value=1.7  Score=42.11  Aligned_cols=37  Identities=19%  Similarity=0.205  Sum_probs=30.2

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCC-----------eEEEEeCC
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGA-----------RVVIANRT  413 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~-----------~i~v~nR~  413 (420)
                      .++++.+++++|||.+|-+++.-|.+.++           +|+++||.
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~   68 (254)
T cd00762          21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRK   68 (254)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCC
Confidence            46778899999999999999988776654           58888864

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=83.96  E-value=8.2  Score=37.97  Aligned_cols=84  Identities=20%  Similarity=0.320  Sum_probs=55.9

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhc--CCCEEEEEecCCCC--------CCc---hhHHHHHHhhCCCcEEEEeccCCCCCC
Q 014691           26 ICVPIMGESVDKMVVDMGKANAS--GADLVEIRLDGLKN--------FNP---RENIKTLIKESPVPTLFTYRPIWEGGQ   92 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~--~~D~vElRlD~l~~--------~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~   92 (420)
                      +.+.|.+.+.+++..-++.+.+.  ++|.||+=+=+=..        .++   .+.++.+++..++|+.+-+|.      
T Consensus        93 l~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~------  166 (300)
T TIGR01037        93 LIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP------  166 (300)
T ss_pred             EEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC------
Confidence            66899999999998877776544  39999997654211        011   122344444557888877762      


Q ss_pred             CCCCHHHHHHHHHHHHHhCCcEEEEE
Q 014691           93 YDGDENERVDVLRLAMELGADYIDVE  118 (420)
Q Consensus        93 ~~~~~~~~~~ll~~~~~~~~d~iDiE  118 (420)
                         +.++-.++.+.+.+.|+|+|.+-
T Consensus       167 ---~~~~~~~~a~~l~~~G~d~i~v~  189 (300)
T TIGR01037       167 ---NVTDITEIAKAAEEAGADGLTLI  189 (300)
T ss_pred             ---ChhhHHHHHHHHHHcCCCEEEEE
Confidence               22344567777778899999874

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=83.79  E-value=1.6  Score=44.32  Aligned_cols=39  Identities=31%  Similarity=0.569  Sum_probs=34.1

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|.+++|+|+|++|.+++..+..+|+ +|+++.++.++.+
T Consensus       190 ~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~  229 (373)
T cd08299         190 PGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFA  229 (373)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            47799999999999999999999999 8999988876643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=83.76  E-value=12  Score=37.88  Aligned_cols=88  Identities=18%  Similarity=0.097  Sum_probs=51.2

Q ss_pred             ecCCCHHHHHHH----HHhhhhcCCCEEEEEecC--C-----C---CCC-c-------------hhHHHHHHhhCCC-cE
Q 014691           30 IMGESVDKMVVD----MGKANASGADLVEIRLDG--L-----K---NFN-P-------------RENIKTLIKESPV-PT   80 (420)
Q Consensus        30 l~~~~~~e~~~~----~~~~~~~~~D~vElRlD~--l-----~---~~~-~-------------~~~l~~l~~~~~~-Pi   80 (420)
                      ++..++++++++    ++++.+.|.|.||+-.-+  |     .   +.. +             .+.++.+++.... | 
T Consensus       142 mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~-  220 (338)
T cd02933         142 LTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADR-  220 (338)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCc-
Confidence            444445544433    334556799999998765  1     1   110 0             1234444444433 5 


Q ss_pred             EEEeccCCC----CCCCCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 014691           81 LFTYRPIWE----GGQYDGDENERVDVLRLAMELGADYIDVEL  119 (420)
Q Consensus        81 I~T~R~~~e----GG~~~~~~~~~~~ll~~~~~~~~d~iDiEl  119 (420)
                       +++|-..+    |+.+..+.++..++.+.+.+.|+|||+|-.
T Consensus       221 -v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~  262 (338)
T cd02933         221 -VGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVE  262 (338)
T ss_pred             -eEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Confidence             45664422    233334667888899998888999999944

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=83.75  E-value=1.4  Score=45.01  Aligned_cols=33  Identities=27%  Similarity=0.473  Sum_probs=29.4

Q ss_pred             CCEEEEEccchHHHHHHHHHHhC-CC-eEEEEeCC
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRT  413 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~-g~-~i~v~nR~  413 (420)
                      ...|+|||+|-+|.+++|.|++. |. +|+|+.|.
T Consensus        30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~   64 (407)
T TIGR01373        30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG   64 (407)
T ss_pred             cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence            44699999999999999999985 86 99999985

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=83.69  E-value=1.6  Score=45.62  Aligned_cols=35  Identities=40%  Similarity=0.390  Sum_probs=32.0

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ..||+|+|||+|-+|--++..|..+|++|+++.|.
T Consensus       270 ~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~  304 (449)
T TIGR01316       270 YAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRR  304 (449)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeec
Confidence            35899999999999999999999999999999875

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12831 putative oxidoreductase; Provisional

Probab=83.68  E-value=1.5  Score=46.06  Aligned_cols=35  Identities=34%  Similarity=0.376  Sum_probs=31.8

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ..+|+|+|||+|-+|--++..|..+|++|+++.|.
T Consensus       279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~  313 (464)
T PRK12831        279 KVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRR  313 (464)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence            46899999999999999999999999999999874

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=83.67  E-value=10  Score=38.09  Aligned_cols=91  Identities=14%  Similarity=0.171  Sum_probs=63.0

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCC------------Cc---hhHHHHHHhhCCCcEEEEeccCCC
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNF------------NP---RENIKTLIKESPVPTLFTYRPIWE   89 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~------------~~---~~~l~~l~~~~~~PiI~T~R~~~e   89 (420)
                      -+.+-|.+.+.+++.+-++.+.+.|+|.||+-..+-...            ++   .+.++.+++..+.|+-+-+|-..+
T Consensus        66 p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~  145 (333)
T PRK11815         66 PVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGID  145 (333)
T ss_pred             cEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeC
Confidence            366899999999999988888788999999987763210            11   122344444457888777775444


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCcEEEEE
Q 014691           90 GGQYDGDENERVDVLRLAMELGADYIDVE  118 (420)
Q Consensus        90 GG~~~~~~~~~~~ll~~~~~~~~d~iDiE  118 (420)
                      +.   .+.++-.++.+.+.+.|+++|.|-
T Consensus       146 ~~---~t~~~~~~~~~~l~~aG~d~i~vh  171 (333)
T PRK11815        146 DQ---DSYEFLCDFVDTVAEAGCDTFIVH  171 (333)
T ss_pred             CC---cCHHHHHHHHHHHHHhCCCEEEEc
Confidence            32   233456677888888899999875

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]

Probab=83.63  E-value=29  Score=34.90  Aligned_cols=242  Identities=19%  Similarity=0.229  Sum_probs=123.6

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGAD  113 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d  113 (420)
                      |.+..+.|++++...|||+|=+-++...   ..+.+..+.++.++|++.-+--         +    .++...+++.|+|
T Consensus        34 Dv~aTv~QI~~L~~aG~dIVRvtv~~~e---~A~A~~~Ik~~~~vPLVaDiHf---------~----~rla~~~~~~g~~   97 (361)
T COG0821          34 DVEATVAQIKALERAGCDIVRVTVPDME---AAEALKEIKQRLNVPLVADIHF---------D----YRLALEAAECGVD   97 (361)
T ss_pred             cHHHHHHHHHHHHHcCCCEEEEecCCHH---HHHHHHHHHHhCCCCEEEEeec---------c----HHHHHHhhhcCcc
Confidence            5777888888888899999988877654   2457888888889999966431         1    1233333344444


Q ss_pred             EEEEEccc--ccchhHHHh-hcCCCCcEE-EEEccc----------CCCCCCH--HHHHHHHHHHHHcCCCEEEEEeecC
Q 014691          114 YIDVELQV--AREFNDSIR-GKKPEKCKV-IVSSHN----------YQYTPSV--EDLSNLVARIQASGADIVKFATTAL  177 (420)
Q Consensus       114 ~iDiEl~~--~~~~~~~l~-~~~~~~~ki-I~S~H~----------f~~tP~~--~el~~~~~~~~~~gaDivKia~~~~  177 (420)
                      -+=|-=..  .++.++.+. .++..++.| |.=.|=          ...||..  +......+.+.++|-+=+|+-+.+.
T Consensus        98 k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~K~S  177 (361)
T COG0821          98 KVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSVKAS  177 (361)
T ss_pred             eEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC
Confidence            43332111  111122222 122223322 221110          0224421  2234445566678888889999999


Q ss_pred             CHHHHHHHHHHhcc-CCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhccccCCCceEE
Q 014691          178 DITDVARVFQITVH-SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVF  256 (420)
Q Consensus       178 s~~D~~~ll~~~~~-~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~~~~~~~~~~  256 (420)
                      +..+..+..+.+.. .+.|+ .++.-+.|..            +.+.+.    |+      --+-.++. .+ -++|-++
T Consensus       178 dv~~~v~aYr~lA~~~dyPL-HLGvTEAG~~------------~~G~Vk----Sa------~alg~LL~-eG-IGDTIRV  232 (361)
T COG0821         178 DVQLMVAAYRLLAKRCDYPL-HLGVTEAGMG------------FKGIVK----SA------AALGALLS-EG-IGDTIRV  232 (361)
T ss_pred             CHHHHHHHHHHHHHhcCCCc-ccceecccCc------------ccceeh----HH------HHHHHHHH-hc-CCceEEE
Confidence            99888877776543 35553 2222222210            111111    11      01111121 22 3467777


Q ss_pred             eeeccCccccccHHHHHHHHHHcCCCc---eeecccc-----ccHHHHHHHhcCCCCCEEEEcccchHHHHhhh
Q 014691          257 GIIGKPVGHSKSPILYNEAFKSVGFNG---VFVHLLV-----DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCC  322 (420)
Q Consensus       257 ~v~G~pv~hS~SP~ihn~~f~~~gl~~---~y~~~~~-----~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~  322 (420)
                      -+-++|+..-   ..=...++.+|+..   .|...+.     -|+.+.++.+..   +=..+.+|.|..||.++
T Consensus       233 SLt~~P~~EV---~V~~eILqslglR~~~v~~iaCP~CGR~~~dv~~~~~~~~~---~~~~~~~pl~VAVMGCV  300 (361)
T COG0821         233 SLTADPVEEV---KVAQEILQSLGLRSRGVEVIACPTCGRTEFDVIQTLNEVEQ---RLEHLKTPLKVAVMGCV  300 (361)
T ss_pred             ecCCCchhhh---HHHHHHHHHhCccccCceEEECCCCCceeehHHHHHHHHHH---HhhccCCCceEEEEEeE
Confidence            7777774432   23466788888863   3554442     134333333311   11234567777666543

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=83.61  E-value=1.7  Score=44.52  Aligned_cols=34  Identities=26%  Similarity=0.440  Sum_probs=30.9

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      .+++++|+|+|.+|-.++..|.+.|++|+++.|.
T Consensus       143 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~  176 (396)
T PRK09754        143 PERSVVIVGAGTIGLELAASATQRRCKVTVIELA  176 (396)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence            3689999999999999999999999999999874

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=83.61  E-value=1.7  Score=46.51  Aligned_cols=40  Identities=28%  Similarity=0.428  Sum_probs=35.6

Q ss_pred             ccCCCEEEEEccch-HHHHHHHHHHhCCC-eEEEEeCChhhh
Q 014691          378 ALAGKLFVVIGAGG-AGKALAYGAKAKGA-RVVIANRTYENL  417 (420)
Q Consensus       378 ~~~~k~vlviGaGG-aara~~~aL~~~g~-~i~v~nR~~~ka  417 (420)
                      -+.||++||-|+|| .|+.++..+.+.+. +|.+++|++-+-
T Consensus       247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~  288 (588)
T COG1086         247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKL  288 (588)
T ss_pred             HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHH
Confidence            35799999999999 89999999999998 999999997653

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=83.59  E-value=37  Score=31.61  Aligned_cols=83  Identities=25%  Similarity=0.298  Sum_probs=50.1

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEE---EEecCCCCCCchhHHHHHHh--hCCCcEEEEeccCCCCCCCCCCHHHH
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGADLVE---IRLDGLKNFNPRENIKTLIK--ESPVPTLFTYRPIWEGGQYDGDENER  100 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D~vE---lRlD~l~~~~~~~~l~~l~~--~~~~PiI~T~R~~~eGG~~~~~~~~~  100 (420)
                      +..|..+-+---+..-+.   ..++|.+-   ++.+.+.....  .......  ..+.|+++.+..        .+.++.
T Consensus         3 ~~aPm~~~~~~~fR~l~~---~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~qi~g--------~~~~~~   69 (231)
T cd02801           3 ILAPMVGVTDLPFRLLCR---RYGADLVYTEMISAKALLRGNR--KRLRLLTRNPEERPLIVQLGG--------SDPETL   69 (231)
T ss_pred             EeCCCCCCcCHHHHHHHH---HHCCCEEEecCEEEhhhhhcCH--HHHHhhccCccCCCEEEEEcC--------CCHHHH
Confidence            444566655444444333   34688876   66665543221  1222222  347899999872        145677


Q ss_pred             HHHHHHHHHhCCcEEEEEccc
Q 014691          101 VDVLRLAMELGADYIDVELQV  121 (420)
Q Consensus       101 ~~ll~~~~~~~~d~iDiEl~~  121 (420)
                      .+..+.+.+.|+|.|||-...
T Consensus        70 ~~aa~~~~~aG~d~ieln~g~   90 (231)
T cd02801          70 AEAAKIVEELGADGIDLNMGC   90 (231)
T ss_pred             HHHHHHHHhcCCCEEEEeCCC
Confidence            777777777899999997655

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=83.54  E-value=1.7  Score=42.51  Aligned_cols=39  Identities=31%  Similarity=0.433  Sum_probs=33.2

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+.+++|.|+|++|.+++..+..+|++|+++.++.++.+
T Consensus       155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~  193 (319)
T cd08242         155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLA  193 (319)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHH
Confidence            467999999999999999999999998888887766543

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=83.50  E-value=41  Score=31.87  Aligned_cols=85  Identities=20%  Similarity=0.277  Sum_probs=56.2

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCC-----CCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCCCC
Q 014691           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLK-----NFNP-RENIKTLIKESPVPTLFTYRPIWEGGQYDG   95 (420)
Q Consensus        22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~-----~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~   95 (420)
                      .+.+|+-+|...|...+.+++++....|+|++=  +|-.+     ++.- ...++.+++.++.|+=+++=-        .
T Consensus         2 ~~~~iapSILsaD~~~l~~el~~~~~agad~iH--~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV--------~   71 (220)
T COG0036           2 KMMKIAPSILSADFARLGEELKALEAAGADLIH--IDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMV--------E   71 (220)
T ss_pred             CCceeeeehhhCCHhHHHHHHHHHHHcCCCEEE--EeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEec--------C
Confidence            456899999999999999999998888999975  45544     2211 246777777667777655431        1


Q ss_pred             CHHHHHHHHHHHHHhCCcEEEEEc
Q 014691           96 DENERVDVLRLAMELGADYIDVEL  119 (420)
Q Consensus        96 ~~~~~~~ll~~~~~~~~d~iDiEl  119 (420)
                      +++.|++   ..++.|++||-+=.
T Consensus        72 ~p~~~i~---~fa~agad~It~H~   92 (220)
T COG0036          72 NPDRYIE---AFAKAGADIITFHA   92 (220)
T ss_pred             CHHHHHH---HHHHhCCCEEEEEe
Confidence            3344444   44555677665533

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=83.48  E-value=2  Score=43.21  Aligned_cols=39  Identities=28%  Similarity=0.493  Sum_probs=33.7

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|.+++|+|+|++|.+++..+..+|+ +|+++.++.+|.+
T Consensus       184 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~  223 (365)
T cd08277         184 PGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFE  223 (365)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence            47899999999999999998889999 7999998876643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=83.44  E-value=42  Score=33.06  Aligned_cols=83  Identities=11%  Similarity=0.077  Sum_probs=53.4

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhc---CCCEEEEEecCCC-----CC-CchhHHH----HHHhhCCCcEEEEeccCCCCCC
Q 014691           26 ICVPIMGESVDKMVVDMGKANAS---GADLVEIRLDGLK-----NF-NPRENIK----TLIKESPVPTLFTYRPIWEGGQ   92 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~---~~D~vElRlD~l~-----~~-~~~~~l~----~l~~~~~~PiI~T~R~~~eGG~   92 (420)
                      +.++|.+. .++..+.++.....   ++|+||+=+=+=.     .+ .+.+.+.    .+++..++|+++-+|...    
T Consensus        94 vivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~----  168 (294)
T cd04741          94 FFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYT----  168 (294)
T ss_pred             EEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCC----
Confidence            55789998 89988888876554   6999999876422     11 1122333    333445899999998521    


Q ss_pred             CCCCHHHHHHHHHHHHHh--CCcEEE
Q 014691           93 YDGDENERVDVLRLAMEL--GADYID  116 (420)
Q Consensus        93 ~~~~~~~~~~ll~~~~~~--~~d~iD  116 (420)
                         +.++..++.+.+.+.  |++.|-
T Consensus       169 ---~~~~~~~~a~~l~~~~~G~~gi~  191 (294)
T cd04741         169 ---DPAQFDTLAEALNAFACPISFIT  191 (294)
T ss_pred             ---CHHHHHHHHHHHhccccCCcEEE
Confidence               334455666666666  677665

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PLN02697 lycopene epsilon cyclase

Probab=83.30  E-value=1.3  Score=47.42  Aligned_cols=32  Identities=38%  Similarity=0.387  Sum_probs=29.0

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ..|+|||+|.+|.+++++|++.|.+|.++.+.
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~  140 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD  140 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence            36999999999999999999999999998764

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=83.26  E-value=41  Score=32.80  Aligned_cols=140  Identities=21%  Similarity=0.173  Sum_probs=86.3

Q ss_pred             HHHHHHhhhhcCCCEEEEEecCCCCCCchhHHH---HHHh---hCCCcEEE--EeccCCCCCCCCCCHHHHHHHHHHHHH
Q 014691           38 MVVDMGKANASGADLVEIRLDGLKNFNPRENIK---TLIK---ESPVPTLF--TYRPIWEGGQYDGDENERVDVLRLAME  109 (420)
Q Consensus        38 ~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~---~l~~---~~~~PiI~--T~R~~~eGG~~~~~~~~~~~ll~~~~~  109 (420)
                      +..+.+++...|+|+|=.-+-.-.+.+ .++++   +++.   +..+|++.  ..|.+.-.-....+.+.--..-+.+.+
T Consensus        99 ~~~~ve~ai~lgadAV~~~Vy~Gse~e-~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaae  177 (265)
T COG1830          99 LVATVEDAIRLGADAVGATVYVGSETE-REMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAE  177 (265)
T ss_pred             eeeeHHHHHhCCCcEEEEEEecCCcch-HHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHH
Confidence            444556666789999999887666543 33444   3332   35899876  466543211122333322334557888


Q ss_pred             hCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCC---EEEEEeecCCHHHH
Q 014691          110 LGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGAD---IVKFATTALDITDV  182 (420)
Q Consensus       110 ~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaD---ivKia~~~~s~~D~  182 (420)
                      +|+|.|-+.+.-+.+-++++...  -++.||+|==  .++.+.+++.+......+.||-   +-+=++...+++-.
T Consensus       178 lGADIiK~~ytg~~e~F~~vv~~--~~vpVviaGG--~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m  249 (265)
T COG1830         178 LGADIIKTKYTGDPESFRRVVAA--CGVPVVIAGG--PKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAM  249 (265)
T ss_pred             hcCCeEeecCCCChHHHHHHHHh--CCCCEEEeCC--CCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHH
Confidence            99999999998877777777754  2489999842  3444567788888887776753   33333343444443

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=83.23  E-value=11  Score=37.51  Aligned_cols=148  Identities=13%  Similarity=0.181  Sum_probs=87.5

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCC----------C-CchhH----HHHHHhhC--CCcEEEEeccCC
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN----------F-NPREN----IKTLIKES--PVPTLFTYRPIW   88 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~----------~-~~~~~----l~~l~~~~--~~PiI~T~R~~~   88 (420)
                      +.+-|.+.+.+++..-++.+.+.|+|.||+-+-+-..          + ...+.    ++.+++..  ++|+-+-+|.  
T Consensus        65 ~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~--  142 (312)
T PRK10550         65 VRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL--  142 (312)
T ss_pred             EEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC--
Confidence            5588999999999988888888899999999988421          0 11122    33334444  3777666664  


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCC-CHHHHHHHHHHHHHcCC
Q 014691           89 EGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTP-SVEDLSNLVARIQASGA  167 (420)
Q Consensus        89 eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP-~~~el~~~~~~~~~~ga  167 (420)
                        | |. +.++..++.+.+.+.|+++|.|--..                +   . -.+++++ +++.+ ..+++.    .
T Consensus       143 --g-~~-~~~~~~~~a~~l~~~Gvd~i~Vh~Rt----------------~---~-~~y~g~~~~~~~i-~~ik~~----~  193 (312)
T PRK10550        143 --G-WD-SGERKFEIADAVQQAGATELVVHGRT----------------K---E-DGYRAEHINWQAI-GEIRQR----L  193 (312)
T ss_pred             --C-CC-CchHHHHHHHHHHhcCCCEEEECCCC----------------C---c-cCCCCCcccHHHH-HHHHhh----c
Confidence              2 22 22346788888888999999884221                1   0 0133343 45322 223322    1


Q ss_pred             CEEEEEe-ecCCHHHHHHHHHHhccCCCCEEEEecCCcchh
Q 014691          168 DIVKFAT-TALDITDVARVFQITVHSQVPIIGLVMGERGLI  207 (420)
Q Consensus       168 DivKia~-~~~s~~D~~~ll~~~~~~~~p~I~~~MG~~G~~  207 (420)
                      +|.=++. --.|.+|..++++   ......+.++-|-++.+
T Consensus       194 ~iPVi~nGdI~t~~da~~~l~---~~g~DgVmiGRg~l~nP  231 (312)
T PRK10550        194 TIPVIANGEIWDWQSAQQCMA---ITGCDAVMIGRGALNIP  231 (312)
T ss_pred             CCcEEEeCCcCCHHHHHHHHh---ccCCCEEEEcHHhHhCc
Confidence            3332332 2257778866654   34556777777765543

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=83.20  E-value=41  Score=32.54  Aligned_cols=110  Identities=21%  Similarity=0.191  Sum_probs=69.6

Q ss_pred             HHHHHHhhhhcCCCEEEEEec--CCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEE
Q 014691           38 MVVDMGKANASGADLVEIRLD--GLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYI  115 (420)
Q Consensus        38 ~~~~~~~~~~~~~D~vElRlD--~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~i  115 (420)
                      ...-++.+...||+++=+-.|  +|..  ..+.+..+++..++|+|.  +   +   |-.++  + + +..+...|+|+|
T Consensus        72 ~~~~A~~~~~~GA~aisvlte~~~f~g--~~~~l~~v~~~v~iPvl~--k---d---fi~~~--~-q-i~~a~~~GAD~V  137 (260)
T PRK00278         72 PVEIAKAYEAGGAACLSVLTDERFFQG--SLEYLRAARAAVSLPVLR--K---D---FIIDP--Y-Q-IYEARAAGADAI  137 (260)
T ss_pred             HHHHHHHHHhCCCeEEEEecccccCCC--CHHHHHHHHHhcCCCEEe--e---e---ecCCH--H-H-HHHHHHcCCCEE
Confidence            344455666779999955444  3432  245677777778999994  1   1   43333  2 2 556778899999


Q ss_pred             EEEccc-ccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEE
Q 014691          116 DVELQV-AREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVK  171 (420)
Q Consensus       116 DiEl~~-~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivK  171 (420)
                      =+.... ..+.++++. ..+.-+..+++-.|+.      +|+    +++.+.|+|++=
T Consensus       138 lLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~------~E~----~~A~~~gadiIg  185 (260)
T PRK00278        138 LLIVAALDDEQLKELLDYAHSLGLDVLVEVHDE------EEL----ERALKLGAPLIG  185 (260)
T ss_pred             EEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCH------HHH----HHHHHcCCCEEE
Confidence            887765 333444554 2345688889888863      333    446678999754

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=83.18  E-value=1.9  Score=42.73  Aligned_cols=38  Identities=32%  Similarity=0.405  Sum_probs=33.2

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      .+++++|.|+|+.|.+++..+...|++|+++.++.++.
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~  200 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKA  200 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHH
Confidence            46799999999999999999999999988898887654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=83.17  E-value=1.4  Score=48.38  Aligned_cols=31  Identities=35%  Similarity=0.468  Sum_probs=28.1

Q ss_pred             EEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       383 ~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      -|||||+|++|.+++..+++.|++|.|+...
T Consensus        52 DVlVIG~G~AGl~AAl~Aae~G~~VilveK~   82 (635)
T PLN00128         52 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL   82 (635)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCcEEEEEcC
Confidence            5999999999999999999999999988764

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=83.12  E-value=37  Score=34.32  Aligned_cols=96  Identities=16%  Similarity=0.169  Sum_probs=54.9

Q ss_pred             CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccc--------------hhHHHhhcCCC---CcE
Q 014691           76 SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVARE--------------FNDSIRGKKPE---KCK  138 (420)
Q Consensus        76 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~--------------~~~~l~~~~~~---~~k  138 (420)
                      .++|+|+.+=. ........+.+++.+..+.+-+ ++|++++-+.++..              +++.+......   +..
T Consensus       136 ~~~pvivsI~~-~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~P  213 (344)
T PRK05286        136 RGIPLGINIGK-NKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVP  213 (344)
T ss_pred             CCCcEEEEEec-CCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCc
Confidence            47899999832 1112223356788888888755 59999998866421              22222221110   245


Q ss_pred             EEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec
Q 014691          139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA  176 (420)
Q Consensus       139 iI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~  176 (420)
                      |++-.-.   ..+.+++.++.+.+.+.|+|.+-+.-..
T Consensus       214 V~vKlsp---~~~~~~~~~ia~~l~~~Gadgi~~~nt~  248 (344)
T PRK05286        214 LLVKIAP---DLSDEELDDIADLALEHGIDGVIATNTT  248 (344)
T ss_pred             eEEEeCC---CCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence            5554321   1123467777777777788877766543

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=83.11  E-value=1.7  Score=42.71  Aligned_cols=39  Identities=38%  Similarity=0.476  Sum_probs=33.2

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCe-EEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~-i~v~nR~~~ka~  418 (420)
                      .|.+++|+|+|++|++++..+...|++ |+++.++.++.+
T Consensus       159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~  198 (334)
T cd08234         159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLE  198 (334)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence            467999999999999999988999995 899988877653

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=83.03  E-value=1.5  Score=46.73  Aligned_cols=32  Identities=38%  Similarity=0.379  Sum_probs=28.8

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeC
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR  412 (420)
                      ...++|||+|.+|.++|..|+..|.++.|+.+
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~  242 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE  242 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence            46799999999999999999999998888764

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=82.94  E-value=1.9  Score=42.10  Aligned_cols=38  Identities=24%  Similarity=0.247  Sum_probs=33.1

Q ss_pred             CCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       381 ~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      +++++|+|+ |+.|.+++..+...|++|+++.++.++.+
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~  185 (326)
T cd08289         147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAAD  185 (326)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHH
Confidence            579999998 99999999999999999988888877644

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III

Probab=82.93  E-value=64  Score=33.61  Aligned_cols=202  Identities=15%  Similarity=0.115  Sum_probs=119.7

Q ss_pred             HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccc-c------cchhH----HHhh-cCCC
Q 014691           68 NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQV-A------REFND----SIRG-KKPE  135 (420)
Q Consensus        68 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~-~------~~~~~----~l~~-~~~~  135 (420)
                      -+++++...+.|++-|+=.++-|    .+.++..++......-|+|+|-=|-.. +      ++.++    .+.. .++.
T Consensus       134 G~R~~lgv~~RPL~gtiiKP~~G----lsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eT  209 (412)
T TIGR03326       134 GVREFLGIKDRPLLGTVPKPKVG----LSTEEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAET  209 (412)
T ss_pred             hHHHHhCCCCCceEEeecccccc----CChHHHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence            34555555689999997665443    367788888888888888987544222 1      11111    1111 1234


Q ss_pred             CcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCC---------------CEEEEe
Q 014691          136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV---------------PIIGLV  200 (420)
Q Consensus       136 ~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~---------------p~I~~~  200 (420)
                      +.+.+-+.+-   |-+.+|+.+..+.+.+.|++.+-+.+..-..+=+..|-+.....+.               |--.|+
T Consensus       210 G~~~~ya~Ni---T~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~ih~Hra~~ga~~~~~~~Gis  286 (412)
T TIGR03326       210 GERKEYLANI---TAPVREMERRAELVADLGGQYVMVDVVVCGWSALQYIRELTEDLGLAIHAHRAMHAAFTRNPKHGIS  286 (412)
T ss_pred             CCcceEEEEe---cCCHHHHHHHHHHHHHhCCCeEEEEeeccchHHHHHHHHhhccCCeEEEEcCCcccccccCCCCcCc
Confidence            5556655443   4446899999999999999999999998887776665543222223               333455


Q ss_pred             cCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhcccc--CCCceEEeeeccCccccccHHHHHHHHHH
Q 014691          201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQM--GPDTKVFGIIGKPVGHSKSPILYNEAFKS  278 (420)
Q Consensus       201 MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~~~--~~~~~~~~v~G~pv~hS~SP~ihn~~f~~  278 (420)
                      |-.+|++.|+++-   ..+.|.+.+.+  .-+  .+-++..++.+....  ..-.+.+-+.+.    ..+|..-...++.
T Consensus       287 ~~vl~kl~RLaGa---D~~~~~t~~~G--k~~--~~~~~~~~~~~~~~~~~~~~k~~~Pv~sG----G~~~~~vp~~~~~  355 (412)
T TIGR03326       287 MFALAKLYRLIGV---DQLHTGTAGVG--KLE--GGKEDTKQINDFLRQKWHHIKPVFPVSSG----GLHPGLVPPLIDA  355 (412)
T ss_pred             HHHHHHHHHHcCC---CeeeeCCCccC--CCC--CCHHHHHHHHHHHhCcccCCCCceEecCC----CCChhHHHHHHHh
Confidence            5556788888762   34455544111  112  234444545443211  111335555554    3567777788889


Q ss_pred             cCCCceeec
Q 014691          279 VGFNGVFVH  287 (420)
Q Consensus       279 ~gl~~~y~~  287 (420)
                      +|-|..|..
T Consensus       356 ~G~Dvil~~  364 (412)
T TIGR03326       356 LGKDLVIQA  364 (412)
T ss_pred             cCCceEEec
Confidence            998877664

Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.

>PLN02661 Putative thiazole synthesis

Probab=82.86  E-value=1.6  Score=44.38  Aligned_cols=34  Identities=29%  Similarity=0.489  Sum_probs=29.8

Q ss_pred             CCEEEEEccchHHHHHHHHHHhC-CCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAK-GARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~-g~~i~v~nR~~  414 (420)
                      ...|+|+|+|.+|-.+++.|++. |++|.|+.|+.
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~  126 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV  126 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence            34799999999999999999976 77999999864

>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria

Probab=82.86  E-value=57  Score=33.87  Aligned_cols=201  Identities=13%  Similarity=0.156  Sum_probs=117.2

Q ss_pred             HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEE-ccccc------chh----HHHhh-cCCC
Q 014691           68 NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVE-LQVAR------EFN----DSIRG-KKPE  135 (420)
Q Consensus        68 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE-l~~~~------~~~----~~l~~-~~~~  135 (420)
                      -++.++...+.|+|-|+=.++-|    .+.++..++......-|+|+|-=| .-.++      +-+    +.+.. .+..
T Consensus       133 G~R~llgv~~RPLigtiiKP~~G----lsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eT  208 (406)
T cd08207         133 GTRRLTGVEDRPLIGTIIKPSVG----LTPEETAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRT  208 (406)
T ss_pred             hHHHHhCCCCCceEEEecccccC----CCHHHHHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhh
Confidence            35555555689999997765443    367788888888887788876433 32221      111    11111 2334


Q ss_pred             CcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhcc------------CCCCEEEEecCC
Q 014691          136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVH------------SQVPIIGLVMGE  203 (420)
Q Consensus       136 ~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~------------~~~p~I~~~MG~  203 (420)
                      +.+.+-+.+.   |-+.+|+.+..+.+.+.|++++-+.+..-...=+..|-+....            ...|--.|+|-.
T Consensus       209 G~~~~y~~Ni---T~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~l~IhaHra~~ga~~r~p~~Gis~~v  285 (406)
T cd08207         209 GRKVMYAFNI---TDDIDEMRRNHDLVVEAGGTCVMVSLNSVGLSGLAALRRHSQLPIHGHRNGWGMLTRSPALGISFQA  285 (406)
T ss_pred             CCcceEEEec---CCCHHHHHHHHHHHHHhCCCeEEEeccccchHHHHHHHhcCCceEEECCCcceecccCCCCCCcHHH
Confidence            5566655443   4457899999999999999999999998777766555542110            022444555556


Q ss_pred             cchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhccc--cCC-CceEEeeeccCccccccHHHHHHHHHHcC
Q 014691          204 RGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQ--MGP-DTKVFGIIGKPVGHSKSPILYNEAFKSVG  280 (420)
Q Consensus       204 ~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~~--~~~-~~~~~~v~G~pv~hS~SP~ihn~~f~~~g  280 (420)
                      +|++.|+++-   ..+.|.+....  -.-   +-++..++.+...  ... ....+-+.+..    .+|..-...++.+|
T Consensus       286 l~kl~RLaGa---D~~~~~~~~Gk--f~~---~~~~~~~~~~~~~~p~~~~~k~~~Pv~sgG----~~~~~vp~~~~~~G  353 (406)
T cd08207         286 YQKLWRLAGV---DHLHVNGLASK--FWE---SDDSVIESARACLTPLGGPDDAAMPVFSSG----QWGGQAPPTYRRLG  353 (406)
T ss_pred             HHHHHHHcCC---CccccCCCcCC--cCC---CcHHHHHHHHHHhCchhccCCCeeEeccCC----CCHhHHHHHHHHhC
Confidence            7888888763   33444444321  111   2233333333211  111 23456666554    46666777788898


Q ss_pred             -CCceeec
Q 014691          281 -FNGVFVH  287 (420)
Q Consensus       281 -l~~~y~~  287 (420)
                       .|..|..
T Consensus       354 ~~Dvi~~a  361 (406)
T cd08207         354 SVDLLYLA  361 (406)
T ss_pred             CCceEEec
Confidence             5877763

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=82.81  E-value=1.5  Score=46.07  Aligned_cols=38  Identities=24%  Similarity=0.324  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..++||+|+|||+|-.|.-++..|...+.+|+++.|..
T Consensus       200 ~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        200 DPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             cccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            34689999999999999999999998877999998853

>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional

Probab=82.68  E-value=28  Score=36.61  Aligned_cols=158  Identities=22%  Similarity=0.328  Sum_probs=88.3

Q ss_pred             CCcEEEEeecCC-CHHHHHHHHHhh-----hhcC----CCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCC
Q 014691           22 NPTLICVPIMGE-SVDKMVVDMGKA-----NASG----ADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGG   91 (420)
Q Consensus        22 ~~~~icv~l~~~-~~~e~~~~~~~~-----~~~~----~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG   91 (420)
                      |.|.|++-|... +.+++...++..     ...|    +|+|-+|...-+...-...++.+.+..+.|+.+--       
T Consensus        90 np~~Ia~eI~D~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~~dvPLSIDT-------  162 (450)
T PRK04165         90 NPTGIAVDVSDTMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDPEKFAKAVKKVAETTDLPLILCS-------  162 (450)
T ss_pred             CCCEEEEEEeCCCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEeC-------
Confidence            456788777332 236666666655     3445    99999998764210012334455444688976542       


Q ss_pred             CCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 014691           92 QYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIV  170 (420)
Q Consensus        92 ~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDiv  170 (420)
                         .+    -+.++++++.+++.+-+=.....+-.+.+.. .+..+..+|++.-      +.+.+.+..+++.+.|-  -
T Consensus       163 ---~d----pevleaAleagad~~plI~Sat~dN~~~m~~la~~yg~pvVv~~~------dl~~L~~lv~~~~~~GI--~  227 (450)
T PRK04165        163 ---ED----PAVLKAALEVVADRKPLLYAATKENYEEMAELAKEYNCPLVVKAP------NLEELKELVEKLQAAGI--K  227 (450)
T ss_pred             ---CC----HHHHHHHHHhcCCCCceEEecCcchHHHHHHHHHHcCCcEEEEch------hHHHHHHHHHHHHHcCC--C
Confidence               12    2477788887765221112222222233321 2234677887532      26778888999998885  5


Q ss_pred             EEEeec------CCHHHHHHHHHH-----hccCCCCEEEEec
Q 014691          171 KFATTA------LDITDVARVFQI-----TVHSQVPIIGLVM  201 (420)
Q Consensus       171 Kia~~~------~s~~D~~~ll~~-----~~~~~~p~I~~~M  201 (420)
                      ++..-|      ++.++..++-++     .+....|+|+...
T Consensus       228 dIILDPg~ggf~ksl~~~~~iRr~Al~~~~~~lgyPil~~~s  269 (450)
T PRK04165        228 DLVLDPGTENIKETLDDFVQIRRAAIKKGDRPLGYPIIAFPI  269 (450)
T ss_pred             cEEECCCCchhhhhHHHHHHHHhhhhhcccccCCCCEEEcch
Confidence            777666      344555444333     1223789888554

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=82.66  E-value=1.7  Score=44.42  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=31.1

Q ss_pred             CCEEEEEc-cchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviG-aGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+++.||| .|.+|++++.+|...|.+|++++|+.
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            47899999 89999999999999999999999863

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=82.57  E-value=2  Score=41.83  Aligned_cols=39  Identities=44%  Similarity=0.572  Sum_probs=33.3

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+.+++|.|+ |+.|++++..+...|++|+.+.|+.++.+
T Consensus       162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~  201 (332)
T cd08259         162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLK  201 (332)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence            4678999997 88999999999999998888888876644

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=82.55  E-value=2.1  Score=41.94  Aligned_cols=39  Identities=33%  Similarity=0.459  Sum_probs=32.6

Q ss_pred             CCCEEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviG-aGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|.+++|.| +|++|.+++..+...|++|+.+.++.++.+
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~  182 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVA  182 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            478999999 599999998888889999888888776643

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=82.54  E-value=2.3  Score=42.38  Aligned_cols=39  Identities=26%  Similarity=0.440  Sum_probs=34.3

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++++|.|+|+.|.+++..+..+|+ +|+++.++.++.+
T Consensus       172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~  211 (351)
T cd08233         172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRE  211 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            47899999999999999999999999 8999988877654

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=82.48  E-value=2.5  Score=43.51  Aligned_cols=53  Identities=28%  Similarity=0.391  Sum_probs=40.2

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ++|...+.++.+..       .+.+++|++|.|-|.|-+|+-++.-|.+.|++|+.++-+
T Consensus       187 g~Gv~~~~~~a~~~-------~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds  239 (411)
T COG0334         187 GYGVFYAIREALKA-------LGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDS  239 (411)
T ss_pred             ceehHHHHHHHHHH-------cCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcC
Confidence            55666665544332       124589999999999999999999999999987776644

>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]

Probab=82.42  E-value=1.2  Score=44.29  Aligned_cols=33  Identities=27%  Similarity=0.373  Sum_probs=29.4

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeC
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR  412 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR  412 (420)
                      .+.++|||||||-|-.+...|+..|+ ++.|++-
T Consensus        39 ~~~kiLviGAGGLGCElLKnLal~gF~~~~viDm   72 (422)
T KOG2015|consen   39 QDCKILVIGAGGLGCELLKNLALSGFRQLHVIDM   72 (422)
T ss_pred             hhCcEEEEccCcccHHHHHhHHhhccceeEEEee
Confidence            35789999999999999999999998 8888774

>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon

Probab=82.41  E-value=2.1  Score=43.79  Aligned_cols=228  Identities=19%  Similarity=0.239  Sum_probs=105.3

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEec-----cCCCCCCCCCCHHHH
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYR-----PIWEGGQYDGDENER  100 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R-----~~~eGG~~~~~~~~~  100 (420)
                      |-++-...++++-++.++.+.+.|+|.|   .|+=..-+..+.-+.+++.+++|+= |+-     ....|.....++++-
T Consensus        66 IGtS~~~~d~~~E~~K~~~A~~~GADtv---MDLStggdl~~iR~~il~~~~vpvG-TVPiYqa~~~~~~~~~~~t~d~~  141 (420)
T PF01964_consen   66 IGTSSDYSDIEEELEKLKIAEKAGADTV---MDLSTGGDLDEIRRAILENSPVPVG-TVPIYQAAIRKGGSIVDMTEDDF  141 (420)
T ss_dssp             E--------HHHHHHHHHHHHHTT-SEE---EE---STTHHHHHHHHHHT-SS-EE-E-HHHHHHHHTTT-GGG--HHHH
T ss_pred             ecCCCCCCCHHHHHHHHHHHHHhCCCEE---EEcCCCCCHHHHHHHHHHhCCCccc-cchHHHHHHHhCCChhhCCHHHH
Confidence            3344455567777888888889999987   5654332222222345566777763 321     224445567788999


Q ss_pred             HHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEc----------ccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 014691          101 VDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSS----------HNYQYTPSVEDLSNLVARIQASGADIV  170 (420)
Q Consensus       101 ~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~----------H~f~~tP~~~el~~~~~~~~~~gaDiv  170 (420)
                      ++.++.-++.|+||+.|=-....+.++.+..  .++.-=|+|.          |+-++.|=.+...++++-++++.. ..
T Consensus       142 ~~~ie~qa~~GVDfmtiH~git~~~~~~~~~--~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~yDV-tL  218 (420)
T PF01964_consen  142 FDVIEKQAKDGVDFMTIHCGITRETLERLKK--SGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKEYDV-TL  218 (420)
T ss_dssp             HHHHHHHHHHT--EEEE-TT--GGGGGGGT----TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTTTT--EE
T ss_pred             HHHHHHHHHcCCCEEEEccchhHHHHHHHhh--hccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHHhCe-eE
Confidence            9999999999999999988777777666642  2333346675          667788855566666666665541 11


Q ss_pred             EEE--eecCCHHHH---HHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691          171 KFA--TTALDITDV---ARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (420)
Q Consensus       171 Kia--~~~~s~~D~---~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~  245 (420)
                      -+.  ..|-+..|.   ..+.++.          -.|++-+-.|=.+-   .     .+-++    ||.+++.++..-.+
T Consensus       219 SLGDglRPG~i~Da~D~aQi~EL~----------~lgeL~~rA~e~gV---Q-----vMVEG----PGHVPl~~I~~nv~  276 (420)
T PF01964_consen  219 SLGDGLRPGCIADATDRAQIQELI----------ILGELVKRAREAGV---Q-----VMVEG----PGHVPLNQIEANVK  276 (420)
T ss_dssp             EE--TT--SSGGGTT-HHHHHHHH----------HHHHHHHHHHHTT----------EEEEE-----SB--GGGHHHHHH
T ss_pred             ecccccCCCCcCCCCcHHHHHHHH----------HHHHHHHHHHHCCC---e-----EEeeC----CCCCCHHHHHHHHH
Confidence            221  233333333   2223221          12333333333221   1     12233    99999998887666


Q ss_pred             cc-ccCCCceEEeeeccCccc------cccHHHHHHHHHHcCCCc
Q 014691          246 FR-QMGPDTKVFGIIGKPVGH------SKSPILYNEAFKSVGFNG  283 (420)
Q Consensus       246 ~~-~~~~~~~~~~v~G~pv~h------S~SP~ihn~~f~~~gl~~  283 (420)
                      +. ++. +-.-|+++|-=++-      -.|-.|=-+.....|-|.
T Consensus       277 lqK~lc-~~APfYvLGPLvTDiapGYDHIt~AIGgAiaa~~GAdf  320 (420)
T PF01964_consen  277 LQKRLC-HGAPFYVLGPLVTDIAPGYDHITSAIGGAIAAAAGADF  320 (420)
T ss_dssp             HHHHHT-TT--EEEE--BS-SS-TT-HHHHHHHHHHHHHHHT-SE
T ss_pred             HHHHhc-CCCCcccCCccccccCCChhHHHHHHHHHHHHHcCcce
Confidence            43 232 23468888843322      134466666777778775

ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=82.32  E-value=2.1  Score=42.44  Aligned_cols=39  Identities=33%  Similarity=0.492  Sum_probs=33.7

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ++++++|.|+|++|.+++..+...|++|+++.++.++.+
T Consensus       165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~  203 (345)
T cd08260         165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLE  203 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence            478999999999999999999999999888888776643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PTZ00058 glutathione reductase; Provisional

Probab=82.28  E-value=1.7  Score=47.02  Aligned_cols=31  Identities=32%  Similarity=0.488  Sum_probs=29.1

Q ss_pred             EEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       383 ~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      .++|||+|.+|.+++..++++|.+|.++.+.
T Consensus        50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk~   80 (561)
T PTZ00058         50 DLIVIGGGSGGMAAARRAARNKAKVALVEKD   80 (561)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence            5999999999999999999999999999875

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=82.18  E-value=10  Score=37.63  Aligned_cols=87  Identities=21%  Similarity=0.240  Sum_probs=52.3

Q ss_pred             ecCCCHHHHHHHH----HhhhhcCCCEEEEEec--CC-----CC---C-Cc-------------hhHHHHHHhhC--CCc
Q 014691           30 IMGESVDKMVVDM----GKANASGADLVEIRLD--GL-----KN---F-NP-------------RENIKTLIKES--PVP   79 (420)
Q Consensus        30 l~~~~~~e~~~~~----~~~~~~~~D~vElRlD--~l-----~~---~-~~-------------~~~l~~l~~~~--~~P   79 (420)
                      ++..++++++++.    +++.+.|.|.||+-.-  ||     ..   . .+             .+.++.+++..  +.|
T Consensus       131 mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~  210 (327)
T cd02803         131 MTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFP  210 (327)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCce
Confidence            4445555554443    3445679999999874  22     11   0 00             12344555544  556


Q ss_pred             EEEEeccC--CCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 014691           80 TLFTYRPI--WEGGQYDGDENERVDVLRLAMELGADYIDVEL  119 (420)
Q Consensus        80 iI~T~R~~--~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl  119 (420)
                      +.+-++..  .++|   .+.++..++++.+.+.|+|||+|--
T Consensus       211 i~vris~~~~~~~g---~~~~e~~~la~~l~~~G~d~i~vs~  249 (327)
T cd02803         211 VGVRLSADDFVPGG---LTLEEAIEIAKALEEAGVDALHVSG  249 (327)
T ss_pred             EEEEechhccCCCC---CCHHHHHHHHHHHHHcCCCEEEeCC
Confidence            66665532  2233   3567888899999999999998754

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=82.10  E-value=1.6  Score=47.87  Aligned_cols=31  Identities=26%  Similarity=0.202  Sum_probs=27.8

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeC
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR  412 (420)
                      ..|||||+|++|.+++..+++.|++|.|+..
T Consensus        36 ~DVlVVG~G~AGl~AAi~Aae~G~~VilieK   66 (640)
T PRK07573         36 FDVIVVGTGLAGASAAATLGELGYNVKVFCY   66 (640)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEec
Confidence            3699999999999999999999999888864

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=82.10  E-value=3.7  Score=42.32  Aligned_cols=56  Identities=25%  Similarity=0.293  Sum_probs=41.6

Q ss_pred             ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEcc-----------------chHHHHHHHHHHhCCCeEEEEeCC
Q 014691          351 NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-----------------GGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       351 NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGa-----------------GGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      --+..-++..+.+.+..        +.+++||+++|-|.                 |.+|.+++.++...|++|+++.+.
T Consensus       163 ~~~~~~i~~~v~~~~~~--------~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~  234 (390)
T TIGR00521       163 LAEPETIVKAAEREFSP--------KEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGP  234 (390)
T ss_pred             CCCHHHHHHHHHHHHhh--------ccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCC
Confidence            34455566666555531        13588999999887                 569999999999999999888765


Q ss_pred             h
Q 014691          414 Y  414 (420)
Q Consensus       414 ~  414 (420)
                      .
T Consensus       235 ~  235 (390)
T TIGR00521       235 V  235 (390)
T ss_pred             C
Confidence            3

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PRK13748 putative mercuric reductase; Provisional

Probab=82.01  E-value=1.8  Score=46.49  Aligned_cols=32  Identities=44%  Similarity=0.566  Sum_probs=30.0

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ..++|||+|.+|.+++..|+++|.+|.|++|.
T Consensus        99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~  130 (561)
T PRK13748         99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERG  130 (561)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence            47999999999999999999999999999985

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=81.99  E-value=2  Score=42.34  Aligned_cols=39  Identities=36%  Similarity=0.493  Sum_probs=33.3

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKG-ARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g-~~i~v~nR~~~ka~  418 (420)
                      .+++++|.|+|++|.+++..+...| ++|+.+.++.++.+
T Consensus       167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~  206 (340)
T cd05284         167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALK  206 (340)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHH
Confidence            4789999999999999999888999 58888888876643

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=81.97  E-value=2.1  Score=43.51  Aligned_cols=38  Identities=18%  Similarity=0.173  Sum_probs=32.7

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..-+++++||.|+ |-.|++++..|.+.|.+|+.++|..
T Consensus        17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         17 WPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            3446799999997 7799999999999999999998753

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=81.96  E-value=1.6  Score=50.37  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=32.0

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      +...+|||+|+||.|-.++..|+..|+ +|+|++-+
T Consensus        22 L~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d   57 (1008)
T TIGR01408        22 MAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTE   57 (1008)
T ss_pred             HhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            456789999999999999999999999 99999865

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=81.78  E-value=2.2  Score=42.90  Aligned_cols=37  Identities=27%  Similarity=0.319  Sum_probs=31.6

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      .|.+++|+|+|++|.+++..+...|++++++.++.++
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~  216 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKK  216 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            4789999999999999999889999987777776654

>PLN02487 zeta-carotene desaturase

Probab=81.77  E-value=2  Score=46.58  Aligned_cols=34  Identities=29%  Similarity=0.246  Sum_probs=30.8

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      +++|+|||+|-+|-++++.|.+.|.+|+|+.+..
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~  108 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRP  108 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCC
Confidence            3599999999999999999999999999998754

>PLN02712 arogenate dehydrogenase

Probab=81.72  E-value=2.9  Score=46.12  Aligned_cols=36  Identities=25%  Similarity=0.325  Sum_probs=32.4

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      +.+++.|||.|.+|++++.+|...|.+|++++|+..
T Consensus        51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~   86 (667)
T PLN02712         51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDH   86 (667)
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            446899999999999999999999999999999854

>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=81.68  E-value=52  Score=33.31  Aligned_cols=168  Identities=12%  Similarity=0.110  Sum_probs=0.0

Q ss_pred             eecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCC--CCCCCCCCHHHHHHHHHH
Q 014691           29 PIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIW--EGGQYDGDENERVDVLRL  106 (420)
Q Consensus        29 ~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~--eGG~~~~~~~~~~~ll~~  106 (420)
                      +.+...+++++..+.+.+..++|.|=+---|       -..+.+.+..+.++|+++-...  .--..+.++..-.--.+.
T Consensus        42 ~~~~~~l~~~K~lv~~~l~~~asaILld~~y-------G~~a~~~~~~~~GLil~~e~tg~d~t~~gr~~~~~~~~sve~  114 (340)
T PRK12858         42 EASYTDLVDFKLAVSEALTPYASAILLDPEY-------GLPAAKVRDPNCGLLLSYEKTGYDATAPGRLPDLLDNWSVRR  114 (340)
T ss_pred             CcchhhHHHHHHHHHHHHhhCCCEEEEcccc-------ChhhhcccCCCCCeEEEecccccccCCCCCCccccccccHHH


Q ss_pred             HHHhCCcEEEEEcccccc-----------hhHHHh-hcCCCCcEEEE---EcccCCCCCCH--------HHHHHHHHHHH
Q 014691          107 AMELGADYIDVELQVARE-----------FNDSIR-GKKPEKCKVIV---SSHNYQYTPSV--------EDLSNLVARIQ  163 (420)
Q Consensus       107 ~~~~~~d~iDiEl~~~~~-----------~~~~l~-~~~~~~~kiI~---S~H~f~~tP~~--------~el~~~~~~~~  163 (420)
                      +.++|+|.|-+=+....+           .+.++. ..++.+..+++   +|=.-....+.        +-+....+...
T Consensus       115 a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~  194 (340)
T PRK12858        115 IKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFS  194 (340)
T ss_pred             HHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHh


Q ss_pred             H--cCCCEEEEEeecC--------------CHHHHHHHHHHhccC-CCCEEEEecCC
Q 014691          164 A--SGADIVKFATTAL--------------DITDVARVFQITVHS-QVPIIGLVMGE  203 (420)
Q Consensus       164 ~--~gaDivKia~~~~--------------s~~D~~~ll~~~~~~-~~p~I~~~MG~  203 (420)
                      +  +|+||+|+-+..+              +.++....++-.... +.|+|..+=|.
T Consensus       195 ~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~  251 (340)
T PRK12858        195 KPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV  251 (340)
T ss_pred             hhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC

>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed

Probab=81.60  E-value=73  Score=33.73  Aligned_cols=201  Identities=15%  Similarity=0.121  Sum_probs=116.6

Q ss_pred             HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccc-cc------chhH----HHhh-cCCC
Q 014691           68 NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQV-AR------EFND----SIRG-KKPE  135 (420)
Q Consensus        68 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~-~~------~~~~----~l~~-~~~~  135 (420)
                      -++.++...+.|++-|+=.+..|    .+.++..++....+.-|+|+|-=+-.. ++      +.+.    .+.. ....
T Consensus       150 GiR~~lgv~~RPL~gtiiKP~~G----Lsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eT  225 (468)
T PRK04208        150 VERERLDKYGRPLLGTTPKPKLG----LSAKNYGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAET  225 (468)
T ss_pred             hHHHHhCCCCCceEEEeeccccC----CCHHHHHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhh
Confidence            45555555689999997665442    367788888888887788887544222 11      1111    1111 2234


Q ss_pred             CcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCC---------------CEEEEe
Q 014691          136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV---------------PIIGLV  200 (420)
Q Consensus       136 ~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~---------------p~I~~~  200 (420)
                      +.+.+-+.+-.  .++.+|+.+..+.+.+.|++++-+.+......=+..|-+.....+.               |--.|+
T Consensus       226 G~~k~y~~NiT--~~~~~em~~ra~~~~e~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~IhaHrA~~ga~~r~~~~Gis  303 (468)
T PRK04208        226 GERKGHYLNVT--APTMEEMYKRAEFAKELGSPIVMIDVVTAGWTALQSLREWCRDNGLALHAHRAMHAAFTRNPNHGIS  303 (468)
T ss_pred             CCcceEEEecC--CCCHHHHHHHHHHHHHhCCCEEEEeccccccHHHHHHHHhhhcCCcEEEecCCcccccccCcCCCCC
Confidence            44555554433  2236899999999999999999999998887776665553222222               334555


Q ss_pred             cCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhccc-----------------cCCCceEEeeeccCc
Q 014691          201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQ-----------------MGPDTKVFGIIGKPV  263 (420)
Q Consensus       201 MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~~-----------------~~~~~~~~~v~G~pv  263 (420)
                      |-.+|++.|+++-   ..+.|.+....   -++  +-++..++.+...                 ...-.+.+-+.+.. 
T Consensus       304 ~~vl~Kl~RLaGa---D~ih~~t~~Gk---~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~k~~~Pv~SGG-  374 (468)
T PRK04208        304 FRVLAKLLRLIGV---DHLHTGTVVGK---LEG--DRAEVLGYYDILREDFVPEDRSRGIFFDQDWGSIKPVFPVASGG-  374 (468)
T ss_pred             HHHHHHHHHHcCC---CccccCCccCC---ccC--CHHHHHHHHHHHhhhhccccccccccccccccCCCCceEecCCC-
Confidence            5567888888763   33444444321   122  2333333333110                 01112344455543 


Q ss_pred             cccccHHHHHHHHHHcCCCceee
Q 014691          264 GHSKSPILYNEAFKSVGFNGVFV  286 (420)
Q Consensus       264 ~hS~SP~ihn~~f~~~gl~~~y~  286 (420)
                         .+|..-...++.+|-|..|.
T Consensus       375 ---~~~g~vp~~~~~~G~Dvil~  394 (468)
T PRK04208        375 ---IHPGHMPALLDIFGDDVVLQ  394 (468)
T ss_pred             ---CChhHHHHHHHHhCCceEEe
Confidence               45666677788899776655

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=81.59  E-value=2.1  Score=49.24  Aligned_cols=37  Identities=32%  Similarity=0.392  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .-.||+|.|||+|.+|.|++-.|...|..|+|+.|..
T Consensus      1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred             cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence            3469999999999999999999999999999999963

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=81.52  E-value=1.8  Score=46.07  Aligned_cols=32  Identities=34%  Similarity=0.388  Sum_probs=28.7

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEe
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIAN  411 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~n  411 (420)
                      ....++|||+|.+|-+++..|+..|.+++|+.
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~  242 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVA  242 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence            34689999999999999999999999888875

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=81.51  E-value=1.7  Score=50.20  Aligned_cols=34  Identities=38%  Similarity=0.479  Sum_probs=30.8

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+.|+|||+|.+|.+++..++..|.+|+|++++.
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~  196 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQP  196 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            3579999999999999999999999999998763

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=81.41  E-value=1.9  Score=47.30  Aligned_cols=32  Identities=31%  Similarity=0.542  Sum_probs=29.9

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      -.|+|||+|-+|.++++.|+..|.+|.|+.|.
T Consensus        72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~  103 (627)
T PLN02464         72 LDVLVVGGGATGAGVALDAATRGLRVGLVERE  103 (627)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            35999999999999999999999999999986

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=81.40  E-value=2  Score=43.26  Aligned_cols=39  Identities=21%  Similarity=0.286  Sum_probs=34.2

Q ss_pred             CCEEEEEccchHHHHHHHHHHhC-CC-eEEEEeCChhhhhc
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYENLQR  419 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~-g~-~i~v~nR~~~ka~~  419 (420)
                      -+.+.|||+|..|+.-+.++... ++ +|.|++|+++++++
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~  170 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEA  170 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHH
Confidence            36899999999999999998755 67 99999999998875

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=81.31  E-value=60  Score=32.18  Aligned_cols=119  Identities=17%  Similarity=0.247  Sum_probs=76.2

Q ss_pred             HHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccc---------------cchhHHHh---
Q 014691           69 IKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVA---------------REFNDSIR---  130 (420)
Q Consensus        69 l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~---------------~~~~~~l~---  130 (420)
                      ++++.+..++|+++-..+    |.-  +...-.+..+...+.|+..|-||-...               +++...|.   
T Consensus        70 ~~~I~~~~~iPviaD~d~----GyG--~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~  143 (292)
T PRK11320         70 VRRITDACDLPLLVDIDT----GFG--GAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAV  143 (292)
T ss_pred             HHHHHhccCCCEEEECCC----CCC--CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHH
Confidence            444445568999998764    542  555566778888999999999998531               22334444   


Q ss_pred             hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEE
Q 014691          131 GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPII  197 (420)
Q Consensus       131 ~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I  197 (420)
                      .++.+.-=+|+-.-|--.....+|..++.+.-.+.|||++=+-. +++.+++.++.+.+   +.|+.
T Consensus       144 ~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~-~~~~~~i~~~~~~~---~~Pl~  206 (292)
T PRK11320        144 DARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEA-MTELEMYRRFADAV---KVPIL  206 (292)
T ss_pred             HhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecC-CCCHHHHHHHHHhc---CCCEE
Confidence            22222224455555532344577888888888889999987754 57778876665543   45653

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=81.06  E-value=16  Score=35.91  Aligned_cols=89  Identities=22%  Similarity=0.247  Sum_probs=49.6

Q ss_pred             hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccccc---chhHHHhhcCCCCcEEEEE
Q 014691           66 RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR---EFNDSIRGKKPEKCKVIVS  142 (420)
Q Consensus        66 ~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~---~~~~~l~~~~~~~~kiI~S  142 (420)
                      .+.++.+++..++|+|--+|.-            |+.-.+.....|+|||| |-....   +++..+..  +.+..++. 
T Consensus        56 p~~I~~I~~~V~iPVig~~kig------------h~~Ea~~L~~~GvDiID-eTe~lrPade~~~~~K~--~f~vpfma-  119 (287)
T TIGR00343        56 PKMIKEIMDAVSIPVMAKVRIG------------HFVEAQILEALGVDYID-ESEVLTPADWTFHIDKK--KFKVPFVC-  119 (287)
T ss_pred             HHHHHHHHHhCCCCEEEEeecc------------HHHHHHHHHHcCCCEEE-ccCCCCcHHHHHHHHHH--HcCCCEEc-
Confidence            3568888888899999988841            23333445567999999 543322   22222211  11222222 


Q ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH
Q 014691          143 SHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI  179 (420)
Q Consensus       143 ~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~  179 (420)
                              +-.++.+-+.+. +.|||++.-...+-|.
T Consensus       120 --------d~~~l~EAlrai-~~GadmI~Tt~e~gTg  147 (287)
T TIGR00343       120 --------GARDLGEALRRI-NEGAAMIRTKGEAGTG  147 (287)
T ss_pred             --------cCCCHHHHHHHH-HCCCCEEeccccCCCc
Confidence                    122344444443 6799999766555554

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain

Probab=81.02  E-value=57  Score=31.82  Aligned_cols=141  Identities=15%  Similarity=0.104  Sum_probs=82.0

Q ss_pred             HHHHHHhCCcEEEEEcccccc---------------hh-HHHhhcCCCCcEEEEE------cccCCCCCCHHHHHHHHHH
Q 014691          104 LRLAMELGADYIDVELQVARE---------------FN-DSIRGKKPEKCKVIVS------SHNYQYTPSVEDLSNLVAR  161 (420)
Q Consensus       104 l~~~~~~~~d~iDiEl~~~~~---------------~~-~~l~~~~~~~~kiI~S------~H~f~~tP~~~el~~~~~~  161 (420)
                      ++++++.|++.|.+-...++.               .. +.+..++..+..+.++      ..+...+ +.+.+.+..++
T Consensus        79 v~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~-~~~~~~~~~~~  157 (274)
T cd07938          79 AERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV-PPERVAEVAER  157 (274)
T ss_pred             HHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC-CHHHHHHHHHH
Confidence            567888999999987655431               11 1122234456666432      2221122 56789999999


Q ss_pred             HHHcCCCEEEEEeec--CCHHHHHHHHHHhccC--CCCEEEEecCCcc--hhhhhhccccCCcccccccCCC--ccC---
Q 014691          162 IQASGADIVKFATTA--LDITDVARVFQITVHS--QVPIIGLVMGERG--LISRILCAKFGGFLTFGTLENG--IVS---  230 (420)
Q Consensus       162 ~~~~gaDivKia~~~--~s~~D~~~ll~~~~~~--~~p~I~~~MG~~G--~~SRi~~~~~Gs~ltf~~~~~~--~~s---  230 (420)
                      +.+.|+|.+.++=+.  -++.++.++.+.+...  +.|+-..+=-..|  ...=+..-.-|..+.=+++..-  .+-   
T Consensus       158 ~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~GlGgcpfa~e  237 (274)
T cd07938         158 LLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFAPG  237 (274)
T ss_pred             HHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCCCCCCC
Confidence            999999999999655  5688998888876543  3566554433333  2223333333433322333311  111   


Q ss_pred             CCCCCCHHhHHHHHh
Q 014691          231 APGQPTIKDLLDLYN  245 (420)
Q Consensus       231 APGQ~~~~~l~~~~~  245 (420)
                      .-|+++.+++...++
T Consensus       238 raGN~~~E~lv~~L~  252 (274)
T cd07938         238 ATGNVATEDLVYMLE  252 (274)
T ss_pred             ccCCcCHHHHHHHHH
Confidence            357888888776654

3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=80.85  E-value=2.6  Score=40.50  Aligned_cols=39  Identities=33%  Similarity=0.455  Sum_probs=33.7

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++++|.|+ |+.|.+++..+...|++|+++.++.++.+
T Consensus       144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~  183 (325)
T cd08253         144 AGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAE  183 (325)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            5789999995 89999999999999999999998876643

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>PRK08227 autoinducer 2 aldolase; Validated

Probab=80.81  E-value=22  Score=34.71  Aligned_cols=121  Identities=18%  Similarity=0.188  Sum_probs=73.7

Q ss_pred             HHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHH---HHh---hCCCcEEEEeccCCCCCCCCCCHHHHHH-HHHHHH
Q 014691           36 DKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKT---LIK---ESPVPTLFTYRPIWEGGQYDGDENERVD-VLRLAM  108 (420)
Q Consensus        36 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~---l~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~-ll~~~~  108 (420)
                      +.+...+++++..|||+|=.-+-.=.+.+ .+.++.   +.+   +..+|+|. +-  ..|.... ++...+. .-+.+.
T Consensus        94 ~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E-~~~l~~l~~v~~ea~~~G~Plla-~~--prG~~~~-~~~~~ia~aaRiaa  168 (264)
T PRK08227         94 EAVAVDMEDAVRLNACAVAAQVFIGSEYE-HQSIKNIIQLVDAGLRYGMPVMA-VT--AVGKDMV-RDARYFSLATRIAA  168 (264)
T ss_pred             ccceecHHHHHHCCCCEEEEEEecCCHHH-HHHHHHHHHHHHHHHHhCCcEEE-Ee--cCCCCcC-chHHHHHHHHHHHH
Confidence            44455566777889999988886554322 234443   333   35899987 22  3344433 3333433 356677


Q ss_pred             HhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCC
Q 014691          109 ELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGAD  168 (420)
Q Consensus       109 ~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaD  168 (420)
                      ++|+|.|-+.+.-  +-++++..  ...++|+++=  -.++ +.+++.+..++..+.||.
T Consensus       169 ELGADiVK~~y~~--~~f~~vv~--a~~vPVviaG--G~k~-~~~~~L~~v~~ai~aGa~  221 (264)
T PRK08227        169 EMGAQIIKTYYVE--EGFERITA--GCPVPIVIAG--GKKL-PERDALEMCYQAIDEGAS  221 (264)
T ss_pred             HHcCCEEecCCCH--HHHHHHHH--cCCCcEEEeC--CCCC-CHHHHHHHHHHHHHcCCc
Confidence            8999999988853  44555654  3567888762  1222 456777777777777764

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=80.80  E-value=2.2  Score=44.71  Aligned_cols=37  Identities=19%  Similarity=0.238  Sum_probs=33.3

Q ss_pred             CEEEEEcc-chHHHHHHHHHHhC-------CC--eEEEEeCChhhhh
Q 014691          382 KLFVVIGA-GGAGKALAYGAKAK-------GA--RVVIANRTYENLQ  418 (420)
Q Consensus       382 k~vlviGa-GGaara~~~aL~~~-------g~--~i~v~nR~~~ka~  418 (420)
                      -+|.|+|+ |.+|.+++|.|...       |.  ++.+++++.++++
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~  147 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALE  147 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhH
Confidence            37999999 99999999999988       76  8999999988876

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=80.73  E-value=2.9  Score=39.90  Aligned_cols=38  Identities=37%  Similarity=0.336  Sum_probs=33.0

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCe-EEEEeCChhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYENL  417 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~-i~v~nR~~~ka  417 (420)
                      +|.+++|.|+|++|.+++..+...|++ |+++.++.++.
T Consensus        97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~  135 (277)
T cd08255          97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARR  135 (277)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHH
Confidence            578999999999999999989999996 99988887664

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=80.53  E-value=1.2  Score=44.83  Aligned_cols=36  Identities=33%  Similarity=0.435  Sum_probs=31.3

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      .+++.+|||+|+||-|.-++..|+..|+ ++-|++-+
T Consensus        63 ~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~D   99 (427)
T KOG2017|consen   63 SLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYD   99 (427)
T ss_pred             ccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccc
Confidence            4667789999999999999999999998 88877744

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=80.45  E-value=65  Score=32.07  Aligned_cols=134  Identities=16%  Similarity=0.202  Sum_probs=85.8

Q ss_pred             EEeeeccCccccccHHHHHHHHHHcCCCceeecccc------ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHH
Q 014691          255 VFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV------DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTV  328 (420)
Q Consensus       255 ~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~------~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~  328 (420)
                      .+-+|=.|  .+|+-.=|..+...||-...|..-..      +.+++..+.+..-++.++-+=.|-...+..+...    
T Consensus        48 ~~~lF~~p--STRTR~SFe~A~~~LGg~~i~l~~~~~~~~kgEs~~Dta~vls~y~~D~iv~R~~~~~~~~~~a~~----  121 (305)
T PRK00856         48 VANLFFEP--STRTRLSFELAAKRLGADVINFSASTSSVSKGETLADTIRTLSAMGADAIVIRHPQSGAARLLAES----  121 (305)
T ss_pred             EEEEeccC--CcchHHHHHHHHHHcCCcEEEeCCCcccCCCCcCHHHHHHHHHhcCCCEEEEeCCChHHHHHHHHH----
Confidence            34466666  56777888999999999887764321      5788888877665577777776644432222221    


Q ss_pred             HHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccc---hHHHHHHHHHHhCCC
Q 014691          329 AKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG---GAGKALAYGAKAKGA  405 (420)
Q Consensus       329 A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaG---Gaara~~~aL~~~g~  405 (420)
                      + .+    .|++-. +| ..-+=|-...=+.++.+..           ..++|++++++|-+   .++++.+.++..+|+
T Consensus       122 ~-~v----PVINa~-~g-~~~HPtQ~LaDl~Ti~e~~-----------G~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~  183 (305)
T PRK00856        122 S-DV----PVINAG-DG-SHQHPTQALLDLLTIREEF-----------GRLEGLKVAIVGDIKHSRVARSNIQALTRLGA  183 (305)
T ss_pred             C-CC----CEEECC-CC-CCCCcHHHHHHHHHHHHHh-----------CCCCCCEEEEECCCCCCcHHHHHHHHHHHcCC
Confidence            1 11    233320 22 1233444444445555543           35789999999985   799999999999999


Q ss_pred             eEEEEeC
Q 014691          406 RVVIANR  412 (420)
Q Consensus       406 ~i~v~nR  412 (420)
                      +++++.-
T Consensus       184 ~~~~~~P  190 (305)
T PRK00856        184 EVRLIAP  190 (305)
T ss_pred             EEEEECC
Confidence            9888763

>TIGR02317 prpB methylisocitrate lyase

Probab=80.44  E-value=63  Score=31.90  Aligned_cols=118  Identities=17%  Similarity=0.239  Sum_probs=74.1

Q ss_pred             HHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccc---------------cchhHHHh---
Q 014691           69 IKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVA---------------REFNDSIR---  130 (420)
Q Consensus        69 l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~---------------~~~~~~l~---  130 (420)
                      ++.+.+..++|+++-+.+    |.-  +...-....+...+.|+..|-||-...               +++...|.   
T Consensus        65 ~~~I~~~~~iPviaD~d~----GyG--~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~  138 (285)
T TIGR02317        65 ARRITRVTDLPLLVDADT----GFG--EAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAV  138 (285)
T ss_pred             HHHHHhccCCCEEEECCC----CCC--CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHH
Confidence            444455678999988764    432  244455678888899999999998641               12334443   


Q ss_pred             hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCE
Q 014691          131 GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPI  196 (420)
Q Consensus       131 ~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~  196 (420)
                      .++...--+|.-.-|--.....+|..++.+.-.+.|||.+=+-. +++.+++.++-+.+   +.|+
T Consensus       139 ~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g-~~~~e~i~~~~~~i---~~Pl  200 (285)
T TIGR02317       139 DAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEA-LTSLEEFRQFAKAV---KVPL  200 (285)
T ss_pred             HhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHhc---CCCE
Confidence            22222224455555532334577888888888889999987743 56777776555443   4565

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=80.40  E-value=2.5  Score=41.67  Aligned_cols=39  Identities=41%  Similarity=0.612  Sum_probs=33.0

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|+++||.|+|++|.+++..+...|++++.+.++.++.+
T Consensus       159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~  197 (337)
T cd08261         159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLE  197 (337)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHH
Confidence            467999999999999999888899999888878766653

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=80.39  E-value=18  Score=36.27  Aligned_cols=84  Identities=15%  Similarity=0.217  Sum_probs=56.1

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCC------CCCc----hhHHHHHHhhCCCcEEEEeccCCCCCCCCC
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLK------NFNP----RENIKTLIKESPVPTLFTYRPIWEGGQYDG   95 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~------~~~~----~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~   95 (420)
                      +.+.|.+.+.++..+-++.+.+.|+|+||+-+-+-+      ..+.    .+.++.+++..++|+++-++.     .+  
T Consensus       104 vi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p-----~~--  176 (334)
T PRK07565        104 VIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSP-----YF--  176 (334)
T ss_pred             EEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCC-----Cc--
Confidence            456889999999888787777789999999553311      1111    123345555568999988873     11  


Q ss_pred             CHHHHHHHHHHHHHhCCcEEEEE
Q 014691           96 DENERVDVLRLAMELGADYIDVE  118 (420)
Q Consensus        96 ~~~~~~~ll~~~~~~~~d~iDiE  118 (420)
                      +  +..++.+.+.+.|+|+|.+=
T Consensus       177 ~--~~~~~a~~l~~~G~dgI~~~  197 (334)
T PRK07565        177 S--NLANMAKRLDAAGADGLVLF  197 (334)
T ss_pred             h--hHHHHHHHHHHcCCCeEEEE
Confidence            1  23456667778899999773

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=80.33  E-value=2.6  Score=43.77  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=30.9

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      +++++|||+|.+|-.++..|..+|.+|+++.|..
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~  190 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS  190 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            5789999999999999999999999999998853

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

Probab=80.12  E-value=58  Score=31.30  Aligned_cols=195  Identities=15%  Similarity=0.207  Sum_probs=108.4

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc--hhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHh
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNP--RENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL  110 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~--~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~  110 (420)
                      +.++.++-++...+.|+|.||+=   ++...+  .+.++.+.+.. +..+..-.|.         ..    +-++.+.+.
T Consensus        18 ~~~~k~~i~~~L~~~Gv~~iE~g---~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~---------~~----~~v~~a~~~   81 (259)
T cd07939          18 SREEKLAIARALDEAGVDEIEVG---IPAMGEEEREAIRAIVALGLPARLIVWCRA---------VK----EDIEAALRC   81 (259)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEe---cCCCCHHHHHHHHHHHhcCCCCEEEEeccC---------CH----HHHHHHHhC
Confidence            44555555555567899999994   222222  23455554322 2233333332         11    124567788


Q ss_pred             CCcEEEEEcccccch------------h----HHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Q 014691          111 GADYIDVELQVAREF------------N----DSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT  174 (420)
Q Consensus       111 ~~d~iDiEl~~~~~~------------~----~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~  174 (420)
                      |+++|-+-...++..            +    +.+...+..+..+.++.=+...+ +.+.+.+.++++.+.|+|.+-|+=
T Consensus        82 g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~i~l~D  160 (259)
T cd07939          82 GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRA-DPDFLIEFAEVAQEAGADRLRFAD  160 (259)
T ss_pred             CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCC-CHHHHHHHHHHHHHCCCCEEEeCC
Confidence            999988865443221            1    11122344566776666443333 468899999999999999988875


Q ss_pred             ec--CCHHHHHHHHHHhcc-CCCCEEEEecCCcc--hhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691          175 TA--LDITDVARVFQITVH-SQVPIIGLVMGERG--LISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (420)
Q Consensus       175 ~~--~s~~D~~~ll~~~~~-~~~p~I~~~MG~~G--~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~  246 (420)
                      +.  -+++++.+++..+.+ .+.|+-..+=-..|  ...=+..-.-|..+.=+++..- .-+.|.++.+++...++.
T Consensus       161 T~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~-G~~aGN~~tE~lv~~l~~  236 (259)
T cd07939         161 TVGILDPFTTYELIRRLRAATDLPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGL-GERAGNAALEEVVMALKH  236 (259)
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccc-cccccCcCHHHHHHHHHH
Confidence            44  468999888886553 24454433222222  2222222233433333343321 246888888887766653

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	420
2gpt_A	523	Crystal Structure Of Arabidopsis Dehydroquinate Deh		1e-165
2o7q_A	523	Crystal Structure Of The A. Thaliana Dhq-Dehydroshi		1e-164
3js3_A	258	Crystal Structure Of Type I 3-Dehydroquinate Dehydr		5e-22
1nvt_A	287	Crystal Structure Of Shikimate Dehydrogenase (Aroe		3e-19
3l2i_A	276	1.85 Angstrom Crystal Structure Of The 3-Dehydroqui		3e-19
3m7w_A	255	Crystal Structure Of Type I 3-Dehydroquinate Dehydr		4e-19
2egg_A	297	Crystal Structure Of Shikimate 5-Dehydrogenase (Aro		1e-18
4guf_A	276	1.5 Angstrom Crystal Structure Of The Salmonella En		2e-18
3nnt_A	276	Crystal Structure Of K170m Mutant Of Type I 3-Dehyd		2e-18
3o1n_A	276	1.03 Angstrom Crystal Structure Of Q236a Mutant Typ		2e-18
1qfe_A	252	The Structure Of Type I 3-Dehydroquinate Dehydratas		3e-18
3don_A	277	Crystal Structure Of Shikimate Dehydrogenase From S		4e-17
2hk7_A	269	Crystal Structure Of Shikimate Dehydrogenase From A		5e-16
2hk9_A	275	Crystal Structure Of Shikimate Dehydrogenase From A		5e-16
2ox1_A	196	Archaeal Dehydroquinase Length = 196		1e-14
2yr1_A	257	Crystal Structure Of 3-Dehydroquinate Dehydratase F		4e-14
1wxd_A	263	Crystal Structure Of Shikimate 5-dehydrogenase (aro		5e-13
1sfl_A	238	1.9a Crystal Structure Of Staphylococcus Aureus Typ		1e-12
1sfj_A	238	2.4a Crystal Structure Of Staphylococcus Aureus Typ		3e-12
3u62_A	253	Crystal Structure Of Shikimate Dehydrogenase From T		3e-12
2egz_A	219	Crystal Structure Of The 3-Dehydroquinate Dehydrata		1e-11
4fr5_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		2e-11
4fq8_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		2e-11
4fos_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		2e-11
4fpx_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		2e-11
4foo_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		2e-11
3phg_A	269	Crystal Structure Of The Shikimate 5-Dehydrogenase		2e-11
4fsh_A	271	Crystal Structure Of Shikimate Dehydrogenase (aroe)		3e-11
3toz_A	315	2.2 Angstrom Crystal Structure Of Shikimate 5-Dehyd		3e-11
1nyt_A	271	Shikimate Dehydrogenase Aroe Complexed With Nadp+ L		8e-11
3t4e_A	312	1.95 Angstrom Crystal Structure Of Shikimate 5-Dehy		1e-10
3l9c_A	259	The Crystal Structure Of Smu.777 From Streptococcus		2e-10
3fbt_A	282	Crystal Structure Of A Chorismate MutaseSHIKIMATE 5		1e-09
1npd_A	288	X-Ray Structure Of Shikimate Dehydrogenase Complexe		5e-09
1vi2_A	300	Crystal Structure Of Shikimate-5-Dehydrogenase With		6e-09
3tum_B	269	2.15 Angstrom Resolution Crystal Structure Of A Shi		5e-08
2ocz_A	231	The Structure Of A Putative 3-dehydroquinate Dehydr		8e-07
3o8q_A	281	1.45 Angstrom Resolution Crystal Structure Of Shiki		6e-06
1p74_A	272	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		6e-06
3pgj_A	302	2.49 Angstrom Resolution Crystal Structure Of Shiki		6e-06
3o8q_B	275	1.45 Angstrom Resolution Crystal Structure Of Shiki		8e-06
3jyo_A	283	Quinate Dehydrogenase From Corynebacterium Glutamic		2e-05
2nlo_A	302	Crystal Structure Of The Quinate Dehydrogenase From		2e-05
3pwz_A	272	Crystal Structure Of An Ael1 Enzyme From Pseudomona		8e-05
1npy_A	271	Structure Of Shikimate 5-Dehydrogenase-Like Protein		1e-04

>pdb|2GPT|A Chain A, Crystal Structure Of Arabidopsis Dehydroquinate Dehydratase- Shikimate Dehydrogenase In Complex With Tartrate And Shikimate Length = 523

Iteration: 1
 Score =  577 bits (1487), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 287/402 (71%), Positives = 329/402 (81%), Gaps = 2/402 (0%)
Query: 21  KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT 80
           KNP+LIC P+M +S+DKMV++  KA+  GADLVEIRLD LK+FNP E++KT+IK+SP+PT
Sbjct: 2   KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 81  LFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
           LFTYRP WEGGQY+GDENER DVLRLAMELGADYIDVELQVA EF  SI GKKP K KVI
Sbjct: 62  LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121
Query: 141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLV 200
           VSSHNYQ TPSVEDL  LVARIQ +GADIVK ATTA+DI DVAR+F IT  +QVP IGLV
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181
Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIG 260
           MGERGL+SRILC+KFGG+LTFGTL++  VSAPGQPTIKDLLDLYNFR++GPDTKV+GIIG
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241
Query: 261 KPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVK 320
           KPV HSKSPI++N+AFKSV FNGV+VHLLVD++  F Q YSS+DFAGFSCTIPHKEAA++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301
Query: 321 CCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR--GRLNVSGGVSSA 378
           CCDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+ISAIEDGLR  G  +     SS 
Sbjct: 302 CCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSP 361
Query: 379 LAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYENLQRL 420
           LA K  VVI                  +VVIANRTYE    L
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALEL 403

>pdb|2O7Q|A Chain A, Crystal Structure Of The A. Thaliana Dhq-Dehydroshikimate-Sdh- Shikimate-Nadp(H) Length = 523

Iteration: 1
 Score =  573 bits (1478), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 286/402 (71%), Positives = 328/402 (81%), Gaps = 2/402 (0%)
Query: 21  KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT 80
           KNP+LIC P+M +S+DKMV++  KA+  GADLVEIRLD LK+FNP E++KT+IK+SP+PT
Sbjct: 2   KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 81  LFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
           LFTYRP WEGGQY+GDENER DVLRLAMELGADYIDVELQVA EF  SI GKKP K KVI
Sbjct: 62  LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121
Query: 141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLV 200
           VSSHNYQ TPSVEDL  LVARIQ +GADIVK ATTA+DI DVAR+F IT  +QVP IGLV
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181
Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIG 260
           MGERGL+SRILC+KFGG+LTFGTL++  VSAPGQPTIKDLLDLYNFR++GPDTKV+GIIG
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241
Query: 261 KPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVK 320
           KPV HSKSPI++N+AFKSV FNGV+VHLLVD++  F Q YSS+DFAGFSCTIPHKEAA++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301
Query: 321 CCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR--GRLNVSGGVSSA 378
            CDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+ISAIEDGLR  G  +     SS 
Sbjct: 302 XCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDXIGSISAIEDGLRSSGDPSSVPSSSSP 361
Query: 379 LAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYENLQRL 420
           LA K  VVI                  +VVIANRTYE    L
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALEL 403

>pdb|3JS3|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase (Arod) From Clostridium Difficile With Covalent Reaction Intermediate Length = 258

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 122/233 (52%), Gaps = 14/233 (6%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPVPT 80
           ICVPI+G++   ++ +  +   +  D++E R+D  +N    + +K ++ E       +P 
Sbjct: 22  ICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPL 81
Query: 81  LFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRGKKPEK-CK 138
           LFT+R + EGG+     +    + +     G  D IDVEL +  E  D +     +K  K
Sbjct: 82  LFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVK 141
Query: 139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT-----VHSQ 193
           VI+S+H++  TP  E++ + + R+Q  GAD+ K A    +  DV  + + T     +++ 
Sbjct: 142 VIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIYAD 201
Query: 194 VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246
            PII + M   G+ISR+    FG  LTFG  ++  VSAPGQ + K+L  + N 
Sbjct: 202 RPIITMSMSGMGVISRLCGEIFGSALTFGAAKS--VSAPGQISFKELNSVLNL 252

>pdb|1NVT|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe Or Mj1084) In Complex With Nadp+ Length = 287

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFV--HLLVDDIAKFFQTYSSNDFAGFSC 310
           TKV G+IG PV HS SPI++N AFK  G N V+V   +L +++        +    GF+ 
Sbjct: 11  TKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNV 70
Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLN 370
           TIPHK   +K  DE+D  A+ IGAVN I  +  DGK  GYNTD +GA  A+E+ + GR+ 
Sbjct: 71  TIPHKIEIMKYLDEIDKDAQLIGAVNTI--KIEDGKAIGYNTDGIGARMALEEEI-GRVK 127
Query: 371 VSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYENLQRL 420
                         +VI                   ++IANRT E  + L
Sbjct: 128 DKN-----------IVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEAL 166

>pdb|3L2I|A Chain A, 1.85 Angstrom Crystal Structure Of The 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2. Length = 276

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 18/229 (7%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
           I V +MG+++  +  +      +  D++E R+D   N    E+       I+ +I + P+
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
             LFT+R   EGG+      + +D+ R A++ G  D ID+EL     E   ++       
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV-- 194
             VI+S+H++  TP+ E++   + ++Q  GADI K A       DV  +   TV  Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 195 ---PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
              PII + M + G+ISR+    FG   TFG ++    SAPGQ ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 266

>pdb|3M7W|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2 In Covalent Complex With Dehydroquinate Length = 255

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 18/229 (7%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
           I V +MG+++  +  +      +  D++E R+D   N    E+       I+ +I + P+
Sbjct: 21  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 80
Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
             LFT+R   EGG+      + +D+ R A++ G  D ID+EL     E   ++       
Sbjct: 81  --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 138
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV-- 194
             VI+S+H++  TP+ E++   + ++Q  GADI K A       DV  +   TV  Q   
Sbjct: 139 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 198
Query: 195 ---PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
              PII + M + G+ISR+    FG   TFG ++    SAPGQ ++ DL
Sbjct: 199 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 245

>pdb|2EGG|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From Geobacillus Kaustophilus Length = 297

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 90/179 (50%), Gaps = 15/179 (8%)
Query: 245 NFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSS 302
           N    G   KV+G+IG PV HS SP+++N+AF  +G    +    V+   +        +
Sbjct: 15  NLYFQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRA 74
Query: 303 NDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
              AG + TIPHK A +   DEVD  A+ IGAVN II   +DG+L GYNTD +G + A+E
Sbjct: 75  LGIAGVNVTIPHKLAVIPFLDEVDEHARRIGAVNTII--NNDGRLVGYNTDGLGYVQALE 132
Query: 363 DGLRGRLNVSGGVSSALAGK-LFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYENLQRL 420
           +     +N++      L GK + V+                   R+ +ANRT E  +RL
Sbjct: 133 E----EMNIT------LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERL 181

>pdb|4GUF|A Chain A, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica 3- Dehydroquinate Dehydratase (arod) E86a Mutant Length = 276

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 18/229 (7%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
           I V +MG+++  +  +      +  D++E R+D   N    E+       I+ +I + P+
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
             LFT+R    GG+      + +D+ R A++ G  D ID+EL     E   ++       
Sbjct: 102 --LFTFRSAKAGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV-- 194
             VI+S+H++  TP+ E++   + ++Q  GADI K A       DV  +   TV  Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 195 ---PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
              PII + M + G+ISR+    FG   TFG ++    SAPGQ ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 266

>pdb|3NNT|A Chain A, Crystal Structure Of K170m Mutant Of Type I 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2 In Non-Covalent Complex With Dehydroquinate. Length = 276

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 18/229 (7%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
           I V +MG+++  +  +      +  D++E R+D   N    E+       I+ +I + P+
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
             LFT+R   EGG+      + +D+ R A++ G  D ID+EL     E   ++       
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV-- 194
             VI+S+H++  TP+ E++   + ++Q  GADI   A       DV  +   TV  Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPMIAVMPQTKADVLTLLTATVEMQERY 219
Query: 195 ---PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
              PII + M + G+ISR+    FG   TFG ++    SAPGQ ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 266

>pdb|3O1N|A Chain A, 1.03 Angstrom Crystal Structure Of Q236a Mutant Type I Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Length = 276

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 18/229 (7%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
           I V +MG+++  +  +      +  D++E R+D   N    E+       I+ +I + P+
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
             LFT+R   EGG+      + +D+ R A++ G  D ID+EL     E   ++       
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV-- 194
             VI+S+H++  TP+ E++   + ++Q  GADI K A       DV  +   TV  Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 195 ---PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
              PII + M + G+ISR+    FG   TFG ++    SAPG  ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGAISVADL 266

>pdb|1QFE|A Chain A, The Structure Of Type I 3-Dehydroquinate Dehydratase From Salmonella Typhi Length = 252

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 118/239 (49%), Gaps = 18/239 (7%)
Query: 14  LVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKT-- 71
           ++  GM K    I V +MG  ++ +  +      +  D++E R+D   +    +++ T  
Sbjct: 10  IIGEGMPK----IIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAA 65
Query: 72  -LIKES--PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVA-REFN 126
            +I+++   +P LFT+R   EGG+        + + R A++ G  D ID+EL     +  
Sbjct: 66  RVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVK 125
Query: 127 DSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVF 186
            ++         V++S+H++  TPS E++ + + ++QA GADI K A       DV  + 
Sbjct: 126 ATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKHDVLTLL 185
Query: 187 QITVHSQV-----PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
             T+  Q      P+I + M + G+ISR+    FG   TFG ++    SAPGQ  + DL
Sbjct: 186 TATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQA--SAPGQIAVNDL 242

>pdb|3DON|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Staphylococcus Epidermidis Length = 277

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 78/140 (55%), Gaps = 10/140 (7%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVF--VHLLVDDIAKFFQTYSSNDFAGFSCTIP 313
           F +IG P+ HS SP++++  F+S+     +  +++ V+      +  S     GF+ TIP
Sbjct: 3   FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIP 62
Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTD---YVGAISAIEDGLRGRLN 370
           HKE  +   D+++  AKS+GAVN ++ +  DGK  GYNTD   YV  +  I +G+     
Sbjct: 63  HKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIYEGIEDAYI 120
Query: 371 V---SGGVSSALAGKLFVVI 387
           +   +GG S  +A +L+ ++
Sbjct: 121 LILGAGGASKGIANELYKIV 140

>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex Aeolicus In Complex With Mercury At 2.5 Angstrom Resolution Length = 269

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFS 309
            T+++G+IG PV HS SP+  N   +  G N V++   +  +++ K F+ + +    G +
Sbjct: 5   QTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVKGIN 64
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
            T+P KE  +   D V+  AK IGAVN +  +  +GK +GYNTD++G + +++
Sbjct: 65  VTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLK 115

>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex Aeolicus In Complex With Shikimate And Nadp+ At 2.2 Angstrom Resolution Length = 275

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFS 309
            T+++G+IG PV HS SP+  N   +  G N V++   +  +++ K F+ + +    G +
Sbjct: 11  QTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVKGIN 70
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
            T+P KE  +   D V+  AK IGAVN +  +  +GK +GYNTD++G + +++
Sbjct: 71  VTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLK 121

>pdb|2OX1|A Chain A, Archaeal Dehydroquinase Length = 196

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 29/197 (14%)
Query: 47  ASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRL 106
           A  AD+VE+R+D       R + + ++         T R + +GG+++GDE ER++ ++ 
Sbjct: 16  AEKADVVELRIDLFDFSGARVDKEKIL---------TCRRVSDGGKFEGDERERIEKMKR 66
Query: 107 AME-LGADYIDVELQV---AREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARI 162
           A + L  DY+D+E  +   A +FN          C++I S HN+  TP   D S L   +
Sbjct: 67  AFDSLNPDYVDLESDLPDSAFDFN----------CRIIESYHNFIRTP---DYSELKGIV 113
Query: 163 QASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFG 222
           +    D+VK AT      DV  + +I  +    ++  +MGER   +R+L A  G    + 
Sbjct: 114 EGRRGDLVKIATMGKSKRDVETIVRILTNYD-DVVAFLMGERFSFTRVLAAYLGSPFIYC 172
Query: 223 TLENGIVSAPGQPTIKD 239
            +  G   APGQ ++ D
Sbjct: 173 YV--GSPKAPGQISLDD 187

>pdb|2YR1|A Chain A, Crystal Structure Of 3-Dehydroquinate Dehydratase From Geobacillus Kaustophilus Hta426 Length = 257

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 104/236 (44%), Gaps = 17/236 (7%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK-----ESPVPT 80
           IC P++GE   K++ +  +      DL+E R D  +  + +E +             +P 
Sbjct: 22  ICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGEIPI 81
Query: 81  LFTYRPIWEGGQ-YDGDENERVDVLRLAMELGA-DYIDVELQVAREFNDSIRGKKPEKCK 138
           LFT R   EGGQ    +E E   ++      GA D +D EL       D  R    E+C 
Sbjct: 82  LFTIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGERIADVRR--MTEECS 139
Query: 139 V--IVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ--- 193
           V  +VS H +  TP  E L   + + +  GADI K A       DV  + Q T  ++   
Sbjct: 140 VWLVVSRHYFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEARREL 199
Query: 194 -VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQ 248
            +P+I + MG  G I+R+    FG  +TF        SAPGQ  I D+  + +  Q
Sbjct: 200 AIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQS--SAPGQIPIDDVRTVLSILQ 253

>pdb|1WXD|A Chain A, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From Thermus Thermophilus Hb8 Length = 263

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 13/115 (11%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVF------VHLLVDDIAKFFQTYSSNDFAGFS 309
           F ++G PV HS SP ++  A +S+G  G +      +  L   + +  +      F G +
Sbjct: 4   FAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRA-----FRGVN 58
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG 364
            T+P KEAA+   D V   A+ IGAVN ++  Q +G+LFG+NTD  G + A++ G
Sbjct: 59  LTLPLKEAALAHLDWVSPEAQRIGAVNTVL--QVEGRLFGFNTDAPGFLEALKAG 111

>pdb|1SFL|A Chain A, 1.9a Crystal Structure Of Staphylococcus Aureus Type I 3- Dehydroquinase, Apo Form Length = 238

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 16/220 (7%)
Query: 34  SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK----ESPVPTLFTYRPIWE 89
           S+++ ++          D++E+R+D  +N    +  + + K    +     L TYR   +
Sbjct: 15  SIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQ 74
Query: 90  GG--QYDGDENERVDVLRLAMELGADYIDVELQVAREFNDS---IRGKKPEKCKVIVSSH 144
           GG  Q+  D    + +  LA   G D ID+E Q   +       I   +    +VI+S H
Sbjct: 75  GGYGQFTNDSYLNL-ISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHH 133
Query: 145 NYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQ-ITVHSQV---PIIGLV 200
           N++ TP +++L  +  ++Q    + VK A    +  DV  + Q ++  S      ++G+ 
Sbjct: 134 NFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGIS 193
Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
           M + GLISR     FGG LT+G +  G   APGQ  + DL
Sbjct: 194 MSKLGLISRTAQGVFGGALTYGCI--GEPQAPGQIDVTDL 231

>pdb|1SFJ|A Chain A, 2.4a Crystal Structure Of Staphylococcus Aureus Type I 3- Dehydroquinase, With 3-Dehydroquinate Bound Length = 238

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 51  DLVEIRLDGLKNFNPRENIKTLIK----ESPVPTLFTYRPIWEGG--QYDGDENERVDVL 104
           D++E+R+D  +N    +  + + K    +     L TYR   +GG  Q+  D    + + 
Sbjct: 32  DVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNL-IS 90
Query: 105 RLAMELGADYIDVELQVAREFNDS---IRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVAR 161
            LA   G D ID+E Q   +       I   +    +VI+S HN++ TP +++L  +  +
Sbjct: 91  DLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFK 150
Query: 162 IQASGADIVKFATTALDITDVARVFQ-ITVHSQV---PIIGLVMGERGLISRILCAKFGG 217
           +Q    + VK A    +  DV  + Q ++  S      ++G+ M + GLISR     FGG
Sbjct: 151 MQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGG 210
Query: 218 FLTFGTLENGIVSAPGQPTIKDL 240
            LT+G +  G   APGQ  + DL
Sbjct: 211 ALTYGCI--GEPQAPGQIDVTDL 231

>pdb|3U62|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Thermotoga Maritima Length = 253

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 59/112 (52%), Gaps = 18/112 (16%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVF------VHLLVDDIAKFFQTYSSNDFAGFS 309
           F IIG PV HS SP LYNE FK  G N  +            +I +  + Y      GF+
Sbjct: 3   FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRILEEYD-----GFN 57
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAI 361
            TIPHKE  ++  +  +  A+ I AVNC+ R    GK  GYNTD+VG + ++
Sbjct: 58  ATIPHKERVMRYVEPSED-AQRIKAVNCVFR----GK--GYNTDWVGVVKSL 102

>pdb|2EGZ|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase From Aquifex Aeolicus Vf5 Length = 219

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 20/225 (8%)
Query: 25  LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN--FNPRENIKTLIKESPVPTLF 82
           LI VP+   +  +   ++ KA   GAD+VE+R+D   +   N  +     +    + T+ 
Sbjct: 2   LIAVPLDDTNFSE---NLKKAKEKGADIVELRVDQFSDTSLNYVKEKLEEVHSQGLKTIL 58
Query: 83  TYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQ----VAREFNDSIRGKKPEKCK 138
           T R   EGG+   +  E  + L       +DY D+EL     + + +N +    K    K
Sbjct: 59  TIRSPEEGGREVKNREELFEELSPL----SDYTDIELSSRGLLVKLYNITKEAGK----K 110
Query: 139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIG 198
           +I+S HN++ TP    +  ++      G  I K A  A    DVAR+  I+   +   I 
Sbjct: 111 LIISYHNFELTPPNWIIREVLREGYRYGG-IPKIAVKANSYEDVARLLCISRQVEGEKIL 169
Query: 199 LVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDL 243
           + MG+ G ISR+    FG  +T+ +LE     APGQ  ++++++L
Sbjct: 170 ISMGDYGKISRLAGYVFGSVITYCSLEKAF--APGQIPLEEMVEL 212

>pdb|4FR5|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210s Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
           K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
            T+P KE A + CD++  +A   GAVN ++    +  L GYNTD +G  +S  +   +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKL 383
           L + +GG + ALA +L
Sbjct: 122 LILGAGGSAKALACEL 137

>pdb|4FQ8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210a Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
           K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
            T+P KE A + CD++  +A   GAVN ++    +  L GYNTD +G  +S  +   +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKL 383
           L + +GG + ALA +L
Sbjct: 122 LILGAGGSAKALACEL 137

>pdb|4FOS|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237a Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
           K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
            T+P KE A + CD++  +A   GAVN ++    +  L GYNTD +G  +S  +   +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKL 383
           L + +GG + ALA +L
Sbjct: 122 LILGAGGSAKALACEL 137

>pdb|4FPX|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237n Mutant From Helicobacter Pylori Length = 271

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
           K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
            T+P KE A + CD++  +A   GAVN ++    +  L GYNTD +G  +S  +   +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKL 383
           L + +GG + ALA +L
Sbjct: 122 LILGAGGSAKALACEL 137

>pdb|4FOO|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237k Mutant From Helicobacter Pylori Length = 271

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
           K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
            T+P KE A + CD++  +A   GAVN ++    +  L GYNTD +G  +S  +   +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKL 383
           L + +GG + ALA +L
Sbjct: 122 LILGAGGSAKALACEL 137

>pdb|3PHG|A Chain A, Crystal Structure Of The Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori Length = 269

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
           K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
            T+P KE A + CD++  +A   GAVN ++    +  L GYNTD +G  +S  +   +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKL 383
           L + +GG + ALA +L
Sbjct: 122 LILGAGGSAKALACEL 137

>pdb|4FSH|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe) Clinical Variant V2356 From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 18/138 (13%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDF---- 305
           K FG+ G P+ HSKSP+++N  F    K +GF G +  +L+       +++  N+F    
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKKLGFLGHYRPILLP-----LESHIKNEFLHLG 58
Query: 306 -AGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIED 363
            +G + T+P KE A + CD++  +A    ++N ++    +  L GYNTD +G  +S    
Sbjct: 59  LSGANVTLPFKERAFQVCDKIKGIALECASINTLVLENDE--LVGYNTDALGFYLSLKHQ 116
Query: 364 GLRGRLNV-SGGVSSALA 380
             +  L + SGG + ALA
Sbjct: 117 NYQNALILGSGGSAKALA 134

>pdb|3TOZ|A Chain A, 2.2 Angstrom Crystal Structure Of Shikimate 5-Dehydrogenase From Listeria Monocytogenes In Complex With Nad. Length = 315

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 75/135 (55%), Gaps = 10/135 (7%)
Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSC 310
           T++ G+I  P+ HS SP ++NEAF  +G + V++   V D  +    Q + + +  G++ 
Sbjct: 37  TELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNV 96
Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED------G 364
           ++P+K    K  D++   A+ +GAVN ++    DG L G+ TD  G + A+++      G
Sbjct: 97  SMPNKTNIHKYLDKLSPAAELVGAVNTVV--NDDGVLTGHITDGTGYMRALKEAGHDIIG 154
Query: 365 LRGRLNVSGGVSSAL 379
            +  +  +GG ++A+
Sbjct: 155 KKMTICGAGGAATAI 169

>pdb|1NYT|A Chain A, Shikimate Dehydrogenase Aroe Complexed With Nadp+ Length = 271

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 9/131 (6%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLL--VDDIAKFFQTYSSNDFAGFSCT 311
           + + + G P+ HSKSP ++ +  + +     +  +L  ++D       + S    G + T
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE------DGL 365
           +P KE A    DE+   A   GAVN ++R + DG+L G NTD VG +S +E       GL
Sbjct: 62  VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNTDGVGLLSDLERLSFIRPGL 120
Query: 366 RGRLNVSGGVS 376
           R  L  +GG S
Sbjct: 121 RILLIGAGGAS 131

>pdb|3T4E|A Chain A, 1.95 Angstrom Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp. Enterica Serovar Typhimurium In Complex With Nad Length = 312

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 311
           ++ G++  P+ HS SP + N+A +  G    ++   VD+   A   +   +    G   +
Sbjct: 32  ELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTTFASAIEGLKALKMRGTGVS 91
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGR 368
           +P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    +RG+
Sbjct: 92  MPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDMRGK 149
Query: 369 LNV 371
             V
Sbjct: 150 TMV 152

>pdb|3L9C|A Chain A, The Crystal Structure Of Smu.777 From Streptococcus Mutans Ua159 Length = 259

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 121/251 (48%), Gaps = 32/251 (12%)
Query: 7   LVASGSKLVS--GG--MRKNPTLICVPIMGESVDKM-VVDMGKANASGADLVEIRLDGLK 61
           LV  GS + S  GG  M +    I VP+M +++++   +D+ + +++  D++E R D L 
Sbjct: 14  LVPRGSHMASMTGGQQMGRGSMKIVVPVMPQNIEEANQLDLTRIDST--DIIEWRADYLV 71
Query: 62  NFNPRENIKTLI-----KESPVPTLFTYRPIWEGGQYDGDENERVDVLR-LAMELGADYI 115
               +++I T+      K S    +FT R   EGG       + + ++R +A     DYI
Sbjct: 72  ----KDDILTVAPAIFEKFSGHEVIFTLRTEKEGGNISLSNEDYLAIIRDIAALYQPDYI 127
Query: 116 DVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT 175
           D E    R+  + +     +   +I+S HN++ TP  E+L  + + + A    +VK A  
Sbjct: 128 DFEYFSYRDVLEEMY----DFSNLILSYHNFEETP--ENLMEVFSELTALAPRVVKIAVM 181
Query: 176 ------ALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIV 229
                  LD+ +  R F+ T++     + + M + G ISR+     G   TF +LE    
Sbjct: 182 PKNEQDVLDLMNYTRGFK-TLNPNQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQE-- 238
Query: 230 SAPGQPTIKDL 240
           SAPGQ ++ D+
Sbjct: 239 SAPGQISLADM 249

>pdb|3FBT|A Chain A, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5- Dehydrogenase Fusion Protein From Clostridium Acetobutylicum Length = 282

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
           M  +T ++G+IG+ +GHS S  ++   F+ VG  G++    V  + + +   T+      
Sbjct: 1   MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCG 60
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG 356
           G + TIP+K   +K   E+   A+ IGAVN +  + S   + G+NTDY+G
Sbjct: 61  GLNVTIPYKVEVMKELYEISEKARKIGAVNTL--KFSREGISGFNTDYIG 108

>pdb|1NPD|A Chain A, X-Ray Structure Of Shikimate Dehydrogenase Complexed With Nad+ From E.Coli (Ydib) Northeast Structural Genomics Research Consortium (Nesg) Target Er24 Length = 288

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 311
           ++ G+   P+ HS SP   N+A +  G    +    VD+       +   +    G   +
Sbjct: 8   ELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXRGTGVS 67
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGR 368
            P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    ++G+
Sbjct: 68  XPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGK 125
Query: 369 LNV---SGGVSSALAGK 382
             V   +GG S+A+  +
Sbjct: 126 TXVLLGAGGASTAIGAQ 142

>pdb|1VI2|A Chain A, Crystal Structure Of Shikimate-5-Dehydrogenase With Nad Length = 300

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 311
           ++ G+   P+ HS SP   N+A +  G    +    VD+       +   +    G   +
Sbjct: 10  ELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXRGTGVS 69
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGR 368
            P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    ++G+
Sbjct: 70  XPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGK 127
Query: 369 LNV---SGGVSSALAGK 382
             V   +GG S+A+  +
Sbjct: 128 TXVLLGAGGASTAIGAQ 144

>pdb|2OCZ|A Chain A, The Structure Of A Putative 3-dehydroquinate Dehydratase From Streptococcus Pyogenes Length = 231

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 100/231 (43%), Gaps = 28/231 (12%)
Query: 22  NPTLICVPIMGESVDK-MVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLI-----KE 75
           N   I  P+     D+   +D+ K      +L+E R D    F P++ I  +      K 
Sbjct: 2   NAXRIVAPVXPRHFDEAQAIDISKY--EDVNLIEWRAD----FLPKDEIVAVAPAIFEKF 55
Query: 76  SPVPTLFTYRPIWEGGQYDGDENERVDVLR-LAMELGADYIDVELQVAREFNDSIRGKKP 134
           +    +FT R + EGG       E VD+++ +      DYID E    +    S+  +  
Sbjct: 56  AGKEIIFTLRTVQEGGNITLSSQEYVDIIKEINAIYNPDYIDFEYFTHK----SVFQEXL 111
Query: 135 EKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT------ALDITDVARVFQI 188
           +   +I+S HN++ TP  E+L    +        +VK A         LD+ +  R F+ 
Sbjct: 112 DFPNLILSYHNFEETP--ENLXEAFSEXTKLAPRVVKIAVXPQSEQDVLDLXNYTRGFK- 168
Query: 189 TVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKD 239
           T++ +     +  G+ G +SR      G   T+ +L++  VS PGQ T+ D
Sbjct: 169 TLNPEQEFATISXGKLGRLSRFAGDVIGSSWTYVSLDH--VSGPGQVTLND 217

>pdb|3O8Q|A Chain A, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae Length = 281

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVH--LLVDDIAKFFQTYSSNDFA 306
           M      + + G P+ HSKSP ++    +    + ++    + VD   +  + + +    
Sbjct: 4   MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR 63
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAIS 359
           G + T+P KE A +  D +   A+  GAVN  +++  DG++ G NTD  G + 
Sbjct: 64  GCNVTVPFKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGEGLVQ 115

>pdb|1P74|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) From Haemophilus Influenzae Length = 272

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 20/171 (11%)
Query: 255 VFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLL--VDDIAKFFQTYSSNDFAGFSCTI 312
           ++ + G P+  SKSP++ N+          ++  L  +D   +    +      G + T 
Sbjct: 3   LYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITS 62
Query: 313 PHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE--DGLRGRLN 370
           P KE A +  DE    AK   A N + ++  DGKL+  NTD +G ++ ++  + LR   +
Sbjct: 63  PFKERAYQLADEYSQRAKLAEACNTL-KKLDDGKLYADNTDGIGLVTDLQRLNWLRPNQH 121
Query: 371 VS-GGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYENLQRL 420
           V   G   A  G L  ++                   +V+ANRT+   + L
Sbjct: 122 VLILGAGGATKGVLLPLL--------------QAQQNIVLANRTFSKTKEL 158

>pdb|3PGJ|A Chain A, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar Eltor Str. N16961 In Complex With Shikimate Length = 302

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVH--LLVDDIAKFFQTYSSNDFA 306
           M      + + G P+ HSKSP ++    +    + ++    + VD   +  + + +    
Sbjct: 25  MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR 84
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAIS 359
           G + T+P KE A +  D +   A+  GAVN  +++  DG++ G NTD  G + 
Sbjct: 85  GCNVTVPFKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGEGLVQ 136

>pdb|3O8Q|B Chain B, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae Length = 275

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVH--LLVDDIAKFFQTYSSNDFAGFSCTIP 313
           + + G P+ HSKSP ++    +    + ++    + VD   +  + + +    G + T+P
Sbjct: 5   YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVP 64
Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAIS 359
            KE A +  D +   A+  GAVN  +++  DG++ G NTD  G + 
Sbjct: 65  FKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGEGLVQ 109

>pdb|3JYO|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In Complex With Nad Length = 283

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSND 304
           D+ + G+IG+ +  S++P ++     + G   V+  +          D+           
Sbjct: 3   DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62
Query: 305 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG 364
           F G + T P+K+A +   DEV   A  +GAVN ++   + G   G+NTD  G    +E+G
Sbjct: 63  FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVV-IDATGHTTGHNTDVSGFGRGMEEG 121
Query: 365 L 365
           L
Sbjct: 122 L 122

>pdb|2NLO|A Chain A, Crystal Structure Of The Quinate Dehydrogenase From Corynebacterium Glutamicum Length = 302

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSND 304
           D+ + G+IG+ +  S++P ++     + G   V+  +          D+           
Sbjct: 22  DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 81
Query: 305 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG 364
           F G + T P+K+A +   DEV   A  +GAVN ++   + G   G+NTD  G    +E+G
Sbjct: 82  FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVV-IDATGHTTGHNTDVSGFGRGMEEG 140
Query: 365 L 365
           L
Sbjct: 141 L 141

>pdb|3PWZ|A Chain A, Crystal Structure Of An Ael1 Enzyme From Pseudomonas Putida Length = 272

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 256 FGIIGKPVGHSKSPILY-------NEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGF 308
           + +IG+P+ H+KSP+++       N+  +     G      +DD       + S    G 
Sbjct: 5   YAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGS-----LDDFEAQVLQFRSEGGKGM 59
Query: 309 SCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---- 364
           + T P K  A +  D     A+   A N +  +  DG++   N D +G +  IE+     
Sbjct: 60  NITAPFKLRAFELADRRSERAQLARAANAL--KFEDGRIVAENFDGIGLLRDIEENLGEP 117
Query: 365 LRGRLNVSGGVSSALAGKLF 384
           LR R  +  G   A+ G L 
Sbjct: 118 LRNRRVLLLGAGGAVRGALL 137

>pdb|1NPY|A Chain A, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607 Length = 271

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 271 LYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAK 330
            +N  +  +G N ++      DI    +   +    G + ++P KE  +   DE+   A+
Sbjct: 23  FHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIHPSAQ 82
Query: 331 SIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
           +I +VN I+    +G L  YNTDY+  +  IE
Sbjct: 83  AIESVNTIV--NDNGFLRAYNTDYIAIVKLIE 112

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	420
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	0.0
2egz_A	219	3-dehydroquinate dehydratase; aquifex aeolicus VF5	3e-72
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	1e-71
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	2e-71
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	4e-70
3js3_A	258	3-dehydroquinate dehydratase; AROD, covalent react	7e-68
2ocz_A	231	3-dehydroquinate dehydratase; structural genomics,	7e-68
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	2e-67
3l9c_A	259	3-dehydroquinate dehydratase; AROD, amino-acid bio	1e-66
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	4e-63
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	1e-62
2ox1_A	196	3-dehydroquinate dehydratase; (beta-alpha)8 barrel	7e-62
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	9e-62
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	3e-60
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	9e-58
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	1e-57
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	1e-56
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	1e-56
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	1e-54
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	2e-52
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	9e-48
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	1e-46
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	4e-46
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	6e-46
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	7e-45
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	6e-05
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	1e-04
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	4e-04

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* Length = 523

 Score =  545 bits (1406), Expect = 0.0
 Identities = 304/402 (75%), Positives = 346/402 (86%), Gaps = 2/402 (0%)

Query: 21  KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT 80
           KNP+LIC P+M +S+DKMV++  KA+  GADLVEIRLD LK+FNP E++KT+IK+SP+PT
Sbjct: 2   KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61

Query: 81  LFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
           LFTYRP WEGGQY+GDENER DVLRLAMELGADYIDVELQVA EF  SI GKKP K KVI
Sbjct: 62  LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121

Query: 141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLV 200
           VSSHNYQ TPSVEDL  LVARIQ +GADIVK ATTA+DI DVAR+F IT  +QVP IGLV
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181

Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIG 260
           MGERGL+SRILC+KFGG+LTFGTL++  VSAPGQPTIKDLLDLYNFR++GPDTKV+GIIG
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241

Query: 261 KPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVK 320
           KPV HSKSPI++N+AFKSV FNGV+VHLLVD++  F Q YSS+DFAGFSCTIPHKEAA++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301

Query: 321 CCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR--GRLNVSGGVSSA 378
           CCDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+ISAIEDGLR  G  +     SS 
Sbjct: 302 CCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSP 361

Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420
           LA K  VVIGAGGAGKALAYGAK KGA+VVIANRTYE    L
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALEL 403

>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A Length = 219

 Score =  225 bits (574), Expect = 3e-72
 Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 12/223 (5%)

Query: 25  LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTL--IKESPVPTLF 82
           LI VP+   +  + +    KA   GAD+VE+R+D   + +     + L  +    + T+ 
Sbjct: 2   LIAVPLDDTNFSENLK---KAKEKGADIVELRVDQFSDTSLNYVKEKLEEVHSQGLKTIL 58

Query: 83  TYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVS 142
           T R   EGG+   +  E  +     +   +DY D+EL             K    K+I+S
Sbjct: 59  TIRSPEEGGREVKNREELFE----ELSPLSDYTDIELSSRGLLVKLYNITKEAGKKLIIS 114

Query: 143 SHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMG 202
            HN++ TP    +  ++      G  I K A  A    DVAR+  I+   +   I + MG
Sbjct: 115 YHNFELTPPNWIIREVLREGYRYG-GIPKIAVKANSYEDVARLLCISRQVEGEKILISMG 173

Query: 203 ERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
           + G ISR+    FG  +T+ +LE     APGQ  ++++++L  
Sbjct: 174 DYGKISRLAGYVFGSVITYCSLEKA--FAPGQIPLEEMVELRK 214

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* Length = 238

 Score =  224 bits (572), Expect = 1e-71
 Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 17/240 (7%)

Query: 19  MRKNPTLICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK--- 74
           M      +   I  + S+++ ++          D++E+R+D  +N    +  + + K   
Sbjct: 1   MTH--VEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKV 58

Query: 75  -ESPVPTLFTYRPIWEGGQYDGDENERVDVL-RLAMELGADYIDVELQVAREFNDS---I 129
            +     L TYR   +GG      +  ++++  LA   G D ID+E Q   +       I
Sbjct: 59  MQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRII 118

Query: 130 RGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT 189
              +    +VI+S HN++ TP +++L  +  ++Q    + VK A    +  DV  + Q  
Sbjct: 119 THLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAM 178

Query: 190 V----HSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
                     ++G+ M + GLISR     FGG LT+G +      APGQ  + DL     
Sbjct: 179 STFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGE--PQAPGQIDVTDLKAQVT 236

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  224 bits (572), Expect = 2e-71
 Identities = 67/239 (28%), Positives = 102/239 (42%), Gaps = 13/239 (5%)

Query: 24  TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPV 78
             IC P++GE   K++ +  +      DL+E R D  +  + +E +             +
Sbjct: 20  PCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGEI 79

Query: 79  PTLFTYRPIWEGGQY-DGDENERVDVLRLAMELGA-DYIDVELQVAREFNDSIRGKKPEK 136
           P LFT R   EGGQ    +E E   ++      GA D +D EL       D  R  +   
Sbjct: 80  PILFTIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGERIADVRRMTEECS 139

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ--- 193
             ++VS H +  TP  E L   + + +  GADI K A       DV  + Q T  ++   
Sbjct: 140 VWLVVSRHYFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEARREL 199

Query: 194 -VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGP 251
            +P+I + MG  G I+R+    FG  +TF        SAPGQ  I D+  + +  Q   
Sbjct: 200 AIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQ--SSAPGQIPIDDVRTVLSILQTYS 256

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* Length = 312

 Score =  222 bits (569), Expect = 4e-70
 Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 16/194 (8%)

Query: 230 SAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLL 289
           S+      ++L    N   +    ++ G++  P+ HS SP + N+A +  G    ++   
Sbjct: 8   SSGVDLGTENLYFQSNAMDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFE 67

Query: 290 V--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKL 347
           V     A   +   +    G   ++P+K+ A +  DE+   AK +GA+N I+    DG L
Sbjct: 68  VDNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYL 125

Query: 348 FGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-R 406
            GYNTD  G I AI++               + GK  V++GAGGA  A+   A  +G   
Sbjct: 126 RGYNTDGTGHIRAIKESGFD-----------MRGKTMVLLGAGGAATAIGAQAAIEGIKE 174

Query: 407 VVIANRTYENLQRL 420
           + + NR  +  ++ 
Sbjct: 175 IKLFNRKDDFFEKA 188

>3js3_A 3-dehydroquinate dehydratase; AROD, covalent reaction intermediate, amino-acid biosynthesis, aromatic amino acid biosynthesis, lyase; HET: DHS; 2.20A {Clostridium difficile} Length = 258

 Score =  215 bits (548), Expect = 7e-68
 Identities = 71/235 (30%), Positives = 122/235 (51%), Gaps = 14/235 (5%)

Query: 24  TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPV 78
             ICVPI+G++   ++ +  +   +  D++E R+D  +N    + +K ++ E       +
Sbjct: 20  PKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDI 79

Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRGK-KPEK 136
           P LFT+R + EGG+     +    + +     G  D IDVEL +  E  D +      ++
Sbjct: 80  PLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKE 139

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT-----VH 191
            KVI+S+H++  TP  E++ + + R+Q  GAD+ K A    +  DV  + + T     ++
Sbjct: 140 VKVIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIY 199

Query: 192 SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246
           +  PII + M   G+ISR+    FG  LTFG  ++  VSAPGQ + K+L  + N 
Sbjct: 200 ADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKS--VSAPGQISFKELNSVLNL 252

>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1} Length = 231

 Score =  214 bits (546), Expect = 7e-68
 Identities = 54/237 (22%), Positives = 95/237 (40%), Gaps = 16/237 (6%)

Query: 22  NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SPVPT 80
           N   I  P+M    D+    +  +     +L+E R D L           + ++ +    
Sbjct: 2   NAMRIVAPVMPRHFDEAQ-AIDISKYEDVNLIEWRADFLPKDEIVAVAPAIFEKFAGKEI 60

Query: 81  LFTYRPIWEGGQYDGDENERVDVL-RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKV 139
           +FT R + EGG       E VD++  +      DYID E    +     +     +   +
Sbjct: 61  IFTLRTVQEGGNITLSSQEYVDIIKEINAIYNPDYIDFEYFTHKSVFQEML----DFPNL 116

Query: 140 IVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT-----VHSQV 194
           I+S HN++ TP  E+L    + +      +VK A       DV  +   T     ++ + 
Sbjct: 117 ILSYHNFEETP--ENLMEAFSEMTKLAPRVVKIAVMPQSEQDVLDLMNYTRGFKTLNPEQ 174

Query: 195 PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGP 251
               + MG+ G +SR      G   T+ +L++  VS PGQ T+ D+  +    +M  
Sbjct: 175 EFATISMGKLGRLSRFAGDVIGSSWTYVSLDH--VSGPGQVTLNDMKRIIEVLEMDI 229

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 3nnt_A* 3oex_A 3m7w_A 1gqn_A 1l9w_A* 1qfe_A* Length = 276

 Score =  214 bits (546), Expect = 2e-67
 Identities = 64/237 (27%), Positives = 111/237 (46%), Gaps = 14/237 (5%)

Query: 21  KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE----- 75
           +    I V +MG+++  +  +      +  D++E R+D   N    E++           
Sbjct: 37  EGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREII 96

Query: 76  SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDS-IRGKK 133
           +  P LFT+R   EGG+      + +D+ R A++ G  D ID+EL    +   + +    
Sbjct: 97  TDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAH 156

Query: 134 PEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITV--- 190
                VI+S+H++  TP+ E++   + ++Q  GADI K A       DV  +   TV   
Sbjct: 157 QHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQ 216

Query: 191 --HSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
             ++  PII + M + G+ISR+    FG   TFG ++    SAPG  ++ DL  +  
Sbjct: 217 ERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGAISVADLRTVLT 271

>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis, aromatic amino acid biosynthe schiff base, lyase; 1.60A {Streptococcus mutans} Length = 259

 Score =  211 bits (539), Expect = 1e-66
 Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 16/234 (6%)

Query: 19  MRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SP 77
           M +    I VP+M +++++    +        D++E R D L   +       + ++ S 
Sbjct: 30  MGRGSMKIVVPVMPQNIEEAN-QLDLTRIDSTDIIEWRADYLVKDDILTVAPAIFEKFSG 88

Query: 78  VPTLFTYRPIWEGGQYDGDENERVDVLR-LAMELGADYIDVELQVAREFNDSIRGKKPEK 136
              +FT R   EGG       + + ++R +A     DYID E    R+  + +     + 
Sbjct: 89  HEVIFTLRTEKEGGNISLSNEDYLAIIRDIAALYQPDYIDFEYFSYRDVLEEMY----DF 144

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT-----VH 191
             +I+S HN++ TP  E+L  + + + A    +VK A    +  DV  +   T     ++
Sbjct: 145 SNLILSYHNFEETP--ENLMEVFSELTALAPRVVKIAVMPKNEQDVLDLMNYTRGFKTLN 202

Query: 192 SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
                + + M + G ISR+     G   TF +LE    SAPGQ ++ D+  +  
Sbjct: 203 PNQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQE--SAPGQISLADMRKIKE 254

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* Length = 315

 Score =  204 bits (522), Expect = 4e-63
 Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 17/198 (8%)

Query: 227 GIVSAPGQPTIKDLLDLYNFRQM-GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVF 285
           G+         +         +     T++ G+I  P+ HS SP ++NEAF  +G + V+
Sbjct: 10  GVDLGTENLYFQSNAMTNKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVY 69

Query: 286 VHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQS 343
           +   V   ++    Q + + +  G++ ++P+K    K  D++   A+ +GAVN ++    
Sbjct: 70  LAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVND-- 127

Query: 344 DGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAK 403
           DG L G+ TD  G + A+++               + GK   + GAGGA  A+   A   
Sbjct: 128 DGVLTGHITDGTGYMRALKEAGHD-----------IIGKKMTICGAGGAATAICIQAALD 176

Query: 404 GA-RVVIANRTYENLQRL 420
           G   + I NR  +     
Sbjct: 177 GVKEISIFNRKDDFYANA 194

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A Length = 275

 Score =  201 bits (515), Expect = 1e-62
 Identities = 55/180 (30%), Positives = 96/180 (53%), Gaps = 15/180 (8%)

Query: 243 LYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTY 300
            ++   +   T+++G+IG PV HS SP+  N   +  G N V++   +  +++ K F+ +
Sbjct: 2   HHHHHMINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGF 61

Query: 301 SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISA 360
            +    G + T+P KE  +   D V+  AK IGAVN +     +GK +GYNTD++G + +
Sbjct: 62  KALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFE--NGKAYGYNTDWIGFLKS 119

Query: 361 IEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420
           ++  +             +  K  +V+GAGGA +A+ Y    +GA+V + NRT E   +L
Sbjct: 120 LKSLIPE-----------VKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKL 168

>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A {Archaeoglobus fulgidus} Length = 196

 Score =  197 bits (503), Expect = 7e-62
 Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 31/221 (14%)

Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYR 85
           +   +      ++        A  AD+VE+R+D       R +            + T R
Sbjct: 3   LVATLSSPEELEL--------AEKADVVELRIDLFDFSGARVDK---------EKILTCR 45

Query: 86  PIWEGGQYDGDENERVDVLRLAME-LGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSH 144
            + +GG+++GDE ER++ ++ A + L  DY+D+E  +     D         C++I S H
Sbjct: 46  RVSDGGKFEGDERERIEKMKRAFDSLNPDYVDLESDLPDSAFDF-------NCRIIESYH 98

Query: 145 NYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGER 204
           N+  TP   +L      ++    D+VK AT      DV  + +I  +    ++  +MGER
Sbjct: 99  NFIRTPDYSEL---KGIVEGRRGDLVKIATMGKSKRDVETIVRILTNYD-DVVAFLMGER 154

Query: 205 GLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
              +R+L A  G    +  + +    APGQ ++ D  ++ +
Sbjct: 155 FSFTRVLAAYLGSPFIYCYVGS--PKAPGQISLDDAREIIS 193

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 Length = 287

 Score =  200 bits (511), Expect = 9e-62
 Identities = 70/174 (40%), Positives = 95/174 (54%), Gaps = 16/174 (9%)

Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
           +   TKV G+IG PV HS SPI++N AFK  G N V+V   V  +++        +    
Sbjct: 7   INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66

Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 366
           GF+ TIPHK   +K  DE+D  A+ IGAVN I     DGK  GYNTD +GA  A+E+ + 
Sbjct: 67  GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIE--DGKAIGYNTDGIGARMALEEEI- 123

Query: 367 GRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420
                       +  K  V+ GAGGA +A+A+   AK   ++IANRT E  + L
Sbjct: 124 ----------GRVKDKNIVIYGAGGAARAVAFEL-AKDNNIIIANRTVEKAEAL 166

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} Length = 297

 Score =  197 bits (502), Expect = 3e-60
 Identities = 67/179 (37%), Positives = 94/179 (52%), Gaps = 15/179 (8%)

Query: 245 NFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSS 302
           N    G   KV+G+IG PV HS SP+++N+AF  +G    +    V    +        +
Sbjct: 15  NLYFQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRA 74

Query: 303 NDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
              AG + TIPHK A +   DEVD  A+ IGAVN II    DG+L GYNTD +G + A+E
Sbjct: 75  LGIAGVNVTIPHKLAVIPFLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYVQALE 132

Query: 363 DGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQRL 420
           + +             L GK  +VIGAGG  + + +   +  A R+ +ANRT E  +RL
Sbjct: 133 EEMNI----------TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERL 181

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* Length = 269

 Score =  189 bits (482), Expect = 9e-58
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 21/172 (12%)

Query: 253 TKVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGF 308
            K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G 
Sbjct: 3   LKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGA 62

Query: 309 SCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGR 368
           + T+P KE A + CD++  +A   GAVN ++    + +L GYNTD +G   +++      
Sbjct: 63  NVTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQ----- 115

Query: 369 LNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420
                        +  +++GAGG+ KALA   K +G +V + NR+   L   
Sbjct: 116 ----------KNYQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFF 157

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 Length = 271

 Score =  189 bits (482), Expect = 1e-57
 Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 18/174 (10%)

Query: 249 MGPDTKV-FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAG 307
           +  DT++   + G+P   +     +N  +  +G N ++      DI    +   +    G
Sbjct: 2   INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59

Query: 308 FSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRG 367
            + ++P KE  +   DE+   A++I +VN I+    +G L  YNTDY+  +  IE     
Sbjct: 60  CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKYHLN 117

Query: 368 RLNVSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYENLQRL 420
           +                +V G+GG  KA+      +   ++ I  R  +  Q L
Sbjct: 118 K------------NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYL 159

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A Length = 283

 Score =  187 bits (477), Expect = 1e-56
 Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 20/177 (11%)

Query: 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSND 304
           D+ + G+IG+ +  S++P ++     + G   V+  +          D+           
Sbjct: 3   DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62

Query: 305 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG 364
           F G + T P+K+A +   DEV   A  +GAVN ++     G   G+NTD  G    +E+G
Sbjct: 63  FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEG 121

Query: 365 LRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQRL 420
           L                   V +GAGG G A+AY     G  ++ +A+      Q L
Sbjct: 122 LPN-----------AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL 167

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} Length = 282

 Score =  186 bits (476), Expect = 1e-56
 Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 16/175 (9%)

Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
           M  +T ++G+IG+ +GHS S  ++   F+ VG  G++    V  + + +   T+      
Sbjct: 1   MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCG 60

Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 366
           G + TIP+K   +K   E+   A+ IGAVN +        + G+NTDY+G    +     
Sbjct: 61  GLNVTIPYKVEVMKELYEISEKARKIGAVNTLKFS--REGISGFNTDYIGFGKMLSK--- 115

Query: 367 GRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYENLQRL 420
               V       +   + VV+G+GGA +A+    K   A+ + +  R  E    +
Sbjct: 116 --FRVE------IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEI 162

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* Length = 263

 Score =  181 bits (461), Expect = 1e-54
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 17/169 (10%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCT 311
             F ++G PV HS SP ++  A +S+G  G +       + +    +      F G + T
Sbjct: 2   LRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRA-FRGVNLT 60

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
           +P KEAA+   D V   A+ IGAVN +++   +G+LFG+NTD  G + A++ G       
Sbjct: 61  LPLKEAALAHLDWVSPEAQRIGAVNTVLQV--EGRLFGFNTDAPGFLEALKAGG------ 112

Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420
                  L G   +V+GAGGAG+A+A+  +  G  V + NRT +    L
Sbjct: 113 -----IPLKGPA-LVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALAL 155

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* Length = 277

 Score =  175 bits (447), Expect = 2e-52
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)

Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIP 313
           F +IG P+ HS SP++++  F+S+     +  + V  +      +  S     GF+ TIP
Sbjct: 3   FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIP 62

Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSG 373
           HKE  +   D+++  AKS+GAVN ++ +  DGK  GYNTD +G ++ ++    G      
Sbjct: 63  HKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIYEG------ 114

Query: 374 GVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYENLQRL 420
                +     +++GAGGA K +A    K     + +ANRT       
Sbjct: 115 -----IEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNW 157

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} Length = 253

 Score =  163 bits (414), Expect = 9e-48
 Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 25/168 (14%)

Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIP 313
           F IIG PV HS SP LYNE FK  G N  +    +  +      +     ++ GF+ TIP
Sbjct: 3   FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRI-LEEYDGFNATIP 61

Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSG 373
           HKE  ++  +  +  A+ I AVNC+ R +      GYNTD+VG + ++E           
Sbjct: 62  HKERVMRYVEPSED-AQRIKAVNCVFRGK------GYNTDWVGVVKSLEG---------- 104

Query: 374 GVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYENLQRL 420
                   +  VV+GAGGA +A+ Y   +     + + NRT E  + L
Sbjct: 105 ----VEVKEPVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKAL 148

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 Length = 271

 Score =  160 bits (408), Expect = 1e-46
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 14/169 (8%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCT 311
           + + + G P+ HSKSP ++ +  + +     +  +L   +D       + S    G + T
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
           +P KE A    DE+   A   GAVN ++R + DG+L G NTD VG +S +E     RL+ 
Sbjct: 62  VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNTDGVGLLSDLE-----RLSF 115

Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420
                    G   ++IGAGGA + +     +    V I NRT    + L
Sbjct: 116 I------RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEEL 158

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* Length = 272

 Score =  159 bits (404), Expect = 4e-46
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 14/169 (8%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCT 311
            ++ + G P+  SKSP++ N+          ++  L   D   +    +      G + T
Sbjct: 2   DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNIT 61

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
            P KE A +  DE    AK   A N + +   DGKL+  NTD +G ++ ++     RLN 
Sbjct: 62  SPFKERAYQLADEYSQRAKLAEACNTLKKLD-DGKLYADNTDGIGLVTDLQ-----RLNW 115

Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420
                     +  +++GAGGA K +          +V+ANRT+   + L
Sbjct: 116 L------RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKEL 158

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* Length = 281

 Score =  158 bits (403), Expect = 6e-46
 Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 15/176 (8%)

Query: 248 QMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDF 305
            M      + + G P+ HSKSP ++    +    + ++    V  D   +  + + +   
Sbjct: 3   AMASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGG 62

Query: 306 AGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGL 365
            G + T+P KE A +  D +   A+  GAVN + +   DG++ G NTD  G +  +    
Sbjct: 63  RGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLD-DGEILGDNTDGEGLVQDLL--- 118

Query: 366 RGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYENLQRL 420
                V       L G   ++IGAGGA + +       + A + + NRT+   ++L
Sbjct: 119 --AQQVL------LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQL 166

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} Length = 272

 Score =  155 bits (395), Expect = 7e-45
 Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 15/171 (8%)

Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSC 310
           +  + +IG+P+ H+KSP+++    ++      +  +    DD       + S    G + 
Sbjct: 2   SDRYAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGKGMNI 61

Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLN 370
           T P K  A +  D     A+   A N +     DG++   N D +G +  IE+     L 
Sbjct: 62  TAPFKLRAFELADRRSERAQLARAANALKFE--DGRIVAENFDGIGLLRDIEE----NLG 115

Query: 371 VSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYENLQRL 420
                   L  +  +++GAGGA +       +A  + +VIANR       L
Sbjct: 116 EP------LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALAL 160

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 65/407 (15%), Positives = 118/407 (28%), Gaps = 131/407 (32%)

Query: 3   SPNLLV----ASG-SKLVSGGMRKNPTLICVPIMGESVDKMV-VDMGKANASGADLVEI- 55
           + N+L+     SG + +             +        K+  +++   N S   ++E+ 
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD------FKIFWLNLKNCN-SPETVLEML 202

Query: 56  -----RLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL 110
                ++D   N+  R +  + IK          R + +   Y       + VL      
Sbjct: 203 QKLLYQID--PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENCLLVLL----- 251

Query: 111 GADYIDV-ELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADI 169
                +V   +    FN          CK+++++   Q T                    
Sbjct: 252 -----NVQNAKAWNAFN--------LSCKILLTTRFKQVT-------------------- 278

Query: 170 VKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIV 229
                   D    A    I++        L   E     + L  K+        L+    
Sbjct: 279 --------DFLSAATTTHISLDHHSM--TLTPDE----VKSLLLKY--------LDCRPQ 316

Query: 230 SAPGQ-----P--------TIKDLLDLY-NFRQMGPDTKVFGIIGKPVGHSKSPILYNEA 275
             P +     P        +I+D L  + N++ +  D K+  II   +   + P  Y + 
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLE-PAEYRKM 374

Query: 276 FKSVGFNGVF---VH----LL-----------VDDIAKFFQTYS--SNDFAGFSCTIP-- 313
           F  +    VF    H    LL           V  +      YS         + +IP  
Sbjct: 375 FDRL---SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG----KLFGYNTDYVG 356
           + E  VK  +E       +   N      SD      L  Y   ++G
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 9e-04
 Identities = 26/163 (15%), Positives = 50/163 (30%), Gaps = 32/163 (19%)

Query: 237 IKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKF 296
            KD+ D+   + +    ++  II      S +  L+     S     V          KF
Sbjct: 35  CKDVQDM--PKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQEEMV---------QKF 82

Query: 297 FQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFG-YNTDYV 355
            +     ++  F  +    E              +   +    R  +D ++F  YN   +
Sbjct: 83  VEEVLRINY-KFLMSPIKTEQ-------RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 356 GAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGK-ALA 397
                +   L   L  +  V         ++ G  G+GK  +A
Sbjct: 135 QPYLKLRQALL-ELRPAKNV---------LIDGVLGSGKTWVA 167

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} Length = 144

 Score = 42.1 bits (100), Expect = 6e-05
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 9/57 (15%)

Query: 371 VSGGVSSA---LAGKLF----VVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420
           VS  + S    +  K      +++G G     +A        +V +A R  ++++  
Sbjct: 6   VS--IPSIVYDIVRKNGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAF 60

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR 419
           + G    V+G G  G ++A    A GA+V +  R  + L R
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLAR 193

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           L GK  +V GA  G G+ +AY     GA VV+  R+ E LQ++
Sbjct: 26  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	420
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	100.0
4h3d_A	258	3-dehydroquinate dehydratase; structural genomics,	100.0
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	100.0
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	100.0
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	100.0
3l9c_A	259	3-dehydroquinate dehydratase; AROD, amino-acid bio	100.0
2ocz_A	231	3-dehydroquinate dehydratase; structural genomics,	100.0
2egz_A	219	3-dehydroquinate dehydratase; aquifex aeolicus VF5	100.0
2ox1_A	196	3-dehydroquinate dehydratase; (beta-alpha)8 barrel	100.0
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	100.0
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	100.0
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	100.0
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	100.0
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	100.0
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	100.0
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	100.0
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	100.0
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	100.0
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	100.0
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	100.0
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	100.0
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	100.0
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	100.0
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	100.0
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	100.0
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	100.0
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.91
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	99.9
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	99.51
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.7
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.67
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.6
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.55
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	97.81
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.59
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.5
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	97.42
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.27
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	97.26
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.13
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.12
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.07
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	97.05
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.92
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	96.91
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.8
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.77
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.72
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.66
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.61
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.56
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	96.55
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	96.52
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	96.43
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.37
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	96.34
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.28
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.27
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.27
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.27
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	96.26
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.17
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.14
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.14
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.09
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.09
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.07
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.05
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	96.0
4dqx_A	277	Probable oxidoreductase protein; structural genomi	95.97
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	95.96
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	95.96
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	95.93
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	95.93
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	95.91
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	95.86
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	95.85
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	95.85
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	95.84
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	95.83
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	95.83
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.81
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	95.81
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	95.8
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	95.8
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	95.8
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	95.8
3rih_A	293	Short chain dehydrogenase or reductase; structural	95.78
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	95.72
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.71
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	95.68
3cxt_A	291	Dehydrogenase with different specificities; rossma	95.66
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	95.64
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	95.63
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	95.63
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	95.63
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	95.6
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	95.57
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	95.56
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.55
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	95.5
1xhl_A	297	Short-chain dehydrogenase/reductase family member	95.5
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	95.5
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	95.43
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	95.32
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.31
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	95.31
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	95.3
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.3
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	95.28
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	95.26
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.22
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.19
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	95.16
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	95.15
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	95.15
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	95.12
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	95.12
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	95.09
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	95.07
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	95.05
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	95.02
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	95.01
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	94.98
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.98
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.97
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	94.97
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	94.97
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	94.92
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	94.87
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	94.86
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	94.83
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	94.79
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	94.78
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	94.75
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	94.74
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	94.74
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	94.74
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	94.73
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.72
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	94.7
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	94.7
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	94.7
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	94.69
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.66
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.66
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	94.53
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	94.53
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	94.52
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	94.51
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	94.48
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	94.47
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	94.44
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	94.41
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	94.3
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.29
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	94.29
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	94.26
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	94.25
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.25
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.24
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	94.22
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	94.11
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	94.11
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	94.08
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	94.05
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	94.01
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	94.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	93.97
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	93.92
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.91
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	93.91
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	93.9
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	93.89
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	93.88
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	93.86
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	93.86
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	93.84
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	93.84
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	93.82
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	93.76
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	93.75
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	93.74
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	93.73
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	93.72
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	93.72
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	93.65
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	93.6
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	93.55
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.55
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	93.54
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	93.53
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	93.46
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	93.42
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	93.41
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	93.4
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	93.39
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	93.29
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	93.22
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	93.21
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	93.18
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	93.17
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	93.17
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	93.17
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	93.17
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	93.15
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	93.14
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	93.11
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	93.08
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	93.07
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	93.07
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	93.06
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	93.02
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	93.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	92.98
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	92.97
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	92.96
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	92.91
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	92.9
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	92.87
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	92.82
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	92.78
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	92.73
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	92.72
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	92.72
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	92.67
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	92.66
4eye_A	342	Probable oxidoreductase; structural genomics, niai	92.59
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	92.55
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	92.54
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	92.53
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	92.52
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	92.48
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	92.45
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	92.44
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	92.41
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	92.38
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	92.37
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	92.34
1yx1_A	264	Hypothetical protein PA2260; structural genomics,	92.34
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	92.3
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	92.29
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	92.25
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	92.22
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	92.22
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	92.22
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	92.2
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	92.18
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	92.11
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	92.11
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	92.09
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	92.08
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	92.03
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	92.02
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	91.94
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	91.94
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	91.88
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	91.81
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	91.79
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	91.66
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	91.64
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	91.64
2bry_A	497	NEDD9 interacting protein with calponin homology a	91.63
3gms_A	340	Putative NADPH:quinone reductase; structural genom	91.61
1tx2_A	297	DHPS, dihydropteroate synthase; folate biosynthesi	91.6
3oa3_A	288	Aldolase; structural genomics, seattle structural	91.57
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	91.57
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	91.52
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	91.52
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	91.51
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	91.48
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	91.46
1aj0_A	282	DHPS, dihydropteroate synthase; antibiotic, resist	91.45
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	91.43
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	91.43
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	91.42
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	91.39
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	91.35
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.32
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	91.32
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	91.3
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	91.3
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	91.27
4ezb_A	317	Uncharacterized conserved protein; structural geno	91.25
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	91.22
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	91.2
1rqb_A	539	Transcarboxylase 5S subunit; TIM-barrel, carbamyla	91.19
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	91.17
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	91.13
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	91.07
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	91.03
2yci_X	271	5-methyltetrahydrofolate corrinoid/iron sulfur PR	91.0
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	90.92
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	90.92
3tr9_A	314	Dihydropteroate synthase; biosynthesis of cofactor	90.9
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	90.89
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	90.88
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	90.86
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	90.81
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	90.77
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	90.74
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	90.71
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	90.7
4hb7_A	270	Dihydropteroate synthase; transferase; 1.95A {Stap	90.68
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	90.65
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	90.64
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	90.59
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	90.58
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.57
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	90.51
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	90.5
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	90.49
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	90.46
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	90.33
2dqw_A	294	Dihydropteroate synthase; dimer, structural genomi	90.32
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	90.27
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	90.18
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	90.08
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	90.0
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	89.97
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	89.94
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	89.91
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	89.87
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	89.82
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	89.69
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	89.67
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	89.65
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	89.63
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	89.57
3ceu_A	210	Thiamine phosphate pyrophosphorylase; TIM barrel-l	89.57
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	89.46
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	89.46
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	89.42
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	89.39
2vp8_A	318	Dihydropteroate synthase 2; RV1207 transferase, fo	89.38
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	89.36
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	89.26
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	89.25
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	89.25
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	89.25
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	89.25
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	89.2
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	89.16
1q7z_A	566	5-methyltetrahydrofolate S-homocysteine methyltran	89.15
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	89.12
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	89.12
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	89.1
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	89.02
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	88.99
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	88.96
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	88.86
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	88.84
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	88.76
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	88.71
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	88.64
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	88.6
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	88.58
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	88.49
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	88.43
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	88.4
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	88.4
2q02_A	272	Putative cytoplasmic protein; structural genomics,	88.39
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	88.34
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	88.34
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	88.31
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	88.3
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	88.22
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	88.19
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	88.18
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	88.15
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	88.15
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	88.14
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	87.99
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	87.9
4f6c_A	427	AUSA reductase domain protein; thioester reductase	87.82
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	87.78
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	87.77
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	87.73
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	87.69
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	87.65
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	87.63
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	87.62
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	87.61
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	87.57
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	87.54
1eye_A	280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	87.37
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	87.35
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	87.27
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	87.25
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	87.19
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	87.1
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	86.85
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	86.78
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	86.77
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	86.73
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	86.67
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	86.64
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	86.55
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	86.53
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	86.43
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	86.42
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	86.36
3lmz_A	257	Putative sugar isomerase; structural genomics, joi	86.24
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	86.01
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	85.92
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	85.88
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	85.87
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	85.87
2y5s_A	294	DHPS, dihydropteroate synthase; transferase, folat	85.84
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	85.8
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	85.64
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	85.64
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	85.63
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	85.59
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	85.54
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	85.46
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	85.46
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	85.42
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	85.39
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	85.38
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	85.37
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	85.33
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	85.28
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	85.26
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	85.25
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	85.18
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	85.18
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	85.09
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	85.08
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	85.01
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	84.87
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	84.84
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	84.82
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	84.8
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	84.78
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	84.75
2pgw_A	384	Muconate cycloisomerase; enolase superfamily, octa	84.73
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	84.69
3e49_A	311	Uncharacterized protein DUF849 with A TIM barrel;	84.67
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	84.65
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	84.59
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	84.54
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	84.53
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	84.51
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	84.5
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	84.47
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	84.24
1oy0_A	281	Ketopantoate hydroxymethyltransferase; domain swap	84.17
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	83.86
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	83.81
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	83.81
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	83.79
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	83.68
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	83.66
3eeg_A	325	2-isopropylmalate synthase; 11106D, beta barrel, P	83.45
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	83.35
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	83.3
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	83.23
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	83.21
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	83.18
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	83.17
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	83.13
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	83.12
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	82.91
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	82.9
3vni_A	294	Xylose isomerase domain protein TIM barrel; D-psic	82.89
2h9a_B	310	CO dehydrogenase/acetyl-COA synthase, iron- sulfur	82.75
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	82.71
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	82.66
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	82.63
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	82.62
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	82.4
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	82.2
4djd_C	446	C/Fe-SP, corrinoid/iron-sulfur protein large subun	82.19
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	82.16
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	82.1
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	82.06
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	82.03
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	82.01
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	81.89
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	81.86
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	81.83
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	81.73
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	81.63
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	81.63
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	81.6
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	81.57
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	81.56
2hzg_A	401	Mandelate racemase/muconate lactonizing enzyme/EN	81.56
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	81.54
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	81.52
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	81.48
1lnq_A	336	MTHK channels, potassium channel related protein;	81.47
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	81.46
4djd_D	323	C/Fe-SP, corrinoid/iron-sulfur protein small subun	81.36
2zvr_A	290	Uncharacterized protein TM_0416; hyperthermophIle,	81.33
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	81.32
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	81.29
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	81.29
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	81.25

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=100.00  E-value=3.2e-97  Score=781.10  Aligned_cols=399  Identities=76%  Similarity=1.180  Sum_probs=361.1

Q ss_pred             CCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH
Q 014691           21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER  100 (420)
Q Consensus        21 ~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~  100 (420)
                      +++|+|||||+++|++|++.+++++...|+|+||||+|+|.+.++.++++.+++..++|+|||+|+++|||.++.++++|
T Consensus         2 ~~~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRvD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   81 (523)
T 2o7s_A            2 KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPTLFTYRPKWEGGQYEGDENER   81 (523)
T ss_dssp             CSCCEEEEEECCSSHHHHHHHHHHHHHHTCSEEEEEGGGCSSCCHHHHHHHHHHHCSSCEEEECCBGGGTSSBCSCHHHH
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHHhhhcCCCEEEEEEecccccChHHHHHHHHhcCCCcEEEEecccccCCCCCCCHHHH
Confidence            57899999999999999999999888889999999999998776666888888888999999999999999999999999


Q ss_pred             HHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHH
Q 014691          101 VDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDIT  180 (420)
Q Consensus       101 ~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~  180 (420)
                      +++|+.++++|+||||||++.+++.++.+...+..++|||+|||||++||+++++.++|++|.++||||+|||+||++.+
T Consensus        82 ~~ll~~~~~~~~~yiDvEl~~~~~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~~~~~~~~~~~~gaDivKia~~a~~~~  161 (523)
T 2o7s_A           82 RDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIA  161 (523)
T ss_dssp             HHHHHHHHHHTCSEEEEEHHHHHHHHHHTTTCCCTTCEEEEEEECSSCCCCHHHHHHHHHHHHTTTCSEEEEEEECSSGG
T ss_pred             HHHHHHHHHhCCCEEEEECCCchHHHHHHHHhccCCCEEEEEcccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHH
Confidence            99999999999999999999998888877665556899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhccccCCCceEEeeec
Q 014691          181 DVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIG  260 (420)
Q Consensus       181 D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~~~~~~~~~~~v~G  260 (420)
                      |++++++++.+.+.|+|+||||+.|++||+++++|||++||++++.++++||||+++++++++|++.+++++|++|||+|
T Consensus       162 D~~~l~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lt~~~l~~~~~sApGQ~~~~~l~~~~~~~~~~~~~~~~~viG  241 (523)
T 2o7s_A          162 DVARMFHITSKAQVPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG  241 (523)
T ss_dssp             GHHHHHHHHHHCSSCEEEEEESGGGTHHHHCTTTTTCSEEECBSSTTCCSSTTCCBHHHHHHTSCGGGCCTTCEEEEEEE
T ss_pred             HHHHHHHHHhhcCCCEEEEEcCCCCchhhhhhhhcCCceeecCCCccccCCCCCCcHHHHHHHHhhhhccccceEEEEEC
Confidence            99999999888889999999999999999999999999999999865558999999999999999999999999999999


Q ss_pred             cCccccccHHHHHHHHHHcCCCceeeccccccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEE
Q 014691          261 KPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIR  340 (420)
Q Consensus       261 ~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~  340 (420)
                      +||+||+||.|||++|+++|+|+.|.++++++++++++.++.++|.|+|||||||++|++|+|++++.|+.+||||||++
T Consensus       242 ~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~~l~~~~~~~~~~~~~G~nVTiP~K~~i~~~ld~~~~~A~~iGAvNti~~  321 (523)
T 2o7s_A          242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQCCDEVDPLAKSIGAVNTILR  321 (523)
T ss_dssp             SSCTTCCHHHHHHHHHHHTTCSEEEEEEECSCHHHHHHHTCSTTEEEEEECTTCHHHHHHHCSEECHHHHHHTCCSEEEE
T ss_pred             CCccCCccHHHHHHHHHHcCCCcEEEeEEcchHHHHHHHHhcCCCCEEEECCCCHHHHHHHhcccCHHHHHhCCCeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eccCCeEEEEecCHHHHHHHHHhhhccCCCCCC--CcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          341 RQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSG--GVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       341 ~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~--~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      +..+|+|+||||||.||+.+|+..+....+...  .....+++|+++|+||||+|++++++|.+.|++|+++||+.++++
T Consensus       322 ~~~~gk~~g~nTD~~G~~~~l~~~~~~~~~~~~~~~~~~~l~~k~vlV~GaGGig~aia~~L~~~G~~V~i~~R~~~~a~  401 (523)
T 2o7s_A          322 RKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERAL  401 (523)
T ss_dssp             CTTTCCEEEECCHHHHHHHHHHHHC-------------------CEEEECCSHHHHHHHHHHHHHCC-CEEEESSHHHHH
T ss_pred             ecCCCeEEEEcCCHHHHHHHHHHhhhhccccccccccccccCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            622799999999999999999876421000000  001246789999999999999999999999999999999999887


Q ss_pred             c
Q 014691          419 R  419 (420)
Q Consensus       419 ~  419 (420)
                      +
T Consensus       402 ~  402 (523)
T 2o7s_A          402 E  402 (523)
T ss_dssp             H
T ss_pred             H
Confidence            5

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*

Probab=100.00  E-value=2.2e-58  Score=443.47  Aligned_cols=234  Identities=29%  Similarity=0.461  Sum_probs=207.4

Q ss_pred             cccccCCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhH----HHHHHhhC-CCcEEEEeccC
Q 014691           13 KLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN----IKTLIKES-PVPTLFTYRPI   87 (420)
Q Consensus        13 ~~~~~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~----l~~l~~~~-~~PiI~T~R~~   87 (420)
                      |+..-.++..+|+|||||+++|.+|++++++++...++|+||||+|+|.+..+.+.    +..+++.. ++|+|||+|++
T Consensus         9 ~v~~~~ig~g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~l~~~~~~~~v~~~l~~lr~~~~~lPiI~T~Rt~   88 (258)
T 4h3d_A            9 QVKNITIGEGRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPLLFTFRSV   88 (258)
T ss_dssp             EETTEEETSSSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCTTSCEEEECCCG
T ss_pred             EEcCEEeCCCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeeccccccCCHHHHHHHHHHHHHhcCCCCEEEEEech
Confidence            44444555678999999999999999999999988999999999999997755433    33444433 79999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHc
Q 014691           88 WEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQAS  165 (420)
Q Consensus        88 ~eGG~~~~~~~~~~~ll~~~~~~~-~d~iDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~  165 (420)
                      +|||.++.++++|+++++.+++.+ +||||||+..+++..+.+.. .+++++|||+|||||++||+++|+.+++.+|.++
T Consensus        89 ~EGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~kiI~S~Hdf~~TP~~~el~~~~~~~~~~  168 (258)
T 4h3d_A           89 VEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRMQEL  168 (258)
T ss_dssp             GGTCSCCCCHHHHHHHHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHT
T ss_pred             hhCCCCCCCHHHHHHHHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEEEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999988 99999999999988888763 4578999999999999999999999999999999


Q ss_pred             CCCEEEEEeecCCHHHHHHHHHHhcc-----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhH
Q 014691          166 GADIVKFATTALDITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL  240 (420)
Q Consensus       166 gaDivKia~~~~s~~D~~~ll~~~~~-----~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l  240 (420)
                      ||||+|||+||++.+|+++|++++.+     .+.|+|+|+||+.|++||+++++|||++||++++++  +||||+++++|
T Consensus       169 gaDIvKia~~~~~~~D~l~Ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~fGS~lTf~~~~~~--sAPGQl~~~el  246 (258)
T 4h3d_A          169 GADLPKIAVMPQNEKDVLVLLEATNEMFKIYADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKSV--SAPGQISFKEL  246 (258)
T ss_dssp             TCSEEEEEECCSSHHHHHHHHHHHHHHHHHTCSSCBEEEECTGGGGGGGTCHHHHCBCEEECBCC-----CTTCCBHHHH
T ss_pred             CCCEEEEEEccCCHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChHHHHHHHHhCCceEeccCCCC--CCCCCCCHHHH
Confidence            99999999999999999999998653     378999999999999999999999999999999864  99999999999


Q ss_pred             HHHHhccc
Q 014691          241 LDLYNFRQ  248 (420)
Q Consensus       241 ~~~~~~~~  248 (420)
                      +++|++.+
T Consensus       247 ~~~l~lL~  254 (258)
T 4h3d_A          247 NSVLNLLH  254 (258)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998753

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=2e-57  Score=436.60  Aligned_cols=233  Identities=28%  Similarity=0.368  Sum_probs=210.0

Q ss_pred             ccccccCCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch----hHHHHHHhhC-CCcEEEEecc
Q 014691           12 SKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR----ENIKTLIKES-PVPTLFTYRP   86 (420)
Q Consensus        12 ~~~~~~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~----~~l~~l~~~~-~~PiI~T~R~   86 (420)
                      .|+....+..++|+|||||+++|.++++.+++++...++|+||||+|+|.+.++.    +++..+++.. ++|+|||+|+
T Consensus         8 ~~v~~~~~g~~~p~Icv~l~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt   87 (257)
T 2yr1_A            8 IKVRNIWIGGTEPCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGEIPILFTIRS   87 (257)
T ss_dssp             EEETTEEESSSSCEEEEEECCSSHHHHHHHHHHHHHSCCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHSSSCCEEEECCC
T ss_pred             EEEeeeeeCCCCcEEEEEecCCCHHHHHHHHHHHhhcCCCEEEEEeecccccCcHHHHHHHHHHHHHhccCCCEEEEEee
Confidence            4667777889999999999999999999999998888999999999999876543    2445566665 8999999999


Q ss_pred             CCCCCCC-CCCHHHHHHHHHHHHHhC-CcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHH
Q 014691           87 IWEGGQY-DGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQ  163 (420)
Q Consensus        87 ~~eGG~~-~~~~~~~~~ll~~~~~~~-~d~iDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~  163 (420)
                      ++|||.+ ..++++|+++++.++++| +||||||+..++ ..+++.. .+++++|||+|||||++||+.+++.+++++|.
T Consensus        88 ~~eGG~~~~~~~~~~~~ll~~~~~~g~~d~iDvEl~~~~-~~~~l~~~~~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~  166 (257)
T 2yr1_A           88 EREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGE-RIADVRRMTEECSVWLVVSRHYFDGTPRKETLLADMRQAE  166 (257)
T ss_dssp             TTTTCCCCSSCHHHHHHHHHHHHHHTCCSEEEEEGGGTT-HHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEECCCCh-hHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHHHHHH
Confidence            9999999 899999999999999999 999999999877 5555553 45689999999999999999999999999999


Q ss_pred             HcCCCEEEEEeecCCHHHHHHHHHHhcc----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHh
Q 014691          164 ASGADIVKFATTALDITDVARVFQITVH----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKD  239 (420)
Q Consensus       164 ~~gaDivKia~~~~s~~D~~~ll~~~~~----~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~  239 (420)
                      ++||||+|||+||++.+|++++++++.+    .+.|+|+||||+.|++||+++++|||++||+++++  ++||||+++++
T Consensus       167 ~~gaDivKia~~a~s~~D~l~ll~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~Tf~~l~~--~sAPGQl~~~e  244 (257)
T 2yr1_A          167 RYGADIAKVAVMPKSPEDVLVLLQATEEARRELAIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQ--SSAPGQIPIDD  244 (257)
T ss_dssp             HTTCSEEEEEECCSSHHHHHHHHHHHHHHHHHCSSCEEEEECTTTTHHHHHHGGGGTBCEEECBSSS--CSSTTCCBHHH
T ss_pred             hcCCCEEEEEeccCCHHHHHHHHHHHHHHhccCCCCEEEEECCCCcchHHHHHHHhCCceEecCCCC--CCCCCCCCHHH
Confidence            9999999999999999999999998754    36899999999999999999999999999999985  49999999999


Q ss_pred             HHHHHhcc
Q 014691          240 LLDLYNFR  247 (420)
Q Consensus       240 l~~~~~~~  247 (420)
                      ++++|++.
T Consensus       245 l~~~l~~l  252 (257)
T 2yr1_A          245 VRTVLSIL  252 (257)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999854

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*

Probab=100.00  E-value=1.5e-57  Score=441.04  Aligned_cols=234  Identities=28%  Similarity=0.429  Sum_probs=211.4

Q ss_pred             ccccccCCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch----hHHHHHHhhC-CCcEEEEecc
Q 014691           12 SKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR----ENIKTLIKES-PVPTLFTYRP   86 (420)
Q Consensus        12 ~~~~~~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~----~~l~~l~~~~-~~PiI~T~R~   86 (420)
                      .|+..-.++..+|+|||||+++|.++++.+++++...++|+||||+|+|.+.++.    +++..+++.. ++|+|||+|+
T Consensus        28 v~v~~~~~g~g~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt  107 (276)
T 3o1n_A           28 VTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRS  107 (276)
T ss_dssp             EEETTEEETSSSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCCSSCEEEECCB
T ss_pred             EEECCEEeCCCCcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEeccccccCcHHHHHHHHHHHHHhcCCCCEEEEEEE
Confidence            3455566777799999999999999999999998778999999999999976553    3344555555 8999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHH
Q 014691           87 IWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQA  164 (420)
Q Consensus        87 ~~eGG~~~~~~~~~~~ll~~~~~~~-~d~iDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~  164 (420)
                      ++|||.++.++++|+++|+.++++| |||||||+..+++.++++.. ++++++|||+|||||++||+.+++.+++++|.+
T Consensus       108 ~~eGG~~~~~~~~~~~ll~~~l~~g~~dyIDvEl~~~~~~~~~l~~~a~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~~  187 (276)
T 3o1n_A          108 AKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQE  187 (276)
T ss_dssp             GGGTCSBCCCHHHHHHHHHHHHHHTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHH
T ss_pred             hhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEECcCCHHHHHHHHHHHHhCCCEEEEEeecCCCCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999 99999999999888888874 357899999999999999999999999999999


Q ss_pred             cCCCEEEEEeecCCHHHHHHHHHHhcc-----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHh
Q 014691          165 SGADIVKFATTALDITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKD  239 (420)
Q Consensus       165 ~gaDivKia~~~~s~~D~~~ll~~~~~-----~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~  239 (420)
                      +||||+|||+||++.+|+++|++++.+     .++|+|+||||+.|++||+++++|||++||++++++  +||||+++++
T Consensus       188 ~GaDIvKia~~a~s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~GS~vTf~~l~~~--sAPGQl~~~~  265 (276)
T 3o1n_A          188 LGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGAISVAD  265 (276)
T ss_dssp             TTCSEEEEEECCSSHHHHHHHHHHHHHHHHHTCCSCCEEEECSGGGTHHHHCHHHHTCCEEECBSSCC--SSTTCCBHHH
T ss_pred             cCCCEEEEEecCCChHHHHHHHHHHHHHHhcCCCCCEEEEECCCchhhHHHHHHHhCCceEecCCCCC--CCCCCCCHHH
Confidence            999999999999999999999998754     578999999999999999999999999999999764  9999999999


Q ss_pred             HHHHHhcc
Q 014691          240 LLDLYNFR  247 (420)
Q Consensus       240 l~~~~~~~  247 (420)
                      |+++++..
T Consensus       266 l~~~l~~l  273 (276)
T 3o1n_A          266 LRTVLTIL  273 (276)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999864

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*

Probab=100.00  E-value=3.9e-57  Score=430.19  Aligned_cols=223  Identities=26%  Similarity=0.396  Sum_probs=196.0

Q ss_pred             CCcEEEEeecC-CCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch---hHHHHHHhhC-CCcEEEEeccCCCCCCCCCC
Q 014691           22 NPTLICVPIMG-ESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTLIKES-PVPTLFTYRPIWEGGQYDGD   96 (420)
Q Consensus        22 ~~~~icv~l~~-~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~---~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~   96 (420)
                      .+|+|||||++ +|.+|++.+++++.+.++|+||||+|+|.+.+..   +++..+++.. ++|+|||+|+++|||.++.+
T Consensus         2 ~~p~Icvpi~~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~   81 (238)
T 1sfl_A            2 THVEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFT   81 (238)
T ss_dssp             -CCEEEEEECCCC---CHHHHHHHHTTTTCSEEEEECTTSTTCCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCC
T ss_pred             CCCeEEEEecCCCCHHHHHHHHHHhhhcCCCEEEEEecccccCCHHHHHHHHHHHHHhccCCCEEEEeeccccCCCCCCC
Confidence            46899999999 9999999999998888999999999999876431   2333444444 78999999999999999999


Q ss_pred             HHHHHHHHHHHHHh-CCcEEEEEccc--ccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691           97 ENERVDVLRLAMEL-GADYIDVELQV--AREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus        97 ~~~~~~ll~~~~~~-~~d~iDiEl~~--~~~~~~~l~~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      +++|+++++.++++ ++||||||+..  +++..+.+.. .+++++|||+|||||++||+.+++.+++++|.++||||+||
T Consensus        82 ~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tp~~~el~~~~~~~~~~gaDivKi  161 (238)
T 1sfl_A           82 NDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKL  161 (238)
T ss_dssp             HHHHHHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEccCCCChHHHHHHHHHHHhcCCEEEEEecCCCCCcCHHHHHHHHHHHHHcCCCEEEE
Confidence            99999999999998 59999999998  8777777763 45689999999999999999999999999999999999999


Q ss_pred             EeecCCHHHHHHHHHHhcc----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691          173 ATTALDITDVARVFQITVH----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (420)
Q Consensus       173 a~~~~s~~D~~~ll~~~~~----~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~  246 (420)
                      |+||++.+|++++++++.+    .+.|+|+||||+.|++||+++++|||++||++++++  +||||+++++++++|++
T Consensus       162 a~~a~~~~D~l~ll~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tf~~l~~~--sAPGQl~~~el~~~l~~  237 (238)
T 1sfl_A          162 AVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEP--QAPGQIDVTDLKAQVTL  237 (238)
T ss_dssp             EECCSSHHHHHHHHHHHHHHHHHCSSEEEEEECTGGGHHHHHTGGGGTBCEEEEBSSCC--SSTTCCBHHHHHHHHTT
T ss_pred             EecCCCHHHHHHHHHHHHHHhhcCCCCEEEEECCCCchHHHHHHHHhCCCeeecCCCCC--CCCCCCCHHHHHHHHHh
Confidence            9999999999999998765    478999999999999999999999999999999864  99999999999999874

>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis, aromatic amino acid biosynthe schiff base, lyase; 1.60A {Streptococcus mutans}

Probab=100.00  E-value=1.6e-55  Score=422.45  Aligned_cols=232  Identities=25%  Similarity=0.383  Sum_probs=188.5

Q ss_pred             cccccccccc----cCCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh-CCCcEE
Q 014691            7 LVASGSKLVS----GGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SPVPTL   81 (420)
Q Consensus         7 ~~~~~~~~~~----~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI   81 (420)
                      ||.-|+...|    -.++.++|+|||||+++|.+|++ ++..+...++|+||||+|+|...+.......+++. .++|+|
T Consensus        14 ~~~~~~~~~~~~~~~~~g~g~pkIcvpl~~~t~~e~~-~~~~~~~~gaD~VElRvD~l~~~~~~~v~~~l~~~~~~~PiI   92 (259)
T 3l9c_A           14 LVPRGSHMASMTGGQQMGRGSMKIVVPVMPQNIEEAN-QLDLTRIDSTDIIEWRADYLVKDDILTVAPAIFEKFSGHEVI   92 (259)
T ss_dssp             SSCC----------------CCEEEEEECCSSHHHHH-HCCCTTCCTTCEEEEEGGGSCGGGHHHHHHHHHHHTTTSEEE
T ss_pred             cCcCcchhhhhcCCcEECCCCcEEEEEecCCCHHHHH-HHHHhhccCCCEEEEEeccccchhHHHHHHHHHHhcCCCcEE
Confidence            4455555443    35667899999999999999997 56655567999999999999853322223445554 589999


Q ss_pred             EEeccCCCCCCCCCCHHHHHHHHHHHHH-hCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHH
Q 014691           82 FTYRPIWEGGQYDGDENERVDVLRLAME-LGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVA  160 (420)
Q Consensus        82 ~T~R~~~eGG~~~~~~~~~~~ll~~~~~-~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~  160 (420)
                      ||+|+++|||.|+.++++|+++|+.+++ +++||||||+..+++.++++.    +..|||+|||||++||+  ++.++|+
T Consensus        93 ~T~Rt~~EGG~~~~~~~~y~~ll~~~~~~~~~dyIDVEl~~~~~~~~~l~----~~~kiI~S~Hdf~~tp~--el~~~~~  166 (259)
T 3l9c_A           93 FTLRTEKEGGNISLSNEDYLAIIRDIAALYQPDYIDFEYFSYRDVLEEMY----DFSNLILSYHNFEETPE--NLMEVFS  166 (259)
T ss_dssp             EECCBGGGTCSBCCCHHHHHHHHHHHHHHHCCSEEEEEHHHHGGGGGGGT----TCSSEEEEEEESSCCCT--THHHHHH
T ss_pred             EEEeehhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECcCCHHHHHHHH----hcCeEEEEeccCCCCHH--HHHHHHH
Confidence            9999999999999999999999999998 789999999999888877764    34599999999999998  8999999


Q ss_pred             HHHHcCCCEEEEEeecCCHHHHHHHHHHhcc-----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCC
Q 014691          161 RIQASGADIVKFATTALDITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQP  235 (420)
Q Consensus       161 ~~~~~gaDivKia~~~~s~~D~~~ll~~~~~-----~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~  235 (420)
                      +|.++||||+|||+||++.+|+++|++++..     .+.|+|+|+||+.|++||+++++|||++||++++++  +||||+
T Consensus       167 ~~~~~GaDIvKia~~a~s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~GS~lTf~~l~~~--sAPGQl  244 (259)
T 3l9c_A          167 ELTALAPRVVKIAVMPKNEQDVLDLMNYTRGFKTLNPNQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQE--SAPGQI  244 (259)
T ss_dssp             HHHHTCCSEEEEEECCSSHHHHHHHHHHHHHHHHHCTTSEEEEEECTGGGHHHHHTHHHHTBSEEECBC---------CC
T ss_pred             HHHHcCCCEEEEEecCCCHHHHHHHHHHHHHHHhccCCCCEEEEECCCCcccHHHHHHHhCCccccccCCCC--CCCCCC
Confidence            9999999999999999999999999999753     368999999999999999999999999999999864  999999


Q ss_pred             CHHhHHHHHhcc
Q 014691          236 TIKDLLDLYNFR  247 (420)
Q Consensus       236 ~~~~l~~~~~~~  247 (420)
                      ++++|+++|++.
T Consensus       245 ~~~el~~~l~~l  256 (259)
T 3l9c_A          245 SLADMRKIKEVL  256 (259)
T ss_dssp             BHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999999864

>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1}

Probab=100.00  E-value=1.5e-55  Score=417.26  Aligned_cols=217  Identities=25%  Similarity=0.326  Sum_probs=187.5

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh-CC-CcEEEEeccCCCCCCCCCCHHH
Q 014691           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SP-VPTLFTYRPIWEGGQYDGDENE   99 (420)
Q Consensus        22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~-~~-~PiI~T~R~~~eGG~~~~~~~~   99 (420)
                      ++|+|||||+++|.+|++.+++++.. ++|+||||+|+|.+.+ .+.+...++. .. +|+|||+|+++|||.++.++++
T Consensus         2 ~~~~Icvpi~~~t~~e~~~~~~~~~~-~~D~vElRvD~l~~~~-~~~v~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~   79 (231)
T 2ocz_A            2 NAMRIVAPVMPRHFDEAQAIDISKYE-DVNLIEWRADFLPKDE-IVAVAPAIFEKFAGKEIIFTLRTVQEGGNITLSSQE   79 (231)
T ss_dssp             -CCEEEEEECCSSHHHHHTCCGGGGT-TCSEEEEEGGGSCGGG-HHHHHHHHHHHTTTSEEEEECCBGGGTCSBCCCHHH
T ss_pred             CCCEEEEEeCCCCHHHHHHHHHHhcc-CCCEEEEEeccccccC-HHHHHHHHHHHcCCCcEEEEEeecccCCCCCCCHHH
Confidence            68999999999999999999988644 8999999999998654 3345443332 33 8999999999999999999999


Q ss_pred             HHHHHHHHHHhC-CcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCC
Q 014691          100 RVDVLRLAMELG-ADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALD  178 (420)
Q Consensus       100 ~~~ll~~~~~~~-~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s  178 (420)
                      |+++++.++++| +||||||+..++++++.+   + +.+|||+|||||++||  +++.+++++|.++||||+|||+||++
T Consensus        80 ~~~ll~~~~~~g~~d~iDvEl~~~~~~i~~~---~-~~~kvI~S~Hdf~~tp--~el~~~~~~~~~~gaDivKia~~a~~  153 (231)
T 2ocz_A           80 YVDIIKEINAIYNPDYIDFEYFTHKSVFQEM---L-DFPNLILSYHNFEETP--ENLMEAFSEMTKLAPRVVKIAVMPQS  153 (231)
T ss_dssp             HHHHHHHHHHHHCCSEEEEETTTTGGGGGGG---T-TCSSEEEEEEESSCCC--TTHHHHHHHHHHTCCSEEEEEECCSS
T ss_pred             HHHHHHHHHHcCCCCEEEEECCCCHHHHHHh---h-cCCeEEEEecCCCCCH--HHHHHHHHHHHHcCCCEEEEEeecCC
Confidence            999999999999 999999999887765544   3 3499999999999999  89999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc-----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhccc
Q 014691          179 ITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQ  248 (420)
Q Consensus       179 ~~D~~~ll~~~~~-----~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~~  248 (420)
                      .+|++++++++.+     .+.|+|+|+||+.|++||+++++|||++||++++.+  +||||++++++++++++.+
T Consensus       154 ~~D~l~ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~Tf~~l~~~--sAPGQl~~~el~~~l~~l~  226 (231)
T 2ocz_A          154 EQDVLDLMNYTRGFKTLNPEQEFATISMGKLGRLSRFAGDVIGSSWTYVSLDHV--SGPGQVTLNDMKRIIEVLE  226 (231)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEEEECHHHHGGGGGCHHHHTCCEEECBC--------CCCBHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhccCCCCEEEEEcCCCchhHHHHHHHhCCceEeccCCCC--CCCCCCCHHHHHHHHHHhh
Confidence            9999999998653     367999999999999999999999999999999764  9999999999999988653

>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A

Probab=100.00  E-value=3.8e-53  Score=397.89  Aligned_cols=211  Identities=28%  Similarity=0.412  Sum_probs=182.7

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch---hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHH
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERV  101 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~  101 (420)
                      +|||||+++|.++++.+++.   .++|+||||+|+|.+.+..   +.+..+++. .+|+|||+|+++|||.   ++++|+
T Consensus         2 ~icv~l~~~~~~~~~~~~~~---~~~D~vElRvD~l~~~~~~~v~~~~~~lr~~-~~PiI~T~R~~~eGG~---~~~~~~   74 (219)
T 2egz_A            2 LIAVPLDDTNFSENLKKAKE---KGADIVELRVDQFSDTSLNYVKEKLEEVHSQ-GLKTILTIRSPEEGGR---EVKNRE   74 (219)
T ss_dssp             EEEEEECSTTHHHHHHHHHH---HTCSEEEEEGGGCSCCCHHHHHHHHHHHHHT-TCEEEEECCCGGGTCC---CCTTHH
T ss_pred             EEEEEeCCCCHHHHHHHHHH---cCCCEEEEEeccccccCHHHHHHHHHHHHhc-CCcEEEEEeehhccCC---CHHHHH
Confidence            59999999999999888765   3899999999999876542   234445444 7999999999999998   678899


Q ss_pred             HHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHH
Q 014691          102 DVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDIT  180 (420)
Q Consensus       102 ~ll~~~~~~~~d~iDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~  180 (420)
                      ++++.++++ +||||||+..++ ..+.+. ..+..++|||+|||||++||+.+++.+++++|.++|| |+|||+||++.+
T Consensus        75 ~ll~~~~~~-~d~iDvEl~~~~-~~~~l~~~~~~~g~kvI~S~Hdf~~tp~~~el~~~~~~~~~~ga-ivKia~~a~~~~  151 (219)
T 2egz_A           75 ELFEELSPL-SDYTDIELSSRG-LLVKLYNITKEAGKKLIISYHNFELTPPNWIIREVLREGYRYGG-IPKIAVKANSYE  151 (219)
T ss_dssp             HHHHHHTTT-SSEEEEETTCHH-HHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTS-EEEEEEECSSHH
T ss_pred             HHHHHHHhc-CCEEEEEccCCc-cHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHHHHHHHcCC-EEEEEEccCCHH
Confidence            999999999 999999999841 111222 1234569999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhcc
Q 014691          181 DVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFR  247 (420)
Q Consensus       181 D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~  247 (420)
                      |++++++++.+.+.|+|+||||+.|++||+++++|||++||+++++  ++||||+++++++++|++.
T Consensus       152 D~l~ll~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tf~~l~~--~sAPGQl~~~el~~~l~~l  216 (219)
T 2egz_A          152 DVARLLCISRQVEGEKILISMGDYGKISRLAGYVFGSVITYCSLEK--AFAPGQIPLEEMVELRKKF  216 (219)
T ss_dssp             HHHHHHHHHTTSCSCBEEEEESSGGGGHHHHGGGGTBCEEECBCC-----CTTCCBHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEECCCcchhHHHHHHHhCCceEecCCCC--CCCCCCCCHHHHHHHHHHh
Confidence            9999999998888999999999999999999999999999999975  4999999999999999864

>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A {Archaeoglobus fulgidus}

Probab=100.00  E-value=2.1e-51  Score=379.27  Aligned_cols=193  Identities=28%  Similarity=0.442  Sum_probs=176.7

Q ss_pred             EEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHH
Q 014691           27 CVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRL  106 (420)
Q Consensus        27 cv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~  106 (420)
                      +|||+++|.+| +++++.     +|+||||+|+|.+.        ++ ..++|+|||+|+++|||.++.++++|+++++.
T Consensus         2 ~vpl~~~t~~~-~~~~~~-----aD~vElRvD~l~~~--------lr-~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~   66 (196)
T 2ox1_A            2 KLVATLSSPEE-LELAEK-----ADVVELRIDLFDFS--------GA-RVDKEKILTCRRVSDGGKFEGDERERIEKMKR   66 (196)
T ss_dssp             EEEEEECSHHH-HHHTTT-----CSEEEEETTTSCCT--------TS-CCCSEEEEECCBGGGTSSBCSCHHHHHHHHHH
T ss_pred             eeeEcCCCHHH-HHHHhc-----CCEEEEEEchhhhh--------HH-hcCCcEEEEEeecccCCCCCCCHHHHHHHHHH
Confidence            69999999999 887653     89999999999853        22 46799999999999999999999999999999


Q ss_pred             HHHhCC-cEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHH
Q 014691          107 AMELGA-DYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARV  185 (420)
Q Consensus       107 ~~~~~~-d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~l  185 (420)
                      ++++|+ ||||||+..+++.++       +++|||+|||||++||+++++.++++  +++| ||+|||+||++.+|++++
T Consensus        67 ~~~~g~~d~iDvEl~~~~~~i~-------~~~kvI~S~Hdf~~tp~~~~l~~~~~--~~~g-DivKia~~a~~~~D~l~l  136 (196)
T 2ox1_A           67 AFDSLNPDYVDLESDLPDSAFD-------FNCRIIESYHNFIRTPDYSELKGIVE--GRRG-DLVKIATMGKSKRDVETI  136 (196)
T ss_dssp             HHHHHCCSEEEEETTSCGGGCC-------CSSEEEEEEEESSCCCCHHHHHHHHH--TCCS-SEEEEEEECCSHHHHHHH
T ss_pred             HHHhCCCcEEEEECCCCHhHHh-------CCCEEEEEecCCCCCcCHHHHHHHHH--HHcC-CEEEEEEcCCCHHHHHHH
Confidence            999997 999999998876522       78999999999999999999999999  8899 999999999999999999


Q ss_pred             HHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhcc
Q 014691          186 FQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFR  247 (420)
Q Consensus       186 l~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~  247 (420)
                      ++++.+.+ |+|+||||+.|++||+++++|||++||+++++  ++||||+++++++++|++.
T Consensus       137 l~~~~~~~-p~I~~~MG~~G~~SRi~~~~~gs~~t~~~~~~--~sAPGQl~~~el~~~l~~l  195 (196)
T 2ox1_A          137 VRILTNYD-DVVAFLMGERFSFTRVLAAYLGSPFIYCYVGS--PKAPGQISLDDAREIISRL  195 (196)
T ss_dssp             HHHHHHCS-SEEEEEESGGGTHHHHHHHHTTCSEEEEESSS--CSSTTCCBHHHHHHHHHHH
T ss_pred             HHHHhhCC-CeEEEEcCCCchhHHHhHhhhCCceEeccCCC--CCCCCCCCHHHHHHHHHHh
Confidence            99987765 99999999999999999999999999999965  4999999999999998753

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=100.00  E-value=9e-46  Score=364.73  Aligned_cols=162  Identities=30%  Similarity=0.502  Sum_probs=147.7

Q ss_pred             ccccCCCceEEeeeccCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhh
Q 014691          246 FRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCD  323 (420)
Q Consensus       246 ~~~~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d  323 (420)
                      ...++.+|++|||||+||+||+||.|||++|+++|+|+.|.++++  ++|+++++.++.++|.|+|||||||++|++++|
T Consensus        24 ~~~i~~~t~~~gviG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~lD  103 (312)
T 3t4e_A           24 AMDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVD  103 (312)
T ss_dssp             ------CCEEEEEEESCCTTCSHHHHHHHHHHHHTCSEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTSHHHHGGGCS
T ss_pred             ccccCCCceEEEEECCCccccccHHHHHHHHHHcCCCcEEEeEecCHHHHHHHHHHHhhCCCCEEEECchhHHHHHHHhh
Confidence            345778899999999999999999999999999999999999998  489999999999999999999999999999999


Q ss_pred             cccHHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhC
Q 014691          324 EVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAK  403 (420)
Q Consensus       324 ~l~~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~  403 (420)
                      ++|+.|+.+||||||+++  +|+|+||||||.||+++|++..           .++++|+++|+||||+||+++++|.+.
T Consensus       104 ~ls~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~~-----------~~l~gk~~lVlGAGGaaraia~~L~~~  170 (312)
T 3t4e_A          104 ELTPAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKESG-----------FDMRGKTMVLLGAGGAATAIGAQAAIE  170 (312)
T ss_dssp             EECHHHHHHTCCSEEEEE--TTEEEEECHHHHHHHHHHHHTT-----------CCCTTCEEEEECCSHHHHHHHHHHHHT
T ss_pred             hcCHHHHHhCceeEEEec--CCEEEEeCCcHHHHHHHHHhcC-----------CCcCCCEEEEECcCHHHHHHHHHHHHc
Confidence            999999999999999987  8999999999999999997641           467899999999999999999999999


Q ss_pred             CC-eEEEEeCC---hhhhhcC
Q 014691          404 GA-RVVIANRT---YENLQRL  420 (420)
Q Consensus       404 g~-~i~v~nR~---~~ka~~L  420 (420)
                      |+ +|+|+||+   .+||++|
T Consensus       171 G~~~v~v~nRt~~~~~~a~~l  191 (312)
T 3t4e_A          171 GIKEIKLFNRKDDFFEKAVAF  191 (312)
T ss_dssp             TCSEEEEEECSSTHHHHHHHH
T ss_pred             CCCEEEEEECCCchHHHHHHH
Confidence            99 99999999   8888753

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=2.9e-45  Score=356.29  Aligned_cols=159  Identities=28%  Similarity=0.464  Sum_probs=148.4

Q ss_pred             cCCCceEEeeeccCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhccc
Q 014691          249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (420)
Q Consensus       249 ~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~  326 (420)
                      ++.+|++|||||+||+||+||.|||++|+++|+|+.|.++++  ++|.++++.++.++|.|+|||||||+++++++|++|
T Consensus         1 ~s~~t~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~v~~l~~~~~~G~nVTiP~K~~v~~~ld~ls   80 (282)
T 3fbt_A            1 MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCGGLNVTIPYKVEVMKELYEIS   80 (282)
T ss_dssp             --CCCEEEEEEESSCCCCHHHHHHHHHHHHHTCCEEEEEEECCGGGHHHHHHHHHHTTCCEEEECTTCTTGGGGGCSEEC
T ss_pred             CCCcceEEEEECCCccccchHHHHHHHHHHcCCCcEEEEEECCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhcC
Confidence            356799999999999999999999999999999999999988  579999999988999999999999999999999999


Q ss_pred             HHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-
Q 014691          327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-  405 (420)
Q Consensus       327 ~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-  405 (420)
                      +.|+.+||||||+++  +|+|+||||||.||+++|++..           .++++|+++|+|+||+||+++++|.+.|+ 
T Consensus        81 ~~A~~iGAVNTv~~~--~g~l~G~NTD~~G~~~~L~~~~-----------~~~~~k~vlvlGaGGaaraia~~L~~~G~~  147 (282)
T 3fbt_A           81 EKARKIGAVNTLKFS--REGISGFNTDYIGFGKMLSKFR-----------VEIKNNICVVLGSGGAARAVLQYLKDNFAK  147 (282)
T ss_dssp             HHHHHHTCCCEEEEC--SSCEEEECCHHHHHHHHHHHTT-----------CCCTTSEEEEECSSTTHHHHHHHHHHTTCS
T ss_pred             HHHHHcCCcceEEee--CCEEEeeCCcHHHHHHHHHHcC-----------CCccCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence            999999999999997  8999999999999999997631           45789999999999999999999999999 


Q ss_pred             eEEEEeCChhhhhcC
Q 014691          406 RVVIANRTYENLQRL  420 (420)
Q Consensus       406 ~i~v~nR~~~ka~~L  420 (420)
                      +|+|+|||.+||++|
T Consensus       148 ~v~v~nRt~~ka~~L  162 (282)
T 3fbt_A          148 DIYVVTRNPEKTSEI  162 (282)
T ss_dssp             EEEEEESCHHHHHHH
T ss_pred             EEEEEeCCHHHHHHH
Confidence            999999999999753

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=100.00  E-value=6.7e-45  Score=354.14  Aligned_cols=160  Identities=26%  Similarity=0.441  Sum_probs=146.2

Q ss_pred             cCCCceEEeeeccCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhccc
Q 014691          249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (420)
Q Consensus       249 ~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~  326 (420)
                      ++.++++|||||+||+||+||.|||++|+++|+|+.|.++++  +++.++++.++.++|+|+|||||||+++++++|++|
T Consensus         4 ~~~~m~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~ld~l~   83 (281)
T 3o8q_A            4 MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLT   83 (281)
T ss_dssp             ----CEEEEEECCSSSCCCHHHHHHHHHHHTTCCEEEEEECCCTTCHHHHHHHHHHTTCCEEEECTTSHHHHHHHCSEEC
T ss_pred             ccccccEEEEECCCCCccCcHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECCccHHHHHHHHhhcC
Confidence            455688999999999999999999999999999999999998  489999999988999999999999999999999999


Q ss_pred             HHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-
Q 014691          327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-  405 (420)
Q Consensus       327 ~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-  405 (420)
                      +.|+.+||||||++.+ +|+|+||||||.||+++|++.           +.++++|+++|+|+||+||+++++|.+.|+ 
T Consensus        84 ~~A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~L~~~-----------~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~  151 (281)
T 3o8q_A           84 ERARLAGAVNTLKKLD-DGEILGDNTDGEGLVQDLLAQ-----------QVLLKGATILLIGAGGAARGVLKPLLDQQPA  151 (281)
T ss_dssp             HHHHHHTCCSEEEECT-TSCEEEECCHHHHHHHHHHHT-----------TCCCTTCEEEEECCSHHHHHHHHHHHTTCCS
T ss_pred             HHHHhhCeeeEEEEcC-CCcEEEEecHHHHHHHHHHHh-----------CCCccCCEEEEECchHHHHHHHHHHHhcCCC
Confidence            9999999999999852 899999999999999999653           146789999999999999999999999998 


Q ss_pred             eEEEEeCChhhhhcC
Q 014691          406 RVVIANRTYENLQRL  420 (420)
Q Consensus       406 ~i~v~nR~~~ka~~L  420 (420)
                      +|+|+||+.+++++|
T Consensus       152 ~v~v~~R~~~~a~~l  166 (281)
T 3o8q_A          152 SITVTNRTFAKAEQL  166 (281)
T ss_dssp             EEEEEESSHHHHHHH
T ss_pred             eEEEEECCHHHHHHH
Confidence            999999999998753

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=100.00  E-value=4.9e-45  Score=355.53  Aligned_cols=157  Identities=29%  Similarity=0.428  Sum_probs=146.7

Q ss_pred             CceEEeeeccCccccccHHHHHHHHHHcCCCceeeccc-------cccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhc
Q 014691          252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLL-------VDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDE  324 (420)
Q Consensus       252 ~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~-------~~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~  324 (420)
                      +|++|||||+||+||+||.|||++|+++|+|+.|.+++       .++++++++.++.++|.|+|||||||++|++++|+
T Consensus         3 ~t~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~lD~   82 (283)
T 3jyo_A            3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE   82 (283)
T ss_dssp             CCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEETTSTTTTTCCHHHHHHHHHHTTCCEEEECTTCTTTTGGGSSE
T ss_pred             CceEEEEECCCccccccHHHHHHHHHHcCCCeEEEEEEccccCCCHHHHHHHHHHHhhCCCCEEEECcccHHHHHHHhhh
Confidence            58999999999999999999999999999999999994       35899999999989999999999999999999999


Q ss_pred             ccHHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCC
Q 014691          325 VDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKG  404 (420)
Q Consensus       325 l~~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g  404 (420)
                      +|+.|+.+||||||++++ +|+|+||||||.||+++|++..           .++++|+++|+|+||+||+++++|...|
T Consensus        83 l~~~A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~~-----------~~l~~k~vlVlGaGG~g~aia~~L~~~G  150 (283)
T 3jyo_A           83 VSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEGL-----------PNAKLDSVVQVGAGGVGNAVAYALVTHG  150 (283)
T ss_dssp             ECHHHHHHTCCCEEEECT-TSCEEEECHHHHHHHHHHHHHC-----------TTCCCSEEEEECCSHHHHHHHHHHHHTT
T ss_pred             CCHHHHHhCcceEEEECC-CCeEEEecCCHHHHHHHHHHhC-----------cCcCCCEEEEECCcHHHHHHHHHHHHCC
Confidence            999999999999999873 7999999999999999997652           3578999999999999999999999999


Q ss_pred             C-eEEEEeCChhhhhcC
Q 014691          405 A-RVVIANRTYENLQRL  420 (420)
Q Consensus       405 ~-~i~v~nR~~~ka~~L  420 (420)
                      + +|+|+||+.+|+++|
T Consensus       151 ~~~v~i~~R~~~~a~~l  167 (283)
T 3jyo_A          151 VQKLQVADLDTSRAQAL  167 (283)
T ss_dssp             CSEEEEECSSHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHH
Confidence            9 899999999998753

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=100.00  E-value=1.4e-44  Score=350.24  Aligned_cols=154  Identities=25%  Similarity=0.340  Sum_probs=144.2

Q ss_pred             eEEeeeccCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHHHH
Q 014691          254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS  331 (420)
Q Consensus       254 ~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~  331 (420)
                      .+|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|+|+|||||||+++++++|++|+.|+.
T Consensus         3 ~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~~A~~   82 (272)
T 3pwz_A            3 DRYAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGKGMNITAPFKLRAFELADRRSERAQL   82 (272)
T ss_dssp             EEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             cEEEEECCCcCCcccHHHHHHHHHHcCCCcEEEEEEcCHHHHHHHHHHHhhCCCCEEEECchhHHHHHHHHhhCCHHHHH
Confidence            4899999999999999999999999999999999988  58999999998899999999999999999999999999999


Q ss_pred             hcceeEEEEeccCCeEEEEecCHHHHHHH-HHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-eEEE
Q 014691          332 IGAVNCIIRRQSDGKLFGYNTDYVGAISA-IEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVI  409 (420)
Q Consensus       332 iGAvNTi~~~~~~g~l~G~NTD~~G~~~~-l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v  409 (420)
                      +||||||+++  +|+|+||||||.||+++ |++.           +.++++|+++|+|+||+||+++++|.+.|+ +|+|
T Consensus        83 iGAvNTv~~~--~g~l~G~NTD~~G~~~~lL~~~-----------~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i  149 (272)
T 3pwz_A           83 ARAANALKFE--DGRIVAENFDGIGLLRDIEENL-----------GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVI  149 (272)
T ss_dssp             HTCCSEEEEE--TTEEEEECCHHHHHHHHHHTTS-----------CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEE
T ss_pred             hCccceEEcc--CCeEEEecCCHHHHHHHHHHHc-----------CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEE
Confidence            9999999877  89999999999999999 7432           246789999999999999999999999998 9999


Q ss_pred             EeCChhhhhcC
Q 014691          410 ANRTYENLQRL  420 (420)
Q Consensus       410 ~nR~~~ka~~L  420 (420)
                      +|||.+|+++|
T Consensus       150 ~~R~~~~a~~l  160 (272)
T 3pwz_A          150 ANRDMAKALAL  160 (272)
T ss_dssp             ECSCHHHHHHH
T ss_pred             EeCCHHHHHHH
Confidence            99999998753

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=100.00  E-value=7.3e-45  Score=352.95  Aligned_cols=153  Identities=31%  Similarity=0.585  Sum_probs=144.9

Q ss_pred             EEeeeccCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHHHHh
Q 014691          255 VFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSI  332 (420)
Q Consensus       255 ~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~i  332 (420)
                      .|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|.|+|||||||++|++++|++|+.|+.+
T Consensus         2 ~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~~A~~i   81 (277)
T 3don_A            2 KFAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIPHKERIIPYLDDINEQAKSV   81 (277)
T ss_dssp             EEEEEESSCTTCCHHHHHHHHHHHTTCCCEEEEEECCGGGGGGHHHHHHHTTCSEEEECTTCTTTTGGGCSEECHHHHHH
T ss_pred             EEEEECCCccccccHHHHHHHHHHcCcCcEEEEEEcCHHHHHHHHHHHhhCCCCEEEECcCCHHHHHHHhhhCCHHHHHh
Confidence            599999999999999999999999999999999998  489999999998999999999999999999999999999999


Q ss_pred             cceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEe
Q 014691          333 GAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIAN  411 (420)
Q Consensus       333 GAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~n  411 (420)
                      ||||||+++  +|+|+||||||.||+++|++..           .++++|+++|+|+||+||+++++|.+.|+ +|+|+|
T Consensus        82 GAVNTv~~~--~g~l~G~NTD~~G~~~~L~~~~-----------~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~  148 (277)
T 3don_A           82 GAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIY-----------EGIEDAYILILGAGGASKGIANELYKIVRPTLTVAN  148 (277)
T ss_dssp             TCCCEEEEE--TTEEEEECCHHHHHHHHHHHHS-----------TTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEEC
T ss_pred             CceeEEEec--CCEEEEECChHHHHHHHHHHhC-----------CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            999999997  8999999999999999997642           45789999999999999999999999999 999999


Q ss_pred             CChhhhhcC
Q 014691          412 RTYENLQRL  420 (420)
Q Consensus       412 R~~~ka~~L  420 (420)
                      |+.+|+++|
T Consensus       149 R~~~~a~~l  157 (277)
T 3don_A          149 RTMSRFNNW  157 (277)
T ss_dssp             SCGGGGTTC
T ss_pred             CCHHHHHHH
Confidence            999999864

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=100.00  E-value=1.4e-44  Score=356.61  Aligned_cols=159  Identities=31%  Similarity=0.568  Sum_probs=150.0

Q ss_pred             ccCCCceEEeeeccCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcc
Q 014691          248 QMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEV  325 (420)
Q Consensus       248 ~~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l  325 (420)
                      .++.+|++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|.|+|||||||+++++++|++
T Consensus        32 ~i~~~t~~~gviG~Pi~hS~SP~ihn~~f~~~Gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~l  111 (315)
T 3tnl_A           32 RITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKL  111 (315)
T ss_dssp             CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCCEEEEEEECCHHHHHHHHHHHHHTTCCEEEECTTSTTTGGGGCSEE
T ss_pred             hcCCcccEEEEECCCccccccHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHhc
Confidence            4778899999999999999999999999999999999999988  48999999999899999999999999999999999


Q ss_pred             cHHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC
Q 014691          326 DTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA  405 (420)
Q Consensus       326 ~~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~  405 (420)
                      |+.|+.+||||||+++  +|+|+||||||.||+++|++.           +.+++||+++|+|+||+||+++++|...|+
T Consensus       112 s~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-----------~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga  178 (315)
T 3tnl_A          112 SPAAELVGAVNTVVND--DGVLTGHITDGTGYMRALKEA-----------GHDIIGKKMTICGAGGAATAICIQAALDGV  178 (315)
T ss_dssp             CHHHHHHTCCSEEEEE--TTEEEEECCHHHHHHHHHHHT-----------TCCCTTSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CHHHHHhCccceEEec--CCEEEEeCCCHHHHHHHHHHc-----------CCCccCCEEEEECCChHHHHHHHHHHHCCC
Confidence            9999999999999987  899999999999999999763           156789999999999999999999999999


Q ss_pred             -eEEEEeCC---hhhhhc
Q 014691          406 -RVVIANRT---YENLQR  419 (420)
Q Consensus       406 -~i~v~nR~---~~ka~~  419 (420)
                       +|+|+||+   .+||++
T Consensus       179 ~~V~i~nR~~~~~~~a~~  196 (315)
T 3tnl_A          179 KEISIFNRKDDFYANAEK  196 (315)
T ss_dssp             SEEEEEECSSTTHHHHHH
T ss_pred             CEEEEEECCCchHHHHHH
Confidence             99999999   888875

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=100.00  E-value=2.3e-45  Score=354.38  Aligned_cols=152  Identities=33%  Similarity=0.575  Sum_probs=143.1

Q ss_pred             CceEEeeeccCccccccHHHHHHHH----HHcCCCceeeccccccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccH
Q 014691          252 DTKVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDT  327 (420)
Q Consensus       252 ~~~~~~v~G~pv~hS~SP~ihn~~f----~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~  327 (420)
                      +|++|||||+||+||+||.|||++|    +++|+|+.|.++++++++++++.++.++|.|+|||||||+++++++|++|+
T Consensus         2 k~~~~~viG~Pi~hS~SP~~hn~~f~~~~~~~gl~~~Y~~~~v~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~   81 (269)
T 3phh_A            2 KLKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVCDKIKG   81 (269)
T ss_dssp             CEEEEEEEESSCTTCCHHHHHHHHHHHHHHHHSSEEEEEEEECCSSSCHHHHHHHTTEEEEEECTTCHHHHHHHSSEECG
T ss_pred             CceEEEEECCCccccccHHHHHHHHHHHHHHcCCCCEEeeEEhhhHHHHHHHHhhCCCCEEEEccccHHHHHHHHhhcCH
Confidence            4789999999999999999999999    999999999999999999999999889999999999999999999999999


Q ss_pred             HHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeE
Q 014691          328 VAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARV  407 (420)
Q Consensus       328 ~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i  407 (420)
                      .|+.+||||||+++  +|+|+||||||.||+.+|++.            .   +|+++|||+||+||+++++|.+.|.+|
T Consensus        82 ~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~------------~---~k~vlvlGaGGaaraia~~L~~~G~~v  144 (269)
T 3phh_A           82 IALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQK------------N---YQNALILGAGGSAKALACELKKQGLQV  144 (269)
T ss_dssp             GGGGTTCCCEEEEE--TTEEEEECCHHHHHHHHCC------------------CCEEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred             HHHHhCceeEEEee--CCEEEEecChHHHHHHHHHHc------------C---CCEEEEECCCHHHHHHHHHHHHCCCEE
Confidence            99999999999997  899999999999999997431            1   789999999999999999999999999


Q ss_pred             EEEeCChhhhhcC
Q 014691          408 VIANRTYENLQRL  420 (420)
Q Consensus       408 ~v~nR~~~ka~~L  420 (420)
                      +|+|||.+|+++|
T Consensus       145 ~V~nRt~~ka~~l  157 (269)
T 3phh_A          145 SVLNRSSRGLDFF  157 (269)
T ss_dssp             EEECSSCTTHHHH
T ss_pred             EEEeCCHHHHHHH
Confidence            9999999998763

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=3.6e-43  Score=340.33  Aligned_cols=156  Identities=26%  Similarity=0.425  Sum_probs=145.7

Q ss_pred             cCCCceE-EeeeccCccccccHHHHHHHHHHcCCCceeeccccccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccH
Q 014691          249 MGPDTKV-FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDT  327 (420)
Q Consensus       249 ~~~~~~~-~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~  327 (420)
                      ++++|++ |||||+|  ||+||.|||++|+++|+|+.|.+++.++++++++.++..+|.|+|||||||++|++++|++++
T Consensus         2 i~~~t~~~~~viG~P--hS~SP~~hn~~~~~~gl~~~Y~~~~~~~l~~~~~~~~~~~~~G~nVTiP~K~~i~~~~d~~~~   79 (271)
T 1npy_A            2 INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIHP   79 (271)
T ss_dssp             CCTTCEEEEEECSSC--CSHHHHHHHHHHHHHTCCEEEEEECCSCHHHHHHHHHHHTCCEEEECTTCTTTTGGGCSEECH
T ss_pred             cCCCceEEEEEECCC--CcccHHHHHHHHHHcCCCcEEEeechhhHHHHHHHhccCCCCeEEECcCCHHHHHHHHHHhhH
Confidence            5678999 9999999  999999999999999999999999988999999999888999999999999999999999999


Q ss_pred             HHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-e
Q 014691          328 VAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-R  406 (420)
Q Consensus       328 ~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~  406 (420)
                      .|+.+||||||+++  +|+|+||||||.||..+|++..           .. .+++++|||+||+||+++++|.+.|+ +
T Consensus        80 ~A~~iGAvNTi~~~--~g~l~g~NTD~~G~~~~l~~~~-----------~~-~~~~vlvlGaGgaarav~~~L~~~G~~~  145 (271)
T 1npy_A           80 SAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKYH-----------LN-KNAKVIVHGSGGMAKAVVAAFKNSGFEK  145 (271)
T ss_dssp             HHHTTTCCCEEEEE--TTEEEEECHHHHHHHHHHHHTT-----------CC-TTSCEEEECSSTTHHHHHHHHHHTTCCC
T ss_pred             HHHHhCCCCceECc--CCEEEeecCCHHHHHHHHHHhC-----------CC-CCCEEEEECCcHHHHHHHHHHHHCCCCE
Confidence            99999999999987  8999999999999999997631           22 46899999999999999999999999 8


Q ss_pred             EEEEeCChhhhhcC
Q 014691          407 VVIANRTYENLQRL  420 (420)
Q Consensus       407 i~v~nR~~~ka~~L  420 (420)
                      |+|+|||.+||++|
T Consensus       146 i~v~nRt~~ka~~l  159 (271)
T 1npy_A          146 LKIYARNVKTGQYL  159 (271)
T ss_dssp             EEEECSCHHHHHHH
T ss_pred             EEEEeCCHHHHHHH
Confidence            99999999998754

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=100.00  E-value=2.2e-42  Score=335.05  Aligned_cols=155  Identities=26%  Similarity=0.404  Sum_probs=144.9

Q ss_pred             eEEeeeccCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHHHH
Q 014691          254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS  331 (420)
Q Consensus       254 ~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~  331 (420)
                      ++|||||+||+||+||.|||++|+++|+|+.|.++++  +++.++++.++.++|.|+|||||||+++++++|++|+.|+.
T Consensus         2 ~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~~~~~~l~~~i~~~~~~~~~G~nVT~P~K~~v~~~ld~~~~~A~~   81 (272)
T 1p77_A            2 DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITSPFKERAYQLADEYSQRAKL   81 (272)
T ss_dssp             EEEEEEESSCTTCCHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             cEEEEECCCcccccCHHHHHHHHHHCCcCeEEEEEEcCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHHhhcCHHHHH
Confidence            6899999999999999999999999999999999998  58999999999899999999999999999999999999999


Q ss_pred             hcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEe
Q 014691          332 IGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIAN  411 (420)
Q Consensus       332 iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~n  411 (420)
                      +||||||++. .+|+|+||||||.||+.+|++.           +.++++|+++|+|+||+||+++++|.+.|++|+|+|
T Consensus        82 igavNti~~~-~~g~l~g~NTD~~G~~~~L~~~-----------~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~  149 (272)
T 1p77_A           82 AEACNTLKKL-DDGKLYADNTDGIGLVTDLQRL-----------NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLAN  149 (272)
T ss_dssp             HTCCSEEEEC-TTSCEEEECCHHHHHHHHHHHT-----------TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEE
T ss_pred             hCCceEEEEc-cCCEEEEecCCHHHHHHHHHHh-----------CCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEE
Confidence            9999999984 2899999999999999999763           145788999999999999999999999999999999


Q ss_pred             CChhhhhcC
Q 014691          412 RTYENLQRL  420 (420)
Q Consensus       412 R~~~ka~~L  420 (420)
                      |+.+|+++|
T Consensus       150 R~~~~a~~l  158 (272)
T 1p77_A          150 RTFSKTKEL  158 (272)
T ss_dssp             SSHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            999988753

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=100.00  E-value=3e-42  Score=330.74  Aligned_cols=144  Identities=39%  Similarity=0.644  Sum_probs=135.1

Q ss_pred             EEeeeccCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHHHHh
Q 014691          255 VFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSI  332 (420)
Q Consensus       255 ~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~i  332 (420)
                      +|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++ ++|+|+|||||||+++++|+|+ |+.|+.+
T Consensus         2 ~~~viG~pi~hS~SP~~hn~~~~~~gl~~~Y~~~~v~~~~l~~~~~~~~-~~~~G~nVT~P~K~~v~~~~d~-~~~A~~i   79 (253)
T 3u62_A            2 KFCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRIL-EEYDGFNATIPHKERVMRYVEP-SEDAQRI   79 (253)
T ss_dssp             EEEEEESSCTTCSHHHHHHHHHHHHTCCCEEEEEECCGGGHHHHHHHHH-HHCSEEEECTTCTTGGGGGSEE-CHHHHHH
T ss_pred             EEEEECCCccccccHHHHHHHHHHcCCCCEEEeEecCHHHHHHHHHHHh-hCCCceeecCChHHHHHHHhCC-CHHHHHc
Confidence            699999999999999999999999999999999998  48999999999 9999999999999999999999 9999999


Q ss_pred             cceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEe
Q 014691          333 GAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIAN  411 (420)
Q Consensus       333 GAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~n  411 (420)
                      ||||||++   +   +||||||.||+++|++.             ++++ +++|||+||+||+++++|.+.|+ +|+|+|
T Consensus        80 GAvNTi~~---~---~G~NTD~~G~~~~l~~~-------------~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~n  139 (253)
T 3u62_A           80 KAVNCVFR---G---KGYNTDWVGVVKSLEGV-------------EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVN  139 (253)
T ss_dssp             TCCCEEET---T---EEECCHHHHHHHHTTTC-------------CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CcceEeec---C---EEEcchHHHHHHHHHhc-------------CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEe
Confidence            99999976   3   89999999999998542             3467 89999999999999999999999 999999


Q ss_pred             CChhhhhcC
Q 014691          412 RTYENLQRL  420 (420)
Q Consensus       412 R~~~ka~~L  420 (420)
                      ||.+|+++|
T Consensus       140 R~~~ka~~l  148 (253)
T 3u62_A          140 RTIERAKAL  148 (253)
T ss_dssp             SCHHHHHTC
T ss_pred             CCHHHHHHH
Confidence            999999875

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=3e-41  Score=326.85  Aligned_cols=154  Identities=31%  Similarity=0.470  Sum_probs=144.1

Q ss_pred             eEEeeeccCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHHHH
Q 014691          254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS  331 (420)
Q Consensus       254 ~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~  331 (420)
                      ++|||||+||+||+||.|||++|+++|+++.|.++++  ++|.++++.+++++|.|+|||||||+.+++++|++|+.|+.
T Consensus         2 ~~~~viG~pi~hS~Sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nVT~P~K~~~~~~ld~~~~~A~~   81 (271)
T 1nyt_A            2 ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAAL   81 (271)
T ss_dssp             CSEEEEESSCTTCSHHHHHHHHHHHHTCCCCEEEEECCTTCHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             CEEEEECCCcccccCHHHHHHHHHHCCCCcEEEEEEcCHHHHHHHHHHHHhCCCCeEEEccCCHHHHHHHHhhcCHHHHH
Confidence            5799999999999999999999999999999999998  58999999999899999999999999999999999999999


Q ss_pred             hcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEe
Q 014691          332 IGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIAN  411 (420)
Q Consensus       332 iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~n  411 (420)
                      +||||||++. .+|+|+||||||.||+.+|++..           .++++|+++|+|+||+|++++++|.+.|++|+|+|
T Consensus        82 igavNti~~~-~~g~l~G~ntD~~G~~~~L~~~~-----------~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~  149 (271)
T 1nyt_A           82 AGAVNTLMRL-EDGRLLGDNTDGVGLLSDLERLS-----------FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITN  149 (271)
T ss_dssp             HTCCSEEEEC-TTSCEEEECCHHHHHHHHHHHHT-----------CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             hCCceEEEEc-CCCeEEEeCCCHHHHHHHHHhcC-----------cCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEE
Confidence            9999999984 28999999999999999997631           45779999999999999999999999999999999


Q ss_pred             CChhhhhc
Q 014691          412 RTYENLQR  419 (420)
Q Consensus       412 R~~~ka~~  419 (420)
                      |+.+++++
T Consensus       150 R~~~~~~~  157 (271)
T 1nyt_A          150 RTVSRAEE  157 (271)
T ss_dssp             SSHHHHHH
T ss_pred             CCHHHHHH
Confidence            99988764

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=100.00  E-value=1e-40  Score=327.39  Aligned_cols=165  Identities=40%  Similarity=0.620  Sum_probs=148.6

Q ss_pred             HHhccccCCCceEEeeeccCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCEEEEcccchHHHHh
Q 014691          243 LYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVK  320 (420)
Q Consensus       243 ~~~~~~~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~  320 (420)
                      -|++.+++..|++|+|+|+|++||+||.|||++|+++|+|+.|.++++  +++.++++.++..++.|+|||||||++|++
T Consensus        13 ~~~~~~~~~~t~~~~viG~pi~hS~Sp~~hn~~~~~~Gl~~~Y~~~~~~~~~l~~~v~~l~~~~~~G~nVTiP~K~~i~~   92 (297)
T 2egg_A           13 GENLYFQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIAGVNVTIPHKLAVIP   92 (297)
T ss_dssp             -------CCCCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCTTCHHHHHHHHHHHTCCEEEECTTCTTTTGG
T ss_pred             cccceecCCceeEEEEECCCcccccCHHHHHHHHHHcCcCcEEEEEEcCHHHHHHHHHHHhhCCCCeEEECCcCHHHHHH
Confidence            478889999999999999999999999999999999999999999998  589999999988899999999999999999


Q ss_pred             hhhcccHHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHH
Q 014691          321 CCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGA  400 (420)
Q Consensus       321 ~~d~l~~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL  400 (420)
                      ++|++++.|+.+||||||+++  +|+|+|+||||.||..+|++..          ..++++++++|+|+||+|++++++|
T Consensus        93 ~ld~~~~~A~~iGavNti~~~--~g~l~g~nTd~~G~~~~l~~~~----------~~~l~~~~vlVlGaGg~g~aia~~L  160 (297)
T 2egg_A           93 FLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYVQALEEEM----------NITLDGKRILVIGAGGGARGIYFSL  160 (297)
T ss_dssp             GCSEECHHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHHT----------TCCCTTCEEEEECCSHHHHHHHHHH
T ss_pred             HHHHHhHHHHHhCCCCeEECc--CCeEeeccCCHHHHHHHHHHhC----------CCCCCCCEEEEECcHHHHHHHHHHH
Confidence            999999999999999999997  8999999999999999997641          0246789999999999999999999


Q ss_pred             HhCCC-eEEEEeCChhhhhc
Q 014691          401 KAKGA-RVVIANRTYENLQR  419 (420)
Q Consensus       401 ~~~g~-~i~v~nR~~~ka~~  419 (420)
                      .+.|+ +|+|+||+.+|+++
T Consensus       161 ~~~G~~~V~v~nR~~~ka~~  180 (297)
T 2egg_A          161 LSTAAERIDMANRTVEKAER  180 (297)
T ss_dssp             HTTTCSEEEEECSSHHHHHH
T ss_pred             HHCCCCEEEEEeCCHHHHHH
Confidence            99999 99999999998875

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=3.9e-39  Score=314.39  Aligned_cols=157  Identities=43%  Similarity=0.649  Sum_probs=147.2

Q ss_pred             cCCCceEEeeeccCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhccc
Q 014691          249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (420)
Q Consensus       249 ~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~  326 (420)
                      ++..|++|||+|+|++||+||.|||++|+++|+++.|.++++  +++.++++.++.++|.|+|||||||++|++++|+++
T Consensus         7 ~~~~~~~~~viG~pi~hS~Sp~~h~~~~~~~gi~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nVtiP~k~~i~~~~d~~~   86 (287)
T 1nvt_A            7 INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNVTIPHKIEIMKYLDEID   86 (287)
T ss_dssp             CCTTCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGGGGHHHHHHHHTCCEEEECTTSTTGGGGGCSEEC
T ss_pred             hcCCccEEEEECCCcccccCHHHHHHHHHHcCCCcEEEEEEcCHHHHHHHHHHHHhCCCCEEEEccCCHHHHHHHHHhcC
Confidence            667789999999999999999999999999999999999988  589999999988899999999999999999999999


Q ss_pred             HHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCe
Q 014691          327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGAR  406 (420)
Q Consensus       327 ~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~  406 (420)
                      +.|+.+|||||+++.  +|+|+|+|||+.||+.+|++..           .++++|+++|+|+||+|++++++|.+.| +
T Consensus        87 ~~a~~igavnt~~~~--~g~l~g~nTd~~G~~~~L~~~~-----------~~l~~k~vlV~GaGgiG~aia~~L~~~G-~  152 (287)
T 1nvt_A           87 KDAQLIGAVNTIKIE--DGKAIGYNTDGIGARMALEEEI-----------GRVKDKNIVIYGAGGAARAVAFELAKDN-N  152 (287)
T ss_dssp             HHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHHH-----------CCCCSCEEEEECCSHHHHHHHHHHTSSS-E
T ss_pred             HHHHHhCceeeEEee--CCEEEEecCCHHHHHHHHHHhC-----------CCcCCCEEEEECchHHHHHHHHHHHHCC-C
Confidence            999999999999987  8999999999999999997642           4578999999999999999999999999 9


Q ss_pred             EEEEeCChhhhhc
Q 014691          407 VVIANRTYENLQR  419 (420)
Q Consensus       407 i~v~nR~~~ka~~  419 (420)
                      |+++||+.+++++
T Consensus       153 V~v~~r~~~~~~~  165 (287)
T 1nvt_A          153 IIIANRTVEKAEA  165 (287)
T ss_dssp             EEEECSSHHHHHH
T ss_pred             EEEEECCHHHHHH
Confidence            9999999988764

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=100.00  E-value=6.3e-38  Score=304.12  Aligned_cols=160  Identities=34%  Similarity=0.634  Sum_probs=148.9

Q ss_pred             cccCCCceEEeeeccCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhc
Q 014691          247 RQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDE  324 (420)
Q Consensus       247 ~~~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~  324 (420)
                      .+++.+|++||++|+|++||+||.|||++|+++|+++.|.++++  +++.++++.++.++|.|+|||||||+++++++|+
T Consensus         6 ~~~~~~t~~~~liG~pi~hs~sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nvtiP~k~~i~~~ld~   85 (275)
T 2hk9_A            6 HMINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVKGINVTVPFKEEIIPLLDY   85 (275)
T ss_dssp             -CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCSEEEEEEECCGGGHHHHHHHHHHHTCCEEEECTTSTTTTGGGCSE
T ss_pred             ccccCCceEEEEECCCcccccCHHHHHHHHHHcCCCcEEEEEECCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHHHH
Confidence            36788899999999999999999999999999999999999987  5899999999888999999999999999999999


Q ss_pred             ccHHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCC
Q 014691          325 VDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKG  404 (420)
Q Consensus       325 l~~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g  404 (420)
                      +++.|+.+||||||+++  +|+++|+|||+.||+.+|++..           .++++++++|||+|++|++++++|.+.|
T Consensus        86 l~~~A~~~gavnti~~~--~g~~~g~nTd~~G~~~~l~~~~-----------~~~~~~~v~iiGaG~~g~aia~~L~~~g  152 (275)
T 2hk9_A           86 VEDTAKEIGAVNTVKFE--NGKAYGYNTDWIGFLKSLKSLI-----------PEVKEKSILVLGAGGASRAVIYALVKEG  152 (275)
T ss_dssp             ECHHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHHC-----------TTGGGSEEEEECCSHHHHHHHHHHHHHT
T ss_pred             hhHHHHHhCCcceEEee--CCEEEeecCCHHHHHHHHHHhC-----------CCcCCCEEEEECchHHHHHHHHHHHHcC
Confidence            99999999999999987  8999999999999999997641           3567899999999999999999999999


Q ss_pred             CeEEEEeCChhhhhc
Q 014691          405 ARVVIANRTYENLQR  419 (420)
Q Consensus       405 ~~i~v~nR~~~ka~~  419 (420)
                      ++|+++||+.+++++
T Consensus       153 ~~V~v~~r~~~~~~~  167 (275)
T 2hk9_A          153 AKVFLWNRTKEKAIK  167 (275)
T ss_dssp             CEEEEECSSHHHHHH
T ss_pred             CEEEEEECCHHHHHH
Confidence            999999999988764

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=100.00  E-value=2.7e-34  Score=276.53  Aligned_cols=152  Identities=36%  Similarity=0.567  Sum_probs=140.8

Q ss_pred             ceEEeeeccCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHHH
Q 014691          253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAK  330 (420)
Q Consensus       253 ~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~  330 (420)
                      +++|||+|+|++||+||.|||++|+++|+++.|.++++  +++.++++.++.. +.|+|||+|||+++++++|++++.|+
T Consensus         1 ~~~~~~~G~pi~hs~sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~-~~G~~vt~P~k~~i~~~~~~l~~~a~   79 (263)
T 2d5c_A            1 MLRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRA-FRGVNLTLPLKEAALAHLDWVSPEAQ   79 (263)
T ss_dssp             CEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGHHHHHHHHHHH-CSEEEECTTCTTGGGGGCSEECHHHH
T ss_pred             CeEEEEECCCcccccCHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHhcccc-CceEEEcccCHHHHHHHHHHHhHHHH
Confidence            36899999999999999999999999999999999977  5799999998776 99999999999999999999999999


Q ss_pred             HhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEE
Q 014691          331 SIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIA  410 (420)
Q Consensus       331 ~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~  410 (420)
                      .+|++||++++  +|++.|+|||+.||+.+|++..           .+++| +++|||+|++|++++++|.+.|++|+++
T Consensus        80 ~~gavn~i~~~--~g~~~g~ntd~~g~~~~l~~~~-----------~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~  145 (263)
T 2d5c_A           80 RIGAVNTVLQV--EGRLFGFNTDAPGFLEALKAGG-----------IPLKG-PALVLGAGGAGRAVAFALREAGLEVWVW  145 (263)
T ss_dssp             HHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHTT-----------CCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             HhCCCCcEEcc--CCeEEEeCCCHHHHHHHHHHhC-----------CCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEE
Confidence            99999999986  8999999999999999997641           45778 9999999999999999999999999999


Q ss_pred             eCChhhhhc
Q 014691          411 NRTYENLQR  419 (420)
Q Consensus       411 nR~~~ka~~  419 (420)
                      ||+.+++++
T Consensus       146 ~r~~~~~~~  154 (263)
T 2d5c_A          146 NRTPQRALA  154 (263)
T ss_dssp             CSSHHHHHH
T ss_pred             ECCHHHHHH
Confidence            999988764

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.91  E-value=6.6e-26  Score=220.56  Aligned_cols=145  Identities=18%  Similarity=0.145  Sum_probs=124.5

Q ss_pred             cCccccccHHHHHHHHH-----HcCCCceeecccc--ccHHHHHHHh-cCCCCCEEEEcccchH-HHHhhhhcccHHHHH
Q 014691          261 KPVGHSKSPILYNEAFK-----SVGFNGVFVHLLV--DDIAKFFQTY-SSNDFAGFSCTIPHKE-AAVKCCDEVDTVAKS  331 (420)
Q Consensus       261 ~pv~hS~SP~ihn~~f~-----~~gl~~~y~~~~~--~~l~~~~~~~-~~~~~~G~~VT~P~K~-~i~~~~d~l~~~A~~  331 (420)
                      .||.||+||.|||.+|+     .+|+++.|.++++  +++.++++.+ ...+..|+|||.|||. ..+..++++.+.++.
T Consensus         2 ~~i~hs~sp~~h~~~~~~~~~~~~g~~~~y~~~~v~~~~~~~~~~~~~~~~~~~g~~~t~~~~~G~~~~~~~~~~~~~~~   81 (287)
T 1lu9_A            2 KKLLFQFDTDATPSVFDVVVGYDGGADHITGYGNVTPDNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEAVKK   81 (287)
T ss_dssp             CCEEEEEESSSSCCHHHHHHHHHTTCSEEEEESSCCTTTHHHHHHHHHSSCCGGGGGGEEEEEECSCHHHHHHHHHHHHH
T ss_pred             CceEEEccCCCCCCchhhheeeccCcceEeccCCcCHHHHHhhhcceEEecCccccccceEEEccchHHHHHHHHHHHHH
Confidence            69999999999999999     5999999999988  5899999985 6778999999999976 445566666666665


Q ss_pred             --hcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEc-cchHHHHHHHHHHhCCCeEE
Q 014691          332 --IGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIG-AGGAGKALAYGAKAKGARVV  408 (420)
Q Consensus       332 --iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviG-aGGaara~~~aL~~~g~~i~  408 (420)
                        +||+||++..  +  +.|+|||+.||+.+|++.+.          .+++||+++|+| +||+|++++++|.+.|++|+
T Consensus        82 ~~~gavnt~~~~--~--~~G~nTd~~g~~~~l~~~~~----------~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~  147 (287)
T 1lu9_A           82 RFFGPFRVSCML--D--SNGSNTTAAAGVALVVKAAG----------GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVV  147 (287)
T ss_dssp             HCBTTBCCEEEE--C--STTHHHHHHHHHHHHHHHTT----------SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEE
T ss_pred             hcCCCeEEEEec--C--CCcCCchHHHHHHHHHHhhc----------cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEE
Confidence              4999999876  5  46999999999999976411          346789999999 89999999999999999999


Q ss_pred             EEeCChhhhhc
Q 014691          409 IANRTYENLQR  419 (420)
Q Consensus       409 v~nR~~~ka~~  419 (420)
                      +++|+.+++++
T Consensus       148 i~~R~~~~~~~  158 (287)
T 1lu9_A          148 LCGRKLDKAQA  158 (287)
T ss_dssp             EEESSHHHHHH
T ss_pred             EEECCHHHHHH
Confidence            99999888764

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=99.90  E-value=4.3e-25  Score=225.68  Aligned_cols=140  Identities=16%  Similarity=0.253  Sum_probs=122.7

Q ss_pred             ccCCCceEEe--eeccCccccccHHHHHHH--HHHc-CCCceeeccccc---cHHHHHHHhcCCCCCEEEE---cccchH
Q 014691          248 QMGPDTKVFG--IIGKPVGHSKSPILYNEA--FKSV-GFNGVFVHLLVD---DIAKFFQTYSSNDFAGFSC---TIPHKE  316 (420)
Q Consensus       248 ~~~~~~~~~~--v~G~pv~hS~SP~ihn~~--f~~~-gl~~~y~~~~~~---~l~~~~~~~~~~~~~G~~V---T~P~K~  316 (420)
                      -++..++++|  ++|.   ||.||.|||++  |+++ |+|+.|.+++++   +|.++++.++ ++|.|+||   |+|||+
T Consensus        68 vvtdgt~ilGlG~iG~---hS~sPvmh~ka~lf~~~gGid~~yi~ldv~d~de~~~~v~~l~-~~f~GinvED~T~P~k~  143 (439)
T 2dvm_A           68 VVSDGSRILGLGNIGP---LAGLPVMEGKALLFKRFGGVDAFPIMIKEQEPNKFIDIVKAIA-PTFGGINLEDIASPKCF  143 (439)
T ss_dssp             EEECSTTBTTTBCCCH---HHHHHHHHHHHHHHHHHHCCEEEEEECSCCSHHHHHHHHHHTG-GGCSEEEECSCCTTHHH
T ss_pred             EEECCCeEecccceec---cccCHHHHHHHHHHHHhCCCCCeeeeeecCCHHHHHHHHHHhC-ccCcEEEEEeCCCchHH
Confidence            3455677877  8998   99999999966  9999 899999999993   5666666666 89999999   999999


Q ss_pred             HHHhhhhcccHHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHH
Q 014691          317 AAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKAL  396 (420)
Q Consensus       317 ~i~~~~d~l~~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~  396 (420)
                      .+++++|+         ||||+++.. |++++| |||+.||+++|+..-           .++++++++|+||||+|+++
T Consensus       144 ~il~~l~~---------avNt~vf~d-D~~gtg-ntd~aG~~~AL~~~g-----------~~l~~~rvlvlGAGgAg~ai  201 (439)
T 2dvm_A          144 YILERLRE---------ELDIPVFHD-DQQGTA-AVVLAGLLNALKVVG-----------KKISEITLALFGAGAAGFAT  201 (439)
T ss_dssp             HHHHHHHH---------HCSSCEEEH-HHHHHH-HHHHHHHHHHHHHHT-----------CCTTTCCEEEECCSHHHHHH
T ss_pred             HHHHHHHH---------hcCEEEEeC-CCcEEe-ehHHHHHHHHHHHhC-----------CCccCCEEEEECccHHHHHH
Confidence            99999986         999999863 778999 999999999997641           45778999999999999999


Q ss_pred             HHHHHhCCC---eEEEEe----CC
Q 014691          397 AYGAKAKGA---RVVIAN----RT  413 (420)
Q Consensus       397 ~~aL~~~g~---~i~v~n----R~  413 (420)
                      ++.|.+.|+   +|+|+|    |+
T Consensus       202 a~~L~~~G~~~~~I~vvd~~~~R~  225 (439)
T 2dvm_A          202 LRILTEAGVKPENVRVVELVNGKP  225 (439)
T ss_dssp             HHHHHHTTCCGGGEEEEEEETTEE
T ss_pred             HHHHHHcCCCcCeEEEEEccCCCc
Confidence            999999998   799999    98

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=99.51  E-value=4.5e-16  Score=156.15  Aligned_cols=132  Identities=18%  Similarity=0.207  Sum_probs=108.8

Q ss_pred             cCccccccHHHHHHHHHHcCC-CceeeccccccHHHHHHHhcCCCCCEEEE-cccchHHHHhhhhcccHHHHHh----cc
Q 014691          261 KPVGHSKSPILYNEAFKSVGF-NGVFVHLLVDDIAKFFQTYSSNDFAGFSC-TIPHKEAAVKCCDEVDTVAKSI----GA  334 (420)
Q Consensus       261 ~pv~hS~SP~ihn~~f~~~gl-~~~y~~~~~~~l~~~~~~~~~~~~~G~~V-T~P~K~~i~~~~d~l~~~A~~i----GA  334 (420)
                      +.|-+++||.+||..|...|+ .+.|..+.++.  ++++.++..++.|+|+ |+|||..+++++|.+++.|..+    ||
T Consensus        68 d~i~~vksP~~~~~~~~~~g~~~~~y~~~~~~~--~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA  145 (361)
T 1pjc_A           68 EMVVKVKEPLPAEYDLMQKDQLLFTYLHLAAAR--ELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGA  145 (361)
T ss_dssp             SEEECSSCCCGGGGGGCCTTCEEEECCCGGGCH--HHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCHHHHHhhcCCCEEEEEeccccCH--HHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHH
Confidence            344478999999999999997 88999888752  4566666779999998 9999999999999999999999    99


Q ss_pred             eeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          335 VNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       335 vNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      +||+...  +|+  |+..      .    .+           ..+++++|+|+|+||+|++++..+..+|++|+++||+.
T Consensus       146 ~nt~~~~--~g~--G~~l------~----~l-----------~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          146 RFLERQQ--GGR--GVLL------G----GV-----------PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             HHTSGGG--TSC--CCCT------T----CB-----------TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             HHHhhcc--CCC--ceec------c----CC-----------CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            9999765  564  3321      1    11           12456899999999999999999999999999999999


Q ss_pred             hhhhc
Q 014691          415 ENLQR  419 (420)
Q Consensus       415 ~ka~~  419 (420)
                      +|++.
T Consensus       201 ~r~~~  205 (361)
T 1pjc_A          201 ERLSY  205 (361)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88754

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.70  E-value=6.2e-09  Score=100.25  Aligned_cols=143  Identities=14%  Similarity=0.151  Sum_probs=107.7

Q ss_pred             Eeeecc-CccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccch-----HHHHhhhhc
Q 014691          256 FGIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHK-----EAAVKCCDE  324 (420)
Q Consensus       256 ~~v~G~-pv~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K-----~~i~~~~d~  324 (420)
                      .-++|+ |-+++.- ..-...++++|++..+..++.    ++|.+.++.+ .++++.|+.|.+|+.     +.++..++.
T Consensus        39 vilvg~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p  117 (285)
T 3l07_A           39 AIIVGNDPASKTYV-ASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKP  117 (285)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCG
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCc
Confidence            345564 4444333 333557899999999888753    3677777777 467899999999997     667777765


Q ss_pred             ccHHHHHhcceeEEEEeccCCe-EEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHh
Q 014691          325 VDTVAKSIGAVNCIIRRQSDGK-LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKA  402 (420)
Q Consensus       325 l~~~A~~iGAvNTi~~~~~~g~-l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~  402 (420)
                       +..+.-+..+|+-...  .|. -...+++..|++..|++..           .+++||+++|||+|+ +|+.++..|..
T Consensus       118 -~KDVDG~~~~N~G~l~--~g~~~~~~PcTp~gv~~lL~~~~-----------i~l~Gk~vvVIG~s~iVG~p~A~lL~~  183 (285)
T 3l07_A          118 -EKDVDGFHPTNVGRLQ--LRDKKCLESCTPKGIMTMLREYG-----------IKTEGAYAVVVGASNVVGKPVSQLLLN  183 (285)
T ss_dssp             -GGBTTCCSHHHHHHHH--HTCTTCCCCHHHHHHHHHHHHTT-----------CCCTTCEEEEECCCTTTHHHHHHHHHH
T ss_pred             -ccccccCChhheeehh--cCCCCCCCCCCHHHHHHHHHHhC-----------CCCCCCEEEEECCCchhHHHHHHHHHH
Confidence             5566667777766432  222 3467899999999987752           578999999999999 79999999999


Q ss_pred             CCCeEEEEeCC
Q 014691          403 KGARVVIANRT  413 (420)
Q Consensus       403 ~g~~i~v~nR~  413 (420)
                      .|+.|++++|+
T Consensus       184 ~gAtVtv~hs~  194 (285)
T 3l07_A          184 AKATVTTCHRF  194 (285)
T ss_dssp             TTCEEEEECTT
T ss_pred             CCCeEEEEeCC
Confidence            99999999974

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.67  E-value=1e-08  Score=98.76  Aligned_cols=144  Identities=17%  Similarity=0.235  Sum_probs=105.5

Q ss_pred             Eeeecc-CccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccch-----HHHHhhhhc
Q 014691          256 FGIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHK-----EAAVKCCDE  324 (420)
Q Consensus       256 ~~v~G~-pv~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K-----~~i~~~~d~  324 (420)
                      .-++|+ |-+++.- ..-...++++|++..+..++.    ++|.+.++.+ .++++.|+.|++|++     ..++..++-
T Consensus        38 vilvg~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p  116 (285)
T 3p2o_A           38 VILVGDNPASQTYV-KSKAKACEECGIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIIS  116 (285)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCG
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCc
Confidence            345564 4444333 233457899999999888763    3677777777 467899999999998     566666654


Q ss_pred             ccHHHHHhcceeEEEEeccCCeEEE-EecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHh
Q 014691          325 VDTVAKSIGAVNCIIRRQSDGKLFG-YNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKA  402 (420)
Q Consensus       325 l~~~A~~iGAvNTi~~~~~~g~l~G-~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~  402 (420)
                       +..+.-+..+|+-...  .|...| .+++..|++..|++..           .+++||+++|+|+|+ +|+.++..|..
T Consensus       117 -~KDVDg~~~~N~g~l~--~g~~~g~~PcTp~gv~~lL~~~~-----------i~l~Gk~vvVvGrs~iVG~p~A~lL~~  182 (285)
T 3p2o_A          117 -SKDVDGFHPINVGYLN--LGLESGFLPCTPLGVMKLLKAYE-----------IDLEGKDAVIIGASNIVGRPMATMLLN  182 (285)
T ss_dssp             -GGCTTCCSHHHHHHHH--TTCCSSCCCHHHHHHHHHHHHTT-----------CCCTTCEEEEECCCTTTHHHHHHHHHH
T ss_pred             -ccccccCCHhhhhhhh--cCCCCCCCCCCHHHHHHHHHHhC-----------CCCCCCEEEEECCCchHHHHHHHHHHH
Confidence             4445556667754322  233233 7889999999987752           578999999999999 79999999999


Q ss_pred             CCCeEEEEeCCh
Q 014691          403 KGARVVIANRTY  414 (420)
Q Consensus       403 ~g~~i~v~nR~~  414 (420)
                      .|+.|++++|+.
T Consensus       183 ~gAtVtv~h~~t  194 (285)
T 3p2o_A          183 AGATVSVCHIKT  194 (285)
T ss_dssp             TTCEEEEECTTC
T ss_pred             CCCeEEEEeCCc
Confidence            999999999853

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.60  E-value=2e-08  Score=96.65  Aligned_cols=142  Identities=17%  Similarity=0.211  Sum_probs=105.5

Q ss_pred             Eeeec-cCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchH-----HHHhhhhc
Q 014691          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKE-----AAVKCCDE  324 (420)
Q Consensus       256 ~~v~G-~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~-----~i~~~~d~  324 (420)
                      .-++| +|-+++.- ..-...++++|++..+..++.    ++|.+.++.+ .++++.|+.|.+|++.     .++..++-
T Consensus        40 vilvg~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p  118 (286)
T 4a5o_A           40 VILVGTDPASQVYV-AHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHP  118 (286)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCG
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCc
Confidence            44556 44444433 233457899999998888743    3677777777 4668999999999987     66666654


Q ss_pred             ccHHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhC
Q 014691          325 VDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAK  403 (420)
Q Consensus       325 l~~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~  403 (420)
                       +..+.-+..+|+-...  .|.....+++..|++..|++.           +.+++||+++|+|+|+ +|+.++..|...
T Consensus       119 -~KDVDG~~~~N~g~l~--~g~~~~~PcTp~gv~~lL~~~-----------~i~l~Gk~vvVvGrs~iVG~plA~lL~~~  184 (286)
T 4a5o_A          119 -DKDVDGFHPYNIGRLA--QRMPLLRPCTPKGIMTLLAST-----------GADLYGMDAVVVGASNIVGRPMALELLLG  184 (286)
T ss_dssp             -GGCTTCCSHHHHHHHH--TTCCSSCCHHHHHHHHHHHHT-----------TCCCTTCEEEEECTTSTTHHHHHHHHHHT
T ss_pred             -ccccccCChhhhHHHh--cCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCchhHHHHHHHHHHC
Confidence             4455666777764332  233345788999999998765           2578999999999998 899999999999


Q ss_pred             CCeEEEEeC
Q 014691          404 GARVVIANR  412 (420)
Q Consensus       404 g~~i~v~nR  412 (420)
                      |+.|++++|
T Consensus       185 gAtVtv~hs  193 (286)
T 4a5o_A          185 GCTVTVTHR  193 (286)
T ss_dssp             TCEEEEECT
T ss_pred             CCeEEEEeC
Confidence            999999987

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.55  E-value=4.6e-08  Score=94.85  Aligned_cols=144  Identities=19%  Similarity=0.170  Sum_probs=105.8

Q ss_pred             EEeeec-cCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccch-----HHHHhhhh
Q 014691          255 VFGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHK-----EAAVKCCD  323 (420)
Q Consensus       255 ~~~v~G-~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K-----~~i~~~~d  323 (420)
                      ..-++| +|-+++.-- .-..+++++|++..+..++-    ++|.+.++.+ .++++.|+.|.+|++     +.++..++
T Consensus        41 avilvg~dpaS~~Yv~-~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~  119 (300)
T 4a26_A           41 ASIIVGQRMDSKKYVQ-LKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIH  119 (300)
T ss_dssp             EEEEESCCHHHHHHHH-HHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSC
T ss_pred             EEEEeCCCHHHHHHHH-HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCC
Confidence            344556 444444332 33457899999998887743    3677777777 467899999999998     66777666


Q ss_pred             cccHHHHHhcceeEEEEeccCC-eEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHH
Q 014691          324 EVDTVAKSIGAVNCIIRRQSDG-KLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAK  401 (420)
Q Consensus       324 ~l~~~A~~iGAvNTi~~~~~~g-~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~  401 (420)
                      - +..+.-+..+|+-.... .+ .-.-.+++..|++..|++..           .+++||+++|||+|+ +|+.++..|.
T Consensus       120 p-~KDVDG~~~~N~G~l~~-g~~~~~~~PcTp~gv~~lL~~~~-----------i~l~Gk~vvVIG~s~iVG~p~A~lL~  186 (300)
T 4a26_A          120 P-HKDADALLPVNVGLLHY-KGREPPFTPCTAKGVIVLLKRCG-----------IEMAGKRAVVLGRSNIVGAPVAALLM  186 (300)
T ss_dssp             G-GGCTTCCSHHHHHHHHC-TTCCCSCCCHHHHHHHHHHHHHT-----------CCCTTCEEEEECCCTTTHHHHHHHHH
T ss_pred             c-ccccccCCcceEEEeec-CCCcCCCCCCCHHHHHHHHHHcC-----------CCCCCCEEEEECCCchHHHHHHHHHH
Confidence            5 45566667777654321 11 11126788999999988752           578999999999999 8999999999


Q ss_pred             hCCCeEEEEeC
Q 014691          402 AKGARVVIANR  412 (420)
Q Consensus       402 ~~g~~i~v~nR  412 (420)
                      ..|+.|++++|
T Consensus       187 ~~gAtVtv~~~  197 (300)
T 4a26_A          187 KENATVTIVHS  197 (300)
T ss_dssp             HTTCEEEEECT
T ss_pred             HCCCeEEEEeC
Confidence            99999999998

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=97.81  E-value=7e-06  Score=86.49  Aligned_cols=64  Identities=17%  Similarity=0.209  Sum_probs=51.6

Q ss_pred             CCeEEEEecCHHHHHHHHHh---------------hhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-eE
Q 014691          344 DGKLFGYNTDYVGAISAIED---------------GLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RV  407 (420)
Q Consensus       344 ~g~l~G~NTD~~G~~~~l~~---------------~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~i  407 (420)
                      +|++.|+|||+.|++..++-               .+++.      ....+++++|+|+|+||.|.+++..|+..|+ +|
T Consensus       281 ~Gkl~g~~tD~~g~l~~~~la~~~~~lnL~lmrwrll~~~------gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~I  354 (598)
T 3vh1_A          281 QGKLAPRVVDLSSLLDPLKIADQSVDLNLKLMKWRILPDL------NLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKI  354 (598)
T ss_dssp             TSSSSCEEEECHHHHCHHHHHHHHHHHHHHHHHHHHCTTC------CHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEE
T ss_pred             CCCCcceeecchhccCHHHHHHHHHhhhhhhhhhhccchh------hHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEE
Confidence            79999999999999988751               01110      0134678999999999999999999999999 99


Q ss_pred             EEEeCC
Q 014691          408 VIANRT  413 (420)
Q Consensus       408 ~v~nR~  413 (420)
                      +|++.+
T Consensus       355 tLvD~D  360 (598)
T 3vh1_A          355 TFVDNG  360 (598)
T ss_dssp             EEECCS
T ss_pred             EEECCC
Confidence            999654

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.59  E-value=1.8e-05  Score=78.67  Aligned_cols=64  Identities=16%  Similarity=0.118  Sum_probs=51.7

Q ss_pred             CCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHH-hCCC-eEEEEeCChhhhhcC
Q 014691          344 DGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAK-AKGA-RVVIANRTYENLQRL  420 (420)
Q Consensus       344 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~-~~g~-~i~v~nR~~~ka~~L  420 (420)
                      .+.+.|+|||+.|++.+..  +.           ....+++.|||+|++|++.+.+|. ..++ +|+|+||+.++++++
T Consensus       105 ~~~lT~~RTaa~s~laa~~--la-----------~~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~l  170 (350)
T 1x7d_A          105 LTIATALRTAATSLMAAQA--LA-----------RPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKL  170 (350)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--HS-----------CTTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHH
T ss_pred             CCEEEeehhhHHHHHHHHH--hc-----------cccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHH
Confidence            4567889999999998863  32           124679999999999999998875 4566 999999999998753

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.50  E-value=3.1e-05  Score=76.05  Aligned_cols=63  Identities=16%  Similarity=0.095  Sum_probs=50.9

Q ss_pred             CeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHh-CCC-eEEEEeCChhhhhcC
Q 014691          345 GKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYENLQRL  420 (420)
Q Consensus       345 g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~-~g~-~i~v~nR~~~ka~~L  420 (420)
                      +.+.++||+..|++.+..  +.           ....++++|||+|++|++.+.+|.. .++ +|+|+||+.++++++
T Consensus       102 ~~lt~~RTaa~s~laa~~--la-----------~~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~l  166 (322)
T 1omo_A          102 TYTTSLRTGAAGGIAAKY--LA-----------RKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKF  166 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHH--HS-----------CTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHh--cc-----------CCCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHH
Confidence            346779999999988752  32           1246799999999999999999987 466 899999999998753

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=97.42  E-value=3.5e-05  Score=75.21  Aligned_cols=62  Identities=24%  Similarity=0.212  Sum_probs=51.1

Q ss_pred             CeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhC-CC-eEEEEeCChhhhhc
Q 014691          345 GKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYENLQR  419 (420)
Q Consensus       345 g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~-g~-~i~v~nR~~~ka~~  419 (420)
                      +.+.++|||..|++.+.  .+.           ....+++.|||+|.+|++.+.+|... |+ +|+++||+.+++++
T Consensus       112 ~~lt~~rT~a~~~la~~--~la-----------~~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~  175 (312)
T 2i99_A          112 NVITAKRTAAVSAIATK--FLK-----------PPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEK  175 (312)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHS-----------CTTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHH--HhC-----------CCCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHH
Confidence            45778999999998873  232           23467999999999999999999876 88 99999999998865

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.27  E-value=9e-05  Score=63.48  Aligned_cols=39  Identities=18%  Similarity=0.299  Sum_probs=36.4

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      +++++|||+|++|++++..|...|++|++++|+.+++++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~   59 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRA   59 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence            789999999999999999999999999999999998764

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=97.26  E-value=9.7e-06  Score=82.84  Aligned_cols=67  Identities=21%  Similarity=0.209  Sum_probs=51.8

Q ss_pred             HHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-eE
Q 014691          329 AKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RV  407 (420)
Q Consensus       329 A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~i  407 (420)
                      .+++|++|||+.+  +|++.|     .||...++..           ...+++++|+|+|+||.|..++..|+..|+ +|
T Consensus         6 ~~r~~~vntl~~~--~g~~~g-----~gf~~g~e~~-----------~~~L~~~~VlvvG~GGlGs~va~~La~aGvg~i   67 (434)
T 1tt5_B            6 EGRWNHVKKFLER--SGPFTH-----PDFEPSTESL-----------QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQI   67 (434)
T ss_dssp             TTTTHHHHHHHHS--CCSSCC-----TTCCCCSSHH-----------HHHHHTCCEEEECSSTHHHHHHHHHHHTTCCCE
T ss_pred             hhhhccceEEEcC--CCcccc-----cccccCHHHH-----------HHHhcCCEEEEECcCHHHHHHHHHHHHcCCCEE
Confidence            4678999999987  788766     5664433221           012356799999999999999999999999 99


Q ss_pred             EEEeCC
Q 014691          408 VIANRT  413 (420)
Q Consensus       408 ~v~nR~  413 (420)
                      +|++.+
T Consensus        68 ~ivD~D   73 (434)
T 1tt5_B           68 HVIDMD   73 (434)
T ss_dssp             EEEECC
T ss_pred             EEEcCC
Confidence            999654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.13  E-value=0.00037  Score=56.47  Aligned_cols=39  Identities=26%  Similarity=0.289  Sum_probs=35.4

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhhhhc
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKG-ARVVIANRTYENLQR  419 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g-~~i~v~nR~~~ka~~  419 (420)
                      +++++|+|+|++|++++..|...| .+|++++|+.++++.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~   44 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAV   44 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHH
Confidence            578999999999999999999999 599999999988753

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.12  E-value=0.00023  Score=73.41  Aligned_cols=43  Identities=26%  Similarity=0.306  Sum_probs=35.9

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhC-CCeEEEEeCChhhhhc
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAK-GARVVIANRTYENLQR  419 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~-g~~i~v~nR~~~ka~~  419 (420)
                      ..+++++++|+||||+|++++.+|.+. |++|+|++|+.+++++
T Consensus        19 ~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~   62 (467)
T 2axq_A           19 GRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQA   62 (467)
T ss_dssp             ----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHH
T ss_pred             cCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence            456788999999999999999999998 4599999999998764

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.07  E-value=0.00034  Score=70.66  Aligned_cols=41  Identities=41%  Similarity=0.635  Sum_probs=37.8

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      ++.|++++|+|+|++|++++..|...|+ +|+++||+.++++
T Consensus       164 ~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~  205 (404)
T 1gpj_A          164 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAV  205 (404)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHH
T ss_pred             cccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence            3578999999999999999999999999 9999999998874

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=97.05  E-value=0.0014  Score=62.57  Aligned_cols=131  Identities=14%  Similarity=0.137  Sum_probs=82.0

Q ss_pred             eeec-cCccccccHHHHHHHHHHcCCCceeeccc--c--ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHH
Q 014691          257 GIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLL--V--DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAK  330 (420)
Q Consensus       257 ~v~G-~pv~hS~SP~ihn~~f~~~gl~~~y~~~~--~--~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~  330 (420)
                      -++| +|-+++.--.- ....++.|+ .....++  +  +++.+.++.+ .++.+.|+-|-.|.-.    ++|+    -+
T Consensus        33 ilvg~dpaS~~Yv~~k-~k~~~~~Gi-~~~~~lp~~~s~~ell~~I~~lN~D~~v~GIlvqlPLP~----~id~----~~  102 (276)
T 3ngx_A           33 IQIGDNEAASIYARAK-IRRGKKIGI-AVDLEKYDDISMKDLLKRIDDLAKDPQINGIMIENPLPK----GFDY----YE  102 (276)
T ss_dssp             EEESCCHHHHHHHHHH-HHHHHHHTC-EEEEEEESSCCHHHHHHHHHHHHHCTTCCEEEECSCCCT----TCCH----HH
T ss_pred             EEeCCCHHHHHHHHHH-HHHHHHCCe-EEEEECCCCCCHHHHHHHHHHHcCCCCCcEEEEeCCCCC----CCCH----HH
Confidence            3456 44444443323 446788999 7655443  2  3566666666 5788999999999642    2221    12


Q ss_pred             HhcceeEEEEeccCCeEEEEe-------------cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHH
Q 014691          331 SIGAVNCIIRRQSDGKLFGYN-------------TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKAL  396 (420)
Q Consensus       331 ~iGAvNTi~~~~~~g~l~G~N-------------TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~  396 (420)
                      .+.+++.-.--  || ++-+|             .--.|++..|++.            . ++||+++|+|+|+ +|+.+
T Consensus       103 v~~~I~p~KDV--DG-~~p~n~G~l~~g~~~~~PcTp~gv~~lL~~~------------~-l~Gk~vvVvG~s~iVG~pl  166 (276)
T 3ngx_A          103 IVRNIPYYKDV--DA-LSPYNQGLIALNREFLVPATPRAVIDIMDYY------------G-YHENTVTIVNRSPVVGRPL  166 (276)
T ss_dssp             HHTTSCGGGBT--TC-CSHHHHHHHHTTCCSSCCHHHHHHHHHHHHH------------T-CCSCEEEEECCCTTTHHHH
T ss_pred             HHhhCCCCCcc--cC-CCccchhhhhcCCCCCCCCcHHHHHHHHHHh------------C-cCCCEEEEEcCChHHHHHH
Confidence            22222221100  12 11111             1126777777653            2 7899999999998 89999


Q ss_pred             HHHHHhCCCeEEEEeCC
Q 014691          397 AYGAKAKGARVVIANRT  413 (420)
Q Consensus       397 ~~aL~~~g~~i~v~nR~  413 (420)
                      +..|...|+.|++++|+
T Consensus       167 A~lL~~~gAtVtv~~~~  183 (276)
T 3ngx_A          167 SMMLLNRNYTVSVCHSK  183 (276)
T ss_dssp             HHHHHHTTCEEEEECTT
T ss_pred             HHHHHHCCCeEEEEeCC
Confidence            99999999999999874

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.92  E-value=0.0014  Score=56.59  Aligned_cols=42  Identities=26%  Similarity=0.422  Sum_probs=37.5

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      ...+++++|+|+|.+|+.++..|...|++|++++|++++++.
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~   57 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHR   57 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGG
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence            445789999999999999999999999999999999988764

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=96.91  E-value=0.0099  Score=54.02  Aligned_cols=121  Identities=17%  Similarity=0.162  Sum_probs=76.5

Q ss_pred             cEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691           24 TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDV  103 (420)
Q Consensus        24 ~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l  103 (420)
                      ..|+.+|.+.+.+++.+.++.+...|+|+||+|.-..   +..+.++.+.+..+.|+++-.     |+.  .+. +   .
T Consensus         7 ~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~~---~~~~~i~~i~~~~~~~l~vg~-----g~~--~~~-~---~   72 (212)
T 2v82_A            7 LPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSP---QWEQSIPAIVDAYGDKALIGA-----GTV--LKP-E---Q   72 (212)
T ss_dssp             SCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTST---THHHHHHHHHHHHTTTSEEEE-----ECC--CSH-H---H
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHhCCCCeEEEe-----ccc--cCH-H---H
Confidence            4567789999999999999998889999999985431   223445555555567777621     221  122 2   3


Q ss_pred             HHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          104 LRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       104 l~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      ++.+++.|+|+|=+.- ...++.+...   ..+.+++.+.|    |  .+|+    .+....|+|++++
T Consensus        73 i~~a~~~Gad~V~~~~-~~~~~~~~~~---~~g~~~~~g~~----t--~~e~----~~a~~~G~d~v~v  127 (212)
T 2v82_A           73 VDALARMGCQLIVTPN-IHSEVIRRAV---GYGMTVCPGCA----T--ATEA----FTALEAGAQALKI  127 (212)
T ss_dssp             HHHHHHTTCCEEECSS-CCHHHHHHHH---HTTCEEECEEC----S--HHHH----HHHHHTTCSEEEE
T ss_pred             HHHHHHcCCCEEEeCC-CCHHHHHHHH---HcCCCEEeecC----C--HHHH----HHHHHCCCCEEEE
Confidence            5677788999985332 2223333222   24567777755    2  2343    3446789999996

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.80  E-value=0.00045  Score=65.16  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=33.8

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~  414 (420)
                      +++++|+|+|+||+|..++..|+..|+ +|+|++++.
T Consensus        29 l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           29 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            557899999999999999999999999 999999987

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.77  E-value=0.0013  Score=63.51  Aligned_cols=42  Identities=29%  Similarity=0.423  Sum_probs=38.5

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..+.|++++|||+|++|++++..|..+|++|+++||+.++++
T Consensus       153 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~  194 (300)
T 2rir_A          153 YTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLA  194 (300)
T ss_dssp             SCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            467899999999999999999999999999999999987654

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.72  E-value=0.0015  Score=62.92  Aligned_cols=42  Identities=29%  Similarity=0.387  Sum_probs=38.1

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..+.|++++|||+|++|++++..|..+|++|+++||+.++.+
T Consensus       151 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~  192 (293)
T 3d4o_A          151 FTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLA  192 (293)
T ss_dssp             SCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence            357899999999999999999999999999999999987643

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.66  E-value=0.0017  Score=59.57  Aligned_cols=43  Identities=28%  Similarity=0.282  Sum_probs=35.9

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      ..++|++++|.|+ |+.|++++..|.+.|++|+++.|+.++.++
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~   60 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPE   60 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHH
Confidence            4678999999997 889999999999999999999999887653

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.61  E-value=0.0034  Score=64.64  Aligned_cols=42  Identities=36%  Similarity=0.421  Sum_probs=38.5

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..+.||+|+|+|+|++|++++..|+..|++|++++|++.+++
T Consensus       261 ~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~  302 (488)
T 3ond_A          261 VMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICAL  302 (488)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             CcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence            457899999999999999999999999999999999987754

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.56  E-value=0.0027  Score=62.10  Aligned_cols=129  Identities=16%  Similarity=0.085  Sum_probs=78.9

Q ss_pred             HHHHHHcCCCceeeccccc-cHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCC-----
Q 014691          273 NEAFKSVGFNGVFVHLLVD-DIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG-----  345 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~~-~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g-----  345 (420)
                      ....++.|+......++-+ ++.+.++.+ .++++.|+-|-.|.-..    +|+   . +.+.+++--.=-  ||     
T Consensus        58 ~k~~~~~Gi~~~~~~l~~~~~l~~~i~~lN~d~~v~GIlvqlPlp~~----~~~---~-~i~~~I~p~KDV--DG~~~~n  127 (320)
T 1edz_A           58 QKTSESMGFRYDLRVIEDKDFLEEAIIQANGDDSVNGIMVYFPVFGN----AQD---Q-YLQQVVCKEKDV--EGLNHVY  127 (320)
T ss_dssp             HHHHHHHTCEEEEEECSSGGGHHHHHHHHHHCTTCCEEEECSCSSSS----HHH---H-HHTTTSCTTTBT--TCCSHHH
T ss_pred             HHHHHHcCCEEEEEECCChHHHHHHHHHHcCCCCCCEEEEeCCCCCC----CCH---H-HHHhccCccccc--CcCChhh
Confidence            4467889999876666544 487888777 67889999999997432    211   1 112222111000  11     


Q ss_pred             --eEE-------------EE-ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchH-HHHHHHHHHhCCCeEE
Q 014691          346 --KLF-------------GY-NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGA-GKALAYGAKAKGARVV  408 (420)
Q Consensus       346 --~l~-------------G~-NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGa-ara~~~aL~~~g~~i~  408 (420)
                        +++             ++ -.--.|.+..|++. ...+ ..-+.+.+++|++++|||+|.+ |+.++..|...|+.|+
T Consensus       128 ~g~l~~~~~~l~~~~~~~~~~PcTp~a~v~ll~~~-~~~~-~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVt  205 (320)
T 1edz_A          128 YQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFL-KIYN-NLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVY  205 (320)
T ss_dssp             HHHHHTTCCBSSSSSCSBCCCCHHHHHHHHHHHHT-TCSC-TTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEE
T ss_pred             hHHHhcCCccccccccCCCcCCCcHHHHHHHHHhh-cccc-cccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEE
Confidence              000             00 01135666666652 0000 0000124789999999999985 9999999999999999


Q ss_pred             EEeCC
Q 014691          409 IANRT  413 (420)
Q Consensus       409 v~nR~  413 (420)
                      ++||+
T Consensus       206 v~nR~  210 (320)
T 1edz_A          206 SVDVN  210 (320)
T ss_dssp             EECSS
T ss_pred             EEeCc
Confidence            99998

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=96.55  E-value=0.061  Score=49.34  Aligned_cols=118  Identities=16%  Similarity=0.163  Sum_probs=71.8

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (420)
                      +...|...+.+++...++.+...|++++|+|...   ....+.++.+.+..+-.++ -.      |.. .+. +   -.+
T Consensus        18 ~i~v~r~~~~~~~~~~~~al~~gGv~~iel~~k~---~~~~~~i~~l~~~~~~~~v-ga------gtv-i~~-d---~~~   82 (214)
T 1wbh_A           18 VVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRT---ECAVDAIRAIAKEVPEAIV-GA------GTV-LNP-Q---QLA   82 (214)
T ss_dssp             EEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCS---TTHHHHHHHHHHHCTTSEE-EE------ESC-CSH-H---HHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHcCCCEEEEeCCC---hhHHHHHHHHHHHCcCCEE-ee------CEE-EEH-H---HHH
Confidence            4456788899999999999999999999999532   2233455556555532222 11      222 232 3   344


Q ss_pred             HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       106 ~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      .+++.|+|+|=.- ..+.+..+..   +..+..+|...|    ||  +|    ..++.+.|+|++|+
T Consensus        83 ~A~~aGAd~v~~p-~~d~~v~~~~---~~~g~~~i~G~~----t~--~e----~~~A~~~Gad~v~~  135 (214)
T 1wbh_A           83 EVTEAGAQFAISP-GLTEPLLKAA---TEGTIPLIPGIS----TV--SE----LMLGMDYGLKEFKF  135 (214)
T ss_dssp             HHHHHTCSCEEES-SCCHHHHHHH---HHSSSCEEEEES----SH--HH----HHHHHHTTCCEEEE
T ss_pred             HHHHcCCCEEEcC-CCCHHHHHHH---HHhCCCEEEecC----CH--HH----HHHHHHCCCCEEEE
Confidence            6778899998543 2333332222   224566666666    33  23    34556789999999

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=96.52  E-value=0.038  Score=51.11  Aligned_cols=118  Identities=19%  Similarity=0.218  Sum_probs=70.0

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (420)
                      |...|...+.+++...++.+.+.|++++|+|..   .....+.++.+.+..+ .+++-.      |. ..+. +   -.+
T Consensus        19 ii~vir~~~~~~~~~~~~al~~gGv~~iel~~k---~~~~~~~i~~l~~~~~-~l~vga------Gt-vl~~-d---~~~   83 (224)
T 1vhc_A           19 IVPVIALDNADDILPLADTLAKNGLSVAEITFR---SEAAADAIRLLRANRP-DFLIAA------GT-VLTA-E---QVV   83 (224)
T ss_dssp             EEEEECCSSGGGHHHHHHHHHHTTCCEEEEETT---STTHHHHHHHHHHHCT-TCEEEE------ES-CCSH-H---HHH
T ss_pred             eEEEEeCCCHHHHHHHHHHHHHcCCCEEEEecc---CchHHHHHHHHHHhCc-CcEEee------Cc-EeeH-H---HHH
Confidence            455678889999999999999999999999953   2233345655655553 233221      22 1222 3   344


Q ss_pred             HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       106 ~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      .+++.|+|+|=.- ..+.+..+...   +.+..+|.-.|    ||  +|    ..++.+.|+|++|+
T Consensus        84 ~A~~aGAd~v~~p-~~d~~v~~~ar---~~g~~~i~Gv~----t~--~e----~~~A~~~Gad~vk~  136 (224)
T 1vhc_A           84 LAKSSGADFVVTP-GLNPKIVKLCQ---DLNFPITPGVN----NP--MA----IEIALEMGISAVKF  136 (224)
T ss_dssp             HHHHHTCSEEECS-SCCHHHHHHHH---HTTCCEECEEC----SH--HH----HHHHHHTTCCEEEE
T ss_pred             HHHHCCCCEEEEC-CCCHHHHHHHH---HhCCCEEeccC----CH--HH----HHHHHHCCCCEEEE
Confidence            6778899999221 22222233222   23445554444    33  33    34566789999999

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=96.43  E-value=0.039  Score=49.66  Aligned_cols=117  Identities=21%  Similarity=0.206  Sum_probs=75.9

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC--CCcEEE-EeccCCCCCCCCCCHHHHH
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES--PVPTLF-TYRPIWEGGQYDGDENERV  101 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~--~~PiI~-T~R~~~eGG~~~~~~~~~~  101 (420)
                      .++..+...+.+++.+.++.+...|+|++|+-+.. +  ...+.++.+++..  +.++-+ |+.          +.+   
T Consensus        11 ~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~-~--~~~~~i~~ir~~~~~~~~ig~~~v~----------~~~---   74 (205)
T 1wa3_A           11 KIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTV-P--DADTVIKELSFLKEKGAIIGAGTVT----------SVE---   74 (205)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTS-T--THHHHHHHTHHHHHTTCEEEEESCC----------SHH---
T ss_pred             CEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCC-h--hHHHHHHHHHHHCCCCcEEEecccC----------CHH---
Confidence            35667889999999998888888899999986543 1  2223355555443  344433 222          222   


Q ss_pred             HHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          102 DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       102 ~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                       -.+.+.+.|+||| +--....+..+...   ..+..+|.-.|    ||  +|    ..++.+.|+|++|+
T Consensus        75 -~~~~a~~~Gad~i-v~~~~~~~~~~~~~---~~g~~vi~g~~----t~--~e----~~~a~~~Gad~vk~  130 (205)
T 1wa3_A           75 -QCRKAVESGAEFI-VSPHLDEEISQFCK---EKGVFYMPGVM----TP--TE----LVKAMKLGHTILKL  130 (205)
T ss_dssp             -HHHHHHHHTCSEE-ECSSCCHHHHHHHH---HHTCEEECEEC----SH--HH----HHHHHHTTCCEEEE
T ss_pred             -HHHHHHHcCCCEE-EcCCCCHHHHHHHH---HcCCcEECCcC----CH--HH----HHHHHHcCCCEEEE
Confidence             2456777899999 76666655554443   35778887554    33  23    44667899999997

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.37  E-value=0.0053  Score=61.10  Aligned_cols=42  Identities=26%  Similarity=0.403  Sum_probs=38.9

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      +++||+|+|+|+|.+|+.++..|.++|++|+++||+.+++++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~  211 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSA  211 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence            689999999999999999999999999999999999887653

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=96.34  E-value=0.0035  Score=59.97  Aligned_cols=42  Identities=40%  Similarity=0.496  Sum_probs=38.0

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      .|+||.+||-|+ +|.|++++..|++.|++|.+.+|+.++.++
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~   68 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDA   68 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            478999999996 789999999999999999999999887654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.28  E-value=0.0038  Score=62.09  Aligned_cols=41  Identities=32%  Similarity=0.379  Sum_probs=37.4

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+++++|+|+|+|++|++++..+..+|++|++++|+.++.+
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~  203 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQ  203 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence            46789999999999999999999999999999999987754

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.27  E-value=0.016  Score=58.00  Aligned_cols=111  Identities=15%  Similarity=0.159  Sum_probs=70.3

Q ss_pred             CCCceeeccccccHHHHHHHhc--CCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCCeEEEEecCHHH-
Q 014691          280 GFNGVFVHLLVDDIAKFFQTYS--SNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-  356 (420)
Q Consensus       280 gl~~~y~~~~~~~l~~~~~~~~--~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G-  356 (420)
                      |+|..=..+++.+.++|++.++  .+.|.|++.-==-....+..++++-..    ..            +-=+|-|-.| 
T Consensus       108 gid~~pi~ldv~~~dE~v~~vk~~~p~f~~i~lED~~~p~af~il~r~r~~----~~------------Ipvf~DDiqGT  171 (388)
T 1vl6_A          108 DIDAFPICLSESEEEKIISIVKSLEPSFGGINLEDIGAPKCFRILQRLSEE----MN------------IPVFHDDQQGT  171 (388)
T ss_dssp             CCEEEEEECSCCCHHHHHHHHHHTGGGCSEEEECSCCTTHHHHHHHHHHHH----CS------------SCEEEHHHHHH
T ss_pred             CCceEeEEeCCCCHHHHHHHHHHcCCcceEeCHhhcCCHHHHHHHHHhhhh----cC------------cceeccccccH
Confidence            6775445556667888877774  467888865331122334444433322    11            1223445333 


Q ss_pred             -------HHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC----hhhh
Q 014691          357 -------AISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT----YENL  417 (420)
Q Consensus       357 -------~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~----~~ka  417 (420)
                             ++++++-.           +.++++.+++|+|||-+|.+++..|..+|+ +|+++||+    .+|+
T Consensus       172 asV~lAal~~A~~i~-----------g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~  233 (388)
T 1vl6_A          172 AVVVSAAFLNALKLT-----------EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDP  233 (388)
T ss_dssp             HHHHHHHHHHHHHHH-----------TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSG
T ss_pred             HHHHHHHHHHHHHHh-----------CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCc
Confidence                   33333311           136788999999999999999999999999 99999998    6554

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.27  E-value=0.0038  Score=62.34  Aligned_cols=41  Identities=34%  Similarity=0.393  Sum_probs=37.4

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+.+++|+|+|+|++|++++..+..+|++|++++|+.++.+
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~  205 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLR  205 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            46789999999999999999999999999999999988754

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.27  E-value=0.0042  Score=58.54  Aligned_cols=43  Identities=33%  Similarity=0.504  Sum_probs=37.6

Q ss_pred             ccccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          376 SSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       376 ~~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ...+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+
T Consensus        16 ~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~   59 (267)
T 1vl8_A           16 VFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEAS   59 (267)
T ss_dssp             -CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            35688999999996 78999999999999999999999987654

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=96.26  E-value=0.061  Score=49.02  Aligned_cols=117  Identities=21%  Similarity=0.199  Sum_probs=69.3

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (420)
                      .|...+...+.+++...++.+...|+++||+|.-.   .+..+.++.+++ .+  +++-.      |. -.. .+   -+
T Consensus        14 ~ii~vi~~~~~~~~~~~~~~l~~gGv~~iel~~k~---~~~~~~i~~~~~-~~--~~~ga------g~-vl~-~d---~~   76 (207)
T 2yw3_A           14 RLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRT---EKGLEALKALRK-SG--LLLGA------GT-VRS-PK---EA   76 (207)
T ss_dssp             CEEEEECCCSCCCHHHHHHHHHHTTCCEEEEECSS---THHHHHHHHHTT-SS--CEEEE------ES-CCS-HH---HH
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCC---hHHHHHHHHHhC-CC--CEEEe------Ce-Eee-HH---HH
Confidence            35556778888888888888888899999999542   122233444443 22  22221      22 122 23   34


Q ss_pred             HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       105 ~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      +.+++.|+++|=.- ..+.+..+....   .+..+|...|    ||  +|    ..++.+.|+|++|+
T Consensus        77 ~~A~~~GAd~v~~~-~~d~~v~~~~~~---~g~~~i~G~~----t~--~e----~~~A~~~Gad~v~~  130 (207)
T 2yw3_A           77 EAALEAGAAFLVSP-GLLEEVAALAQA---RGVPYLPGVL----TP--TE----VERALALGLSALKF  130 (207)
T ss_dssp             HHHHHHTCSEEEES-SCCHHHHHHHHH---HTCCEEEEEC----SH--HH----HHHHHHTTCCEEEE
T ss_pred             HHHHHcCCCEEEcC-CCCHHHHHHHHH---hCCCEEecCC----CH--HH----HHHHHHCCCCEEEE
Confidence            56778899998543 333333333322   3455666666    33  23    34455689999999

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.17  E-value=0.0035  Score=61.75  Aligned_cols=37  Identities=16%  Similarity=0.287  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~  414 (420)
                      .+++++|+|+|+||+|.+++..|+..|+ +|+|++++.
T Consensus        31 kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           31 IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            3578999999999999999999999999 999999864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.14  E-value=0.0037  Score=55.27  Aligned_cols=42  Identities=17%  Similarity=0.169  Sum_probs=37.5

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhC-CCeEEEEeCChhhhhc
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAK-GARVVIANRTYENLQR  419 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~-g~~i~v~nR~~~ka~~  419 (420)
                      +..+++++|+|+|.+|+.++..|... |++|++++|++++++.
T Consensus        36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~   78 (183)
T 3c85_A           36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQ   78 (183)
T ss_dssp             CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHH
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHH
Confidence            45577899999999999999999999 9999999999988753

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.14  E-value=0.0046  Score=58.42  Aligned_cols=43  Identities=33%  Similarity=0.411  Sum_probs=38.2

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      ..++||++||.|+ ||.|++++..|++.|++|++++|+.++.++
T Consensus        26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~   69 (281)
T 3ppi_A           26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKA   69 (281)
T ss_dssp             GGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHH
Confidence            4578999999996 789999999999999999999999887653

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.09  E-value=0.0058  Score=57.96  Aligned_cols=43  Identities=37%  Similarity=0.506  Sum_probs=38.0

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      .+++||++||.|+ ||.|++++..|++.|++|++++|+.++.++
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~   71 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQV   71 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            3578999999996 889999999999999999999999877653

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.09  E-value=0.0041  Score=58.58  Aligned_cols=35  Identities=29%  Similarity=0.471  Sum_probs=32.1

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      +++++|+|+|+||+|.+++.+|+..|+ +|+|++++
T Consensus        26 l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           26 LLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             HHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             HhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            567899999999999999999999999 99999664

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.07  E-value=0.0043  Score=62.06  Aligned_cols=41  Identities=24%  Similarity=0.236  Sum_probs=37.0

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+.+++|+|+|+|++|++++..+..+|++|++++|+.++.+
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~  209 (384)
T 1l7d_A          169 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKE  209 (384)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            45789999999999999999999999999999999977653

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.05  E-value=0.0044  Score=57.98  Aligned_cols=42  Identities=38%  Similarity=0.493  Sum_probs=38.0

Q ss_pred             cccCCCEEEEEcc-c-hHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-G-GAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-G-Gaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..+++|++||.|+ | |.|++++..|.+.|++|++++|+.++.+
T Consensus        18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~   61 (266)
T 3o38_A           18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLG   61 (266)
T ss_dssp             STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHH
Confidence            4578999999998 8 8999999999999999999999987754

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=96.00  E-value=0.18  Score=46.72  Aligned_cols=118  Identities=16%  Similarity=0.141  Sum_probs=73.8

Q ss_pred             HHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcE
Q 014691           35 VDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADY  114 (420)
Q Consensus        35 ~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~  114 (420)
                      .+++.+-++.+...|+.+|+.  .      ..+.++.+++..++|+|--+|....|-.+-.++  +.+-.+.+.+.|+|+
T Consensus        35 ~~~~~~~A~a~~~~Ga~~i~~--~------~~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~--~~~~i~~~~~aGad~  104 (229)
T 3q58_A           35 PEIVAAMAQAAASAGAVAVRI--E------GIENLRTVRPHLSVPIIGIIKRDLTGSPVRITP--YLQDVDALAQAGADI  104 (229)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEE--E------SHHHHHHHGGGCCSCEEEECBCCCSSCCCCBSC--SHHHHHHHHHHTCSE
T ss_pred             cchHHHHHHHHHHCCCcEEEE--C------CHHHHHHHHHhcCCCEEEEEeecCCCCceEeCc--cHHHHHHHHHcCCCE
Confidence            566777777777789999886  1      235788888888999987666422221122222  222345567889999


Q ss_pred             EEEEccc--ccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          115 IDVELQV--AREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       115 iDiEl~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      |=+....  .++...++. ..+..+..++.+.|+      .++    .+++.+.|+|++-+
T Consensus       105 I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t------~ee----a~~a~~~Gad~Ig~  155 (229)
T 3q58_A          105 IAFDASFRSRPVDIDSLLTRIRLHGLLAMADCST------VNE----GISCHQKGIEFIGT  155 (229)
T ss_dssp             EEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSS------HHH----HHHHHHTTCSEEEC
T ss_pred             EEECccccCChHHHHHHHHHHHHCCCEEEEecCC------HHH----HHHHHhCCCCEEEe
Confidence            9777642  222333333 223457889998884      223    45677889999953

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=95.97  E-value=0.0068  Score=57.49  Aligned_cols=43  Identities=30%  Similarity=0.383  Sum_probs=38.0

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.+++++
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~   66 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVR   66 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            4578999999986 789999999999999999999999887653

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=95.96  E-value=0.013  Score=59.34  Aligned_cols=41  Identities=29%  Similarity=0.297  Sum_probs=37.6

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      ..+.||+++|+|.|.+|++++..|..+|++|++++|++.++
T Consensus       216 ~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra  256 (435)
T 3gvp_A          216 MMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICA  256 (435)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred             ceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhh
Confidence            46789999999999999999999999999999999998654

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=95.96  E-value=0.0058  Score=61.58  Aligned_cols=41  Identities=32%  Similarity=0.242  Sum_probs=37.0

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+.+++|+|+|+|++|++++..+..+|++|+++||+.++.+
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~  209 (401)
T 1x13_A          169 KVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKE  209 (401)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence            35689999999999999999999999999999999987754

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=95.93  E-value=0.08  Score=48.95  Aligned_cols=118  Identities=15%  Similarity=0.163  Sum_probs=69.4

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (420)
                      |...+...+.+++...++.+...|++++|+|...   ....+.++.+.+..+ .+++-.      |.. .+. +   -.+
T Consensus        28 ii~V~r~~~~~~~~~~~~al~~gGv~~iel~~k~---~~~~~~i~~l~~~~~-~~~iga------gtv-l~~-d---~~~   92 (225)
T 1mxs_A           28 ILPVITIAREEDILPLADALAAGGIRTLEVTLRS---QHGLKAIQVLREQRP-ELCVGA------GTV-LDR-S---MFA   92 (225)
T ss_dssp             EEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSS---THHHHHHHHHHHHCT-TSEEEE------ECC-CSH-H---HHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEecCC---ccHHHHHHHHHHhCc-ccEEee------CeE-eeH-H---HHH
Confidence            4445678899999999999999999999999542   222334555555442 222211      221 232 2   345


Q ss_pred             HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       106 ~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      .+++.|+|+|=.- ..+.+..+..   +..+..+|...|    ||  +|    ..++.+.|+|++|+
T Consensus        93 ~A~~aGAd~v~~p-~~d~~v~~~~---~~~g~~~i~G~~----t~--~e----~~~A~~~Gad~vk~  145 (225)
T 1mxs_A           93 AVEAAGAQFVVTP-GITEDILEAG---VDSEIPLLPGIS----TP--SE----IMMGYALGYRRFKL  145 (225)
T ss_dssp             HHHHHTCSSEECS-SCCHHHHHHH---HHCSSCEECEEC----SH--HH----HHHHHTTTCCEEEE
T ss_pred             HHHHCCCCEEEeC-CCCHHHHHHH---HHhCCCEEEeeC----CH--HH----HHHHHHCCCCEEEE
Confidence            6778899998432 2222222221   224556665555    44  23    34556789999999

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=95.93  E-value=0.0057  Score=57.27  Aligned_cols=42  Identities=43%  Similarity=0.619  Sum_probs=37.4

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++.++
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~   68 (262)
T 3rkr_A           26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRA   68 (262)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            467899999986 889999999999999999999999887653

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=95.91  E-value=0.0076  Score=56.80  Aligned_cols=42  Identities=31%  Similarity=0.400  Sum_probs=37.4

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~   59 (273)
T 1ae1_A           17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELD   59 (273)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            4578999999996 88999999999999999999999987654

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=95.86  E-value=0.0062  Score=57.56  Aligned_cols=42  Identities=29%  Similarity=0.404  Sum_probs=37.4

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..+++|.+||.|+ ||.|++++..|++.|++|++++|+.++++
T Consensus        24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~   66 (270)
T 3ftp_A           24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAE   66 (270)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            4578999999986 88999999999999999999999987765

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=95.85  E-value=0.0083  Score=56.54  Aligned_cols=41  Identities=37%  Similarity=0.511  Sum_probs=36.5

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+++|++||.|+ ||.|++++..|.+.|++|++++|+.++.+
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~   70 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIE   70 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHH
Confidence            478999999986 88999999999999999999999977654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=95.85  E-value=0.0083  Score=57.56  Aligned_cols=42  Identities=31%  Similarity=0.476  Sum_probs=37.5

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      .++||++||.|+ ||.|++++..|++.|++|++++|+.++.++
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~   70 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQ   70 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            478999999996 789999999999999999999999887653

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=95.84  E-value=0.0058  Score=58.04  Aligned_cols=43  Identities=33%  Similarity=0.436  Sum_probs=36.9

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      .+++||.+||.|+ ||.|++++..|++.|++|++++|+.+++++
T Consensus        25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~   68 (277)
T 3gvc_A           25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADA   68 (277)
T ss_dssp             --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            3578999999986 789999999999999999999999877653

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=95.83  E-value=0.0057  Score=58.00  Aligned_cols=42  Identities=29%  Similarity=0.415  Sum_probs=37.2

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+++||+++|.|+ ||.|++++..|++.|++|++++|+.++.+
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~   71 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTA   71 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence            3578999999996 78999999999999999999999987654

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=95.83  E-value=0.0067  Score=57.21  Aligned_cols=43  Identities=35%  Similarity=0.478  Sum_probs=38.1

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      ..++||++||.|+ ||.|++++..|++.|++|.+++|+.++.++
T Consensus        23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~   66 (266)
T 3grp_A           23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKE   66 (266)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            4578999999986 789999999999999999999999887653

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=95.81  E-value=0.0057  Score=58.17  Aligned_cols=42  Identities=31%  Similarity=0.503  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..++||.+||.|+ ||.|++++..|++.|++|++++|+.++.+
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~   71 (281)
T 4dry_A           29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLD   71 (281)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            3578999999996 78999999999999999999999987754

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=95.81  E-value=0.0083  Score=56.82  Aligned_cols=41  Identities=39%  Similarity=0.595  Sum_probs=36.8

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ++++|+++|.|+ ||.|++++..|++.|++|++++|+.++++
T Consensus        26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~   67 (276)
T 2b4q_A           26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACA   67 (276)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            478999999996 78999999999999999999999987654

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=95.80  E-value=0.01  Score=56.12  Aligned_cols=42  Identities=26%  Similarity=0.343  Sum_probs=37.2

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..++||++||.|+ ||.|++++..|++.|++|++++|+.++.+
T Consensus        23 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~   65 (277)
T 4fc7_A           23 DLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVL   65 (277)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHH
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            3578999999996 78999999999999999999999987654

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=95.80  E-value=0.009  Score=56.48  Aligned_cols=41  Identities=29%  Similarity=0.426  Sum_probs=36.6

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+++|++||.|+ ||.|++++..|.+.|++|++++|+.++.+
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~   60 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLR   60 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            477899999986 78999999999999999999999987654

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=95.80  E-value=0.0067  Score=55.44  Aligned_cols=40  Identities=23%  Similarity=0.361  Sum_probs=34.9

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      ..+++.|||+|.+|++++..|...|.+|++++|+.++++.
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~   66 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTAR   66 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            3468999999999999999999999999999999887653

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=95.80  E-value=0.12  Score=48.16  Aligned_cols=119  Identities=17%  Similarity=0.156  Sum_probs=76.8

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (420)
                      .|...+...+.+++..-++.+...|+++||+++..-   +..+.++.+++..+-.+|=.      |..  .+.    +-.
T Consensus        35 ~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~---~a~e~I~~l~~~~~~~~iGa------GTV--lt~----~~a   99 (232)
T 4e38_A           35 KVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRSD---AAVEAIRLLRQAQPEMLIGA------GTI--LNG----EQA   99 (232)
T ss_dssp             CEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTST---THHHHHHHHHHHCTTCEEEE------ECC--CSH----HHH
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCC---CHHHHHHHHHHhCCCCEEeE------CCc--CCH----HHH
Confidence            356678899999999999998999999999998742   22345666666554344421      222  232    235


Q ss_pred             HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       105 ~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      +.+++.|+++| +-=..+++..+...   +.+..+|-...    ||+  |    +.++.++|+|++|+
T Consensus       100 ~~Ai~AGA~fI-vsP~~~~~vi~~~~---~~gi~~ipGv~----Tpt--E----i~~A~~~Gad~vK~  153 (232)
T 4e38_A          100 LAAKEAGATFV-VSPGFNPNTVRACQ---EIGIDIVPGVN----NPS--T----VEAALEMGLTTLKF  153 (232)
T ss_dssp             HHHHHHTCSEE-ECSSCCHHHHHHHH---HHTCEEECEEC----SHH--H----HHHHHHTTCCEEEE
T ss_pred             HHHHHcCCCEE-EeCCCCHHHHHHHH---HcCCCEEcCCC----CHH--H----HHHHHHcCCCEEEE
Confidence            56788899998 22233344443332   34777777654    553  3    44556799999998

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=95.78  E-value=0.007  Score=58.06  Aligned_cols=42  Identities=29%  Similarity=0.416  Sum_probs=37.5

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~   79 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELS   79 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            4578999999986 78999999999999999999999987764

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=95.72  E-value=0.0057  Score=57.86  Aligned_cols=42  Identities=31%  Similarity=0.510  Sum_probs=37.7

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+++||++||.|+ ||.|++++..|++.|++|++++|+.++++
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~   64 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVA   64 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            4678999999996 78999999999999999999999987765

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.71  E-value=0.0069  Score=58.47  Aligned_cols=37  Identities=16%  Similarity=0.278  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~  414 (420)
                      .+++++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus        33 kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           33 KIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            4567899999999999999999999999 999999875

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=95.68  E-value=0.012  Score=55.38  Aligned_cols=42  Identities=21%  Similarity=0.436  Sum_probs=37.1

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~   69 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLE   69 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHH
Confidence            4578999999996 78999999999999999999999987654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=95.64  E-value=0.011  Score=56.31  Aligned_cols=42  Identities=26%  Similarity=0.374  Sum_probs=36.0

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      .+++|.+||.|+ ||.|++++..|++.|++|.+++|+.+++++
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~   67 (283)
T 3v8b_A           25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEE   67 (283)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            467899999996 789999999999999999999999877653

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=95.63  E-value=0.021  Score=58.08  Aligned_cols=41  Identities=34%  Similarity=0.381  Sum_probs=37.7

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      ..+.||+++|+|.|.+|++++..|..+|++|++++|++.++
T Consensus       243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a  283 (464)
T 3n58_A          243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICA  283 (464)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHH
T ss_pred             CcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchh
Confidence            56889999999999999999999999999999999987654

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=95.63  E-value=0.01  Score=56.28  Aligned_cols=41  Identities=27%  Similarity=0.271  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      -+++|++||.|+ ||.|++++..|++.|++|++++|+.++++
T Consensus        21 m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~   62 (279)
T 3sju_A           21 MSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVS   62 (279)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            457899999996 88999999999999999999999988765

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=95.63  E-value=0.011  Score=56.04  Aligned_cols=42  Identities=31%  Similarity=0.510  Sum_probs=37.3

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+
T Consensus        22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~   64 (302)
T 1w6u_A           22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLK   64 (302)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            4578999999996 78999999999999999999999987654

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=95.60  E-value=0.012  Score=55.13  Aligned_cols=42  Identities=26%  Similarity=0.345  Sum_probs=35.0

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~   59 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE   59 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc
Confidence            4577899999996 78999999999999999999999876543

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=95.57  E-value=0.0094  Score=56.44  Aligned_cols=42  Identities=43%  Similarity=0.658  Sum_probs=37.3

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+
T Consensus        24 ~~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~   66 (286)
T 1xu9_A           24 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQ   66 (286)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             hhcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            3478999999997 88999999999999999999999987654

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}

Probab=95.56  E-value=1.2  Score=45.55  Aligned_cols=211  Identities=11%  Similarity=0.044  Sum_probs=134.8

Q ss_pred             HHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHH
Q 014691           36 DKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRLA  107 (420)
Q Consensus        36 ~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~  107 (420)
                      ++.+.-++.+.+.|.+.||.=    .|.   |-..++.+.++.+++.. +.++..-+|..+--|..+..++-....++.+
T Consensus        30 ~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~~d~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv~~~~v~~a  109 (464)
T 2nx9_A           30 DDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLGEDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDTFVERA  109 (464)
T ss_dssp             GGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTCCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEeCcCccccchhhccCCCHHHHHHHHHHhCCCCeEEEEeccccccCcccccchhhHHHHHHH
Confidence            333333444455799999995    231   11234455677766542 4556555776555565444555556678889


Q ss_pred             HHhCCcEEEEEccccc-chhHHH-hhcCCCCcEEEEEcccCCCCC-CHHHHHHHHHHHHHcCCCEEEEEeec--CCHHHH
Q 014691          108 MELGADYIDVELQVAR-EFNDSI-RGKKPEKCKVIVSSHNYQYTP-SVEDLSNLVARIQASGADIVKFATTA--LDITDV  182 (420)
Q Consensus       108 ~~~~~d~iDiEl~~~~-~~~~~l-~~~~~~~~kiI~S~H~f~~tP-~~~el~~~~~~~~~~gaDivKia~~~--~s~~D~  182 (420)
                      .+.|++.|-|=....+ +.+... ...+..+..+..+.|.+..++ +.+.+.+..+++.+.|||++-|+=|.  -++.++
T Consensus       110 ~~~Gvd~i~if~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l~DT~G~~~P~~v  189 (464)
T 2nx9_A          110 VKNGMDVFRVFDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIALKDMAGILTPYAA  189 (464)
T ss_dssp             HHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCHHHH
T ss_pred             HhCCcCEEEEEEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCcCHHHH
Confidence            9999999887433221 122222 223456778888888766666 66789999999999999999998665  478999


Q ss_pred             HHHHHHhcc-CCCCEEEE--ecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhcc
Q 014691          183 ARVFQITVH-SQVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFR  247 (420)
Q Consensus       183 ~~ll~~~~~-~~~p~I~~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~  247 (420)
                      .++.+.+.. .+.|+-..  +..-++...=+..-.-|....=+++..- .-..||++++++...++..
T Consensus       190 ~~lv~~l~~~~~~~i~~H~Hnd~GlAvAN~laAv~AGa~~VD~ti~g~-gertGN~~lE~lv~~L~~~  256 (464)
T 2nx9_A          190 EELVSTLKKQVDVELHLHCHSTAGLADMTLLKAIEAGVDRVDTAISSM-SGTYGHPATESLVATLQGT  256 (464)
T ss_dssp             HHHHHHHHHHCCSCEEEEECCTTSCHHHHHHHHHHTTCSEEEEBCGGG-CSTTSCCBHHHHHHHHTTS
T ss_pred             HHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccc-CCCCcCHHHHHHHHHHHhc
Confidence            888877643 36666544  4444555555555555655444555432 2347999999988777653

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.55  E-value=0.0086  Score=59.86  Aligned_cols=41  Identities=24%  Similarity=0.175  Sum_probs=37.0

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+.+++|+|+|+|.+|+.++..+..+|++|++++|+.++.+
T Consensus       181 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~  221 (381)
T 3p2y_A          181 TVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAE  221 (381)
T ss_dssp             EECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHH
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            35678999999999999999999999999999999987754

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=95.50  E-value=0.33  Score=44.91  Aligned_cols=117  Identities=17%  Similarity=0.101  Sum_probs=73.4

Q ss_pred             HHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCC-CCCCHHHHHHHHHHHHHhCCc
Q 014691           35 VDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQ-YDGDENERVDVLRLAMELGAD  113 (420)
Q Consensus        35 ~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~-~~~~~~~~~~ll~~~~~~~~d  113 (420)
                      .+++.+.++.+...|+.+++.  .      ..+.++.+++..++|+|--+|. .-||. +-.++  +++-.+.+.+.|+|
T Consensus        35 ~~~~~~~A~a~~~~Ga~~i~~--~------~~~~i~~ir~~v~~Pvig~~k~-d~~~~~~~I~~--~~~~i~~~~~~Gad  103 (232)
T 3igs_A           35 PEIVAAMALAAEQAGAVAVRI--E------GIDNLRMTRSLVSVPIIGIIKR-DLDESPVRITP--FLDDVDALAQAGAA  103 (232)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEE--E------SHHHHHHHHTTCCSCEEEECBC-CCSSCCCCBSC--SHHHHHHHHHHTCS
T ss_pred             cchHHHHHHHHHHCCCeEEEE--C------CHHHHHHHHHhcCCCEEEEEee-cCCCcceEeCc--cHHHHHHHHHcCCC
Confidence            566777777777889999876  1      2356888888889999755553 33441 22222  22334556788999


Q ss_pred             EEEEEccc--ccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          114 YIDVELQV--AREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       114 ~iDiEl~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      +|=+....  .++..+++. ..+..+..++.+.|+      .++    .+++.+.|+|++-+
T Consensus       104 ~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t------~ee----a~~a~~~Gad~Ig~  155 (232)
T 3igs_A          104 IIAVDGTARQRPVAVEALLARIHHHHLLTMADCSS------VDD----GLACQRLGADIIGT  155 (232)
T ss_dssp             EEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCS------HHH----HHHHHHTTCSEEEC
T ss_pred             EEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCC------HHH----HHHHHhCCCCEEEE
Confidence            99776642  223333333 223457889998884      222    45677899999953

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.50  E-value=0.0097  Score=57.03  Aligned_cols=41  Identities=29%  Similarity=0.521  Sum_probs=36.4

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+++|++||.|+ ||.|++++..|.+.|++|++++|+.++.+
T Consensus        23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~   64 (297)
T 1xhl_A           23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLE   64 (297)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            367899999986 78999999999999999999999987654

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=95.50  E-value=0.0093  Score=56.44  Aligned_cols=42  Identities=33%  Similarity=0.506  Sum_probs=35.1

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      .+.+|.+||.|+ ||.|++++..|++.|++|++++|+.++.++
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~   67 (272)
T 4dyv_A           25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQE   67 (272)
T ss_dssp             ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            456889999986 789999999999999999999999887653

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=95.43  E-value=0.0087  Score=59.24  Aligned_cols=36  Identities=19%  Similarity=0.451  Sum_probs=33.0

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~  414 (420)
                      +++++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus       116 L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          116 LKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            457899999999999999999999999 999999863

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=95.32  E-value=0.01  Score=55.67  Aligned_cols=41  Identities=27%  Similarity=0.315  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      .++++|++||.|+ ||.|++++..|++.|++|++++|+.++.
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~   64 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHAS   64 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHH
Confidence            4577899999996 8899999999999999999999987653

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.31  E-value=0.019  Score=54.67  Aligned_cols=40  Identities=30%  Similarity=0.476  Sum_probs=35.5

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..++||++||.|+ ||.|++++..|++.|++|.+++|+.++
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   83 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEG   83 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence            3578999999996 889999999999999999999998653

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=95.31  E-value=0.017  Score=55.30  Aligned_cols=40  Identities=25%  Similarity=0.253  Sum_probs=35.7

Q ss_pred             cccCCCEEEEEccc---hHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaG---Gaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..++||++||.|++   |.|++++..|++.|++|++++|+.+.
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~   68 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETF   68 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            45789999999985   99999999999999999999998644

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=95.30  E-value=0.016  Score=57.07  Aligned_cols=40  Identities=43%  Similarity=0.578  Sum_probs=36.4

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..++||++||.|+ ||.|++++..|++.|++|+++.|+.++
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~   81 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQP   81 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSC
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhh
Confidence            4678999999996 889999999999999999999999765

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.30  E-value=0.014  Score=56.70  Aligned_cols=40  Identities=20%  Similarity=0.246  Sum_probs=36.7

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      ..+++.|||+|.+|++++..|...|.+|+++||+++++++
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~   69 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAAS   69 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHH
Confidence            4569999999999999999999999999999999988764

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=95.28  E-value=0.011  Score=55.69  Aligned_cols=41  Identities=39%  Similarity=0.665  Sum_probs=35.9

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .++||++||.|+ ||.|++++..|++.|++|++++|+.++.+
T Consensus        25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~   66 (266)
T 3uxy_A           25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA   66 (266)
T ss_dssp             -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            567999999986 78999999999999999999999877654

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=95.26  E-value=0.24  Score=45.45  Aligned_cols=112  Identities=15%  Similarity=0.186  Sum_probs=71.1

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEe-c--CCCCCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCH
Q 014691           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRL-D--GLKNFNP-RENIKTLIKESPVPTLFTYRPIWEGGQYDGDE   97 (420)
Q Consensus        22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRl-D--~l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~   97 (420)
                      ..++|+.+|..-|..++.++++.+.+.|+|++++|+ |  +.++... .+.++.+++..+.|+.+.+=..        ++
T Consensus         5 ~~~~i~psi~a~d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~--------d~   76 (228)
T 1h1y_A            5 AAAKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVT--------NP   76 (228)
T ss_dssp             -CCEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESS--------CG
T ss_pred             cCCeEEEEeeeCCHHHHHHHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhcCCcEEEEEEec--------CH
Confidence            357899999999999999999998888999999996 2  2222211 3456677666667777665532        11


Q ss_pred             HHHHHHHHHHHHhCCcEEEEEcccccch-hHHHhhcCCCCcEEEEEcc
Q 014691           98 NERVDVLRLAMELGADYIDVELQVAREF-NDSIRGKKPEKCKVIVSSH  144 (420)
Q Consensus        98 ~~~~~ll~~~~~~~~d~iDiEl~~~~~~-~~~l~~~~~~~~kiI~S~H  144 (420)
                      +.+   ++.+++.|+|+|-+=....++. .+.+...+..+.++++|.+
T Consensus        77 ~~~---i~~~~~agad~v~vH~~~~~~~~~~~~~~i~~~g~~igv~~~  121 (228)
T 1h1y_A           77 SDY---VEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLR  121 (228)
T ss_dssp             GGG---HHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEEC
T ss_pred             HHH---HHHHHHcCCCEEEECCCCcccHHHHHHHHHHHcCCCEEEEEe
Confidence            233   4455667899987655443333 1112111234677777774

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.22  E-value=0.011  Score=54.70  Aligned_cols=39  Identities=23%  Similarity=0.345  Sum_probs=35.7

Q ss_pred             ccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       376 ~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+++|++|||+|+|.+|...+..|.+.|++|+|++++.
T Consensus        26 fl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~   64 (223)
T 3dfz_A           26 MLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV   64 (223)
T ss_dssp             EECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            357899999999999999999999999999999999764

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.19  E-value=0.013  Score=61.74  Aligned_cols=37  Identities=16%  Similarity=0.287  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~  414 (420)
                      .+++++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus       323 kL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          323 IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            4678999999999999999999999999 999999864

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=95.16  E-value=1.2  Score=40.14  Aligned_cols=117  Identities=15%  Similarity=0.143  Sum_probs=69.5

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCC-CHHHHHHHHHHHHHhCC
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDG-DENERVDVLRLAMELGA  112 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~-~~~~~~~ll~~~~~~~~  112 (420)
                      +.+...+.++.+.+.|++.++.  |      ..+.++.+++..++|++-.+|....|+..-. ...++   ++.+++.|+
T Consensus        21 ~~~~~~~~a~~~~~~Ga~~i~~--~------~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~---i~~~~~~Ga   89 (223)
T 1y0e_A           21 SSFIMSKMALAAYEGGAVGIRA--N------TKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKE---VDELIESQC   89 (223)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEE--E------SHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHH---HHHHHHHTC
T ss_pred             CCccHHHHHHHHHHCCCeeecc--C------CHHHHHHHHHhcCCCEEeeeccCCCccccccCCcHHH---HHHHHhCCC
Confidence            4455555566666789999976  3      1246778877789999766554432433322 22233   445677899


Q ss_pred             cEEEEEcccc-------cchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          113 DYIDVELQVA-------REFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       113 d~iDiEl~~~-------~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      |+|-+.....       .++++.+...- ++..++.+.|+      .++    ..++.+.|+|++.+
T Consensus        90 d~v~l~~~~~~~p~~~~~~~i~~~~~~~-~~~~v~~~~~t------~~e----~~~~~~~G~d~i~~  145 (223)
T 1y0e_A           90 EVIALDATLQQRPKETLDELVSYIRTHA-PNVEIMADIAT------VEE----AKNAARLGFDYIGT  145 (223)
T ss_dssp             SEEEEECSCSCCSSSCHHHHHHHHHHHC-TTSEEEEECSS------HHH----HHHHHHTTCSEEEC
T ss_pred             CEEEEeeecccCcccCHHHHHHHHHHhC-CCceEEecCCC------HHH----HHHHHHcCCCEEEe
Confidence            9987765431       13344444321 36777777762      223    33467789999764

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=95.15  E-value=0.038  Score=54.67  Aligned_cols=56  Identities=30%  Similarity=0.433  Sum_probs=46.3

Q ss_pred             HHHHHHHHHhhhccCCCCCCCccc-ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSS-ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~-~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ++|.+..++..+...       +. +++||++.|+|.|.+|+.++..|..+|++|.+++++.++
T Consensus       154 g~Gv~~~~~~~~~~~-------G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~  210 (355)
T 1c1d_A          154 AVGVFEAMKATVAHR-------GLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER  210 (355)
T ss_dssp             HHHHHHHHHHHHHHT-------TCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             HHHHHHHHHHHHHhc-------CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH
Confidence            677777777665431       24 689999999999999999999999999998899988654

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=95.15  E-value=0.019  Score=54.42  Aligned_cols=41  Identities=24%  Similarity=0.391  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeC-Chhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR-~~~ka  417 (420)
                      .++.+|++||.|+ ||.|++++..|++.|++|++++| +.++.
T Consensus        21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~   63 (281)
T 3v2h_A           21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEI   63 (281)
T ss_dssp             -CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHH
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHH
Confidence            3577899999996 78999999999999999999999 54443

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=95.12  E-value=0.011  Score=56.05  Aligned_cols=42  Identities=33%  Similarity=0.354  Sum_probs=34.8

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCCh-hhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY-ENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~-~ka~  418 (420)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+. ++++
T Consensus        19 ~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~   62 (288)
T 2x9g_A           19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAV   62 (288)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHH
Confidence            4578899999996 7899999999999999999999997 5543

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=95.12  E-value=0.021  Score=52.98  Aligned_cols=42  Identities=17%  Similarity=0.145  Sum_probs=34.4

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ...-+|++||.|+ ||.|++++..|.+.|++|++++|+.++.+
T Consensus        18 ~~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~   60 (251)
T 3orf_A           18 GSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA   60 (251)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc
Confidence            3455899999996 78999999999999999999999977643

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=95.09  E-value=0.017  Score=53.76  Aligned_cols=41  Identities=32%  Similarity=0.486  Sum_probs=35.5

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeC-Chhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR-~~~ka  417 (420)
                      ..+++|++||.|+ ||.|++++..|.+.|++|+++.| +.++.
T Consensus        17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~   59 (274)
T 1ja9_A           17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAA   59 (274)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHH
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHH
Confidence            4578899999996 78999999999999999999999 66554

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=95.07  E-value=0.043  Score=55.71  Aligned_cols=41  Identities=37%  Similarity=0.418  Sum_probs=37.9

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      ..+.||+++|+|.|.+|++++..|..+|++|++++|++.++
T Consensus       207 ~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a  247 (436)
T 3h9u_A          207 VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINA  247 (436)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred             CcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhh
Confidence            46789999999999999999999999999999999998665

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=95.05  E-value=0.018  Score=54.57  Aligned_cols=42  Identities=24%  Similarity=0.268  Sum_probs=36.4

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.++.+
T Consensus        40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~   82 (285)
T 2c07_A           40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCD   82 (285)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence            4567899999986 78999999999999999999999877654

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=95.02  E-value=0.03  Score=53.48  Aligned_cols=37  Identities=24%  Similarity=0.444  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCC
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ..++||.+||.|+ ||.|++++..|++.|++|++++|+
T Consensus        24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   61 (299)
T 3t7c_A           24 GKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVC   61 (299)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            4578999999996 789999999999999999999987

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=95.01  E-value=0.012  Score=53.83  Aligned_cols=39  Identities=31%  Similarity=0.386  Sum_probs=35.1

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEE-EeCChhhhhc
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVI-ANRTYENLQR  419 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v-~nR~~~ka~~  419 (420)
                      -.++.|||+|.+|.+++..|.+.|.+|++ ++|+++++++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~   62 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSS   62 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHH
Confidence            35899999999999999999999998888 9999988764

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=94.98  E-value=0.019  Score=53.87  Aligned_cols=41  Identities=27%  Similarity=0.378  Sum_probs=35.7

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+
T Consensus        25 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~   66 (260)
T 3un1_A           25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA   66 (260)
T ss_dssp             HTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc
Confidence            356899999986 78999999999999999999999876543

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.98  E-value=0.02  Score=55.20  Aligned_cols=41  Identities=24%  Similarity=0.254  Sum_probs=37.1

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      .+.+++.|||+|-+|.+++..|.+.|.+|+++||++++++.
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~   59 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDE   59 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHH
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence            34578999999999999999999999999999999988764

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.97  E-value=0.014  Score=51.92  Aligned_cols=39  Identities=26%  Similarity=0.337  Sum_probs=34.7

Q ss_pred             CCCEEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviG-aGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++++|+| +||+|++++..+...|++|++++|+.++.+
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~   77 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKRE   77 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            578999999 599999999999999999999999987654

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=94.97  E-value=0.014  Score=54.24  Aligned_cols=41  Identities=15%  Similarity=0.137  Sum_probs=34.3

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCC---CeEEEEeCChhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKG---ARVVIANRTYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g---~~i~v~nR~~~ka  417 (420)
                      ..+++|++||.|+ ||.|++++..|.+.|   ++|++++|+.++.
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~   61 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQA   61 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSC
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhh
Confidence            5678999999986 889999999999999   8999999987654

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=94.97  E-value=0.019  Score=53.94  Aligned_cols=37  Identities=30%  Similarity=0.448  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCC
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ..++||+++|.|+ ||.|++++..|++.|++|+++.|+
T Consensus        25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~   62 (271)
T 4iin_A           25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRS   62 (271)
T ss_dssp             CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4678999999996 789999999999999999999994

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=94.92  E-value=0.15  Score=46.74  Aligned_cols=112  Identities=13%  Similarity=0.114  Sum_probs=67.4

Q ss_pred             HHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCC-CCCCCCCCHHHHHHHHHHHHHhCCcEE
Q 014691           37 KMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIW-EGGQYDGDENERVDVLRLAMELGADYI  115 (420)
Q Consensus        37 e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~-eGG~~~~~~~~~~~ll~~~~~~~~d~i  115 (420)
                      ++.+.++.+...|++.++++       . .+.++.+++..++|++--+|... +++..-....   +.++.+.+.|+|+|
T Consensus        37 ~~~~~a~~~~~~G~~~i~~~-------~-~~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~---~~i~~~~~~Gad~V  105 (234)
T 1yxy_A           37 IMPLMAKAAQEAGAVGIRAN-------S-VRDIKEIQAITDLPIIGIIKKDYPPQEPFITATM---TEVDQLAALNIAVI  105 (234)
T ss_dssp             SHHHHHHHHHHHTCSEEEEE-------S-HHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSH---HHHHHHHTTTCSEE
T ss_pred             hHHHHHHHHHHCCCcEeecC-------C-HHHHHHHHHhCCCCEEeeEcCCCCccccccCChH---HHHHHHHHcCCCEE
Confidence            44555555567799999875       1 24677777778999975555432 2333222222   33456778899999


Q ss_pred             EEEcccc--------cchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 014691          116 DVELQVA--------REFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIV  170 (420)
Q Consensus       116 DiEl~~~--------~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDiv  170 (420)
                      .+.....        .+.++.+... -++..++.+.|+    +  ++    ..++.+.|+|++
T Consensus       106 ~l~~~~~~~~~~~~~~~~i~~i~~~-~~~~~v~~~~~t----~--~e----a~~a~~~Gad~i  157 (234)
T 1yxy_A          106 AMDCTKRDRHDGLDIASFIRQVKEK-YPNQLLMADIST----F--DE----GLVAHQAGIDFV  157 (234)
T ss_dssp             EEECCSSCCTTCCCHHHHHHHHHHH-CTTCEEEEECSS----H--HH----HHHHHHTTCSEE
T ss_pred             EEcccccCCCCCccHHHHHHHHHHh-CCCCeEEEeCCC----H--HH----HHHHHHcCCCEE
Confidence            8866432        2344444432 136678887762    2  22    556667899988

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=94.87  E-value=0.02  Score=53.89  Aligned_cols=41  Identities=29%  Similarity=0.440  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeC-Chhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR-~~~ka  417 (420)
                      .++++|.+||.|+ ||.|++++..|++.|++|.+..| +.++.
T Consensus        24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~   66 (269)
T 4dmm_A           24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAA   66 (269)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHH
Confidence            3578999999996 88999999999999999988888 55443

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=94.86  E-value=0.038  Score=53.03  Aligned_cols=136  Identities=21%  Similarity=0.275  Sum_probs=82.9

Q ss_pred             eeecc-CccccccHHHHHHHHHHcCCCceeeccc--c--ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHH
Q 014691          257 GIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLL--V--DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAK  330 (420)
Q Consensus       257 ~v~G~-pv~hS~SP~ihn~~f~~~gl~~~y~~~~--~--~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~  330 (420)
                      -++|+ |-+++.--. -....++.|+......++  +  +++.+.++.+ .++.+.|+-|-.|.-.    ++|+   . +
T Consensus        39 ilvG~dpaS~~Yv~~-k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~----~id~---~-~  109 (288)
T 1b0a_A           39 VLVGSNPASQIYVAS-KRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPA----GIDN---V-K  109 (288)
T ss_dssp             EEESCCHHHHHHHHH-HHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCT----TSCH---H-H
T ss_pred             EEeCCChhHHHHHHH-HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCC----CCCH---H-H
Confidence            34553 333333322 244678899987655543  2  3677777777 5788999999999632    1221   1 1


Q ss_pred             HhcceeEEEEeccCC-------eE-EEE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHH
Q 014691          331 SIGAVNCIIRRQSDG-------KL-FGY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALA  397 (420)
Q Consensus       331 ~iGAvNTi~~~~~~g-------~l-~G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~  397 (420)
                      .+.+++--.=-  ||       ++ .|.    -.--.|++..|++.           +.+++||+++|||+|+ +|+.++
T Consensus       110 i~~~I~p~KDV--DG~~p~n~g~l~~g~~~~~PcTp~gi~~ll~~~-----------~i~l~gk~vvVIG~s~iVG~p~A  176 (288)
T 1b0a_A          110 VLERIHPDKDV--DGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERY-----------NIDTFGLNAVVIGASNIVGRPMS  176 (288)
T ss_dssp             HHTTSCTTTCT--TCCSHHHHHHHHTTCCSSCCHHHHHHHHHHHHT-----------TCCCTTCEEEEECCCTTTHHHHH
T ss_pred             HHhccCCccCc--ccCCccchhHHhCCCCCCCCCcHHHHHHHHHHc-----------CCCCCCCEEEEECCChHHHHHHH
Confidence            11222111000  11       11 010    01245667766653           2578999999999998 699999


Q ss_pred             HHHHhCCCeEEEEeCCh
Q 014691          398 YGAKAKGARVVIANRTY  414 (420)
Q Consensus       398 ~aL~~~g~~i~v~nR~~  414 (420)
                      .-|...|+.|++++++.
T Consensus       177 ~lL~~~gAtVtv~hs~t  193 (288)
T 1b0a_A          177 MELLLAGCTTTVTHRFT  193 (288)
T ss_dssp             HHHHTTTCEEEEECSSC
T ss_pred             HHHHHCCCeEEEEeCCc
Confidence            99999999999998754

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=94.83  E-value=0.039  Score=53.28  Aligned_cols=144  Identities=15%  Similarity=0.241  Sum_probs=83.5

Q ss_pred             Eeeec-cCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHH----HHhhhhcc
Q 014691          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEA----AVKCCDEV  325 (420)
Q Consensus       256 ~~v~G-~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~----i~~~~d~l  325 (420)
                      .-++| +|-+++.--.- ....++.|+......++-    +++.+.++.+ .++.+.|+-|-.|.-..    --..++.+
T Consensus        40 vilvG~dpaS~~Yv~~k-~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~~I  118 (301)
T 1a4i_A           40 ILQVGNRDDSNLYINVK-LKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAI  118 (301)
T ss_dssp             EEEESCCHHHHHHHHHH-HHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTS
T ss_pred             EEEeCCChhHHHHHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHhcc
Confidence            34556 34333333222 345788999876655543    3677777777 57889999999996321    11111111


Q ss_pred             cHHHHHh---cceeEEEEeccCCeE-EEE-ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHH
Q 014691          326 DTVAKSI---GAVNCIIRRQSDGKL-FGY-NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYG  399 (420)
Q Consensus       326 ~~~A~~i---GAvNTi~~~~~~g~l-~G~-NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~a  399 (420)
                      ++. |.+   .-.|.=..-  .|.. -++ -.--.|++..|++.           +.+++||+|+|||+|. +|+.++.-
T Consensus       119 ~p~-KDVDG~hp~N~G~l~--~g~~~~~~~PcTp~gi~~ll~~~-----------~i~l~gk~vvVIG~s~iVG~p~A~l  184 (301)
T 1a4i_A          119 APE-KDVDGLTSINAGRLA--RGDLNDCFIPCTPKGCLELIKET-----------GVPIAGRHAVVVGRSKIVGAPMHDL  184 (301)
T ss_dssp             CGG-GBTTCCSHHHHHHHH--TTCCSSCCCCHHHHHHHHHHHTT-----------TCCCTTCEEEEECCCTTTHHHHHHH
T ss_pred             CCC-CCccCCChhhHHHHh--cCCCCCCccCchHHHHHHHHHHc-----------CCCCCCCEEEEECCCchHHHHHHHH
Confidence            110 000   011100000  0100 000 01256777776553           2578999999999997 79999999


Q ss_pred             HHhCCCeEEEEeCCh
Q 014691          400 AKAKGARVVIANRTY  414 (420)
Q Consensus       400 L~~~g~~i~v~nR~~  414 (420)
                      |...|+.|++++++.
T Consensus       185 L~~~gAtVtv~hs~t  199 (301)
T 1a4i_A          185 LLWNNATVTTCHSKT  199 (301)
T ss_dssp             HHHTTCEEEEECTTC
T ss_pred             HHhCCCeEEEEECCc
Confidence            999999999998653

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=94.79  E-value=0.02  Score=55.65  Aligned_cols=40  Identities=25%  Similarity=0.326  Sum_probs=35.0

Q ss_pred             cCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEe-CChhhhh
Q 014691          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN-RTYENLQ  418 (420)
Q Consensus       379 ~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~n-R~~~ka~  418 (420)
                      +++|.+||.|+ ||.|++++..|++.|++|++++ |+.++++
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~   85 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEAN   85 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence            67899999986 7899999999999999999999 9987654

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=94.78  E-value=0.013  Score=54.95  Aligned_cols=40  Identities=35%  Similarity=0.386  Sum_probs=35.1

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      ++++|++||.|+ ||.|++++..|.+.|++|++++|+.++.
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~   71 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPAD   71 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            478899999986 7899999999999999999999986543

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=94.75  E-value=0.19  Score=45.13  Aligned_cols=131  Identities=16%  Similarity=0.113  Sum_probs=81.4

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDV  103 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~l  103 (420)
                      ++|+.+-..+.++.++.++.... ++|++|+-..++.... .+.++.+++.. +.|+++..-.. +     . .+.   .
T Consensus         2 ~li~a~d~~~~~~~~~~~~~~~~-~v~~iev~~~~~~~~g-~~~i~~l~~~~~~~~i~~~l~~~-d-----i-~~~---~   69 (207)
T 3ajx_A            2 KLQVAIDLLSTEAALELAGKVAE-YVDIIELGTPLIKAEG-LSVITAVKKAHPDKIVFADMKTM-D-----A-GEL---E   69 (207)
T ss_dssp             EEEEEECCSCHHHHHHHHHHHGG-GCSEEEECHHHHHHHC-THHHHHHHHHSTTSEEEEEEEEC-S-----C-HHH---H
T ss_pred             eEEEEeCCCCHHHHHHHHHHhhc-cCCEEEECcHHHHhhC-HHHHHHHHHhCCCCeEEEEEEec-C-----c-cHH---H
Confidence            57888999999999998888655 8999999766532111 23577777666 78988765532 1     1 233   3


Q ss_pred             HHHHHHhCCcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 014691          104 LRLAMELGADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA  173 (420)
Q Consensus       104 l~~~~~~~~d~iDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia  173 (420)
                      .+.+.+.|+|+|-+-....++..+.+.. .++.+.++-+|.|.. .+|  ++   ..+.+.+.|+|++|+.
T Consensus        70 ~~~a~~~Gad~v~vh~~~~~~~~~~~~~~~~~~g~~~gv~~~s~-~~p--~~---~~~~~~~~g~d~v~~~  134 (207)
T 3ajx_A           70 ADIAFKAGADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGI-EDK--AT---RAQEVRALGAKFVEMH  134 (207)
T ss_dssp             HHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTC-SSH--HH---HHHHHHHTTCSEEEEE
T ss_pred             HHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCceEEEEecC-CCh--HH---HHHHHHHhCCCEEEEE
Confidence            4677889999997765544332323321 122356666777722 122  23   2334445689999875

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=94.74  E-value=0.032  Score=57.65  Aligned_cols=41  Identities=32%  Similarity=0.423  Sum_probs=37.6

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+.|++|+|+|.|++|+.++..|..+|++|++++|++.+++
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~  311 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINAL  311 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            46799999999999999999999999999999999988753

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=94.74  E-value=0.039  Score=52.03  Aligned_cols=39  Identities=44%  Similarity=0.547  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      ..++||++||.|+ ||.|++++..|++.|++|++++|+..
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   66 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDG   66 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHH
Confidence            4678999999996 78999999999999999999998743

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=94.74  E-value=0.032  Score=54.54  Aligned_cols=41  Identities=34%  Similarity=0.458  Sum_probs=37.3

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      ..+.||++.|||.|.+|++++..|..+|++|+.+||+.++.
T Consensus       133 ~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~  173 (324)
T 3evt_A          133 STLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPA  173 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCC
T ss_pred             ccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchh
Confidence            46789999999999999999999999999999999986554

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=94.73  E-value=0.018  Score=54.40  Aligned_cols=41  Identities=32%  Similarity=0.422  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..++ |++||.|+ ||.|++++..|++.|++|++++|+.++.+
T Consensus        18 ~~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~   59 (272)
T 2nwq_A           18 SHMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQ   59 (272)
T ss_dssp             ---C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            3456 89999986 78999999999999999999999987654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.72  E-value=0.024  Score=57.04  Aligned_cols=40  Identities=25%  Similarity=0.240  Sum_probs=36.3

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      +.+.+|+|+|+|.+|..++..+..+|++|++++|+.++.+
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~  227 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKE  227 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence            5678999999999999999999999999999999987644

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=94.70  E-value=0.022  Score=52.14  Aligned_cols=41  Identities=15%  Similarity=0.198  Sum_probs=35.2

Q ss_pred             cCCCEEEEEcc-chHHHHHHHHHHhCC-CeEEEEeCChhhhhc
Q 014691          379 LAGKLFVVIGA-GGAGKALAYGAKAKG-ARVVIANRTYENLQR  419 (420)
Q Consensus       379 ~~~k~vlviGa-GGaara~~~aL~~~g-~~i~v~nR~~~ka~~  419 (420)
                      ...|++||.|+ |+.|++++..|.+.| ++|+++.|+.+++++
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~   63 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHK   63 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCS
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcc
Confidence            34679999995 889999999999999 699999999887654

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=94.70  E-value=0.036  Score=53.03  Aligned_cols=137  Identities=20%  Similarity=0.293  Sum_probs=82.8

Q ss_pred             eeecc-CccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHH
Q 014691          257 GIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAK  330 (420)
Q Consensus       257 ~v~G~-pv~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~  330 (420)
                      -++|+ |-+++.-- .-....++.|+......++-    +++.+.++.+ .++.+.|+-|-.|.-.    ++|+   . +
T Consensus        38 ilvg~dpas~~Yv~-~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~i~~lN~D~~v~GIlvqlPlP~----~id~---~-~  108 (281)
T 2c2x_A           38 ILVGDDPGSQAYVR-GKHADCAKVGITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPK----HLDE---N-A  108 (281)
T ss_dssp             EEESCCHHHHHHHH-HHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCT----TSCH---H-H
T ss_pred             EEeCCChhhHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCC----CCCH---H-H
Confidence            34553 43333332 22446788999877655542    3677777777 5788999999999632    2221   0 1


Q ss_pred             HhcceeEEEEeccCC-------eE-EE---E-ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHH
Q 014691          331 SIGAVNCIIRRQSDG-------KL-FG---Y-NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALA  397 (420)
Q Consensus       331 ~iGAvNTi~~~~~~g-------~l-~G---~-NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~  397 (420)
                      .+.+++--.=-  ||       ++ .|   + -.--.|++..|++.           +.+++||+++|||+|. +|+.++
T Consensus       109 i~~~I~p~KDV--DG~~p~n~g~l~~g~~~~~PcTp~gi~~ll~~~-----------~i~l~gk~vvVvG~s~iVG~p~A  175 (281)
T 2c2x_A          109 ALERVDPAKDA--DGLHPTNLGRLVLGTPAPLPCTPRGIVHLLRRY-----------DISIAGAHVVVIGRGVTVGRPLG  175 (281)
T ss_dssp             HHHHSCGGGBT--TSCCHHHHHHHHHTCCCCCCHHHHHHHHHHHHT-----------TCCCTTCEEEEECCCTTTHHHHH
T ss_pred             HHhhcCccCCc--cCCChhhHHHHhCCCCCCCCChHHHHHHHHHHc-----------CCCCCCCEEEEECCCcHHHHHHH
Confidence            11111111000  11       11 01   0 01245666666553           2578999999999998 599999


Q ss_pred             HHHHhC--CCeEEEEeCChh
Q 014691          398 YGAKAK--GARVVIANRTYE  415 (420)
Q Consensus       398 ~aL~~~--g~~i~v~nR~~~  415 (420)
                      ..|...  |+.|++++|+..
T Consensus       176 ~lL~~~g~~atVtv~h~~t~  195 (281)
T 2c2x_A          176 LLLTRRSENATVTLCHTGTR  195 (281)
T ss_dssp             HHHTSTTTCCEEEEECTTCS
T ss_pred             HHHhcCCCCCEEEEEECchh
Confidence            999999  789999998643

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=94.70  E-value=0.033  Score=52.74  Aligned_cols=42  Identities=24%  Similarity=0.321  Sum_probs=35.2

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeC-Chhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR-~~~ka~  418 (420)
                      ..+++|.+||.|+ ||.|++++..|++.|++|++++| +.++++
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~   68 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVA   68 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHH
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHH
Confidence            3567899999996 78999999999999999999985 655443

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=94.69  E-value=0.017  Score=55.12  Aligned_cols=42  Identities=33%  Similarity=0.491  Sum_probs=36.7

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCC---eEEEEeCChhhhhc
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGA---RVVIANRTYENLQR  419 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~---~i~v~nR~~~ka~~  419 (420)
                      .++||++||.|+ ||.|++++..|++.|+   +|.+++|+.++.++
T Consensus        30 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~   75 (287)
T 3rku_A           30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEE   75 (287)
T ss_dssp             HHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             hcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHH
Confidence            467999999996 7899999999999887   99999999887653

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=94.66  E-value=0.03  Score=52.75  Aligned_cols=41  Identities=34%  Similarity=0.397  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCC-hhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT-YENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~-~~ka  417 (420)
                      ..++||++||.|+ ||.|++++..|++.|++|.++.|+ .+++
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~   69 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERA   69 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHH
Confidence            3578999999996 789999999999999998888554 4443

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.66  E-value=0.027  Score=55.80  Aligned_cols=41  Identities=17%  Similarity=0.272  Sum_probs=36.4

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      .+++++.|||.|-+|++++..|.+.|.+|+++||+.++++.
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~   60 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQA   60 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence            45679999999999999999999999999999999988764

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=94.53  E-value=0.034  Score=52.45  Aligned_cols=40  Identities=28%  Similarity=0.532  Sum_probs=34.9

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.++
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   65 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTE   65 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence            4568899999986 789999999999999999999998643

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=94.53  E-value=0.026  Score=54.91  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=32.3

Q ss_pred             CCCEEEEEccchHHHHHHHHHHh-CCC-eEEEEeCChhhhhc
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYENLQR  419 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~-~g~-~i~v~nR~~~ka~~  419 (420)
                      ..++++|||+|++|++.+.+|.. .++ +|+|+||+  ++++
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~  159 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPE  159 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHH
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHH
Confidence            35799999999999999999976 466 89999999  5543

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=94.52  E-value=0.028  Score=54.94  Aligned_cols=40  Identities=23%  Similarity=0.262  Sum_probs=36.3

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++
T Consensus       151 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~  190 (330)
T 2gcg_A          151 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPR  190 (330)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCC
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence            4678999999999999999999999999999999997654

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=94.51  E-value=0.034  Score=53.97  Aligned_cols=40  Identities=38%  Similarity=0.417  Sum_probs=36.8

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.|+++.|||.|.+|++++..|..+|++|+++||+.++
T Consensus       140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~  179 (311)
T 2cuk_A          140 LDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKP  179 (311)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence            4678999999999999999999999999999999998765

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=94.48  E-value=0.03  Score=52.93  Aligned_cols=38  Identities=21%  Similarity=0.279  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcc---chHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          378 ALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       378 ~~~~k~vlviGa---GGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      .++||++||.|+   ||.|++++..|++.|++|++++|+.+
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~   58 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK   58 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            356899999997   59999999999999999999999874

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=94.47  E-value=0.39  Score=43.71  Aligned_cols=130  Identities=15%  Similarity=0.131  Sum_probs=78.0

Q ss_pred             CcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHH
Q 014691           23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERV  101 (420)
Q Consensus        23 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~  101 (420)
                      .+++++.+-.+++++.++.++.. ..++|++|+-+-+.-... .+.++.+++. .+.|+++-+-.- +      ..+.  
T Consensus         6 ~~~lilalD~~~~~~~~~~~~~~-~~~vd~ie~g~~~~~~~G-~~~i~~lr~~~~~~~i~ld~~l~-d------~p~~--   74 (218)
T 3jr2_A            6 KPMIQIALDQTNLTDAVAVASNV-ASYVDVIEVGTILAFAEG-MKAVSTLRHNHPNHILVCDMKTT-D------GGAI--   74 (218)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHH-GGGCSEEEECHHHHHHHT-THHHHHHHHHCTTSEEEEEEEEC-S------CHHH--
T ss_pred             CCCeEEEeCCCCHHHHHHHHHHh-cCCceEEEeCcHHHHhcC-HHHHHHHHHhCCCCcEEEEEeec-c------cHHH--
Confidence            57899999999999999999874 568999997654321111 2357777766 367887765432 1      1222  


Q ss_pred             HHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEE-EcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          102 DVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIV-SSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       102 ~ll~~~~~~~~d~iDiEl~~~~~~~~~l~-~~~~~~~kiI~-S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                       ..+.+.+.|+|+|-+-....++.++++. ..++.+.+.++ -.-.  .||  +++.    ++.+.|+|.+++
T Consensus        75 -~~~~~~~aGad~i~vh~~~~~~~~~~~~~~~~~~g~~~~~d~l~~--~T~--~~~~----~~~~~g~d~v~~  138 (218)
T 3jr2_A           75 -LSRMAFEAGADWITVSAAAHIATIAACKKVADELNGEIQIEIYGN--WTM--QDAK----AWVDLGITQAIY  138 (218)
T ss_dssp             -HHHHHHHHTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECCSS--CCH--HHHH----HHHHTTCCEEEE
T ss_pred             -HHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCccceeeeec--CCH--HHHH----HHHHcCccceee
Confidence             4477788999999887654433333322 12233556653 1110  132  3333    334458998876

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=94.44  E-value=0.04  Score=53.98  Aligned_cols=40  Identities=33%  Similarity=0.427  Sum_probs=36.8

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++
T Consensus       146 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~  185 (334)
T 2dbq_A          146 YDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE  185 (334)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             cCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch
Confidence            4678999999999999999999999999999999998765

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=94.41  E-value=3  Score=40.69  Aligned_cols=200  Identities=14%  Similarity=0.112  Sum_probs=120.0

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEE-ecCCC---------CCCchhHHHHHHhhC-CCcEEE-EeccCCCCCCCCCCHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIR-LDGLK---------NFNPRENIKTLIKES-PVPTLF-TYRPIWEGGQYDGDENERV  101 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElR-lD~l~---------~~~~~~~l~~l~~~~-~~PiI~-T~R~~~eGG~~~~~~~~~~  101 (420)
                      +.++.++-++.+.+.|+|.||+= .|-|+         ..++.+.++.+++.. +.|+.+ +++.     .  ..    .
T Consensus        28 ~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~-----~--~~----~   96 (345)
T 1nvm_A           28 TLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPG-----I--GS----V   96 (345)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBT-----T--BC----H
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCEEEEEecCC-----c--cc----H
Confidence            45555665666667899999992 11111         113345566666543 455543 3441     1  11    2


Q ss_pred             HHHHHHHHhCCcEEEEEcccc--cchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--C
Q 014691          102 DVLRLAMELGADYIDVELQVA--REFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA--L  177 (420)
Q Consensus       102 ~ll~~~~~~~~d~iDiEl~~~--~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~--~  177 (420)
                      +.++.+.+.|++.+-|=....  +...+.+...++.+..++.+.-+...+ +.+.+.++.+.+.++|++++-++-+.  .
T Consensus        97 ~~i~~a~~aGvd~v~I~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~a~~~-~~e~~~~ia~~~~~~Ga~~i~l~DT~G~~  175 (345)
T 1nvm_A           97 HDLKNAYQAGARVVRVATHCTEADVSKQHIEYARNLGMDTVGFLMMSHMI-PAEKLAEQGKLMESYGATCIYMADSGGAM  175 (345)
T ss_dssp             HHHHHHHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEEESTTSS-CHHHHHHHHHHHHHHTCSEEEEECTTCCC
T ss_pred             HHHHHHHhCCcCEEEEEEeccHHHHHHHHHHHHHHCCCEEEEEEEeCCCC-CHHHHHHHHHHHHHCCCCEEEECCCcCcc
Confidence            467788889999887754332  222222222344577888887554333 45789999999999999999988544  4


Q ss_pred             CHHHHHHHHHHhcc-C--CCCEEEE--ecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691          178 DITDVARVFQITVH-S--QVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (420)
Q Consensus       178 s~~D~~~ll~~~~~-~--~~p~I~~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~  246 (420)
                      ++.++.++++.+.. .  +.|+-..  +.--+|...-+..-..|....=+++..- .-..||++++++.-.++.
T Consensus       176 ~P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~G~avAn~laA~~aGa~~vd~tv~Gl-G~~aGN~~le~lv~~L~~  248 (345)
T 1nvm_A          176 SMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLAGM-GAGAGNAPLEVFIAVAER  248 (345)
T ss_dssp             CHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGC-SSTTCBCBHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCceEEEEECCCccHHHHHHHHHHHcCCCEEEecchhc-cCCccCcCHHHHHHHHHh
Confidence            68999888877654 3  4555432  2333444555555555644433444431 235799999988766653

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=94.30  E-value=0.027  Score=54.41  Aligned_cols=37  Identities=41%  Similarity=0.686  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCC
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ..++||.+||.|+ ||.|++++..|++.|++|++++|+
T Consensus        23 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~   60 (322)
T 3qlj_A           23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIG   60 (322)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCc
Confidence            3478999999986 789999999999999999999987

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=94.29  E-value=0.041  Score=52.44  Aligned_cols=38  Identities=21%  Similarity=0.302  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcc-ch--HHHHHHHHHHhCCCeEEEEeCChh
Q 014691          378 ALAGKLFVVIGA-GG--AGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       378 ~~~~k~vlviGa-GG--aara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      .++||++||.|+ |+  .|++++..|++.|++|.+++|+.+
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~   68 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDA   68 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            478999999997 34  999999999999999999999854

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=94.29  E-value=0.034  Score=54.57  Aligned_cols=41  Identities=27%  Similarity=0.303  Sum_probs=37.2

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++.
T Consensus       160 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~  200 (333)
T 3ba1_A          160 TKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN  200 (333)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTT
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhc
Confidence            46789999999999999999999999999999999987653

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=94.26  E-value=0.048  Score=52.91  Aligned_cols=40  Identities=28%  Similarity=0.314  Sum_probs=36.8

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.|+++.|||.|.+|++++..|..+|++|++++|+.++
T Consensus       138 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~  177 (313)
T 2ekl_A          138 LELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIR  177 (313)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcch
Confidence            4678999999999999999999999999999999998765

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=94.25  E-value=0.027  Score=55.54  Aligned_cols=35  Identities=17%  Similarity=0.326  Sum_probs=31.7

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeC
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR  412 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR  412 (420)
                      .+++++|+|+|+||.|..++..|+..|+ +|+|++.
T Consensus        33 ~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~   68 (346)
T 1y8q_A           33 RLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDH   68 (346)
T ss_dssp             HHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             HHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence            3567899999999999999999999999 9999954

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.25  E-value=0.043  Score=53.06  Aligned_cols=39  Identities=33%  Similarity=0.428  Sum_probs=35.3

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++++|.|+ ||+|++++..+...|++|++++|+.++.+
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~  184 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIA  184 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            5789999998 99999999999999999999999887754

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.24  E-value=0.17  Score=50.65  Aligned_cols=107  Identities=17%  Similarity=0.244  Sum_probs=68.5

Q ss_pred             CCCceeeccccccHHHHHHHhc--CCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCCeEEEEecCHH--
Q 014691          280 GFNGVFVHLLVDDIAKFFQTYS--SNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYV--  355 (420)
Q Consensus       280 gl~~~y~~~~~~~l~~~~~~~~--~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g~l~G~NTD~~--  355 (420)
                      |+|..=..+++.+.++|++.++  .+.|.|++.--=-....+..++++.+.      .          .+-=+|-|--  
T Consensus       104 gid~~pi~Ldv~~~dEfv~~v~~~~p~F~~I~lED~~~p~~f~il~~~r~~------~----------~ipvf~DDiqGT  167 (398)
T 2a9f_A          104 GVDAIPIVLDTKDTEEIISIVKALAPTFGGINLEDISAPRCFEIEQRLIKE------C----------HIPVFHDDQHGT  167 (398)
T ss_dssp             SCEEEEEECCCCCHHHHHHHHHHHGGGCSEEEECSCCTTHHHHHHHHHHHH------C----------SSCEEEHHHHHH
T ss_pred             CCceeeeEeCCCCHHHHHHHHHHcCCceeEeccccCCChHHHHHHHHhhhc------C----------CcceecchhhhH
Confidence            5664434455667888877764  478999887431123344444443332      1          1223444533  


Q ss_pred             ------HHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          356 ------GAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       356 ------G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                            |++++++  +.         +..++..+++|+|||-+|.+++.-|..+|+ +|++++|+
T Consensus       168 a~V~lAall~al~--l~---------g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          168 AIVVLAAIFNSLK--LL---------KKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             HHHHHHHHHHHHH--TT---------TCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHHHHHHHH--Hh---------CCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence                  2333433  21         246777899999999999999999999999 99999986

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=94.22  E-value=0.039  Score=52.61  Aligned_cols=36  Identities=31%  Similarity=0.394  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCC
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      .++||++||.|+ ||.|++++..|++.|++|.++.|+
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            568999999996 789999999999999999999887

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=94.11  E-value=0.035  Score=53.34  Aligned_cols=38  Identities=26%  Similarity=0.274  Sum_probs=34.8

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      +++.|||+|.+|++++..|...|.+|++++|+.++++.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~   68 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDL   68 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHH
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence            57999999999999999999999999999999888753

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=94.11  E-value=0.044  Score=53.88  Aligned_cols=40  Identities=25%  Similarity=0.313  Sum_probs=35.2

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh---hhhh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY---ENLQ  418 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~---~ka~  418 (420)
                      ++|++|||+|+||+|.+++..+...|++|++++|+.   ++.+
T Consensus       179 ~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  221 (366)
T 2cdc_A          179 LNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQT  221 (366)
T ss_dssp             STTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHH
Confidence            348999999999999999999999999999999987   6643

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=94.08  E-value=0.043  Score=53.40  Aligned_cols=41  Identities=20%  Similarity=0.131  Sum_probs=36.9

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      ..+.||++.|||.|.+|++++..|..+|++|+.++|+.++.
T Consensus       135 ~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~  175 (315)
T 3pp8_A          135 YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSW  175 (315)
T ss_dssp             CCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCC
T ss_pred             CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhh
Confidence            35779999999999999999999999999999999987643

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=94.05  E-value=0.04  Score=53.14  Aligned_cols=36  Identities=31%  Similarity=0.460  Sum_probs=32.6

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCC
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      .++||.+||.|+ ||.|++++..|++.|++|++++|+
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~   79 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLC   79 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence            467899999986 789999999999999999999876

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=94.01  E-value=0.056  Score=52.29  Aligned_cols=40  Identities=28%  Similarity=0.333  Sum_probs=36.8

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.|+++.|||.|.+|++++..|..+|++|++++|+.++
T Consensus       138 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~  177 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE  177 (307)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             cccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh
Confidence            4678999999999999999999999999999999998754

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=94.00  E-value=0.048  Score=56.09  Aligned_cols=41  Identities=34%  Similarity=0.408  Sum_probs=37.9

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      ..+.||++.|+|.|.+|++++..|..+|++|++++|+..++
T Consensus       253 ~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~  293 (479)
T 1v8b_A          253 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICA  293 (479)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred             cccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhH
Confidence            46789999999999999999999999999999999998764

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=93.97  E-value=0.052  Score=53.46  Aligned_cols=40  Identities=20%  Similarity=0.282  Sum_probs=36.4

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHH-hCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAK-AKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~-~~g~~i~v~nR~~~k  416 (420)
                      ..+.|+++.|||.|.+|++++..|. .+|++|++++|+.++
T Consensus       159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~  199 (348)
T 2w2k_A          159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPAD  199 (348)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCC
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcc
Confidence            4678999999999999999999999 999999999998654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=93.92  E-value=0.057  Score=52.34  Aligned_cols=38  Identities=16%  Similarity=0.245  Sum_probs=34.8

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhhhh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYENLQ  418 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~--~i~v~nR~~~ka~  418 (420)
                      .+++.|||+|.+|.+++..|...|.  +|++++|++++++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~   72 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESIS   72 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHH
Confidence            4789999999999999999999998  9999999987754

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=93.91  E-value=0.039  Score=51.90  Aligned_cols=40  Identities=30%  Similarity=0.356  Sum_probs=31.7

Q ss_pred             cCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEE-eCChhhhh
Q 014691          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYENLQ  418 (420)
Q Consensus       379 ~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~-nR~~~ka~  418 (420)
                      +++|.+||.|+ ||.|++++..|++.|++|.+. .|+.++++
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~   66 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAE   66 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence            46899999986 789999999999999988776 55655443

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=93.91  E-value=0.56  Score=43.20  Aligned_cols=108  Identities=13%  Similarity=0.189  Sum_probs=69.1

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEe-cC--CCCCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRL-DG--LKNFNP-RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER  100 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRl-D~--l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~  100 (420)
                      +|+-+|..-|..++.++++.+.+.|+|++|+|+ |-  .++... .+.++.+++.++.|+.+.+=.. +       ++.|
T Consensus         6 ~i~psila~D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~-d-------p~~~   77 (230)
T 1tqj_A            6 VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIV-E-------PEKY   77 (230)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESS-S-------GGGT
T ss_pred             EEEEEeeecCHhHHHHHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEcc-C-------HHHH
Confidence            589999999999999999998888999999998 21  122221 2457777766778888776642 1       1233


Q ss_pred             HHHHHHHHHhCCcEEEEEcc--cccchhHHHhhcCCCCcEEEEEc
Q 014691          101 VDVLRLAMELGADYIDVELQ--VAREFNDSIRGKKPEKCKVIVSS  143 (420)
Q Consensus       101 ~~ll~~~~~~~~d~iDiEl~--~~~~~~~~l~~~~~~~~kiI~S~  143 (420)
                         ++.+++.|+|+|-+=..  ..+...+.+...+..+.++.+|.
T Consensus        78 ---i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~~g~~~gv~~  119 (230)
T 1tqj_A           78 ---VEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVL  119 (230)
T ss_dssp             ---HHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEE
T ss_pred             ---HHHHHHcCCCEEEECcccccchhHHHHHHHHHHcCCcEEEEE
Confidence               35667778988866544  22221112212223466666666

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=93.90  E-value=0.062  Score=55.45  Aligned_cols=41  Identities=32%  Similarity=0.357  Sum_probs=37.9

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      ..+.||++.|+|.|.+|++++..|..+|++|++++|+..++
T Consensus       273 ~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~  313 (494)
T 3d64_A          273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICA  313 (494)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHH
T ss_pred             cccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhH
Confidence            45789999999999999999999999999999999998764

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=93.89  E-value=0.52  Score=42.24  Aligned_cols=130  Identities=18%  Similarity=0.197  Sum_probs=82.9

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecC-CCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHH
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDG-LKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVD  102 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~-l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~  102 (420)
                      ++++.+-.+++++.++.++.+. .++|++|+=.-+ +.. . .+.++.+++. .+.|+.++.-.. +      .. ++  
T Consensus         2 ~li~a~D~~~~~~~~~~~~~~~-~~~diie~G~p~~~~~-g-~~~i~~ir~~~~~~~i~~~~~~~-~------~~-~~--   68 (211)
T 3f4w_A            2 KLQLALDELTLPEAMVFMDKVV-DDVDIIEVGTPFLIRE-G-VNAIKAIKEKYPHKEVLADAKIM-D------GG-HF--   68 (211)
T ss_dssp             EEEEEECSCCHHHHHHHHHHHG-GGCSEEEECHHHHHHH-T-THHHHHHHHHCTTSEEEEEEEEC-S------CH-HH--
T ss_pred             cEEEEeCCCCHHHHHHHHHHhh-cCccEEEeCcHHHHhc-c-HHHHHHHHHhCCCCEEEEEEEec-c------ch-HH--
Confidence            5788899999999999888764 689999986533 111 1 2457777766 478987664431 1      11 22  


Q ss_pred             HHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 014691          103 VLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA  173 (420)
Q Consensus       103 ll~~~~~~~~d~iDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia  173 (420)
                      +.+.+.+.|+|+|-+=....++.+..+. ..++.+.++++..++    |.  +..+.++++.+.|+|++.+-
T Consensus        69 ~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~----~~--t~~~~~~~~~~~g~d~i~v~  134 (211)
T 3f4w_A           69 ESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMIC----VD--DLPARVRLLEEAGADMLAVH  134 (211)
T ss_dssp             HHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTT----CS--SHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecC----CC--CHHHHHHHHHHcCCCEEEEc
Confidence            3678888999999886544322223332 123347788876442    21  23455677778899998653

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=93.88  E-value=0.045  Score=53.59  Aligned_cols=40  Identities=28%  Similarity=0.354  Sum_probs=36.5

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++
T Consensus       142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~  181 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV  181 (333)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH
T ss_pred             CCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch
Confidence            3578999999999999999999999999999999998764

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=93.86  E-value=0.043  Score=53.14  Aligned_cols=39  Identities=33%  Similarity=0.405  Sum_probs=35.4

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+ ||+|.+++..+...|++|+++.|+.++.+
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~  188 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCR  188 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            5889999998 99999999999999999999999987764

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=93.86  E-value=0.046  Score=52.56  Aligned_cols=40  Identities=38%  Similarity=0.494  Sum_probs=36.6

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      .+.|+++.|||.|.+|++++..|..+|++|+.++|+.++.
T Consensus       119 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~  158 (290)
T 3gvx_A          119 LLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQ  158 (290)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCT
T ss_pred             eeecchheeeccCchhHHHHHHHHhhCcEEEEEecccccc
Confidence            4789999999999999999999999999999999987654

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=93.84  E-value=0.059  Score=53.34  Aligned_cols=35  Identities=26%  Similarity=0.242  Sum_probs=31.7

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      +..+|+|||+|.+|.+++++|++.|.+|+|+.|..
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~   56 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVK   56 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            45689999999999999999999999999999875

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=93.84  E-value=0.047  Score=53.41  Aligned_cols=40  Identities=20%  Similarity=0.145  Sum_probs=36.5

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.|+++.|||.|.+|++++..|..+|++|++++|+.++
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~  181 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIK  181 (331)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccH
Confidence            4578999999999999999999999999999999998654

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=93.82  E-value=0.051  Score=52.93  Aligned_cols=42  Identities=17%  Similarity=0.327  Sum_probs=36.6

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhC-CC-eEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAK-GA-RVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~-g~-~i~v~nR~~~ka~  418 (420)
                      ..+++|++||.|+ |+.|++++..|.+. |+ +|++++|+..+.+
T Consensus        17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~   61 (344)
T 2gn4_A           17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQS   61 (344)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHH
T ss_pred             HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHH
Confidence            3467899999996 88999999999998 98 9999999977653

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=93.76  E-value=0.057  Score=52.83  Aligned_cols=40  Identities=18%  Similarity=0.264  Sum_probs=36.6

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.|+++.|||.|.+|++++..|..+|++|++++|+.++
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~  181 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNP  181 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch
Confidence            4678999999999999999999999999999999998754

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=93.75  E-value=0.064  Score=52.74  Aligned_cols=40  Identities=38%  Similarity=0.391  Sum_probs=36.9

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.||++.|||.|.+|++++..|..+|++|+++||+.++
T Consensus       167 ~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  206 (340)
T 4dgs_A          167 HSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS  206 (340)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc
Confidence            4678999999999999999999999999999999998765

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=93.74  E-value=0.064  Score=52.39  Aligned_cols=40  Identities=25%  Similarity=0.484  Sum_probs=36.6

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.|+++.|||.|.+|++++..|..+|++|+.+||+.+.
T Consensus       136 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  175 (324)
T 3hg7_A          136 QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRE  175 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHH
Confidence            4678999999999999999999999999999999998643

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=93.73  E-value=0.054  Score=51.06  Aligned_cols=37  Identities=22%  Similarity=0.278  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcc---chHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          378 ALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGa---GGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+++|++||.|+   +|.|++++..|++.|++|++++|+.
T Consensus        23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            467899999995   3599999999999999999999986

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=93.72  E-value=1.3  Score=40.27  Aligned_cols=88  Identities=14%  Similarity=0.211  Sum_probs=57.8

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEe-c--CCCCCC-chhHHHHHHhhCCCcEEEEeccCCCCCCCCCCH
Q 014691           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRL-D--GLKNFN-PRENIKTLIKESPVPTLFTYRPIWEGGQYDGDE   97 (420)
Q Consensus        22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRl-D--~l~~~~-~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~   97 (420)
                      ...+|+-.|..-+..++.+.++.+.+.|+|++|+|+ |  +.++.. ..+.++.+++..+.|+.+.+=-       . +.
T Consensus         9 ~~~~i~p~i~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~~~~~~v~l~v-------n-d~   80 (230)
T 1rpx_A            9 SDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMI-------V-EP   80 (230)
T ss_dssp             TSCEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEES-------S-SH
T ss_pred             CceEEEEEeecCCHHHHHHHHHHHHHCCCCEEEEeeccCCcccccccCHHHHHHHHhccCCcEEEEEEe-------c-CH
Confidence            334588888999999999999888888999999997 4  222221 1345666766566787766521       1 23


Q ss_pred             HHHHHHHHHHHHhCCcEEEEEcc
Q 014691           98 NERVDVLRLAMELGADYIDVELQ  120 (420)
Q Consensus        98 ~~~~~ll~~~~~~~~d~iDiEl~  120 (420)
                      +   +.++.+.+.|+|+|-+-..
T Consensus        81 ~---~~v~~~~~~Gad~v~vh~~  100 (230)
T 1rpx_A           81 D---QRVPDFIKAGADIVSVHCE  100 (230)
T ss_dssp             H---HHHHHHHHTTCSEEEEECS
T ss_pred             H---HHHHHHHHcCCCEEEEEec
Confidence            3   2444556678888755433

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=93.72  E-value=0.067  Score=52.00  Aligned_cols=39  Identities=33%  Similarity=0.451  Sum_probs=35.2

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+||+|.+++..+...|++|+.+.|+.++.+
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~  202 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLE  202 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            478999999999999999999999999999999987754

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=93.65  E-value=0.078  Score=51.64  Aligned_cols=39  Identities=33%  Similarity=0.360  Sum_probs=34.7

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+ ||+|++++..+...|++|+++.|+.++.+
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~  208 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEE  208 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHH
Confidence            4789999999 89999999999999999999999877653

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=93.60  E-value=0.046  Score=51.19  Aligned_cols=40  Identities=25%  Similarity=0.279  Sum_probs=33.2

Q ss_pred             cCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEE-eCChhhhh
Q 014691          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYENLQ  418 (420)
Q Consensus       379 ~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~-nR~~~ka~  418 (420)
                      .++|.+||.|+ ||.|++++..|++.|++|.+. .|+.++++
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~   65 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAAD   65 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHH
Confidence            35788999986 889999999999999988776 78876654

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=93.55  E-value=0.046  Score=54.03  Aligned_cols=39  Identities=26%  Similarity=0.374  Sum_probs=35.2

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      ..++.|||+|.+|.+++..|++.|.+|++++|++++++.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~   67 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDE   67 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence            357999999999999999999999999999999887654

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.55  E-value=0.052  Score=52.67  Aligned_cols=39  Identities=28%  Similarity=0.324  Sum_probs=35.0

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+ ||+|.+++..+...|++|+++.|+.++.+
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~  194 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVD  194 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            5789999997 99999999999999999999999987754

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=93.54  E-value=0.073  Score=51.78  Aligned_cols=40  Identities=23%  Similarity=0.246  Sum_probs=36.3

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeC-Chhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANR-TYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR-~~~k  416 (420)
                      ..+.|+++.|||.|.+|++++..|..+|++|++++| +.++
T Consensus       142 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~  182 (320)
T 1gdh_A          142 EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS  182 (320)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCH
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcCh
Confidence            467899999999999999999999999999999999 7644

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=93.53  E-value=1.7  Score=39.77  Aligned_cols=143  Identities=20%  Similarity=0.211  Sum_probs=88.5

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 014691           33 ESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA  112 (420)
Q Consensus        33 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~  112 (420)
                      .+.+++.+-++++.+.+++.|=+.--+.      ......++..+++ +.|+=.-..|-   .+.+.+..-.+.|++.|+
T Consensus        16 ~t~~~i~~l~~~a~~~~~~aVcv~p~~v------~~~~~~l~~~~v~-v~~vigFP~G~---~~~~~k~~e~~~Ai~~GA   85 (220)
T 1ub3_A           16 ATLEEVAKAAEEALEYGFYGLCIPPSYV------AWVRARYPHAPFR-LVTVVGFPLGY---QEKEVKALEAALACARGA   85 (220)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEECCGGGH------HHHHHHCTTCSSE-EEEEESTTTCC---SCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEECHHHH------HHHHHHhCCCCce-EEEEecCCCCC---CchHHHHHHHHHHHHcCC
Confidence            4678888888888887777764322211      1222233333444 44443333332   244666667789999999


Q ss_pred             cEEEEEcccc-------cchhHHH---hh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe----ecC
Q 014691          113 DYIDVELQVA-------REFNDSI---RG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT----TAL  177 (420)
Q Consensus       113 d~iDiEl~~~-------~~~~~~l---~~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~----~~~  177 (420)
                      |-||+=++..       +...+++   .. .+....|+|+-.-.    ++.+++....+-..+.|||+||--+    -.-
T Consensus        86 devd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~----l~~e~i~~a~~ia~eaGADfVKTsTGf~~~ga  161 (220)
T 1ub3_A           86 DEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGY----FSPEEIARLAEAAIRGGADFLKTSTGFGPRGA  161 (220)
T ss_dssp             SEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGG----SCHHHHHHHHHHHHHHTCSEEECCCSSSSCCC
T ss_pred             CEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCC----CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCC
Confidence            9999977643       1122333   22 23457888875433    3567788888888899999999884    224


Q ss_pred             CHHHHHHHHHHh
Q 014691          178 DITDVARVFQIT  189 (420)
Q Consensus       178 s~~D~~~ll~~~  189 (420)
                      +.+|+..+.+..
T Consensus       162 t~~dv~~m~~~v  173 (220)
T 1ub3_A          162 SLEDVALLVRVA  173 (220)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhh
Confidence            778887766553

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=93.46  E-value=0.8  Score=43.71  Aligned_cols=146  Identities=18%  Similarity=0.220  Sum_probs=89.0

Q ss_pred             ecCCCHHHHHHHHHhhhhcCCCEEEEEecCC-CCCCch-hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHH---HHHHH
Q 014691           30 IMGESVDKMVVDMGKANASGADLVEIRLDGL-KNFNPR-ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENE---RVDVL  104 (420)
Q Consensus        30 l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l-~~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~---~~~ll  104 (420)
                      +...+++++..    +.+.|||.|||+-++. ..+.|. ..++.+++..++|+-+=+|..  ||-|-.+++|   ..+-+
T Consensus        44 vc~~s~~~a~~----A~~gGAdRIELc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPR--gGdF~Ys~~E~~~M~~dI  117 (287)
T 3iwp_A           44 VCVDSVESAVN----AERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPR--GGDFLYSDREIEVMKADI  117 (287)
T ss_dssp             EEESSHHHHHH----HHHHTCSEEEECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSS--SSCSCCCHHHHHHHHHHH
T ss_pred             EEeCCHHHHHH----HHHhCCCEEEECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecC--CCCcccCHHHHHHHHHHH
Confidence            33677776654    4467999999995543 233332 356666666789999999964  5656666533   34456


Q ss_pred             HHHHHhCCcEEEEEc-----ccccchhHHHhhcCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCC
Q 014691          105 RLAMELGADYIDVEL-----QVAREFNDSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTALD  178 (420)
Q Consensus       105 ~~~~~~~~d~iDiEl-----~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s  178 (420)
                      +.+.+.|+|.|=+=.     ..+.+..+++... .++..  +++|- |+.+++.   .+-++.+.++|.|-|=-.....+
T Consensus       118 ~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~-a~~l~--vTFHRAFD~~~d~---~~Ale~Li~lGvdrILTSG~~~~  191 (287)
T 3iwp_A          118 RLAKLYGADGLVFGALTEDGHIDKELCMSLMAI-CRPLP--VTFHRAFDMVHDP---MAALETLLTLGFERVLTSGCDSS  191 (287)
T ss_dssp             HHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHH-HTTSC--EEECGGGGGCSCH---HHHHHHHHHHTCSEEEECTTSSS
T ss_pred             HHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHH-cCCCc--EEEECchhccCCH---HHHHHHHHHcCCCEEECCCCCCC
Confidence            677788999887742     2334445556532 12333  47786 8887764   44566666778776554443344


Q ss_pred             HHHHHHHHH
Q 014691          179 ITDVARVFQ  187 (420)
Q Consensus       179 ~~D~~~ll~  187 (420)
                      ..+-+..++
T Consensus       192 a~~Gl~~Lk  200 (287)
T 3iwp_A          192 ALEGLPLIK  200 (287)
T ss_dssp             TTTTHHHHH
T ss_pred             hHHhHHHHH
Confidence            444444443

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=93.42  E-value=0.064  Score=50.07  Aligned_cols=42  Identities=29%  Similarity=0.364  Sum_probs=32.6

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEE-EeCChhhhh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVI-ANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v-~nR~~~ka~  418 (420)
                      ..+.+|++||.|+ ||.|++++..|.+.|++|++ ..|+.++++
T Consensus        22 ~~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~   65 (267)
T 4iiu_A           22 SNAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQ   65 (267)
T ss_dssp             ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHH
Confidence            3567899999986 88999999999999997755 567766554

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=93.41  E-value=0.088  Score=51.03  Aligned_cols=39  Identities=31%  Similarity=0.448  Sum_probs=35.3

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+...|++|+.++++++|.+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~  204 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLN  204 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence            578999999999999999999999999999999988764

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=93.40  E-value=0.094  Score=51.31  Aligned_cols=39  Identities=36%  Similarity=0.432  Sum_probs=35.1

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|+|.|+ ||+|.+++..+...|++|+++.|+.++.+
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~  209 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQK  209 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHH
Confidence            4789999997 99999999999999999999999987754

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=93.39  E-value=0.099  Score=51.41  Aligned_cols=39  Identities=28%  Similarity=0.419  Sum_probs=34.9

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+...|++|+++.|+.++.+
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~  225 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKE  225 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            578999999999999999999999999999999877643

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=93.29  E-value=0.069  Score=52.26  Aligned_cols=40  Identities=23%  Similarity=0.220  Sum_probs=36.6

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.|+++.|||.|.+|++++..|..+|++|++++|+.++
T Consensus       141 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~  180 (333)
T 1dxy_A          141 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK  180 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcch
Confidence            4678999999999999999999999999999999998654

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=93.22  E-value=0.082  Score=50.36  Aligned_cols=39  Identities=36%  Similarity=0.417  Sum_probs=34.7

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++++|+|+ ||+|.+++..+...|++|+.+.|+.++.+
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~  164 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA  164 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            4789999998 99999999999999999999999877654

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=93.21  E-value=0.082  Score=54.10  Aligned_cols=36  Identities=25%  Similarity=0.350  Sum_probs=33.9

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      ++|.|||+|-+|.+++..|++.|.+|++++|+++++
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a   90 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRC   90 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHH
Confidence            689999999999999999999999999999998854

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=93.18  E-value=0.082  Score=52.10  Aligned_cols=39  Identities=31%  Similarity=0.451  Sum_probs=35.7

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      ..+.|+++.|||.|.+|++++..|..+|++|+++||+.+
T Consensus       164 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~  202 (347)
T 1mx3_A          164 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS  202 (347)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             cCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            357899999999999999999999999999999999754

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=93.17  E-value=0.13  Score=51.84  Aligned_cols=52  Identities=35%  Similarity=0.417  Sum_probs=42.3

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEE-EEeC
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANR  412 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~-v~nR  412 (420)
                      ++|.+.++++.+..       .+.+++|++|+|.|.|.+|+.++..|.++|++|+ |.++
T Consensus       198 g~Gv~~~~~~~~~~-------~g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~  250 (419)
T 3aoe_E          198 GLGALLVLEALAKR-------RGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATS  250 (419)
T ss_dssp             HHHHHHHHHHHHHH-------HTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             HHHHHHHHHHHHHh-------cCCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcC
Confidence            67777777666542       1257899999999999999999999999999655 8888

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=93.17  E-value=0.088  Score=50.60  Aligned_cols=39  Identities=21%  Similarity=0.175  Sum_probs=31.8

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      ..++++++||.|+ |+.|++++..|.+.|.+|++++|+..
T Consensus        17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~   56 (333)
T 2q1w_A           17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFAT   56 (333)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCc
Confidence            4567899999995 88999999999999999999999753

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=93.17  E-value=0.11  Score=50.98  Aligned_cols=39  Identities=38%  Similarity=0.467  Sum_probs=35.2

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+...|++|+++.++.+|.+
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~  227 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLD  227 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHH
Confidence            578999999999999999999999999999999977754

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=93.17  E-value=0.078  Score=54.23  Aligned_cols=38  Identities=24%  Similarity=0.297  Sum_probs=34.7

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      -++|.|||+|-+|.+++..|+..|.+|++++|++++++
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~   74 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLD   74 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence            46899999999999999999999999999999987654

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=93.15  E-value=1.3  Score=43.38  Aligned_cols=158  Identities=18%  Similarity=0.250  Sum_probs=104.0

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 014691           33 ESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA  112 (420)
Q Consensus        33 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~  112 (420)
                      .|.+..++|++++.+.|||+|-+=+...   +..+.+..+++..++|++.-+=       |  +    .++...+++.|+
T Consensus        43 ~D~~atv~Qi~~l~~aG~diVRvavp~~---~~a~al~~I~~~~~vPlvaDiH-------f--~----~~lal~a~e~G~  106 (366)
T 3noy_A           43 HDVEATLNQIKRLYEAGCEIVRVAVPHK---EDVEALEEIVKKSPMPVIADIH-------F--A----PSYAFLSMEKGV  106 (366)
T ss_dssp             TCHHHHHHHHHHHHHTTCCEEEEECCSH---HHHHHHHHHHHHCSSCEEEECC-------S--C----HHHHHHHHHTTC
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeCCCCh---HHHHHHHHHHhcCCCCEEEeCC-------C--C----HHHHHHHHHhCC
Confidence            5688999999999999999998876532   2245677888889999997642       2  1    135556888899


Q ss_pred             cEEEEEcccc--cchhHHHh-hcCCCCcEE-EE-EcccC---------CCCCC--HHHHHHHHHHHHHcCCCEEEEEeec
Q 014691          113 DYIDVELQVA--REFNDSIR-GKKPEKCKV-IV-SSHNY---------QYTPS--VEDLSNLVARIQASGADIVKFATTA  176 (420)
Q Consensus       113 d~iDiEl~~~--~~~~~~l~-~~~~~~~ki-I~-S~H~f---------~~tP~--~~el~~~~~~~~~~gaDivKia~~~  176 (420)
                      |-+=|--..-  ++.++.+. ..+..++.| |. .+=..         ..||.  .+...+..+.+.++|-+=+++-..+
T Consensus       107 dklRINPGNig~~~~~~~vv~~ak~~~~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~gf~~iviS~K~  186 (366)
T 3noy_A          107 HGIRINPGNIGKEEIVREIVEEAKRRGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWGFTNYKVSIKG  186 (366)
T ss_dssp             SEEEECHHHHSCHHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred             CeEEECCcccCchhHHHHHHHHHHHcCCCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCCeEEEeeec
Confidence            9876654321  22233343 223344444 32 22111         13441  2445666778888998888899999


Q ss_pred             CCHHHHHHHHHHhcc-CCCCEEEEecCCcchh
Q 014691          177 LDITDVARVFQITVH-SQVPIIGLVMGERGLI  207 (420)
Q Consensus       177 ~s~~D~~~ll~~~~~-~~~p~I~~~MG~~G~~  207 (420)
                      .+..+.....+.+.. .+.|+ .++.++.|..
T Consensus       187 S~v~~~i~ayr~la~~~dyPL-HlGvTEAG~~  217 (366)
T 3noy_A          187 SDVLQNVRANLIFAERTDVPL-HIGITEAGMG  217 (366)
T ss_dssp             SSHHHHHHHHHHHHHHCCCCE-EECCSSCCSH
T ss_pred             CChHHHHHHHHHHHhccCCCE-EEccCCCCCC
Confidence            998888887776543 58886 6888887755

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=93.14  E-value=0.11  Score=50.64  Aligned_cols=39  Identities=41%  Similarity=0.488  Sum_probs=34.6

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+..+|++|+++.|+.++.+
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~  206 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLE  206 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence            478999999999999999988899999999999887754

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=93.11  E-value=1.7  Score=40.54  Aligned_cols=113  Identities=13%  Similarity=0.065  Sum_probs=76.3

Q ss_pred             CCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecC--C-CCCCc-hhHHHHHHhhC-CCcEEEEeccCCCCCCCCC
Q 014691           21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDG--L-KNFNP-RENIKTLIKES-PVPTLFTYRPIWEGGQYDG   95 (420)
Q Consensus        21 ~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~--l-~~~~~-~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~   95 (420)
                      +++++|+-+|..-|...+.++++.+.+.|+|++.+++=-  | +++.- .+.++.+++.. ++|+-+.+-..        
T Consensus        25 m~~~~i~pSilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~--------   96 (246)
T 3inp_A           25 MKHIQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVK--------   96 (246)
T ss_dssp             --CCEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECS--------
T ss_pred             ccCCeeehhhhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeC--------
Confidence            445789999999999999999999888899999987732  2 22221 24677887777 89998887632        


Q ss_pred             CHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcc
Q 014691           96 DENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSH  144 (420)
Q Consensus        96 ~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H  144 (420)
                      +.+.|   ++.+++.|+|+|-+=....+...+.+...++.+.|+.++.+
T Consensus        97 ~p~~~---i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvaln  142 (246)
T 3inp_A           97 PVDAL---IESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALN  142 (246)
T ss_dssp             SCHHH---HHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEEC
T ss_pred             CHHHH---HHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEec
Confidence            22334   45567889999988655433333333333455777777765

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=93.08  E-value=0.065  Score=52.42  Aligned_cols=38  Identities=21%  Similarity=0.245  Sum_probs=35.5

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+.|+++.|||.|.+|++++..|..+|++|+.++|+.
T Consensus       141 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~  178 (330)
T 4e5n_A          141 TGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKA  178 (330)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSC
T ss_pred             CccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            46789999999999999999999999999999999986

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=93.07  E-value=0.086  Score=51.25  Aligned_cols=39  Identities=28%  Similarity=0.433  Sum_probs=35.4

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+...|+ +|+.+.|+.++.+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~  203 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLA  203 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            68899999999999999998899999 9999999987754

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=93.07  E-value=0.096  Score=51.01  Aligned_cols=39  Identities=33%  Similarity=0.318  Sum_probs=34.8

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+...|++|+++.++++|.+
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~  214 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQ  214 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence            478999999999999999999999999999998877754

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=93.06  E-value=0.082  Score=49.41  Aligned_cols=39  Identities=23%  Similarity=0.416  Sum_probs=31.8

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEe-CChhh
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN-RTYEN  416 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~n-R~~~k  416 (420)
                      .+++|.++|.|+ ||.|++++..|.+.|++|.+++ |+.++
T Consensus        22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~   62 (269)
T 3gk3_A           22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDH   62 (269)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHH
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHH
Confidence            467889999996 8899999999999999988888 55443

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=93.02  E-value=0.097  Score=51.32  Aligned_cols=40  Identities=20%  Similarity=0.351  Sum_probs=36.4

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.|+++.|||.|.+|++++..|..+|++|+.++|+.++
T Consensus       161 ~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~  200 (335)
T 2g76_A          161 TELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP  200 (335)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH
T ss_pred             cCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch
Confidence            4678999999999999999999999999999999997654

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=93.00  E-value=0.086  Score=52.97  Aligned_cols=34  Identities=24%  Similarity=0.273  Sum_probs=31.0

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .++|+|||+|.+|.+++..|++.|.+|+|+.|..
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            4689999999999999999999999999999864

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=92.98  E-value=0.098  Score=51.65  Aligned_cols=39  Identities=26%  Similarity=0.363  Sum_probs=36.1

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      ..+.||++.|||.|.+|++++..|..+|++|+.++|+..
T Consensus       156 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~  194 (352)
T 3gg9_A          156 RVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENS  194 (352)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHH
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCC
Confidence            567899999999999999999999999999999999864

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=92.97  E-value=0.09  Score=51.21  Aligned_cols=39  Identities=31%  Similarity=0.344  Sum_probs=35.4

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+...|+ +|+++.|+.++.+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~  206 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRE  206 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            68899999999999999999999999 9999999987754

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=92.91  E-value=0.099  Score=51.50  Aligned_cols=40  Identities=30%  Similarity=0.433  Sum_probs=36.5

Q ss_pred             ccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       376 ~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      +..+.||++.|||.|.+|++++..|..+|++|..+||+..
T Consensus       168 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~  207 (345)
T 4g2n_A          168 GMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRL  207 (345)
T ss_dssp             BCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             ccccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCc
Confidence            3568899999999999999999999999999999999853

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=92.90  E-value=0.099  Score=50.47  Aligned_cols=38  Identities=29%  Similarity=0.315  Sum_probs=35.4

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      .+.|+++.|||.|.+|++++..|..+|++|++++|+.+
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~  158 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK  158 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            57899999999999999999999999999999999864

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.87  E-value=0.063  Score=51.73  Aligned_cols=39  Identities=31%  Similarity=0.342  Sum_probs=34.9

Q ss_pred             CCCEEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviG-aGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|+|.| +||+|++++..+...|++|+++.|+.++.+
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~  179 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQ  179 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            578999999 699999999999999999999999987654

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=92.82  E-value=0.069  Score=51.63  Aligned_cols=39  Identities=28%  Similarity=0.375  Sum_probs=34.9

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++++|.|+ ||+|.+++..+...|++|++++|+.++.+
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~  184 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAE  184 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            5789999995 99999999999999999999999987654

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=92.78  E-value=0.11  Score=51.16  Aligned_cols=41  Identities=29%  Similarity=0.352  Sum_probs=37.2

Q ss_pred             ccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       376 ~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      +..+.||++.|||.|.+|++++..|..+|++|+.++|+.++
T Consensus       143 ~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~  183 (343)
T 2yq5_A          143 SNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNP  183 (343)
T ss_dssp             BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCG
T ss_pred             ccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhh
Confidence            35678999999999999999999999999999999998654

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=92.73  E-value=0.081  Score=51.42  Aligned_cols=39  Identities=31%  Similarity=0.358  Sum_probs=35.1

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|+++||+|+ ||+|++++..+...|++|+.+.|+.++.+
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~  205 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLR  205 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            4789999999 99999999999999999999999887754

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=92.72  E-value=0.084  Score=51.67  Aligned_cols=39  Identities=23%  Similarity=0.338  Sum_probs=35.0

Q ss_pred             CCCEEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviG-aGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|+|+| +||+|.+++..+...|++|++++|+.++.+
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~  201 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQ  201 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            578999999 699999999999999999999999987754

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=92.72  E-value=0.11  Score=51.43  Aligned_cols=34  Identities=26%  Similarity=0.369  Sum_probs=31.5

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+|+|||+|.+|.+++..|++.|.+|+|+.|..
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   59 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN   59 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999999874

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=92.67  E-value=0.087  Score=51.44  Aligned_cols=39  Identities=38%  Similarity=0.365  Sum_probs=35.0

Q ss_pred             CC--CEEEEEcc-chHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AG--KLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~--k~vlviGa-GGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|  ++|||.|+ ||+|++++..+...|+ +|+++.|+.++.+
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~  200 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCI  200 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHH
Confidence            46  89999998 9999999999999999 9999999987654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.66  E-value=0.14  Score=50.37  Aligned_cols=39  Identities=33%  Similarity=0.348  Sum_probs=34.5

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|.+|||+|+|++|.+++..+...|++|+++.+++++.+
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~  232 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKRE  232 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            478999999999999999988899999999999877754

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=92.59  E-value=0.12  Score=50.35  Aligned_cols=39  Identities=36%  Similarity=0.493  Sum_probs=35.0

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+ ||+|.+++..+...|++|+++.|+.++.+
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~  198 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATE  198 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            5789999998 99999999999999999999999877654

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=92.55  E-value=0.12  Score=50.02  Aligned_cols=39  Identities=33%  Similarity=0.467  Sum_probs=35.0

Q ss_pred             CCCEEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviG-aGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+| +||+|.+++..+...|++|+++.|+.+|.+
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~  187 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLK  187 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            578999999 799999999999999999999999887754

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=92.54  E-value=0.099  Score=51.61  Aligned_cols=38  Identities=32%  Similarity=0.405  Sum_probs=35.5

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+.|+++.|||.|.+|++++..|..+|++|+.++|+.
T Consensus       160 ~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~  197 (351)
T 3jtm_A          160 YDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQ  197 (351)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSC
T ss_pred             ccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCc
Confidence            46889999999999999999999999999999999975

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=92.53  E-value=0.11  Score=50.90  Aligned_cols=39  Identities=28%  Similarity=0.414  Sum_probs=34.4

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+..+|++|+.+.|+.++.+
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~  217 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKRE  217 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence            478999999999999999988889999999998877654

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=92.52  E-value=0.077  Score=54.10  Aligned_cols=35  Identities=43%  Similarity=0.409  Sum_probs=32.2

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+++|+|||+|.+|.++++.|.+.|.+|+|+.+..
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~  155 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYD  155 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            46889999999999999999999999999999863

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=92.48  E-value=0.17  Score=51.35  Aligned_cols=53  Identities=28%  Similarity=0.464  Sum_probs=40.2

Q ss_pred             ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          351 NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       351 NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      |.|+.-+.+.++..+.          ..-..++|+|||+|-+|.++++.|.+.|.+|+|+.+.
T Consensus        13 ~~~~~~~~~~~~~~~~----------~~~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~   65 (498)
T 2iid_A           13 ENDYEEFLEIARNGLK----------ATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEAS   65 (498)
T ss_dssp             CTTHHHHHHHHHHCSC----------CCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             chhHHHHHHHhccCCC----------CCCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            5676666655544331          1123578999999999999999999999999999875

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=92.45  E-value=0.16  Score=49.68  Aligned_cols=39  Identities=36%  Similarity=0.446  Sum_probs=34.7

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+..+|+ +|++++++.+|.+
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  210 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLS  210 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            47899999999999999998889999 9999999887643

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=92.44  E-value=0.081  Score=50.23  Aligned_cols=35  Identities=14%  Similarity=0.168  Sum_probs=31.8

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..++|+|||+|.+|.++++.|.+.|.+|+|+.+..
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~   55 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMM   55 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            35789999999999999999999999999999853

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=92.41  E-value=5.4  Score=38.04  Aligned_cols=196  Identities=14%  Similarity=0.094  Sum_probs=110.8

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCC------CCch-hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLKN------FNPR-ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRL  106 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~------~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~  106 (420)
                      +.++.++-++.+.+.|+|.||.=.  +..      ..+. +.++.+.+..+.|+..-++          .    .+-+++
T Consensus        28 ~~e~k~~i~~~L~~~Gv~~IE~g~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~----------~----~~~i~~   91 (302)
T 2ftp_A           28 EVADKIRLVDDLSAAGLDYIEVGS--FVSPKWVPQMAGSAEVFAGIRQRPGVTYAALAP----------N----LKGFEA   91 (302)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEEE--CSCTTTCGGGTTHHHHHHHSCCCTTSEEEEECC----------S----HHHHHH
T ss_pred             CHHHHHHHHHHHHHcCcCEEEECC--CcCccccccccCHHHHHHHhhhcCCCEEEEEeC----------C----HHHHHH
Confidence            456666666666778999999853  111      0111 1223332223455544332          1    246778


Q ss_pred             HHHhCCcEEEEEccccc---------------chhHHHh-hcCCCCcEEEE------EcccCCCCCCHHHHHHHHHHHHH
Q 014691          107 AMELGADYIDVELQVAR---------------EFNDSIR-GKKPEKCKVIV------SSHNYQYTPSVEDLSNLVARIQA  164 (420)
Q Consensus       107 ~~~~~~d~iDiEl~~~~---------------~~~~~l~-~~~~~~~kiI~------S~H~f~~tP~~~el~~~~~~~~~  164 (420)
                      +++.|++.|.+-....+               +..++.. ..+..+.+|-.      +..+... -+.+++.+.++++.+
T Consensus        92 a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~-~~~~~~~~~~~~~~~  170 (302)
T 2ftp_A           92 ALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGD-VDPRQVAWVARELQQ  170 (302)
T ss_dssp             HHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBC-CCHHHHHHHHHHHHH
T ss_pred             HHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCC-CCHHHHHHHHHHHHH
Confidence            88999999988443322               1112222 23445666632      2222111 246789999999999


Q ss_pred             cCCCEEEEEeec--CCHHHHHHHHHHhccC--CCCEEEEe--cCCcchhhhhhccccCCcccccccCC--CccCC---CC
Q 014691          165 SGADIVKFATTA--LDITDVARVFQITVHS--QVPIIGLV--MGERGLISRILCAKFGGFLTFGTLEN--GIVSA---PG  233 (420)
Q Consensus       165 ~gaDivKia~~~--~s~~D~~~ll~~~~~~--~~p~I~~~--MG~~G~~SRi~~~~~Gs~ltf~~~~~--~~~sA---PG  233 (420)
                      .|+|.+-++-+.  -++.++.++++.+.+.  +.|+-..+  .--++...=+..-..|....=+++..  +.|-|   .|
T Consensus       171 ~G~d~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~~vd~tv~GlG~cp~a~gr~G  250 (302)
T 2ftp_A          171 MGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFDSSVAGLGGCPYAKGATG  250 (302)
T ss_dssp             TTCSEEEEEESSSCCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCCBCGGGTTCBC
T ss_pred             cCCCEEEEeCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEecccccCCCCCCCCCCC
Confidence            999999998443  4788998888876543  46777666  33344443333333444332233321  11233   56


Q ss_pred             CCCHHhHHHHHhc
Q 014691          234 QPTIKDLLDLYNF  246 (420)
Q Consensus       234 Q~~~~~l~~~~~~  246 (420)
                      +++++++...++.
T Consensus       251 N~~~E~lv~~l~~  263 (302)
T 2ftp_A          251 NVASEDVLYLLNG  263 (302)
T ss_dssp             BCBHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHh
Confidence            9999888766653

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=92.38  E-value=4.7  Score=39.36  Aligned_cols=92  Identities=18%  Similarity=0.204  Sum_probs=63.1

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecC---------CCC-C--Cc---hhHHHHHHhhCCCcEEEEeccCCC
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDG---------LKN-F--NP---RENIKTLIKESPVPTLFTYRPIWE   89 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~---------l~~-~--~~---~~~l~~l~~~~~~PiI~T~R~~~e   89 (420)
                      .+++-|.+.+.+++.+-++.+...|+|.||+-..+         +.. +  ++   .+.++.+++..++|+.+-+|...+
T Consensus        59 p~~vQL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~  138 (350)
T 3b0p_A           59 PIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLE  138 (350)
T ss_dssp             SEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBT
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcC
Confidence            46678889999999888888878899999999853         211 0  11   122344444568999888885322


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 014691           90 GGQYDGDENERVDVLRLAMELGADYIDVEL  119 (420)
Q Consensus        90 GG~~~~~~~~~~~ll~~~~~~~~d~iDiEl  119 (420)
                      .   ..+.++-.++.+.+.+.|+++|.|.-
T Consensus       139 ~---~~~~~~~~~~a~~l~~aG~d~I~V~~  165 (350)
T 3b0p_A          139 G---KETYRGLAQSVEAMAEAGVKVFVVHA  165 (350)
T ss_dssp             T---CCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             c---cccHHHHHHHHHHHHHcCCCEEEEec
Confidence            1   12334667788888899999999854

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=92.37  E-value=0.13  Score=50.03  Aligned_cols=39  Identities=33%  Similarity=0.446  Sum_probs=34.8

Q ss_pred             CCCEEEEEccc-hHHHHHHHHHHhC-CCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAG-GAGKALAYGAKAK-GARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaG-Gaara~~~aL~~~-g~~i~v~nR~~~ka~  418 (420)
                      .|++|+|+|+| |+|++++..+... |++|++++|+.++.+
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~  210 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVE  210 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            57899999998 8999999999888 999999999987754

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=92.34  E-value=0.099  Score=51.84  Aligned_cols=39  Identities=18%  Similarity=0.193  Sum_probs=35.5

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCe-EEEEeCChh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYE  415 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~-i~v~nR~~~  415 (420)
                      ..+.|+++.|||.|.+|++++..|..+|++ |++++|+..
T Consensus       160 ~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~  199 (364)
T 2j6i_A          160 YDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQAL  199 (364)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCC
T ss_pred             ccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCcc
Confidence            468899999999999999999999999996 999999763

>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7

Probab=92.34  E-value=1.2  Score=40.95  Aligned_cols=132  Identities=17%  Similarity=0.185  Sum_probs=73.8

Q ss_pred             HHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEec--cCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 014691           36 DKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYR--PIWEGGQYDGDENERVDVLRLAMELGAD  113 (420)
Q Consensus        36 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R--~~~eGG~~~~~~~~~~~ll~~~~~~~~d  113 (420)
                      ++.++.+   .+.|.|.||++.+++...+..++++.+++...+++....-  -....+..  . +...+.++.|..+|+.
T Consensus        26 ~~~l~~a---~~~G~~~vEl~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~--~-~~~~~~i~~A~~lGa~   99 (264)
T 1yx1_A           26 ASFLPLL---AMAGAQRVELREELFAGPPDTEALTAAIQLQGLECVFSSPLELWREDGQL--N-PELEPTLRRAEACGAG   99 (264)
T ss_dssp             GGGHHHH---HHHTCSEEEEEGGGCSSCCCHHHHHHHHHHTTCEEEEEEEEEEECTTSSB--C-TTHHHHHHHHHHTTCS
T ss_pred             HHHHHHH---HHcCCCEEEEEHHhcCCCHHHHHHHHHHHHcCCEEEEecchhhcCCchhH--H-HHHHHHHHHHHHcCCC
Confidence            4455444   4679999999998765322345677777777877654321  10111111  1 2344678888899999


Q ss_pred             EEEEEcccc--cchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Q 014691          114 YIDVELQVA--REFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT  174 (420)
Q Consensus       114 ~iDiEl~~~--~~~~~~l~~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~  174 (420)
                      +|=+-....  .+.++.+.. +.+.++++.+=.|.+....+.+++.++++...+.+.+ +++..
T Consensus       100 ~v~~~~g~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~~~~~~~~~~~~ll~~v~~~~~~-vg~~~  162 (264)
T 1yx1_A          100 WLKVSLGLLPEQPDLAALGRRLARHGLQLLVENDQTPQGGRIEVLERFFRLAERQQLD-LAMTF  162 (264)
T ss_dssp             EEEEEEECCCSSCCHHHHHHHHTTSSCEEEEECCSSHHHHCHHHHHHHHHHHHHTTCS-EEEEE
T ss_pred             EEEEecCCCCcHHHHHHHHHHHHhcCCEEEEecCCCCCCCCHHHHHHHHHHHHhcCCC-eEEEE
Confidence            987754321  123444442 3345666555444321112345666666666555656 77765

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=92.30  E-value=0.16  Score=49.96  Aligned_cols=39  Identities=28%  Similarity=0.448  Sum_probs=34.8

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+..+|+ +|+.++++++|.+
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  234 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFP  234 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            47899999999999999998889999 8999999887754

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=92.29  E-value=0.16  Score=49.91  Aligned_cols=39  Identities=31%  Similarity=0.559  Sum_probs=34.9

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+...|+ +|+.++|+++|.+
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~  230 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFA  230 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            57899999999999999998999999 8999999887754

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=92.25  E-value=0.14  Score=50.14  Aligned_cols=39  Identities=33%  Similarity=0.411  Sum_probs=34.6

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+...|+ .|+++.++++|.+
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  218 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLK  218 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            47899999999999999999999999 4999999887754

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=92.22  E-value=0.11  Score=50.15  Aligned_cols=39  Identities=28%  Similarity=0.382  Sum_probs=35.0

Q ss_pred             CCCEEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviG-aGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+| +||+|.+++..+...|++|+++.|+++|.+
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~  179 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAA  179 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            578999999 799999999999999999999999987754

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=92.22  E-value=0.086  Score=51.04  Aligned_cols=38  Identities=26%  Similarity=0.352  Sum_probs=33.3

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCC----CeEEEEeCChh--hhh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKG----ARVVIANRTYE--NLQ  418 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g----~~i~v~nR~~~--ka~  418 (420)
                      ..++.|||+|.+|.+++..|.+.|    .+|+++||+.+  +++
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~   65 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVS   65 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHH
Confidence            357999999999999999999999    58999999975  554

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=92.22  E-value=0.14  Score=50.19  Aligned_cols=39  Identities=26%  Similarity=0.378  Sum_probs=34.4

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhC-CCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAK-GARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~-g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+... |++|+.++++++|.+
T Consensus       186 ~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~  225 (359)
T 1h2b_A          186 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLK  225 (359)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence            478999999999999999888888 999999999887754

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=92.20  E-value=0.17  Score=50.16  Aligned_cols=39  Identities=33%  Similarity=0.412  Sum_probs=34.7

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+..+|+ +|++++++.+|.+
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~  224 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLA  224 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHH
Confidence            47899999999999999998889999 8999999887754

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=92.18  E-value=0.17  Score=49.75  Aligned_cols=39  Identities=26%  Similarity=0.512  Sum_probs=34.9

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+..+|+ +|+.++++++|.+
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~  231 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFE  231 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence            47899999999999999998999999 8999999887754

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=92.11  E-value=0.12  Score=51.89  Aligned_cols=39  Identities=15%  Similarity=0.081  Sum_probs=35.7

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      ..+.|+++.|||.|.+|++++..|..+|++|+.++|+..
T Consensus       187 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~  225 (393)
T 2nac_A          187 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL  225 (393)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            467899999999999999999999999999999999853

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=92.11  E-value=0.14  Score=50.82  Aligned_cols=39  Identities=33%  Similarity=0.557  Sum_probs=34.8

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+...|+ +|+.++|+.+|.+
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  224 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLK  224 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence            47899999999999999988888999 9999999987754

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=92.09  E-value=0.14  Score=50.10  Aligned_cols=38  Identities=26%  Similarity=0.296  Sum_probs=33.9

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      .|++|||+|+|++|.+++..+...|++|+++.++.+|.
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~  217 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKR  217 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHH
Confidence            57899999999999999998888999999999987764

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=92.08  E-value=0.17  Score=50.41  Aligned_cols=40  Identities=20%  Similarity=0.361  Sum_probs=36.4

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.||++.|||.|.+|++++..|..+|++|..++|+.+.
T Consensus       115 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~  154 (381)
T 3oet_A          115 FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAA  154 (381)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred             CccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHH
Confidence            5688999999999999999999999999999999986543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=92.03  E-value=0.14  Score=49.72  Aligned_cols=39  Identities=23%  Similarity=0.187  Sum_probs=34.7

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhC--CCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAK--GARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~--g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+...  |++|+.+.++.+|.+
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~  210 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRD  210 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence            688999999999999999888888  999999999887754

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=92.02  E-value=0.19  Score=48.53  Aligned_cols=40  Identities=33%  Similarity=0.334  Sum_probs=34.7

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      ..|++|+|+|+||+|..++..++.+|+ .+.+++++++|.+
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~  199 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLA  199 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHH
Confidence            357899999999999999999999999 6788899887653

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=91.94  E-value=0.15  Score=50.10  Aligned_cols=39  Identities=31%  Similarity=0.516  Sum_probs=34.6

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+..+|+ +|+++.++++|.+
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  230 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFP  230 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHH
Confidence            57899999999999999988888999 8999999887754

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=91.94  E-value=0.18  Score=49.66  Aligned_cols=39  Identities=26%  Similarity=0.388  Sum_probs=34.9

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+...|+ +|+++.++++|.+
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  221 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRR  221 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            47899999999999999999999999 8999999887754

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=91.88  E-value=0.2  Score=49.92  Aligned_cols=40  Identities=25%  Similarity=0.411  Sum_probs=36.3

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.|+++.|||.|.+|++++..|..+|++|++++|+.++
T Consensus       112 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~  151 (380)
T 2o4c_A          112 ADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQA  151 (380)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred             cccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhh
Confidence            4678999999999999999999999999999999987653

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=91.81  E-value=0.12  Score=50.38  Aligned_cols=39  Identities=23%  Similarity=0.303  Sum_probs=34.9

Q ss_pred             CCCEEEEE-ccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVI-GAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlvi-GaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+ |+||+|.+++..+...|++|+++.|+.++.+
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~  206 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCE  206 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            57899999 5799999999999999999999999988764

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=91.79  E-value=0.15  Score=49.65  Aligned_cols=41  Identities=17%  Similarity=0.210  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhC-CCeEEEEeCChhhhh
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAK-GARVVIANRTYENLQ  418 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~-g~~i~v~nR~~~ka~  418 (420)
                      .+.+++|||.|+ |..|++++..|.+. |.+|++++|+.++.+
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~   63 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLG   63 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTG
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhh
Confidence            456889999996 88999999999988 889999999876654

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=91.66  E-value=0.12  Score=50.81  Aligned_cols=39  Identities=26%  Similarity=0.273  Sum_probs=34.6

Q ss_pred             CCCEEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviG-aGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+| +||+|.+++..+...|++|+++.|+.++.+
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~  202 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSA  202 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence            478999999 699999999999999999999999877654

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=91.64  E-value=0.17  Score=49.66  Aligned_cols=39  Identities=31%  Similarity=0.581  Sum_probs=34.7

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+...|+ +|+.++++.+|.+
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~  229 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFA  229 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            57899999999999999998888999 8999999887754

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=91.64  E-value=0.19  Score=49.17  Aligned_cols=39  Identities=18%  Similarity=0.193  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      +.+++++||.|+ |+.|++++..|.+.|++|++++|+.++
T Consensus        26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   65 (379)
T 2c5a_A           26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNE   65 (379)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCS
T ss_pred             cccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            346789999997 889999999999999999999998654

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=91.63  E-value=0.17  Score=51.91  Aligned_cols=35  Identities=31%  Similarity=0.433  Sum_probs=31.9

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..++|+|||+|.+|.+++..|++.|.+|+|+.+..
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~  125 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRI  125 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEecc
Confidence            35789999999999999999999999999999864

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=91.61  E-value=0.13  Score=49.99  Aligned_cols=39  Identities=15%  Similarity=0.274  Sum_probs=34.3

Q ss_pred             CCCEEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaG-Gaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+| |+|.+++..+...|++|+++.|+.++.+
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~  183 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTE  183 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            57899999997 8999999988889999999999877654

>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...

Probab=91.60  E-value=3.4  Score=39.59  Aligned_cols=144  Identities=19%  Similarity=0.236  Sum_probs=89.5

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCC----CCCchhHHHHH-------HhhCCCcEEEEeccCCCCCCCCCCHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLK----NFNPRENIKTL-------IKESPVPTLFTYRPIWEGGQYDGDENERVD  102 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~l~~l-------~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~  102 (420)
                      +.+++++.+++..+.|||+|.+-...-.    ..+..++++++       .+..+.|+.+--.              +.+
T Consensus        61 ~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~~vpiSIDT~--------------~~~  126 (297)
T 1tx2_A           61 EVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPISIDTY--------------KAE  126 (297)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSCSCEEEECS--------------CHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEeCC--------------CHH
Confidence            4688888888888999999999987642    12223334332       2334777644311              235


Q ss_pred             HHHHHHHhCCcEE-EEEccc-ccchhHHHhhcCCCCcEEEEEcccCCCCCC--------HHHHHHHHHHHHHcCCCEEEE
Q 014691          103 VLRLAMELGADYI-DVELQV-AREFNDSIRGKKPEKCKVIVSSHNYQYTPS--------VEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       103 ll~~~~~~~~d~i-DiEl~~-~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~--------~~el~~~~~~~~~~gaDivKi  172 (420)
                      ..++|++.|+++| ||-... .++..+.+.   +.+..+|+. |+ +++|.        .+.+.+.++.+.+.|.+-=+|
T Consensus       127 V~~aAl~aGa~iINdvsg~~~d~~m~~~aa---~~g~~vVlm-h~-~G~p~y~d~v~ev~~~l~~~i~~a~~~GI~~~~I  201 (297)
T 1tx2_A          127 VAKQAIEAGAHIINDIWGAKAEPKIAEVAA---HYDVPIILM-HN-RDNMNYRNLMADMIADLYDSIKIAKDAGVRDENI  201 (297)
T ss_dssp             HHHHHHHHTCCEEEETTTTSSCTHHHHHHH---HHTCCEEEE-CC-CSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred             HHHHHHHcCCCEEEECCCCCCCHHHHHHHH---HhCCcEEEE-eC-CCCCCcchHHHHHHHHHHHHHHHHHHcCCChhcE
Confidence            7888999999888 443332 333333332   245677776 43 66776        355777788888888652245


Q ss_pred             Eee-----cCCHHHHHHHHHHhcc---CCCCE
Q 014691          173 ATT-----ALDITDVARVFQITVH---SQVPI  196 (420)
Q Consensus       173 a~~-----~~s~~D~~~ll~~~~~---~~~p~  196 (420)
                      ..=     .++.++++.+++-+..   .+.|+
T Consensus       202 ilDPg~Gfgk~~~~n~~ll~~l~~l~~lg~Pv  233 (297)
T 1tx2_A          202 ILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPV  233 (297)
T ss_dssp             EEECCTTSSCCHHHHHHHHHTGGGGGGGCSCB
T ss_pred             EEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCE
Confidence            543     4778999888876553   35564

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=91.57  E-value=4.1  Score=38.84  Aligned_cols=145  Identities=20%  Similarity=0.212  Sum_probs=88.6

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (420)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~  111 (420)
                      ..+.+++.+-++++.+.+++.|=+.--+.      ......++..++++. |+-.-..|-.   +.+.+..-.+.|++.|
T Consensus        70 ~~T~~dI~~lc~eA~~~g~aaVCV~P~~V------~~a~~~L~~s~V~V~-tVigFP~G~~---~~~~Kv~Ea~~Ai~~G  139 (288)
T 3oa3_A           70 SATGSQIDVLCAEAKEYGFATVCVRPDYV------SRAVQYLQGTQVGVT-CVIGFHEGTY---STDQKVSEAKRAMQNG  139 (288)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEECGGGH------HHHHHHTTTSSCEEE-EEESTTTSCS---CHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHhcCCcEEEECHHHH------HHHHHHcCCCCCeEE-EEeCCCCCCC---cHHHHHHHHHHHHHcC
Confidence            34577888878888888877765432221      123333344455554 5543222222   3366676778899999


Q ss_pred             CcEEEEEcccc-------cchhHHH---hhc-CCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe----ec
Q 014691          112 ADYIDVELQVA-------REFNDSI---RGK-KPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT----TA  176 (420)
Q Consensus       112 ~d~iDiEl~~~-------~~~~~~l---~~~-~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~----~~  176 (420)
                      +|-||+=++..       +...+++   ... +....|+|+---.    .+.+|+....+-+.+.|||+||--+    ..
T Consensus       140 AdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~----Lt~eei~~A~~ia~eaGADfVKTSTGf~~~G  215 (288)
T 3oa3_A          140 ASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETSQ----LTADEIIAGCVLSSLAGADYVKTSTGFNGPG  215 (288)
T ss_dssp             CSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGG----CCHHHHHHHHHHHHHTTCSEEECCCSSSSCC
T ss_pred             CCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEECCC----CCHHHHHHHHHHHHHcCCCEEEcCCCCCCCC
Confidence            99999766542       1222333   322 2234888875443    2567888878888899999999874    24


Q ss_pred             CCHHHHHHHHHHhc
Q 014691          177 LDITDVARVFQITV  190 (420)
Q Consensus       177 ~s~~D~~~ll~~~~  190 (420)
                      -+.+|+..+.+...
T Consensus       216 AT~edv~lmr~~v~  229 (288)
T 3oa3_A          216 ASIENVSLMSAVCD  229 (288)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            57788866666653

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=91.57  E-value=0.16  Score=49.49  Aligned_cols=39  Identities=28%  Similarity=0.357  Sum_probs=34.8

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|.+|||+|+|++|.+++..+...|+ +|++++++++|.+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~  205 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCD  205 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence            47899999999999999998999999 8999999887654

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=91.52  E-value=0.21  Score=49.77  Aligned_cols=39  Identities=26%  Similarity=0.367  Sum_probs=35.1

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|.+|||+|+|++|.+++..+...|+ +|+.++++++|.+
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  252 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRN  252 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            57899999999999999998999999 9999999887754

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=91.52  E-value=0.19  Score=48.34  Aligned_cols=36  Identities=19%  Similarity=0.312  Sum_probs=31.2

Q ss_pred             cCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ++++++||.|+ |+.|++++..|.+.|.+|++++|+.
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFF   61 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            46789999997 8899999999999999999999864

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=91.51  E-value=0.17  Score=50.22  Aligned_cols=38  Identities=26%  Similarity=0.298  Sum_probs=35.4

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+.||++.|||-|.+|++++..|..+|++|+.++|+.
T Consensus       172 ~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~  209 (365)
T 4hy3_A          172 RLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWL  209 (365)
T ss_dssp             CCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSS
T ss_pred             cccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCC
Confidence            56789999999999999999999999999999999974

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=91.48  E-value=0.19  Score=49.36  Aligned_cols=39  Identities=28%  Similarity=0.391  Sum_probs=34.5

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+...|+ +|+.++++.+|.+
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~  229 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLE  229 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHH
Confidence            47899999999999999998888999 7999999887754

>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A

Probab=91.45  E-value=4.1  Score=38.71  Aligned_cols=144  Identities=15%  Similarity=0.166  Sum_probs=91.2

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCC----CchhHHH-------HHHhhCCCcEEEEeccCCCCCCCCCCHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLKNF----NPRENIK-------TLIKESPVPTLFTYRPIWEGGQYDGDENERVD  102 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~----~~~~~l~-------~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~  102 (420)
                      +.+++++.+++..+.|||+|.+=.....+-    ...++++       .+.+..+.|+-  +-|            .+.+
T Consensus        36 ~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~piS--IDT------------~~~~  101 (282)
T 1aj0_A           36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWIS--VDT------------SKPE  101 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEE--EEC------------CCHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCeEE--EeC------------CCHH
Confidence            478899999998999999999998765221    1223333       22233466653  332            1235


Q ss_pred             HHHHHHHhCCcEE-EEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCC---------------HHHHHHHHHHHHHcC
Q 014691          103 VLRLAMELGADYI-DVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPS---------------VEDLSNLVARIQASG  166 (420)
Q Consensus       103 ll~~~~~~~~d~i-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~---------------~~el~~~~~~~~~~g  166 (420)
                      ..++|++.|+++| ||-....++..+-+.   +.+..+|+. |. +++|.               .+.+.+.++++.+.|
T Consensus       102 va~aAl~aGa~iINdvsg~~d~~~~~~~a---~~~~~vVlm-h~-~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~G  176 (282)
T 1aj0_A          102 VIRESAKVGAHIINDIRSLSEPGALEAAA---ETGLPVCLM-HM-QGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAG  176 (282)
T ss_dssp             HHHHHHHTTCCEEEETTTTCSTTHHHHHH---HHTCCEEEE-CC-SSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCEEEECCCCCCHHHHHHHH---HhCCeEEEE-cc-CCCCccccccCccchHHHHHHHHHHHHHHHHHHcC
Confidence            8889999999987 554434444444332   246677776 43 55664               566788888898888


Q ss_pred             CCEEEEEe-----ecCCHHHHHHHHHHhcc---CCCCE
Q 014691          167 ADIVKFAT-----TALDITDVARVFQITVH---SQVPI  196 (420)
Q Consensus       167 aDivKia~-----~~~s~~D~~~ll~~~~~---~~~p~  196 (420)
                      .+-=+|..     ..++.++++.+++-+..   .+.|+
T Consensus       177 i~~~~IilDPg~gf~k~~~~n~~ll~~l~~~~~~g~P~  214 (282)
T 1aj0_A          177 IAKEKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPL  214 (282)
T ss_dssp             CCGGGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCB
T ss_pred             CChhhEEEeCCCCcccCHHHHHHHHHHHHHHhcCCCCE
Confidence            54113443     35788999888886554   35564

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=91.43  E-value=0.14  Score=50.48  Aligned_cols=39  Identities=31%  Similarity=0.482  Sum_probs=34.8

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|.+|||+|+|++|.+++..+...|+ +|+.++++++|.+
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~  232 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYE  232 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            57899999999999999999999999 8999999887754

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=91.43  E-value=0.07  Score=52.68  Aligned_cols=34  Identities=15%  Similarity=0.109  Sum_probs=31.6

Q ss_pred             CEEEEEccchHHHHHHHHHHhCC-------CeEEEEeCChh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKG-------ARVVIANRTYE  415 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g-------~~i~v~nR~~~  415 (420)
                      +++.|||+|.+|.+++..|.+.|       .+|++++|+.+
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            47999999999999999999989       79999999987

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=91.42  E-value=0.14  Score=51.75  Aligned_cols=66  Identities=20%  Similarity=0.101  Sum_probs=44.0

Q ss_pred             EEEEecCHHHHHHHHHhhhccCCCCCC-CcccccCCCEEEEEcc-chHHHHHHHHHHh-CCCeEEEEeCChhh
Q 014691          347 LFGYNTDYVGAISAIEDGLRGRLNVSG-GVSSALAGKLFVVIGA-GGAGKALAYGAKA-KGARVVIANRTYEN  416 (420)
Q Consensus       347 l~G~NTD~~G~~~~l~~~~~~~~~~~~-~~~~~~~~k~vlviGa-GGaara~~~aL~~-~g~~i~v~nR~~~k  416 (420)
                      ++..++.-.|....+.+.+.    ++. .......+|.+||.|+ +|.|+|++.+|+. .|++|.+++|+.+.
T Consensus        30 ~~~~~a~p~g~~~~v~~qi~----y~~~~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~   98 (422)
T 3s8m_A           30 FICTTTHPLGCERNVLEQIA----ATRARGVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPG   98 (422)
T ss_dssp             --CCCCCHHHHHHHHHHHHH----HHHHTCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCC
T ss_pred             eeeecCCchhHHHHHHHHHH----HHhhccccccCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchh
Confidence            45556666676666654421    000 0001124789999996 6899999999999 99999999987654

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=91.39  E-value=1.4  Score=40.66  Aligned_cols=68  Identities=15%  Similarity=0.219  Sum_probs=50.5

Q ss_pred             CCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEe-cC-C-CCCCc-hhHHHHHHhhC-CCcEEEEecc
Q 014691           19 MRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRL-DG-L-KNFNP-RENIKTLIKES-PVPTLFTYRP   86 (420)
Q Consensus        19 ~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRl-D~-l-~~~~~-~~~l~~l~~~~-~~PiI~T~R~   86 (420)
                      |...+++|+-+|..-|..++.++++.+.+.|+|++.+++ |- | ++..- .+.++.+++.+ +.|+.+.+-.
T Consensus         1 ~~~~~~~i~pSila~D~~~l~~~i~~~~~~g~d~iHvDvmDg~fvpn~t~G~~~v~~lr~~~p~~~~dvhLmv   73 (227)
T 1tqx_A            1 MGTLKAIIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMV   73 (227)
T ss_dssp             ---CCCEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEES
T ss_pred             CCCCCCeEEeehhcCChhhHHHHHHHHHHcCCCEEEEEEEeCCcCcchhcCHHHHHHHHHhCCCCcEEEEEEE
Confidence            345678899999999999999999998888999998887 42 2 33221 34677787777 7888888764

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=91.35  E-value=0.57  Score=44.88  Aligned_cols=85  Identities=16%  Similarity=0.140  Sum_probs=59.9

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCC-EEEEEec--------CCCCCCc---hhHHHHHHhhCCCcEEEEeccCCCCCCC
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGAD-LVEIRLD--------GLKNFNP---RENIKTLIKESPVPTLFTYRPIWEGGQY   93 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D-~vElRlD--------~l~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~   93 (420)
                      +.+.|.+.+.++..+-++.+.+.|+| .||+-+-        .|.. ++   .+.++.+++..++|+++-+|..      
T Consensus        96 ~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~-~~e~~~~iv~~vr~~~~~Pv~vKi~~~------  168 (311)
T 1jub_A           96 IFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAY-DFEATEKLLKEVFTFFTKPLGVKLPPY------  168 (311)
T ss_dssp             CEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGG-CHHHHHHHHHHHTTTCCSCEEEEECCC------
T ss_pred             EEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccC-CHHHHHHHHHHHHHhcCCCEEEEECCC------
Confidence            45678899999999999888888999 9999653        1110 11   1234444445588999887732      


Q ss_pred             CCCHHHHHHHHHHHHHhCCcEEEEE
Q 014691           94 DGDENERVDVLRLAMELGADYIDVE  118 (420)
Q Consensus        94 ~~~~~~~~~ll~~~~~~~~d~iDiE  118 (420)
                       .+.++..++.+.+.+.|+|+|.+-
T Consensus       169 -~~~~~~~~~a~~~~~~G~d~i~v~  192 (311)
T 1jub_A          169 -FDLVHFDIMAEILNQFPLTYVNSV  192 (311)
T ss_dssp             -CSHHHHHHHHHHHTTSCCCEEEEC
T ss_pred             -CCHHHHHHHHHHHHHcCCcEEEec
Confidence             255666677888888899999874

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=91.32  E-value=0.19  Score=53.65  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=30.9

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ...|+|||+|.+|.++++.|++.|.+|+|+.+.
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~  304 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRRGWQVTLYCAD  304 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            368999999999999999999999999999985

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=91.32  E-value=0.2  Score=48.36  Aligned_cols=37  Identities=19%  Similarity=0.172  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .++++++||.|+ |+.|++++..|.+.|.+|++++|+.
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   61 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            456789999998 8899999999999999999999964

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=91.30  E-value=0.24  Score=48.90  Aligned_cols=39  Identities=33%  Similarity=0.400  Sum_probs=34.8

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+|++|.+++..+...|+ +|+.+.|+.+|.+
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  234 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLK  234 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHH
Confidence            47899999999999999998999995 9999999987754

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=91.27  E-value=0.14  Score=49.39  Aligned_cols=38  Identities=24%  Similarity=0.240  Sum_probs=33.0

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC--hhhhh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT--YENLQ  418 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~--~~ka~  418 (420)
                      .+++.|||+|-+|.+++..|.+.|. +|+++||+  .++.+
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~   64 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRP   64 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHH
Confidence            4689999999999999999999999 99999997  35443

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=91.25  E-value=0.15  Score=49.39  Aligned_cols=34  Identities=24%  Similarity=0.355  Sum_probs=31.9

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCC-CeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKG-ARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g-~~i~v~nR~~  414 (420)
                      .+++.|||+|-+|.+++..|.+.| .+|+++||+.
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            368999999999999999999999 7999999997

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=91.22  E-value=0.12  Score=53.94  Aligned_cols=35  Identities=17%  Similarity=0.224  Sum_probs=32.1

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      +++.+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus        30 L~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D   65 (531)
T 1tt5_A           30 LESAHVCLINATATGTEILKNLVLPGIGSFTIIDGN   65 (531)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCC
T ss_pred             HhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            456799999999999999999999999 99999965

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=91.20  E-value=0.2  Score=49.00  Aligned_cols=39  Identities=21%  Similarity=0.249  Sum_probs=34.9

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~--~i~v~nR~~~ka~  418 (420)
                      ..+++.|+|+|.+|.++++.|+..|.  +|.+++++.++++
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~   60 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLK   60 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHH
Confidence            35789999999999999999999896  8999999988765

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*

Probab=91.19  E-value=15  Score=38.02  Aligned_cols=201  Identities=15%  Similarity=0.071  Sum_probs=119.3

Q ss_pred             HHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 014691           42 MGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGAD  113 (420)
Q Consensus        42 ~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d  113 (420)
                      ++.+...|.+.||.=    .|.   +-..++.+.++.+++.. +.++..-+|..+--|.....++-....++.+.+.|++
T Consensus        53 a~~L~~~Gv~~IE~G~patF~~~~rfl~~d~~e~lr~l~~~~~~~~l~~L~R~~N~~G~~~ypddv~~~~ve~a~~aGvd  132 (539)
T 1rqb_A           53 CADIDAAGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMD  132 (539)
T ss_dssp             HHHHHHTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCCEEEeCcccccccchhccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccCcccccHHHHHHHHhCCCC
Confidence            334445799999985    332   11234455676666542 4555555676555565444555556678889999999


Q ss_pred             EEEEEccccc-chhHHHh-hcCCCCcEE--EEEcccCCCCC-CHHHHHHHHHHHHHcCCCEEEEEeec--CCHHHHHHHH
Q 014691          114 YIDVELQVAR-EFNDSIR-GKKPEKCKV--IVSSHNYQYTP-SVEDLSNLVARIQASGADIVKFATTA--LDITDVARVF  186 (420)
Q Consensus       114 ~iDiEl~~~~-~~~~~l~-~~~~~~~ki--I~S~H~f~~tP-~~~el~~~~~~~~~~gaDivKia~~~--~s~~D~~~ll  186 (420)
                      .|-|=....+ +.+.... ..+..+..+  -+|+-+.  ++ +.+.+.+..+++.+.|||++-|+=|.  -++.++.++.
T Consensus       133 ~vrIf~s~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~--~~~~~e~~~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv  210 (539)
T 1rqb_A          133 VFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTIS--PVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDII  210 (539)
T ss_dssp             EEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCS--TTCCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHH
T ss_pred             EEEEEEehhHHHHHHHHHHHHHHCCCeEEEEEEeeeC--CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCcCHHHHHHHH
Confidence            9887433221 1122222 233445555  3555432  33 56789999999999999999998665  4688888888


Q ss_pred             HHhcc-C--CCCEEEE--ecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691          187 QITVH-S--QVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (420)
Q Consensus       187 ~~~~~-~--~~p~I~~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~  245 (420)
                      +.+.. .  +.|+-..  +.--.+...=+.+-.-|....=+++..- .-..||+++.++...++
T Consensus       211 ~~l~~~~p~~i~I~~H~Hnd~GlAvAN~laAveAGa~~VD~ti~g~-GertGN~~lE~lv~~L~  273 (539)
T 1rqb_A          211 KAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISSM-SLGPGHNPTESVAEMLE  273 (539)
T ss_dssp             HHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCSEEEEBCGGG-CSTTSBCBHHHHHHHTT
T ss_pred             HHHHHhcCCCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEecccc-CCCccChhHHHHHHHHH
Confidence            76543 2  4565543  4444555555555555554433444421 12367777776655544

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=91.17  E-value=5  Score=37.57  Aligned_cols=123  Identities=19%  Similarity=0.152  Sum_probs=74.3

Q ss_pred             HHHHhhhhcCCCEEEEEecCCCCCCchh---HHHHHH---hhCCCcEEEEeccCCCCCCCC--CCHHHHHHHHHHHHHhC
Q 014691           40 VDMGKANASGADLVEIRLDGLKNFNPRE---NIKTLI---KESPVPTLFTYRPIWEGGQYD--GDENERVDVLRLAMELG  111 (420)
Q Consensus        40 ~~~~~~~~~~~D~vElRlD~l~~~~~~~---~l~~l~---~~~~~PiI~T~R~~~eGG~~~--~~~~~~~~ll~~~~~~~  111 (420)
                      .+++++++.|+|.|-+|+..=. .+..+   .++.+.   +...+|+|+....  +|....  .++++-.+..+.+.+.|
T Consensus        96 ~~ve~Ai~~Ga~~v~~~~nig~-~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~--~G~~~~~~~s~~~i~~a~~~a~~~G  172 (263)
T 1w8s_A           96 CSVEEAVSLGASAVGYTIYPGS-GFEWKMFEELARIKRDAVKFDLPLVVESFP--RGGKVVNETAPEIVAYAARIALELG  172 (263)
T ss_dssp             SCHHHHHHTTCSEEEEEECTTS-TTHHHHHHHHHHHHHHHHHHTCCEEEEECC--CSTTCCCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCEEEEEEecCC-cCHHHHHHHHHHHHHHHHHcCCeEEEEeeC--CCCccccCCCHHHHHHHHHHHHHcC
Confidence            3455666789999999984332 22222   233333   2347898888543  343322  14555555567888999


Q ss_pred             CcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCC--CHHHHHHHHHHHHHcCCCEE
Q 014691          112 ADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTP--SVEDLSNLVARIQASGADIV  170 (420)
Q Consensus       112 ~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP--~~~el~~~~~~~~~~gaDiv  170 (420)
                      +|||=+......+.++.+...- +.++|++|=    +-.  +.++..+.+....+.||+-+
T Consensus       173 AD~vkt~~~~~~e~~~~~~~~~-~~~pV~asG----Gi~~~~~~~~l~~i~~~~~aGA~Gv  228 (263)
T 1w8s_A          173 ADAMKIKYTGDPKTFSWAVKVA-GKVPVLMSG----GPKTKTEEDFLKQVEGVLEAGALGI  228 (263)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHT-TTSCEEEEC----CSCCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEcCCCCHHHHHHHHHhC-CCCeEEEEe----CCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            9999999643334555555322 223565552    222  56788888888888999843

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=91.13  E-value=0.19  Score=48.36  Aligned_cols=36  Identities=17%  Similarity=0.146  Sum_probs=32.3

Q ss_pred             cCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..++++||.|+ |+.|++++..|.+.|.+|+++.|+.
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   59 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFS   59 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            45789999996 7799999999999999999999954

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=91.07  E-value=0.16  Score=51.07  Aligned_cols=34  Identities=35%  Similarity=0.529  Sum_probs=31.1

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      ..|+|||+|.+|.++|+.|++.|.+|+|+.|...
T Consensus        28 ~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~   61 (417)
T 3v76_A           28 QDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARA   61 (417)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            4799999999999999999999999999998753

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=91.03  E-value=0.21  Score=52.58  Aligned_cols=35  Identities=26%  Similarity=0.400  Sum_probs=32.0

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      .....|+|||+|.+|.++|+.|++.|.+|+|+.|.
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~   55 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERS   55 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCC
Confidence            34578999999999999999999999999999986

>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*

Probab=91.00  E-value=3.9  Score=38.58  Aligned_cols=139  Identities=14%  Similarity=0.177  Sum_probs=85.1

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhH----HHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN----IKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAME  109 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~----l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~  109 (420)
                      +.+++++.+++..+.|||+|-+-...-.. +..+.    ++.+.+..+.|+.+-  |.            +.+.++++++
T Consensus        32 ~~~~a~~~a~~~v~~GAdiIDIg~~s~~~-eE~~rv~~vi~~l~~~~~~pisID--T~------------~~~v~~aal~   96 (271)
T 2yci_X           32 DPRPIQEWARRQAEKGAHYLDVNTGPTAD-DPVRVMEWLVKTIQEVVDLPCCLD--ST------------NPDAIEAGLK   96 (271)
T ss_dssp             CCHHHHHHHHHHHHTTCSEEEEECCSCSS-CHHHHHHHHHHHHHHHCCCCEEEE--CS------------CHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEcCCcCch-hHHHHHHHHHHHHHHhCCCeEEEe--CC------------CHHHHHHHHH
Confidence            56888888888889999999999988332 22222    334444457886443  21            3358888999


Q ss_pred             h--CCcEE-EEEcccc--cchhHHHhhcCCCCcEEEEEcccCCCCCC-----HHHHHHHHHHHHHcCCCEEEEEe-----
Q 014691          110 L--GADYI-DVELQVA--REFNDSIRGKKPEKCKVIVSSHNYQYTPS-----VEDLSNLVARIQASGADIVKFAT-----  174 (420)
Q Consensus       110 ~--~~d~i-DiEl~~~--~~~~~~l~~~~~~~~kiI~S~H~f~~tP~-----~~el~~~~~~~~~~gaDivKia~-----  174 (420)
                      .  |+++| ||-....  ++....+   .+.+..+|+.+-+-+++|.     .+.+.+.++.+.+.|.+-=+|..     
T Consensus        97 a~~Ga~iINdvs~~~d~~~~~~~~~---a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~g  173 (271)
T 2yci_X           97 VHRGHAMINSTSADQWKMDIFFPMA---KKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAHGIPMTELYIDPLIL  173 (271)
T ss_dssp             HCCSCCEEEEECSCHHHHHHHHHHH---HHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCC
T ss_pred             hCCCCCEEEECCCCccccHHHHHHH---HHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCC
Confidence            8  98877 5755432  2232222   2346788887544466775     34466677777778754111322     


Q ss_pred             e-cCCHHHHHHHHHHhc
Q 014691          175 T-ALDITDVARVFQITV  190 (420)
Q Consensus       175 ~-~~s~~D~~~ll~~~~  190 (420)
                      . .++.++++.+++.+.
T Consensus       174 figk~~~~~~~~l~~l~  190 (271)
T 2yci_X          174 PVNVAQEHAVEVLETIR  190 (271)
T ss_dssp             CTTTSTHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHH
Confidence            2 456677766666543

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=90.92  E-value=0.23  Score=48.59  Aligned_cols=39  Identities=23%  Similarity=0.308  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCC-CeEEEEeCChhh
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKG-ARVVIANRTYEN  416 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g-~~i~v~nR~~~k  416 (420)
                      .++++++||.|+ |+.|++++..|.+.| .+|++++|+.++
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   69 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSA   69 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCC
Confidence            467899999996 889999999999999 899999997654

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=90.92  E-value=0.19  Score=48.63  Aligned_cols=38  Identities=18%  Similarity=0.500  Sum_probs=30.6

Q ss_pred             cCCCEEEEEcc-chHHHHHHHHHHhCC-CeEEEEeCChhh
Q 014691          379 LAGKLFVVIGA-GGAGKALAYGAKAKG-ARVVIANRTYEN  416 (420)
Q Consensus       379 ~~~k~vlviGa-GGaara~~~aL~~~g-~~i~v~nR~~~k  416 (420)
                      ++++++||.|+ |+.|++++..|.+.| .+|+++.|+..+
T Consensus        44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   83 (357)
T 2x6t_A           44 IEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG   83 (357)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSG
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCc
Confidence            46789999997 889999999999999 699999997543

>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}

Probab=90.90  E-value=5.1  Score=38.67  Aligned_cols=146  Identities=16%  Similarity=0.235  Sum_probs=88.5

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecCCCC-CC-------chhHHH-------HHHhhCCCcEEEEeccCCCCCCCCCCH
Q 014691           33 ESVDKMVVDMGKANASGADLVEIRLDGLKN-FN-------PRENIK-------TLIKESPVPTLFTYRPIWEGGQYDGDE   97 (420)
Q Consensus        33 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~-~~-------~~~~l~-------~l~~~~~~PiI~T~R~~~eGG~~~~~~   97 (420)
                      .+.+++++.+++..+.|||+|.+=...-.+ ..       ..++++       .+.+..+.||  .+-|           
T Consensus        46 ~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vpI--SIDT-----------  112 (314)
T 3tr9_A           46 LDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFPQLI--SVDT-----------  112 (314)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHCCSEE--EEEC-----------
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhCCCeE--EEeC-----------
Confidence            467889999999899999999998765432 11       122333       2223345554  3333           


Q ss_pred             HHHHHHHHHHHHhCCcEE-EEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCC--------------HHHHHHHHHHH
Q 014691           98 NERVDVLRLAMELGADYI-DVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPS--------------VEDLSNLVARI  162 (420)
Q Consensus        98 ~~~~~ll~~~~~~~~d~i-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~--------------~~el~~~~~~~  162 (420)
                       .+.+..++|++.|+++| ||-....++..+.+.   +.+..+|+. | .+++|.              .+.+.+.++++
T Consensus       113 -~~~~Va~aAl~aGa~iINDVsg~~~~~m~~v~a---~~g~~vVlM-h-~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a  186 (314)
T 3tr9_A          113 -SRPRVMREAVNTGADMINDQRALQLDDALTTVS---ALKTPVCLM-H-FPSETRKPGSTTHFYFLQSVKKELQESIQRC  186 (314)
T ss_dssp             -SCHHHHHHHHHHTCCEEEETTTTCSTTHHHHHH---HHTCCEEEE-C-CCCTTCCTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHcCCCEEEECCCCCchHHHHHHH---HhCCeEEEE-C-CCCCCcccccccccchHHHHHHHHHHHHHHH
Confidence             12357888999998877 443333333333332   246678875 4 345553              24467778888


Q ss_pred             HHcCCCEEEEE-----e---ecCCHHHHHHHHHHhc---cCCCCEE
Q 014691          163 QASGADIVKFA-----T---TALDITDVARVFQITV---HSQVPII  197 (420)
Q Consensus       163 ~~~gaDivKia-----~---~~~s~~D~~~ll~~~~---~~~~p~I  197 (420)
                      .+.|.+-=+|.     .   ..++.++++.+++-+.   ..+.|+.
T Consensus       187 ~~~GI~~~~IilDPG~G~~~F~Kt~~~n~~lL~~l~~l~~lg~PvL  232 (314)
T 3tr9_A          187 KKAGISEDRIIIDPGFGQGNYGKNVSENFYLLNKLPEFVAMGLPVL  232 (314)
T ss_dssp             HHTTCCGGGEEEECCCCSGGGCCCHHHHHHHHHTTHHHHTTSSCBE
T ss_pred             HHcCCCHhHEEEeCCCCchhhcCCHHHHHHHHHHHHHHhcCCCCEE
Confidence            88996422333     3   5688899988887643   3466743

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=90.89  E-value=0.2  Score=50.48  Aligned_cols=39  Identities=23%  Similarity=0.287  Sum_probs=34.6

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+ ||+|.+++..+...|++++++.++.+|.+
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~  259 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEA  259 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            5889999998 99999999999999998888889887754

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=90.88  E-value=0.16  Score=54.84  Aligned_cols=38  Identities=21%  Similarity=0.228  Sum_probs=34.8

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      -++|.|||+|-+|.+++..|+..|.+|+++||++++++
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~  349 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLE  349 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHH
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHH
Confidence            36799999999999999999999999999999988764

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=90.86  E-value=0.37  Score=48.87  Aligned_cols=52  Identities=23%  Similarity=0.337  Sum_probs=41.8

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEE-EEeC
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANR  412 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~-v~nR  412 (420)
                      ++|.+.++++.+..       .+.+++|++|+|.|.|.+|+.++.-|.++|++|+ |.++
T Consensus       215 g~Gv~~~~~~~~~~-------~g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~  267 (440)
T 3aog_A          215 GRGVFITAAAAAEK-------IGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDH  267 (440)
T ss_dssp             HHHHHHHHHHHHHH-------HTCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             HHHHHHHHHHHHHh-------cCCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcC
Confidence            67777777666542       1257889999999999999999999999999654 8877

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=90.81  E-value=0.14  Score=55.85  Aligned_cols=34  Identities=26%  Similarity=0.353  Sum_probs=32.0

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      ++.+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus       410 ~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d  444 (805)
T 2nvu_B          410 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD  444 (805)
T ss_dssp             HTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECC
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCC
Confidence            57899999999999999999999999 99999975

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=90.77  E-value=0.3  Score=47.15  Aligned_cols=39  Identities=28%  Similarity=0.388  Sum_probs=33.0

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|.+|+|+|+||++..++..++.+|. +|+.++++++|.+
T Consensus       163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~  202 (348)
T 4eez_A          163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLN  202 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHH
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhh
Confidence            47899999999999888888877754 9999999988754

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=90.74  E-value=0.24  Score=48.26  Aligned_cols=35  Identities=29%  Similarity=0.240  Sum_probs=31.5

Q ss_pred             CEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       382 k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      |++||.|+ |+.|++++..|.+.|.+|++++|+.++
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~   64 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSN   64 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCcc
Confidence            68999997 889999999999999999999997653

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=90.71  E-value=0.28  Score=47.62  Aligned_cols=39  Identities=38%  Similarity=0.597  Sum_probs=34.8

Q ss_pred             CCCEEEEE-ccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVI-GAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlvi-GaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+ |+|++|.+++..+...|++|+++.++.++.+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~  189 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIE  189 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            58899999 6899999999999999999999999887754

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=90.70  E-value=3.5  Score=36.60  Aligned_cols=102  Identities=21%  Similarity=0.228  Sum_probs=57.5

Q ss_pred             HHHHHHHhhhhcCCCEEEEEecCCCCCCch---hHHHHH---HhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHh
Q 014691           37 KMVVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTL---IKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL  110 (420)
Q Consensus        37 e~~~~~~~~~~~~~D~vElRlD~l~~~~~~---~~l~~l---~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~  110 (420)
                      +..+.++.+.+.|+|+|++|.-.   .+..   +.++.+   .+..+.|+++.               +   .++.+.+.
T Consensus        27 ~~~~~~~~~~~~G~~~i~l~~~~---~~~~~~~~~~~~l~~~~~~~~v~v~v~---------------~---~~~~a~~~   85 (215)
T 1xi3_A           27 PEVESVREALEGGATAIQMRIKN---APTREMYEIGKTLRQLTREYDALFFVD---------------D---RVDVALAV   85 (215)
T ss_dssp             CHHHHHHHHHHTTCSEEEECCCS---CCHHHHHHHHHHHHHHHHHTTCEEEEE---------------S---CHHHHHHH
T ss_pred             hHHHHHHHHHHCCCCEEEECCCC---CCHHHHHHHHHHHHHHHHHcCCeEEEc---------------C---hHHHHHHc
Confidence            55566666677899999999522   2221   122222   23356777763               1   12356677


Q ss_pred             CCcEEEEEcc-cccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 014691          111 GADYIDVELQ-VAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA  173 (420)
Q Consensus       111 ~~d~iDiEl~-~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia  173 (420)
                      |+|+|=++.. .+.+..+.+   . .+..+.++.|    ||  +|+    .++.+.|+|++++-
T Consensus        86 gad~v~l~~~~~~~~~~~~~---~-~~~~~~v~~~----t~--~e~----~~~~~~g~d~i~~~  135 (215)
T 1xi3_A           86 DADGVQLGPEDMPIEVAKEI---A-PNLIIGASVY----SL--EEA----LEAEKKGADYLGAG  135 (215)
T ss_dssp             TCSEEEECTTSCCHHHHHHH---C-TTSEEEEEES----SH--HHH----HHHHHHTCSEEEEE
T ss_pred             CCCEEEECCccCCHHHHHHh---C-CCCEEEEecC----CH--HHH----HHHHhcCCCEEEEc
Confidence            9999966532 222222222   2 3556667776    22  343    23456799999874

>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*

Probab=90.68  E-value=2.4  Score=40.06  Aligned_cols=161  Identities=14%  Similarity=0.184  Sum_probs=95.6

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecCCC----CCCchhHHHHHH---hh-CCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691           33 ESVDKMVVDMGKANASGADLVEIRLDGLK----NFNPRENIKTLI---KE-SPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (420)
Q Consensus        33 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~l~~l~---~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (420)
                      .+.+++++++++..+.|||+|.+=--.-.    ..+..+++++++   +. ....+.+.+-|.            +-+..
T Consensus        27 ~~~~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~vs~eeE~~Rv~pvi~~l~~~~v~iSIDT~------------~~~Va   94 (270)
T 4hb7_A           27 NNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVGFDVKISVDTF------------RSEVA   94 (270)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEEEEECS------------CHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCchHHHHHHHHHHHHHhhcCCCeEEEECC------------CHHHH
Confidence            35678888899988999999988433221    122334454432   21 122345555542            33578


Q ss_pred             HHHHHhCCcEEE-EE-cccccchhHHHhhcCCCCcEEEEEcccCCCCCCH----HH----HHHHHHHHHHcCCCEEEEEe
Q 014691          105 RLAMELGADYID-VE-LQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSV----ED----LSNLVARIQASGADIVKFAT  174 (420)
Q Consensus       105 ~~~~~~~~d~iD-iE-l~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~----~e----l~~~~~~~~~~gaDivKia~  174 (420)
                      ++|++.|+++|- |- ...+++..+.+.   ..+..+|+- |. +++|..    +|    +.+.++++.+.|.+-=+|..
T Consensus        95 ~~al~aGa~iINDVs~g~~d~~m~~~va---~~~~~~vlM-H~-~~~p~~~~vv~ev~~~l~~~i~~a~~aGI~~~~Iil  169 (270)
T 4hb7_A           95 EACLKLGVDMINDQWAGLYDHRMFQIVA---KYDAEIILM-HN-GNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWL  169 (270)
T ss_dssp             HHHHHHTCCEEEETTTTSSCTHHHHHHH---HTTCEEEEE-CC-CSSCCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             HHHHHhccceeccccccccchhHHHHHH---HcCCCeEEe-cc-ccCCccccchhHHHHHHHHHHHHHHHcCCCCceEEE
Confidence            899999999874 43 233444444333   246788876 43 455533    22    45556677788865445666


Q ss_pred             ec-----CCHHHHHHHHHHhc---cCCCCEEEEecCCcchhhhhh
Q 014691          175 TA-----LDITDVARVFQITV---HSQVPIIGLVMGERGLISRIL  211 (420)
Q Consensus       175 ~~-----~s~~D~~~ll~~~~---~~~~p~I~~~MG~~G~~SRi~  211 (420)
                      =|     ++.++++.|++-+.   ..+.|+ .++......+..++
T Consensus       170 DPGiGFgKt~~~N~~ll~~l~~~~~lg~Pv-LvG~SRKsfig~~l  213 (270)
T 4hb7_A          170 DPGIGFAKTRNEEAEVMARLDELVATEYPV-LLATSRKRFTKEMM  213 (270)
T ss_dssp             ECCTTSSCCHHHHHHHHTCHHHHHTTCSCB-EECCTTSHHHHHHH
T ss_pred             eCCCCcccccccHHHHHhhHHHHhcCCCCE-EEEecHHHHHHHHh
Confidence            54     78999999886543   346773 45555555444444

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=90.65  E-value=0.4  Score=48.41  Aligned_cols=52  Identities=23%  Similarity=0.379  Sum_probs=41.5

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEE-EEeC
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANR  412 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~-v~nR  412 (420)
                      ++|.+.++++.+..       .+.+++|++++|.|.|.+|+.++.-|.++|++|+ |.+.
T Consensus       190 g~Gv~~~~~~~~~~-------~g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~  242 (421)
T 1v9l_A          190 GFGVAVATREMAKK-------LWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI  242 (421)
T ss_dssp             HHHHHHHHHHHHHH-------HHSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             HHHHHHHHHHHHHh-------cCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECC
Confidence            57777776665542       1357899999999999999999999999999654 8777

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=90.64  E-value=0.2  Score=50.77  Aligned_cols=38  Identities=13%  Similarity=0.041  Sum_probs=34.3

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      -.++.|||+|-+|.+++..|++ |.+|++++|++++++.
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~   73 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDM   73 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhH
Confidence            3589999999999999999988 9999999999998764

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=90.59  E-value=0.27  Score=48.92  Aligned_cols=34  Identities=26%  Similarity=0.289  Sum_probs=31.5

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      +.++|+|||||-+|.++++.|.+.|.+|+|+.++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~   76 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN   76 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            4679999999999999999999999999999876

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=90.58  E-value=0.23  Score=46.88  Aligned_cols=33  Identities=33%  Similarity=0.501  Sum_probs=30.2

Q ss_pred             CEEEEEccchHHHHHHHHHHhC-CCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAK-GARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~-g~~i~v~nR~~  414 (420)
                      ..|+|||+|.+|.++++.|++. |.+|+|+.|..
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~   73 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   73 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4799999999999999999997 99999999864

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=90.57  E-value=0.19  Score=53.73  Aligned_cols=33  Identities=21%  Similarity=0.238  Sum_probs=30.7

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ...|+|||+|.+|.++++.|++.|.+|+|+.+.
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~  296 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCAD  296 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCC
Confidence            357999999999999999999999999999985

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=90.51  E-value=0.18  Score=54.49  Aligned_cols=38  Identities=26%  Similarity=0.456  Sum_probs=34.9

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      -++|.|||+|-+|.+++..|+..|.+|+++||++++++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~  351 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIE  351 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHH
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHH
Confidence            46799999999999999999999999999999988765

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=90.50  E-value=4.9  Score=37.61  Aligned_cols=158  Identities=20%  Similarity=0.212  Sum_probs=94.2

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCC-CCCch-hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH---HHHHHH
Q 014691           32 GESVDKMVVDMGKANASGADLVEIRLDGLK-NFNPR-ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER---VDVLRL  106 (420)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~---~~ll~~  106 (420)
                      ..+++++..    +.+.|||-|||.-++-. ...|. ..++.+++..++|+.+-+|.+  ||-|-.++++.   .+=++.
T Consensus         8 ~~s~~~a~~----A~~~GAdRIELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR--~GdF~Ys~~E~~~M~~Di~~   81 (256)
T 1twd_A            8 CYSMECALT----AQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPR--GGDFCYSDGEFAAILEDVRT   81 (256)
T ss_dssp             ESSHHHHHH----HHHTTCSEEEECBCGGGTCBCCCHHHHHHHHHHCCSCEEEBCCSS--SSCSCCCHHHHHHHHHHHHH
T ss_pred             eCCHHHHHH----HHHcCCCEEEEcCCcccCCCCCCHHHHHHHHHHcCCceEEEECCC--CCCCcCCHHHHHHHHHHHHH
Confidence            566666653    45679999999988643 33442 245566667899999999953  45566666443   333556


Q ss_pred             HHHhCCcEEEEE-----cccccchhHHHhhcCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEee--cCC
Q 014691          107 AMELGADYIDVE-----LQVAREFNDSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATT--ALD  178 (420)
Q Consensus       107 ~~~~~~d~iDiE-----l~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tP~~~el~~~~~~~~~~gaDivKia~~--~~s  178 (420)
                      +.++|+|-|=+=     -..+.+..++|... .++..  +.||- |+.+++..   +-++.+.++|.|  +|-+.  +.+
T Consensus        82 ~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~-a~~~~--vTFHRAfD~~~d~~---~ale~L~~lG~~--rILTSG~~~~  153 (256)
T 1twd_A           82 VRELGFPGLVTGVLDVDGNVDMPRMEKIMAA-AGPLA--VTFHRAFDMCANPL---YTLNNLAELGIA--RVLTSGQKSD  153 (256)
T ss_dssp             HHHTTCSEEEECCBCTTSSBCHHHHHHHHHH-HTTSE--EEECGGGGGCSCHH---HHHHHHHHHTCC--EEEECTTSSS
T ss_pred             HHHcCCCEEEEeeECCCCCcCHHHHHHHHHH-hCCCc--EEEECchhccCCHH---HHHHHHHHcCCC--EEECCCCCCC
Confidence            777888876542     22344556666643 23445  46775 88887654   447777777855  33343  455


Q ss_pred             HHHHHHHHHHh-ccCCCCEEEEecCC
Q 014691          179 ITDVARVFQIT-VHSQVPIIGLVMGE  203 (420)
Q Consensus       179 ~~D~~~ll~~~-~~~~~p~I~~~MG~  203 (420)
                      ..|.+.+++-+ ..++...|..+-|-
T Consensus       154 a~~g~~~L~~Lv~~a~~i~Im~GgGv  179 (256)
T 1twd_A          154 ALQGLSKIMELIAHRDAPIIMAGAGV  179 (256)
T ss_dssp             TTTTHHHHHHHHTSSSCCEEEEESSC
T ss_pred             HHHHHHHHHHHHHhhCCcEEEecCCc
Confidence            55655555433 33343444444444

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=90.49  E-value=1.1  Score=40.73  Aligned_cols=125  Identities=16%  Similarity=0.185  Sum_probs=66.2

Q ss_pred             HHHHHHHhhhhcCCCEEEEEecCCCCC-Cc---hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 014691           37 KMVVDMGKANASGADLVEIRLDGLKNF-NP---RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA  112 (420)
Q Consensus        37 e~~~~~~~~~~~~~D~vElRlD~l~~~-~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~  112 (420)
                      +....++.+.+.|+|.++++ |.-... ..   .+.++.+.+..++|+++.      ||. . +.+.    .+.+++.|+
T Consensus        34 ~~~~~a~~~~~~G~d~i~v~-~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~------g~i-~-~~~~----~~~~~~~Ga  100 (253)
T 1h5y_A           34 DPVEMAVRYEEEGADEIAIL-DITAAPEGRATFIDSVKRVAEAVSIPVLVG------GGV-R-SLED----ATTLFRAGA  100 (253)
T ss_dssp             CHHHHHHHHHHTTCSCEEEE-ECCCCTTTHHHHHHHHHHHHHHCSSCEEEE------SSC-C-SHHH----HHHHHHHTC
T ss_pred             cHHHHHHHHHHcCCCEEEEE-eCCccccCCcccHHHHHHHHHhcCCCEEEE------CCC-C-CHHH----HHHHHHcCC
Confidence            44555556667799999997 432211 11   234556666678999974      222 1 2222    245566799


Q ss_pred             cEEEEEccc--ccchhHHHhhcCC-CCcEEEEEccc-----CCCCC-----CHHHHHHHHHHHHHcCCCEEEEEe
Q 014691          113 DYIDVELQV--AREFNDSIRGKKP-EKCKVIVSSHN-----YQYTP-----SVEDLSNLVARIQASGADIVKFAT  174 (420)
Q Consensus       113 d~iDiEl~~--~~~~~~~l~~~~~-~~~kiI~S~H~-----f~~tP-----~~~el~~~~~~~~~~gaDivKia~  174 (420)
                      |.|.+-...  ..++..++..... ....+-++.+.     .-.++     +..+..+.++.+.+.|+|.+.+-.
T Consensus       101 d~V~i~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~  175 (253)
T 1h5y_A          101 DKVSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTS  175 (253)
T ss_dssp             SEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEE
T ss_pred             CEEEEChHHhhCcHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEec
Confidence            999975432  2333333332111 11233333331     00000     112345667777888999998754

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=90.46  E-value=5.8  Score=36.74  Aligned_cols=143  Identities=17%  Similarity=0.149  Sum_probs=86.9

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (420)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~  111 (420)
                      ..+.+++.+-++++.+.+++.|=+.--+.      ......++.+++++- |+=.-..|-   .+.+.+..-.+.|++.|
T Consensus        39 ~~t~~~i~~lc~eA~~~~~~aVcV~p~~v------~~a~~~L~~s~v~v~-tVigFP~G~---~~~~~Kv~Ea~~Ai~~G  108 (239)
T 3ngj_A           39 DATEEQIRKLCSEAAEYKFASVCVNPTWV------PLCAELLKGTGVKVC-TVIGFPLGA---TPSEVKAYETKVAVEQG  108 (239)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHTTSSCEEE-EEESTTTCC---SCHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHhcCCcEEEECHHHH------HHHHHHhCCCCCeEE-EEeccCCCC---CchHHHHHHHHHHHHcC
Confidence            34677888878888777777665433221      223334444454443 443222222   13466676778899999


Q ss_pred             CcEEEEEccccc-------chhHHH---hh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe----ec
Q 014691          112 ADYIDVELQVAR-------EFNDSI---RG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT----TA  176 (420)
Q Consensus       112 ~d~iDiEl~~~~-------~~~~~l---~~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~----~~  176 (420)
                      +|-||+=++...       .+.+++   .. .+..-.|+|+---.    .+.+++....+-..+.|||+||--+    -.
T Consensus       109 AdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~----Lt~eei~~a~~ia~~aGADfVKTSTGf~~gg  184 (239)
T 3ngj_A          109 AEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECCY----LTNEEKVEVCKRCVAAGAEYVKTSTGFGTHG  184 (239)
T ss_dssp             CSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGG----SCHHHHHHHHHHHHHHTCSEEECCCSSSSCC
T ss_pred             CCEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEEecCC----CCHHHHHHHHHHHHHHCcCEEECCCCCCCCC
Confidence            999999776531       122333   22 22234788875442    2567787777888889999999883    23


Q ss_pred             CCHHHHHHHHHH
Q 014691          177 LDITDVARVFQI  188 (420)
Q Consensus       177 ~s~~D~~~ll~~  188 (420)
                      .+++|+..+.+.
T Consensus       185 At~~dv~lmr~~  196 (239)
T 3ngj_A          185 ATPEDVKLMKDT  196 (239)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHh
Confidence            577888666553

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=90.33  E-value=0.19  Score=50.91  Aligned_cols=39  Identities=26%  Similarity=0.303  Sum_probs=34.4

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+|+ |++|.+++..+...|++++++.++.+|.+
T Consensus       228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~  267 (456)
T 3krt_A          228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAE  267 (456)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHH
Confidence            5789999998 99999999999999998888888887765

>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*

Probab=90.32  E-value=3.4  Score=39.55  Aligned_cols=144  Identities=15%  Similarity=0.177  Sum_probs=85.0

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCC----CCchhHHHHH---Hh---hCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLKN----FNPRENIKTL---IK---ESPVPTLFTYRPIWEGGQYDGDENERVDV  103 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~----~~~~~~l~~l---~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~l  103 (420)
                      +.+++++.+++..+.|||+|.+=...-..    .+..++++++   ++   ..+.|+-  +-|            .+.+.
T Consensus        50 ~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~~vpiS--IDT------------~~~~V  115 (294)
T 2dqw_A           50 DPERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSLGVPVS--VDT------------RKPEV  115 (294)
T ss_dssp             ---CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTTCSCEE--EEC------------SCHHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhCCCeEE--EEC------------CCHHH
Confidence            45667888888888999999998865421    1112223322   21   1266653  332            12358


Q ss_pred             HHHHHHhCCcEE-EEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCH---------------HHHHHHHHHHHHcCC
Q 014691          104 LRLAMELGADYI-DVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSV---------------EDLSNLVARIQASGA  167 (420)
Q Consensus       104 l~~~~~~~~d~i-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~---------------~el~~~~~~~~~~ga  167 (420)
                      .++|++.|+++| ||-....++..+-+.   +.+..+|+.+ .-+++|..               +.+.+.++.+.+.|.
T Consensus       116 a~aAl~aGa~iINdVsg~~d~~m~~v~a---~~~~~vVlmh-~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi  191 (294)
T 2dqw_A          116 AEEALKLGAHLLNDVTGLRDERMVALAA---RHGVAAVVMH-MPVPDPATMMAHARYRDVVAEVKAFLEAQARRALSAGV  191 (294)
T ss_dssp             HHHHHHHTCSEEECSSCSCCHHHHHHHH---HHTCEEEEEC-CSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCCEEEECCCCCChHHHHHHH---HhCCCEEEEc-CCCCCCccccccCccccHHHHHHHHHHHHHHHHHHCCC
Confidence            889999999987 554443344433222   2467888774 32156642               346777888889998


Q ss_pred             CEEEEEeec-----CCHHHHHHHHHHhcc---CCCCEE
Q 014691          168 DIVKFATTA-----LDITDVARVFQITVH---SQVPII  197 (420)
Q Consensus       168 DivKia~~~-----~s~~D~~~ll~~~~~---~~~p~I  197 (420)
                      +  +|..=|     ++.++++.+++-+..   .+.|+.
T Consensus       192 ~--~IilDPG~Gf~kt~~~n~~ll~~l~~~~~~g~Pvl  227 (294)
T 2dqw_A          192 P--QVVLDPGFGFGKLLEHNLALLRRLDEIVALGHPVL  227 (294)
T ss_dssp             S--CEEEECCTTSSCCHHHHHHHHHTHHHHHTTSSCBE
T ss_pred             C--cEEEcCCCCcccCHHHHHHHHHHHHHHhcCCCCEE
Confidence            7  887654     678888888776543   466643

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=90.27  E-value=0.21  Score=53.53  Aligned_cols=35  Identities=29%  Similarity=0.387  Sum_probs=32.1

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..++|+|||+|.+|.++++.|++.|.+|+|++++.
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~  424 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGR  424 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            45799999999999999999999999999999864

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=90.18  E-value=0.2  Score=49.05  Aligned_cols=34  Identities=26%  Similarity=0.486  Sum_probs=30.8

Q ss_pred             CCEEEEEccchHHHHHHHHHHh-CC-CeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKA-KG-ARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~-~g-~~i~v~nR~~  414 (420)
                      ...|+|||+|-+|.++|+.|++ .| .+|+|+.+..
T Consensus        21 ~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           21 SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            4589999999999999999999 99 7999999863

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=90.08  E-value=0.27  Score=53.09  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=32.2

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..++|+|||+|.+|.++++.|.+.|.+|+|+++..
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~  422 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE  422 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            46799999999999999999999999999999864

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=90.00  E-value=0.24  Score=47.33  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=32.1

Q ss_pred             CCEEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          381 GKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       381 ~k~vlviG-aGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      .+++.||| +|-+|.+++..|...|.+|++++|+.+
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            56799999 999999999999999999999999864

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=89.97  E-value=3  Score=38.43  Aligned_cols=108  Identities=18%  Similarity=0.139  Sum_probs=72.4

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEe-cC--CCCCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRL-DG--LKNFNP-RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER  100 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRl-D~--l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~  100 (420)
                      +||-+|..-|..++.++++.+ +.|+|++++++ |-  .+++.- .+.++.+++.++.|+.+.+-..        +++.|
T Consensus         2 ~i~pSila~D~~~l~~~i~~~-~~gad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~--------dp~~~   72 (231)
T 3ctl_A            2 KISPSLMCMDLLKFKEQIEFI-DSHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVT--------RPQDY   72 (231)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHH-HTTCSCEEEEEECSSSSSCCCBCHHHHHHHHTTCCSCEEEEEESS--------CGGGT
T ss_pred             eEEeehhhCChhhHHHHHHHH-HcCCCEEEEEEEeCccCccchhcHHHHHHHHhccCCcEEEEEEec--------CHHHH
Confidence            588899999999999999998 88999999886 52  233321 2467777776789999888753        22333


Q ss_pred             HHHHHHHHHhCCcEEEEEccc-ccchhHHHhhcCCCCcEEEEEcc
Q 014691          101 VDVLRLAMELGADYIDVELQV-AREFNDSIRGKKPEKCKVIVSSH  144 (420)
Q Consensus       101 ~~ll~~~~~~~~d~iDiEl~~-~~~~~~~l~~~~~~~~kiI~S~H  144 (420)
                         ++.+.+.|+|+|-+=... .....+.+...+..+.++.++.+
T Consensus        73 ---i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k~gv~ln  114 (231)
T 3ctl_A           73 ---IAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILN  114 (231)
T ss_dssp             ---HHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTCEEEEEEC
T ss_pred             ---HHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCCeEEEEEE
Confidence               356677899999875554 32222222222345777777773

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=89.94  E-value=0.32  Score=47.09  Aligned_cols=39  Identities=33%  Similarity=0.414  Sum_probs=33.6

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKG-ARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g-~~i~v~nR~~~ka~  418 (420)
                      .|++++|+|+|++|.+++..+...| ++|+.++++.+|.+
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~  210 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLA  210 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence            4789999999999999988887775 59999999988754

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=89.91  E-value=0.24  Score=49.71  Aligned_cols=65  Identities=20%  Similarity=0.123  Sum_probs=46.4

Q ss_pred             EEEEecCHHHHHHHHHhhhc--cCCCCCCCcccccCCCEEEEEcc-chHHHHHHHHHHh-CCCeEEEEeCChhh
Q 014691          347 LFGYNTDYVGAISAIEDGLR--GRLNVSGGVSSALAGKLFVVIGA-GGAGKALAYGAKA-KGARVVIANRTYEN  416 (420)
Q Consensus       347 l~G~NTD~~G~~~~l~~~~~--~~~~~~~~~~~~~~~k~vlviGa-GGaara~~~aL~~-~g~~i~v~nR~~~k  416 (420)
                      ++-.|+--.|..+..++.+.  ...+     .....+|.+||.|+ +|.|+|++..|+. .|++|.+++|+.+.
T Consensus        16 ~~~~~~hp~gc~~~v~~qi~~~~~~~-----~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~   84 (405)
T 3zu3_A           16 FICVTAHPTGCEANVKKQIDYVTTEG-----PIANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPG   84 (405)
T ss_dssp             TEECCCCHHHHHHHHHHHHHHHHHHC-----CCTTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCC
T ss_pred             eeecCCCCHHHHHHHHHHHHHHHhcC-----CcCCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchh
Confidence            56677888888776654431  0000     12235789999986 6899999999999 99999999887543

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=89.87  E-value=0.24  Score=51.49  Aligned_cols=34  Identities=21%  Similarity=0.324  Sum_probs=31.1

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      ..|+|||+|.+|.+++..|++.|++|+|+.|...
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~   60 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDG   60 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            4799999999999999999999999999998643

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=89.82  E-value=0.35  Score=46.91  Aligned_cols=38  Identities=32%  Similarity=0.482  Sum_probs=32.7

Q ss_pred             CCCEEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviG-aGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+| +|++|.+++..+...|++|+++ ++.++.+
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~  188 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLE  188 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHH
Confidence            578999999 6999999999999999988888 7766643

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=89.69  E-value=0.33  Score=50.40  Aligned_cols=33  Identities=18%  Similarity=0.181  Sum_probs=30.5

Q ss_pred             CCEEEEEccchHHHHHHHHHHh---CCCeEEEEeCC
Q 014691          381 GKLFVVIGAGGAGKALAYGAKA---KGARVVIANRT  413 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~---~g~~i~v~nR~  413 (420)
                      .++|+|||+|.+|.++|++|++   .|.+|+|+.|.
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~   60 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAP   60 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCC
Confidence            4689999999999999999999   89999999985

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=89.67  E-value=0.25  Score=49.74  Aligned_cols=33  Identities=33%  Similarity=0.509  Sum_probs=30.4

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..|+|||+|.+|.++|+.|++.|.+|+|+.+..
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~   59 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   59 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            469999999999999999999999999999864

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=89.65  E-value=3.2  Score=37.09  Aligned_cols=107  Identities=16%  Similarity=0.202  Sum_probs=67.3

Q ss_pred             cEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEe-cCC-CCC-Cc-hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHH
Q 014691           24 TLICVPIMGESVDKMVVDMGKANASGADLVEIRL-DGL-KNF-NP-RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENE   99 (420)
Q Consensus        24 ~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRl-D~l-~~~-~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~   99 (420)
                      .+|+-.|..-|..++.+.++.+.+.|+|++++|. |-- ... .. .+.++.+++..+.|+.+.+=-.        +.++
T Consensus         4 ~~~~~~i~a~D~~~~~~~~~~~~~~G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~~~~~~~~v~l~v~--------d~~~   75 (220)
T 2fli_A            4 LKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVV--------DPER   75 (220)
T ss_dssp             CEEEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESS--------SGGG
T ss_pred             cEEEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCccccCHHHHHHHHHhCCCCEEEEEeec--------CHHH
Confidence            4688889999999999988888888999999994 532 211 11 3456677665567776653311        1122


Q ss_pred             HHHHHHHHHHhCCcEEEEEcccccc---hhHHHhhcCCCCcEEEEEcc
Q 014691          100 RVDVLRLAMELGADYIDVELQVARE---FNDSIRGKKPEKCKVIVSSH  144 (420)
Q Consensus       100 ~~~ll~~~~~~~~d~iDiEl~~~~~---~~~~l~~~~~~~~kiI~S~H  144 (420)
                      +   ++.+.+.|+|+|-+-....+.   ..+.+.   ..+.+++++.+
T Consensus        76 ~---i~~~~~~gad~v~vh~~~~~~~~~~~~~~~---~~g~~i~~~~~  117 (220)
T 2fli_A           76 Y---VEAFAQAGADIMTIHTESTRHIHGALQKIK---AAGMKAGVVIN  117 (220)
T ss_dssp             G---HHHHHHHTCSEEEEEGGGCSCHHHHHHHHH---HTTSEEEEEEC
T ss_pred             H---HHHHHHcCCCEEEEccCccccHHHHHHHHH---HcCCcEEEEEc
Confidence            2   366777899998774332222   223332   23567888874

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=89.63  E-value=0.34  Score=50.36  Aligned_cols=39  Identities=31%  Similarity=0.342  Sum_probs=35.7

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      ..+.|+++.|||.|-+|++++..|..+|++|++++|+.+
T Consensus       138 ~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~  176 (529)
T 1ygy_A          138 TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS  176 (529)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             cccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCC
Confidence            467899999999999999999999999999999999753

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=89.57  E-value=0.39  Score=48.90  Aligned_cols=38  Identities=37%  Similarity=0.412  Sum_probs=33.5

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+++|.+||.|+ ||.|++++..|++.|++|++++|+.
T Consensus       209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~  247 (454)
T 3u0b_A          209 KPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDG  247 (454)
T ss_dssp             STTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGG
T ss_pred             cCCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3467899999985 8899999999999999999999964

>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}

Probab=89.57  E-value=1.4  Score=39.80  Aligned_cols=123  Identities=12%  Similarity=0.034  Sum_probs=63.8

Q ss_pred             HHHHHhhhhcCCCEEEEEecCCCCCCchh---HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEE
Q 014691           39 VVDMGKANASGADLVEIRLDGLKNFNPRE---NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYI  115 (420)
Q Consensus        39 ~~~~~~~~~~~~D~vElRlD~l~~~~~~~---~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~i  115 (420)
                      ...++.++..|+|+|++|.-.   .+..+   .++.+.+....++|+.-+                  .+.+.+.|++.|
T Consensus        16 ~~~~~~a~~~Gv~~v~lr~k~---~~~~~~~~~i~~l~~~~~~~livnd~------------------~~~A~~~gadgv   74 (210)
T 3ceu_A           16 DKIITALFEEGLDILHLRKPE---TPAMYSERLLTLIPEKYHRRIVTHEH------------------FYLKEEFNLMGI   74 (210)
T ss_dssp             HHHHHHHHHTTCCEEEECCSS---CCHHHHHHHHHHSCGGGGGGEEESSC------------------TTHHHHTTCSEE
T ss_pred             HHHHHHHHHCCCCEEEEccCC---CCHHHHHHHHHHHHHHhCCeEEEeCC------------------HHHHHHcCCCEE
Confidence            356677778899999999433   22222   122222334577776311                  135667789988


Q ss_pred             EEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE--eecCCHH------HHHHHHH
Q 014691          116 DVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA--TTALDIT------DVARVFQ  187 (420)
Q Consensus       116 DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia--~~~~s~~------D~~~ll~  187 (420)
                      =+--.    ... ..  ...+..+..|.|+      .+|    ..++. .|||++++-  +...+..      +...+-.
T Consensus        75 hl~~~----~~~-~~--~~~~~~ig~s~~t------~~e----~~~A~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~  136 (210)
T 3ceu_A           75 HLNAR----NPS-EP--HDYAGHVSCSCHS------VEE----VKNRK-HFYDYVFMSPIYDSISKVNYYSTYTAEELRE  136 (210)
T ss_dssp             ECCSS----SCS-CC--TTCCSEEEEEECS------HHH----HHTTG-GGSSEEEECCCC---------CCCCHHHHHH
T ss_pred             EECcc----ccc-cc--cccCCEEEEecCC------HHH----HHHHh-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHH
Confidence            54211    111 11  1135677888883      233    33344 799999972  2222221      1222222


Q ss_pred             Hhcc--CCCCEEEEe
Q 014691          188 ITVH--SQVPIIGLV  200 (420)
Q Consensus       188 ~~~~--~~~p~I~~~  200 (420)
                      +...  .++|+++++
T Consensus       137 ~~~~~~~~iPviaiG  151 (210)
T 3ceu_A          137 AQKAKIIDSKVMALG  151 (210)
T ss_dssp             HHHTTCSSTTEEEES
T ss_pred             HHHhcCCCCCEEEEC
Confidence            2322  478988874

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=89.46  E-value=3  Score=39.83  Aligned_cols=115  Identities=14%  Similarity=0.144  Sum_probs=63.1

Q ss_pred             CHHHHHHHHHhhhhcCCCEE-EEE----ecC-CCC---CCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLV-EIR----LDG-LKN---FNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~v-ElR----lD~-l~~---~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (420)
                      +..++.+.+   ...|+|+| +++    .+. +..   ....+.++.+.+..++|++.-.|...            .+..
T Consensus        29 ~~~~~a~~~---~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~~iPv~~k~r~g~------------~~~~   93 (305)
T 2nv1_A           29 INAEQAKIA---EEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGH------------IVEA   93 (305)
T ss_dssp             SSHHHHHHH---HHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHCSSCEEEEECTTC------------HHHH
T ss_pred             CHHHHHHHH---HHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhCCCCEEecccccc------------hHHH
Confidence            455555444   45799999 775    222 221   11234677777778999998777411            1233


Q ss_pred             HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 014691          105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA  173 (420)
Q Consensus       105 ~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia  173 (420)
                      +.+.+.|+|.|+.--....+....+...+.-+..++.+.|+      .+|.   . ++.+.|+|++++-
T Consensus        94 ~~~~a~GAd~V~~~~~l~~~~~~~~i~~~~~g~~v~~~~~~------~~e~---~-~a~~~Gad~V~~~  152 (305)
T 2nv1_A           94 RVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRD------LGEA---T-RRIAEGASMLRTK  152 (305)
T ss_dssp             HHHHHHTCSEEEECTTSCCSCSSCCCCGGGCSSCEEEEESS------HHHH---H-HHHHTTCSEEEEC
T ss_pred             HHHHHCCCCEEEEeccCCHHHHHHHHHHhccCCcEEEEeCC------HHHH---H-HHHHCCCCEEEec
Confidence            44556899999721111111111221122346788888874      2233   2 2337899999884

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=89.46  E-value=0.25  Score=47.58  Aligned_cols=127  Identities=18%  Similarity=0.264  Sum_probs=75.5

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHH--HhhhhcccHH--HHHhcceeEEEEecc
Q 014691          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTV--AKSIGAVNCIIRRQS  343 (420)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i--~~~~d~l~~~--A~~iGAvNTi~~~~~  343 (420)
                      ....+++|+......++.    +++.+.++.+ .++.+.|+-|-.|.-..+  -..++.+++.  +.-+...|.=...  
T Consensus        75 ~k~c~~vGi~s~~~~lp~~~se~ell~~I~~LN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDG~hp~N~G~L~--  152 (303)
T 4b4u_A           75 GNACRRVGMDSLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMA--  152 (303)
T ss_dssp             HHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGCTTCCCHHHHHHHH--
T ss_pred             HHHHHHcCCeEEEEecCccCCHHHHHHHHHHhcCCCCccEEEEeCCCccccChHHHHhccCcccccCccCcchHHHhc--
Confidence            457889999876555543    3677777777 578899999999963211  0011111110  0000001100000  


Q ss_pred             CCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691          344 DGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       344 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR  412 (420)
                      .|.-.=.-.--.|++..|++.           +.+++||+++|||.+. +||-++.-|.+.++.|+++..
T Consensus       153 ~g~~~~~PcTp~gv~~lL~~~-----------~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs  211 (303)
T 4b4u_A          153 MGEAAYGSATPAGIMTILKEN-----------NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHS  211 (303)
T ss_dssp             TTCCCCCCHHHHHHHHHHHHT-----------TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred             CCCCcccCccHHHHHHHHHHH-----------CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecC
Confidence            000000011146777776653           2678999999999877 999999999999999999874

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=89.42  E-value=3.5  Score=37.80  Aligned_cols=112  Identities=13%  Similarity=0.118  Sum_probs=71.2

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecC--C-CCCCc-hhHHHHHHhh--CCCcEEEEeccCCCCCCCCC
Q 014691           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDG--L-KNFNP-RENIKTLIKE--SPVPTLFTYRPIWEGGQYDG   95 (420)
Q Consensus        22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~--l-~~~~~-~~~l~~l~~~--~~~PiI~T~R~~~eGG~~~~   95 (420)
                      .+++||-+|..-|...+.++++.+.+.|+|++-+++=-  | ++..- .+.++.+++.  .++|+-+.+=..        
T Consensus         3 ~~~~i~psil~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~--------   74 (228)
T 3ovp_A            3 SGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVS--------   74 (228)
T ss_dssp             -CCEEEEBCTTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECS--------
T ss_pred             CCcEeeeeheeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeC--------
Confidence            34789999999999999999999888899999987632  2 22222 2457777766  478888776531        


Q ss_pred             CHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcc
Q 014691           96 DENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSH  144 (420)
Q Consensus        96 ~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H  144 (420)
                      +.+.|   ++.+.+.|+|+|-+=....+...+.+...+..+.++.++.+
T Consensus        75 ~p~~~---i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~  120 (228)
T 3ovp_A           75 KPEQW---VKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK  120 (228)
T ss_dssp             CGGGG---HHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEEC
T ss_pred             CHHHH---HHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEc
Confidence            22333   44567789998887544332222222222234556666654

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=89.39  E-value=0.36  Score=48.52  Aligned_cols=39  Identities=26%  Similarity=0.266  Sum_probs=36.0

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      ..+.||++.|||-|.+|+.++..|..+|++|+.+||+.+
T Consensus       141 ~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~  179 (404)
T 1sc6_A          141 FEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK  179 (404)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCch
Confidence            468899999999999999999999999999999999754

>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}

Probab=89.38  E-value=5.2  Score=38.66  Aligned_cols=145  Identities=16%  Similarity=0.121  Sum_probs=81.8

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCC---CCCchhHHHHH-------HhhC-CCcEEEEeccCCCCCCCCCCHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLK---NFNPRENIKTL-------IKES-PVPTLFTYRPIWEGGQYDGDENERVD  102 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~---~~~~~~~l~~l-------~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~  102 (420)
                      +.+++++.+++..+.|||+|.+=-....   ..+..++++++       .+.. +.||  .+-|            .+.+
T Consensus        63 ~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpI--SIDT------------~~~~  128 (318)
T 2vp8_A           63 SDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLI--SVDT------------WRAQ  128 (318)
T ss_dssp             -CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEE--EEEC------------SCHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeE--EEeC------------CCHH
Confidence            5788899999989999999999875432   22323344333       3333 5565  3332            1235


Q ss_pred             HHHHHHHhCCcEE-EEEcccccchhHHHhhcCCCCcEEEEEcccCCCC-CCH-------------------HHHHHHHHH
Q 014691          103 VLRLAMELGADYI-DVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYT-PSV-------------------EDLSNLVAR  161 (420)
Q Consensus       103 ll~~~~~~~~d~i-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~t-P~~-------------------~el~~~~~~  161 (420)
                      ..++|++.|+++| ||-....++..+-+.   +.+..+|+.+ + +++ |..                   +++.+.++.
T Consensus       129 VaeaAl~aGa~iINDVsg~~d~~m~~vaa---~~g~~vVlmh-~-~G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~  203 (318)
T 2vp8_A          129 VAKAACAAGADLINDTWGGVDPAMPEVAA---EFGAGLVCAH-T-GGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAER  203 (318)
T ss_dssp             HHHHHHHHTCCEEEETTSSSSTTHHHHHH---HHTCEEEEEC-C--------------CCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCEEEECCCCCchHHHHHHH---HhCCCEEEEC-C-CCCCccccccccccccccccHHHHHHHHHHHHHHH
Confidence            8889999999887 554443444443332   2467788764 3 444 431                   445667788


Q ss_pred             HHHcCCCEEEEEe-----ecCCHHHHHHHHHHhcc---CCCCEE
Q 014691          162 IQASGADIVKFAT-----TALDITDVARVFQITVH---SQVPII  197 (420)
Q Consensus       162 ~~~~gaDivKia~-----~~~s~~D~~~ll~~~~~---~~~p~I  197 (420)
                      +.+.|.+-=+|..     ..++.++++.+++-+..   .+.|+.
T Consensus       204 a~~aGI~~~~IilDPG~GF~Kt~~~nl~ll~~l~~l~~lg~PvL  247 (318)
T 2vp8_A          204 AVAAGVAREKVLIDPAHDFGKNTFHGLLLLRHVADLVMTGWPVL  247 (318)
T ss_dssp             HHHTTCCGGGEEEETTTTCCTTSHHHHHHHHTHHHHHTTSSCBE
T ss_pred             HHHcCCChhhEEEcCCCCcccCHHHHHHHHHHHHHHHhCCCCEE
Confidence            8888854113443     34677888888775443   355643

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=89.36  E-value=0.29  Score=50.46  Aligned_cols=34  Identities=29%  Similarity=0.306  Sum_probs=31.4

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+++|||+|.+|.++++.|.+.|.+|+|++++.
T Consensus        43 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~   76 (523)
T 1mo9_A           43 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   76 (523)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4579999999999999999999999999999875

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=89.26  E-value=0.33  Score=45.80  Aligned_cols=35  Identities=23%  Similarity=0.269  Sum_probs=32.1

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      +.+|+++|||+|-+|--++..|.++|.+|+|+.|.
T Consensus       143 ~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~  177 (312)
T 4gcm_A          143 FKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRR  177 (312)
T ss_dssp             GTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecc
Confidence            46899999999999999999999999999999875

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=89.25  E-value=0.29  Score=46.79  Aligned_cols=37  Identities=14%  Similarity=0.167  Sum_probs=31.7

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      .|++|||+|+|++|.+++..+...|++|+.+. +.+|.
T Consensus       142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~  178 (315)
T 3goh_A          142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQ  178 (315)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhH
Confidence            57899999999999999998889999888887 65553

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=89.25  E-value=9.2  Score=36.16  Aligned_cols=158  Identities=18%  Similarity=0.258  Sum_probs=90.5

Q ss_pred             hhcCCCEEEEEecCCC-------CCCc---h---hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 014691           46 NASGADLVEIRLDGLK-------NFNP---R---ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA  112 (420)
Q Consensus        46 ~~~~~D~vElRlD~l~-------~~~~---~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~  112 (420)
                      .+.|+|++ +==|.+.       +..+   .   ...+.+.+..+.|+|+ .-.  .-|.+..+.++-++-..+.++.|+
T Consensus        34 e~aG~d~i-lvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vv-aD~--pfgsy~~s~~~a~~na~rl~kaGa  109 (275)
T 1o66_A           34 DDAGVEML-LVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIV-SDL--PFGAYQQSKEQAFAAAAELMAAGA  109 (275)
T ss_dssp             HHTTCCEE-EECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEE-EEC--CTTSSSSCHHHHHHHHHHHHHTTC
T ss_pred             HHcCCCEE-EECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEE-EEC--CCCCccCCHHHHHHHHHHHHHcCC
Confidence            35699999 6556542       1111   1   2344555667777665 443  224455566665555566777899


Q ss_pred             cEEEEEccc-ccchhHHHhhcCCCCcEEEE-------Eccc---C---CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCC
Q 014691          113 DYIDVELQV-AREFNDSIRGKKPEKCKVIV-------SSHN---Y---QYTPSVEDLSNLVARIQASGADIVKFATTALD  178 (420)
Q Consensus       113 d~iDiEl~~-~~~~~~~l~~~~~~~~kiI~-------S~H~---f---~~tP~~~el~~~~~~~~~~gaDivKia~~~~s  178 (420)
                      +.|-||-.. ..+.++.+.   ..++.|+.       |.|.   |   -.|-..+++.+......+.|||.+=+=..+  
T Consensus       110 ~aVklEdg~e~~~~I~al~---~agIpV~gHiGLtPQs~~~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~vp--  184 (275)
T 1o66_A          110 HMVKLEGGVWMAETTEFLQ---MRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAGAAVVLMECVL--  184 (275)
T ss_dssp             SEEEEECSGGGHHHHHHHH---HTTCCEEEEEESCGGGTTC-----------CHHHHHHHHHHHHHTTCSEEEEESCC--
T ss_pred             cEEEECCcHHHHHHHHHHH---HcCCCeEeeeccCceeecccCCeEEEeChHHHHHHHHHHHHHHHcCCcEEEEecCC--
Confidence            999999862 222333333   23555542       1121   1   122234677777778888999988776554  


Q ss_pred             HHHHHHHHHHhccCCCCEEEEecCCc--chhhhhhccccC
Q 014691          179 ITDVARVFQITVHSQVPIIGLVMGER--GLISRILCAKFG  216 (420)
Q Consensus       179 ~~D~~~ll~~~~~~~~p~I~~~MG~~--G~~SRi~~~~~G  216 (420)
                       +++.  -+++...++|+|.|+-|+.  |++ -++..++|
T Consensus       185 -~~~a--~~it~~l~iP~igIGaG~~~dgQv-LV~~D~lG  220 (275)
T 1o66_A          185 -AELA--KKVTETVSCPTIGIGAGADCDGQV-LVMHDMLG  220 (275)
T ss_dssp             -HHHH--HHHHHHCSSCEEEESSCSCSSEEE-ECHHHHTT
T ss_pred             -HHHH--HHHHHhCCCCEEEECCCCCCCcce-eeHHhhcC
Confidence             2332  2445556799999988875  554 33444444

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=89.25  E-value=0.31  Score=45.82  Aligned_cols=36  Identities=28%  Similarity=0.458  Sum_probs=32.7

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .++++++|||+|..|--++..|.++|.+|+++.|..
T Consensus       150 ~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~  185 (314)
T 4a5l_A          150 FRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRD  185 (314)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccc
Confidence            467999999999999999999999999999998753

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=89.25  E-value=0.25  Score=48.96  Aligned_cols=32  Identities=31%  Similarity=0.425  Sum_probs=29.8

Q ss_pred             CEEEEEccchHHHHHHHHHHhC--CCeEEEEeCC
Q 014691          382 KLFVVIGAGGAGKALAYGAKAK--GARVVIANRT  413 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~--g~~i~v~nR~  413 (420)
                      ..|+|||+|-+|.++|+.|++.  |.+|+|+.+.
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~   70 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEG   70 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            4699999999999999999999  9999999985

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=89.20  E-value=0.32  Score=47.41  Aligned_cols=35  Identities=23%  Similarity=0.202  Sum_probs=30.9

Q ss_pred             CCEEEEEccchHHHHH-HHHH-HhCCCe-EEEEeCChh
Q 014691          381 GKLFVVIGAGGAGKAL-AYGA-KAKGAR-VVIANRTYE  415 (420)
Q Consensus       381 ~k~vlviGaGGaara~-~~aL-~~~g~~-i~v~nR~~~  415 (420)
                      +++|||+|+|++|.++ +..+ ..+|++ |+.+.++.+
T Consensus       173 ~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~  210 (357)
T 2b5w_A          173 PSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDR  210 (357)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcc
Confidence            3899999999999999 8877 788995 999999876

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=89.16  E-value=0.23  Score=47.57  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=29.0

Q ss_pred             CCEEEEEccchHHHHHHHHHHh--CCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKA--KGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~--~g~~i~v~nR~~  414 (420)
                      ...|+|||+|.+|.++++.|++  .|.+|+|+.+..
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~  100 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV  100 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            3469999999999999999974  588999998753

>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A

Probab=89.15  E-value=9.9  Score=39.68  Aligned_cols=148  Identities=15%  Similarity=0.142  Sum_probs=85.8

Q ss_pred             ccccccccccccCCCCCCcEEEEeecCC------------CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHH
Q 014691            6 LLVASGSKLVSGGMRKNPTLICVPIMGE------------SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLI   73 (420)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~icv~l~~~------------~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~   73 (420)
                      ..++||++.+.-   .+.-.|..-+...            +.+++++.+++..+.|||+|-+-.+.-. .+..+.+++++
T Consensus       301 ~~~~s~~~~~~~---~~~~iiGer~N~Tg~dsf~~~~~~~~~~~a~~~A~~~v~~GAdiIDIgpg~~~-v~~~ee~~rvv  376 (566)
T 1q7z_A          301 FAVSSPSKLVTF---DHFVVIGERINPAGRKKLWAEMQKGNEEIVIKEAKTQVEKGAEVLDVNFGIES-QIDVRYVEKIV  376 (566)
T ss_dssp             CEEECSSCEEES---SSCEEEEEEECCTTCHHHHHHHHTTCCHHHHHHHHHHHHTTCSEEEEECSSGG-GSCHHHHHHHH
T ss_pred             ceecCCceeecc---ccceEEEEEecCCCChhHHHHhhcCCHHHHHHHHHHHHHCCCCEEEECCCCCC-CCHHHHHHHHH
Confidence            346788877765   3333444434433            5788888888888999999999965421 22233444433


Q ss_pred             ----hhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHh--CCcEE-EEEcccc--cchhHHHhhcCCCCcEEEEEcc
Q 014691           74 ----KESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL--GADYI-DVELQVA--REFNDSIRGKKPEKCKVIVSSH  144 (420)
Q Consensus        74 ----~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~--~~d~i-DiEl~~~--~~~~~~l~~~~~~~~kiI~S~H  144 (420)
                          +..++|+.+-  |            .+.+.++++++.  |+++| ||-....  ++..+ +.  ++.+..+|+.+-
T Consensus       377 ~~i~~~~~vpisID--T------------~~~~v~eaal~~~~G~~iINdis~~~~~~~~~~~-~~--~~~g~~vV~m~~  439 (566)
T 1q7z_A          377 QTLPYVSNVPLSLD--I------------QNVDLTERALRAYPGRSLFNSAKVDEEELEMKIN-LL--KKYGGTLIVLLM  439 (566)
T ss_dssp             HHHHHHTCSCEEEE--C------------CCHHHHHHHHHHCSSCCEEEEEESCHHHHHHHHH-HH--HHHCCEEEEESC
T ss_pred             HHHHhhCCceEEEe--C------------CCHHHHHHHHHhcCCCCEEEECCcchhhHHHHHH-HH--HHhCCeEEEEeC
Confidence                3457786543  1            133588889988  88776 6655442  22222 22  234667877653


Q ss_pred             cCCCCCC-----HHHHHHHHHHHHHcCCCEEEEEeec
Q 014691          145 NYQYTPS-----VEDLSNLVARIQASGADIVKFATTA  176 (420)
Q Consensus       145 ~f~~tP~-----~~el~~~~~~~~~~gaDivKia~~~  176 (420)
                      +-+ +|.     .+.+.+.++.+.+.|.+ =+|..=|
T Consensus       440 ~~~-~p~t~~~~~~~l~~~~~~a~~~Gi~-~~IilDP  474 (566)
T 1q7z_A          440 GKD-VPKSFEERKEYFEKALKILERHDFS-DRVIFDP  474 (566)
T ss_dssp             SSS-CCCSHHHHHHHHHHHHHHHHHTTCG-GGEEEEC
T ss_pred             CCC-CcCCHHHHHHHHHHHHHHHHHCCCC-CcEEEeC
Confidence            322 664     23456666666677754 3344333

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=89.12  E-value=0.41  Score=48.11  Aligned_cols=37  Identities=24%  Similarity=0.513  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+.+++++|+|+|..||.++.++.++|+++.+++.++
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~   68 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDP   68 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            3578999999999999999999999999999998764

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=89.12  E-value=0.28  Score=51.15  Aligned_cols=35  Identities=17%  Similarity=0.327  Sum_probs=31.4

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhC--CCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAK--GARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~--g~~i~v~nR~~  414 (420)
                      ..++|+|||+|.+|-++++.|.+.  |.+|+|++|+.
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~   71 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGE   71 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSS
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCC
Confidence            357899999999999999999988  67999999875

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=89.10  E-value=7  Score=36.13  Aligned_cols=29  Identities=14%  Similarity=0.247  Sum_probs=23.1

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCC
Q 014691           32 GESVDKMVVDMGKANASGADLVEIRLDGL   60 (420)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l   60 (420)
                      .++.++..+.++.+.+.|+|+||++.-+-
T Consensus        28 ~~~~~~~~~~~~~l~~~Gad~ielg~p~~   56 (262)
T 1rd5_A           28 DPDLATTAEALRLLDGCGADVIELGVPCS   56 (262)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCS
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence            34458888888888888999999987543

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=89.02  E-value=0.36  Score=46.22  Aligned_cols=37  Identities=27%  Similarity=0.329  Sum_probs=33.0

Q ss_pred             CCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       381 ~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      |+ |||+|+ |++|.+++..+...|++|+.+.++++|.+
T Consensus       148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~  185 (324)
T 3nx4_A          148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHG  185 (324)
T ss_dssp             CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHH
T ss_pred             Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            45 999998 99999999999999999999999887754

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=88.99  E-value=0.41  Score=48.25  Aligned_cols=39  Identities=21%  Similarity=0.315  Sum_probs=35.9

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      ..+.||++.|||-|.+|++++..|..+|++|+.++|+..
T Consensus       152 ~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~  190 (416)
T 3k5p_A          152 REVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDK  190 (416)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             ccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcch
Confidence            568899999999999999999999999999999998743

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=88.96  E-value=0.32  Score=49.55  Aligned_cols=32  Identities=28%  Similarity=0.435  Sum_probs=30.0

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ..++|||+|.+|.+++..|++.|.+|+|+++.
T Consensus        26 ~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~   57 (491)
T 3urh_A           26 YDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKR   57 (491)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            57999999999999999999999999999975

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=88.86  E-value=0.31  Score=51.07  Aligned_cols=34  Identities=29%  Similarity=0.401  Sum_probs=30.5

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      ..|+|||+|.+|.++++.|++.|++|+|+.|...
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~   83 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVE   83 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            3699999999999999999999999999998643

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=88.84  E-value=0.31  Score=50.03  Aligned_cols=32  Identities=41%  Similarity=0.415  Sum_probs=29.7

Q ss_pred             EEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       383 ~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .|+|||+|.+|.++++.|++.|.+|.|+.+..
T Consensus        43 DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~   74 (510)
T 4at0_A           43 DVVVAGYGIAGVAASIEAARAGADVLVLERTS   74 (510)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999998764

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=88.76  E-value=0.82  Score=46.10  Aligned_cols=52  Identities=29%  Similarity=0.308  Sum_probs=41.3

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccc-cCCCEEEEEccchHHHHHHHHHHh-CCCeEEEEeC
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSA-LAGKLFVVIGAGGAGKALAYGAKA-KGARVVIANR  412 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~-~~~k~vlviGaGGaara~~~aL~~-~g~~i~v~nR  412 (420)
                      ++|.+.++++.+..       .+.+ ++||++.|+|.|.+|+.++.-|.. +|++|.-+++
T Consensus       191 g~Gv~~~~~~~~~~-------~G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD  244 (419)
T 1gtm_A          191 ARGASYTIREAAKV-------LGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSD  244 (419)
T ss_dssp             HHHHHHHHHHHHHH-------TTCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             hhHHHHHHHHHHHH-------hCCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeC
Confidence            57777776666542       1256 889999999999999999999999 9998776654

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=88.71  E-value=0.32  Score=50.74  Aligned_cols=33  Identities=36%  Similarity=0.564  Sum_probs=30.4

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..|+|||+|.+|.+++..|++.|.+|.|+.+..
T Consensus       127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~  159 (571)
T 1y0p_A          127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEP  159 (571)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            469999999999999999999999999998764

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=88.64  E-value=0.21  Score=48.07  Aligned_cols=36  Identities=22%  Similarity=0.258  Sum_probs=31.6

Q ss_pred             EEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       383 ~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      +|||+|+ ||+|.+++..+...|++|+++.++.+|.+
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~  188 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHD  188 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            7999998 99999999999999999999998876643

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=88.60  E-value=0.42  Score=46.43  Aligned_cols=34  Identities=26%  Similarity=0.199  Sum_probs=30.8

Q ss_pred             CEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       382 k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      +++||.|+ |+.|++++..|.+.|++|++++|+.+
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   59 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   59 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCcc
Confidence            68999996 88999999999999999999999754

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=88.58  E-value=0.3  Score=54.72  Aligned_cols=36  Identities=14%  Similarity=0.289  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      .+++++|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus        24 rL~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D   60 (1015)
T 3cmm_A           24 KMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPE   60 (1015)
T ss_dssp             HHTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred             HHhcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCC
Confidence            3567899999999999999999999999 99999865

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=88.49  E-value=11  Score=35.30  Aligned_cols=143  Identities=20%  Similarity=0.133  Sum_probs=86.9

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (420)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~  111 (420)
                      ..|.+++.+-++++.+.+++.|=+.--+.      ......++.+++++- |+=.-..|..   +.+.+..-.+.|++.|
T Consensus        55 ~~t~~~I~~lc~eA~~~~~aaVCV~p~~V------~~a~~~L~gs~v~v~-tVigFP~G~~---~~~~Kv~Ea~~Ai~~G  124 (260)
T 3r12_A           55 FATPDDIKKLCLEARENRFHGVCVNPCYV------KLAREELEGTDVKVV-TVVGFPLGAN---ETRTKAHEAIFAVESG  124 (260)
T ss_dssp             TCCHHHHHHHHHHHHHTTCSEEEECGGGH------HHHHHHHTTSCCEEE-EEESTTTCCS---CHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHhcCCcEEEECHHHH------HHHHHHhcCCCCeEE-EEecCCCCCC---cHHHHHHHHHHHHHcC
Confidence            34677788878888777777665432221      223334444454444 4333333332   3366666678899999


Q ss_pred             CcEEEEEcccc-------cchhHHH---hhc-CCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEee----c
Q 014691          112 ADYIDVELQVA-------REFNDSI---RGK-KPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT----A  176 (420)
Q Consensus       112 ~d~iDiEl~~~-------~~~~~~l---~~~-~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~----~  176 (420)
                      +|-||+=++..       +...+++   ... .....|+|+---..    +.+++....+-+.+.|||+||--+=    .
T Consensus       125 AdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~L----t~eei~~A~~ia~eaGADfVKTSTGf~~~G  200 (260)
T 3r12_A          125 ADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYL----DTEEKIAACVISKLAGAHFVKTSTGFGTGG  200 (260)
T ss_dssp             CSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGC----CHHHHHHHHHHHHHTTCSEEECCCSSSSCC
T ss_pred             CCEEEEEeehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCC----CHHHHHHHHHHHHHhCcCEEEcCCCCCCCC
Confidence            99999976642       1122333   222 22347888754322    5678888888888999999998752    3


Q ss_pred             CCHHHHHHHHHH
Q 014691          177 LDITDVARVFQI  188 (420)
Q Consensus       177 ~s~~D~~~ll~~  188 (420)
                      .|.+|+..+.+.
T Consensus       201 AT~edV~lm~~~  212 (260)
T 3r12_A          201 ATAEDVHLMKWI  212 (260)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            577888665553

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=88.43  E-value=0.27  Score=47.21  Aligned_cols=36  Identities=28%  Similarity=0.348  Sum_probs=31.4

Q ss_pred             EEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       383 ~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      +|||+|+ ||+|.+++..+...|++|+++.|+.+|.+
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~  189 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAAD  189 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHH
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            7999998 99999999988889999999898866643

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=88.40  E-value=18  Score=34.50  Aligned_cols=130  Identities=16%  Similarity=0.194  Sum_probs=78.9

Q ss_pred             HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccccc-----------------chhHHHh
Q 014691           68 NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR-----------------EFNDSIR  130 (420)
Q Consensus        68 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~-----------------~~~~~l~  130 (420)
                      .++.+.+..++|+|+-.-+    | |- +.+.-.+..+..++.|+..|-||-....                 +....|.
T Consensus        70 ~~~~I~~~~~~PviaD~d~----G-yg-~~~~v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~  143 (295)
T 1s2w_A           70 VLEFMSDASDVPILLDADT----G-YG-NFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIK  143 (295)
T ss_dssp             HHHHHHHTCSSCEEEECCS----S-CS-SHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCEEecCCC----C-CC-CHHHHHHHHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHH
Confidence            4556666778998887664    4 43 4455556677778899999999987511                 2233332


Q ss_pred             ---hc-CCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEEecCCcc
Q 014691          131 ---GK-KPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERG  205 (420)
Q Consensus       131 ---~~-~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~~MG~~G  205 (420)
                         .+ ..++..|+.=--.+-.....+++.+......+.|||.+=+=....+.++..++.+.+. ..+|+|+ +|++.|
T Consensus       144 Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~-~~~P~i~-~~~~~~  220 (295)
T 1s2w_A          144 ACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSKKADPSDIEAFMKAWN-NQGPVVI-VPTKYY  220 (295)
T ss_dssp             HHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCSSSSHHHHHHHHHHT-TCSCEEE-CCSTTT
T ss_pred             HHHHhcccCCcEEEEeehHHhccccHHHHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHcC-CCCCEEE-eCCCCC
Confidence               12 2355666654322312334678888888888999997755332345677766655543 2378864 354443

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=88.40  E-value=0.3  Score=50.93  Aligned_cols=33  Identities=33%  Similarity=0.552  Sum_probs=30.3

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..|+|||+|.+|.++++.|++.|++|+|+.+..
T Consensus       122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~  154 (566)
T 1qo8_A          122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP  154 (566)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            479999999999999999999999999998764

>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4

Probab=88.39  E-value=10  Score=34.45  Aligned_cols=77  Identities=16%  Similarity=0.136  Sum_probs=44.8

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecCCC----CCCchhHHHHHHhhCCCcEE-EEeccCCCCCCCCC-CHH---HHHHH
Q 014691           33 ESVDKMVVDMGKANASGADLVEIRLDGLK----NFNPRENIKTLIKESPVPTL-FTYRPIWEGGQYDG-DEN---ERVDV  103 (420)
Q Consensus        33 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~l~~l~~~~~~PiI-~T~R~~~eGG~~~~-~~~---~~~~l  103 (420)
                      .++++.++.+   .+.|.|.||++.+...    +....++++.+++...+.+. ++.--.     +.. +++   .-.+.
T Consensus        19 ~~~~~~l~~~---~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~-----~~~~~~~~~~~~~~~   90 (272)
T 2q02_A           19 LSIEAFFRLV---KRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINAVYP-----FNQLTEEVVKKTEGL   90 (272)
T ss_dssp             SCHHHHHHHH---HHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEEEETT-----TTSCCHHHHHHHHHH
T ss_pred             CCHHHHHHHH---HHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEEechhhhc-----cCCcHHHHHHHHHHH
Confidence            3566666655   4569999999987542    11234567777777777763 232110     111 222   22345


Q ss_pred             HHHHHHhCCcEEEE
Q 014691          104 LRLAMELGADYIDV  117 (420)
Q Consensus       104 l~~~~~~~~d~iDi  117 (420)
                      ++.|.++|+.+|=+
T Consensus        91 i~~a~~lG~~~v~~  104 (272)
T 2q02_A           91 LRDAQGVGARALVL  104 (272)
T ss_dssp             HHHHHHHTCSEEEE
T ss_pred             HHHHHHhCCCEEEE
Confidence            66777788887765

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=88.34  E-value=0.45  Score=48.90  Aligned_cols=37  Identities=22%  Similarity=0.255  Sum_probs=33.2

Q ss_pred             CCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       381 ~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      +++|||.|+ |..|++++..|.+.|.+|+++.|+..++
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~  184 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP  184 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCc
Confidence            679999995 8899999999999999999999987654

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=88.34  E-value=0.34  Score=48.94  Aligned_cols=64  Identities=14%  Similarity=0.129  Sum_probs=42.4

Q ss_pred             EEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEcc-chHHHH--HHHHHHhCCCeEEEEeCChh
Q 014691          348 FGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-GGAGKA--LAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       348 ~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGa-GGaara--~~~aL~~~g~~i~v~nR~~~  415 (420)
                      +..++--.|....+++...    +.........||.+||.|+ +|.|++  ++.++.+.|++|++++|+.+
T Consensus        31 ~~~~~~p~g~~~~v~~qi~----y~~~~~~~~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~   97 (418)
T 4eue_A           31 FIRDVHPYGCRREVLNQID----YCKKAIGFRGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETG   97 (418)
T ss_dssp             EESCCCHHHHHHHHHHHHH----HHHHSCCCCCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCC
T ss_pred             eeccCCCccHHHHHHHHHH----HHhccCcCCCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcc
Confidence            4456666676665544321    0000011257899999996 789999  88888888999999999754

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=88.31  E-value=0.44  Score=48.11  Aligned_cols=53  Identities=17%  Similarity=0.249  Sum_probs=42.9

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEE-EEeCC
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANRT  413 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~-v~nR~  413 (420)
                      ++|.+.++++.+...       +.+++|++|+|.|.|.+|+.++..|.++|++|+ |.+.+
T Consensus       192 g~Gv~~~~~~~~~~~-------g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~  245 (421)
T 2yfq_A          192 GFGVAVVVRESAKRF-------GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWD  245 (421)
T ss_dssp             HHHHHHHHHHHHHHT-------TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCC
T ss_pred             HHHHHHHHHHHHHhc-------CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecC
Confidence            677777777665431       256889999999999999999999999999554 88877

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=88.30  E-value=17  Score=34.20  Aligned_cols=198  Identities=14%  Similarity=0.106  Sum_probs=109.8

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecCCCCC-----CchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHH
Q 014691           33 ESVDKMVVDMGKANASGADLVEIRLDGLKNF-----NPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLA  107 (420)
Q Consensus        33 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-----~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~  107 (420)
                      -+.++.++-++.+.+.|++.||.=.=.-...     ++.+.++.+.+..+.|+..-+.          .    .+-++++
T Consensus        23 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v~~l~~----------n----~~~i~~a   88 (295)
T 1ydn_A           23 VPTADKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRADGVRYSVLVP----------N----MKGYEAA   88 (295)
T ss_dssp             CCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCSSSEEEEECS----------S----HHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhCCCCEEEEEeC----------C----HHHHHHH
Confidence            3566677767777778999999852100111     1222334443323566643331          1    2456778


Q ss_pred             HHhCCcEEEEEcccc------------cchhHH----HhhcCCCCcEEE--EEcccCC----CCCCHHHHHHHHHHHHHc
Q 014691          108 MELGADYIDVELQVA------------REFNDS----IRGKKPEKCKVI--VSSHNYQ----YTPSVEDLSNLVARIQAS  165 (420)
Q Consensus       108 ~~~~~d~iDiEl~~~------------~~~~~~----l~~~~~~~~kiI--~S~H~f~----~tP~~~el~~~~~~~~~~  165 (420)
                      ++.|++.|-|....+            ++.++.    +...+..+.+|-  +|+= |.    ..-+.+++.+.++.+.+.
T Consensus        89 ~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~-~~~e~~~~~~~~~~~~~~~~~~~~  167 (295)
T 1ydn_A           89 AAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCV-VECPYDGPVTPQAVASVTEQLFSL  167 (295)
T ss_dssp             HHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS-SEETTTEECCHHHHHHHHHHHHHH
T ss_pred             HHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEE-ecCCcCCCCCHHHHHHHHHHHHhc
Confidence            889999888875322            112222    122345677775  3321 10    111467899999999999


Q ss_pred             CCCEEEEEeec--CCHHHHHHHHHHhccC-C-CCEEEEe--cCCcchhhhhhccccCCcccccccCC--CccCC---CCC
Q 014691          166 GADIVKFATTA--LDITDVARVFQITVHS-Q-VPIIGLV--MGERGLISRILCAKFGGFLTFGTLEN--GIVSA---PGQ  234 (420)
Q Consensus       166 gaDivKia~~~--~s~~D~~~ll~~~~~~-~-~p~I~~~--MG~~G~~SRi~~~~~Gs~ltf~~~~~--~~~sA---PGQ  234 (420)
                      |+|.+-++-+.  -++.++.++++.+... + .|+-.-+  .--++...-+.+-..|....-+++..  +.+-|   .|+
T Consensus       168 G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG~~~vd~sv~GlG~cp~a~g~~GN  247 (295)
T 1ydn_A          168 GCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVFDASVGGLGGCPFAPGAKGN  247 (295)
T ss_dssp             TCSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHTCCEEEEBTTCCSCBTTBTTSCCB
T ss_pred             CCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhCCCEEEeccccCCCCCCCCCCcCC
Confidence            99999998443  4688888888876543 3 6776665  22233222222222333322233322  01233   568


Q ss_pred             CCHHhHHHHHh
Q 014691          235 PTIKDLLDLYN  245 (420)
Q Consensus       235 ~~~~~l~~~~~  245 (420)
                      ++.+++...++
T Consensus       248 ~~~e~lv~~l~  258 (295)
T 1ydn_A          248 VDTVAVVEMLH  258 (295)
T ss_dssp             CBHHHHHHHHH
T ss_pred             hhHHHHHHHHH
Confidence            88888776655

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=88.22  E-value=0.47  Score=50.55  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=30.8

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..|+|||+|.+|.++|.+|++.|++|.|+.++.
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   61 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI   61 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence            479999999999999999999999999999874

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=88.19  E-value=0.27  Score=49.12  Aligned_cols=32  Identities=34%  Similarity=0.421  Sum_probs=29.9

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCC-CeEEEEeC
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKG-ARVVIANR  412 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g-~~i~v~nR  412 (420)
                      ...|+|||+|-+|.++|+.|++.| .+|+|+.+
T Consensus        23 ~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~   55 (448)
T 3axb_A           23 RFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA   55 (448)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence            457999999999999999999999 79999998

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=88.18  E-value=5.4  Score=35.70  Aligned_cols=104  Identities=26%  Similarity=0.327  Sum_probs=55.5

Q ss_pred             HHHHHHhhhhcCCCEEEEEecCCCCCCc---hhHHHHH---HhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691           38 MVVDMGKANASGADLVEIRLDGLKNFNP---RENIKTL---IKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (420)
Q Consensus        38 ~~~~~~~~~~~~~D~vElRlD~l~~~~~---~~~l~~l---~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~  111 (420)
                      ..+.++.+.+.|+|+|++|.-......-   .+..+.+   .+..+.|+++.               ++   ++.+.+.|
T Consensus        33 ~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~---------------~~---~~~a~~~g   94 (227)
T 2tps_A           33 PVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVN---------------DD---VELALNLK   94 (227)
T ss_dssp             HHHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEE---------------SC---HHHHHHHT
T ss_pred             HHHHHHHHHHCCCCEEEEecCCCCHhHHHHHHHHHHHHHHHHHHcCCeEEEc---------------CH---HHHHHHcC
Confidence            5666777778899999999432222121   1222222   23346788773               11   23466779


Q ss_pred             CcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          112 ADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       112 ~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      ++.|=+.-.. .+ ...+.... +...+-+|.|    |  .+|    +.++.+.|+|++++
T Consensus        95 ad~v~l~~~~-~~-~~~~~~~~-g~~~~~~s~~----t--~~e----~~~a~~~g~d~v~~  142 (227)
T 2tps_A           95 ADGIHIGQED-AN-AKEVRAAI-GDMILGVSAH----T--MSE----VKQAEEDGADYVGL  142 (227)
T ss_dssp             CSEEEECTTS-SC-HHHHHHHH-TTSEEEEEEC----S--HHH----HHHHHHHTCSEEEE
T ss_pred             CCEEEECCCc-cC-HHHHHHhc-CCcEEEEecC----C--HHH----HHHHHhCCCCEEEE
Confidence            9998774322 22 23332211 1134444555    2  233    33455679999997

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=88.15  E-value=5  Score=36.79  Aligned_cols=140  Identities=16%  Similarity=0.185  Sum_probs=84.0

Q ss_pred             HhhhhcCCCEEEEEecCCC-CCCch-hHHHHHH---hhCCCcEEEEeccCCCCCCCCCCHHHH---HHHHHHHHHhCCcE
Q 014691           43 GKANASGADLVEIRLDGLK-NFNPR-ENIKTLI---KESPVPTLFTYRPIWEGGQYDGDENER---VDVLRLAMELGADY  114 (420)
Q Consensus        43 ~~~~~~~~D~vElRlD~l~-~~~~~-~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~~~---~~ll~~~~~~~~d~  114 (420)
                      ..+.+.|||-|||.-++-. ...|. ..++.++   +..++|+.+-+|.+  ||-|-.++++.   .+=++.+.++|+|-
T Consensus        15 ~~A~~~GAdRIELc~~L~~GGlTPS~g~i~~~~~~~~~~~ipV~vMIRPR--~GdF~Ys~~E~~~M~~Di~~~~~~GadG   92 (224)
T 2bdq_A           15 TRLDKAIISRVELCDNLAVGGTTPSYGVIKEANQYLHEKGISVAVMIRPR--GGNFVYNDLELRIMEEDILRAVELESDA   92 (224)
T ss_dssp             GGCCTTTCCEEEEEBCGGGTCBCCCHHHHHHHHHHHHHTTCEEEEECCSS--SSCSCCCHHHHHHHHHHHHHHHHTTCSE
T ss_pred             HHHHHcCCCEEEEcCCcccCCcCCCHHHHHHHHHhhhhcCCceEEEECCC--CCCCcCCHHHHHHHHHHHHHHHHcCCCE
Confidence            3456789999999988643 33342 2355555   66799999999953  45566666443   33355677788887


Q ss_pred             EEEEc-----ccccchhHHHhhcCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCC--HHHHHHHH
Q 014691          115 IDVEL-----QVAREFNDSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTALD--ITDVARVF  186 (420)
Q Consensus       115 iDiEl-----~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s--~~D~~~ll  186 (420)
                      |=+=.     ..+.+..+++... .++..  +.||- |+.+|. .+..+-++.+.++|.|=+==.--+.+  ..|.+..+
T Consensus        93 vV~G~Lt~dg~iD~~~~~~Li~~-a~~~~--vTFHRAFD~~~~-~d~~~ale~L~~lGv~rILTSG~~~~~~a~~g~~~L  168 (224)
T 2bdq_A           93 LVLGILTSNNHIDTEAIEQLLPA-TQGLP--LVFHMAFDVIPK-SDQKKSIDQLVALGFTRILLHGSSNGEPIIENIKHI  168 (224)
T ss_dssp             EEECCBCTTSSBCHHHHHHHHHH-HTTCC--EEECGGGGGSCT-TTHHHHHHHHHHTTCCEEEECSCSSCCCGGGGHHHH
T ss_pred             EEEeeECCCCCcCHHHHHHHHHH-hCCCe--EEEECchhccCC-cCHHHHHHHHHHcCCCEEECCCCCCCCcHHHHHHHH
Confidence            65522     2344456666632 13444  46775 888842 23455688888888654332222334  55655555


Q ss_pred             HH
Q 014691          187 QI  188 (420)
Q Consensus       187 ~~  188 (420)
                      +-
T Consensus       169 ~~  170 (224)
T 2bdq_A          169 KA  170 (224)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=88.15  E-value=0.42  Score=48.58  Aligned_cols=32  Identities=41%  Similarity=0.402  Sum_probs=30.1

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ..|+|||+|.+|.++++.|++.|.+|+|+.+.
T Consensus        27 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~   58 (484)
T 3o0h_A           27 FDLFVIGSGSGGVRAARLAGALGKRVAIAEEY   58 (484)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC
Confidence            47999999999999999999999999999984

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=88.14  E-value=0.26  Score=51.51  Aligned_cols=33  Identities=24%  Similarity=0.233  Sum_probs=30.7

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      +.|+|||+|.+|.++|+.|++.|.+|.|+.|..
T Consensus       108 ~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~  140 (549)
T 3nlc_A          108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK  140 (549)
T ss_dssp             CCCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEEccC
Confidence            579999999999999999999999999999863

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=87.99  E-value=13  Score=34.21  Aligned_cols=107  Identities=21%  Similarity=0.214  Sum_probs=64.6

Q ss_pred             HHHHHHHHhhhhcCCCEEEEEecCCC------CCCch------hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691           36 DKMVVDMGKANASGADLVEIRLDGLK------NFNPR------ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDV  103 (420)
Q Consensus        36 ~e~~~~~~~~~~~~~D~vElRlD~l~------~~~~~------~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l  103 (420)
                      +++...+++++..|+++|=+|--...      ..+..      .++..+-+..+.|+|+.-|               .+ 
T Consensus        43 ~~~~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liInd~---------------~~-  106 (243)
T 3o63_A           43 GDLAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAVNDR---------------AD-  106 (243)
T ss_dssp             CCHHHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEEESC---------------HH-
T ss_pred             chHHHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEEeCH---------------HH-
Confidence            35677777788899999999975411      01221      2233344557889998633               12 


Q ss_pred             HHHHHHhCCcEEEEEccc-ccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 014691          104 LRLAMELGADYIDVELQV-AREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA  173 (420)
Q Consensus       104 l~~~~~~~~d~iDiEl~~-~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia  173 (420)
                        .+.+.|+|.|=+.-.. +....+.+   ...+..|-+|.|+      .+|    +.++.+.|+|++.+-
T Consensus       107 --lA~~~gAdGVHLg~~dl~~~~~r~~---~~~~~~iG~S~ht------~~E----a~~A~~~GaDyI~vg  162 (243)
T 3o63_A          107 --IARAAGADVLHLGQRDLPVNVARQI---LAPDTLIGRSTHD------PDQ----VAAAAAGDADYFCVG  162 (243)
T ss_dssp             --HHHHHTCSEEEECTTSSCHHHHHHH---SCTTCEEEEEECS------HHH----HHHHHHSSCSEEEEC
T ss_pred             --HHHHhCCCEEEecCCcCCHHHHHHh---hCCCCEEEEeCCC------HHH----HHHHhhCCCCEEEEc
Confidence              2566789988776432 22222222   2345667779884      233    344556899999984

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=87.90  E-value=6  Score=36.01  Aligned_cols=146  Identities=14%  Similarity=0.210  Sum_probs=75.6

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEec--CC-CCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHh
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLD--GL-KNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL  110 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD--~l-~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~  110 (420)
                      ++.++.+   .+.+.|+|++.++..  .+ ..... +.++.+.+..++|+++.      ||- . +.+ +   .+.+++.
T Consensus        33 d~~~~a~---~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~------ggI-~-~~~-~---~~~~l~~   96 (244)
T 1vzw_A           33 SPLEAAL---AWQRSGAEWLHLVDLDAAFGTGDNR-ALIAEVAQAMDIKVELS------GGI-R-DDD-T---LAAALAT   96 (244)
T ss_dssp             CHHHHHH---HHHHTTCSEEEEEEHHHHHTSCCCH-HHHHHHHHHCSSEEEEE------SSC-C-SHH-H---HHHHHHT
T ss_pred             CHHHHHH---HHHHcCCCEEEEecCchhhcCCChH-HHHHHHHHhcCCcEEEE------CCc-C-CHH-H---HHHHHHc
Confidence            6555554   445679999999852  12 22233 55777777789999984      332 2 222 2   4455678


Q ss_pred             CCcEEEEEccc--ccchhHHHhhcCCCCcEEE--EEc-------ccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH
Q 014691          111 GADYIDVELQV--AREFNDSIRGKKPEKCKVI--VSS-------HNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI  179 (420)
Q Consensus       111 ~~d~iDiEl~~--~~~~~~~l~~~~~~~~kiI--~S~-------H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~  179 (420)
                      |+|.|=+-...  ..+.+.++....  +.+++  ++.       |.+...-.  +..+..+++.+.|+|.+=+-....+.
T Consensus        97 Gad~V~lg~~~l~~p~~~~~~~~~~--g~~~~~~l~~~~g~v~~~g~~~~~~--~~~e~~~~~~~~G~~~i~~~~~~~~~  172 (244)
T 1vzw_A           97 GCTRVNLGTAALETPEWVAKVIAEH--GDKIAVGLDVRGTTLRGRGWTRDGG--DLYETLDRLNKEGCARYVVTDIAKDG  172 (244)
T ss_dssp             TCSEEEECHHHHHCHHHHHHHHHHH--GGGEEEEEEEETTEECCSSSCCCCC--BHHHHHHHHHHTTCCCEEEEEC----
T ss_pred             CCCEEEECchHhhCHHHHHHHHHHc--CCcEEEEEEccCCEEEEcCcccCCC--CHHHHHHHHHhCCCCEEEEeccCccc
Confidence            99998774432  222333333211  12333  333       33222111  34555677777899865332211111


Q ss_pred             ----HHHHHHHHHhccCCCCEEEE
Q 014691          180 ----TDVARVFQITVHSQVPIIGL  199 (420)
Q Consensus       180 ----~D~~~ll~~~~~~~~p~I~~  199 (420)
                          -|...+.++.+..++|+|+.
T Consensus       173 ~~~g~~~~~~~~i~~~~~ipvia~  196 (244)
T 1vzw_A          173 TLQGPNLELLKNVCAATDRPVVAS  196 (244)
T ss_dssp             ---CCCHHHHHHHHHTCSSCEEEE
T ss_pred             ccCCCCHHHHHHHHHhcCCCEEEE
Confidence                12223333444457888875

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=87.82  E-value=0.24  Score=49.40  Aligned_cols=37  Identities=19%  Similarity=0.064  Sum_probs=32.8

Q ss_pred             cCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       379 ~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      ..+++|||.|| |+.|++++..|.+.|.+|+++.|+.+
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~  104 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADN  104 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSS
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCC
Confidence            45679999997 78999999999888889999999876

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=87.78  E-value=0.48  Score=49.26  Aligned_cols=39  Identities=26%  Similarity=0.382  Sum_probs=35.1

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      ..+.+|+|+|||+|-+|--++.+|+..|.+|+++.|++.
T Consensus       174 ~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          174 KSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            356789999999999999999999999999999999864

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=87.77  E-value=0.33  Score=49.94  Aligned_cols=34  Identities=15%  Similarity=0.146  Sum_probs=30.6

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .++|+|||+|-+|-.++..|...+++|+|++++.
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~   75 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRS   75 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSS
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCC
Confidence            4589999999999999999988889999999863

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=87.73  E-value=0.45  Score=48.17  Aligned_cols=32  Identities=19%  Similarity=0.264  Sum_probs=29.9

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      .+|+|||+|-+|.++++.|.+.|.+|+|+.++
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~   71 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEAR   71 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCC
Confidence            58999999999999999999999999999875

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=87.69  E-value=0.41  Score=49.84  Aligned_cols=39  Identities=21%  Similarity=0.282  Sum_probs=35.3

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      .++.+|+|+|||+|-+|--++.+|++.|.+|+++.|++.
T Consensus       187 ~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          187 VDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            456899999999999999999999999999999999863

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=87.65  E-value=0.52  Score=50.19  Aligned_cols=35  Identities=37%  Similarity=0.502  Sum_probs=31.8

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..++++|||+|.+|-+++..|.+.|.+|+|++++.
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~  406 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS  406 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            35789999999999999999999999999999863

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=87.63  E-value=27  Score=39.67  Aligned_cols=211  Identities=14%  Similarity=0.102  Sum_probs=119.4

Q ss_pred             HHHHHHHHHhhhhcCCCE--EEE----EecC---CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691           35 VDKMVVDMGKANASGADL--VEI----RLDG---LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVL  104 (420)
Q Consensus        35 ~~e~~~~~~~~~~~~~D~--vEl----RlD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (420)
                      .++.+.-++...+.|+|+  ||.    -.|.   +...++.+.++.+++.. +.++-.-+|..+-=|..+..+....+.+
T Consensus       572 ~~dkl~ia~~L~~~gv~~~~iE~~gga~f~~~~~f~~~~p~e~l~~~~~~~~~~~~~~l~R~~n~vg~~~~~~~~~~~~i  651 (1165)
T 2qf7_A          572 TYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKYFV  651 (1165)
T ss_dssp             HHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHHHCCCHHHHHHHHHHHCTTSEEEEEEETTTBTCSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCceEEEeCCCCccHHHHhhcCCCHHHHHHHHHHHchhhHHHHHhccccccccccCCchhHHHHH
Confidence            344444455555566676  886    3441   11224556677766554 3344333565433354455665666789


Q ss_pred             HHHHHhCCcEEEEEcccc--cchhHHHhhcCCCCcEE--EEEc--ccCCCCC---CHHHHHHHHHHHHHcCCCEEEEEee
Q 014691          105 RLAMELGADYIDVELQVA--REFNDSIRGKKPEKCKV--IVSS--HNYQYTP---SVEDLSNLVARIQASGADIVKFATT  175 (420)
Q Consensus       105 ~~~~~~~~d~iDiEl~~~--~~~~~~l~~~~~~~~ki--I~S~--H~f~~tP---~~~el~~~~~~~~~~gaDivKia~~  175 (420)
                      +++++.|++.+-|=....  +.+...+...+..+..+  -+||  |.++.+-   +.+.+.+..+++.+.|||++-|+=|
T Consensus       652 ~~a~~~g~d~irif~sl~~~~~~~~~i~~~~~~g~~v~~~i~~~~~~~d~~r~~~~~~~~~~~~~~~~~~Ga~~i~l~DT  731 (1165)
T 2qf7_A          652 RQAAKGGIDLFRVFDCLNWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAVKDM  731 (1165)
T ss_dssp             HHHHHHTCCEEEEECTTCCGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTSGGGCHHHHHHHHHHHHHTTCSEEEEEET
T ss_pred             HHHHhcCcCEEEEEeeHHHHHHHHHHHHHHHhccceEEEEEEEeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCc
Confidence            999999999888733221  11111121222233333  3343  3232211   4567899999999999999999877


Q ss_pred             c--CCHHHHHHHHHHhcc-CCCCEEEE--ecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691          176 A--LDITDVARVFQITVH-SQVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (420)
Q Consensus       176 ~--~s~~D~~~ll~~~~~-~~~p~I~~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~  246 (420)
                      .  -++.++.++.+.+.. .+.|+-..  +.--++..+=+..-.-|....=+++..- .--+||++++++.-.++.
T Consensus       732 ~G~~~P~~~~~lv~~l~~~~~~~i~~H~Hnd~GlAvAn~laAv~aGa~~vd~ti~Gl-Ge~~Gn~~le~vv~~L~~  806 (1165)
T 2qf7_A          732 AGLLKPAAAKVLFKALREATGLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAMDAL-SGNTSQPCLGSIVEALSG  806 (1165)
T ss_dssp             TCCCCHHHHHHHHHHHHHHCSSCEEEEECBTTSCHHHHHHHHHHTTCSEEEEBCGGG-CSBTSCCBHHHHHHHHTT
T ss_pred             cCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHhCCCEEEeccccc-CCCccchhHHHHHHHHHh
Confidence            6  468898888876543 35665543  3444455555555555554433444321 123788877776655553

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=87.62  E-value=16  Score=33.20  Aligned_cols=150  Identities=17%  Similarity=0.104  Sum_probs=76.6

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 014691           33 ESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA  112 (420)
Q Consensus        33 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~  112 (420)
                      .|.+++..-++++.+.|++.+=+--.+.      ......+.  +.++.-.. ...-|-.   ..+.+..-.+.+.+.|+
T Consensus        17 ~t~~~i~~l~~~a~~~g~~~v~v~~~~v------~~~~~~l~--~v~v~~v~-~~P~g~~---~~~~k~~~~~~A~~~Ga   84 (225)
T 1mzh_A           17 LSEKEIEEFVLKSEELGIYAVCVNPYHV------KLASSIAK--KVKVCCVI-GFPLGLN---KTSVKVKEAVEAVRDGA   84 (225)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEECGGGH------HHHHHHCS--SSEEEEEE-STTTCCS---CHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhCCeEEEECHHHH------HHHHHHhc--CCceeeEe-cCCCCcc---chhhhHHHHHHHHHcCC
Confidence            3677777777777778888765222211      11122222  44444222 1112211   23444455678889999


Q ss_pred             cEEEEEccccc-------ch---hHHHhhc-CCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec----C
Q 014691          113 DYIDVELQVAR-------EF---NDSIRGK-KPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA----L  177 (420)
Q Consensus       113 d~iDiEl~~~~-------~~---~~~l~~~-~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~----~  177 (420)
                      |.||+.++...       ..   ++.+... .+--.|+|+-.-++    +.+++.+..+.+.+.|+|.+|.-+--    .
T Consensus        85 d~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~pv~vKvi~e~~~l----~~~~~~~~a~~a~eaGad~I~tstg~~~gga  160 (225)
T 1mzh_A           85 QELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYL----NEEEIKKAVEICIEAGADFIKTSTGFAPRGT  160 (225)
T ss_dssp             SEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGC----CHHHHHHHHHHHHHHTCSEEECCCSCSSSCC
T ss_pred             CEEEEEecHHHHhcCChHHHHHHHHHHHHHhcCceEEEEEeCCCC----CHHHHHHHHHHHHHhCCCEEEECCCCCCCCC
Confidence            99998776421       11   2223222 11223444332222    34567888888888899999665411    1


Q ss_pred             CHHHHHHHHHHhccCCCCEEEE
Q 014691          178 DITDVARVFQITVHSQVPIIGL  199 (420)
Q Consensus       178 s~~D~~~ll~~~~~~~~p~I~~  199 (420)
                      +.+++..+.+.+. .++|+|+.
T Consensus       161 ~~~~i~~v~~~v~-~~ipVia~  181 (225)
T 1mzh_A          161 TLEEVRLIKSSAK-GRIKVKAS  181 (225)
T ss_dssp             CHHHHHHHHHHHT-TSSEEEEE
T ss_pred             CHHHHHHHHHHhC-CCCcEEEE
Confidence            3444444433321 24555544

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=87.61  E-value=0.51  Score=50.22  Aligned_cols=34  Identities=24%  Similarity=0.313  Sum_probs=31.5

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      .+++|+|||+|.+|.++++.|.+.|.+|+|+.+.
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~  139 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR  139 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            4689999999999999999999999999999875

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=87.57  E-value=0.55  Score=49.98  Aligned_cols=33  Identities=24%  Similarity=0.343  Sum_probs=30.8

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..|+|||+|.+|.++|++|++.|++|.|+.+..
T Consensus        22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   54 (641)
T 3cp8_A           22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDL   54 (641)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEecc
Confidence            579999999999999999999999999999874

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=87.54  E-value=0.38  Score=54.04  Aligned_cols=34  Identities=21%  Similarity=0.190  Sum_probs=31.6

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      .+++|+|||+|.+|.++++.|.+.|. +|+|+.|.
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~  220 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQ  220 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            36789999999999999999999999 79999986

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1

Probab=87.37  E-value=14  Score=34.90  Aligned_cols=151  Identities=17%  Similarity=0.219  Sum_probs=87.5

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCC----CCchhHHHHH---Hh---hCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLKN----FNPRENIKTL---IK---ESPVPTLFTYRPIWEGGQYDGDENERVDV  103 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~----~~~~~~l~~l---~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~l  103 (420)
                      +.+++++.+++..+.|||+|.+=...-..    .+..+++.++   ++   ..+.|+-  +-|            .+.+.
T Consensus        27 ~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~~~piS--IDT------------~~~~v   92 (280)
T 1eye_A           27 DLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITVS--IDT------------MRADV   92 (280)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHTTCCEE--EEC------------SCHHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEE--EeC------------CCHHH
Confidence            68899999999999999999998765321    1112233322   11   1266653  332            12358


Q ss_pred             HHHHHHhCCcEE-EEEccc-ccchhHHHhhcCCCCcEEEEEcccCCCCCC----------------HHHHHHHHHHHHHc
Q 014691          104 LRLAMELGADYI-DVELQV-AREFNDSIRGKKPEKCKVIVSSHNYQYTPS----------------VEDLSNLVARIQAS  165 (420)
Q Consensus       104 l~~~~~~~~d~i-DiEl~~-~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~----------------~~el~~~~~~~~~~  165 (420)
                      .++|++.|+++| ||-... .++..+-+.   +.+..+|+.+ . +++|.                .+++.+.++.+.+.
T Consensus        93 a~aAl~aGa~iINdvsg~~~d~~m~~~~a---~~~~~vVlmh-~-~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~  167 (280)
T 1eye_A           93 ARAALQNGAQMVNDVSGGRADPAMGPLLA---EADVPWVLMH-W-RAVSADTPHVPVRYGNVVAEVRADLLASVADAVAA  167 (280)
T ss_dssp             HHHHHHTTCCEEEETTTTSSCTTHHHHHH---HHTCCEEEEC-C-CCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCEEEECCCCCCCHHHHHHHH---HhCCeEEEEc-C-CCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHc
Confidence            889999999887 554332 344443332   2466777764 3 34442                34567778888888


Q ss_pred             CCCEEEEEe-----ecCCHHHHHHHHHHhcc---CCCCEEEEecCCc
Q 014691          166 GADIVKFAT-----TALDITDVARVFQITVH---SQVPIIGLVMGER  204 (420)
Q Consensus       166 gaDivKia~-----~~~s~~D~~~ll~~~~~---~~~p~I~~~MG~~  204 (420)
                      |.+-=+|..     ..++.++++.+++-+..   .+.|+. ++.+..
T Consensus       168 Gi~~~~IilDPg~Gf~k~~~~n~~ll~~l~~~~~~g~Pvl-~G~Srk  213 (280)
T 1eye_A          168 GVDPARLVLDPGLGFAKTAQHNWAILHALPELVATGIPVL-VGASRK  213 (280)
T ss_dssp             TCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHHTTSSCBE-ECCTTC
T ss_pred             CCChhhEEEECCCCcccCHHHHHHHHHHHHHhhcCCCCEE-EEecch
Confidence            854113443     45778999888876443   466643 344443

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=87.35  E-value=0.54  Score=49.98  Aligned_cols=33  Identities=33%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..|+|||+|.+|.++|.+|++.|++|.|+.++.
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~   60 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNA   60 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecc
Confidence            469999999999999999999999999999874

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=87.27  E-value=0.52  Score=51.07  Aligned_cols=38  Identities=24%  Similarity=0.297  Sum_probs=34.4

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      -++|.|||||-+|+.+++.++..|++|++++++++..+
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~  353 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLD  353 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHH
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhh
Confidence            37999999999999999999999999999999976543

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=87.25  E-value=1.1  Score=45.50  Aligned_cols=50  Identities=26%  Similarity=0.258  Sum_probs=40.0

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEE
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIA  410 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~  410 (420)
                      ++|.+..++..+...       +.+++||+|+|-|.|-+|..++..|.++|++|+.+
T Consensus       215 g~Gv~~~~~~~~~~~-------~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVav  264 (450)
T 4fcc_A          215 GYGLVYFTEAMLKRH-------GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITA  264 (450)
T ss_dssp             HHHHHHHHHHHHHHT-------TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             eeeHHHHHHHHHHHc-------CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEE
Confidence            677777776665432       35789999999999999999999999999965543

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=87.19  E-value=18  Score=34.50  Aligned_cols=119  Identities=16%  Similarity=0.117  Sum_probs=72.1

Q ss_pred             HHHhhhhcCCCEEEEEecCCCCCCchhH---HHHHHh---hCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcE
Q 014691           41 DMGKANASGADLVEIRLDGLKNFNPREN---IKTLIK---ESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADY  114 (420)
Q Consensus        41 ~~~~~~~~~~D~vElRlD~l~~~~~~~~---l~~l~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~  114 (420)
                      +++.++..|||.|=+++..=.+. ..+.   +..+.+   ...+|+|+-.   ..|+....+++.-....+.+.++|+||
T Consensus       130 ~ve~Av~~GAdaV~~~i~~Gs~~-~~~~l~~i~~v~~~a~~~GlpvIie~---~~G~~~~~d~e~i~~aariA~elGAD~  205 (295)
T 3glc_A          130 SMDDAVRLNSCAVAAQVYIGSEY-EHQSIKNIIQLVDAGMKVGMPTMAVT---GVGKDMVRDQRYFSLATRIAAEMGAQI  205 (295)
T ss_dssp             CHHHHHHTTCSEEEEEECTTSTT-HHHHHHHHHHHHHHHHTTTCCEEEEE---CC----CCSHHHHHHHHHHHHHTTCSE
T ss_pred             HHHHHHHCCCCEEEEEEECCCCc-HHHHHHHHHHHHHHHHHcCCEEEEEC---CCCCccCCCHHHHHHHHHHHHHhCCCE
Confidence            45556678999999998865332 2223   334433   3478988742   235444434432334677888999999


Q ss_pred             EEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 014691          115 IDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIV  170 (420)
Q Consensus       115 iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDiv  170 (420)
                      |=..+.  .+.++++...  ..++||++=-   ...+.++..+.+.++.+.||+-+
T Consensus       206 VKt~~t--~e~~~~vv~~--~~vPVv~~GG---~~~~~~~~l~~v~~ai~aGA~Gv  254 (295)
T 3glc_A          206 IKTYYV--EKGFERIVAG--CPVPIVIAGG---KKLPEREALEMCWQAIDQGASGV  254 (295)
T ss_dssp             EEEECC--TTTHHHHHHT--CSSCEEEECC---SCCCHHHHHHHHHHHHHTTCSEE
T ss_pred             EEeCCC--HHHHHHHHHh--CCCcEEEEEC---CCCCHHHHHHHHHHHHHhCCeEE
Confidence            999864  3445666532  3567887632   11145788888888888899844

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=87.10  E-value=0.51  Score=49.07  Aligned_cols=39  Identities=26%  Similarity=0.317  Sum_probs=34.9

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      .++.+|+|+|||+|-+|--++.+|++.|.+|+++.|++.
T Consensus       181 ~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          181 VDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             cccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            456789999999999999999999999889999999863

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=86.85  E-value=6.4  Score=36.28  Aligned_cols=146  Identities=18%  Similarity=0.154  Sum_probs=87.2

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (420)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~  111 (420)
                      ..+.+++.+-++++.+.+++.|=+.--+.      .... .++..++. |.|+=.-..|-.   +.+.+..-.+.|++.|
T Consensus        25 ~~t~~~i~~lc~eA~~~~~~aVcV~p~~v------~~a~-~l~~~~v~-v~tVigFP~G~~---~~~~K~~E~~~Ai~~G   93 (231)
T 3ndo_A           25 EATPSDVTALVDEAADLGVFAVCVSPPLV------SVAA-GVAPSGLA-IAAVAGFPSGKH---VPGIKATEAELAVAAG   93 (231)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEECGGGH------HHHH-HHCCTTCE-EEEEESTTTCCS---CHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHhCCcEEEECHHHH------HHHH-HhcCCCCe-EEEEecCCCCCC---cHHHHHHHHHHHHHcC
Confidence            34677888878888777777765532221      1233 33333433 344433333322   3366666678899999


Q ss_pred             CcEEEEEcccc-------cchhHHH---hhc-CCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe-----e
Q 014691          112 ADYIDVELQVA-------REFNDSI---RGK-KPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT-----T  175 (420)
Q Consensus       112 ~d~iDiEl~~~-------~~~~~~l---~~~-~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~-----~  175 (420)
                      +|-||+=++..       +...+++   ... +....|+|+--.......+.+++.+..+-..+.|||+||--+     -
T Consensus        94 AdEIDmVinig~lk~g~~~~v~~ei~~v~~a~~~~~lKvIiEt~~L~~~~t~eei~~a~~ia~~aGADfVKTSTGf~~~~  173 (231)
T 3ndo_A           94 ATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAATLKVIVESAALLEFSGEPLLADVCRVARDAGADFVKTSTGFHPSG  173 (231)
T ss_dssp             CSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCHHHHHHHTCHHHHHHHHHHHHHTTCSEEECCCSCCTTC
T ss_pred             CCEEEEEeehHhhhcccHHHHHHHHHHHHHHccCCceEEEEECcccCCCCCHHHHHHHHHHHHHHCcCEEEcCCCCCCCC
Confidence            99999977652       1122333   222 223568887654331112457788888888899999999874     2


Q ss_pred             cCCHHHHHHHHHH
Q 014691          176 ALDITDVARVFQI  188 (420)
Q Consensus       176 ~~s~~D~~~ll~~  188 (420)
                      ..+.+|+..+.+.
T Consensus       174 gAt~edv~lm~~~  186 (231)
T 3ndo_A          174 GASVQAVEIMART  186 (231)
T ss_dssp             SCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            3567888666555

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=86.78  E-value=3.5  Score=39.97  Aligned_cols=79  Identities=20%  Similarity=0.247  Sum_probs=49.6

Q ss_pred             HHHHHHhhhhcCCCEEEEEecC------------------CCCC-Cc-----hhHHHHHHhhCCCcEEEEeccC--CCCC
Q 014691           38 MVVDMGKANASGADLVEIRLDG------------------LKNF-NP-----RENIKTLIKESPVPTLFTYRPI--WEGG   91 (420)
Q Consensus        38 ~~~~~~~~~~~~~D~vElRlD~------------------l~~~-~~-----~~~l~~l~~~~~~PiI~T~R~~--~eGG   91 (420)
                      ...-++++.+.|.|.||+-.-+                  +... +.     .+.++.+++..+.|+.+-++..  .+||
T Consensus       146 ~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~g  225 (338)
T 1z41_A          146 FKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKG  225 (338)
T ss_dssp             HHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTS
T ss_pred             HHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCCC
Confidence            3444555667899999997642                  1110 00     1234445555678887777653  2333


Q ss_pred             CCCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 014691           92 QYDGDENERVDVLRLAMELGADYIDVEL  119 (420)
Q Consensus        92 ~~~~~~~~~~~ll~~~~~~~~d~iDiEl  119 (420)
                      .   +.++..++.+.+.+.|+|||++--
T Consensus       226 ~---~~~~~~~~a~~l~~~Gvd~i~v~~  250 (338)
T 1z41_A          226 L---DIADHIGFAKWMKEQGVDLIDCSS  250 (338)
T ss_dssp             C---CHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             C---CHHHHHHHHHHHHHcCCCEEEEec
Confidence            2   456778888888899999999854

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=86.77  E-value=13  Score=34.22  Aligned_cols=159  Identities=17%  Similarity=0.092  Sum_probs=78.8

Q ss_pred             HHHHHhhhhcCCCEEEEEecCCCC----CCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcE
Q 014691           39 VVDMGKANASGADLVEIRLDGLKN----FNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADY  114 (420)
Q Consensus        39 ~~~~~~~~~~~~D~vElRlD~l~~----~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~  114 (420)
                      .+.++.+.+.|+|.++++ |.-..    ....+.++.+.+..++|+++-      ||..+ .+  .   ++.+++.|+|.
T Consensus        33 ~~~a~~~~~~Ga~~i~v~-d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~------ggi~~-~~--~---i~~~~~~Gad~   99 (266)
T 2w6r_A           33 RDWVVEVEKRGAGEILLT-SIDRDGTKSGYDTEMIRFVRPLTTLPIIAS------GGAGK-ME--H---FLEAFLAGADK   99 (266)
T ss_dssp             HHHHHHHHHHTCSEEEEE-ETTTSSCSSCCCHHHHHHHGGGCCSCEEEE------SCCCS-TH--H---HHHHHHHTCSE
T ss_pred             HHHHHHHHHCCCCEEEEE-ecCcccCCCcccHHHHHHHHHhcCCCEEEE------CCCCC-HH--H---HHHHHHcCCcH
Confidence            333445556799999995 53221    112456777777779999983      44322 12  2   23445568887


Q ss_pred             EEEEccc-----ccchhHHHhhcCCC--CcEEEEEcccC--C-----CCCCH-----HHHHHHHHHHHHcCCCEEEEEee
Q 014691          115 IDVELQV-----AREFNDSIRGKKPE--KCKVIVSSHNY--Q-----YTPSV-----EDLSNLVARIQASGADIVKFATT  175 (420)
Q Consensus       115 iDiEl~~-----~~~~~~~l~~~~~~--~~kiI~S~H~f--~-----~tP~~-----~el~~~~~~~~~~gaDivKia~~  175 (420)
                      |=+--..     +.+.++++... .+  ..+++++....  +     .+-.+     ....+..+++.+.|++.+=+...
T Consensus       100 v~lg~~~~~~~~~~~~~~~~~~~-~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~  178 (266)
T 2w6r_A          100 ALAASVFHFREIDMRELKEYLKK-HGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSI  178 (266)
T ss_dssp             EECCCCC------CHHHHHHCC-----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEET
T ss_pred             hhhhHHHHhCCCCHHHHHHHHHH-cCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCCCEEEEEee
Confidence            6553221     22334444321 12  13555554321  0     01111     12455667777889987755322


Q ss_pred             cCCH----HHHHHHHHHhccCCCCEEEE-ecCCcchhhhhh
Q 014691          176 ALDI----TDVARVFQITVHSQVPIIGL-VMGERGLISRIL  211 (420)
Q Consensus       176 ~~s~----~D~~~ll~~~~~~~~p~I~~-~MG~~G~~SRi~  211 (420)
                      .++.    -|...+.++.+..++|+|+. +.+....+-+++
T Consensus       179 ~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~  219 (266)
T 2w6r_A          179 DRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF  219 (266)
T ss_dssp             TTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHH
T ss_pred             cCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHH
Confidence            2211    23333334444558898875 233334444544

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=86.73  E-value=2.6  Score=41.13  Aligned_cols=88  Identities=18%  Similarity=0.236  Sum_probs=54.4

Q ss_pred             eecCCCHHHHHHHH----HhhhhcCCCEEEEEecC------------------CCCC-Cc-----hhHHHHHHhhCCCcE
Q 014691           29 PIMGESVDKMVVDM----GKANASGADLVEIRLDG------------------LKNF-NP-----RENIKTLIKESPVPT   80 (420)
Q Consensus        29 ~l~~~~~~e~~~~~----~~~~~~~~D~vElRlD~------------------l~~~-~~-----~~~l~~l~~~~~~Pi   80 (420)
                      .++..++++++++.    +++.+.|.|.||+-.-+                  +... +.     .+.++.+++..+.|+
T Consensus       133 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv  212 (340)
T 3gr7_A          133 EMTKADIEETVQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPL  212 (340)
T ss_dssp             ECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCE
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCce
Confidence            45555666555543    34456799999998663                  1110 00     123444555568888


Q ss_pred             EEEeccC--CCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 014691           81 LFTYRPI--WEGGQYDGDENERVDVLRLAMELGADYIDVEL  119 (420)
Q Consensus        81 I~T~R~~--~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl  119 (420)
                      .+-++..  .+||.   +.++..++.+.+.+.|+|||+|-.
T Consensus       213 ~vRls~~~~~~~g~---~~~~~~~la~~L~~~Gvd~i~vs~  250 (340)
T 3gr7_A          213 FVRISASDYHPDGL---TAKDYVPYAKRMKEQGVDLVDVSS  250 (340)
T ss_dssp             EEEEESCCCSTTSC---CGGGHHHHHHHHHHTTCCEEEEEC
T ss_pred             EEEeccccccCCCC---CHHHHHHHHHHHHHcCCCEEEEec
Confidence            7766643  12342   346677888888899999999853

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=86.67  E-value=0.56  Score=46.89  Aligned_cols=34  Identities=38%  Similarity=0.572  Sum_probs=30.6

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ...++|||+|-+|.++++.|++.|.+|+|+.+..
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~   62 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRP   62 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEeccC
Confidence            4589999999999999999999999999998753

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=86.64  E-value=1  Score=45.98  Aligned_cols=52  Identities=13%  Similarity=0.141  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEE-EEeC
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANR  412 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~-v~nR  412 (420)
                      ++|.+..++..+...       +.+++|++|+|-|.|.+|..++..|.++|++|+ |.+.
T Consensus       232 g~Gv~~~~~~~l~~~-------G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~  284 (470)
T 2bma_A          232 GYGLVYFVLEVLKSL-------NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDS  284 (470)
T ss_dssp             HHHHHHHHHHHHHTT-------TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEET
T ss_pred             hHHHHHHHHHHHHhc-------cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeC
Confidence            678777777766432       356889999999999999999999999999644 7775

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=86.55  E-value=0.41  Score=50.69  Aligned_cols=34  Identities=26%  Similarity=0.320  Sum_probs=30.8

Q ss_pred             CEEEEEccchHHHHHHHHHHh-CCCeEEEEeCChh
Q 014691          382 KLFVVIGAGGAGKALAYGAKA-KGARVVIANRTYE  415 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~-~g~~i~v~nR~~~  415 (420)
                      ..|+|||+|.+|.+++..|++ .|++|.|+.|...
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~   67 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEG   67 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            469999999999999999999 8999999998643

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=86.53  E-value=0.53  Score=49.02  Aligned_cols=34  Identities=26%  Similarity=0.202  Sum_probs=31.1

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+|+|||+|.+|.++++.|.+.|.+|+|+.+..
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~   54 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAAS   54 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4589999999999999999999999999999853

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=86.43  E-value=0.48  Score=45.34  Aligned_cols=37  Identities=11%  Similarity=0.022  Sum_probs=29.6

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCC--CeEEEEeCCh
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKG--ARVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g--~~i~v~nR~~  414 (420)
                      ..++++|||.|| |+.|++++..|.+.|  ++|+..+|..
T Consensus        21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~   60 (346)
T 4egb_A           21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALT   60 (346)
T ss_dssp             ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCC
T ss_pred             ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccc
Confidence            356789999998 889999999999999  4788887753

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=86.42  E-value=1.1  Score=41.04  Aligned_cols=38  Identities=16%  Similarity=0.165  Sum_probs=27.0

Q ss_pred             CCEEEEEccchHHHHHHHH--HHhCCC-eEEEEeCChhhhh
Q 014691          381 GKLFVVIGAGGAGKALAYG--AKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~a--L~~~g~-~i~v~nR~~~ka~  418 (420)
                      ..+++|+|+|.+|++.+.+  ....|+ -+-+++++++++.
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g  125 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIG  125 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTT
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHH
Confidence            3579999999999999885  345577 5779999988765

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=86.36  E-value=6.4  Score=35.81  Aligned_cols=88  Identities=23%  Similarity=0.303  Sum_probs=53.5

Q ss_pred             cEEEEeec----CCCHHHHHHHHHhhhhcCCCEEEEEecC--CCCCCch---hHHHHHHhhCCCcEEEEeccCCCCCCCC
Q 014691           24 TLICVPIM----GESVDKMVVDMGKANASGADLVEIRLDG--LKNFNPR---ENIKTLIKESPVPTLFTYRPIWEGGQYD   94 (420)
Q Consensus        24 ~~icv~l~----~~~~~e~~~~~~~~~~~~~D~vElRlD~--l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~   94 (420)
                      ..+|..+.    ....+....+++++.+.|+|.||+-++.  +...+..   +.++.+++..+ |+++-+.-  |.+.  
T Consensus        54 v~v~~v~~~P~g~~~~~~k~~~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~-pv~vKvi~--e~~~--  128 (225)
T 1mzh_A           54 VKVCCVIGFPLGLNKTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETP-SAVHKVIV--ETPY--  128 (225)
T ss_dssp             SEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCT-TSEEEEEC--CGGG--
T ss_pred             CceeeEecCCCCccchhhhHHHHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhc-CceEEEEE--eCCC--
Confidence            35665443    2345555566777888999999965553  1111221   23555555556 87766621  1122  


Q ss_pred             CCHHHHHHHHHHHHHhCCcEEE
Q 014691           95 GDENERVDVLRLAMELGADYID  116 (420)
Q Consensus        95 ~~~~~~~~ll~~~~~~~~d~iD  116 (420)
                      .++++-.++.+.+.+.|+|+|.
T Consensus       129 l~~~~~~~~a~~a~eaGad~I~  150 (225)
T 1mzh_A          129 LNEEEIKKAVEICIEAGADFIK  150 (225)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEE
T ss_pred             CCHHHHHHHHHHHHHhCCCEEE
Confidence            3666777888899999999993

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}

Probab=86.24  E-value=11  Score=34.10  Aligned_cols=119  Identities=13%  Similarity=0.018  Sum_probs=66.8

Q ss_pred             cCCCHHHHHHHHHhhhhcCCCEEEEEecCCC-CCCc--hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHH
Q 014691           31 MGESVDKMVVDMGKANASGADLVEIRLDGLK-NFNP--RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLA  107 (420)
Q Consensus        31 ~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~-~~~~--~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~  107 (420)
                      ...++++.++.+.   +.|.|.||++.+.+. +.++  .+.++..+++..+.+....-...      .+.+...+.++.|
T Consensus        28 ~~~~~~~~l~~~~---~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~------~~~~~~~~~i~~A   98 (257)
T 3lmz_A           28 VNFDLDTTLKTLE---RLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM------KSEEEIDRAFDYA   98 (257)
T ss_dssp             TTSCHHHHHHHHH---HTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE------CSHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHH---HhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc------CCHHHHHHHHHHH
Confidence            3346677766554   569999999998653 1122  23455666667776543211100      2445566788889


Q ss_pred             HHhCCcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCC--CCHHHHHHHHH
Q 014691          108 MELGADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYT--PSVEDLSNLVA  160 (420)
Q Consensus       108 ~~~~~d~iDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~t--P~~~el~~~~~  160 (420)
                      .++|+.+|=+.-.  .+.++++.. +++.++++.+-.|+++.+  .+.+++.++++
T Consensus        99 ~~lGa~~v~~~p~--~~~l~~l~~~a~~~gv~l~lEn~~~~~~~~~~~~~~~~ll~  152 (257)
T 3lmz_A           99 KRVGVKLIVGVPN--YELLPYVDKKVKEYDFHYAIHLHGPDIKTYPDATDVWVHTK  152 (257)
T ss_dssp             HHHTCSEEEEEEC--GGGHHHHHHHHHHHTCEEEEECCCTTCSSSCSHHHHHHHHT
T ss_pred             HHhCCCEEEecCC--HHHHHHHHHHHHHcCCEEEEecCCCcccccCCHHHHHHHHH
Confidence            9999998877532  233444442 233466666655543222  23444444443

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=86.01  E-value=0.68  Score=50.96  Aligned_cols=35  Identities=23%  Similarity=0.278  Sum_probs=31.9

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+++|+|||+|-+|.++++.|.+.|.+|+|+.+..
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~  311 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD  311 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            46899999999999999999999999999998753

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=85.92  E-value=0.7  Score=46.97  Aligned_cols=39  Identities=18%  Similarity=0.241  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhC---CCeEEEEeCChhh
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAK---GARVVIANRTYEN  416 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~---g~~i~v~nR~~~k  416 (420)
                      ..++++|||.|| |+.|+.++..|.+.   |.+|+++.|+.+.
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~  112 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESD  112 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence            457899999996 77999999999988   8899999997654

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=85.88  E-value=0.51  Score=46.49  Aligned_cols=39  Identities=23%  Similarity=0.230  Sum_probs=34.0

Q ss_pred             CCCEEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVI--GAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlvi--GaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|.+|||+  |+|++|.+++..+...|++|+.+.++++|.+
T Consensus       170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~  210 (379)
T 3iup_A          170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQAD  210 (379)
T ss_dssp             TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            46789999  7899999999988889999999999887754

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=85.87  E-value=0.45  Score=49.89  Aligned_cols=33  Identities=30%  Similarity=0.377  Sum_probs=30.0

Q ss_pred             CEEEEEccchHHHHHHHHHHhC------CCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAK------GARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~------g~~i~v~nR~~  414 (420)
                      ..|+|||+|.+|.++|..|++.      |.+|.|+.|..
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~   74 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   74 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCC
Confidence            3599999999999999999998      99999999864

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=85.87  E-value=0.54  Score=46.19  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=29.7

Q ss_pred             CEEEEEccchHHHHHHHHHHhC--CCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAK--GARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~--g~~i~v~nR~~  414 (420)
                      ..|+|||+|.+|.++++.|++.  |.+|.|+.+..
T Consensus        80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~  114 (344)
T 3jsk_A           80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGV  114 (344)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSS
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            3699999999999999999987  88999999864

>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*

Probab=85.84  E-value=14  Score=35.18  Aligned_cols=139  Identities=17%  Similarity=0.170  Sum_probs=85.9

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCC----CCchhHHHHHH---h---hCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLKN----FNPRENIKTLI---K---ESPVPTLFTYRPIWEGGQYDGDENERVDV  103 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~----~~~~~~l~~l~---~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~l  103 (420)
                      +.+++++.+++..+.|||+|.+=...-.+    .+..++++++.   +   ..+.||-  +-|            .+.+.
T Consensus        44 ~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~~vpiS--IDT------------~~~~V  109 (294)
T 2y5s_A           44 ARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPLNVPLS--IDT------------YKPAV  109 (294)
T ss_dssp             CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGGGCSCEE--EEC------------CCHHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhCCCeEE--EEC------------CCHHH
Confidence            56788998998889999999999876432    23333444332   1   1256653  222            12358


Q ss_pred             HHHHHHhCCcEE-EEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCC----------------HHHHHHHHHHHHHcC
Q 014691          104 LRLAMELGADYI-DVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPS----------------VEDLSNLVARIQASG  166 (420)
Q Consensus       104 l~~~~~~~~d~i-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~----------------~~el~~~~~~~~~~g  166 (420)
                      .++|++.|+++| ||-....++..+ +.  .+.+..+|+.+ . +++|.                .+.+.+.++.+.+.|
T Consensus       110 a~aAl~aGa~iINdVsg~~d~~m~~-~~--a~~~~~vVlmh-~-~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~G  184 (294)
T 2y5s_A          110 MRAALAAGADLINDIWGFRQPGAID-AV--RDGNSGLCAMH-M-LGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRDAG  184 (294)
T ss_dssp             HHHHHHHTCSEEEETTTTCSTTHHH-HH--SSSSCEEEEEC-C-CEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCEEEECCCCCchHHHH-HH--HHhCCCEEEEC-C-CCCCccccccCCccccHHHHHHHHHHHHHHHHHHcC
Confidence            889999999887 565444333333 32  34678888874 3 33332                334667788888888


Q ss_pred             CCEEEEEe-----ecCCH-HHHHHHHHHhcc
Q 014691          167 ADIVKFAT-----TALDI-TDVARVFQITVH  191 (420)
Q Consensus       167 aDivKia~-----~~~s~-~D~~~ll~~~~~  191 (420)
                      .+-=+|..     ..++. ++++.+++-+..
T Consensus       185 i~~~~IilDPG~Gf~kt~~~~n~~ll~~l~~  215 (294)
T 2y5s_A          185 VAAERICVDPGFGFGKAVVDDNYALLAALPD  215 (294)
T ss_dssp             CCGGGEEEECCTTSSSCTTHHHHHHHHTGGG
T ss_pred             CChhhEEEeCCCcccccchHHHHHHHHHHHH
Confidence            54113443     34677 899888876543

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=85.80  E-value=0.99  Score=45.52  Aligned_cols=53  Identities=25%  Similarity=0.367  Sum_probs=43.1

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCe-EEEEeCC
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRT  413 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~-i~v~nR~  413 (420)
                      ++|.+..++..+...       +.+++|++|+|-|.|.+|+.++..|.++|++ |.|.+.+
T Consensus       201 g~Gv~~~~~~~~~~~-------g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~  254 (424)
T 3k92_A          201 AQGVTICIEEAVKKK-------GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDAN  254 (424)
T ss_dssp             HHHHHHHHHHHHHHT-------TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSS
T ss_pred             HHHHHHHHHHHHHHc-------CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            777777777665431       2568999999999999999999999999996 5788776

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=85.64  E-value=0.84  Score=38.52  Aligned_cols=37  Identities=22%  Similarity=0.308  Sum_probs=30.9

Q ss_pred             cCCCEEEEEcc----chHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          379 LAGKLFVVIGA----GGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       379 ~~~k~vlviGa----GGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      ++-+++.|||+    |-+|+.++..|.+.|++|+.+|++.+
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~   52 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYD   52 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCC
Confidence            34578999999    99999999999999999888887643

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=85.64  E-value=0.84  Score=43.80  Aligned_cols=37  Identities=24%  Similarity=0.390  Sum_probs=32.0

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+.+++++|+|+|.+|--++..|.+.|.+|+++.|..
T Consensus       163 ~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~  199 (369)
T 3d1c_A          163 NFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTT  199 (369)
T ss_dssp             GSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             hcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCC
Confidence            3467899999999999999999999999999999864

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=85.63  E-value=1  Score=44.03  Aligned_cols=34  Identities=29%  Similarity=0.390  Sum_probs=29.3

Q ss_pred             CCCEEEEEc-cchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       380 ~~k~vlviG-aGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      .|++|+|+| +|++|.+++..+...|++|+.+.++
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~~  217 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQ  217 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCh
Confidence            578999999 6999999999899999988777743

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=85.59  E-value=5.5  Score=36.14  Aligned_cols=146  Identities=15%  Similarity=0.246  Sum_probs=76.6

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEec--CCC-CCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHh
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLD--GLK-NFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL  110 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD--~l~-~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~  110 (420)
                      ++.++.+   .+.+.|+|++.++..  .+. .... +.++.+.+..++|+++.      ||- . +.+ +   .+.+++.
T Consensus        32 d~~~~a~---~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~------ggi-~-~~~-~---~~~~l~~   95 (244)
T 2y88_A           32 SAVDAAL---GWQRDGAEWIHLVDLDAAFGRGSNH-ELLAEVVGKLDVQVELS------GGI-R-DDE-S---LAAALAT   95 (244)
T ss_dssp             EHHHHHH---HHHHTTCSEEEEEEHHHHTTSCCCH-HHHHHHHHHCSSEEEEE------SSC-C-SHH-H---HHHHHHT
T ss_pred             CHHHHHH---HHHHcCCCEEEEEcCcccccCCChH-HHHHHHHHhcCCcEEEE------CCC-C-CHH-H---HHHHHHc
Confidence            5555554   445679999999852  122 2222 56777777789999984      333 2 322 2   4455678


Q ss_pred             CCcEEEEEccc--ccchhHHHhhcCCCCcEEE--EEcc-----------cCCCCCCHHHHHHHHHHHHHcCCCEEEEEee
Q 014691          111 GADYIDVELQV--AREFNDSIRGKKPEKCKVI--VSSH-----------NYQYTPSVEDLSNLVARIQASGADIVKFATT  175 (420)
Q Consensus       111 ~~d~iDiEl~~--~~~~~~~l~~~~~~~~kiI--~S~H-----------~f~~tP~~~el~~~~~~~~~~gaDivKia~~  175 (420)
                      |+|.|-+-...  ..+.+.++....  +.+++  ++.+           .+....  ++..+..+++.+.|+|.+=+-..
T Consensus        96 Gad~V~lg~~~l~~p~~~~~~~~~~--g~~~~~~ld~~~~~~~~~v~~~g~~~~~--~~~~e~~~~~~~~G~~~i~~~~~  171 (244)
T 2y88_A           96 GCARVNVGTAALENPQWCARVIGEH--GDQVAVGLDVQIIDGEHRLRGRGWETDG--GDLWDVLERLDSEGCSRFVVTDI  171 (244)
T ss_dssp             TCSEEEECHHHHHCHHHHHHHHHHH--GGGEEEEEEEEEETTEEEEEEGGGTEEE--EEHHHHHHHHHHTTCCCEEEEET
T ss_pred             CCCEEEECchHhhChHHHHHHHHHc--CCCEEEEEeccccCCCCEEEECCccCCC--CCHHHHHHHHHhCCCCEEEEEec
Confidence            99998775432  222333333211  12232  2322           221111  14566677777889986633321


Q ss_pred             cCC----HHHHHHHHHHhccCCCCEEEE
Q 014691          176 ALD----ITDVARVFQITVHSQVPIIGL  199 (420)
Q Consensus       176 ~~s----~~D~~~ll~~~~~~~~p~I~~  199 (420)
                      ..+    .-|...+.++.+..++|+|+.
T Consensus       172 ~~~~~~~g~~~~~~~~l~~~~~ipvia~  199 (244)
T 2y88_A          172 TKDGTLGGPNLDLLAGVADRTDAPVIAS  199 (244)
T ss_dssp             TTTTTTSCCCHHHHHHHHTTCSSCEEEE
T ss_pred             CCccccCCCCHHHHHHHHHhCCCCEEEE
Confidence            111    113333344444457788775

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=85.54  E-value=0.78  Score=44.76  Aligned_cols=39  Identities=26%  Similarity=0.256  Sum_probs=35.2

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      ..+.||++.|+|.|..|++++..+..+|++|..++|...
T Consensus       137 ~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~  175 (334)
T 3kb6_A          137 RELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKR  175 (334)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccc
Confidence            467899999999999999999999999999999998643

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=85.46  E-value=25  Score=33.29  Aligned_cols=118  Identities=16%  Similarity=0.199  Sum_probs=77.5

Q ss_pred             HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccccc--------------chhHHHh---
Q 014691           68 NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR--------------EFNDSIR---  130 (420)
Q Consensus        68 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~--------------~~~~~l~---  130 (420)
                      .++.+.+..++|+|+-.-+    | |- +.+.-.+..+..++.|++.|-||-...+              +....+.   
T Consensus        73 ~~~~I~r~~~~PviaD~d~----G-yg-~~~~~~~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~  146 (287)
T 3b8i_A           73 QATRIGRVARLPVIADADH----G-YG-NALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAAL  146 (287)
T ss_dssp             HHHHHHTTCSSCEEEECTT----C-SS-SHHHHHHHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCEEEECCC----C-CC-CHHHHHHHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHH
Confidence            3455556678998877654    5 43 6666667777888899999999987531              2333333   


Q ss_pred             hc-CCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEE
Q 014691          131 GK-KPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPII  197 (420)
Q Consensus       131 ~~-~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I  197 (420)
                      .+ ..++.+|+.=- +- .....+++.+..+...+.|||.+=+=. ..+.++..+   +....++|++
T Consensus       147 ~a~~~~~~~i~aRt-da-a~~gl~~ai~Ra~ay~eAGAd~i~~e~-~~~~~~~~~---i~~~~~~P~i  208 (287)
T 3b8i_A          147 EARVDPALTIIART-NA-ELIDVDAVIQRTLAYQEAGADGICLVG-VRDFAHLEA---IAEHLHIPLM  208 (287)
T ss_dssp             HHCCSTTSEEEEEE-ET-TTSCHHHHHHHHHHHHHTTCSEEEEEC-CCSHHHHHH---HHTTCCSCEE
T ss_pred             HcCCCCCcEEEEec-hh-hhcCHHHHHHHHHHHHHcCCCEEEecC-CCCHHHHHH---HHHhCCCCEE
Confidence            22 23456666543 33 334567888888888899999887654 345666644   4444568988

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=85.46  E-value=4.9  Score=37.91  Aligned_cols=110  Identities=14%  Similarity=0.202  Sum_probs=65.0

Q ss_pred             HHHHhhhhcCCCEEEEEecC--CCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 014691           40 VDMGKANASGADLVEIRLDG--LKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDV  117 (420)
Q Consensus        40 ~~~~~~~~~~~D~vElRlD~--l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDi  117 (420)
                      ..++.+...||++|.+--|-  |..  ..+.++.+++..++|+|.   .  +   |-.++.+    +..+...|+|.|=+
T Consensus        76 ~~A~~y~~~GA~~isvltd~~~f~G--s~~~l~~ir~~v~lPvl~---k--d---fiid~~q----v~~A~~~GAD~VlL  141 (272)
T 3qja_A           76 KLAQAYQDGGARIVSVVTEQRRFQG--SLDDLDAVRASVSIPVLR---K--D---FVVQPYQ----IHEARAHGADMLLL  141 (272)
T ss_dssp             HHHHHHHHTTCSEEEEECCGGGHHH--HHHHHHHHHHHCSSCEEE---E--S---CCCSHHH----HHHHHHTTCSEEEE
T ss_pred             HHHHHHHHcCCCEEEEecChhhcCC--CHHHHHHHHHhCCCCEEE---C--c---cccCHHH----HHHHHHcCCCEEEE
Confidence            33445566799999876552  211  124577777778999983   1  2   3344421    34556789999876


Q ss_pred             E-cccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 014691          118 E-LQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA  173 (420)
Q Consensus       118 E-l~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia  173 (420)
                      = -..+.+..+++. ..+.-+..++++.|+      .+|+    +++.+.|+|++.+-
T Consensus       142 i~a~l~~~~l~~l~~~a~~lGl~~lvev~t------~ee~----~~A~~~Gad~IGv~  189 (272)
T 3qja_A          142 IVAALEQSVLVSMLDRTESLGMTALVEVHT------EQEA----DRALKAGAKVIGVN  189 (272)
T ss_dssp             EGGGSCHHHHHHHHHHHHHTTCEEEEEESS------HHHH----HHHHHHTCSEEEEE
T ss_pred             ecccCCHHHHHHHHHHHHHCCCcEEEEcCC------HHHH----HHHHHCCCCEEEEC
Confidence            2 222222333333 223457888999884      2344    33446799998876

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=85.42  E-value=0.55  Score=43.65  Aligned_cols=35  Identities=29%  Similarity=0.461  Sum_probs=30.6

Q ss_pred             EEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       384 vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ++.=|+||.|++++..|++.|++|++++|+.++++
T Consensus        24 lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~   58 (266)
T 4egf_A           24 LITGATKGIGADIARAFAAAGARLVLSGRDVSELD   58 (266)
T ss_dssp             EETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             EEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            44448999999999999999999999999987764

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=85.39  E-value=9.5  Score=34.82  Aligned_cols=155  Identities=12%  Similarity=0.037  Sum_probs=88.2

Q ss_pred             CcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHH
Q 014691           23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVD  102 (420)
Q Consensus        23 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~  102 (420)
                      ++.+|+.+-..+.++.++.+++. ...+|++++=..+|..+.+ +.++.+++..+.++++-+-..      +. .+.-..
T Consensus        12 ~~~lilAlD~~~~~~a~~~v~~~-~~~v~~~Kvg~~lf~~~G~-~~v~~l~~~~g~~v~lD~Kl~------Di-pnTv~~   82 (228)
T 3m47_A           12 MNRLILAMDLMNRDDALRVTGEV-REYIDTVKIGYPLVLSEGM-DIIAEFRKRFGCRIIADFKVA------DI-PETNEK   82 (228)
T ss_dssp             GGGEEEECCCCSHHHHHHHHHTT-TTTCSEEEEEHHHHHHHCT-HHHHHHHHHHCCEEEEEEEEC------SC-HHHHHH
T ss_pred             CCCeEEEeCCCCHHHHHHHHHHc-CCcccEEEEcHHHHHhcCH-HHHHHHHhcCCCeEEEEEeec------cc-HhHHHH
Confidence            67899999999999999988764 2338999998877743332 346666543457788777642      22 222223


Q ss_pred             HHHHHHHhCCcEEEEEcccccchhHHHhh-cCCCCcEEEE--EcccCCCCCCHHHH-HHHHHHHHHcCCCEEEEEeecCC
Q 014691          103 VLRLAMELGADYIDVELQVAREFNDSIRG-KKPEKCKVIV--SSHNYQYTPSVEDL-SNLVARIQASGADIVKFATTALD  178 (420)
Q Consensus       103 ll~~~~~~~~d~iDiEl~~~~~~~~~l~~-~~~~~~kiI~--S~H~f~~tP~~~el-~~~~~~~~~~gaDivKia~~~~s  178 (420)
                      ..+.+++.|+|+|.+=.....+.++.... .+..+.+|++  |.-+-.......++ .+..+...+.|.|-  +++.++.
T Consensus        83 ~~~~~~~~gad~vtvh~~~G~~~l~~~~~~~~~~g~~v~vLt~~s~~~~~~~~~~~~~~~a~~a~~~G~~G--vV~~at~  160 (228)
T 3m47_A           83 ICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKN--YVGPSTR  160 (228)
T ss_dssp             HHHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEECCCCSGGGGTTHHHHHHHHHHHHHHTTCCE--EECCSSC
T ss_pred             HHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHHHHHHHHHHHHHHHhCCcE--EEECCCC
Confidence            44566778999999976655554444332 1112335543  32111000011122 33344455678765  4555555


Q ss_pred             HHHHHHHHHH
Q 014691          179 ITDVARVFQI  188 (420)
Q Consensus       179 ~~D~~~ll~~  188 (420)
                      ++++..+-+.
T Consensus       161 ~~e~~~ir~~  170 (228)
T 3m47_A          161 PERLSRLREI  170 (228)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHh
Confidence            6666554444

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=85.38  E-value=1.1  Score=42.76  Aligned_cols=86  Identities=15%  Similarity=0.184  Sum_probs=60.0

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCC---EEEEEecC--CC---CC--Cc---hhHHHHHHhhCCCcEEEEeccCCCCCC
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGAD---LVEIRLDG--LK---NF--NP---RENIKTLIKESPVPTLFTYRPIWEGGQ   92 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D---~vElRlD~--l~---~~--~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~   92 (420)
                      +.+.|.+.+.++..+-++.+.+.|+|   .||+-+-+  ..   .+  ++   .+.++.+++..++|+++-++..     
T Consensus        96 ~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~-----  170 (314)
T 2e6f_A           96 LFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPY-----  170 (314)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCC-----
T ss_pred             EEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEECCC-----
Confidence            55678899999999988888778899   99996531  00   00  11   1234445445589999887742     


Q ss_pred             CCCCHHHHHHHHHHHHHhC-CcEEEEE
Q 014691           93 YDGDENERVDVLRLAMELG-ADYIDVE  118 (420)
Q Consensus        93 ~~~~~~~~~~ll~~~~~~~-~d~iDiE  118 (420)
                        .+.++..++.+.+.+.| +|+|++-
T Consensus       171 --~~~~~~~~~a~~~~~aG~~d~i~v~  195 (314)
T 2e6f_A          171 --FDIAHFDTAAAVLNEFPLVKFVTCV  195 (314)
T ss_dssp             --CCHHHHHHHHHHHHTCTTEEEEEEC
T ss_pred             --CCHHHHHHHHHHHHhcCCceEEEEe
Confidence              25566677788888999 9999864

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=85.37  E-value=0.64  Score=48.59  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=29.8

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ..|+|||+|-+|.++++.|++.|.+|+|+.+.
T Consensus        33 ~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~   64 (571)
T 2rgh_A           33 LDLLIIGGGITGAGVAVQAAASGIKTGLIEMQ   64 (571)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            46999999999999999999999999999875

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=85.33  E-value=0.62  Score=50.72  Aligned_cols=34  Identities=32%  Similarity=0.420  Sum_probs=31.2

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ++++|+|||+|-+|.++++.|.+.|.+|+|+.+.
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~  368 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAK  368 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            4678999999999999999999999999999874

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=85.28  E-value=0.62  Score=47.30  Aligned_cols=33  Identities=27%  Similarity=0.337  Sum_probs=29.8

Q ss_pred             CEEEEEccchHHHHHHHHHHhC--CCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAK--GARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~--g~~i~v~nR~~  414 (420)
                      ++++|||+|.+|.+++..|.+.  |.+|+|+++..
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~   71 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGE   71 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCC
Confidence            5899999999999999999986  77999999864

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=85.26  E-value=0.86  Score=47.05  Aligned_cols=36  Identities=31%  Similarity=0.497  Sum_probs=32.1

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCC-eEEEEeCChh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTYE  415 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~-~i~v~nR~~~  415 (420)
                      .++++||.|+ ||.|++++..|.+.|+ +|++++|+..
T Consensus       258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~  295 (511)
T 2z5l_A          258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGP  295 (511)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence            4789999985 8899999999999999 7999999864

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=85.25  E-value=0.56  Score=45.45  Aligned_cols=37  Identities=32%  Similarity=0.374  Sum_probs=31.6

Q ss_pred             CEEEEE-ccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          382 KLFVVI-GAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       382 k~vlvi-GaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      +.++|. |+||+|.+++..+...|++|+++.|+.+|.+
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~  203 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIA  203 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            566666 7899999999999999999999999887754

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=85.18  E-value=0.67  Score=48.42  Aligned_cols=59  Identities=22%  Similarity=0.287  Sum_probs=42.0

Q ss_pred             CCeEEEEecCHHHHHH--HHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeC
Q 014691          344 DGKLFGYNTDYVGAIS--AIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       344 ~g~l~G~NTD~~G~~~--~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR  412 (420)
                      +|+.+|-.+|-.....  .|++.+..          .-...+++|||+|.+|.+++..|++.|.+|+|+.+
T Consensus        78 ~g~~igG~~~l~~~~~~g~L~~~l~~----------~~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~  138 (598)
T 2x8g_A           78 RGKFIGDSQTVLKYYSNDELAGIVNE----------SKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDY  138 (598)
T ss_dssp             TTEEEECHHHHHHHHHTTCHHHHHHC----------CSSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CCEEEEeeehhhhhhhcCcchhhccc----------ccccccEEEECCCccHHHHHHHHHhCCCeEEEEec
Confidence            6777776555434332  23333321          12346899999999999999999999999999986

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=85.18  E-value=0.5  Score=52.89  Aligned_cols=36  Identities=17%  Similarity=0.326  Sum_probs=32.1

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC------eEEEEeCC
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA------RVVIANRT  413 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~------~i~v~nR~  413 (420)
                      .+++.+|+|+|+||.|..++..|+..|+      +|+|++.+
T Consensus       422 kL~~~~VlvVGaGGlGsevlk~La~~Gv~~g~~G~i~lvD~D  463 (1015)
T 3cmm_A          422 KIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDND  463 (1015)
T ss_dssp             HHHTCEEEEECCSHHHHHHHHHHHHHTTTCSTTCEEEEECCC
T ss_pred             HHhcCeEEEEecCHHHHHHHHHHHHcCcCcCCCCeEEEEeCC
Confidence            3567899999999999999999999987      79999865

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=85.09  E-value=0.76  Score=47.11  Aligned_cols=38  Identities=13%  Similarity=0.199  Sum_probs=32.5

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhC--CCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAK--GARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~--g~~i~v~nR~~  414 (420)
                      ..++||+|+|||+|-.|--++..|++.  +++|+++-|+.
T Consensus       242 ~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~  281 (501)
T 4b63_A          242 DKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDS  281 (501)
T ss_dssp             CTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSS
T ss_pred             cccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence            357899999999999999999999764  45999999874

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=85.08  E-value=0.68  Score=49.07  Aligned_cols=39  Identities=13%  Similarity=0.083  Sum_probs=33.2

Q ss_pred             cCCCEEEEEcc-chHHHHHHHHHHhC-CCeEEEEeCChhhh
Q 014691          379 LAGKLFVVIGA-GGAGKALAYGAKAK-GARVVIANRTYENL  417 (420)
Q Consensus       379 ~~~k~vlviGa-GGaara~~~aL~~~-g~~i~v~nR~~~ka  417 (420)
                      ++++++||.|| |+.|++++..|.+. |.+|++++|+.++.
T Consensus       313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~  353 (660)
T 1z7e_A          313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAI  353 (660)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTT
T ss_pred             ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhh
Confidence            46789999996 77999999999998 78999999987654

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=85.01  E-value=0.8  Score=44.78  Aligned_cols=39  Identities=23%  Similarity=0.355  Sum_probs=32.6

Q ss_pred             CCCEEEEEc-cchHHHHHHHHHHh-CCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIG-AGGAGKALAYGAKA-KGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviG-aGGaara~~~aL~~-~g~~i~v~nR~~~ka~  418 (420)
                      .|++|||+| +|++|.+++..+.. .|++|+.+.++++|.+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~  211 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQE  211 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            578999999 89999999887776 4779999999887654

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=84.87  E-value=6.9  Score=37.64  Aligned_cols=87  Identities=16%  Similarity=0.152  Sum_probs=57.6

Q ss_pred             EEEEeecCCC-------HHHHHHHHHhhhhcCCCEEEEEecCCC-C----C-Cc---hhHHHHHHhhC---------CCc
Q 014691           25 LICVPIMGES-------VDKMVVDMGKANASGADLVEIRLDGLK-N----F-NP---RENIKTLIKES---------PVP   79 (420)
Q Consensus        25 ~icv~l~~~~-------~~e~~~~~~~~~~~~~D~vElRlD~l~-~----~-~~---~~~l~~l~~~~---------~~P   79 (420)
                      .+.+.|.+.+       .++...-++.+.. ++|.||+-+-+=. +    . ++   .+.++.+++..         +.|
T Consensus       135 ~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~-g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~P  213 (336)
T 1f76_A          135 VLGINIGKNKDTPVEQGKDDYLICMEKIYA-YAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVP  213 (336)
T ss_dssp             EEEEEECCCTTSCGGGTHHHHHHHHHHHGG-GCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             cEEEEecCCCCCcccccHHHHHHHHHHHhc-cCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCc
Confidence            5777887766       7777777766544 8999999764211 0    0 01   12344454443         789


Q ss_pred             EEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 014691           80 TLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVEL  119 (420)
Q Consensus        80 iI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl  119 (420)
                      +++-++..       .++++-.++.+.+.+.|+|+|++--
T Consensus       214 v~vKi~~~-------~~~~~~~~~a~~l~~~Gvd~i~vsn  246 (336)
T 1f76_A          214 IAVKIAPD-------LSEEELIQVADSLVRHNIDGVIATN  246 (336)
T ss_dssp             EEEECCSC-------CCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred             eEEEecCC-------CCHHHHHHHHHHHHHcCCcEEEEeC
Confidence            99877631       3556677888888999999999863

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=84.84  E-value=46  Score=35.71  Aligned_cols=212  Identities=15%  Similarity=0.086  Sum_probs=123.7

Q ss_pred             CHHHHHHHHHhhhhcCCCE--EEEE----ecC---CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADL--VEIR----LDG---LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDV  103 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~--vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~l  103 (420)
                      +.++.+.-++.+.+.|+|+  ||.=    .|.   |...++.+.++.+++.. +.++-.-.|...-=|..+..+....+.
T Consensus       123 ~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~R~~n~vgy~~~p~~~~~~~  202 (718)
T 3bg3_A          123 RTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKF  202 (718)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCCCCHHHHHHHHHHHcccchHHHHhcccccccccccCCcchHHH
Confidence            3455555555555566566  8872    331   33335666677776654 455555567543334445566666778


Q ss_pred             HHHHHHhCCcEEEEEccccc--chhHHHhhcCCCCcEEE--EEcc-cCCCC--C--CHHHHHHHHHHHHHcCCCEEEEEe
Q 014691          104 LRLAMELGADYIDVELQVAR--EFNDSIRGKKPEKCKVI--VSSH-NYQYT--P--SVEDLSNLVARIQASGADIVKFAT  174 (420)
Q Consensus       104 l~~~~~~~~d~iDiEl~~~~--~~~~~l~~~~~~~~kiI--~S~H-~f~~t--P--~~~el~~~~~~~~~~gaDivKia~  174 (420)
                      ++.+.+.|++.|-|=.....  .+...+...+..+..+.  +||- +|...  +  +.+.+.+..+++.+.|||++-|+=
T Consensus       203 i~~a~~~Gvd~irIf~s~n~l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~l~~~Ga~~I~l~D  282 (718)
T 3bg3_A          203 CEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKD  282 (718)
T ss_dssp             HHHHHHHTCCEEEEECSSCCHHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             HHHHHhcCcCEEEEEecHHHHHHHHHHHHHHHHcCCeEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence            89999999998877544322  11111112233344443  4533 12221  1  567899999999999999999986


Q ss_pred             ec--CCHHHHHHHHHHhcc-C-CCCEEEE--ecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691          175 TA--LDITDVARVFQITVH-S-QVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (420)
Q Consensus       175 ~~--~s~~D~~~ll~~~~~-~-~~p~I~~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~  246 (420)
                      |.  -++.++.++.+.+.. . +.|+-..  +.--++...=+.+-.-|....=+++..- .-..||++++++...++.
T Consensus       283 T~G~~~P~~v~~lV~~lk~~~p~~~I~~H~Hnd~GlAvANslaAveAGa~~VD~ti~Gl-GertGN~~lE~vv~~L~~  359 (718)
T 3bg3_A          283 MAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSM-SGMTSQPSMGALVACTRG  359 (718)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHSTTCCEEEECCCTTSCHHHHHHHHHHTTCSEEEEBCGGG-CSTTSCCBHHHHHHHHTT
T ss_pred             cCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCccHHHHHHHHHHHhCCCEEEecCccc-ccccCchhHHHHHHHHHh
Confidence            65  468898888877543 3 5665544  3444455555555555554444444431 235788877776655553

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=84.82  E-value=15  Score=35.38  Aligned_cols=149  Identities=15%  Similarity=0.141  Sum_probs=87.4

Q ss_pred             CCCcEEEEeecCCCHHHHHHHHHhhhhcCC-CEEEEEecCCCCCCch---hHHHHHHhhCCCcEEEEeccCCCCCCCCCC
Q 014691           21 KNPTLICVPIMGESVDKMVVDMGKANASGA-DLVEIRLDGLKNFNPR---ENIKTLIKESPVPTLFTYRPIWEGGQYDGD   96 (420)
Q Consensus        21 ~~~~~icv~l~~~~~~e~~~~~~~~~~~~~-D~vElRlD~l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~   96 (420)
                      -+.|.|+.|..+-+-.++...+.   ..|+ ++++.+.     .++.   +.++.+++..+.|+.+.+-..      .. 
T Consensus        11 ~~~Pii~apM~g~s~~~la~av~---~aG~lG~i~~~~-----~~~~~~~~~i~~i~~~~~~p~gvnl~~~------~~-   75 (332)
T 2z6i_A           11 IDYPIFQGGMAWVADGDLAGAVS---KAGGLGIIGGGN-----APKEVVKANIDKIKSLTDKPFGVNIMLL------SP-   75 (332)
T ss_dssp             CSSSEEECCCTTTCCHHHHHHHH---HHTSBEEEECTT-----CCHHHHHHHHHHHHHHCCSCEEEEECTT------ST-
T ss_pred             CCCCEEeCCCCCCCcHHHHHHHH---hCCCcEEeCCCC-----CCHHHHHHHHHHHHHhcCCCEEEEecCC------CC-
Confidence            46678888888766666655443   3464 7887642     1221   223344444567887665421      11 


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec
Q 014691           97 ENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA  176 (420)
Q Consensus        97 ~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~  176 (420)
                        .+-+.++.+.+.|+|.|.+-...+.++.+.+..   .+.+|+.+.+      +.+    ..+.+.+.|+|.+.+-...
T Consensus        76 --~~~~~~~~a~~~g~d~V~~~~g~p~~~i~~l~~---~g~~v~~~v~------~~~----~a~~~~~~GaD~i~v~g~~  140 (332)
T 2z6i_A           76 --FVEDIVDLVIEEGVKVVTTGAGNPSKYMERFHE---AGIIVIPVVP------SVA----LAKRMEKIGADAVIAEGME  140 (332)
T ss_dssp             --THHHHHHHHHHTTCSEEEECSSCGGGTHHHHHH---TTCEEEEEES------SHH----HHHHHHHTTCSCEEEECTT
T ss_pred             --CHHHHHHHHHHCCCCEEEECCCChHHHHHHHHH---cCCeEEEEeC------CHH----HHHHHHHcCCCEEEEECCC
Confidence              133566677888999998877777777777753   3688887753      222    2455667899999985321


Q ss_pred             -----CCHHHHHHHHHHhccCCCCEEEE
Q 014691          177 -----LDITDVARVFQITVHSQVPIIGL  199 (420)
Q Consensus       177 -----~s~~D~~~ll~~~~~~~~p~I~~  199 (420)
                           ....+...+-++....++|+|+-
T Consensus       141 ~GG~~g~~~~~~ll~~i~~~~~iPViaa  168 (332)
T 2z6i_A          141 AGGHIGKLTTMTLVRQVATAISIPVIAA  168 (332)
T ss_dssp             SSEECCSSCHHHHHHHHHHHCSSCEEEE
T ss_pred             CCCCCCCccHHHHHHHHHHhcCCCEEEE
Confidence                 11222222222333447898764

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=84.80  E-value=0.72  Score=47.48  Aligned_cols=37  Identities=35%  Similarity=0.340  Sum_probs=32.8

Q ss_pred             ccCC-CEEEEEccchHHHHHHHHHHhC------CCeEEEEeCCh
Q 014691          378 ALAG-KLFVVIGAGGAGKALAYGAKAK------GARVVIANRTY  414 (420)
Q Consensus       378 ~~~~-k~vlviGaGGaara~~~aL~~~------g~~i~v~nR~~  414 (420)
                      .++| |++.|||.|-+|.+.+..|.+.      |.+|++.+|+.
T Consensus        50 ~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~   93 (525)
T 3fr7_A           50 AFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKG   93 (525)
T ss_dssp             HTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTT
T ss_pred             HhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCc
Confidence            4678 9999999999999999999988      88888888764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=84.78  E-value=0.75  Score=47.39  Aligned_cols=32  Identities=28%  Similarity=0.373  Sum_probs=29.1

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeC
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR  412 (420)
                      ...++|||+|.+|.++++.|++.|.++.|+.+
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~  243 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE  243 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCeEEEEEC
Confidence            45799999999999999999999999988865

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=84.75  E-value=0.83  Score=46.27  Aligned_cols=37  Identities=14%  Similarity=0.223  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+.+|+|+|||+|-+|--++..|...|.+|+++.|..
T Consensus       194 ~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~  230 (464)
T 2xve_A          194 EFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRT  230 (464)
T ss_dssp             GGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSS
T ss_pred             HcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECC
Confidence            4578999999999999999999999999999998753

>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}

Probab=84.73  E-value=14  Score=36.22  Aligned_cols=157  Identities=11%  Similarity=0.160  Sum_probs=97.5

Q ss_pred             eecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCC-chhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHH
Q 014691           29 PIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFN-PRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRL  106 (420)
Q Consensus        29 ~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~-~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~  106 (420)
                      ++...+.+++.++++++...|.|.+++.+..  +.. +.+.++.+++.. +.|+.+-.    .|| |  +.++-.++++.
T Consensus       142 ~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~--~~~~~~e~v~avr~a~gd~~l~vD~----n~~-~--~~~~a~~~~~~  212 (384)
T 2pgw_A          142 FLQGETAEELARDAAVGHAQGERVFYLKVGR--GEKLDLEITAAVRGEIGDARLRLDA----NEG-W--SVHDAINMCRK  212 (384)
T ss_dssp             ECCCSSHHHHHHHHHHHHHTTCCEEEEECCS--CHHHHHHHHHHHHTTSTTCEEEEEC----TTC-C--CHHHHHHHHHH
T ss_pred             ECCCCCHHHHHHHHHHHHHcCCCEEEECcCC--CHHHHHHHHHHHHHHcCCcEEEEec----CCC-C--CHHHHHHHHHH
Confidence            3445789999999999888999999998753  111 123455565555 56665533    333 4  44566677787


Q ss_pred             HHHhCCcEEEEEcccccch---hHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec-CCHHHH
Q 014691          107 AMELGADYIDVELQVAREF---NDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA-LDITDV  182 (420)
Q Consensus       107 ~~~~~~d~iDiEl~~~~~~---~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~-~s~~D~  182 (420)
                      ..+++++||.  --.+.+.   .+.+..  .-++.|+..=..+    +.+++.+.++   .-.+|++=+-.+- -.....
T Consensus       213 l~~~~i~~iE--qP~~~~~~~~~~~l~~--~~~iPI~~de~i~----~~~~~~~~i~---~~~~d~v~ik~~~~GGit~~  281 (384)
T 2pgw_A          213 LEKYDIEFIE--QPTVSWSIPAMAHVRE--KVGIPIVADQAAF----TLYDVYEICR---QRAADMICIGPREIGGIQPM  281 (384)
T ss_dssp             HGGGCCSEEE--CCSCTTCHHHHHHHHH--HCSSCEEESTTCC----SHHHHHHHHH---TTCCSEEEECHHHHTSHHHH
T ss_pred             HHhcCCCEEe--CCCChhhHHHHHHHHh--hCCCCEEEeCCcC----CHHHHHHHHH---cCCCCEEEEcchhhCCHHHH
Confidence            7788999964  3333222   333332  2356777643222    2233333332   2358888774443 478888


Q ss_pred             HHHHHHhccCCCCEEEEecCCcc
Q 014691          183 ARVFQITVHSQVPIIGLVMGERG  205 (420)
Q Consensus       183 ~~ll~~~~~~~~p~I~~~MG~~G  205 (420)
                      .++..+....++++..-+|.+.+
T Consensus       282 ~~i~~~A~~~g~~~~~~~~~es~  304 (384)
T 2pgw_A          282 MKAAAVAEAAGLKICIHSSFTTG  304 (384)
T ss_dssp             HHHHHHHHHTTCCEEECCCSCCH
T ss_pred             HHHHHHHHHCCCeEeeccCcCCH
Confidence            88888888888998888887655

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=84.69  E-value=1.8  Score=43.59  Aligned_cols=52  Identities=15%  Similarity=0.102  Sum_probs=41.7

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHh-CCCeE-EEEeC
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA-KGARV-VIANR  412 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~-~g~~i-~v~nR  412 (420)
                      ++|.+.++++.+...       +.+++|++++|.|.|.+|+.++.-|.+ +|++| .|.++
T Consensus       189 g~Gv~~~~~~~~~~~-------g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~  242 (415)
T 2tmg_A          189 GRGVKVCAGLAMDVL-------GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDS  242 (415)
T ss_dssp             HHHHHHHHHHHHHHT-------TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             HHHHHHHHHHHHHHc-------CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeC
Confidence            577777777665431       357899999999999999999999998 99964 47776

>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}

Probab=84.67  E-value=29  Score=33.29  Aligned_cols=150  Identities=13%  Similarity=0.192  Sum_probs=89.8

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecC-CCC---CCc---hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691           33 ESVDKMVVDMGKANASGADLVEIRLDG-LKN---FNP---RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (420)
Q Consensus        33 ~~~~e~~~~~~~~~~~~~D~vElRlD~-l~~---~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (420)
                      -|.+|+.+++.++.+.||-++=+-+-- -+.   .++   .+.+..+++..+..|..|  +   ||....+.++|++.+.
T Consensus        29 vTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~iI~~T--T---gg~~~~~~eerla~~~  103 (311)
T 3e49_A           29 VTPDEVAQASIGAAEAGAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNTDAVINLT--T---GGSPHMTVEERLRPAT  103 (311)
T ss_dssp             CSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHCCCEEEEC--S---CSCTTSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCcEEEEC--C---CCCCCCCHHHHHHHHH
Confidence            367899999999999999999887754 221   122   234566666665444334  3   3433457788877664


Q ss_pred             HHHHhCCcEEEEEccccc-----------c----hhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 014691          106 LAMELGADYIDVELQVAR-----------E----FNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIV  170 (420)
Q Consensus       106 ~~~~~~~d~iDiEl~~~~-----------~----~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDiv  170 (420)
                      .   +.+|+.-+....-.           +    +-......  ....|      |..|  .+.+.+.++.|.+.|   +
T Consensus       104 ~---~~Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~--~~~~v------~~n~--~~~i~~~~~~~~e~G---i  167 (311)
T 3e49_A          104 H---YMPELASLNMGSMNFGLYPMLERFKEFAHGWEREHLER--SRDLV------FKNT--FADIEFILKTCGGNG---T  167 (311)
T ss_dssp             H---HCCSEEEEECSCEECCCGGGGGTCCCCSSHHHHHHHHG--GGGCE------ECCC--HHHHHHHHHHHHTTT---C
T ss_pred             h---cCCCeeeecCCCcccccccchhhccccccccchhhccc--CCCce------ecCC--HHHHHHHHHHHHHcC---C
Confidence            3   46898888754310           0    00000000  00111      2223  457888999999988   5


Q ss_pred             EEEeecCCHHHHHHHHHHhccC---CCCEEEEecCC
Q 014691          171 KFATTALDITDVARVFQITVHS---QVPIIGLVMGE  203 (420)
Q Consensus       171 Kia~~~~s~~D~~~ll~~~~~~---~~p~I~~~MG~  203 (420)
                      |.=...-+..++..+.++.+.-   ....+-+.||.
T Consensus       168 ~pE~e~fd~g~l~~~~~l~~~Gl~~~p~~~~~vlGv  203 (311)
T 3e49_A          168 RFEFECYDTSHLYNLAHFVDRKLATPPFFVQTVFGL  203 (311)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCSCSSEEEEEEESC
T ss_pred             eeEEEEECHHHHHHHHHHHHcCCCCCCeEEEEEecC
Confidence            7777777999988877776542   22355566663

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=84.65  E-value=5.3  Score=38.18  Aligned_cols=131  Identities=8%  Similarity=0.036  Sum_probs=68.8

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCC-HHHHHHHHHHHHHhC
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGD-ENERVDVLRLAMELG  111 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~-~~~~~~ll~~~~~~~  111 (420)
                      .++++...+... ..++|+|=+-.-         .++...+. .+.|+|+.+=....  .++.. ++.-..-.+.+++.|
T Consensus        71 gl~~~~~~i~~l-~~g~dav~~~~G---------~~~~~~~~~~~~~lil~l~~~t~--~~~~~~~~~l~~~ve~Av~~G  138 (295)
T 3glc_A           71 GLERIDINIAPL-FEHADVLMCTRG---------ILRSVVPPATNRPVVLRASGANS--ILAELSNEAVALSMDDAVRLN  138 (295)
T ss_dssp             TCTTHHHHTGGG-GGGCSEEEECHH---------HHHHHSCGGGCCCEEEECEECCC--TTSCTTCCEECSCHHHHHHTT
T ss_pred             chhhhHHHHHHh-hcCCCEEEECHh---------HHhhhccccCCccEEEEEcCCCc--CCCCCccchhHHHHHHHHHCC
Confidence            345554444443 246777754321         23333222 37899887653221  11111 111112356788999


Q ss_pred             CcEEEEEccccc----chhH---HHh-hcCCCCcEEEEEcccCCCCCCHHH-HHHHHHHHHHcCCCEEEEEeec
Q 014691          112 ADYIDVELQVAR----EFND---SIR-GKKPEKCKVIVSSHNYQYTPSVED-LSNLVARIQASGADIVKFATTA  176 (420)
Q Consensus       112 ~d~iDiEl~~~~----~~~~---~l~-~~~~~~~kiI~S~H~f~~tP~~~e-l~~~~~~~~~~gaDivKia~~~  176 (420)
                      +|.|++-++...    +.++   ++. ..++.+.++|+-++.-.......+ +....+.+.++|||++|.-.+.
T Consensus       139 AdaV~~~i~~Gs~~~~~~l~~i~~v~~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~~t~  212 (295)
T 3glc_A          139 SCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYYVE  212 (295)
T ss_dssp             CSEEEEEECTTSTTHHHHHHHHHHHHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEECCT
T ss_pred             CCEEEEEEECCCCcHHHHHHHHHHHHHHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeCCCH
Confidence            999999876533    1222   222 234567888885543111112234 3445666778999999998653

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=84.59  E-value=0.53  Score=47.17  Aligned_cols=32  Identities=19%  Similarity=0.281  Sum_probs=29.9

Q ss_pred             EEEEEccchHHHHHHHHHHhCC-----CeEEEEeCCh
Q 014691          383 LFVVIGAGGAGKALAYGAKAKG-----ARVVIANRTY  414 (420)
Q Consensus       383 ~vlviGaGGaara~~~aL~~~g-----~~i~v~nR~~  414 (420)
                      .|+|||+|.+|.+++..|.+.|     .+|+|+.+..
T Consensus        32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~   68 (463)
T 3s5w_A           32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQG   68 (463)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCS
T ss_pred             CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCC
Confidence            6999999999999999999999     8999999875

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=84.54  E-value=13  Score=35.41  Aligned_cols=120  Identities=18%  Similarity=0.310  Sum_probs=71.8

Q ss_pred             HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccc---------------cchhHHHh--
Q 014691           68 NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVA---------------REFNDSIR--  130 (420)
Q Consensus        68 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~---------------~~~~~~l~--  130 (420)
                      .++.+.+..++|+|+-..+    | | ++.+.-.+..+...+.|+..|-||-...               ++...+|.  
T Consensus        74 ~~~~I~r~~~~PviaD~d~----G-y-g~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa  147 (298)
T 3eoo_A           74 DANRITNATNLPLLVDIDT----G-W-GGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAA  147 (298)
T ss_dssp             HHHHHHHHCCSCEEEECTT----C-S-SSHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCeEEEECCC----C-C-CCHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHH
Confidence            3455656678999988775    3 3 3555556667788889999999998653               22344443  


Q ss_pred             -hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEE
Q 014691          131 -GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPII  197 (420)
Q Consensus       131 -~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I  197 (420)
                       .++.+.--+|.-.-|-......+|.+++.+...+.|||.+=+ -...|.++..++.+.+   +.|+.
T Consensus       148 ~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~AGAD~if~-~~~~~~ee~~~~~~~~---~~Pl~  211 (298)
T 3eoo_A          148 VDARTDETFVIMARTDAAAAEGIDAAIERAIAYVEAGADMIFP-EAMKTLDDYRRFKEAV---KVPIL  211 (298)
T ss_dssp             HHHCSSTTSEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEE-CCCCSHHHHHHHHHHH---CSCBE
T ss_pred             HHhccCCCeEEEEeehhhhhcCHHHHHHHHHhhHhcCCCEEEe-CCCCCHHHHHHHHHHc---CCCeE
Confidence             222222234444443211122455556666666789998844 3346788887766654   36654

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=84.53  E-value=0.63  Score=45.35  Aligned_cols=32  Identities=25%  Similarity=0.442  Sum_probs=29.4

Q ss_pred             EEEEEccchHHHHHHHHHHhC--CCeEEEEeCCh
Q 014691          383 LFVVIGAGGAGKALAYGAKAK--GARVVIANRTY  414 (420)
Q Consensus       383 ~vlviGaGGaara~~~aL~~~--g~~i~v~nR~~  414 (420)
                      .|+|||+|.+|.++++.|++.  |.+|.|+.+..
T Consensus        67 dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~  100 (326)
T 2gjc_A           67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV  100 (326)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEecCc
Confidence            699999999999999999988  88999999864

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=84.51  E-value=0.8  Score=46.95  Aligned_cols=36  Identities=25%  Similarity=0.425  Sum_probs=32.1

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCC-eEEEEeCChh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTYE  415 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~-~i~v~nR~~~  415 (420)
                      .++++||.|+ ||.|++++..|.+.|+ +|++++|+..
T Consensus       225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~  262 (486)
T 2fr1_A          225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGP  262 (486)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            4789999985 8899999999999999 6999999865

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=84.50  E-value=1.3  Score=45.10  Aligned_cols=37  Identities=22%  Similarity=0.295  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCC---eEEEEeCC
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGA---RVVIANRT  413 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~---~i~v~nR~  413 (420)
                      ..+++.++++.|||-+|-+++.-|...|+   +|++++|.
T Consensus       215 k~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~  254 (487)
T 3nv9_A          215 KDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSK  254 (487)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETT
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEecc
Confidence            45777899999999999999999999998   79999974

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=84.47  E-value=5  Score=37.08  Aligned_cols=104  Identities=14%  Similarity=0.184  Sum_probs=66.7

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEe-cC--CCCCCc-hhHHHHHHhhC--CCcEEEEeccCCCCCCCCCCHH
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRL-DG--LKNFNP-RENIKTLIKES--PVPTLFTYRPIWEGGQYDGDEN   98 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRl-D~--l~~~~~-~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~   98 (420)
                      +|+.+|..-|..++.++++.+.+.|+|++++++ |-  .+++.- .+.++.+++.+  +.++++.            +++
T Consensus        15 ~i~psila~D~~~l~~~i~~~~~~gad~lhvDvmDG~fvpn~t~G~~~v~~lr~~~~~DvhLMv~------------~p~   82 (237)
T 3cu2_A           15 KLSVGILSANWLQLNEEVTTLLENQINVLHFDIADGQFSSLFTVGAIGIKYFPTHCFKDVHLMVR------------NQL   82 (237)
T ss_dssp             CEEEEGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCTHHHHTSCTTSEEEEEEECS------------CHH
T ss_pred             eEEEeeeeCCcccHHHHHHHHHHcCCCEEEEEEecCccccchhhhHHHHHHHhhhCCCCeEEEEE------------CHH
Confidence            599999999999999999998888999999998 51  222221 13455554433  2222211            223


Q ss_pred             HHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCC---------CcEEEEEc
Q 014691           99 ERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPE---------KCKVIVSS  143 (420)
Q Consensus        99 ~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~---------~~kiI~S~  143 (420)
                      .   +++.+++.|+|+|-+=....+...+.+...+..         +.++.++.
T Consensus        83 ~---~i~~~~~aGAd~itvH~ea~~~~~~~i~~i~~~~~~~~~~~~g~~~gv~l  133 (237)
T 3cu2_A           83 E---VAKAVVANGANLVTLQLEQYHDFALTIEWLAKQKTTYANQVYPVLIGACL  133 (237)
T ss_dssp             H---HHHHHHHTTCSEEEEETTCTTSHHHHHHHHTTCEEEETTEEEECEEEEEE
T ss_pred             H---HHHHHHHcCCCEEEEecCCcccHHHHHHHHHhcccccccccCCceEEEEE
Confidence            3   455667789999888766554433333333455         67888887

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=84.24  E-value=0.61  Score=47.49  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=30.8

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCC---CeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKG---ARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g---~~i~v~nR~~  414 (420)
                      .++++|||+|.+|.+++..|.+.|   .+|+|++++.
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~   71 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNS   71 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCC
Confidence            368999999999999999999988   7999999864

>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8

Probab=84.17  E-value=13  Score=35.17  Aligned_cols=147  Identities=15%  Similarity=0.177  Sum_probs=82.7

Q ss_pred             hhcCCCEEEEEecCCC-------CCC---c---hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH-hC
Q 014691           46 NASGADLVEIRLDGLK-------NFN---P---RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAME-LG  111 (420)
Q Consensus        46 ~~~~~D~vElRlD~l~-------~~~---~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~-~~  111 (420)
                      .+.|+|++ +==|.+.       +..   -   ....+.+.+..+.|+|+ .-..  -|.+..+.++-++--.+.++ .|
T Consensus        51 e~aG~d~i-lvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vv-aD~p--fgsy~~s~~~a~~na~rl~~eaG  126 (281)
T 1oy0_A           51 DEAGIPVL-LVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVV-ADLP--FGSYEAGPTAALAAATRFLKDGG  126 (281)
T ss_dssp             HTTTCCEE-EECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEE-EECC--TTSSTTCHHHHHHHHHHHHHTTC
T ss_pred             HHcCCCEE-EECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEE-EECC--CCcccCCHHHHHHHHHHHHHHhC
Confidence            35689999 6556532       111   1   12455666777888887 5542  23444455554443344444 89


Q ss_pred             CcEEEEEccc-ccchhHHHhhcCCCCcEEEE-------Eccc---C---CCCCCHHHHHHHHHHHHHcCCCEEEEEeecC
Q 014691          112 ADYIDVELQV-AREFNDSIRGKKPEKCKVIV-------SSHN---Y---QYTPSVEDLSNLVARIQASGADIVKFATTAL  177 (420)
Q Consensus       112 ~d~iDiEl~~-~~~~~~~l~~~~~~~~kiI~-------S~H~---f---~~tP~~~el~~~~~~~~~~gaDivKia~~~~  177 (420)
                      ++.|-||-.. ..+.++.+..   .++.|+.       |.|.   |   -.|...+++.+......+.|||.+=+=..+ 
T Consensus       127 a~aVklEdg~e~~~~I~al~~---agIpV~gHiGLtPqsv~~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~vp-  202 (281)
T 1oy0_A          127 AHAVKLEGGERVAEQIACLTA---AGIPVMAHIGFTPQSVNTLGGFRVQGRGDAAEQTIADAIAVAEAGAFAVVMEMVP-  202 (281)
T ss_dssp             CSEEEEEBSGGGHHHHHHHHH---HTCCEEEEEECCC--------------CHHHHHHHHHHHHHHHHTCSEEEEESCC-
T ss_pred             CeEEEECCcHHHHHHHHHHHH---CCCCEEeeecCCcceecccCCeEEEeCcHHHHHHHHHHHHHHHcCCcEEEEecCC-
Confidence            9999999862 2233344432   3555552       1121   1   112123556666777778999988776654 


Q ss_pred             CHHHHHHHHHHhccCCCCEEEEecCCc
Q 014691          178 DITDVARVFQITVHSQVPIIGLVMGER  204 (420)
Q Consensus       178 s~~D~~~ll~~~~~~~~p~I~~~MG~~  204 (420)
                        +++.  -+++...++|+|.|+-|+.
T Consensus       203 --~~~a--~~it~~l~iP~igIGaG~~  225 (281)
T 1oy0_A          203 --AELA--TQITGKLTIPTVGIGAGPN  225 (281)
T ss_dssp             --HHHH--HHHHHHCSSCEEEESSCSC
T ss_pred             --HHHH--HHHHHhCCCCEEEeCCCCC
Confidence              2332  2445556799999988864

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=83.86  E-value=30  Score=32.86  Aligned_cols=87  Identities=15%  Similarity=0.188  Sum_probs=59.6

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCC---------C-C--Cc---hhHHHHHHhhCCCcEEEEeccCCC
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLK---------N-F--NP---RENIKTLIKESPVPTLFTYRPIWE   89 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~---------~-~--~~---~~~l~~l~~~~~~PiI~T~R~~~e   89 (420)
                      .+.+-|.+.+.+++.+-++.+.+. +|.||+-.++=.         . +  ++   .+.++.+++..+.|+.+-+|.   
T Consensus        60 ~~~~QL~g~~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~---  135 (318)
T 1vhn_A           60 NVAVQIFGSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRL---  135 (318)
T ss_dssp             TEEEEEECSCHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEES---
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecC---
Confidence            456778899999999888888777 999999886421         0 0  11   123445555567898888885   


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 014691           90 GGQYDGDENERVDVLRLAMELGADYIDVEL  119 (420)
Q Consensus        90 GG~~~~~~~~~~~ll~~~~~~~~d~iDiEl  119 (420)
                       |. ...+  -.++.+.+.+.|+|+|.|.-
T Consensus       136 -G~-~~~~--~~~~a~~l~~~G~d~i~v~g  161 (318)
T 1vhn_A          136 -GW-EKNE--VEEIYRILVEEGVDEVFIHT  161 (318)
T ss_dssp             -CS-SSCC--HHHHHHHHHHTTCCEEEEES
T ss_pred             -CC-ChHH--HHHHHHHHHHhCCCEEEEcC
Confidence             32 2222  22777888889999999953

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=83.81  E-value=0.66  Score=49.57  Aligned_cols=31  Identities=16%  Similarity=0.356  Sum_probs=28.5

Q ss_pred             EEEEEccchHHHHHHHHHHhC------CCeEEEEeCC
Q 014691          383 LFVVIGAGGAGKALAYGAKAK------GARVVIANRT  413 (420)
Q Consensus       383 ~vlviGaGGaara~~~aL~~~------g~~i~v~nR~  413 (420)
                      .|+|||+|++|.++|+.|++.      |.+|.|+.+.
T Consensus        24 DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~   60 (662)
T 3gyx_A           24 DLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA   60 (662)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEec
Confidence            599999999999999999987      9999999874

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=83.81  E-value=0.76  Score=48.78  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=29.4

Q ss_pred             CEEEEEccchHHHHHHHHHH---h-CCCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAK---A-KGARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~---~-~g~~i~v~nR~~  414 (420)
                      ..|+|||+|.+|.++|..|+   + .|++|.|+.+..
T Consensus        23 ~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~   59 (643)
T 1jnr_A           23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   59 (643)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcC
Confidence            36999999999999999999   5 899999998764

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=83.79  E-value=1  Score=42.12  Aligned_cols=36  Identities=25%  Similarity=0.296  Sum_probs=32.4

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+++++|+|+|.+|--++..|...|.+|+++.|.+
T Consensus       142 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  177 (310)
T 1fl2_A          142 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP  177 (310)
T ss_dssp             GBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCc
Confidence            357899999999999999999999999999999864

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=83.68  E-value=0.88  Score=46.79  Aligned_cols=32  Identities=28%  Similarity=0.422  Sum_probs=29.9

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ..++|||+|.+|.+++..|+++|.+|.|+.+.
T Consensus        33 ~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~   64 (519)
T 3qfa_A           33 YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFV   64 (519)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            47999999999999999999999999999974

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=83.66  E-value=1.3  Score=45.58  Aligned_cols=34  Identities=29%  Similarity=0.446  Sum_probs=30.7

Q ss_pred             CCEEEEEcc-chHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691          381 GKLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGa-GGaara~~~aL~~~g~-~i~v~nR~~  414 (420)
                      ++++||.|+ ||.|++++..|.+.|+ +|.+++|+.
T Consensus       239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~  274 (496)
T 3mje_A          239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRG  274 (496)
T ss_dssp             CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSG
T ss_pred             CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCC
Confidence            489999985 8899999999999999 899999974

>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}

Probab=83.45  E-value=33  Score=32.97  Aligned_cols=213  Identities=12%  Similarity=0.093  Sum_probs=114.4

Q ss_pred             ccccCCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEE-eccCCCCCC
Q 014691           14 LVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFT-YRPIWEGGQ   92 (420)
Q Consensus        14 ~~~~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T-~R~~~eGG~   92 (420)
                      |..-.+++..-...++++..+--++..   .+.+.|.|.||.=.....+ .+.+.++.+++..+-+-+.. .|..     
T Consensus         9 I~DttlRDG~Q~~~~~~~~~~Kl~ia~---~L~~~Gv~~IE~g~p~~~~-~d~e~v~~i~~~~~~~~i~~l~r~~-----   79 (325)
T 3eeg_A            9 VFDTTLRDGEQVPGCQLNTEEKIIVAK---ALDELGVDVIEAGFPVSSP-GDFNSVVEITKAVTRPTICALTRAK-----   79 (325)
T ss_dssp             EEECGGGCC-------CCTTHHHHHHH---HHHHHTCSEEEEECTTSCH-HHHHHHHHHHHHCCSSEEEEECCSC-----
T ss_pred             EEECCCCCcccCCCCCCCHHHHHHHHH---HHHHcCCCEEEEeCCCCCH-hHHHHHHHHHHhCCCCEEEEeecCC-----
Confidence            333334444433444554444444444   4445699999996432211 12334555655443333333 4532     


Q ss_pred             CCCCHHHHHHHHHHHHHh----CCcEEEEEcccccc---------------hhHH-HhhcCCCCcEEEEEcccCCCCCCH
Q 014691           93 YDGDENERVDVLRLAMEL----GADYIDVELQVARE---------------FNDS-IRGKKPEKCKVIVSSHNYQYTPSV  152 (420)
Q Consensus        93 ~~~~~~~~~~ll~~~~~~----~~d~iDiEl~~~~~---------------~~~~-l~~~~~~~~kiI~S~H~f~~tP~~  152 (420)
                          .    +-++++++.    |++.|.+=...++-               .+.+ +...+..+..+..+.=+...+ +.
T Consensus        80 ----~----~~i~~a~~al~~ag~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~~d~~~~-~~  150 (325)
T 3eeg_A           80 ----E----ADINIAGEALRFAKRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVEFFCEDAGRA-DQ  150 (325)
T ss_dssp             ----H----HHHHHHHHHHTTCSSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEEEEEETGGGS-CH
T ss_pred             ----H----HHHHHHHHhhcccCCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEccccccc-hH
Confidence                1    123444555    88888874433221               1112 222345677777766544333 46


Q ss_pred             HHHHHHHHHHHHcCCCEEEEEeec--CCHHHHHHHHHHhccC-C----CCEEEEe--cCCcchhhhhhccccCCcccccc
Q 014691          153 EDLSNLVARIQASGADIVKFATTA--LDITDVARVFQITVHS-Q----VPIIGLV--MGERGLISRILCAKFGGFLTFGT  223 (420)
Q Consensus       153 ~el~~~~~~~~~~gaDivKia~~~--~s~~D~~~ll~~~~~~-~----~p~I~~~--MG~~G~~SRi~~~~~Gs~ltf~~  223 (420)
                      +.+.+..+++.+.|||.+-|+=+.  -++.++.++++.+... +    .|+-.-+  .--++...=+.+-..|....=++
T Consensus       151 ~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~vd~t  230 (325)
T 3eeg_A          151 AFLARMVEAVIEAGADVVNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQVECT  230 (325)
T ss_dssp             HHHHHHHHHHHHHTCSEEECCBSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHHHHTCCEEEEB
T ss_pred             HHHHHHHHHHHhcCCCEEEecCccCCcCHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            778999999999999998888655  5788998888765542 2    4544333  33334444444444454433344


Q ss_pred             cCCCccCCCCCCCHHhHHHHHh
Q 014691          224 LENGIVSAPGQPTIKDLLDLYN  245 (420)
Q Consensus       224 ~~~~~~sAPGQ~~~~~l~~~~~  245 (420)
                      +..- .-+.|+++++++.-.++
T Consensus       231 v~Gl-Ger~GN~~lE~vv~~L~  251 (325)
T 3eeg_A          231 INGI-GERAGNTALEEVVMAME  251 (325)
T ss_dssp             GGGC-CSTTCCCBHHHHHHHHH
T ss_pred             cccc-cccccchhHHHHHHHHH
Confidence            4331 24689999999877765

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=83.35  E-value=1.5  Score=42.85  Aligned_cols=38  Identities=11%  Similarity=0.052  Sum_probs=30.3

Q ss_pred             cCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       379 ~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      -.|++|||+|+ |++|.+++..+...|++|+.+. +.+|.
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~  201 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNF  201 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGH
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHH
Confidence            35789999999 8899999999999999766554 44443

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=83.30  E-value=0.74  Score=48.06  Aligned_cols=34  Identities=38%  Similarity=0.598  Sum_probs=30.7

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ...|+|||+|.+|.++++.|.+.|.+|+|+.+..
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~  159 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP  159 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            3579999999999999999999999999998764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=83.23  E-value=1.2  Score=41.58  Aligned_cols=36  Identities=19%  Similarity=0.172  Sum_probs=32.4

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+++++|+|+|-.|--++..|.+.|.+|+++.|..
T Consensus       141 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  176 (311)
T 2q0l_A          141 YKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRD  176 (311)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCC
Confidence            357899999999999999999999999999998864

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=83.21  E-value=1.6  Score=44.37  Aligned_cols=52  Identities=21%  Similarity=0.301  Sum_probs=41.7

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCe-EEEEeC
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANR  412 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~-i~v~nR  412 (420)
                      ++|.+.++++.+...       +.+++|++|+|.|.|.+|..++.-|.++|++ |.|.+.
T Consensus       210 g~Gv~~~~~~~~~~~-------G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVavsD~  262 (449)
T 1bgv_A          210 GYGSVYYVEAVMKHE-------NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGP  262 (449)
T ss_dssp             HHHHHHHHHHHHHHT-------TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEET
T ss_pred             hHHHHHHHHHHHHHc-------cCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEeC
Confidence            677777777766432       3578999999999999999999999999995 546774

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=83.18  E-value=0.62  Score=46.05  Aligned_cols=34  Identities=24%  Similarity=0.158  Sum_probs=31.2

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      +++++|||+|-+|--++..|.+.|.+|+++.|..
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~  179 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILE  179 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence            5789999999999999999999999999998764

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=83.17  E-value=0.74  Score=53.31  Aligned_cols=41  Identities=27%  Similarity=0.465  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEcc-ch-HHHHHHHHHHhCCCeEEEE-eCChhhh
Q 014691          377 SALAGKLFVVIGA-GG-AGKALAYGAKAKGARVVIA-NRTYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGa-GG-aara~~~aL~~~g~~i~v~-nR~~~ka  417 (420)
                      ..++||.+||.|+ || .|++++..|++.|++|+++ .|+.+++
T Consensus       472 msL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~l  515 (1688)
T 2pff_A          472 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQV  515 (1688)
T ss_dssp             CCCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTT
T ss_pred             cccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHH
Confidence            4578999999997 45 9999999999999988887 6776544

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=83.13  E-value=0.91  Score=47.89  Aligned_cols=36  Identities=33%  Similarity=0.468  Sum_probs=32.0

Q ss_pred             ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCC
Q 014691          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      .++||.++|-|+ +|.|++++..|++.|++|++.+|.
T Consensus       319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~  355 (604)
T 2et6_A          319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFK  355 (604)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCc
Confidence            578999999986 689999999999999999998863

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=83.12  E-value=1.3  Score=43.84  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=32.1

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+++++|||+|-+|--++..|.+.|.+|+++.|..
T Consensus       144 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  178 (408)
T 2gqw_A          144 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP  178 (408)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCC
Confidence            37899999999999999999999999999999864

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=82.91  E-value=0.9  Score=47.18  Aligned_cols=38  Identities=24%  Similarity=0.281  Sum_probs=35.6

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      ++++|+|.|..|+.++..|.+.|.++.++++++++.++
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~  386 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCN  386 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhh
Confidence            78999999999999999999999999999999988765

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=82.90  E-value=8.8  Score=37.32  Aligned_cols=88  Identities=17%  Similarity=0.289  Sum_probs=53.9

Q ss_pred             eecCCCHHHHHHH----HHhhhhcCCCEEEEEecC--C-----CC---CC---------c-----hhHHHHHHhhC--CC
Q 014691           29 PIMGESVDKMVVD----MGKANASGADLVEIRLDG--L-----KN---FN---------P-----RENIKTLIKES--PV   78 (420)
Q Consensus        29 ~l~~~~~~e~~~~----~~~~~~~~~D~vElRlD~--l-----~~---~~---------~-----~~~l~~l~~~~--~~   78 (420)
                      .++..++++++++    ++++.+.|.|.||+..-+  |     .+   ..         .     .+.++.+++..  +.
T Consensus       141 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~  220 (349)
T 3hgj_A          141 PLDEAGMERILQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPREL  220 (349)
T ss_dssp             ECCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCc
Confidence            3555555555444    334556899999999854  1     11   10         0     12334444544  67


Q ss_pred             cEEEEeccC--CCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 014691           79 PTLFTYRPI--WEGGQYDGDENERVDVLRLAMELGADYIDVEL  119 (420)
Q Consensus        79 PiI~T~R~~--~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl  119 (420)
                      ||.+-++..  .+||.   +.++..++.+.+.+.|+|||++-.
T Consensus       221 pV~vRls~~~~~~~g~---~~~~~~~la~~L~~~Gvd~i~vs~  260 (349)
T 3hgj_A          221 PLFVRVSATDWGEGGW---SLEDTLAFARRLKELGVDLLDCSS  260 (349)
T ss_dssp             CEEEEEESCCCSTTSC---CHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             eEEEEeccccccCCCC---CHHHHHHHHHHHHHcCCCEEEEec
Confidence            887766643  23442   456778888888899999999864

>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*

Probab=82.89  E-value=8.7  Score=35.45  Aligned_cols=47  Identities=13%  Similarity=0.188  Sum_probs=31.5

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc--hhHHHHHHhhCCCcEEE
Q 014691           33 ESVDKMVVDMGKANASGADLVEIRLDGLKNFNP--RENIKTLIKESPVPTLF   82 (420)
Q Consensus        33 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~--~~~l~~l~~~~~~PiI~   82 (420)
                      .++++.++.+.   +.|.|.||++.+.+...++  .+.++.+++...+.+..
T Consensus        17 ~~~~~~l~~~~---~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~i~~   65 (294)
T 3vni_A           17 ADYKYYIEKVA---KLGFDILEIAASPLPFYSDIQINELKACAHGNGITLTV   65 (294)
T ss_dssp             CCHHHHHHHHH---HHTCSEEEEESTTGGGCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCHHHHHHHHH---HcCCCEEEecCcccCCcCHHHHHHHHHHHHHcCCeEEE
Confidence            35677776554   5699999999876544332  24566666777887765

>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*

Probab=82.75  E-value=22  Score=34.16  Aligned_cols=114  Identities=17%  Similarity=0.111  Sum_probs=72.6

Q ss_pred             HHHHHHHhhhhcCCCEEEEEecCCCC----CCchh---HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH
Q 014691           37 KMVVDMGKANASGADLVEIRLDGLKN----FNPRE---NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAME  109 (420)
Q Consensus        37 e~~~~~~~~~~~~~D~vElRlD~l~~----~~~~~---~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~  109 (420)
                      ++.+.+++..+.|||+|-+....-..    .++.+   .++.+.+..++|+.+- -        .+.++.+-+.++++++
T Consensus        75 ~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~~~vplsI~-D--------T~~~~~~~~V~eaal~  145 (310)
T 2h9a_B           75 DPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAEVCKAVADAIDVPLMII-G--------CGVEEKDAEIFPVIGE  145 (310)
T ss_dssp             CHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCSSCEEEE-C--------CSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHhCCceEEEE-C--------CCCCCCCHHHHHHHHH
Confidence            44555556678899999999975431    12222   2444555568898650 1        1356778899999999


Q ss_pred             hCCc---E-EEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCC
Q 014691          110 LGAD---Y-IDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGA  167 (420)
Q Consensus       110 ~~~d---~-iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~ga  167 (420)
                      .|++   . =|+.....++.....   .+.+..+|+. |.-    +.+.+.++++.+.++|.
T Consensus       146 aga~~k~iINdvs~~~~~~~~~~a---a~~g~~vv~m-~~~----dv~~l~~~~~~a~~~Gi  199 (310)
T 2h9a_B          146 ALSGRNCLLSSATKDNYKPIVATC---MVHGHSVVAS-APL----DINLSKQLNIMIMEMNL  199 (310)
T ss_dssp             HTTTSCCEEEEECTTTHHHHHHHH---HHHTCEEEEE-CSS----CHHHHHHHHHHHHTTTC
T ss_pred             hCCCCCCEEEECCCCccHHHHHHH---HHhCCCEEEE-Chh----HHHHHHHHHHHHHHCCC
Confidence            9987   4 478765444333322   2346777775 321    35678888888888885

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=82.71  E-value=1.3  Score=44.91  Aligned_cols=36  Identities=33%  Similarity=0.348  Sum_probs=32.4

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~  414 (420)
                      ..+|+|+|||+|-+|--++..+..+|+ +|+++.|..
T Consensus       262 ~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~  298 (456)
T 2vdc_G          262 AAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRD  298 (456)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCC
Confidence            468999999999999999999999999 799998864

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=82.66  E-value=7.7  Score=36.21  Aligned_cols=130  Identities=20%  Similarity=0.180  Sum_probs=69.9

Q ss_pred             CCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHH---hhCCCcEEEEeccCCCCCCCCC
Q 014691           19 MRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLI---KESPVPTLFTYRPIWEGGQYDG   95 (420)
Q Consensus        19 ~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~   95 (420)
                      ..=++|.|--+-.+++.++..+.+.   ..|+|+||+=+=+. +.. ...+..++   +..+.|++...     .|.+  
T Consensus         9 ~~~~~~~~~~t~g~p~~~~~~~~l~---~~Gad~ielg~pr~-~~~-g~~~~~~~~~l~~~~~~~~pn~-----~~~~--   76 (264)
T 1xm3_A            9 KSFQSRLLLGTGKYPSFDIQKEAVA---VSESDILTFAVRRM-NIF-EASQPNFLEQLDLSKYTLLPNT-----AGAS--   76 (264)
T ss_dssp             EEESCCEEEECSCSSCHHHHHHHHH---HHTCSEEEEETTSS-TTC--------CTTCCGGGSEEEEEC-----TTCS--
T ss_pred             EEecCCCEEEecCCCCHHHHHHHHH---HcCCeEEEEccccc-ccC-CCCHHHHHHHHHhcCCeEcCCc-----cccC--
Confidence            3446678888889999999886554   45999999965322 110 11223232   23345555432     1332  


Q ss_pred             CHHHHHHHHHHHHHhC-CcEEEEEcccc-----c---chhHHHhhcCCCCcEEE-EEcccCCCCCCHHHHHHHHHHHHHc
Q 014691           96 DENERVDVLRLAMELG-ADYIDVELQVA-----R---EFNDSIRGKKPEKCKVI-VSSHNYQYTPSVEDLSNLVARIQAS  165 (420)
Q Consensus        96 ~~~~~~~ll~~~~~~~-~d~iDiEl~~~-----~---~~~~~l~~~~~~~~kiI-~S~H~f~~tP~~~el~~~~~~~~~~  165 (420)
                      +.++.+.+.+.+.+.+ .++|-+|+--+     +   ++.+........+..++ ++.|      +.+    ..+++.+.
T Consensus        77 ~~~~~~~f~~~a~~agg~~~i~l~i~~d~~~~~~e~~~~~~~a~~~~~~g~~vi~~~~~------~~~----~a~~~~~~  146 (264)
T 1xm3_A           77 TAEEAVRIARLAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSD------DVV----LARKLEEL  146 (264)
T ss_dssp             SHHHHHHHHHHHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECS------CHH----HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCeEEEeecCCCcccccchHHHHHHHHHHHCCCeEEEEEcCC------CHH----HHHHHHHh
Confidence            4455556667776664 67877765321     2   12222211111256666 5654      222    35566678


Q ss_pred             CCCEE
Q 014691          166 GADIV  170 (420)
Q Consensus       166 gaDiv  170 (420)
                      |+|++
T Consensus       147 gad~v  151 (264)
T 1xm3_A          147 GVHAI  151 (264)
T ss_dssp             TCSCB
T ss_pred             CCCEE
Confidence            99998

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=82.63  E-value=3.1  Score=38.74  Aligned_cols=92  Identities=20%  Similarity=0.160  Sum_probs=0.0

Q ss_pred             HHHHHHhCCcEEEEEccccc-------chhHHHh-hcCCCCcEEEEEc-----ccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 014691          104 LRLAMELGADYIDVELQVAR-------EFNDSIR-GKKPEKCKVIVSS-----HNYQYTPSVEDLSNLVARIQASGADIV  170 (420)
Q Consensus       104 l~~~~~~~~d~iDiEl~~~~-------~~~~~l~-~~~~~~~kiI~S~-----H~f~~tP~~~el~~~~~~~~~~gaDiv  170 (420)
                      .+.+++.|++.||+.+....       +..+.+. ..+..+.++|+-.     |- +.--+.+++.+..+.+.+.|+|++
T Consensus       105 v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~~l-~~~~~~~~~~~~a~~a~~~Gad~i  183 (273)
T 2qjg_A          105 VEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHI-QNERDPELVAHAARLGAELGADIV  183 (273)
T ss_dssp             HHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEEEEECSTTC-SCTTCHHHHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCccc-CCCCCHhHHHHHHHHHHHcCCCEE


Q ss_pred             EEEeecCCHHHHHHHHHHhccCCCCEEEEe
Q 014691          171 KFATTALDITDVARVFQITVHSQVPIIGLV  200 (420)
Q Consensus       171 Kia~~~~s~~D~~~ll~~~~~~~~p~I~~~  200 (420)
                      |+-.    ..|...+.++....++|+++.+
T Consensus       184 ~~~~----~~~~~~l~~i~~~~~ipvva~G  209 (273)
T 2qjg_A          184 KTSY----TGDIDSFRDVVKGCPAPVVVAG  209 (273)
T ss_dssp             EECC----CSSHHHHHHHHHHCSSCEEEEC
T ss_pred             EECC----CCCHHHHHHHHHhCCCCEEEEe

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=82.62  E-value=0.87  Score=46.75  Aligned_cols=35  Identities=20%  Similarity=0.257  Sum_probs=30.5

Q ss_pred             CCCEEEEEccchHHHH-HHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKA-LAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara-~~~aL~~~g~~i~v~nR~~  414 (420)
                      +.|+++|||.||+|.+ ++..|.++|++|++.++..
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~   56 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP   56 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC
Confidence            3589999999999996 7888999999999999753

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=82.40  E-value=1.1  Score=47.38  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=30.2

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..|+|||+|.+|.++++.|.+.|.+|.|+.+..
T Consensus        47 ~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~   79 (623)
T 3pl8_A           47 YDVVIVGSGPIGCTYARELVGAGYKVAMFDIGE   79 (623)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCcEEEEeccC
Confidence            469999999999999999999999999998753

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=82.20  E-value=1.5  Score=43.89  Aligned_cols=35  Identities=26%  Similarity=0.242  Sum_probs=32.0

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+++++|||+|.+|-.++..|.+.|.+|+++.|..
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~  182 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD  182 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCc
Confidence            46899999999999999999999999999999864

>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*

Probab=82.19  E-value=14  Score=37.26  Aligned_cols=153  Identities=20%  Similarity=0.259  Sum_probs=88.6

Q ss_pred             CCcEEEEeecCCCHH-HHHHHHHhhh---------hcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCC
Q 014691           22 NPTLICVPIMGESVD-KMVVDMGKAN---------ASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGG   91 (420)
Q Consensus        22 ~~~~icv~l~~~~~~-e~~~~~~~~~---------~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG   91 (420)
                      |.|.|++-|...-.+ ++...++...         ..++|+|-+|...-+.-.-...++.+.+..++|+++--       
T Consensus        90 n~p~ia~~V~D~~~e~~~~~~~~~~~~~~~~rvg~~~~~D~ial~~~s~dpe~~~~vVk~V~e~~dvPL~IDS-------  162 (446)
T 4djd_C           90 HETAIAIQVSDNLSSEELKAKVEAINGLNFDRVGQHYTIQAIAIRHDADDPAAFKAAVASVAAATQLNLVLMA-------  162 (446)
T ss_dssp             SCCEEEEEEETTSCHHHHHHHHHHHTTCCEEETTEEECCCEEEEECCSSSTHHHHHHHHHHHTTCCSEEEEEC-------
T ss_pred             CCCeEEEEEeCCCChHHHHHHHHHHHHHHHHHHHHhccCcEEEEEeCCCCHHHHHHHHHHHHHhCCCCEEEec-------
Confidence            667899888876433 3333333321         24688888888743210001234444455789987651       


Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc----EEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcC
Q 014691           92 QYDGDENERVDVLRLAMELGAD----YIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASG  166 (420)
Q Consensus        92 ~~~~~~~~~~~ll~~~~~~~~d----~iDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~g  166 (420)
                         .+    -+.++++++.+.+    .--+.    ++-.+.+. .+.+.+..||+. |+     +.+.+.+..+.+.++|
T Consensus       163 ---~d----pevleaALea~a~~~plI~sat----~dn~e~m~~lAa~y~~pVi~~-~~-----dl~~lkelv~~a~~~G  225 (446)
T 4djd_C          163 ---DD----PDVLKEALAGVADRKPLLYAAT----GANYEAMTALAKENNCPLAVY-GN-----GLEELAELVDKIVALG  225 (446)
T ss_dssp             ---SC----HHHHHHHHGGGGGGCCEEEEEC----TTTHHHHHHHHHHTTCCEEEE-CS-----SHHHHHHHHHHHHHTT
T ss_pred             ---CC----HHHHHHHHHhhcCcCCeeEecc----hhhHHHHHHHHHHcCCcEEEE-ec-----cHHHHHHHHHHHHHCC
Confidence               12    2467777775533    22222    22222222 122457788876 43     6788999999999999


Q ss_pred             CCEEEEEeecCC------HHHHHHHHHH-h----ccCCCCEEEEe
Q 014691          167 ADIVKFATTALD------ITDVARVFQI-T----VHSQVPIIGLV  200 (420)
Q Consensus       167 aDivKia~~~~s------~~D~~~ll~~-~----~~~~~p~I~~~  200 (420)
                      -+  +|+.=|-.      .+++.++-++ +    .....|+|...
T Consensus       226 I~--~IvLDPG~~g~~~t~~~~~~iRr~AL~~~d~~LgyPvi~~~  268 (446)
T 4djd_C          226 HK--QLVLDPGARETSRAIADFTQIRRLAIKKRFRSFGYPIIALT  268 (446)
T ss_dssp             CC--CEEEECCCCSHHHHHHHHHHHHHHHHHSCCGGGCSCBEEEC
T ss_pred             CC--cEEECCCchhHHHHHHHHHHHHHHhhhccCcccCCCEEecc
Confidence            76  78877754      5666666333 1    12378988754

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=82.16  E-value=1  Score=42.63  Aligned_cols=37  Identities=19%  Similarity=0.378  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+.+++++|+|+|-.|--++..|.+.|.+|+++.|..
T Consensus       149 ~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~  185 (335)
T 2zbw_A          149 EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRP  185 (335)
T ss_dssp             GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSS
T ss_pred             hcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCC
Confidence            3468999999999999999999999999999999864

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=82.10  E-value=1.2  Score=42.15  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=32.5

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+++++|+|+|-+|--++..|.+.|.+|+++.|..
T Consensus       157 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~  192 (333)
T 1vdc_A          157 FRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  192 (333)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             cCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCC
Confidence            357899999999999999999999999999999874

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=82.06  E-value=0.97  Score=50.36  Aligned_cols=34  Identities=38%  Similarity=0.467  Sum_probs=31.0

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .++++|||+|.+|-+++..|.+.|.+|+|+++..
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~  161 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERA  161 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            3579999999999999999999999999999863

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=82.03  E-value=1.3  Score=44.12  Aligned_cols=33  Identities=21%  Similarity=0.323  Sum_probs=30.3

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEe
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIAN  411 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~n  411 (420)
                      ..+++++|+|+|..|+.++.++.++|+++.+++
T Consensus        22 m~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d   54 (403)
T 3k5i_A           22 WNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD   54 (403)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            357899999999999999999999999888888

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=82.01  E-value=8.8  Score=37.65  Aligned_cols=123  Identities=19%  Similarity=0.216  Sum_probs=70.6

Q ss_pred             CCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhH---HHHHHhhCCCcEEEEeccCCCCCCCCC
Q 014691           19 MRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN---IKTLIKESPVPTLFTYRPIWEGGQYDG   95 (420)
Q Consensus        19 ~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~---l~~l~~~~~~PiI~T~R~~~eGG~~~~   95 (420)
                      +.-+.|.+..|..+-+..++...+.  ..-|..++.      .+.++.+.   ++.+.+...+|+.+.+-..        
T Consensus        42 ~~l~~Pii~apM~~vt~~~lA~avA--~~GGlgii~------~~~s~e~~~~~I~~vk~~~~~pvga~ig~~--------  105 (361)
T 3khj_A           42 VSLKIPLISSAMDTVTEHLMAVGMA--RLGGIGIIH------KNMDMESQVNEVLKVKNSGGLRVGAAIGVN--------  105 (361)
T ss_dssp             CEESSSEEECSSTTTCSHHHHHHHH--HTTCEEEEC------SSSCHHHHHHHHHHHHHTTCCCCEEEECTT--------
T ss_pred             cccCCCEEeecCCCCCcHHHHHHHH--HcCCCeEEe------cCCCHHHHHHHHHHHHhccCceEEEEeCCC--------
Confidence            3446688888888777666655333  234666665      12233322   3333334567877766321        


Q ss_pred             CHHHHHHHHHHHHHhCCcEEEEEcccc--cc---hhHHHhhcCCCCcEEEE-EcccCCCCCCHHHHHHHHHHHHHcCCCE
Q 014691           96 DENERVDVLRLAMELGADYIDVELQVA--RE---FNDSIRGKKPEKCKVIV-SSHNYQYTPSVEDLSNLVARIQASGADI  169 (420)
Q Consensus        96 ~~~~~~~ll~~~~~~~~d~iDiEl~~~--~~---~~~~l~~~~~~~~kiI~-S~H~f~~tP~~~el~~~~~~~~~~gaDi  169 (420)
                      +    .+.++.+++.|+|+|.|+....  +.   .++.+...  -+.+||+ ..+    |  .    +..+++.+.|+|.
T Consensus       106 ~----~e~a~~l~eaGad~I~ld~a~G~~~~~~~~i~~i~~~--~~~~Vivg~v~----t--~----e~A~~l~~aGaD~  169 (361)
T 3khj_A          106 E----IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSK--MNIDVIVGNVV----T--E----EATKELIENGADG  169 (361)
T ss_dssp             C----HHHHHHHHHTTCSEEEECCSCCSBHHHHHHHHHHHHH--CCCEEEEEEEC----S--H----HHHHHHHHTTCSE
T ss_pred             H----HHHHHHHHHcCcCeEEEeCCCCCcHHHHHHHHHHHHh--cCCcEEEccCC----C--H----HHHHHHHHcCcCE
Confidence            1    3455567778999998765442  22   23333322  2678887 332    2  2    2346667889999


Q ss_pred             EEEE
Q 014691          170 VKFA  173 (420)
Q Consensus       170 vKia  173 (420)
                      +|+.
T Consensus       170 I~VG  173 (361)
T 3khj_A          170 IKVG  173 (361)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9984

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=81.89  E-value=5  Score=39.66  Aligned_cols=90  Identities=16%  Similarity=0.135  Sum_probs=51.5

Q ss_pred             ecCCCHHHHHHH----HHhhhhcCCCEEEEEec------------------CCCCC-Cc-----hhHHHHHHhhCC-CcE
Q 014691           30 IMGESVDKMVVD----MGKANASGADLVEIRLD------------------GLKNF-NP-----RENIKTLIKESP-VPT   80 (420)
Q Consensus        30 l~~~~~~e~~~~----~~~~~~~~~D~vElRlD------------------~l~~~-~~-----~~~l~~l~~~~~-~Pi   80 (420)
                      ++..++++++.+    ++++.+.|.|.||+-.-                  -+... +.     .+.++.+++... -|+
T Consensus       156 mt~~eI~~~i~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v  235 (377)
T 2r14_A          156 LETDEIPGIVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERV  235 (377)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcE
Confidence            555555554443    34455689999999653                  23211 01     122344444332 288


Q ss_pred             EEEeccCC-CCCCC-CCCHHHHHHHHHHHHHhCCcEEEEEc
Q 014691           81 LFTYRPIW-EGGQY-DGDENERVDVLRLAMELGADYIDVEL  119 (420)
Q Consensus        81 I~T~R~~~-eGG~~-~~~~~~~~~ll~~~~~~~~d~iDiEl  119 (420)
                      .+-++... ..|.. ..+.++..++.+.+.+.|+|||++-.
T Consensus       236 ~vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~  276 (377)
T 2r14_A          236 GIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNE  276 (377)
T ss_dssp             EEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             EEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence            77777532 11211 12346778888888899999999854

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=81.86  E-value=1.2  Score=42.29  Aligned_cols=36  Identities=19%  Similarity=0.168  Sum_probs=32.4

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+++++|+|+|..|--++..|.+.|.+|+++.|..
T Consensus       153 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~  188 (335)
T 2a87_A          153 FRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRD  188 (335)
T ss_dssp             GTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCC
Confidence            357899999999999999999999999999998864

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=81.83  E-value=1.1  Score=43.69  Aligned_cols=34  Identities=26%  Similarity=0.283  Sum_probs=31.3

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      +++++|+|+|.+|-.++..|.++|.+|+++.|..
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  176 (367)
T 1xhc_A          143 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA  176 (367)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            4799999999999999999999999999998864

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=81.73  E-value=1.6  Score=43.79  Aligned_cols=34  Identities=32%  Similarity=0.346  Sum_probs=31.5

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      +++++|||+|.+|-.++..|.++|.+|+++.|..
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  203 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG  203 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence            5899999999999999999999999999999864

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=81.63  E-value=1.1  Score=52.92  Aligned_cols=41  Identities=27%  Similarity=0.465  Sum_probs=34.8

Q ss_pred             cccCCCEEEEEcc-ch-HHHHHHHHHHhCCCeEEEE-eCChhhh
Q 014691          377 SALAGKLFVVIGA-GG-AGKALAYGAKAKGARVVIA-NRTYENL  417 (420)
Q Consensus       377 ~~~~~k~vlviGa-GG-aara~~~aL~~~g~~i~v~-nR~~~ka  417 (420)
                      ..++||.+||-|+ || .|++++..|++.|++|+++ .|+.+++
T Consensus       671 m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l  714 (1887)
T 2uv8_A          671 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQV  714 (1887)
T ss_dssp             BCCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHH
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHH
Confidence            4678999999997 45 9999999999999998888 6876654

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=81.63  E-value=5.5  Score=39.14  Aligned_cols=90  Identities=17%  Similarity=0.199  Sum_probs=51.3

Q ss_pred             ecCCCHHHHHHH----HHhhhhcCCCEEEEEec------------------CCCCC-Cc-----hhHHHHHHhhCC-CcE
Q 014691           30 IMGESVDKMVVD----MGKANASGADLVEIRLD------------------GLKNF-NP-----RENIKTLIKESP-VPT   80 (420)
Q Consensus        30 l~~~~~~e~~~~----~~~~~~~~~D~vElRlD------------------~l~~~-~~-----~~~l~~l~~~~~-~Pi   80 (420)
                      ++..+++++..+    ++++.+.|+|.||+-.-                  -+... +.     .+.++.+++... -||
T Consensus       151 mt~~eI~~~i~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v  230 (364)
T 1vyr_A          151 LELDEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRI  230 (364)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcE
Confidence            445555444443    34456789999999653                  22211 00     122445555442 277


Q ss_pred             EEEeccCC--CCC-CCCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 014691           81 LFTYRPIW--EGG-QYDGDENERVDVLRLAMELGADYIDVEL  119 (420)
Q Consensus        81 I~T~R~~~--eGG-~~~~~~~~~~~ll~~~~~~~~d~iDiEl  119 (420)
                      .+-++...  +|. ....+.++..++.+.+.+.|+|||++-.
T Consensus       231 ~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~  272 (364)
T 1vyr_A          231 GIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSE  272 (364)
T ss_dssp             EEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             EEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence            77666532  210 1122446678888888899999999854

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=81.60  E-value=1.3  Score=41.83  Aligned_cols=36  Identities=28%  Similarity=0.278  Sum_probs=32.4

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+++++|+|+|..|--++..|.+.|.+|+++.|..
T Consensus       150 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  185 (325)
T 2q7v_A          150 YKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRD  185 (325)
T ss_dssp             GTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCC
Confidence            457899999999999999999999999999999864

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=81.57  E-value=1.6  Score=44.39  Aligned_cols=35  Identities=34%  Similarity=0.358  Sum_probs=32.1

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+++++|||+|-+|--++..|.++|.+|+++.|..
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~  227 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVD  227 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEccc
Confidence            47899999999999999999999999999999864

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=81.56  E-value=1  Score=43.71  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=29.6

Q ss_pred             CC-CEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          380 AG-KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       380 ~~-k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      .| ++|||+|+ |++|.+++..+...|++++++.++.+
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~  203 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRP  203 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCT
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCcc
Confidence            47 89999998 99999999888889997666665543

>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides}

Probab=81.56  E-value=42  Score=32.90  Aligned_cols=174  Identities=7%  Similarity=0.011  Sum_probs=101.0

Q ss_pred             CCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEE---ecCCCCC-C-chhHHHHHHhhC--CCcEEEEeccCCCCCCC
Q 014691           21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIR---LDGLKNF-N-PRENIKTLIKES--PVPTLFTYRPIWEGGQY   93 (420)
Q Consensus        21 ~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElR---lD~l~~~-~-~~~~l~~l~~~~--~~PiI~T~R~~~eGG~~   93 (420)
                      +..|.-+..+...+.+++.++++++...|.+.+++.   +..  +. . +.+.++.+++..  +.|+.+-..    | .|
T Consensus       132 ~~vp~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~spvG~--~~~~~~~e~v~avr~a~G~d~~l~vDan----~-~~  204 (401)
T 2hzg_A          132 HGKRPYASLLFGDTPQETLERARAARRDGFAAVKFGWGPIGR--GTVAADADQIMAAREGLGPDGDLMVDVG----Q-IF  204 (401)
T ss_dssp             CCBEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEEESTTTTS--SCHHHHHHHHHHHHHHHCSSSEEEEECT----T-TT
T ss_pred             CceEeeEEcCCCCCHHHHHHHHHHHHHhCCCeEEEcCCCCCC--CHHHHHHHHHHHHHHHhCCCCeEEEECC----C-CC
Confidence            444544433335789999999999888999999997   421  11 1 123455555543  577776543    2 34


Q ss_pred             CCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhc-C-CCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEE
Q 014691           94 DGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGK-K-PEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVK  171 (420)
Q Consensus        94 ~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~-~-~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivK  171 (420)
                      ..+.++-.++++...+++++||  |--...+....+... + .-.+.|+.-=..+    +.+++.+.++   .-.+|++-
T Consensus       205 ~~~~~~a~~~~~~l~~~~i~~i--EqP~~~~d~~~~~~l~~~~~~iPI~~dE~~~----~~~~~~~~i~---~~~~d~v~  275 (401)
T 2hzg_A          205 GEDVEAAAARLPTLDAAGVLWL--EEPFDAGALAAHAALAGRGARVRIAGGEAAH----NFHMAQHLMD---YGRIGFIQ  275 (401)
T ss_dssp             TTCHHHHHTTHHHHHHTTCSEE--ECCSCTTCHHHHHHHHTTCCSSEEEECTTCS----SHHHHHHHHH---HSCCSEEE
T ss_pred             CCCHHHHHHHHHHHHhcCCCEE--ECCCCccCHHHHHHHHhhCCCCCEEecCCcC----CHHHHHHHHH---CCCCCEEE
Confidence            1133555667777777889996  443333333333221 2 2466776642221    2233333332   34588886


Q ss_pred             EEee-cCCHHHHHHHHHHhccCCCCEEEEecCCcchhhhhhc
Q 014691          172 FATT-ALDITDVARVFQITVHSQVPIIGLVMGERGLISRILC  212 (420)
Q Consensus       172 ia~~-~~s~~D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~  212 (420)
                      +=.+ .-+....+++.++....+++++ ..|++.+ +++..+
T Consensus       276 ik~~~~GGit~~~~i~~~A~~~g~~~~-~h~~es~-i~~~a~  315 (401)
T 2hzg_A          276 IDCGRIGGLGPAKRVADAAQARGITYV-NHTFTSH-LALSAS  315 (401)
T ss_dssp             ECHHHHTSHHHHHHHHHHHHHHTCEEE-ECCCSCH-HHHHHH
T ss_pred             eCcchhCCHHHHHHHHHHHHHcCCEEe-cCCCCcH-HHHHHH
Confidence            6433 3578888888888777788866 4477655 444443

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=81.54  E-value=1.1  Score=55.68  Aligned_cols=39  Identities=21%  Similarity=0.280  Sum_probs=35.1

Q ss_pred             ccCCCEEEEEcc-ch-HHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          378 ALAGKLFVVIGA-GG-AGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       378 ~~~~k~vlviGa-GG-aara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      .++||.+||-|+ +| .|++++..|++.|++|.+.+|+.++
T Consensus      2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~ 2173 (3089)
T 3zen_D         2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDD 2173 (3089)
T ss_dssp             CCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSH
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            488999999986 57 9999999999999999999998665

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=81.52  E-value=0.97  Score=45.26  Aligned_cols=37  Identities=11%  Similarity=0.138  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCe-EEEEeCCh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~-i~v~nR~~  414 (420)
                      .+++|+|+|||+|-+|--++..|...|.+ |+++.|..
T Consensus       209 ~~~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~  246 (447)
T 2gv8_A          209 LFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG  246 (447)
T ss_dssp             GGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             hcCCCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence            45789999999999999999999999997 99998864

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=81.48  E-value=1.3  Score=41.65  Aligned_cols=36  Identities=25%  Similarity=0.269  Sum_probs=32.8

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..+++++|+|+|..|.-++..|.+.|.+|+++.|..
T Consensus       171 ~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~  206 (338)
T 3itj_A          171 FRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKD  206 (338)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC
Confidence            468999999999999999999999999999999864

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=81.47  E-value=0.56  Score=45.27  Aligned_cols=37  Identities=11%  Similarity=0.083  Sum_probs=33.2

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .++++|+|.|..|+.++..|.+.|. ++++++++++.+
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~  151 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK  151 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh
Confidence            3589999999999999999999999 999999998765

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=81.46  E-value=1.2  Score=42.51  Aligned_cols=35  Identities=29%  Similarity=0.434  Sum_probs=29.7

Q ss_pred             CCCEEEEEc-cchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviG-aGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .|++|+|+| +|++|.+++..+...|++|+.+.++.
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~  187 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR  187 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccc
Confidence            578999997 89999999999999999877766543

>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*

Probab=81.36  E-value=40  Score=32.49  Aligned_cols=160  Identities=18%  Similarity=0.188  Sum_probs=97.9

Q ss_pred             CCcEEEEeecCCCH--------------HHHHHHHHhhh-hcCCCEEEEEecCCCCC----Cch---hHHHHHHhhCCCc
Q 014691           22 NPTLICVPIMGESV--------------DKMVVDMGKAN-ASGADLVEIRLDGLKNF----NPR---ENIKTLIKESPVP   79 (420)
Q Consensus        22 ~~~~icv~l~~~~~--------------~e~~~~~~~~~-~~~~D~vElRlD~l~~~----~~~---~~l~~l~~~~~~P   79 (420)
                      |.|.|++-|.....              +++.+.+++.. ..|||+|-++...-..-    +..   ..++.+.+..++|
T Consensus        52 n~p~iam~V~D~~pe~~~~v~~~~~~~~~~~~~~A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~~vP  131 (323)
T 4djd_D           52 NRPVIGMEVQDIVPDWPDVLKDPFTDVINEPGRWAQKCVAEYGADLIYLKLDGADPEGANHSVDQCVATVKEVLQAVGVP  131 (323)
T ss_dssp             SCCEEEEEEESSCCSCCHHHHGGGTTTTTCHHHHHHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCCSC
T ss_pred             CCCeEEEEEecCCccchhhHHHHHHHHHHhHHHHHHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHHHHHHHhhCCce
Confidence            66777776666433              34555555555 78999999998865421    221   2244455557899


Q ss_pred             EEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCc----EEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHH
Q 014691           80 TLFTYRPIWEGGQYDGDENERVDVLRLAMELGAD----YIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDL  155 (420)
Q Consensus        80 iI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d----~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el  155 (420)
                      +.+-       |.  +.+..+-+.++++++.+++    .-|+.....++... +.  .+.+..+|+. |.    .+.+.+
T Consensus       132 lsID-------g~--~~~T~~~eV~eaAleagag~~~lINsv~~~~~~~m~~-la--a~~g~~vVlm-h~----~d~~~~  194 (323)
T 4djd_D          132 LVVV-------GC--GDVEKDHEVLEAVAEAAAGENLLLGNAEQENYKSLTA-AC--MVHKHNIIAR-SP----LDINIC  194 (323)
T ss_dssp             EEEE-------CC--SCHHHHHHHHHHHHHHTTTSCCEEEEEBTTBCHHHHH-HH--HHHTCEEEEE-CS----SCHHHH
T ss_pred             EEEE-------CC--CCCCCCHHHHHHHHHhcCCCCCeEEECCcccHHHHHH-HH--HHhCCeEEEE-cc----chHHHH
Confidence            8764       22  3456678899999998854    33555543333333 22  2357788875 31    135667


Q ss_pred             HHHHHHHHHcCCCEEEEEee------cCCHHHHHHHHHHhc--------cCCCCEEE
Q 014691          156 SNLVARIQASGADIVKFATT------ALDITDVARVFQITV--------HSQVPIIG  198 (420)
Q Consensus       156 ~~~~~~~~~~gaDivKia~~------~~s~~D~~~ll~~~~--------~~~~p~I~  198 (420)
                      .++++.+.++|.+-=+|..=      ..+.++++.+++.++        ..+.|++.
T Consensus       195 ~~l~~~a~~~GI~~e~IIlDPg~g~fgk~~e~~l~~l~~ir~~al~~~~~lg~PvL~  251 (323)
T 4djd_D          195 KQLNILINEMNLPLDHIVIDPSIGGLGYGIEYSFSIMERIRLGALQGDKMLSMPVIC  251 (323)
T ss_dssp             HHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHHHHHHTCGGGCSCBEE
T ss_pred             HHHHHHHHHcCCCHHHEEEeCCCccccCCHHHHHHHHHHHHHHhhcccccCCCCEEE
Confidence            77788888888632345532      356788887776543        24778775

>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}

Probab=81.33  E-value=19  Score=33.08  Aligned_cols=39  Identities=26%  Similarity=0.258  Sum_probs=25.5

Q ss_pred             HHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcE
Q 014691           41 DMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT   80 (420)
Q Consensus        41 ~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~Pi   80 (420)
                      .++.+.+.|.|.||+..+...+ ...++++.+++...+.+
T Consensus        46 ~l~~~~~~G~~~vEl~~~~~~~-~~~~~~~~~l~~~gl~~   84 (290)
T 2zvr_A           46 GMELAKRVGYQAVEIAVRDPSI-VDWNEVKILSEELNLPI   84 (290)
T ss_dssp             HHHHHHHHTCSEEEEECSCGGG-SCHHHHHHHHHHHTCCE
T ss_pred             HHHHHHHhCCCEEEEcCCCcch-hhHHHHHHHHHHcCCeE
Confidence            3344456799999999874322 22346777777777776

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*

Probab=81.32  E-value=36  Score=32.01  Aligned_cols=197  Identities=11%  Similarity=0.096  Sum_probs=107.0

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCC------CchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLKNF------NPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRL  106 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~------~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~  106 (420)
                      +.++.++-++.+.+.|+|.||+=-  +...      .+.+.+...++.. +.++...+.          .    .+-++.
T Consensus        25 ~~e~k~~i~~~L~~~Gv~~IE~g~--~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~~----------~----~~~i~~   88 (298)
T 2cw6_A           25 STPVKIKLIDMLSEAGLSVIETTS--FVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTP----------N----LKGFEA   88 (298)
T ss_dssp             CHHHHHHHHHHHHHTTCSEECCEE--CCCTTTCGGGTTHHHHHHHSCCCTTCBCCEECC----------S----HHHHHH
T ss_pred             CHHHHHHHHHHHHHcCcCEEEECC--CcCcccccccCCHHHHHHHHhhCCCCEEEEEcC----------C----HHhHHH
Confidence            456666666666778999999853  2111      1112222222211 223222111          1    123677


Q ss_pred             HHHhCCcEEEEEcccccc---------------hhHH-HhhcCCCCcEEE--EEccc---CCCCCCHHHHHHHHHHHHHc
Q 014691          107 AMELGADYIDVELQVARE---------------FNDS-IRGKKPEKCKVI--VSSHN---YQYTPSVEDLSNLVARIQAS  165 (420)
Q Consensus       107 ~~~~~~d~iDiEl~~~~~---------------~~~~-l~~~~~~~~kiI--~S~H~---f~~tP~~~el~~~~~~~~~~  165 (420)
                      +++.|++.|.|-....+.               ...+ +...+..+.++-  +++..   +...-+.+++.+.++.+.++
T Consensus        89 a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (298)
T 2cw6_A           89 AVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSM  168 (298)
T ss_dssp             HHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHT
T ss_pred             HHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHc
Confidence            888999999986554322               1111 122234455553  33221   11122568899999999999


Q ss_pred             CCCEEEEEeec--CCHHHHHHHHHHhccC--CCCEEEEecCCcch--hhhhhccccCCcccccccCC--CccCC---CCC
Q 014691          166 GADIVKFATTA--LDITDVARVFQITVHS--QVPIIGLVMGERGL--ISRILCAKFGGFLTFGTLEN--GIVSA---PGQ  234 (420)
Q Consensus       166 gaDivKia~~~--~s~~D~~~ll~~~~~~--~~p~I~~~MG~~G~--~SRi~~~~~Gs~ltf~~~~~--~~~sA---PGQ  234 (420)
                      |||.+.++=+.  -++.++.++++.+.+.  +.|+-..+=-..|.  ..=+.+-..|....-+++..  +.|.|   .|+
T Consensus       169 Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gla~An~laA~~aGa~~vd~tv~GlG~cp~a~g~aGN  248 (298)
T 2cw6_A          169 GCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGN  248 (298)
T ss_dssp             TCSEEEEEETTSCCCHHHHHHHHHHHHHHSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBTTSCCCCTTSCSSCCB
T ss_pred             CCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEEeecccccCCCCCCCCcCC
Confidence            99999999554  4688998888776542  35655554333333  22233333344333333332  12344   468


Q ss_pred             CCHHhHHHHHhc
Q 014691          235 PTIKDLLDLYNF  246 (420)
Q Consensus       235 ~~~~~l~~~~~~  246 (420)
                      ++.+++...++.
T Consensus       249 ~~~E~lv~~l~~  260 (298)
T 2cw6_A          249 LATEDLVYMLEG  260 (298)
T ss_dssp             CBHHHHHHHHHH
T ss_pred             hhHHHHHHHHHh
Confidence            988888877653

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=81.29  E-value=1.8  Score=43.37  Aligned_cols=35  Identities=29%  Similarity=0.316  Sum_probs=32.2

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+++++|||+|-.|-.++..|..+|.+|+++.|..
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  181 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGE  181 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence            57899999999999999999999999999998864

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=81.29  E-value=23  Score=34.40  Aligned_cols=83  Identities=14%  Similarity=0.091  Sum_probs=52.0

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCC-EEEEEecCC--C---CC-CchhHHHHH----HhhCCCcEEEEeccCCCCCCCC
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGAD-LVEIRLDGL--K---NF-NPRENIKTL----IKESPVPTLFTYRPIWEGGQYD   94 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D-~vElRlD~l--~---~~-~~~~~l~~l----~~~~~~PiI~T~R~~~eGG~~~   94 (420)
                      +.+.|.+.+.+|..+-++.+.+.++| .||+=+=+=  +   .+ .+.+.+.++    ++..++|+++-+|..       
T Consensus       131 vivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~~~PV~vKi~p~-------  203 (345)
T 3oix_A          131 HFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYFTKPLGIKLPPY-------  203 (345)
T ss_dssp             CEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC-------
T ss_pred             EEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHhCCCeEEEECCC-------
Confidence            55789999999999888776556766 999987531  0   11 111233333    344579999999852       


Q ss_pred             CCHHHHHHHHHHHHHhCCcEE
Q 014691           95 GDENERVDVLRLAMELGADYI  115 (420)
Q Consensus        95 ~~~~~~~~ll~~~~~~~~d~i  115 (420)
                      .+.++..++++.+-..++++|
T Consensus       204 ~~~~~~a~~~~~aga~~i~~i  224 (345)
T 3oix_A          204 FDIVHFDQAAAIFNXYPLTFV  224 (345)
T ss_dssp             CCHHHHHHHHHHHTTSCCSEE
T ss_pred             CCHHHHHHHHHHhCCCceEEE
Confidence            255555566655544445543

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=81.25  E-value=1.2  Score=44.97  Aligned_cols=35  Identities=26%  Similarity=0.362  Sum_probs=31.9

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+++++|||+|-+|-.++..|.++|.+|+++.|..
T Consensus       170 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  204 (458)
T 1lvl_A          170 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE  204 (458)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCC
Confidence            36899999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	420
d1gqna_	252	c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase	8e-73
d1sfla_	236	c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase	1e-71
d1p77a2	101	c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE	2e-28
d1vi2a2	102	c.58.1.5 (A:5-106) Putative shikimate dehydrogenas	3e-28
d1nyta2	101	c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE	3e-27
d1nvta2	110	c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE	3e-26
d1npya2	102	c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like	1e-25
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	2e-04
d1pr9a_	244	c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie	4e-04
d1yb1a_	244	c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase	4e-04
d1k2wa_	256	c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s	6e-04
d1xhla_	274	c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh	6e-04
d1nffa_	244	c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob	6e-04
d1xu9a_	269	c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase	7e-04
d1yxma1	297	c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re	7e-04
d1p77a1	171	c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE	8e-04
d1zema1	260	c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba	0.001
d1cyda_	242	c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul	0.001
d1iy8a_	258	c.2.1.2 (A:) Levodione reductase {Corynebacterium	0.001
d1fmca_	255	c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase	0.001
d1hdca_	254	c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr	0.001
d1o5ia_	234	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	0.001
d1ydea1	250	c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase	0.001
d1xg5a_	257	c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41	0.002
d1bdba_	276	c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy	0.002
d1vl8a_	251	c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga	0.002
d2bgka1	268	c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de	0.002
d1w6ua_	294	c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr	0.002
d1hxha_	253	c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge	0.002
d1spxa_	264	c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato	0.002
d2ag5a1	245	c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami	0.002
d2a4ka1	241	c.2.1.2 (A:2-242) beta-keto acyl carrier protein r	0.002
d1q7ba_	243	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	0.002
d1xkqa_	272	c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh	0.002
d1zk4a1	251	c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase	0.002
d2o23a1	248	c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr	0.002
d1sbya1	254	c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase	0.002
d1ae1a_	258	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	0.003
d1oaaa_	259	c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus	0.003
d1e5qa1	182	c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase	0.003
d1ulsa_	242	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	0.003
d1h5qa_	260	c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga	0.003
d2ae2a_	259	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	0.004
d1qsga_	258	c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli	0.004
d2h7ma1	268	c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacteri	0.004
d1npya1	167	c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like	0.004
d1uzma1	237	c.2.1.2 (A:9-245) beta-keto acyl carrier protein r	0.004

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} Length = 252

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

 Score =  226 bits (578), Expect = 8e-73
 Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 14/234 (5%)

Query: 24  TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPV 78
             I V +MG  ++ +  +      +  D++E R+D   +    +++ T  +        +
Sbjct: 16  PKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDI 75

Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVA-REFNDSIRGKKPEK 136
           P LFT+R   EGG+        + + R A++ G  D ID+EL     +   ++       
Sbjct: 76  PLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHN 135

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVH----- 191
             V++S+H++  TPS E++ + + ++QA GADI K A       DV  +   T+      
Sbjct: 136 VYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHY 195

Query: 192 SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
           +  P+I + M + G+ISR+    FG   TFG ++    SAPGQ  + DL  +  
Sbjct: 196 ADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQA--SAPGQIAVNDLRSVLM 247

>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]} Length = 236

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

 Score =  222 bits (568), Expect = 1e-71
 Identities = 57/234 (24%), Positives = 102/234 (43%), Gaps = 15/234 (6%)

Query: 26  ICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK----ESPVPT 80
           +   I  + S+++ ++          D++E+R+D  +N    +  + + K    +     
Sbjct: 4   VVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKL 63

Query: 81  LFTYRPIWEGGQYDGDENERVDVL-RLAMELGADYIDVELQVAREFNDS---IRGKKPEK 136
           L TYR   +GG      +  ++++  LA   G D ID+E Q   +       I   +   
Sbjct: 64  LVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYN 123

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVH----S 192
            +VI+S HN++ TP +++L  +  ++Q    + VK A    +  DV  + Q         
Sbjct: 124 KEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTM 183

Query: 193 QVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246
              ++G+ M + GLISR     FGG LT+G +      APGQ  + DL      
Sbjct: 184 DCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEP--QAPGQIDVTDLKAQVTL 235

>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

 Score =  105 bits (263), Expect = 2e-28
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCT 311
            ++ + G P+  SKSP++ N+          ++  L D     +    +      G + T
Sbjct: 2   DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNIT 61

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNT 352
            P KE A +  DE    AK   A N + +   DGKL+  NT
Sbjct: 62  SPFKERAYQLADEYSQRAKLAEACNTLKKLD-DGKLYADNT 101

>d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} Length = 102

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

 Score =  104 bits (261), Expect = 3e-28
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSC 310
            ++ G++  P+ HS SP + N+A +  G    ++   VD        +   +    G   
Sbjct: 3   YELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGV 62

Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNT 352
           ++P+K+ A +  DE+   AK +GA+N I+    DG L GYNT
Sbjct: 63  SMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYLRGYNT 102

>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (255), Expect = 3e-27
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCT 311
           + + + G P+ HSKSP ++ +  + +     +  +L    D       + S    G + T
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNT 352
           +P KE A    DE+   A   GAVN ++R + DG+L G NT
Sbjct: 62  VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNT 101

>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 110

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 99.8 bits (248), Expect = 3e-26
 Identities = 47/106 (44%), Positives = 60/106 (56%), Gaps = 4/106 (3%)

Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
           +   TKV G+IG PV HS SPI++N AFK  G N V+V   V  +++        +    
Sbjct: 7   INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66

Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNT 352
           GF+ TIPHK   +K  DE+D  A+ IGAVN I     DGK  GYNT
Sbjct: 67  GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIE--DGKAIGYNT 110

>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} Length = 102

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

 Score = 97.7 bits (243), Expect = 1e-25
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 249 MGPDTKVF-GIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAG 307
           +  DT++   + G+P   +     +N  +  +G N ++      DI    +   +    G
Sbjct: 2   INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59

Query: 308 FSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNT 352
            + ++P KE  +   DE+   A++I +VN I+    +G L  YNT
Sbjct: 60  CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNT 102

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420
           ++ ++ G G  GK LA      G  +V+ +R  E  +  
Sbjct: 2   RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAK 40

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           LAG+  +V GAG G G+       A GARVV  +RT  +L  L
Sbjct: 5   LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSL 47

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           + G++ ++ GAG G G+  AY      +++V+ +     L+  
Sbjct: 5   VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEET 47

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 39.0 bits (90), Expect = 6e-04
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           L GK  ++ G+  G G+A A     +GARV IA+   E  +  
Sbjct: 3   LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARAT 45

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
            +GK  ++ G+  G G++ A     +GA+V I  R  + L+  
Sbjct: 2   FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEET 44

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           S  L GK+ +V G   G G +      A+GA+VV  +   E  + +
Sbjct: 1   SGRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAM 46

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           L GK  +V GA  G G+ +AY     GA VV+  R+ E LQ++
Sbjct: 12  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV 54

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 7e-04
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           L G++ +V G   G GKA+       G+ VVIA+R  E L+  
Sbjct: 10  LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSA 52

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

 Score = 37.6 bits (86), Expect = 8e-04
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 11/68 (16%)

Query: 353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANR 412
           D +G ++ ++     RLN           +  +++GAGGA K +          +V+ANR
Sbjct: 1   DGIGLVTDLQ-----RLNWL------RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANR 49

Query: 413 TYENLQRL 420
           T+   + L
Sbjct: 50  TFSKTKEL 57

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

 Score = 38.2 bits (88), Expect = 0.001
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
             GK+ +V GAG   G A A     +G  + + +   E L++ 
Sbjct: 3   FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKA 45

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
            +G   +V GAG G G+       A GA+VV   RT  +L  L
Sbjct: 3   FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSL 45

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

 Score = 38.2 bits (88), Expect = 0.001
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
              ++ ++ G G G G+A A    A+GA++ + + + E L+  
Sbjct: 2   FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEAS 44

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 38.1 bits (88), Expect = 0.001
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           L GK  ++ GAG G GK +A      GA VV+++   +    +
Sbjct: 9   LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHV 51

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           L+GK  ++ G   G G   A  A A GARVV+A+   E     
Sbjct: 3   LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAAT 45

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           +  K  +V+ A  G G+A+A     +GA V I  R  E L+R 
Sbjct: 2   IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS 44

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
            AGK+ VV G G G G  +       GARVVI ++     + L
Sbjct: 4   YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRAL 46

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
              +L +V GA  G G A+A     +G +VV   RT  N++ L
Sbjct: 8   WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEEL 50

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           L G+  ++ G   G G+AL     A+GA+V + +++ E L  L
Sbjct: 3   LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAEL 45

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           L G++ +V G   G G  +A G    G  VV+A+R  E     
Sbjct: 3   LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEA 45

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           L  K+ ++ G   G G+  A      GA+VVIA+   ++ Q++
Sbjct: 4   LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKV 46

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
             GK+  + G G G GK +     + GA+ VIA+R  + L+  
Sbjct: 23  FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKAT 65

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           L GK+ +V G   G G  +      +GA+V  ++      Q+L
Sbjct: 4   LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQL 46

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
            A K+ ++ G+  G G+A A     +GA+V I  R  E L+  
Sbjct: 3   FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEET 45

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           L GK+ ++  A  G G+A A     +GA+V+  +     LQ L
Sbjct: 4   LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQEL 46

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           L+GK  +V GA  G G+A       +GA +V  +R    L   
Sbjct: 3   LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA 45

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
             GK+ +V GA  G G+A+A    A+GA+V+    +    Q +
Sbjct: 2   FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAI 44

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
            + K  ++ G+  G G+  A     +GA V I  R+ E L+  
Sbjct: 3   FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEET 45

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           S+ L GK+ ++ G   G G A+A     +GA+V+I  R  +  ++ 
Sbjct: 1   SNRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKA 46

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           + G + V+ G   G G A A     +GA  V+ +      +  
Sbjct: 3   VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQ 45

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQRL 420
           L  K  + + A GG G   +     +  +  +     EN   L
Sbjct: 3   LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTAL 45

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

 Score = 37.0 bits (85), Expect = 0.003
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           L G   +V G   G G A+       GARV   +R  + L   
Sbjct: 4   LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDEC 46

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 376 SSALAGKLFVVIGAG-GAGKALAYG---AKAKGARVVIANRTYENLQRL 420
           +  L   + V+ GA  G G+ALA       + G+ ++++ R+   L++L
Sbjct: 1   ADGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQL 49

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420
           A K  +++G+G   +         G +V +A RT E+ ++L
Sbjct: 1   ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKL 41

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           L  K  ++ GA  G G+A       +GAR+V  +     L+  
Sbjct: 3   LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREA 45

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
              K  +V G   G G A      A GA V +  R+  +   +
Sbjct: 7   FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEV 49

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

 Score = 36.5 bits (84), Expect = 0.004
 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           L G   +V G   G G  +     + GA V   +R  + L   
Sbjct: 6   LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDC 48

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

 Score = 36.4 bits (83), Expect = 0.004
 Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 379 LAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYENLQRL 420
           L+GK  +V G          +A     +GA +    +  +   R+
Sbjct: 3   LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV 47

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 379 LAGKLFVVIGAGGA---GKALAYGAKAKGARVVIANRTYENL 417
           L GK  +V G          +A  A+ +GA++V+       L
Sbjct: 4   LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL 45

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 13/65 (20%)

Query: 353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIAN 411
           DY+  +  IE     + +++            +V G+GG  KA+    K  G  ++ I  
Sbjct: 1   DYIAIVKLIE-----KYHLN-------KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYA 48

Query: 412 RTYEN 416
           R  + 
Sbjct: 49  RNVKT 53

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420
              +  +V G   G G A+A    A G +V + +R     + L
Sbjct: 5   FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	420
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	100.0
d1sfla_	236	Type I 3-dehydroquinate dehydratase {Staphylococcu	100.0
d1p77a2	101	Shikimate 5-dehydrogenase AroE {Haemophilus influe	100.0
d1vi2a2	102	Putative shikimate dehydrogenase YdiB {Escherichia	100.0
d1nyta2	101	Shikimate 5-dehydrogenase AroE {Escherichia coli [	100.0
d1nvta2	110	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	99.97
d1npya2	102	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	99.97
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	99.29
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	99.16
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	99.11
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.57
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.22
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.41
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.93
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.87
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.66
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.6
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.25
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.25
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.22
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.12
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.1
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.09
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.07
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.93
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.8
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.72
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.71
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.64
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.63
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.57
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.53
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.5
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.48
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.46
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.33
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.24
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.23
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.17
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.13
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.05
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.02
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.01
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.97
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.87
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	94.82
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.76
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.69
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.61
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.55
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.53
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.5
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.43
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.41
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.36
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.34
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.26
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	94.08
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	93.98
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.96
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	93.95
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	93.94
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	93.89
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	93.87
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	93.83
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.71
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	93.68
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	93.67
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.44
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.3
d1ad1a_	264	Dihydropteroate synthetase {Staphylococcus aureus	92.85
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	92.83
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.83
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.78
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	92.64
d1yx1a1	250	Hypothetical protein PA2260 {Pseudomonas aeruginos	92.61
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	92.49
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	92.44
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	92.35
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	92.3
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	92.13
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.03
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	91.94
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	91.9
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	91.74
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	91.7
d2q02a1	271	Putative cytoplasmic protein STM4435 {Salmonella t	91.6
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	91.51
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	91.47
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	91.4
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	91.24
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	91.06
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	91.05
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	91.0
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	90.86
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	90.77
d1ajza_	282	Dihydropteroate synthetase {Escherichia coli [TaxI	90.69
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	90.67
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	90.67
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	90.53
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	89.97
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	89.89
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	89.53
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	89.3
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	89.05
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	88.97
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	88.66
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	88.34
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	88.18
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	88.12
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	88.04
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	87.79
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	87.56
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	87.43
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.21
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	86.75
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	86.42
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	86.04
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	85.03
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	85.0
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	84.83
d1tx2a_	273	Dihydropteroate synthetase {Bacillus anthracis [Ta	84.76
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	84.61
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	84.59
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	84.22
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	84.15
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	83.98
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	83.74
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	83.64
d1wdda1	325	Ribulose 1,5-bisphosphate carboxylase-oxygenase {R	83.48
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	82.98
d2g0wa1	275	Hypothetical protein Lmo2234 {Listeria monocytogen	82.79
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	82.72
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	82.25
d1eyea_	270	Dihydropteroate synthetase {Mycobacterium tubercul	81.81
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	81.62
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	81.51
d1o66a_	260	Ketopantoate hydroxymethyltransferase PanB {Neisse	80.25
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	80.21
d1ad1a_	264	Dihydropteroate synthetase {Staphylococcus aureus	80.15
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	80.13

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=100.00  E-value=9.7e-58  Score=435.45  Aligned_cols=232  Identities=26%  Similarity=0.420  Sum_probs=207.7

Q ss_pred             ccccCCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHH----HHHhhC-CCcEEEEeccCC
Q 014691           14 LVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIK----TLIKES-PVPTLFTYRPIW   88 (420)
Q Consensus        14 ~~~~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~----~l~~~~-~~PiI~T~R~~~   88 (420)
                      +..-.++..+|+|||||++++.++++++++++...+||+||||+|+|.+..+.+.+.    .+++.. ++|+|||+|+++
T Consensus         6 v~~~~~g~g~pkIcv~l~~~~~~~~~~~~~~~~~~~aD~vE~RlD~l~~~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~   85 (252)
T d1gqna_           6 VKNLIIGEGMPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAK   85 (252)
T ss_dssp             ETTEEETSSSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCSCTTCHHHHHHHHHHHHHHCTTSCEEEECCBGG
T ss_pred             ECCEEecCCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEEccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechh
Confidence            344456678999999999999999999999998889999999999998765544443    333333 699999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcC
Q 014691           89 EGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASG  166 (420)
Q Consensus        89 eGG~~~~~~~~~~~ll~~~~~~~-~d~iDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~g  166 (420)
                      |||.|++++++|+++|+.++++| |||||||++..++.+..+.. .+..++++|+|||||++||+.+++.+++++|.++|
T Consensus        86 eGG~~~~~~~~~~~ll~~~~~~~~~d~iDiEl~~~~~~~~~li~~a~~~~~~vI~S~Hdf~~TP~~~~l~~~~~~m~~~g  165 (252)
T d1gqna_          86 EGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALG  165 (252)
T ss_dssp             GTCSBCCCHHHHHHHHHHHHHHSCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTT
T ss_pred             hCCCCCCCHHHHHHHHHHHHHcCCCceEeccccccHHHHHHHHHHhhcCCCeEEEEecCCCCCCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999 89999999998887776663 45689999999999999999999999999999999


Q ss_pred             CCEEEEEeecCCHHHHHHHHHHhcc-----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHH
Q 014691          167 ADIVKFATTALDITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLL  241 (420)
Q Consensus       167 aDivKia~~~~s~~D~~~ll~~~~~-----~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~  241 (420)
                      |||+|+|+||++.+|++++++++.+     .++|+|+|+||+.|++||+++++|||++||++++++  +||||+++++|+
T Consensus       166 aDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tya~~~~~--sAPGQ~~~~~l~  243 (252)
T d1gqna_         166 ADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQA--SAPGQIAVNDLR  243 (252)
T ss_dssp             CSEEEEEECCSSHHHHHHHHHHHHHHHHHTCSSCCEEEECTTTTHHHHHCHHHHTCCEEECBSSSC--CSTTCCBHHHHH
T ss_pred             CCeEEEEecCCCHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcchhHHHHHHHhCCceEeccCCCC--CCCCCCCHHHHH
Confidence            9999999999999999999988643     378999999999999999999999999999999865  999999999999


Q ss_pred             HHHhcc
Q 014691          242 DLYNFR  247 (420)
Q Consensus       242 ~~~~~~  247 (420)
                      ++++..
T Consensus       244 ~~l~~l  249 (252)
T d1gqna_         244 SVLMIL  249 (252)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=9.2e-52  Score=390.51  Aligned_cols=220  Identities=25%  Similarity=0.411  Sum_probs=186.0

Q ss_pred             cEEEEeecCC-CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHH----hh-CCCcEEEEeccCCCCCCCCCCH
Q 014691           24 TLICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLI----KE-SPVPTLFTYRPIWEGGQYDGDE   97 (420)
Q Consensus        24 ~~icv~l~~~-~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~----~~-~~~PiI~T~R~~~eGG~~~~~~   97 (420)
                      -+||+|++.. +.++.+.+..+....++|+||||+|+|.+.+.. ++..++    +. .++|+|||+|+++|||.+++++
T Consensus         2 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~D~vElRlD~l~~~~~~-~v~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~   80 (236)
T d1sfla_           2 VEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVD-QVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTN   80 (236)
T ss_dssp             CEEEEEECCCC---CHHHHHHHHTTTTCSEEEEECTTSTTCCHH-HHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCH
T ss_pred             CcEEEecCCchhHHHHHHHHHHhcCcCCCEEEEEeccccCCCHH-HHHHHHHHHHhcCCCCcEEEEEeCHHHCCCCCCCH
Confidence            4789999999 667776555455566899999999999976543 344333    21 3789999999999999999999


Q ss_pred             HHHHHHHHHHHHhC-CcEEEEEcccccchhH--HH-hhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 014691           98 NERVDVLRLAMELG-ADYIDVELQVAREFND--SI-RGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA  173 (420)
Q Consensus        98 ~~~~~ll~~~~~~~-~d~iDiEl~~~~~~~~--~l-~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia  173 (420)
                      ++|+++|+.+++.+ +||||||+..+.+..+  .+ ...++.+++||+|||||++||+.+++.+++++|.+.||||+|||
T Consensus        81 ~~~~~ll~~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~~~~vI~S~H~f~~TP~~~el~~~~~~~~~~gaDivKia  160 (236)
T d1sfla_          81 DSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLA  160 (236)
T ss_dssp             HHHHHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             HHHHHHHHHHHHhcCCchhhhhhcchhhHHHHHHHHHHhhcCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            99999999988864 9999999988765432  22 23456799999999999999999999999999999999999999


Q ss_pred             eecCCHHHHHHHHHHhcc----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691          174 TTALDITDVARVFQITVH----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (420)
Q Consensus       174 ~~~~s~~D~~~ll~~~~~----~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~  246 (420)
                      +||++.+|++++++++..    .+.|+|+||||+.|++||+++++|||++||++++++  +||||+++++|++++++
T Consensus       161 ~~~~~~~D~~~ll~~~~~~~~~~~~pii~~~MG~~G~~sRi~~~~~GS~~tya~~~~~--sAPGQ~~~~~lr~~l~~  235 (236)
T d1sfla_         161 VMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEP--QAPGQIDVTDLKAQVTL  235 (236)
T ss_dssp             ECCSSHHHHHHHHHHHHHHHHHCSSEEEEEECTGGGHHHHHTGGGGTBCEEEEBSSCC--SSTTCCBHHHHHHHHTT
T ss_pred             EecCCHHHHHHHHHHHHHHhhccCCCEEEEecCCcchHHHHHHHHhCCceEEccCCCC--CCCCCcCHHHHHHHHhh
Confidence            999999999999988643    378999999999999999999999999999999875  99999999999999864

>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=4.4e-34  Score=234.49  Aligned_cols=99  Identities=27%  Similarity=0.394  Sum_probs=94.4

Q ss_pred             ceEEeeeccCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHHH
Q 014691          253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAK  330 (420)
Q Consensus       253 ~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~  330 (420)
                      +++|||+|+||+||+||.|||.+|+++|+++.|.++++  ++++++++.++..+|.|+|||||||+++++++|++|+.|+
T Consensus         1 M~~~~viG~PI~hS~SP~ihn~~~~~~gi~~~y~~~~v~~~~~~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a~   80 (101)
T d1p77a2           1 MDLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITSPFKERAYQLADEYSQRAK   80 (101)
T ss_dssp             CEEEEEEESSCTTCCHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHH
T ss_pred             CCEEEEeCCCcccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHhccccceeeccHHHHHHHHHhccCCHHHH
Confidence            46899999999999999999999999999999999987  5899999999889999999999999999999999999999


Q ss_pred             HhcceeEEEEeccCCeEEEEec
Q 014691          331 SIGAVNCIIRRQSDGKLFGYNT  352 (420)
Q Consensus       331 ~iGAvNTi~~~~~~g~l~G~NT  352 (420)
                      .+||||||++.+ +|+|+||||
T Consensus        81 ~igAvNti~~~~-~g~l~G~NT  101 (101)
T d1p77a2          81 LAEACNTLKKLD-DGKLYADNT  101 (101)
T ss_dssp             HHTCCSEEEECT-TSCEEEECC
T ss_pred             HcCeeEEEEECC-CCEEEEecC
Confidence            999999999873 899999999

>d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.8e-34  Score=234.57  Aligned_cols=99  Identities=30%  Similarity=0.531  Sum_probs=95.5

Q ss_pred             CceEEeeeccCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHH
Q 014691          252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVA  329 (420)
Q Consensus       252 ~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A  329 (420)
                      ++++|||||+||+||+||.|||.+|+++|+|+.|.++++  ++++++++.+++.+|.|+|||||||+.+++++|++|+.|
T Consensus         2 k~~l~GliG~Pi~hS~SP~ihn~~f~~~gi~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a   81 (102)
T d1vi2a2           2 KYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAA   81 (102)
T ss_dssp             CCEEEEEEESCCTTCSHHHHHHHHHHHTTCSEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTSTTGGGGGCSEECHHH
T ss_pred             CeEEEEEEcCCcccccCHHHHHHHHHHcCCCcEEeeEeeCchHHHHHHHHhhhhccchhhhhhHHHHHHHHhcccCCHHH
Confidence            578999999999999999999999999999999999998  579999999988999999999999999999999999999


Q ss_pred             HHhcceeEEEEeccCCeEEEEec
Q 014691          330 KSIGAVNCIIRRQSDGKLFGYNT  352 (420)
Q Consensus       330 ~~iGAvNTi~~~~~~g~l~G~NT  352 (420)
                      +.+||||||+++  +|+|+||||
T Consensus        82 ~~igAvNti~~~--~g~l~G~NT  102 (102)
T d1vi2a2          82 KLVGAINTIVND--DGYLRGYNT  102 (102)
T ss_dssp             HHHTCCSEEEEE--TTEEEEECH
T ss_pred             HhhCcEEEEEEE--CCEEEEeCC
Confidence            999999999987  899999998

>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.4e-34  Score=233.91  Aligned_cols=99  Identities=30%  Similarity=0.521  Sum_probs=94.3

Q ss_pred             ceEEeeeccCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHHH
Q 014691          253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAK  330 (420)
Q Consensus       253 ~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~  330 (420)
                      ++.|||||+||+||+||.|||.+|+++|+|+.|.++++  +++.++++.++..+|.|+|||||||+++++++|++++.|+
T Consensus         1 M~~~~liG~pi~hS~SP~ihn~~~~~~gi~~~y~~~~v~~~~~~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a~   80 (101)
T d1nyta2           1 METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAA   80 (101)
T ss_dssp             CCSEEEEESSCTTCSHHHHHHHHHHHHTCCCCEEEEECCTTCHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHH
T ss_pred             CCEEEEeCCCcccccCHHHHHHHHHHcCCcchhhhhcCChHhHHHHHHHhhhccchhheeehHHHHHHHHHhccCChHHH
Confidence            36799999999999999999999999999999999988  5899999999889999999999999999999999999999


Q ss_pred             HhcceeEEEEeccCCeEEEEec
Q 014691          331 SIGAVNCIIRRQSDGKLFGYNT  352 (420)
Q Consensus       331 ~iGAvNTi~~~~~~g~l~G~NT  352 (420)
                      .+||||||++. ++|+|+||||
T Consensus        81 ~igAvNti~~~-~~g~l~G~NT  101 (101)
T d1nyta2          81 LAGAVNTLMRL-EDGRLLGDNT  101 (101)
T ss_dssp             HHTCCSEEEEC-TTSCEEEECC
T ss_pred             HhCcEEEEEEC-CCCeEEEeCC
Confidence            99999999987 3899999999

>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=2.2e-32  Score=227.65  Aligned_cols=104  Identities=45%  Similarity=0.670  Sum_probs=99.2

Q ss_pred             cccCCCceEEeeeccCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhc
Q 014691          247 RQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDE  324 (420)
Q Consensus       247 ~~~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~  324 (420)
                      .+++++|+.|||+|+||+||+||.|||.+|+++|+++.|.++++  ++++.+++.++..+|.|+|||||||++++++||+
T Consensus         5 ~mi~~~tk~~gliG~pi~~S~SP~ihn~~~~~~gi~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~   84 (110)
T d1nvta2           5 SMINAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNVTIPHKIEIMKYLDE   84 (110)
T ss_dssp             BCCCTTCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGGGGHHHHHHHHTCCEEEECTTSTTGGGGGCSE
T ss_pred             cccCCCccEEEEEcCCcccccCHHHHHHHHHHcCCcEEEeecccCHHHHHHHHHhhcccCcchhheehHHHHHHHHHhcc
Confidence            36788999999999999999999999999999999999999988  4789999999888999999999999999999999


Q ss_pred             ccHHHHHhcceeEEEEeccCCeEEEEec
Q 014691          325 VDTVAKSIGAVNCIIRRQSDGKLFGYNT  352 (420)
Q Consensus       325 l~~~A~~iGAvNTi~~~~~~g~l~G~NT  352 (420)
                      +|+.|+.+||||||++.  +|+|+||||
T Consensus        85 ~s~~a~~igavNti~~~--~~~l~G~NT  110 (110)
T d1nvta2          85 IDKDAQLIGAVNTIKIE--DGKAIGYNT  110 (110)
T ss_dssp             ECHHHHHHTCCCEEEEE--TTEEEEECC
T ss_pred             CCHHHHHhCcEEEEEEE--CCEEEEeCC
Confidence            99999999999999997  899999999

>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=99.97  E-value=3e-31  Score=217.73  Aligned_cols=101  Identities=25%  Similarity=0.443  Sum_probs=96.5

Q ss_pred             ccCCCceEE-eeeccCccccccHHHHHHHHHHcCCCceeeccccccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhccc
Q 014691          248 QMGPDTKVF-GIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (420)
Q Consensus       248 ~~~~~~~~~-~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~  326 (420)
                      +++++|+.| +++|+|  ||+||.|||++|+++|+|++|.++++++++++++.++..+|.|+|||||||+++++++|+++
T Consensus         1 mi~~~t~~~~~i~g~P--~s~SP~ihn~~~~~~gi~~~Y~~~~v~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~s   78 (102)
T d1npya2           1 MINKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIH   78 (102)
T ss_dssp             CCCTTCEEEEEECSSC--CSHHHHHHHHHHHHHTCCEEEEEECCSCHHHHHHHHHHHTCCEEEECTTCTTTTGGGCSEEC
T ss_pred             CcCCCCEEEEEEcCCc--ccCCHHHHHHHHHHcCCCeEEeeEecccHHHHHHHHhccccceeEEehhHHHHHHHHhhhCC
Confidence            367889996 899999  88999999999999999999999999999999999988999999999999999999999999


Q ss_pred             HHHHHhcceeEEEEeccCCeEEEEec
Q 014691          327 TVAKSIGAVNCIIRRQSDGKLFGYNT  352 (420)
Q Consensus       327 ~~A~~iGAvNTi~~~~~~g~l~G~NT  352 (420)
                      +.|+.+||||||+++  +|+|+||||
T Consensus        79 ~~a~~igAvNti~~~--~g~l~G~NT  102 (102)
T d1npya2          79 PSAQAIESVNTIVND--NGFLRAYNT  102 (102)
T ss_dssp             HHHHTTTCCCEEEEE--TTEEEEECH
T ss_pred             hhhhhcCcEEEEEEE--CCEEEEeCC
Confidence            999999999999997  899999998

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=1.3e-12  Score=115.01  Aligned_cols=57  Identities=33%  Similarity=0.409  Sum_probs=51.9

Q ss_pred             CHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhcC
Q 014691          353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL  420 (420)
Q Consensus       353 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~L  420 (420)
                      ||.||+.+|++.           +..++||+|+|+||||+|||++|+|.++|++|+|+|||.+|+++|
T Consensus         1 Dg~Gf~~~l~~~-----------~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l   57 (170)
T d1nyta1           1 DGVGLLSDLERL-----------SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEEL   57 (170)
T ss_dssp             HHHHHHHHHHHH-----------TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred             CHhHHHHHHHHc-----------CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHH
Confidence            899999999764           256789999999999999999999999999999999999998763

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=99.16  E-value=1.1e-11  Score=108.81  Aligned_cols=56  Identities=29%  Similarity=0.365  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhhcC
Q 014691          353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQRL  420 (420)
Q Consensus       353 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~~L  420 (420)
                      ||.||.++|++..           .+ ++|+|+||||||+|||++++|.+.|+ +|+|+|||.+|++.|
T Consensus         1 D~~G~~~~l~~~~-----------~~-~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L   57 (167)
T d1npya1           1 DYIAIVKLIEKYH-----------LN-KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYL   57 (167)
T ss_dssp             HHHHHHHHHHHTT-----------CC-TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHH
T ss_pred             ChHHHHHHHHHcC-----------CC-CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHH
Confidence            8999999997652           23 67899999999999999999999999 999999999998764

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=99.11  E-value=2.3e-11  Score=107.18  Aligned_cols=57  Identities=25%  Similarity=0.413  Sum_probs=50.2

Q ss_pred             CHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhcC
Q 014691          353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL  420 (420)
Q Consensus       353 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~L  420 (420)
                      ||.||+++|++.           +..+++|+|+|+||||+|||++++|.+.+.+|+|+|||.++++.|
T Consensus         1 D~~Gf~~~l~~~-----------~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l   57 (171)
T d1p77a1           1 DGIGLVTDLQRL-----------NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKEL   57 (171)
T ss_dssp             HHHHHHHHHHHT-----------TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CHHHHHHHHHHc-----------CCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHH
Confidence            899999999764           156789999999999999999999998555999999999998853

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.57  E-value=1.9e-08  Score=89.23  Aligned_cols=61  Identities=26%  Similarity=0.361  Sum_probs=54.3

Q ss_pred             EEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          349 GYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       349 G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviG-aGGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      |+|||+.|.+..+.+..          +.+++||+++|.| +||+|++++..|++.|++|++++|+.+++++
T Consensus         1 g~~~~~~~~v~~~~~~~----------~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~   62 (191)
T d1luaa1           1 GSNTTAAAGVALVVKAA----------GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQA   62 (191)
T ss_dssp             GHHHHHHHHHHHHHHHT----------TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             CCCccHHHHHHHHHHHc----------CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHH
Confidence            68999999998876654          2689999999999 5899999999999999999999999988764

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.22  E-value=6.9e-07  Score=76.91  Aligned_cols=44  Identities=41%  Similarity=0.628  Sum_probs=40.6

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhhcC
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQRL  420 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~~L  420 (420)
                      .++++++++|||+|++|+.++..|...|+ +++|+|||.+||++|
T Consensus        20 ~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l   64 (159)
T d1gpja2          20 GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVEL   64 (159)
T ss_dssp             SCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHH
T ss_pred             CCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHH
Confidence            35789999999999999999999999999 899999999999763

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=5.9e-05  Score=58.28  Aligned_cols=37  Identities=24%  Similarity=0.260  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      +++||+++|+|.|.+|++++..|.+.|++|++++.+.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence            5789999999999999999999999999999999754

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.93  E-value=0.00055  Score=62.26  Aligned_cols=56  Identities=27%  Similarity=0.379  Sum_probs=45.5

Q ss_pred             EEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          349 GYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       349 G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..|-|+..++...+..+..          .-+.|+|+|||||-+|.++|+.|++.|.+|+|+.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~----------~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1           8 FQENDYEEFLEIARNGLKA----------TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             GCCTTHHHHHHHHHHCSCC----------CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCccHHHHHHHHhcCCCC----------CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4577888888876665531          2245899999999999999999999999999998753

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.87  E-value=0.00043  Score=64.00  Aligned_cols=43  Identities=30%  Similarity=0.494  Sum_probs=38.7

Q ss_pred             cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      ..++||.+||-|+ ||.|++++..|++.|++|++.+|+.++.++
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~   64 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKA   64 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence            5799999999985 889999999999999999999999877543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00084  Score=58.07  Aligned_cols=36  Identities=36%  Similarity=0.504  Sum_probs=33.5

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+.|+|+|||+|.+|.++++.|++.|.+|+|++++.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            457999999999999999999999999999999975

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.60  E-value=0.0011  Score=52.50  Aligned_cols=39  Identities=21%  Similarity=0.304  Sum_probs=35.4

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      .+++||+|+|+|+|.+|.+-+..|.+.|++|++++.+..
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~   46 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI   46 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            468899999999999999999999999999999987543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.25  E-value=0.0045  Score=54.33  Aligned_cols=59  Identities=29%  Similarity=0.395  Sum_probs=47.5

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ++|.+.+++..+...+      ..+++||+|+|.|-|.+|+.++..|.+.|++|++++.+.++..
T Consensus         6 a~Gv~~~~~~~~~~~g------~~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~   64 (201)
T d1c1da1           6 AVGVFEAMKATVAHRG------LGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVA   64 (201)
T ss_dssp             HHHHHHHHHHHHHHTT------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             HHHHHHHHHHHHHHhC------CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHH
Confidence            5777777776543211      1368999999999999999999999999999999999877653

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.25  E-value=0.0029  Score=53.37  Aligned_cols=39  Identities=28%  Similarity=0.414  Sum_probs=35.2

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|.+|+|+|+|++|..++..+...|++|++++++++|.+
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~   65 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKRE   65 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHH
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHH
Confidence            578999999999999999988899999999999988754

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.22  E-value=0.0026  Score=54.40  Aligned_cols=39  Identities=33%  Similarity=0.400  Sum_probs=35.7

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      +|.+|+|+|||++|..++..+..+|+ +|++++++++|.+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~   67 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLK   67 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHH
T ss_pred             CCCEEEEECCCccchhheeccccccccccccccccccccc
Confidence            58899999999999999999999999 8999999988754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.12  E-value=0.0056  Score=51.37  Aligned_cols=39  Identities=41%  Similarity=0.488  Sum_probs=35.6

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|.+|+|+|+|++|..++..++..|++|++++++++|.+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~   64 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLE   64 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHH
Confidence            478999999999999999999999999999999988764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.10  E-value=0.0059  Score=51.06  Aligned_cols=39  Identities=26%  Similarity=0.386  Sum_probs=35.4

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|.+|+|+|+|++|.+++..++..|++|++++++++|.+
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~   65 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLE   65 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHH
Confidence            478999999999999999999999999999999987754

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.09  E-value=0.0036  Score=52.97  Aligned_cols=41  Identities=20%  Similarity=0.329  Sum_probs=36.4

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhhhh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYENLQ  418 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~--~i~v~nR~~~ka~  418 (420)
                      ....+|+.|||+|.+|.+++|.|...|.  ++.++++++++++
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~   59 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK   59 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHH
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhH
Confidence            3456799999999999999999999996  8999999988764

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0075  Score=51.01  Aligned_cols=42  Identities=38%  Similarity=0.455  Sum_probs=39.0

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ..+.||+++|+|-|-.||.+|..|..+|++|+++++++-+|-
T Consensus        20 ~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al   61 (163)
T d1li4a1          20 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINAL   61 (163)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             ceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhH
Confidence            568899999999999999999999999999999999987763

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.93  E-value=0.003  Score=52.35  Aligned_cols=36  Identities=22%  Similarity=0.433  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeC
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR  412 (420)
                      ..++||+|||+|+|.+|..-+..|.+.|++|+|+..
T Consensus         9 ~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1           9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             eeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            568999999999999999999999999999999964

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0094  Score=50.12  Aligned_cols=39  Identities=36%  Similarity=0.446  Sum_probs=35.5

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|.+|+|+|+|++|..++..+...|+ +|++++++++|.+
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~   65 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLS   65 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHH
Confidence            47799999999999999999999999 8999999988754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.72  E-value=0.0063  Score=51.86  Aligned_cols=39  Identities=31%  Similarity=0.590  Sum_probs=36.0

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      +|.+|+|+|+||.|..++..+..+|+ +|++++++++|.+
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~   68 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFE   68 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHH
Confidence            57899999999999999999999998 9999999988854

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.71  E-value=0.0058  Score=51.98  Aligned_cols=40  Identities=30%  Similarity=0.299  Sum_probs=36.8

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      +..+|+|||+|-+|+.++..+..+|++|++++++.++.++
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~   70 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSY   70 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHH
Confidence            4579999999999999999999999999999999888764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.64  E-value=0.012  Score=47.09  Aligned_cols=35  Identities=26%  Similarity=0.242  Sum_probs=32.4

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ++|+++|+|+|.+|.-++.+|.++|.+|+++.|..
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            46899999999999999999999999999998864

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.63  E-value=0.0052  Score=52.31  Aligned_cols=39  Identities=33%  Similarity=0.423  Sum_probs=35.3

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|.+|+|+|+||+|..++..+..+|+ +|++++++++|.+
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~   66 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVE   66 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHH
Confidence            47899999999999999999999999 8999999987754

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.57  E-value=0.0028  Score=56.94  Aligned_cols=35  Identities=20%  Similarity=0.344  Sum_probs=32.3

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      +++++|+|+|+||.|..++..|+..|+ ++++++.+
T Consensus        28 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          28 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            567899999999999999999999999 99999864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.53  E-value=0.0064  Score=51.67  Aligned_cols=40  Identities=30%  Similarity=0.493  Sum_probs=36.0

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      -.|.+|+|+|+||.+..++..++..|+ +|++++++++|.+
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~   66 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFP   66 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHH
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHH
Confidence            357899999999999999999999998 8999999987754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.50  E-value=0.0082  Score=50.59  Aligned_cols=40  Identities=25%  Similarity=0.391  Sum_probs=35.2

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhhhh
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYENLQ  418 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~--~i~v~nR~~~ka~  418 (420)
                      .+..++.|||+|.+|.+++|.|...|.  ++.+++++.++++
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~   58 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLR   58 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhh
Confidence            445689999999999999999999986  8999999988764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.48  E-value=0.0088  Score=50.91  Aligned_cols=39  Identities=28%  Similarity=0.448  Sum_probs=35.6

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|.+|+|+|+||.|..++..+...|+ +|++.+++++|.+
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~   67 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFP   67 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHH
Confidence            57899999999999999999999999 8999999988754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.46  E-value=0.0065  Score=53.68  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=32.5

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+|+|+|||+|.+|-++|..|+++|.+++|+.++.
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence            57899999999999999999999999999998764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.018  Score=48.24  Aligned_cols=39  Identities=33%  Similarity=0.348  Sum_probs=33.8

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|.+|+|+|+||+|..++..+...|++++++.++.+|.+
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~   68 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKRE   68 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHH
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHH
Confidence            578999999999999999989999997778888877653

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.24  E-value=0.012  Score=47.06  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=32.0

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      +|+++|||+|-+|--+|.+|.+.|.+|+++.|..
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence            5899999999999999999999999999999864

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.23  E-value=0.012  Score=50.99  Aligned_cols=39  Identities=33%  Similarity=0.412  Sum_probs=35.0

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|.+|+|+|+|+.|..++..+...|+ +|++++++++|.+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~   64 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLA   64 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhH
Confidence            57899999999999999998888999 9999999988754

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.17  E-value=0.011  Score=46.54  Aligned_cols=34  Identities=32%  Similarity=0.346  Sum_probs=31.6

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .|+++|||+|-+|--+|..|..+|.+|+++.|..
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecc
Confidence            3799999999999999999999999999999864

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=0.011  Score=46.66  Aligned_cols=34  Identities=24%  Similarity=0.196  Sum_probs=31.5

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .|+++|||+|-+|-.++..|.++|.+|+|+.|..
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence            3789999999999999999999999999999864

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.05  E-value=0.015  Score=49.07  Aligned_cols=39  Identities=31%  Similarity=0.559  Sum_probs=35.6

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      +|.+|+|+|+||.+..++..++..|+ +|.+++++++|.+
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~   67 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFA   67 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHH
Confidence            57899999999999999999999998 9999999988765

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.02  E-value=0.012  Score=46.74  Aligned_cols=34  Identities=24%  Similarity=0.187  Sum_probs=31.5

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .|+++|+|+|-+|--++.+|+.+|++|+++.|..
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            4799999999999999999999999999999863

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.01  E-value=0.026  Score=46.68  Aligned_cols=39  Identities=33%  Similarity=0.451  Sum_probs=35.5

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|.+|+|.|+|++|.+++..+...|++|+++.++++|.+
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~   65 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLE   65 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhh
Confidence            578999999999999999999999999999999988864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.97  E-value=0.0093  Score=51.33  Aligned_cols=40  Identities=25%  Similarity=0.234  Sum_probs=35.5

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      ...+|+|||+|-+|..++.....+|++|++++.+.++.++
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~   67 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQ   67 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHH
Confidence            4568999999999999999999999999999988776554

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.87  E-value=0.014  Score=46.50  Aligned_cols=33  Identities=21%  Similarity=0.283  Sum_probs=31.2

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      |+++|||+|-.|--.+..|..+|++|+|+.|..
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            799999999999999999999999999999864

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=94.82  E-value=0.03  Score=47.10  Aligned_cols=42  Identities=33%  Similarity=0.384  Sum_probs=39.0

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .-+.||+++|+|=|-.||.+|..|..+|++|+|+.+++-+|-
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~al   60 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAI   60 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHH
T ss_pred             ceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhH
Confidence            567899999999999999999999999999999999987764

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.76  E-value=0.016  Score=46.13  Aligned_cols=34  Identities=26%  Similarity=0.283  Sum_probs=31.6

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      +++++|+|+|.+|--+|.+|.++|++|+++.|.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence            4789999999999999999999999999999864

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.69  E-value=0.017  Score=48.80  Aligned_cols=39  Identities=28%  Similarity=0.391  Sum_probs=34.6

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|.+|+|+|+|++|.+++..+...|+ .|++.+++++|.+
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~   67 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLE   67 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHH
Confidence            57899999999999999999999999 7889999887754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.61  E-value=0.019  Score=46.45  Aligned_cols=35  Identities=29%  Similarity=0.320  Sum_probs=32.3

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+++++|||+|-+|-.++..|.+.|.+|+++.|..
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc
Confidence            36899999999999999999999999999999864

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.55  E-value=0.014  Score=45.82  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=31.4

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .++++|+|+|-+|--+|..|.++|++|+++.|.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence            4799999999999999999999999999998864

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.0083  Score=58.54  Aligned_cols=35  Identities=29%  Similarity=0.381  Sum_probs=32.0

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      +++.+|||+|+||.|..++..|+..|+ +|+|++.+
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             HhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            456789999999999999999999999 99999875

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.02  Score=45.75  Aligned_cols=33  Identities=24%  Similarity=0.197  Sum_probs=31.3

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      |+++|+|+|-+|--++..|..+|.+|+++.|..
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            799999999999999999999999999999964

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.026  Score=47.33  Aligned_cols=39  Identities=36%  Similarity=0.432  Sum_probs=34.1

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      +|++|||.|+ |++|.+++..+..+|++++++.++++|.+
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~   67 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQK   67 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccc
Confidence            5789999996 99999999999999998888888877654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.41  E-value=0.035  Score=46.52  Aligned_cols=39  Identities=23%  Similarity=0.365  Sum_probs=34.3

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|.+|+|+|+|++|..++..+...|+ .|++++++++|.+
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~   71 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLK   71 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHH
Confidence            47899999999999999988888898 8999999987754

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.36  E-value=0.021  Score=47.74  Aligned_cols=39  Identities=31%  Similarity=0.581  Sum_probs=34.7

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|.+|+|+|+||.+..++..++.+|+ .|++++++++|.+
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~   67 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFA   67 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHH
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHH
Confidence            57899999999999999999999998 8999999887754

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.34  E-value=0.025  Score=44.73  Aligned_cols=34  Identities=29%  Similarity=0.213  Sum_probs=31.5

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .++++|||+|-.|--.|..|+.+|++|+++.|..
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence            4789999999999999999999999999999864

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.26  E-value=0.029  Score=46.89  Aligned_cols=39  Identities=26%  Similarity=0.512  Sum_probs=35.1

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|.+|+|+|+||.+-.++..++..|+ +|++++++++|.+
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~   67 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFE   67 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHH
Confidence            57899999999999999999999998 8999999988765

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=94.08  E-value=0.62  Score=39.81  Aligned_cols=152  Identities=13%  Similarity=0.139  Sum_probs=86.8

Q ss_pred             eecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc---hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691           29 PIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNP---RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (420)
Q Consensus        29 ~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (420)
                      .||.++..+..+.++++++.|+++|-+|.=.+...+-   ...+..+.+..+.|+|+.-+                  ++
T Consensus        10 ~ITd~~~~~~~~~v~~~l~~Gv~~vqlR~k~~~~~e~~~~a~~l~~i~~~~~~~liind~------------------~~   71 (206)
T d1xi3a_          10 VITDRRLKPEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVDDR------------------VD   71 (206)
T ss_dssp             EECCTTTSCHHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEESC------------------HH
T ss_pred             EEeCCcccCHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEechh------------------HH
Confidence            3566666666778888889999999999654432111   12233444556889987522                  23


Q ss_pred             HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCC--H----
Q 014691          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALD--I----  179 (420)
Q Consensus       106 ~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s--~----  179 (420)
                      .|.+.++|.|=+.-..........   ...+.-+..|.|+.      +|    +..+...|+|++=+-..-.|  .    
T Consensus        72 lA~~~~adGvHl~~~~~~~~~~~~---~~~~~iig~s~h~~------~e----~~~a~~~g~DYi~~gpvf~T~tk~~~~  138 (206)
T d1xi3a_          72 VALAVDADGVQLGPEDMPIEVAKE---IAPNLIIGASVYSL------EE----ALEAEKKGADYLGAGSVFPTKTKEDAR  138 (206)
T ss_dssp             HHHHHTCSEEEECTTSCCHHHHHH---HCTTSEEEEEESSH------HH----HHHHHHHTCSEEEEECSSCC----CCC
T ss_pred             HHHhccCceEeeccccccHhhhhh---cccccccccccCCH------HH----HHHHHhcCCCEEEeccccccccccccc
Confidence            466778898877533221111111   12455667788852      33    34455679998876643222  1    


Q ss_pred             -HHHHHHHHHhccCCCCEEEEecCCcchhhhhh
Q 014691          180 -TDVARVFQITVHSQVPIIGLVMGERGLISRIL  211 (420)
Q Consensus       180 -~D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~  211 (420)
                       -....+-++.+..+.|+++++==..-.+..++
T Consensus       139 ~~g~~~l~~~~~~~~~Pv~AiGGI~~~ni~~~~  171 (206)
T d1xi3a_         139 VIGLEGLRKIVESVKIPVVAIGGINKDNAREVL  171 (206)
T ss_dssp             CCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHH
T ss_pred             cccHHHHHHHHHhcCCCEEEECCCCHHHHHHHH
Confidence             13334444555568898887543344455544

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=93.98  E-value=0.052  Score=48.24  Aligned_cols=59  Identities=22%  Similarity=0.358  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      ++|.+.+++..+....+     ..+++||+|+|-|-|.+|+.++..|.+.|++|++++.+..+.
T Consensus        17 g~GV~~~~~~~~~~~~g-----~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~   75 (230)
T d1leha1          17 AYGVYRGMKAAAKEAFG-----SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAV   75 (230)
T ss_dssp             HHHHHHHHHHHHHHHHS-----SCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHHhcC-----CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHH
Confidence            56777766554421100     246899999999999999999999999999999999887654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.96  E-value=0.033  Score=43.72  Aligned_cols=35  Identities=29%  Similarity=0.335  Sum_probs=32.5

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+|+++|+|+|-+|--.+..|..+|.+++++.|.+
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc
Confidence            47899999999999999999999999999999864

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.95  E-value=0.025  Score=48.39  Aligned_cols=39  Identities=28%  Similarity=0.314  Sum_probs=35.8

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      .+.||++.|||.|..|+.++.-+..+|++|+.++|+...
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~   77 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE   77 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cccCceEEEeccccccccceeeeeccccccccccccccc
Confidence            478999999999999999999999999999999997643

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=93.94  E-value=0.4  Score=41.66  Aligned_cols=144  Identities=21%  Similarity=0.232  Sum_probs=93.1

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (420)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~  111 (420)
                      ..|.+++..-++++.+.+...|=++-.+.      +..+..+..+++ -+.|+=.-..|..   +.+.+..-.+.+++.|
T Consensus        14 ~~T~~~i~~lc~~A~~~~~~aVcV~P~~v------~~a~~~l~~s~v-~v~~VigFP~G~~---~~~~k~~e~~~ai~~G   83 (211)
T d1ub3a_          14 TATLEEVAKAAEEALEYGFYGLCIPPSYV------AWVRARYPHAPF-RLVTVVGFPLGYQ---EKEVKALEAALACARG   83 (211)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEECCGGGH------HHHHHHCTTCSS-EEEEEESTTTCCS---CHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHhCCeEEEECHHHH------HHHHHHccCCCC-ceEEEEecccccC---cHHHHHHHHHHHHHcC
Confidence            34678888888888777766654433322      123333333343 4455544455443   4467777788899999


Q ss_pred             CcEEEEEcccc-------cch---hHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe----ec
Q 014691          112 ADYIDVELQVA-------REF---NDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT----TA  176 (420)
Q Consensus       112 ~d~iDiEl~~~-------~~~---~~~l~~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~----~~  176 (420)
                      ++-||+=++..       +.+   ++.+.. .+....|+|+-.+.+    +.+++.+..+-+.+.|||++|--+    ..
T Consensus        84 A~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L----~~~ei~~a~~~a~~aGadfiKTSTG~~~~g  159 (211)
T d1ub3a_          84 ADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYF----SPEEIARLAEAAIRGGADFLKTSTGFGPRG  159 (211)
T ss_dssp             CSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGS----CHHHHHHHHHHHHHHTCSEEECCCSSSSCC
T ss_pred             CCeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEeccccC----CHHHHHHHHHHHHHhccceEEecCCCCCCC
Confidence            99999966541       112   223332 233456999987765    457888888888899999999865    33


Q ss_pred             CCHHHHHHHHHHh
Q 014691          177 LDITDVARVFQIT  189 (420)
Q Consensus       177 ~s~~D~~~ll~~~  189 (420)
                      -+++|+..+.+..
T Consensus       160 at~e~v~~m~~~~  172 (211)
T d1ub3a_         160 ASLEDVALLVRVA  172 (211)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh
Confidence            5889997776654

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=93.89  E-value=0.024  Score=49.22  Aligned_cols=40  Identities=23%  Similarity=0.220  Sum_probs=36.4

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.||++.|+|.|..|+.++..|..+|++|+.++|...+
T Consensus        41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   80 (199)
T d1dxya1          41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK   80 (199)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             ccccceeeeeeecccccccccccccccceeeeccCCccch
Confidence            5678999999999999999999999999999999987554

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=93.87  E-value=0.027  Score=48.85  Aligned_cols=40  Identities=18%  Similarity=0.275  Sum_probs=35.9

Q ss_pred             ccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       376 ~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      +..+.||++.|+|.|.+|+.++..|..+|++|..+++...
T Consensus        38 g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1          38 GREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN   77 (197)
T ss_dssp             BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CccccCCeEEEecccccchhHHHhHhhhcccccccCcccc
Confidence            3568899999999999999999999999999999997643

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=93.83  E-value=0.035  Score=47.98  Aligned_cols=39  Identities=31%  Similarity=0.451  Sum_probs=35.8

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      ..+.||++.|||.|..|+.++..|..+|++|..++|...
T Consensus        45 ~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   83 (193)
T d1mx3a1          45 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS   83 (193)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             eeeeCceEEEeccccccccceeeeeccccceeeccCccc
Confidence            568999999999999999999999999999999998643

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.71  E-value=0.029  Score=44.60  Aligned_cols=32  Identities=22%  Similarity=0.108  Sum_probs=30.2

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ++++|||+|-+|--.|..|.++|++|+|+-|+
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            68999999999999999999999999999886

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=93.68  E-value=0.027  Score=41.39  Aligned_cols=40  Identities=25%  Similarity=0.245  Sum_probs=34.2

Q ss_pred             cCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       379 ~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      -++.+++|.|+ ||+|..++.-++.+|++|+.+.++++|.+
T Consensus        30 ~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~   70 (77)
T d1o8ca2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHE   70 (77)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHH
T ss_pred             cCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHH
Confidence            35788999986 88999999888999999998888887765

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.67  E-value=0.034  Score=46.73  Aligned_cols=39  Identities=36%  Similarity=0.417  Sum_probs=33.8

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      +|++|||.|+ |++|.+++..+...|++|+.+.++++|.+
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~   66 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA   66 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccc
Confidence            5789999996 89999999999999998888888877654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.44  E-value=0.024  Score=45.13  Aligned_cols=35  Identities=31%  Similarity=0.316  Sum_probs=32.2

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      .|+++|||+|-.|--.|..+..+|++|+|+.|...
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            37999999999999999999999999999998753

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.30  E-value=0.027  Score=43.66  Aligned_cols=36  Identities=11%  Similarity=0.219  Sum_probs=30.1

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeC
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANR  412 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR  412 (420)
                      .+++||+|+|+|+|-.|--++..|+..+.++++..|
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~   63 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSL   63 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEEC
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEe
Confidence            568999999999999999999999888776554444

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.85  E-value=0.84  Score=40.83  Aligned_cols=155  Identities=15%  Similarity=0.203  Sum_probs=97.2

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecCCC----CCCchhHHHHHH---hh-CCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691           33 ESVDKMVVDMGKANASGADLVEIRLDGLK----NFNPRENIKTLI---KE-SPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (420)
Q Consensus        33 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~l~~l~---~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (420)
                      .+.+++++.+++..+.|||+|.+=.=.-.    ..++.+++.++.   +. .+..+++.+-|.            +.+..
T Consensus        23 ~~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l~~~~~~iSIDT~------------~~eVa   90 (264)
T d1ad1a_          23 NNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIVGFDVKISVDTF------------RSEVA   90 (264)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEEEEECS------------CHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhhcccCcccchhhh------------hHHHH
Confidence            47889999999999999999988665542    223344555443   22 234556677652            34688


Q ss_pred             HHHHHhCCcEEE-EE-cccccchhHHHhhcCCCCcEEEEEcccCCCCCC----HHH----HHHHHHHHHHcCCCEEEEEe
Q 014691          105 RLAMELGADYID-VE-LQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPS----VED----LSNLVARIQASGADIVKFAT  174 (420)
Q Consensus       105 ~~~~~~~~d~iD-iE-l~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~----~~e----l~~~~~~~~~~gaDivKia~  174 (420)
                      +.|++.|+++|- |- ...+++..+ +..  ..+..+|+- |. .++|.    ..+    +.+.++.+...|.+--+|..
T Consensus        91 ~~al~~Ga~iINDVs~g~~d~~~~~-~va--~~~~~~ilm-H~-~~~~~~~~~~~~v~~~~~~~~~~~~~~Gi~~~~Iil  165 (264)
T d1ad1a_          91 EACLKLGVDIINDQWAGLYDHRMFQ-VVA--KYDAEIVLM-HN-GNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWL  165 (264)
T ss_dssp             HHHHHTTCCEEEETTTTSSCTHHHH-HHH--HTTCEEEEE-CC-CCTTCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             HHHHhcCCcEeeccccccccccHHH-HHh--hcCcceeee-ee-ccccccCccchhhhhHHHHHHHHHHhhccccceEEe
Confidence            899999999885 53 233444433 333  246777775 43 33442    233    44556677788877677887


Q ss_pred             e-----cCCHHHHHHHHHHhc---cCCCCEEEEecCCcc
Q 014691          175 T-----ALDITDVARVFQITV---HSQVPIIGLVMGERG  205 (420)
Q Consensus       175 ~-----~~s~~D~~~ll~~~~---~~~~p~I~~~MG~~G  205 (420)
                      =     .++.++++.|++-+.   ..+.|+ .++.....
T Consensus       166 DPGiGFgKt~~~n~~ll~~l~~~~~~g~Pi-LiG~SRKs  203 (264)
T d1ad1a_         166 DPGIGFAKTRNEEAEVMARLDELVATEYPV-LLATSRKR  203 (264)
T ss_dssp             ECCTTSSCCHHHHHHHHHCHHHHHTTCSCB-EECCTTSH
T ss_pred             ccCcCccccchhHHHHHHHHHHhhccCCce-eeeccHHH
Confidence            4     489999999987543   346773 34444443

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=92.83  E-value=0.086  Score=46.46  Aligned_cols=48  Identities=23%  Similarity=0.245  Sum_probs=40.2

Q ss_pred             HHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          355 VGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       355 ~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      .|++++++-.           +.++++.+++++|||.+|-.++.-|.+.|. ++++++|.
T Consensus        11 Agll~a~~~~-----------g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          11 AAFLNALKLT-----------EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             HHHHHHHHHH-----------TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHHHHh-----------CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            3667776543           246888999999999999999999999999 99999985

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.83  E-value=0.058  Score=44.79  Aligned_cols=39  Identities=28%  Similarity=0.377  Sum_probs=34.1

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~-~i~v~nR~~~ka~  418 (420)
                      .|.+++|+|+ |++|..++..+...|+ +|+++.++++|.+
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~   67 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVE   67 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHH
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHH
Confidence            4789999995 8999999998888897 9999999987754

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.78  E-value=0.044  Score=43.78  Aligned_cols=34  Identities=18%  Similarity=0.235  Sum_probs=31.6

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .++++|+|+|-.|--++..+..+|++|+++.|..
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence            4799999999999999999999999999999864

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=92.64  E-value=1.4  Score=39.00  Aligned_cols=159  Identities=19%  Similarity=0.210  Sum_probs=95.8

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCC-CCCch-hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH---HHHHHH
Q 014691           32 GESVDKMVVDMGKANASGADLVEIRLDGLK-NFNPR-ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER---VDVLRL  106 (420)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~---~~ll~~  106 (420)
                      ..+++++..    +.+.|||-|||.-++-. .+.|. ..++.+++..++|+-+=+|.+  ||-|-.++++.   .+-++.
T Consensus         7 v~s~~~a~~----A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~iPv~vMIRPR--~GdF~Ys~~E~~~M~~di~~   80 (247)
T d1twda_           7 CYSMECALT----AQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPR--GGDFCYSDGEFAAILEDVRT   80 (247)
T ss_dssp             ESSHHHHHH----HHHTTCSEEEECBCGGGTCBCCCHHHHHHHHHHCCSCEEEBCCSS--SSCSCCCHHHHHHHHHHHHH
T ss_pred             eCCHHHHHH----HHHcCCCEEEEcCCcccCCCCCCHHHHHHHHHhcCCCeEEEEecC--CCCCCCCHHHHHHHHHHHHH
Confidence            556666654    45679999999988643 34442 346667777899999999953  56666676544   344566


Q ss_pred             HHHhCCcEEEEE-----cccccchhHHHhhcCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHH
Q 014691          107 AMELGADYIDVE-----LQVAREFNDSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTALDIT  180 (420)
Q Consensus       107 ~~~~~~d~iDiE-----l~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~  180 (420)
                      +.++|++.|=+=     -..+.+..+++... .++.++  .||- |+.+++.   .+-++.+.++|.+=+==..-+.+..
T Consensus        81 ~k~~G~dGvV~G~L~~dg~iD~~~~~~L~~~-a~~l~v--TFHRAfD~~~d~---~~al~~Li~lG~~rILTSGg~~~a~  154 (247)
T d1twda_          81 VRELGFPGLVTGVLDVDGNVDMPRMEKIMAA-AGPLAV--TFHRAFDMCANP---LYTLNNLAELGIARVLTSGQKSDAL  154 (247)
T ss_dssp             HHHTTCSEEEECCBCTTSSBCHHHHHHHHHH-HTTSEE--EECGGGGGCSCH---HHHHHHHHHHTCCEEEECTTSSSTT
T ss_pred             HHHcCCCeEEEEEECCCCCccHHHHHHHHHH-hcccCe--eeehhhhhhCCH---HHHHHHHHhcCCCeEeccCCCCchh
Confidence            777899877552     22344556666643 235554  5675 8888864   4456677777854332223334445


Q ss_pred             HHHHHHH-HhccCCCCEEEEecC
Q 014691          181 DVARVFQ-ITVHSQVPIIGLVMG  202 (420)
Q Consensus       181 D~~~ll~-~~~~~~~p~I~~~MG  202 (420)
                      |.+..++ +....+.++|..+-|
T Consensus       155 ~G~~~L~~L~~~a~~~iIm~GgG  177 (247)
T d1twda_         155 QGLSKIMELIAHRDAPIIMAGAG  177 (247)
T ss_dssp             TTHHHHHHHHTSSSCCEEEEESS
T ss_pred             HHHHHHHHHHHhcCCcEEEecCC
Confidence            5544443 444445455544444

>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: KguE-like
domain: Hypothetical protein PA2260
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.61  E-value=0.35  Score=42.33  Aligned_cols=75  Identities=25%  Similarity=0.264  Sum_probs=48.9

Q ss_pred             HhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEec--cCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcc
Q 014691           43 GKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYR--PIWEGGQYDGDENERVDVLRLAMELGADYIDVELQ  120 (420)
Q Consensus        43 ~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R--~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~  120 (420)
                      +.+.+.|+|.||+|-+++......+.++.+++...+++....-  ...+.+..   .+...+.++.|..+|+.+|-+...
T Consensus        26 ~~~a~~G~dgIEi~~~~~~~~~~~~~l~~~~~~~GL~i~~~~~~~~~~~~~~~---~~~~~~~i~~A~~LG~~~v~~~~g  102 (250)
T d1yx1a1          26 PLLAMAGAQRVELREELFAGPPDTEALTAAIQLQGLECVFSSPLELWREDGQL---NPELEPTLRRAEACGAGWLKVSLG  102 (250)
T ss_dssp             HHHHHHTCSEEEEEGGGCSSCCCHHHHHHHHHHTTCEEEEEEEEEEECTTSSB---CTTHHHHHHHHHHTTCSEEEEEEE
T ss_pred             HHHHHhCCCEEEEecccCCCcchHHHHHHHHHHcCCEEEEecccccccCchhh---HHHHHHHHHHHHHhCCCEEEEeec
Confidence            3445679999999998877655556788888888887753321  11222221   234456778888889888876543

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.49  E-value=0.062  Score=46.19  Aligned_cols=38  Identities=24%  Similarity=0.361  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      .+++||+|+|||+|-+|--+++.++..+++++++-|+.
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            46899999999999999999999999999877777653

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=92.44  E-value=0.094  Score=46.78  Aligned_cols=49  Identities=24%  Similarity=0.342  Sum_probs=39.4

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEE
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVI  409 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v  409 (420)
                      ++|.+.+++..+...       +.+++||+|+|-|.|-+|+.++..|.+.|++|+-
T Consensus        11 g~Gv~~~~~~~~~~~-------~~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~   59 (242)
T d1v9la1          11 GFGVAVATREMAKKL-------WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIA   59 (242)
T ss_dssp             HHHHHHHHHHHHHHH-------HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             hHHHHHHHHHHHHHc-------CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            567777776665421       2478999999999999999999999999996553

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.35  E-value=1.2  Score=39.38  Aligned_cols=143  Identities=20%  Similarity=0.117  Sum_probs=91.4

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (420)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~  111 (420)
                      ..|.+++..-++++.+.+...|=++--+.      +..+..++.+++.+ .|+=.-..|-.   +-+.+..-.+.+++.|
T Consensus        47 ~~t~e~i~~lc~~A~~~~~aaVcV~P~~v------~~a~~~L~gs~v~v-~tVigFP~G~~---~~~~K~~Ea~~Ai~~G  116 (251)
T d1o0ya_          47 FATPDDIKKLCLEARENRFHGVCVNPCYV------KLAREELEGTDVKV-VTVVGFPLGAN---ETRTKAHEAIFAVESG  116 (251)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHTTSCCEE-EEEESTTTCCS---CHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHhhcCceEEEECHHHH------HHHHHHhcCCCceE-EeeccCCCCCC---cHHHHHHHHHHHHHcC
Confidence            34578888888888887766665543332      23444444455554 45543333332   4467777788899999


Q ss_pred             CcEEEEEcccc-------cch---hHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe----ec
Q 014691          112 ADYIDVELQVA-------REF---NDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT----TA  176 (420)
Q Consensus       112 ~d~iDiEl~~~-------~~~---~~~l~~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~----~~  176 (420)
                      ++-||+=++..       +.+   ++.+.. .+..-.|||+-...+    +.+++....+-+...|||++|-.+    ..
T Consensus       117 AdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L----~~~e~~~a~~ia~~aGadfvKTSTGf~~~g  192 (251)
T d1o0ya_         117 ADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYL----DTEEKIAACVISKLAGAHFVKTSTGFGTGG  192 (251)
T ss_dssp             CSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGC----CHHHHHHHHHHHHHTTCSEEECCCSSSSCC
T ss_pred             CceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccceeeeeccccc----CcHHHHHHHHHHHHhCcceeeccCCCCCCC
Confidence            99999966542       112   222332 244577889865544    567788888888899999999854    34


Q ss_pred             CCHHHHHHHHHH
Q 014691          177 LDITDVARVFQI  188 (420)
Q Consensus       177 ~s~~D~~~ll~~  188 (420)
                      -+++|+..+.+.
T Consensus       193 at~e~V~~m~~~  204 (251)
T d1o0ya_         193 ATAEDVHLMKWI  204 (251)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHH
Confidence            578888665544

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=92.30  E-value=1.6  Score=38.34  Aligned_cols=122  Identities=20%  Similarity=0.142  Sum_probs=74.8

Q ss_pred             hhhhcCCCEEEEEecCCCCCCc--hhHHHHHHh---hCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEE
Q 014691           44 KANASGADLVEIRLDGLKNFNP--RENIKTLIK---ESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVE  118 (420)
Q Consensus        44 ~~~~~~~D~vElRlD~l~~~~~--~~~l~~l~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE  118 (420)
                      +++..|+|+|=+.+.+-++.+.  .+.+.++.+   +..+|+++-.-....+-....+.+.-....+.+.++|+|.|-++
T Consensus        98 ~a~rlGadaV~~~v~~g~~~e~~~l~~~~~v~~e~~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDivK~~  177 (251)
T d1ojxa_          98 EAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIK  177 (251)
T ss_dssp             HHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEEC
T ss_pred             HHHhchhceEEEEEeCCCCchHHHHHHHHHHHHHHHHcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCCEEEec
Confidence            3446799999999986554322  122334443   35899987765432222223334433445778889999999999


Q ss_pred             cccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCC
Q 014691          119 LQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGAD  168 (420)
Q Consensus       119 l~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaD  168 (420)
                      +..+.+-+...... .....|+++-=  ....+.+++.+.++.+.+.||-
T Consensus       178 ~p~~~~~~~~~v~~-a~~~pv~~~gG--~~~~~~~~~l~~~~~a~~~Ga~  224 (251)
T d1ojxa_         178 YTGDPKTFSWAVKV-AGKVPVLMSGG--PKTKTEEDFLKQVEGVLEAGAL  224 (251)
T ss_dssp             CCSSHHHHHHHHHH-TTTSCEEEECC--SCCSSHHHHHHHHHHHHHTTCC
T ss_pred             CCCcHHHHHHHHHh-cCCCceEEeCC--CCCCCHHHHHHHHHHHHHCCCc
Confidence            98766555544422 24556666531  2233567788888887788874

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.13  E-value=0.058  Score=45.47  Aligned_cols=39  Identities=33%  Similarity=0.428  Sum_probs=33.7

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      +|++|||.|+ ||+|.+++.-.+..|++|+.+.|++++.+
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~   68 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIA   68 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHH
Confidence            5889999998 55999999988999999998889888764

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.14  Score=43.17  Aligned_cols=48  Identities=21%  Similarity=0.290  Sum_probs=40.4

Q ss_pred             HHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeCC
Q 014691          355 VGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       355 ~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR~  413 (420)
                      .|++.-|++.           +.+++||+++|||.+. +||-++.-|.+.|+.|++++..
T Consensus        24 ~aii~lL~~~-----------~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~   72 (170)
T d1a4ia1          24 KGCLELIKET-----------GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK   72 (170)
T ss_dssp             HHHHHHHHTT-----------TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             HHHHHHHHHh-----------CcccccceEEEEecCCccchHHHHHHHhccCceEEEecc
Confidence            4666666553           3678999999999988 9999999999999999999874

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.94  E-value=0.1  Score=43.13  Aligned_cols=35  Identities=31%  Similarity=0.330  Sum_probs=30.5

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      ..+++|+|||+|-+|-=++..+..+|+ +|+++-|.
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            346789999999999999988999999 79888874

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.90  E-value=0.082  Score=45.14  Aligned_cols=40  Identities=25%  Similarity=0.234  Sum_probs=35.9

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.++++.|+|.|.+|+.++.-|..+|++|+.++|+...
T Consensus        40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   79 (188)
T d1sc6a1          40 FEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKL   79 (188)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             ccccceEEEEeecccchhhhhhhcccccceEeeccccccc
Confidence            4678999999999999999999999999999999987543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=91.74  E-value=0.051  Score=45.46  Aligned_cols=39  Identities=28%  Similarity=0.290  Sum_probs=33.2

Q ss_pred             CCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .|++|+|.|+|| +|.+++.-+...|++|+++.++++|.+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~   67 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQ   67 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHH
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHH
Confidence            478999997655 999998888889999999999988764

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.70  E-value=0.57  Score=40.30  Aligned_cols=116  Identities=21%  Similarity=0.249  Sum_probs=72.0

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEE---EeccCCCCCCCCCCHHHHHH
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLF---TYRPIWEGGQYDGDENERVD  102 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~---T~R~~~eGG~~~~~~~~~~~  102 (420)
                      |...|...+.+++..-++.+.+.|.+++|+.+..   .+..+.++.+.....--+++   |+.+          .    +
T Consensus        11 iipvlr~~~~~~a~~~~~al~~~Gi~~iEitlr~---p~a~~~i~~l~~~~~~~~~vGaGTV~~----------~----~   73 (202)
T d1wa3a1          11 IVAVLRANSVEEAKEKALAVFEGGVHLIEITFTV---PDADTVIKELSFLKEKGAIIGAGTVTS----------V----E   73 (202)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTS---TTHHHHHHHTHHHHHTTCEEEEESCCS----------H----H
T ss_pred             EEEEEECCCHHHHHHHHHHHHHcCCCEEEEecCC---ccHHHHHHHHHHhcCCCcEEEeccccc----------H----H
Confidence            3345889999999999999889999999998763   12234455544322112333   4442          2    3


Q ss_pred             HHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691          103 VLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       103 ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi  172 (420)
                      -++.+++.|++++ |-=..++++.+...   +.+..+|-..-    ||+  |    +.++.++|+|++|+
T Consensus        74 ~~~~a~~aGa~fi-vsP~~~~~v~~~~~---~~~i~~iPGv~----Tps--E----i~~A~~~G~~~lK~  129 (202)
T d1wa3a1          74 QCRKAVESGAEFI-VSPHLDEEISQFCK---EKGVFYMPGVM----TPT--E----LVKAMKLGHTILKL  129 (202)
T ss_dssp             HHHHHHHHTCSEE-ECSSCCHHHHHHHH---HHTCEEECEEC----SHH--H----HHHHHHTTCCEEEE
T ss_pred             HHHHHHhhcccEE-eCCCCcHHHHHHHH---hcCCceeCCcC----cHH--H----HHHHHHCCCCEEEe
Confidence            4667888999988 43344454544433   34556665432    553  3    33445799999997

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Putative cytoplasmic protein STM4435
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.60  E-value=0.99  Score=39.54  Aligned_cols=79  Identities=15%  Similarity=0.103  Sum_probs=45.9

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCC----CchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHH----HHHHH
Q 014691           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNF----NPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDEN----ERVDV  103 (420)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~----~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~----~~~~l  103 (420)
                      .=++++.++.+.   +.|.|.||||.|.....    ...++++.++++..++++--.-    .+.+...++    .-.++
T Consensus        17 ~l~lee~l~~a~---~~G~dgiEl~~~~~~~~~~~~~~~~~~k~~l~~~gl~i~~l~~----~~~~~~~~~~~~~~~~~~   89 (271)
T d2q02a1          17 GLSIEAFFRLVK---RLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINA----VYPFNQLTEEVVKKTEGL   89 (271)
T ss_dssp             TSCHHHHHHHHH---HTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEEE----ETTTTSCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHH---HhCCCEEEEecCcccccccccCCHHHHHHHHHHcCCcEEEeec----ccccCCCCHHHHHHHHHH
Confidence            335777776554   56999999998865422    2345788887777776542111    122222222    22345


Q ss_pred             HHHHHHhCCcEEEE
Q 014691          104 LRLAMELGADYIDV  117 (420)
Q Consensus       104 l~~~~~~~~d~iDi  117 (420)
                      ++.|.++|+..|=+
T Consensus        90 i~~a~~lG~~~v~~  103 (271)
T d2q02a1          90 LRDAQGVGARALVL  103 (271)
T ss_dssp             HHHHHHHTCSEEEE
T ss_pred             HHHHHHcCCcEEEE
Confidence            56666777776644

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=91.51  E-value=0.066  Score=48.95  Aligned_cols=32  Identities=41%  Similarity=0.645  Sum_probs=29.6

Q ss_pred             EEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       383 ~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      -|+|||+|.+|.++++.|++.|++|.|+.+..
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999998754

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.47  E-value=0.11  Score=44.17  Aligned_cols=40  Identities=30%  Similarity=0.326  Sum_probs=35.8

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN  416 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k  416 (420)
                      ..+.||++.|+|.|..|+.++.-+..+|++|..++|...+
T Consensus        40 ~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~   79 (184)
T d1ygya1          40 TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP   79 (184)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH
T ss_pred             ccccceeeeeccccchhHHHHHHhhhccceEEeecCCCCh
Confidence            4678999999999999999999999999999999986543

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=91.40  E-value=0.072  Score=47.74  Aligned_cols=35  Identities=34%  Similarity=0.474  Sum_probs=30.6

Q ss_pred             CCCEEEEEccchHHHHHHHHHHh-CCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKA-KGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~-~g~~i~v~nR~~  414 (420)
                      ....|+|||||.+|.++++.|++ .|.+|+|+.+.+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            34579999999999999999986 599999999864

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.24  E-value=0.072  Score=50.52  Aligned_cols=32  Identities=34%  Similarity=0.448  Sum_probs=28.9

Q ss_pred             EEEEEccchHHHHHHHHHHh------CCCeEEEEeCCh
Q 014691          383 LFVVIGAGGAGKALAYGAKA------KGARVVIANRTY  414 (420)
Q Consensus       383 ~vlviGaGGaara~~~aL~~------~g~~i~v~nR~~  414 (420)
                      -|+|||+|.||.++|+.|++      .|.+|.|+.|..
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            59999999999999999987      788999999863

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.06  E-value=0.13  Score=44.58  Aligned_cols=37  Identities=35%  Similarity=0.441  Sum_probs=31.1

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHH--------------------hCCC-eEEEEeCC
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAK--------------------AKGA-RVVIANRT  413 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~--------------------~~g~-~i~v~nR~  413 (420)
                      .++.||+|+|||+|-+|-=++..|.                    ..|+ +|+++.|.
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RR   92 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRR   92 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSS
T ss_pred             ccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEEC
Confidence            4567999999999999988887665                    6888 89999984

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.05  E-value=0.14  Score=40.67  Aligned_cols=37  Identities=16%  Similarity=0.297  Sum_probs=30.9

Q ss_pred             CCEEEEEccch-----------HHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          381 GKLFVVIGAGG-----------AGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       381 ~k~vlviGaGG-----------aara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      .|++||||+|+           ++--++.+|.++|+++.++|-|++..
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV   51 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV   51 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh
Confidence            57999999986           45567889999999999999887643

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.00  E-value=0.15  Score=39.82  Aligned_cols=36  Identities=25%  Similarity=0.460  Sum_probs=32.4

Q ss_pred             CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      .+.++.|||+|--||..+.+..++|+++.+++.+++
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            346899999999999999999999999999998754

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=90.86  E-value=0.13  Score=44.15  Aligned_cols=40  Identities=23%  Similarity=0.243  Sum_probs=35.3

Q ss_pred             ccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       376 ~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      +..+.||++.|+|.|..|+.++.-|..+|+++..+++...
T Consensus        42 ~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1          42 GEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             cceecccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            3567899999999999999999999999999999997543

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.77  E-value=0.073  Score=44.53  Aligned_cols=39  Identities=28%  Similarity=0.353  Sum_probs=33.1

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      +|++|||.|+ |++|.+++.-+..+|+++.++.++.++.+
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~   64 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKRE   64 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHH
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeeccccccc
Confidence            4789999996 99999999888899998888888877654

>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Escherichia coli [TaxId: 562]

Probab=90.69  E-value=1.5  Score=39.52  Aligned_cols=163  Identities=14%  Similarity=0.211  Sum_probs=97.1

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecCCC----CCCchhHHHHHH---hh--CCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691           33 ESVDKMVVDMGKANASGADLVEIRLDGLK----NFNPRENIKTLI---KE--SPVPTLFTYRPIWEGGQYDGDENERVDV  103 (420)
Q Consensus        33 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~l~~l~---~~--~~~PiI~T~R~~~eGG~~~~~~~~~~~l  103 (420)
                      .+.+++++++++....|||+|.+=-=.-.    ..+..+++.++.   +.  ...++++.+-|.            +.++
T Consensus        35 ~~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~vs~eeE~~Rl~pvi~~l~~~~~~~iSIDT~------------~~eV  102 (282)
T d1ajza_          35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISVDTS------------KPEV  102 (282)
T ss_dssp             SHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC------------CHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCccccccccCCcHHHHHHHHHHHHHHHhhcccceEEEEec------------ChHH
Confidence            36678899999988999999988655432    122233444332   11  123445576652            3458


Q ss_pred             HHHHHHhCCcEE-EEEcccccchhHHHhhcCCCCcEEEEEcccC-----CCCCC----H----HHHHHHHHHHHHcCCCE
Q 014691          104 LRLAMELGADYI-DVELQVAREFNDSIRGKKPEKCKVIVSSHNY-----QYTPS----V----EDLSNLVARIQASGADI  169 (420)
Q Consensus       104 l~~~~~~~~d~i-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f-----~~tP~----~----~el~~~~~~~~~~gaDi  169 (420)
                      .+.|++.|+++| ||.-...++.++.+..   .+..+|+.|+.-     +..|.    .    +.+.+.++.+.+.|.+-
T Consensus       103 a~~al~~Ga~iINDvsg~~~~~~~~~va~---~~~~~vlmh~~g~p~~~~~~~~y~dv~~~v~~~~~~~~~~~~~~GI~~  179 (282)
T d1ajza_         103 IRESAKVGAHIINDIRSLSEPGALEAAAE---TGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAK  179 (282)
T ss_dssp             HHHHHHTTCCEECCTTTTCSTTHHHHHHH---HTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHhcCceEEechhhcccchhHHHhhc---cCceEEEeccCCCccccccCCcccchhhhhHHHHHHHHHHHHHcCCcH
Confidence            889999999987 4543333444443332   356777776531     11121    1    23456677788888544


Q ss_pred             EEEEeec-----CCHHHHHHHHHHhcc---CCCCEEEEecCCcchhhhhh
Q 014691          170 VKFATTA-----LDITDVARVFQITVH---SQVPIIGLVMGERGLISRIL  211 (420)
Q Consensus       170 vKia~~~-----~s~~D~~~ll~~~~~---~~~p~I~~~MG~~G~~SRi~  211 (420)
                      =+|.+=|     ++.++++.+++-+..   .+.|+ .++.....-+..++
T Consensus       180 ~~IilDPGiGFgK~~~~n~~ll~~l~~~~~~~~Pi-LvG~SRKsfi~~~~  228 (282)
T d1ajza_         180 EKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPL-LVGMSRKSMIGQLL  228 (282)
T ss_dssp             GGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCB-EECCTTCHHHHHHH
T ss_pred             hhEecCCCcCcCCChhhhHHHHhhcchhhccccce-EEeccHHHHHHHHh
Confidence            5677655     789999999886544   36675 45555555444444

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.67  E-value=0.14  Score=44.71  Aligned_cols=37  Identities=22%  Similarity=0.227  Sum_probs=32.0

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHh--------------------CCC-eEEEEeCC
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKA--------------------KGA-RVVIANRT  413 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~--------------------~g~-~i~v~nR~  413 (420)
                      .++.||+|+|||+|-+|-=++..|..                    .|+ +|+++.|.
T Consensus        35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RR   92 (225)
T d1cjca1          35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRR   92 (225)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSS
T ss_pred             ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEc
Confidence            45679999999999999998887776                    588 99999985

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=90.67  E-value=0.16  Score=45.63  Aligned_cols=51  Identities=20%  Similarity=0.291  Sum_probs=41.0

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeE-EEEe
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARV-VIAN  411 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i-~v~n  411 (420)
                      ++|.+.++++.+...       +.+++||+|+|-|.|-+|+.++..|.+.|++| .|.+
T Consensus        16 G~Gv~~~~~~~~~~~-------~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          16 GYGSVYYVEAVMKHE-------NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             HHHHHHHHHHHHHHT-------TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             hHHHHHHHHHHHHhC-------CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence            678777777766432       35789999999999999999999999999965 4544

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=90.53  E-value=0.13  Score=43.43  Aligned_cols=39  Identities=26%  Similarity=0.271  Sum_probs=33.2

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      ++.++||.|| ||+|.+++.-++.+|++|+.+.|+++|.+
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~   70 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHE   70 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHH
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHH
Confidence            3457888875 99999999988999999999999988865

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.97  E-value=0.15  Score=40.83  Aligned_cols=38  Identities=24%  Similarity=0.385  Sum_probs=31.7

Q ss_pred             CCCEEEEEccch-----------HHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691          380 AGKLFVVIGAGG-----------AGKALAYGAKAKGARVVIANRTYENL  417 (420)
Q Consensus       380 ~~k~vlviGaGG-----------aara~~~aL~~~g~~i~v~nR~~~ka  417 (420)
                      ..|+|||||+|+           ++--++.+|.+.|+++.++|-|++..
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TV   54 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATI   54 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCG
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhh
Confidence            358999999986           46667899999999999999887653

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=89.89  E-value=0.12  Score=43.30  Aligned_cols=40  Identities=25%  Similarity=0.280  Sum_probs=33.8

Q ss_pred             CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR  419 (420)
Q Consensus       380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~  419 (420)
                      ++.+|||-|| ||+|.+++.-.+.+|++|+...|+.+|.+.
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~   63 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADY   63 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHH
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHH
Confidence            4567999995 999999998888999998888888887654

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=89.53  E-value=0.16  Score=43.14  Aligned_cols=37  Identities=16%  Similarity=0.126  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ..+.++++.|+|.|..|++++..|..+|++|..++|.
T Consensus        40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~   76 (188)
T d2naca1          40 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRH   76 (188)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSS
T ss_pred             eeccccceeeccccccchhhhhhhhccCceEEEEeec
Confidence            4678999999999999999999999999999999985

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=89.30  E-value=0.35  Score=40.40  Aligned_cols=48  Identities=23%  Similarity=0.323  Sum_probs=39.9

Q ss_pred             HHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeCC
Q 014691          355 VGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       355 ~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR~  413 (420)
                      .|++.-|++.           +.+++||+++|+|.+. +||-++.-|.+.|+.|++++..
T Consensus        22 ~aI~~lL~~y-----------~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~   70 (166)
T d1b0aa1          22 RGIVTLLERY-----------NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF   70 (166)
T ss_dssp             HHHHHHHHHT-----------TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS
T ss_pred             HHHHHHHHHc-----------CcccccceEEEEeccccccHHHHHHHHHhhccccccccc
Confidence            4666666653           2678999999999988 9999999999999999999864

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.05  E-value=0.14  Score=37.55  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=30.9

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      |++.|||+|--||..+.+...+|+++.+++-+.+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            6899999999999999999999999999987643

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.97  E-value=0.37  Score=40.46  Aligned_cols=37  Identities=30%  Similarity=0.336  Sum_probs=33.0

Q ss_pred             cccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeCC
Q 014691          377 SALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       377 ~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR~  413 (420)
                      .+++||+++|||.+. +||-++.-|.+.|+.|++++++
T Consensus        25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            478999999999887 8999999999999999988754

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.66  E-value=0.096  Score=47.77  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=29.7

Q ss_pred             CCEEEEEccchHHHHHHHHHHh--CCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKA--KGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~--~g~~i~v~nR~~  414 (420)
                      ++.|+|||+|.+|.++++.|++  .|.+|+|+.++.
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            4579999999999999999985  478999999864

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.34  E-value=0.48  Score=43.14  Aligned_cols=58  Identities=24%  Similarity=0.294  Sum_probs=40.1

Q ss_pred             HHHHHHHHHhhhccCCCCC-CCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEE-EEe
Q 014691          354 YVGAISAIEDGLRGRLNVS-GGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IAN  411 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~-~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~-v~n  411 (420)
                      ++|.+.+++..+....... -....+++||+|+|-|-|-+|+.++..|.+.|++|+ |.+
T Consensus         8 G~GV~~~~~~~l~~~~~~~~~gl~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1           8 GRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHTCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHHHHHHhcccchhccCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence            6778777776653210000 000136899999999999999999999999999654 443

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.18  E-value=0.24  Score=41.75  Aligned_cols=40  Identities=20%  Similarity=0.196  Sum_probs=33.8

Q ss_pred             cCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ  418 (420)
Q Consensus       379 ~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~  418 (420)
                      .+|.+|||.|+ ||+|.+++.-+..+|++|+...++++|.+
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~   70 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHD   70 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHH
Confidence            35789999995 88999999988899999888888877654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=88.12  E-value=0.25  Score=38.26  Aligned_cols=34  Identities=26%  Similarity=0.221  Sum_probs=27.9

Q ss_pred             CCEEEEEccchHHHHHHHHHHh---CCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKA---KGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~---~g~~i~v~nR~~  414 (420)
                      .|+++|||+|.+|--.+..|..   .|.+|+++.|..
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            4799999999999988876554   477999999864

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.04  E-value=0.23  Score=39.71  Aligned_cols=34  Identities=29%  Similarity=0.287  Sum_probs=28.6

Q ss_pred             CCEEEEEccchHHHHHHHHHH----hCCCeEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAK----AKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~----~~g~~i~v~nR~~  414 (420)
                      .|+++|+|+|.+|--++.+|.    +.|.+|+++.+..
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            579999999999988888884    4688999998753

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=87.79  E-value=0.25  Score=39.13  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=31.9

Q ss_pred             ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      -++||+|+|+|.|-.|--.+..|...+.+|+++-|..
T Consensus        24 ~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          24 FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             GGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             HhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            3689999999999999888888988766999999853

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.56  E-value=0.33  Score=39.33  Aligned_cols=34  Identities=24%  Similarity=0.212  Sum_probs=30.0

Q ss_pred             CCEEEEE--ccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          381 GKLFVVI--GAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       381 ~k~vlvi--GaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ++.++|+  |+|-+|-.++..|+++|++|+++.|..
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            6778887  777799999999999999999999864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.43  E-value=0.31  Score=37.80  Aligned_cols=34  Identities=18%  Similarity=0.119  Sum_probs=28.5

Q ss_pred             CCEEEEEccchHHHHHHHHHHhCCC---eEEEEeCCh
Q 014691          381 GKLFVVIGAGGAGKALAYGAKAKGA---RVVIANRTY  414 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~~g~---~i~v~nR~~  414 (420)
                      .++++|+|+|.+|--.+..|..+|.   +|+++.|..
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            4799999999999999988777653   799998854

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.21  E-value=0.33  Score=38.37  Aligned_cols=37  Identities=24%  Similarity=0.309  Sum_probs=31.3

Q ss_pred             cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      .-++||+|+|+|.|..|--.+..|.+..-+|+++-|.
T Consensus        26 ~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~   62 (126)
T d1fl2a2          26 PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA   62 (126)
T ss_dssp             GGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSS
T ss_pred             hhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecc
Confidence            3478999999999998888888898885599999874

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.75  E-value=0.15  Score=50.63  Aligned_cols=35  Identities=17%  Similarity=0.224  Sum_probs=31.7

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~  413 (420)
                      +++.+|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus        23 L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d   58 (529)
T d1yova1          23 LESAHVCLINATATGTEILKNLVLPGIGSFTIIDGN   58 (529)
T ss_dssp             HHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            456799999999999999999999999 99999864

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.42  E-value=0.17  Score=42.68  Aligned_cols=37  Identities=32%  Similarity=0.311  Sum_probs=29.9

Q ss_pred             CCEEEEEcc-chHHHHHHHHHHhCCC-eEEEEeCChhhh
Q 014691          381 GKLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTYENL  417 (420)
Q Consensus       381 ~k~vlviGa-GGaara~~~aL~~~g~-~i~v~nR~~~ka  417 (420)
                      +++|||.|| ||+|.+++.-++..|+ .|..+.++.++.
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~   69 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKC   69 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHH
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHH
Confidence            478999995 9999999998899999 666667665554

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.04  E-value=0.28  Score=44.73  Aligned_cols=32  Identities=28%  Similarity=0.474  Sum_probs=27.0

Q ss_pred             CEEEEEccchHHHHHHHHHHh----CCCeEEEEeCC
Q 014691          382 KLFVVIGAGGAGKALAYGAKA----KGARVVIANRT  413 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~----~g~~i~v~nR~  413 (420)
                      .-|||||+|.+|.+++..+++    .|++|.|+.+.
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~   57 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA   57 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCC
Confidence            469999999999998888764    68899999864

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=85.03  E-value=4.4  Score=34.67  Aligned_cols=121  Identities=16%  Similarity=0.155  Sum_probs=76.2

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (420)
Q Consensus        26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (420)
                      |.-.+...+.++...-++.+.+.|..++|+-++. +  ...+.++.+.++.+- +++-.=|     -  .+.    +-++
T Consensus        17 iipvlr~~~~~~a~~~~~al~~~Gi~~iEitl~t-p--~a~~~I~~l~~~~p~-~~vGaGT-----V--~~~----~~~~   81 (213)
T d1wbha1          17 VVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRT-E--CAVDAIRAIAKEVPE-AIVGAGT-----V--LNP----QQLA   81 (213)
T ss_dssp             EEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCS-T--THHHHHHHHHHHCTT-SEEEEES-----C--CSH----HHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCC-h--hHHHHHHHHHHHCCC-Ceeeccc-----c--ccH----HHHH
Confidence            4446888999999999998889999999999864 1  223456666655432 3332221     1  122    2456


Q ss_pred             HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEee
Q 014691          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT  175 (420)
Q Consensus       106 ~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~  175 (420)
                      .+.+.|++|+ |-=..++++.+...   +.+...|=..    .||++      +.++.++|++++|+---
T Consensus        82 ~a~~aGa~Fi-vSP~~~~~v~~~a~---~~~i~~iPGv----~TpsE------i~~A~~~G~~~vKlFPA  137 (213)
T d1wbha1          82 EVTEAGAQFA-ISPGLTEPLLKAAT---EGTIPLIPGI----STVSE------LMLGMDYGLKEFKFFPA  137 (213)
T ss_dssp             HHHHHTCSCE-EESSCCHHHHHHHH---HSSSCEEEEE----SSHHH------HHHHHHTTCCEEEETTT
T ss_pred             HHHHCCCcEE-ECCCCCHHHHHHHH---hcCCCccCCc----CCHHH------HHHHHHCCCCEEEeccc
Confidence            7788899987 44455565555443   2355555443    26642      45567899999998543

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.00  E-value=0.73  Score=40.45  Aligned_cols=51  Identities=18%  Similarity=0.128  Sum_probs=38.3

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHH-hCCCeEE-EEe
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAK-AKGARVV-IAN  411 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~-~~g~~i~-v~n  411 (420)
                      ++|.+.+++..+...       +.+++|++++|-|.|-+|+.++..|. +.|++|+ +.+
T Consensus        11 g~Gv~~~~~~~~~~~-------~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd   63 (234)
T d1b26a1          11 GRGVKVCAGLAMDVL-------GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSD   63 (234)
T ss_dssp             HHHHHHHHHHHHHHT-------TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             hHHHHHHHHHHHHHc-------CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeec
Confidence            567777776655421       25789999999999999999999996 5698544 443

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.83  E-value=0.3  Score=45.02  Aligned_cols=39  Identities=13%  Similarity=0.095  Sum_probs=33.7

Q ss_pred             CCEEEEEccchHHHHHHHHHHh-CCC-eEEEEeCChhhhhc
Q 014691          381 GKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYENLQR  419 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL~~-~g~-~i~v~nR~~~ka~~  419 (420)
                      .+++.|||+|.-|+.-+.+|.. ... +|.|+||+.++++.
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~  165 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKK  165 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHH
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHH
Confidence            4689999999999999988865 456 99999999998865

>d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Bacillus anthracis [TaxId: 1392]

Probab=84.76  E-value=4.8  Score=35.75  Aligned_cols=158  Identities=17%  Similarity=0.225  Sum_probs=93.3

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCC----CCCchhHHHHHH-------hhCCCcEEEEeccCCCCCCCCCCHHHHHH
Q 014691           34 SVDKMVVDMGKANASGADLVEIRLDGLK----NFNPRENIKTLI-------KESPVPTLFTYRPIWEGGQYDGDENERVD  102 (420)
Q Consensus        34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~l~~l~-------~~~~~PiI~T~R~~~eGG~~~~~~~~~~~  102 (420)
                      +.++++++++.....|||+|++=.=.-.    ..++.++++++.       +..+  +++.+-|.            +.+
T Consensus        40 ~~~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~is~~eE~~rl~p~i~~~~~~~~--~~iSIDT~------------~~~  105 (273)
T d1tx2a_          40 EVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVK--LPISIDTY------------KAE  105 (273)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSC--SCEEEECS------------CHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEeeceeccccccccCHHHHHHhhchhHHhhhccce--EEEehHHh------------hHH
Confidence            5677888899888999999998665432    222333443332       2233  33466652            346


Q ss_pred             HHHHHHHhCCcEEE-EEcc-cccchhHHHhhcCCCCcEEEEEcccCCCCCCH--------HHHHHHHHHHHHcCCCEEEE
Q 014691          103 VLRLAMELGADYID-VELQ-VAREFNDSIRGKKPEKCKVIVSSHNYQYTPSV--------EDLSNLVARIQASGADIVKF  172 (420)
Q Consensus       103 ll~~~~~~~~d~iD-iEl~-~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~--------~el~~~~~~~~~~gaDivKi  172 (420)
                      ..+.|++.|+++|- |--. .+++....+..   .+..+|+. |. .++|..        ..+.+.++.+.+.|.+--+|
T Consensus       106 Va~~al~~G~~iINDvsg~~~D~~m~~~~~~---~~~~~vlm-H~-~~~~~~~~~~~~~~~~~~~~i~~~~~~GI~~~~I  180 (273)
T d1tx2a_         106 VAKQAIEAGAHIINDIWGAKAEPKIAEVAAH---YDVPIILM-HN-RDNMNYRNLMADMIADLYDSIKIAKDAGVRDENI  180 (273)
T ss_dssp             HHHHHHHHTCCEEEETTTTSSCTHHHHHHHH---HTCCEEEE-CC-CSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred             HHHHHHHcCCeEEeccccccchhHHHHHHHh---hccccccc-cc-ccccccccccchhhhhHHHHHHHHHHcCCChheE
Confidence            88899999998773 4322 23333333322   34455554 53 344432        22455677788888766678


Q ss_pred             Eeec-----CCHHHHHHHHHHhcc---CCCCEEEEecCCcchhhhhh
Q 014691          173 ATTA-----LDITDVARVFQITVH---SQVPIIGLVMGERGLISRIL  211 (420)
Q Consensus       173 a~~~-----~s~~D~~~ll~~~~~---~~~p~I~~~MG~~G~~SRi~  211 (420)
                      ..=|     ++.++++.|++-+..   .+.| |.++-....-+..++
T Consensus       181 iiDPGiGFgK~~~~n~~ll~~i~~l~~~g~P-ilvG~SRKsfig~~~  226 (273)
T d1tx2a_         181 ILDPGIGFAKTPEQNLEAMRNLEQLNVLGYP-VLLGTSRKSFIGHVL  226 (273)
T ss_dssp             EEECCTTSSCCHHHHHHHHHTGGGGGGGCSC-BEEECTTCHHHHHHH
T ss_pred             ecCccCCccchHHHHHHHHhhhcccccCCCc-EEEEehHHHHHHHHh
Confidence            8765     789999999876543   3677 445555554444443

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.61  E-value=5.2  Score=33.75  Aligned_cols=153  Identities=13%  Similarity=0.061  Sum_probs=93.3

Q ss_pred             cEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691           24 TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDV  103 (420)
Q Consensus        24 ~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l  103 (420)
                      .+|||.+-..+.+++++-+++. ...+|+||+=.+++..... +.++.+.+..+.|++.-... .     +... .-...
T Consensus         3 ~ki~lAlD~~~~~~a~~l~~~~-~~~v~~iKig~~l~~~~G~-~~v~~l~~~~~~~i~~D~K~-~-----DIg~-t~~~~   73 (212)
T d1km4a_           3 NRLILAMDLMNRDDALRVTGEV-REYIDTVKIGYPLVLSEGM-DIIAEFRKRFGCRIIADFAV-A-----DIPE-TNEKI   73 (212)
T ss_dssp             GGEEEEECCSSHHHHHHHHHHH-TTTCSEEEEEHHHHHHHCT-HHHHHHHHHHCCEEEEEEEE-C-----SCHH-HHHHH
T ss_pred             CCeEEEecCCCHHHHHHHHHHh-CCCCcEEEECHHHHHhcCH-HHHHHHHHhcccceehhhhh-h-----cccc-HHHHh
Confidence            3589999999999999988875 5569999999988764322 35666766667887765443 1     2222 11234


Q ss_pred             HHHHHHhCCcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCH-----HHHHHHHHHHHHcCCCEEEEEeecC
Q 014691          104 LRLAMELGADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSV-----EDLSNLVARIQASGADIVKFATTAL  177 (420)
Q Consensus       104 l~~~~~~~~d~iDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tP~~-----~el~~~~~~~~~~gaDivKia~~~~  177 (420)
                      .+.+.++|+|++.|=-....+.++.... .+..+.++++-.+..  .++.     ....+..+.....|.+  -+++...
T Consensus        74 ~~~~~~~gad~~TVh~~~g~~~i~~~~~~a~~~~~~~~~l~~~s--~~~~~~~~~~~~~~~~~~~~~~g~~--g~v~~~~  149 (212)
T d1km4a_          74 CRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMS--HPGAEMFIQGAADEIARMGVDLGVK--NYVGPST  149 (212)
T ss_dssp             HHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEECSCS--SGGGGTTHHHHHHHHHHHHHHHTCC--EEECCTT
T ss_pred             HhhhccccccEEEEeccCChHHHHHHHHHHHhcCCccccchhhc--chhhhhhhhhHHHHHHHHHHHhCCc--ccccccc
Confidence            5566788999999987776666555542 222344554422211  1111     1123333333455544  5577778


Q ss_pred             CHHHHHHHHHHh
Q 014691          178 DITDVARVFQIT  189 (420)
Q Consensus       178 s~~D~~~ll~~~  189 (420)
                      ++++..++-+..
T Consensus       150 ~~~~i~~ir~~~  161 (212)
T d1km4a_         150 RPERLSRLREII  161 (212)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHhhhhhcc
Confidence            888876665544

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=84.59  E-value=0.4  Score=36.15  Aligned_cols=35  Identities=23%  Similarity=0.168  Sum_probs=30.3

Q ss_pred             CCCEEEEEccchHHHHH-HHHHHhCCCeEEEEeCCh
Q 014691          380 AGKLFVVIGAGGAGKAL-AYGAKAKGARVVIANRTY  414 (420)
Q Consensus       380 ~~k~vlviGaGGaara~-~~aL~~~g~~i~v~nR~~  414 (420)
                      +.|++.+||-||+|-++ |..|.++|++|+-.++..
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            46899999999999665 788999999999999863

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=84.22  E-value=0.45  Score=41.82  Aligned_cols=33  Identities=30%  Similarity=0.324  Sum_probs=29.5

Q ss_pred             CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (420)
Q Consensus       382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~  414 (420)
                      ..++|||+|.+|..++..++++|.+++++.+..
T Consensus        43 yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          43 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            359999999999999999999999999998753

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=84.15  E-value=2.5  Score=35.04  Aligned_cols=108  Identities=13%  Similarity=0.054  Sum_probs=67.2

Q ss_pred             CcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHH
Q 014691           23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERV  101 (420)
Q Consensus        23 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~  101 (420)
                      .|++||.+-..|++++++-+++. ..++|++++-++++..... +.++.+++.. ..++++..-.       ......  
T Consensus         1 ~p~l~vAlD~~~~~~~~~~~~~~-~~~vdiikig~~~~~~~G~-~~i~~l~~~~~~~~i~~d~k~-------~d~~~~--   69 (213)
T d1q6oa_           1 LPMLQVALDNQTMDSAYETTRLI-AEEVDIIEVGTILCVGEGV-RAVRDLKALYPHKIVLADAKI-------ADAGKI--   69 (213)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHH-GGGCSEEEECHHHHHHHCT-HHHHHHHHHCTTSEEEEEEEE-------CSCHHH--
T ss_pred             CCcEEEEecCCCHHHHHHHHHhc-CCCccEEEeCeeccccCCH-HHHHHHHHhcccccceeEEee-------ccchHH--
Confidence            48999999999999999988875 5579999999887643332 3566666654 4566555332       112222  


Q ss_pred             HHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEE
Q 014691          102 DVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVS  142 (420)
Q Consensus       102 ~ll~~~~~~~~d~iDiEl~~~~~~~~~l~-~~~~~~~kiI~S  142 (420)
                       ..+.+.+.|+|++.+=.....+..+... ..+..+.++.+.
T Consensus        70 -~~~~~~~~gad~vtvh~~~g~~~~~~~~~~~~~~~~~~~v~  110 (213)
T d1q6oa_          70 -LSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIE  110 (213)
T ss_dssp             -HHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             -HHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHcCCceecc
Confidence             2234556789999886655544444333 222334454443

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.98  E-value=1.1  Score=39.31  Aligned_cols=53  Identities=26%  Similarity=0.275  Sum_probs=38.8

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHh-CCCe-EEEEeC
Q 014691          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA-KGAR-VVIANR  412 (420)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~-~g~~-i~v~nR  412 (420)
                      ++|.+.+++..+....      ..+++||+|+|-|-|-+|..++..|.+ .|++ |.+.+.
T Consensus        11 g~Gv~~~~~~~~~~~g------~~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1          11 ARGASYTIREAAKVLG------WDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             HHHHHHHHHHHHHHTT------CSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             hHHHHHHHHHHHHHhC------CCCcCCCEEEEECCCHHHHHHHHHHHHhcCcceeecccc
Confidence            6777777766654311      135899999999999999999998875 6884 555543

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=83.74  E-value=0.41  Score=44.58  Aligned_cols=39  Identities=18%  Similarity=0.233  Sum_probs=33.5

Q ss_pred             CCEEEEEccchHHHHHHHHH-HhCCC-eEEEEeCChhhhhc
Q 014691          381 GKLFVVIGAGGAGKALAYGA-KAKGA-RVVIANRTYENLQR  419 (420)
Q Consensus       381 ~k~vlviGaGGaara~~~aL-~~~g~-~i~v~nR~~~ka~~  419 (420)
                      .+++.|||+|.-|+.-+.++ ..++. +|+|++|+++++++
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~  168 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAK  168 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHH
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHH
Confidence            47899999999999988877 45678 99999999988764

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=83.64  E-value=2.9  Score=38.31  Aligned_cols=90  Identities=22%  Similarity=0.265  Sum_probs=56.3

Q ss_pred             EeecCCCHHHHHHH----HHhhhhcCCCEEEEEec--C----------------CCCC-Cc-----hhHHHHHHhhCCCc
Q 014691           28 VPIMGESVDKMVVD----MGKANASGADLVEIRLD--G----------------LKNF-NP-----RENIKTLIKESPVP   79 (420)
Q Consensus        28 v~l~~~~~~e~~~~----~~~~~~~~~D~vElRlD--~----------------l~~~-~~-----~~~l~~l~~~~~~P   79 (420)
                      ..++...+++++++    ++++.+.|.|.||+-.=  |                +... ++     .+.++.+++..+.|
T Consensus       131 ~~lt~~eI~~ii~~f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~  210 (337)
T d1z41a1         131 VEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGP  210 (337)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhccc
Confidence            34666666555544    33456789999999763  2                2211 11     12344555556788


Q ss_pred             EEEEeccC--CCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcc
Q 014691           80 TLFTYRPI--WEGGQYDGDENERVDVLRLAMELGADYIDVELQ  120 (420)
Q Consensus        80 iI~T~R~~--~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~  120 (420)
                      +++.++..  .+||   .+.++..++.+...+.|+|++++-..
T Consensus       211 ~~vr~~~~~~~~~g---~~~~~~~~~~~~l~~~g~d~~~~s~g  250 (337)
T d1z41a1         211 LFVRVSASDYTDKG---LDIADHIGFAKWMKEQGVDLIDCSSG  250 (337)
T ss_dssp             EEEEEECCCCSTTS---CCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ceEEecccccccCc---cchhhhHHHHHHHHHcCCcccccccc
Confidence            88766633  2223   35677888888888999999998654

>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=83.48  E-value=8  Score=35.16  Aligned_cols=202  Identities=9%  Similarity=-0.055  Sum_probs=116.9

Q ss_pred             HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccc-c------cchhHHH----hh-cCCC
Q 014691           68 NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQV-A------REFNDSI----RG-KKPE  135 (420)
Q Consensus        68 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~-~------~~~~~~l----~~-~~~~  135 (420)
                      -++.++...+.|++.|+=.+.=    -.+.++..++....+.-|+|+|-=|-.. +      ++.++.+    .. .++.
T Consensus         7 G~R~~lgv~~RPLlgtiiKP~~----Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~~~~~p~~eRv~~~~~av~~a~~eT   82 (325)
T d1wdda1           7 VERDKLNKYGRPLLGCTIKPKL----GLSAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKSQAET   82 (325)
T ss_dssp             HHHHHHTCCSSCEEECBCSSSS----CCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHH
T ss_pred             ehHHhhCCCCCCeEEeecCCCC----CCCHHHHHHHHHHHHccCCceeeCCcccCCCCCcchHHHHHHHHHHHHHHHHhh
Confidence            3555555568999999775533    2477889999888888889988543222 1      1111111    11 1223


Q ss_pred             CcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccC---------------CCCEEEEe
Q 014691          136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHS---------------QVPIIGLV  200 (420)
Q Consensus       136 ~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~---------------~~p~I~~~  200 (420)
                      +.+.+.+.+..  .++.+|+.+..+.+.+.|++.+=+.+......=+..|-+.....               ..|--.|+
T Consensus        83 G~~k~y~~nit--~~~~~em~~ra~~a~e~G~~~~mi~~~~~G~~a~~~l~~~~~~~~l~ih~Hra~~ga~tr~~~~Gis  160 (325)
T d1wdda1          83 GEIKGHYLNAT--AGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMH  160 (325)
T ss_dssp             SSCCEEEEECC--CSSHHHHHHHHHHHHHHTCSEEEEEHHHHCHHHHHHHHHHHHHHTCEEEEECTTHHHHHSCSSSEEC
T ss_pred             CCceeEEeccC--CCCHHHHHHHHHHHHHcCCCEEEEecccccHHHHHHHHHhhhhcCceeecccccccccccCCCCCcc
Confidence            44455555543  23568899999999999999999888877665554444332111               23444577


Q ss_pred             cCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhcc-----------------ccCCCceEEeeeccCc
Q 014691          201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFR-----------------QMGPDTKVFGIIGKPV  263 (420)
Q Consensus       201 MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~-----------------~~~~~~~~~~v~G~pv  263 (420)
                      +.-++++.|+++-   ..+.|.+....  - +  .+-++..++.+..                 ........+-+.+.  
T Consensus       161 ~~vl~kl~RLaGa---D~ih~~~~~Gk--~-~--~~~~~~~~~~~~l~~~~~~~d~~~~~~~~q~~~~~k~~~Pv~sG--  230 (325)
T d1wdda1         161 FRVLAKALRMSGG---DHIHAGTVVGK--L-E--GEREMTLGFVDLLRDDFIEKDRARGIFFTQDWVSMPGVIPVASG--  230 (325)
T ss_dssp             HHHHHHHHHHHCC---SEEECCCSSSS--B-C--CCHHHHHHHHHHHHCSEECCBGGGTBCSCEECTTCCCCEEEEES--
T ss_pred             HHHHHHHHHHcCC---CccccCccccC--c-C--CCHHHHHHHHHHHHhhhcccccccCccccCcccCCCCeeeecCC--
Confidence            7777888898863   33444443321  1 1  2233333333211                 01112234555554  


Q ss_pred             cccccHHHHHHHHHHcCCCceeec
Q 014691          264 GHSKSPILYNEAFKSVGFNGVFVH  287 (420)
Q Consensus       264 ~hS~SP~ihn~~f~~~gl~~~y~~  287 (420)
                        ..+|..-...++.+|-|..+..
T Consensus       231 --G~~~g~vp~~~~~~G~D~il~~  252 (325)
T d1wdda1         231 --GIHVWHMPALTEIFGDDSVLQF  252 (325)
T ss_dssp             --SCCGGGHHHHHHHHCSSSEEEC
T ss_pred             --CCCHhHHHHHHHhcCCcEEEEc
Confidence              3456666677888998887764

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=82.98  E-value=8.7  Score=32.68  Aligned_cols=121  Identities=17%  Similarity=0.181  Sum_probs=75.4

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (420)
Q Consensus        25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (420)
                      +|...|...+.+++..-++.+.+.|..++|+-+..   .+..+.++.+.++.+- +++-.=|     .  .+.    +-+
T Consensus        15 ~iipvlr~~~~~~~~~~~~al~~~Gi~~iEitl~~---~~a~~~I~~l~~~~p~-~~vGaGT-----V--~~~----~~~   79 (212)
T d1vhca_          15 KIVPVIALDNADDILPLADTLAKNGLSVAEITFRS---EAAADAIRLLRANRPD-FLIAAGT-----V--LTA----EQV   79 (212)
T ss_dssp             CEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTS---TTHHHHHHHHHHHCTT-CEEEEES-----C--CSH----HHH
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCC---hhHHHHHHHHHhcCCC-ceEeeee-----c--ccH----HHH
Confidence            45567888899999988888888999999999873   2223456666555432 4433222     1  122    245


Q ss_pred             HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Q 014691          105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT  174 (420)
Q Consensus       105 ~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~  174 (420)
                      +.+.+.|++|+ |-=..++++.+...   +.+...|=..    .||+  |    +.++.++|+|++|+--
T Consensus        80 ~~a~~aGa~Fi-vSP~~~~~v~~~a~---~~~i~~iPGv----~Tps--E----i~~A~~~G~~~vK~FP  135 (212)
T d1vhca_          80 VLAKSSGADFV-VTPGLNPKIVKLCQ---DLNFPITPGV----NNPM--A----IEIALEMGISAVKFFP  135 (212)
T ss_dssp             HHHHHHTCSEE-ECSSCCHHHHHHHH---HTTCCEECEE----CSHH--H----HHHHHHTTCCEEEETT
T ss_pred             HHHHhhCCcEE-ECCCCCHHHHHHHH---hcCCCccCCc----CCHH--H----HHHHHHCCCCEEEEcc
Confidence            67788899987 43345555554443   2344444332    2554  2    5566678999999854

>d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Hypothetical protein Lmo2234
species: Listeria monocytogenes [TaxId: 1639]

Probab=82.79  E-value=12  Score=32.00  Aligned_cols=82  Identities=20%  Similarity=0.282  Sum_probs=45.5

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecCCCC----CCchhHHHHHHhhCCCcEE-EEeccCCCCCCCCCCHHH----HHHH
Q 014691           33 ESVDKMVVDMGKANASGADLVEIRLDGLKN----FNPRENIKTLIKESPVPTL-FTYRPIWEGGQYDGDENE----RVDV  103 (420)
Q Consensus        33 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~----~~~~~~l~~l~~~~~~PiI-~T~R~~~eGG~~~~~~~~----~~~l  103 (420)
                      -+++|.++.+   .+.|.|.||++.+.+.+    ....+.++++++...+++. +++-...  ..-+...+.    -.+.
T Consensus        15 ~~lee~l~~a---a~~Gfd~iEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~--~~~~~~~~~~~~~~~~~   89 (275)
T d2g0wa1          15 VSFPKRVKVA---AENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVTEVEYITQW--GTAEDRTAEQQKKEQTT   89 (275)
T ss_dssp             SCHHHHHHHH---HHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEEEEEECBCCC--SSTTTCCHHHHHHHHHH
T ss_pred             CCHHHHHHHH---HHhCCCEEEEccccccccccCcCCHHHHHHHHHHcCCceEEEeecccc--CCCchhHHHHHHHHHHH
Confidence            4666666544   46799999999865431    1223567777777888764 3432111  100111111    2245


Q ss_pred             HHHHHHhCCcEEEEEc
Q 014691          104 LRLAMELGADYIDVEL  119 (420)
Q Consensus       104 l~~~~~~~~d~iDiEl  119 (420)
                      ++.|..+|+.+|-+..
T Consensus        90 i~~A~~lG~~~v~~~~  105 (275)
T d2g0wa1          90 FHMARLFGVKHINCGL  105 (275)
T ss_dssp             HHHHHHHTCCEEEECC
T ss_pred             HHHHHHhCCceEecCC
Confidence            6666667777776544

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.72  E-value=1.7  Score=39.79  Aligned_cols=94  Identities=18%  Similarity=0.156  Sum_probs=55.1

Q ss_pred             EeecCCCHHHHHHH----HHhhhhcCCCEEEEEecC--C-----C---CC---------Cc-----hhHHHHHHhhCCCc
Q 014691           28 VPIMGESVDKMVVD----MGKANASGADLVEIRLDG--L-----K---NF---------NP-----RENIKTLIKESPVP   79 (420)
Q Consensus        28 v~l~~~~~~e~~~~----~~~~~~~~~D~vElRlD~--l-----~---~~---------~~-----~~~l~~l~~~~~~P   79 (420)
                      -.++...+++++++    ++++.+.|.|.||+-.-.  |     .   +.         ++     .+.++.+++....+
T Consensus       129 ~~lt~~eI~~ii~~f~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d  208 (330)
T d1ps9a1         129 HELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGND  208 (330)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             hhcChhHHHHHHHHHHHHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCC
Confidence            34555566555443    334567899999997763  1     1   11         11     12344555555445


Q ss_pred             EEEEeccCCCCC-CCCCCHHHHHHHHHHHHHhCCcEEEEEccc
Q 014691           80 TLFTYRPIWEGG-QYDGDENERVDVLRLAMELGADYIDVELQV  121 (420)
Q Consensus        80 iI~T~R~~~eGG-~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~  121 (420)
                      .++.+|-..+.. ....+.++-.++.+...+.|+|++++-...
T Consensus       209 ~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~  251 (330)
T d1ps9a1         209 FIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGW  251 (330)
T ss_dssp             SEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECB
T ss_pred             ceeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhccccc
Confidence            555666442221 111256778888888888899999986643

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=82.25  E-value=0.57  Score=39.26  Aligned_cols=36  Identities=19%  Similarity=0.181  Sum_probs=27.9

Q ss_pred             CCCEEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691          380 AGKLFVVI--GAGGAGKALAYGAKAKGARVVIANRTYE  415 (420)
Q Consensus       380 ~~k~vlvi--GaGGaara~~~aL~~~g~~i~v~nR~~~  415 (420)
                      .|.+++|+  |+||+|.+++.-++.+|+++..+-|+.+
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~   65 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRP   65 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCT
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEeccc
Confidence            46789998  5688999999888889997666555543

>d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.81  E-value=4  Score=36.21  Aligned_cols=162  Identities=18%  Similarity=0.230  Sum_probs=91.9

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecCCC----CCCchhHHHHHH------hhCCCcEEEEeccCCCCCCCCCCHHHHHH
Q 014691           33 ESVDKMVVDMGKANASGADLVEIRLDGLK----NFNPRENIKTLI------KESPVPTLFTYRPIWEGGQYDGDENERVD  102 (420)
Q Consensus        33 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~l~~l~------~~~~~PiI~T~R~~~eGG~~~~~~~~~~~  102 (420)
                      .+.+++++.+++....|||+|.+=-=.-.    ..++.+++.++.      +....+  +.+-|            .|.+
T Consensus        22 ~~~~~a~~~a~~~~~~GAdiIDIGgeSTrPga~~is~~eE~~Rl~p~i~~~~~~~~~--iSIDT------------~~~~   87 (270)
T d1eyea_          22 LDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGIT--VSIDT------------MRAD   87 (270)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHTTCC--EEEEC------------SCHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCEeeechhhcccccceeeeeccccee--echHh------------hhHH
Confidence            37889999999999999999988544322    112223333332      122322  35543            2346


Q ss_pred             HHHHHHHhCCcEEE-EEcccccchhHHHhhcCCCCcEEEEEcccC--CCC---C-C----H----HHHHHHHHHHHHcCC
Q 014691          103 VLRLAMELGADYID-VELQVAREFNDSIRGKKPEKCKVIVSSHNY--QYT---P-S----V----EDLSNLVARIQASGA  167 (420)
Q Consensus       103 ll~~~~~~~~d~iD-iEl~~~~~~~~~l~~~~~~~~kiI~S~H~f--~~t---P-~----~----~el~~~~~~~~~~ga  167 (420)
                      +.+.|++.|+++|- |--...++.+..+...  .+..+|+.|+.-  ..+   + .    .    .++.+.++.+.+.|.
T Consensus        88 Va~~al~~Ga~iINDvsg~~~d~~m~~~~a~--~~~~~vlmh~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Gi  165 (270)
T d1eyea_          88 VARAALQNGAQMVNDVSGGRADPAMGPLLAE--ADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGV  165 (270)
T ss_dssp             HHHHHHHTTCCEEEETTTTSSCTTHHHHHHH--HTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCeEEEeccccccchhHHhhhhh--cccceeeeeccccccccccccccccchhhhhhhHHHHHHHHHHhccc
Confidence            88899999999874 5433333333334432  356677765421  111   1 1    1    123445566667776


Q ss_pred             CEEEEEeec-----CCHHHHHHHHHHhcc---CCCCEEEEecCCcchhhhhh
Q 014691          168 DIVKFATTA-----LDITDVARVFQITVH---SQVPIIGLVMGERGLISRIL  211 (420)
Q Consensus       168 DivKia~~~-----~s~~D~~~ll~~~~~---~~~p~I~~~MG~~G~~SRi~  211 (420)
                      ..=+|..=|     ++.++++.+++-+..   .+.| |.++......+..++
T Consensus       166 ~~~~IilDPGiGFgKt~~~n~~lL~~l~~~~~~g~P-iLvG~SRKsfig~~~  216 (270)
T d1eyea_         166 DPARLVLDPGLGFAKTAQHNWAILHALPELVATGIP-VLVGASRKRFLGALL  216 (270)
T ss_dssp             CGGGEEEECCTTSSCCHHHHHHHHHTHHHHHTTSSC-BEECCTTCHHHHHHT
T ss_pred             cceEEEEccccccCcccchHHHHHHHHHhhccCCCc-eEEeehhhHHHHHHh
Confidence            555577655     789999998876433   4677 456666666665554

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.62  E-value=0.7  Score=36.70  Aligned_cols=35  Identities=29%  Similarity=0.356  Sum_probs=29.7

Q ss_pred             cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (420)
Q Consensus       379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~  413 (420)
                      ++||+|+|+|.|-.|---+..|.+.-.+|+++-|.
T Consensus        32 frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~   66 (130)
T d1vdca2          32 FRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR   66 (130)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSS
T ss_pred             hCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEec
Confidence            68999999999998887777787766699999775

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=81.51  E-value=9.4  Score=32.94  Aligned_cols=144  Identities=21%  Similarity=0.125  Sum_probs=85.7

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (420)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~  111 (420)
                      ..|.+|+.+-++++.+.+.-.+=+.-.+.      +..+.+++.+++.+ .|+=.-..|..   +-+.+..-.+.+++.|
T Consensus        32 ~~T~~~i~~lc~~A~~~~~~avcV~p~~v------~~a~~~l~~s~v~v-~tVigFP~G~~---~~~~k~~E~~~Ai~~G  101 (234)
T d1n7ka_          32 RATEEDVRNLVREASDYGFRCAVLTPVYT------VKISGLAEKLGVKL-CSVIGFPLGQA---PLEVKLVEAQTVLEAG  101 (234)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEECHHHH------HHHHHHHHHHTCCE-EEEESTTTCCS---CHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhCCeEEEECcHhH------HHHHHHhhcCCCce-EEEEecCCCCC---cHHHHHHHHHHHHHcC
Confidence            34577777777777776655444332211      23444554455554 45544444443   4577888888999999


Q ss_pred             CcEEEEEccccc--c----hhHHHh---hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEee----cCC
Q 014691          112 ADYIDVELQVAR--E----FNDSIR---GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT----ALD  178 (420)
Q Consensus       112 ~d~iDiEl~~~~--~----~~~~l~---~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~----~~s  178 (420)
                      +|=||+=++...  +    .+.++.   .....-.|||+--...    +.+++....+-+.+.|||++|--+-    .-+
T Consensus       102 AdEID~Vin~~~~~~~~~~ev~~~~~~~~~~g~~lKVIlEt~~L----~~~~i~~a~~~a~~aGadFVKTSTG~~~~gat  177 (234)
T d1n7ka_         102 ATELDVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLW----DDKTLSLLVDSSRRAGADIVKTSTGVYTKGGD  177 (234)
T ss_dssp             CCEEEECCCGGGCHHHHHHHHHHHHHHHHHTTCEEEEECCGGGS----CHHHHHHHHHHHHHTTCSEEESCCSSSCCCCS
T ss_pred             CCeEEEEechhhhhhhhHHHHHHHHHHHhccCceEEEEEecccc----chHHHHHHHHHHHHhhhhheeecccccCCCCC
Confidence            999998554321  1    111222   1223457888764322    5677888888888899999996432    234


Q ss_pred             HHHHHHHHHHh
Q 014691          179 ITDVARVFQIT  189 (420)
Q Consensus       179 ~~D~~~ll~~~  189 (420)
                      +.++..+++..
T Consensus       178 ~~~~~~l~~~~  188 (234)
T d1n7ka_         178 PVTVFRLASLA  188 (234)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            66666666553

>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Neisseria meningitidis [TaxId: 487]

Probab=80.25  E-value=3.3  Score=36.63  Aligned_cols=176  Identities=15%  Similarity=0.224  Sum_probs=100.9

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCC----------CCCch---hHHHHHHhhCCCcEEEEeccCC
Q 014691           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLK----------NFNPR---ENIKTLIKESPVPTLFTYRPIW   88 (420)
Q Consensus        22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~----------~~~~~---~~l~~l~~~~~~PiI~T~R~~~   88 (420)
                      +.+..|  ++.-|...+.    .+.+.|+|++=.= |.+.          +....   ...+.++|..+.++++.-=.- 
T Consensus        14 g~ki~~--lTayd~~~A~----~ae~agiDiilVG-DSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf-   85 (260)
T d1o66a_          14 GEKIAM--LTAYESSFAA----LMDDAGVEMLLVG-DSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPF-   85 (260)
T ss_dssp             TCCEEE--EECCSHHHHH----HHHHTTCCEEEEC-TTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCT-
T ss_pred             CCcEEE--EeCCCHHHHH----HHHHcCCCEEEEc-CCchheecCCCCccccchhhhhhhhHHHHccCcceeeecchhh-
Confidence            356777  5555544332    2235689998553 4421          11111   234456666666655432211 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccc-ccchhHHHhhcCCCCcEEEEEc-------cc------CCCCCCHHH
Q 014691           89 EGGQYDGDENERVDVLRLAMELGADYIDVELQV-AREFNDSIRGKKPEKCKVIVSS-------HN------YQYTPSVED  154 (420)
Q Consensus        89 eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~-~~~~~~~l~~~~~~~~kiI~S~-------H~------f~~tP~~~e  154 (420)
                        |.+..++++..+--....+.|+|.|-+|-.. ..+.++.|..   .++.|+...       +.      ..+|.+..+
T Consensus        86 --~sy~~~~~~~~~a~~~~~~~gadavk~eg~~~~~~~i~~l~~---~gIPV~gHiGl~Pq~~~~~gG~r~~Gk~~e~~~  160 (260)
T d1o66a_          86 --GAYQQSKEQAFAAAAELMAAGAHMVKLEGGVWMAETTEFLQM---RGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQA  160 (260)
T ss_dssp             --TSSSSCHHHHHHHHHHHHHTTCSEEEEECSGGGHHHHHHHHH---TTCCEEEEEESCGGGTTC-----------CHHH
T ss_pred             --hhhcchhHHHHHHHHHHHHhhhhhccccchhhhhHHHHHHHH---cCCeeEeecccccchheecCcceeccccchhHH
Confidence              3455677777776667778899999999764 2345555543   467777532       11      112333344


Q ss_pred             HHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEEecCCc--chhhhhhccccC
Q 014691          155 LSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGER--GLISRILCAKFG  216 (420)
Q Consensus       155 l~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~~MG~~--G~~SRi~~~~~G  216 (420)
                      +.+....+++.||..+=+=+.|   +++.+.  .++..++|+|.|+-|+.  |++ .++..++|
T Consensus       161 l~~~a~~le~AGa~~ivlE~Vp---~~va~~--It~~~~iptIgIGaG~~cDGQv-Lv~~DllG  218 (260)
T d1o66a_         161 LLNDAKAHDDAGAAVVLMECVL---AELAKK--VTETVSCPTIGIGAGADCDGQV-LVMHDMLG  218 (260)
T ss_dssp             HHHHHHHHHHTTCSEEEEESCC---HHHHHH--HHHHCSSCEEEESSCSCSSEEE-ECHHHHTT
T ss_pred             HHHHHHHHHHhhhhehhhhhcc---HHHHHH--HHhhhcceeeeccCCCCCCeeE-EehHHhhC
Confidence            6666777888998776665554   444332  44566899999998886  554 45555555

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=80.21  E-value=0.57  Score=42.75  Aligned_cols=48  Identities=21%  Similarity=0.309  Sum_probs=35.0

Q ss_pred             HHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHh----CC------C-eEEEEeCC
Q 014691          355 VGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA----KG------A-RVVIANRT  413 (420)
Q Consensus       355 ~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~----~g------~-~i~v~nR~  413 (420)
                      .|++++++-.           +.+++..++++.|||-+|-+++..|..    .|      . +|+++||.
T Consensus        10 AglinAlki~-----------gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~k   68 (298)
T d1gq2a1          10 AGLLAALRIT-----------KNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSK   68 (298)
T ss_dssp             HHHHHHHHHH-----------TSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETT
T ss_pred             HHHHHHHHHh-----------CCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCC
Confidence            4677777643           246778899999999988887776653    23      3 69999974

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Staphylococcus aureus [TaxId: 1280]

Probab=80.15  E-value=1.9  Score=38.34  Aligned_cols=105  Identities=23%  Similarity=0.299  Sum_probs=63.3

Q ss_pred             EeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccc----------ccchhHHHh----hcCCCCcEEEEEcccCCC
Q 014691           83 TYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQV----------AREFNDSIR----GKKPEKCKVIVSSHNYQY  148 (420)
Q Consensus        83 T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~----------~~~~~~~l~----~~~~~~~kiI~S~H~f~~  148 (420)
                      |=-|-.+||.+. +.+.-++..+..++.|+|+|||=-..          .++ ++++.    ..+  ..++++|.=.+  
T Consensus        12 TpDSFsdgg~~~-~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE-~~Rl~pvi~~l~--~~~~~iSIDT~--   85 (264)
T d1ad1a_          12 TPDSFSDGGKFN-NVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEE-LNRVLPVVEAIV--GFDVKISVDTF--   85 (264)
T ss_dssp             CGGGCSSTTTTC-SHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHH-HHHHHHHHHHHT--TSSSEEEEECS--
T ss_pred             CCCCCCCCCcCC-CHHHHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHHH-HHhhhhHhhhhc--ccCcccchhhh--
Confidence            445668999875 44556666777788899999993322          122 12221    122  23567786533  


Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEEecC
Q 014691          149 TPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMG  202 (420)
Q Consensus       149 tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~~MG  202 (420)
                        .    .+..+.+.+.|+||+==+..-....   +++++....+.|+|.|-|+
T Consensus        86 --~----~eVa~~al~~Ga~iINDVs~g~~d~---~~~~~va~~~~~~ilmH~~  130 (264)
T d1ad1a_          86 --R----SEVAEACLKLGVDIINDQWAGLYDH---RMFQVVAKYDAEIVLMHNG  130 (264)
T ss_dssp             --C----HHHHHHHHHTTCCEEEETTTTSSCT---HHHHHHHHTTCEEEEECCC
T ss_pred             --h----HHHHHHHHhcCCcEeeccccccccc---cHHHHHhhcCcceeeeeec
Confidence              2    2346667788999886443222122   3566777788899998764

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=80.13  E-value=9.2  Score=32.47  Aligned_cols=62  Identities=15%  Similarity=0.223  Sum_probs=44.5

Q ss_pred             cEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEe-c-CC-CCCCc-hhHHHHHHhhCCCcEEEEec
Q 014691           24 TLICVPIMGESVDKMVVDMGKANASGADLVEIRL-D-GL-KNFNP-RENIKTLIKESPVPTLFTYR   85 (420)
Q Consensus        24 ~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRl-D-~l-~~~~~-~~~l~~l~~~~~~PiI~T~R   85 (420)
                      -+|+.+|...|..++.++++++.+.|+|.+-+.+ | .| +++.- .+.++.+++..++|+=+++=
T Consensus         2 ~kIspSil~~d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~s~g~~~i~~i~~~t~~~~dvHLM   67 (217)
T d2flia1           2 LKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLM   67 (217)
T ss_dssp             CEEEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEE
T ss_pred             cEEEeehhhcCHHHHHHHHHHHHHcCCCEEEEEcccCcCCCccccCHHHHHHHHhcCCCceEeEEE
Confidence            4789999999999999999998888999998854 4 22 22211 24566666666777666644