Citrus Sinensis ID: 014692

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
MSGELDDDVEAEQTISINEYLNDVEEKELADLVLGGDEGKECTYSKGYMKRQAIFSCLSCAPEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAGCNTNKDKDVLEEIPSAGGSGKLENGICSNGSPREDNAIANTSAESVTGGKGVTGESSKKIFDLVQCMNDGGAHIACLFGDNIVVDGSISLTKPLFLSKNWRATLCRCKKCLSMYEQKRVPYLIDEEDSIAEYERTAKQKREEKLQQQEGAELTFLNKLGHVEKMEILNGIADMKDEFHNFLQSFDPSKAITSDDVHQIFENLAKKRRRE
ccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEccccccccccccHHHHHHHcccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccEEEccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHccccHHHHHHHHHccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcc
ccccccccccccccEcHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccccccEEEEEEEEEcccccEEEEEEEcccEEEcccccccccccEEEcccccccccccccccccccEEEEcccccccccccccccEEEEEEEcccccHHHcccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccHHHHHcccHHHHHHHHHcccccccccccccccHHcccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccEccHHHHHHHHHHHHHHHHcc
msgeldddveAEQTISINEYLNDVEEKELADLvlggdegkectyskgymkRQAIFSClscapegnagvctacsltchdgHEIVELWtkrnfrcdcgnskfgeffcklfpskdvenaensynhnfkgvyctcnrpypdpdveEQVEMIQCCicedwfheehiglepsdeiprddegepvyeDFICKACSAVCSFLSTYPQTIWAAglrrnagcntnkdkdvleeipsaggsgklengicsngsprednaiantsaesvtggkgvtgesSKKIFDLVQCMNDGGAHIACLfgdnivvdgsisltkplflsknWRATLCRCkkclsmyeqkrvpylideedSIAEYERTAKQKREEKLQQQEGAELTFLNKLGHVEKMEILNGIADMKDEFHNflqsfdpskaitsddVHQIFENLAKKRRRE
msgeldddveaeQTISineylndveeKELADLVLGGDEGKECTYSKGYMKRQAIFSCLSCAPEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAGCNTNKDKDVLeeipsaggsgklenGICSNGSPREDNAIAntsaesvtggkgvtgeSSKKIFDLVQCMNDGGAHIACLFGDNIVVDGSISLTKPLFLSKNWRATLCRCKKCLSMYEQkrvpylideedsIAEYERTAKQKREEKLQQQEGAELTFLNKLGHVEKMEILNGIADMKDEFHNFLQSFdpskaitsddvHQIFENLAKKRRRE
MSGELDDDVEAEQTISINEYLNDVEEKELADLVLGGDEGKECTYSKGYMKRQAIFSCLSCAPEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAGCNTNKDKDVLEEIPSAGGSGKLENGICSNGSPREDNAIANTSAESVTGGKGVTGESSKKIFDLVQCMNDGGAHIACLFGDNIVVDGSISLTKPLFLSKNWRATLCRCKKCLSMYEQKRVPYLIDEEDSIAEYERTAkqkreeklqqqeGAELTFLNKLGHVEKMEILNGIADMKDEFHNFLQSFDPSKAITSDDVHQIFENLAKKRRRE
**************ISINEYLNDVEEKELADLVLGGDEGKECTYSKGYMKRQAIFSCLSCAPEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGL*************PVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAGCN********************************************************KIFDLVQCMNDGGAHIACLFGDNIVVDGSISLTKPLFLSKNWRATLCRCKKCLSMYEQKRVPYLIDE**************************LTFLNKLGHVEKMEILNGIADMKDEFHNFLQSFD************************
******************EYLNDVEE*****LVLGGDEGKECTYSKGYMKRQAIFSCLSCAPEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGL***********GEPVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAG**************************************************************************************SISLTKPLFLSKNWRATLCRCKKCLSMYEQKRVPYLIDEED******************************LGHVEKMEILNGIADMKDEFHNFLQSFDPSKAITSDDVHQIF**********
**********AEQTISINEYLNDVEEKELADLVLGGDEGKECTYSKGYMKRQAIFSCLSCAPEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAGCNTNKDKDVLEEIPSAGGSGKLENGICSNGSPREDNAIANTSAESVTGGKGVTGESSKKIFDLVQCMNDGGAHIACLFGDNIVVDGSISLTKPLFLSKNWRATLCRCKKCLSMYEQKRVPYLIDEEDSIAEYERTAKQKREEKLQQQEGAELTFLNKLGHVEKMEILNGIADMKDEFHNFLQSFDPSKAITSDDVHQIFENLAKKRRRE
*************TISINEYLNDVEEKELADLVLGGDEGKECTYSKGYMKRQAIFSCLSCAPEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEI**DDEGEPVYEDFICKACSAVCSFLSTYPQTIWAAG***********************************************************************************************LTKPLFLSKNWRATLCRCKKCLSMYEQKRVPYLIDEEDSIAEYERT************EGAELTFLNKLGHVEKMEILNGIADMKDEFHNFLQSFDPSKAITSDDVHQIFENLAKK****
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MSGELDDDVEAEQTISINEYLNDVEEKELADLVLGGDEGKECTYSKGYMKRQAIFSCLSCAPEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAGCNTNKDKDVLEEIPSAGGSGKLENGICSNGSPREDNAIANTSAESVTGGKGVTGESSKKIFDLVQCMNDGGAHIACLFGDNIVVDGSISLTKPLFLSKNWRATLCRCKKCLSMYEQKRVPYxxxxxxxxxxxxxxxxxxxxxxxxxxxxAELTFLNKLGHVEKMEILNGIADMKDEFHNFLQSFDPSKAITSDDVHQIFENLAKKRRRE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query420 2.2.26 [Sep-21-2011]
Q8BU04425 Putative E3 ubiquitin-pro yes no 0.861 0.851 0.358 1e-61
Q8N806425 Putative E3 ubiquitin-pro yes no 0.842 0.832 0.339 3e-61
Q09329329 Protein mlo2 OS=Schizosac yes no 0.35 0.446 0.394 6e-26
Q54DV0465 Putative E3 ubiquitin-pro yes no 0.411 0.372 0.335 4e-23
>sp|Q8BU04|UBR7_MOUSE Putative E3 ubiquitin-protein ligase UBR7 OS=Mus musculus GN=Ubr7 PE=2 SV=1 Back     alignment and function desciption
 Score =  237 bits (605), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 145/404 (35%), Positives = 216/404 (53%), Gaps = 42/404 (10%)

Query: 33  VLGGDEGKECTYSKGYMKRQAIFSCLSCAPEGN--AGVCTACSLTCHDGHEIVELWTKRN 90
           VLGG + ++C+YS+G + RQA+++C +C PEG   AG+C ACS  CH  H++ EL+TKRN
Sbjct: 37  VLGGSDSEKCSYSQGSVGRQALYACSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRN 96

Query: 91  FRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCC 150
           FRCDCGNSKF    CKLFP K   N+ N YN NF G+YC C RPYPDP+ E   EMIQC 
Sbjct: 97  FRCDCGNSKFKNLECKLFPDKSKVNSCNKYNDNFFGLYCVCKRPYPDPEDEVPDEMIQCV 156

Query: 151 ICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNA 210
           +CEDWFH  H+G  P       + G+  +++ +C+AC   CSFL  Y     AA L   A
Sbjct: 157 VCEDWFHGRHLGAIPP------ESGD--FQEMVCQACMRRCSFLWAY-----AAQL---A 200

Query: 211 GCNTNKDKDVLEEIPSAGGSGKLENGICSNGSPREDNAIANTSAESVTGGKGVTGESSKK 270
               + + D L  +P+A G G  +     NG+P +DN +   + E    G+    E   +
Sbjct: 201 VTRISAEDDGL--LPNATGMGDEDVSKPENGAP-QDNGLKEDAPEH---GRDSVNEVKAE 254

Query: 271 IFDLVQCMNDGGAHIACLF-GDNIVVDGSIS-----LTKPLFLSK--------NWRATLC 316
             +     +   + +  +F  +NI  +   S     L    F+ K        NWR+ LC
Sbjct: 255 QKNEPCSSSSSESDLQTVFKKENIKTEPQSSCRLQELQAKQFVKKDAATYWPLNWRSKLC 314

Query: 317 RCKKCLSMYEQKRVPYLIDEEDSIAEYERTAKQKREEKLQQQEGAELTFLNKLGHVEKME 376
            C+ C+ MY +  V +L DE D++  YE   K    ++   +    +  L+ +  V+++E
Sbjct: 315 TCQDCMKMYGELDVLFLTDECDTVLAYENKGKN---DQATDRRDPLMDTLSSMNRVQQVE 371

Query: 377 ILNGIADMKDEFHNFLQSF-DPSKAITSDDVHQIFENLAKKRRR 419
           ++    D+K E  ++L+ F D    +  +D+ Q FE    K+RR
Sbjct: 372 LICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRR 415
E3 ubiquitin-protein ligase which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q8N806|UBR7_HUMAN Putative E3 ubiquitin-protein ligase UBR7 OS=Homo sapiens GN=UBR7 PE=1 SV=2 Back     alignment and function description
>sp|Q09329|MLO2_SCHPO Protein mlo2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mlo2 PE=2 SV=1 Back     alignment and function description
>sp|Q54DV0|UBR7_DICDI Putative E3 ubiquitin-protein ligase ubr7 OS=Dictyostelium discoideum GN=ubr7 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query420
224072194415 predicted protein [Populus trichocarpa] 0.973 0.985 0.697 1e-170
255537791420 protein binding protein, putative [Ricin 0.990 0.990 0.700 1e-170
224058276425 predicted protein [Populus trichocarpa] 0.992 0.981 0.694 1e-170
225426344416 PREDICTED: putative E3 ubiquitin-protein 0.964 0.973 0.680 1e-162
356539290420 PREDICTED: putative E3 ubiquitin-protein 0.988 0.988 0.627 1e-151
363806676420 uncharacterized protein LOC100817441 [Gl 0.990 0.990 0.629 1e-151
449452234413 PREDICTED: putative E3 ubiquitin-protein 0.964 0.980 0.644 1e-150
357481401417 PHD finger-related protein [Medicago tru 0.919 0.925 0.646 1e-149
388491610417 unknown [Medicago truncatula] 0.919 0.925 0.641 1e-148
226506712412 uncharacterized protein LOC100274433 [Ze 0.942 0.961 0.555 1e-130
>gi|224072194|ref|XP_002303646.1| predicted protein [Populus trichocarpa] gi|118483763|gb|ABK93774.1| unknown [Populus trichocarpa] gi|222841078|gb|EEE78625.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 295/423 (69%), Positives = 338/423 (79%), Gaps = 14/423 (3%)

Query: 1   MSGELDDDVEAEQTISINEYLNDVEEKEL-ADLVLGGDEGKECTYSKGYMKRQAIFSCLS 59
           M G  DD+VE  QT++I+EYL +VE +EL ADLVLGGDEG ECTY+ GYMKRQAIFSCLS
Sbjct: 1   MDGVFDDEVE--QTVTIDEYLKNVEAEELNADLVLGGDEGNECTYNMGYMKRQAIFSCLS 58

Query: 60  CAPEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENS 119
           C P+GNAGVCTACSL+CHDGHEIVELWTKRNFRCDCGNSKFGEF CKLFP KDVENAENS
Sbjct: 59  CTPDGNAGVCTACSLSCHDGHEIVELWTKRNFRCDCGNSKFGEFVCKLFPKKDVENAENS 118

Query: 120 YNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVY 179
           YNHNFKG+YC+C+RPYPDPDVE Q EMIQC +CEDWFH+EH+GLE S+EIPRD+EGEP+Y
Sbjct: 119 YNHNFKGLYCSCDRPYPDPDVEAQEEMIQCIMCEDWFHDEHLGLESSNEIPRDEEGEPLY 178

Query: 180 EDFICKACSAVCSFLSTYPQTIWAAGLRRNAGCNTNKDKDVLEEIPSAGGSGKLENGICS 239
           EDFICK CS VCSFL+ YP+TI AAG + +A  +  KDKDVLE++P+A GSGKLEN IC+
Sbjct: 179 EDFICKTCSTVCSFLTLYPKTIRAAGGKGDATYSNAKDKDVLEDVPTACGSGKLENDICA 238

Query: 240 NGSPREDNAIANTSAESVTGGKGVTGESSKK---IFDLVQCMNDGGAHIACLFGDNIVVD 296
           N S  +DNA A        G     GESS +     +  QC  D      C+ G ++ V 
Sbjct: 239 NNSSEKDNATA--------GKASAVGESSWRNSGSNNSNQCTKDTNLDTTCVLGVDVEVT 290

Query: 297 GSISLTKPLFLSKNWRATLCRCKKCLSMYEQKRVPYLIDEEDSIAEYERTAKQKREEKLQ 356
             +S  KPLFLSKNWR  LCRC+KCL MY QK + YLID ED+I EYE+ AKQKREEKLQ
Sbjct: 291 SPVSEGKPLFLSKNWRDILCRCEKCLDMYNQKHISYLIDREDTIVEYEKMAKQKREEKLQ 350

Query: 357 QQEGAELTFLNKLGHVEKMEILNGIADMKDEFHNFLQSFDPSKAITSDDVHQIFENLAKK 416
           QQEGAEL+F NKLGH+EK+EILNGIAD KDEF +FL+SFD SK ITS DVHQIFENLAKK
Sbjct: 351 QQEGAELSFFNKLGHIEKVEILNGIADFKDEFRSFLESFDKSKTITSSDVHQIFENLAKK 410

Query: 417 RRR 419
           RRR
Sbjct: 411 RRR 413

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255537791|ref|XP_002509962.1| protein binding protein, putative [Ricinus communis] gi|223549861|gb|EEF51349.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224058276|ref|XP_002299475.1| predicted protein [Populus trichocarpa] gi|222846733|gb|EEE84280.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225426344|ref|XP_002270160.1| PREDICTED: putative E3 ubiquitin-protein ligase UBR7 [Vitis vinifera] gi|297742333|emb|CBI34482.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356539290|ref|XP_003538132.1| PREDICTED: putative E3 ubiquitin-protein ligase UBR7 [Glycine max] Back     alignment and taxonomy information
>gi|363806676|ref|NP_001242007.1| uncharacterized protein LOC100817441 [Glycine max] gi|255636057|gb|ACU18373.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449452234|ref|XP_004143865.1| PREDICTED: putative E3 ubiquitin-protein ligase UBR7-like [Cucumis sativus] gi|449501781|ref|XP_004161456.1| PREDICTED: putative E3 ubiquitin-protein ligase UBR7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357481401|ref|XP_003610986.1| PHD finger-related protein [Medicago truncatula] gi|355512321|gb|AES93944.1| PHD finger-related protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|388491610|gb|AFK33871.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|226506712|ref|NP_001142264.1| uncharacterized protein LOC100274433 [Zea mays] gi|194707900|gb|ACF88034.1| unknown [Zea mays] gi|413943922|gb|AFW76571.1| hypothetical protein ZEAMMB73_927257 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query420
TAIR|locus:2138151452 AT4G23860 [Arabidopsis thalian 0.623 0.579 0.595 1.2e-121
UNIPROTKB|F1SD54425 UBR7 "Uncharacterized protein" 0.928 0.917 0.370 4e-67
ZFIN|ZDB-GENE-030131-1535410 ubr7 "ubiquitin protein ligase 0.478 0.490 0.443 6.8e-67
UNIPROTKB|F1PKX8425 UBR7 "Uncharacterized protein" 0.938 0.927 0.359 3.2e-65
UNIPROTKB|A3KMX6425 UBR7 "Uncharacterized protein" 0.935 0.924 0.361 4.1e-65
RGD|1359144425 Ubr7 "ubiquitin protein ligase 0.938 0.927 0.35 4.7e-64
UNIPROTKB|Q8N806425 UBR7 "Putative E3 ubiquitin-pr 0.921 0.910 0.351 5.4e-63
MGI|MGI:1913872425 Ubr7 "ubiquitin protein ligase 0.942 0.931 0.339 6.9e-63
UNIPROTKB|F1NJU8362 UBR7 "Uncharacterized protein" 0.342 0.397 0.525 7.8e-60
FB|FBgn0032635404 CG15141 [Drosophila melanogast 0.440 0.457 0.454 3.8e-56
TAIR|locus:2138151 AT4G23860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 898 (321.2 bits), Expect = 1.2e-121, Sum P(2) = 1.2e-121
 Identities = 165/277 (59%), Positives = 206/277 (74%)

Query:     2 SGELDDDVEAEQTISINEYLNDVEEKELA-DLVLGGDEGKECTYSKGYMKRQAIFSCLSC 60
             SG  +D  EAE TI+INEY+  ++ +ELA DLVLGGDEG ECT+ KGYMKRQAIFSC++C
Sbjct:     3 SGVFED--EAEGTITINEYIERLDAEELAADLVLGGDEGDECTFPKGYMKRQAIFSCITC 60

Query:    61 APEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSY 120
              PEGNAG+CTAC L+CHDGHE++ELWTKRNFRCDCGNSKFG   CKL PSKD+EN+ENSY
Sbjct:    61 TPEGNAGICTACCLSCHDGHELLELWTKRNFRCDCGNSKFGTLACKLLPSKDIENSENSY 120

Query:   121 NHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSD----EIPRDDEGE 176
             NHNFKG+YCTC+RPYPDP+VEEQVEMIQCC+CEDWFHEEH+GL PSD    +IPRD+E E
Sbjct:   121 NHNFKGLYCTCDRPYPDPNVEEQVEMIQCCLCEDWFHEEHLGLTPSDSVGSQIPRDEESE 180

Query:   177 PVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAGCNTNKDKDVLEEIPSAGGSGKLENG 236
             P+YEDFIC+ CS  CSFL+ YP+ +W      + G + N   + +E   +   S   E G
Sbjct:   181 PIYEDFICQNCSPACSFLTLYPENLWVVAKVDSTG-SANACSETIELDKNHMDS---EPG 236

Query:   237 ICSNGSPREDNAIANTSAESVTG---GKGVTGESSKK 270
                NG+  E + +   S E+++    G+   G  ++K
Sbjct:   237 QPENGTDAEKSVVGKCS-ETISDSEPGQPENGTEAEK 272
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IDA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
UNIPROTKB|F1SD54 UBR7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1535 ubr7 "ubiquitin protein ligase E3 component n-recognin 7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PKX8 UBR7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A3KMX6 UBR7 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1359144 Ubr7 "ubiquitin protein ligase E3 component n-recognin 7 (putative)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N806 UBR7 "Putative E3 ubiquitin-protein ligase UBR7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1913872 Ubr7 "ubiquitin protein ligase E3 component n-recognin 7 (putative)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJU8 UBR7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0032635 CG15141 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8N806UBR7_HUMAN6, ., 3, ., 2, ., -0.33980.84280.8329yesno
Q8BU04UBR7_MOUSE6, ., 3, ., 2, ., -0.35890.86190.8517yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_III1164
SubName- Full=Putative uncharacterized protein; (415 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
pfam0220771 pfam02207, zf-UBR, Putative zinc finger in N-recog 4e-17
smart0039671 smart00396, ZnF_UBR1, Putative zinc finger in N-re 7e-09
>gnl|CDD|216929 pfam02207, zf-UBR, Putative zinc finger in N-recognin (UBR box) Back     alignment and domain information 
 Score = 75.1 bits (185), Expect = 4e-17
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 40  KECTYSKGYMKRQAIFSCLSCAPEGNAGVCTAC-SLTCHDGHEIVELWTKRNFRCDCGNS 98
             C Y       Q ++ CL+C+ +    +C  C S++CH GH++VEL++KR   CDCG+ 
Sbjct: 1   SVCGYVFK--SGQPVYRCLTCSLDPTCVICYECFSISCHKGHDVVELFSKRGGCCDCGDP 58

Query: 99  KF--GEFFCKLFP 109
           +    E FCKL  
Sbjct: 59  EAWKKEGFCKLHK 71

This region is found in E3 ubiquitin ligases that recognise N-recognins. Length = 71
>gnl|CDD|197698 smart00396, ZnF_UBR1, Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 420
KOG2752345 consensus Uncharacterized conserved protein, conta 100.0
PF0220771 zf-UBR: Putative zinc finger in N-recognin (UBR bo 99.37
smart0039671 ZnF_UBR1 Putative zinc finger in N-recognin, a rec 99.26
KOG1777625 consensus Putative Zn-finger protein [General func 98.65
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.34
KOG2752345 consensus Uncharacterized conserved protein, conta 98.33
KOG1973274 consensus Chromatin remodeling protein, contains P 98.25
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.23
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 97.91
KOG17761110 consensus Zn-binding protein Push [Signal transduc 97.38
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 97.28
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 97.05
KOG1632345 consensus Uncharacterized PHD Zn-finger protein [G 96.99
PF0064342 zf-B_box: B-box zinc finger; InterPro: IPR000315 Z 87.76
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 87.11
KOG1844 508 consensus PHD Zn-finger proteins [General function 85.03
KOG0825 1134 consensus PHD Zn-finger protein [General function 85.01
cd04714121 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, 82.38
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 82.0
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=6.7e-89  Score=661.24  Aligned_cols=336  Identities=42%  Similarity=0.828  Sum_probs=269.1

Q ss_pred             CCCCcccchhccCcCHHHHHHhHHHHHH-HHhhcCCCCCCCcccccccccccceEeecCCCCCC-CceEeccchhhhcCC
Q 014692            2 SGELDDDVEAEQTISINEYLNDVEEKEL-ADLVLGGDEGKECTYSKGYMKRQAIFSCLSCAPEG-NAGVCTACSLTCHDG   79 (420)
Q Consensus         2 ~~~~~~~~e~e~~vT~~e~le~q~eLE~-a~~~l~~~~~~~Cty~~g~~~rQ~~y~C~tC~~~~-~~giC~~Cs~~CH~~   79 (420)
                      +|-+++ +|.-.+||+.+|++++.+||. |++|||++++++|||++||++||++|+|+||+|.. .+||||+|++.||+|
T Consensus         3 ~~~~e~-ee~~~tiT~~e~vE~~~~lE~~a~~vL~~~~~~~CTy~~Gy~~rQ~l~sClTC~P~~~~agvC~~C~~~CH~~   81 (345)
T KOG2752|consen    3 DGVEET-EEIAPTITLGEYVEQIDELEDEADVVLGTQNPDVCTYAKGYKKRQALFSCLTCTPAPEMAGVCYACSLSCHDG   81 (345)
T ss_pred             cchhcc-hhccccccHHHHHHhHHHHHHHHHhhcCCCCCcccccccCcccccceeEeecccCChhhceeEEEeeeeecCC
Confidence            455665 333459999999999999999 99999999999999999999999999999999974 899999999999999


Q ss_pred             CceeEeecccceeeccCCCCCCccceeecCCCCCCCccCcCCCCCCcceEEeCCCCCCCCcccccceeeccccCceeccc
Q 014692           80 HEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEE  159 (420)
Q Consensus        80 H~l~el~~kr~f~CDCG~~~~~~~~C~l~~~k~~~n~~N~Yn~Nf~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~  159 (420)
                      |+||||||||||||||||++++..+|+|.+.|+.+|++|.|||||+|+||+|++|||||..++.+.|+||.+||||||  
T Consensus        82 H~lveL~tKR~FrCDCg~sk~g~~sc~l~~~~~~~n~~N~YNhNfqG~~C~Cd~~Ypdp~~~~e~~m~QC~iCEDWFH--  159 (345)
T KOG2752|consen   82 HELVELYTKRNFRCDCGNSKFGRCSCNLLEDKDAENSENLYNHNFQGLFCKCDTPYPDPVRTEEGEMLQCVICEDWFH--  159 (345)
T ss_pred             ceeeeccccCCcccccccccccccccccccccccccchhhhhhhhcceeEEecCCCCCccccccceeeeEEeccchhc--
Confidence            999999999999999999999999999999999999999999999999999999999999888999999999999999  


Q ss_pred             CCCCCCCCCCCCCCCCCCccCeeeccCccCCCcccccccccccccccccCCCcCcCCCCCccccCCCCCCCCCCCCCCCC
Q 014692          160 HIGLEPSDEIPRDDEGEPVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAGCNTNKDKDVLEEIPSAGGSGKLENGICS  239 (420)
Q Consensus       160 Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~~fL~~y~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~  239 (420)
                                              |..|++..+|+..|+.....    .......+..     +++.          ..+
T Consensus       160 ------------------------ce~c~~~~~~~~~yp~~~~~----D~e~~k~e~~-----se~~----------a~~  196 (345)
T KOG2752|consen  160 ------------------------CEGCMQAKTFLEDYPEQGKD----DAEEVKPEQN-----SEKC----------AGS  196 (345)
T ss_pred             ------------------------ccccCcccchhhcccccccc----ccccCCcccc-----Cccc----------ccc
Confidence                                    44566666788888732110    0000000000     0000          000


Q ss_pred             CCCCCccccccccccccccCCCCccCCCcccccccccccCCCCCCcccccCCCc----ccCCCCCCCcceecCcchhhhc
Q 014692          240 NGSPREDNAIANTSAESVTGGKGVTGESSKKIFDLVQCMNDGGAHIACLFGDNI----VVDGSISLTKPLFLSKNWRATL  315 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ckl~~~~----~~~~~~~~~~~~fl~~~wR~~L  315 (420)
                      ..          +.-+++         .+.+     + .-+..+++.|++. .+    +++.+ ..++.||.. +||+.|
T Consensus       197 ~c----------~~~i~~---------~~~~-----e-~~~~e~~~~~~~~-~~e~~~k~~~~-~d~~~~~~~-~wR~~L  248 (345)
T KOG2752|consen  197 SC----------SEDIQD---------VPKN-----E-SLNDESESGCKLQ-LLENFRKQLKK-KDGAAFWTN-NWRSKL  248 (345)
T ss_pred             cc----------HHHHHh---------cccC-----C-CCccccccCCcHH-HHHhhHhhccc-CCcccchhh-hHHHhh
Confidence            00          000000         0000     0 0011223456655 22    12222 456677776 999999


Q ss_pred             ccchhhhhhhhhcCCCcccCCCcchHHhhhhhHhhhhhhhhhhhchHHHHHhhCChHHHHHHHHHHHHHHHHHHHhhhhc
Q 014692          316 CRCKKCLSMYEQKRVPYLIDEEDSIAEYERTAKQKREEKLQQQEGAELTFLNKLGHVEKMEILNGIADMKDEFHNFLQSF  395 (420)
Q Consensus       316 C~C~~C~~~y~~~~~~FLldeeDtv~~YE~~~~~~~~~s~~~d~g~~~~aL~sl~RvqaiE~i~~Yn~mKdkL~~fLk~F  395 (420)
                      |+|.+|+.||+.+.|.||||+||||.+||.+++...+.+ +.+.+|+  +|++|+|||||++|.+||+||++|++||++|
T Consensus       249 C~Ce~Cl~mY~d~dv~fLlD~EDti~tyE~k~k~~~~~~-t~e~~~~--~L~~l~r~q~ve~i~eyn~lK~~L~d~L~~f  325 (345)
T KOG2752|consen  249 CTCEDCLEMYEDLDVEFLLDEEDTILTYENKGKIAEENK-TSEDLME--ALDSLNRVQQVELICEYNRLKDELKDYLKRF  325 (345)
T ss_pred             cchHHhhhhhhhhchheeecccchhhhhhhhhhhhhhcc-ccchHHH--HHHhccchhhHHHHHHHHhHHHHHHHHHHHh
Confidence            999999999999999999999999999999999555555 8889999  9999999999999999999999999999999


Q ss_pred             -CCCCccCHHHHHHHHHHHH
Q 014692          396 -DPSKAITSDDVHQIFENLA  414 (420)
Q Consensus       396 -e~gkvVt~EDIk~FFe~l~  414 (420)
                       ++|+|||+|||++||++++
T Consensus       326 A~~~~vv~reDI~~FF~~~~  345 (345)
T KOG2752|consen  326 ADEGTVVTREDIQQFFEEFQ  345 (345)
T ss_pred             hhcCeEeeHHHHHHHHHhhC
Confidence             9999999999999999874

>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1776 consensus Zn-binding protein Push [Signal transduction mechanisms] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 4e-09
1wem_A76 Death associated transcription factor 1; structura 1e-06
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 3e-06
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 7e-06
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 9e-06
3o70_A68 PHD finger protein 13; PHF13, structural genomics 2e-05
1wee_A72 PHD finger family protein; structural genomics, PH 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 1e-04
3ny3_A75 E3 ubiquitin-protein ligase UBR2; zinc finger-like 2e-04
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 3e-04
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 3e-04
3kv5_D 488 JMJC domain-containing histone demethylation prote 4e-04
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 Back     alignment and structure
 Score = 52.2 bits (125), Expect = 4e-09
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 13/77 (16%)

Query: 116 AENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEG 175
           +  S       VYC C +PY          MI+C +C+DWFH   +G+E  +        
Sbjct: 2   SSGSSGMALVPVYCLCRQPY-----NVNHFMIECGLCQDWFHGSCVGIEEEN-------- 48

Query: 176 EPVYEDFICKACSAVCS 192
               + + C  C AV  
Sbjct: 49  AVDIDIYHCPDCEAVFG 65
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 Back     alignment and structure
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A Length = 75 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query420
3o70_A68 PHD finger protein 13; PHF13, structural genomics 99.54
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 99.5
1we9_A64 PHD finger family protein; structural genomics, PH 99.38
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 99.33
1wem_A76 Death associated transcription factor 1; structura 99.31
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 99.26
1wee_A72 PHD finger family protein; structural genomics, PH 99.14
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 99.1
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 99.06
3kv5_D 488 JMJC domain-containing histone demethylation prote 99.05
1wew_A78 DNA-binding family protein; structural genomics, P 99.0
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 98.96
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 98.91
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 98.89
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 98.89
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 98.86
1weu_A91 Inhibitor of growth family, member 4; structural g 98.85
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 98.82
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 98.81
1x4i_A70 Inhibitor of growth protein 3; structural genomics 98.78
2k16_A75 Transcription initiation factor TFIID subunit 3; p 98.76
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 98.73
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 98.72
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 98.69
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 98.68
3rsn_A177 SET1/ASH2 histone methyltransferase complex subun; 98.4
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 98.3
2ku7_A140 MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio 97.96
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 97.58
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 97.43
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 97.29
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 97.02
3ny3_A75 E3 ubiquitin-protein ligase UBR2; zinc finger-like 96.96
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 96.71
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 96.66
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 96.64
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 96.4
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 96.34
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 96.27
2yt5_A66 Metal-response element-binding transcription facto 96.26
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 96.25
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 96.08
3nis_A82 E3 ubiquitin-protein ligase UBR1; E3 ubiquitin lig 96.05
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 96.03
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 95.78
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 95.62
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 95.03
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 95.01
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 94.86
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 94.75
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 94.65
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 94.63
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 93.99
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 93.07
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 92.38
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 86.99
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
Probab=99.54  E-value=1.2e-15  Score=119.67  Aligned_cols=62  Identities=24%  Similarity=0.508  Sum_probs=45.7

Q ss_pred             CCCccCcCCCCCCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692          113 VENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV  190 (420)
Q Consensus       113 ~~n~~N~Yn~Nf~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~  190 (420)
                      .+++.|.|++++.++||+|+++|+      .++||||+.|++|||..|||++..      ..    .+.|+|+.|...
T Consensus         6 ~~~~~~~~~~~~~~~~CiC~~~~~------~~~MIqCd~C~~WfH~~Cvgi~~~------~~----~~~~~C~~C~~s   67 (68)
T 3o70_A            6 HHSSGRENLYFQGLVTCFCMKPFA------GRPMIECNECHTWIHLSCAKIRKS------NV----PEVFVCQKCRDS   67 (68)
T ss_dssp             --------CTTTTCCCSTTCCCCT------TCCEEECTTTCCEEETTTTTCCTT------SC----CSSCCCHHHHTC
T ss_pred             cCCcccccCCCCCceEeECCCcCC------CCCEEECCCCCccccccccCcCcc------cC----CCcEECCCCCCC
Confidence            467899999999999999999973      478999999999999999999642      11    358999999753
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 420
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 9e-07
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 1e-06
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 2e-05
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 0.001
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 0.004
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (104), Expect = 9e-07
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 13/63 (20%)

Query: 127 VYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKA 186
           VYC C +PY          MI+C +C+DWFH   +G+E  +            + + C  
Sbjct: 13  VYCLCRQPYNVNH-----FMIECGLCQDWFHGSCVGIEEEN--------AVDIDIYHCPD 59

Query: 187 CSA 189
           C A
Sbjct: 60  CEA 62
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query420
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 99.12
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 98.87
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 98.79
d1wema_76 Death associated transcription factor 1, Datf1 (DI 98.79
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 98.78
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.57
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 98.54
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 98.04
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.03
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 97.97
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 97.48
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=2.8e-12  Score=101.00  Aligned_cols=55  Identities=36%  Similarity=0.930  Sum_probs=43.1

Q ss_pred             CCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014692          124 FKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC  191 (420)
Q Consensus       124 f~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~  191 (420)
                      -..+||+|+++| |+    .+.||||+.|+.|||..|+++...    ....    .+.|+|+.|..+.
T Consensus        10 ~~pv~CiC~~~~-~~----~~~mI~Cd~C~~W~H~~C~g~~~~----~~~~----~~~~~C~~C~~~~   64 (79)
T d1wepa_          10 LVPVYCLCRQPY-NV----NHFMIECGLCQDWFHGSCVGIEEE----NAVD----IDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCCCSTTSCSC-CS----SSCEEEBTTTCCEEEHHHHTCCHH----HHTT----CSBBCCTTTTTTS
T ss_pred             cCCeEeECCCcc-CC----CCcEEECCCCCCcEeccccCcchh----cCCC----CCEEECccCcCCc
Confidence            356899999998 34    368999999999999999998532    1122    4679999998654
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure