Citrus Sinensis ID: 014716
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 420 | 2.2.26 [Sep-21-2011] | |||||||
| Q9P3K8 | 598 | Probable transporter MCH1 | N/A | no | 0.514 | 0.361 | 0.252 | 1e-07 | |
| Q6CGU8 | 486 | Probable transporter MCH1 | yes | no | 0.319 | 0.275 | 0.285 | 5e-06 | |
| Q96TW9 | 489 | Probable transporter MCH1 | N/A | no | 0.473 | 0.406 | 0.215 | 0.0001 | |
| Q4IM48 | 572 | Probable transporter MCH1 | yes | no | 0.485 | 0.356 | 0.244 | 0.0003 |
| >sp|Q9P3K8|MCH1_NEUCR Probable transporter MCH1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mch-1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 109/257 (42%), Gaps = 41/257 (15%)
Query: 176 PGEESQVKAEFDDKKLKDEEDMN--ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIG 233
P +S + E D+ ++K +N + + W + +G G A +NN+ +
Sbjct: 323 PDNDSDSEEEDDNARIKKTWVLNAETRRFLTDHTMWCFALGFFLMIGPGEAFINNLGTVI 382
Query: 234 ESL--------GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVL---------------- 269
++L G PTSA VS+ I + L R G ++D++
Sbjct: 383 KTLYPPHLKFVGEPTSAATH-VSIVGITSTLVRLLTGSLTDLLAPSPQARHVQITSSGTL 441
Query: 270 --HRMGWERPSFIAITLATMSVGHIVVASGFPGN----LYVGSIIVGVCYGCQWSLMPTI 323
R R SF+ T+SVG +ASG+ N +V S +VG YG +SL P I
Sbjct: 442 ERKRFSLSRVSFLLFFAVTLSVGLATLASGWIQNHGERFWVASGLVGAGYGAVFSLTPII 501
Query: 324 TYEIFGVGHMGTIFNTIAIASPVGS----YVCSVRIIGYIYDNVASGEGNS----CNGTH 375
I+GV + T + +A+ +G+ V S + ++G+G C G+
Sbjct: 502 ITVIWGVENFATNWGIVAMFPALGATFWGLVYSAVYQSGVEKAASNGQGGEEDQFCYGSE 561
Query: 376 CFMLSFLIMASVAFVGC 392
C+ +F MA+ +V C
Sbjct: 562 CYASAFWAMAASVWVAC 578
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Probable transporter. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) |
| >sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MCH1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 80/147 (54%), Gaps = 13/147 (8%)
Query: 247 VSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASG----FPGNL 302
VSL++ ++ + R G+ S+ + + RP +++ + H++V SG F
Sbjct: 316 VSLFATFSTVSRLVVGFSSEAMESHV--SRPVLLSVIALVAACIHLMVPSGIFTVFDNAK 373
Query: 303 Y--VGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIY 360
Y V +I+ G YG ++L+PTI +++G+ ++GTI+ + +A VGS + + +Y
Sbjct: 374 YFSVVTIVNGFSYGSSFTLVPTIVTKVWGIANLGTIWGSFILALAVGSLGYGL-LFAKVY 432
Query: 361 DNVAS-GEGNS---CNGTHCFMLSFLI 383
D + G G+ C+G HC+ L+F+I
Sbjct: 433 DAASEVGVGSMSQVCSGVHCYGLTFVI 459
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Probable transporter. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) |
| >sp|Q96TW9|MCH1_HANAN Probable transporter MCH1 OS=Hansenula anomala GN=MCH1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 94/209 (44%), Gaps = 10/209 (4%)
Query: 176 PGEESQVKAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES 235
P +E + ++ L L+ + ++ ++L ++L +G + N+ + ++
Sbjct: 237 PNQEHE-----NNDDLVPNHKSKFLKFIKDISTYVLLFSLLLSIGPSEMYITNMGSLVKA 291
Query: 236 LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI--AITLATMSVGHIV 293
+ P S I+ V++ ++++ L R G +SD ++ R + I L + I
Sbjct: 292 IT-PNSLISDQVAIHAVFSTLSRLSLGALSDFLVTNYQISRSWLLLSIIVLGFFTQIFIA 350
Query: 294 VASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 353
++ Y+ S + G YG ++L PT+ + I+G G+ + + IA +GS +
Sbjct: 351 TSTFVKDQYYIISALSGFSYGGLFTLYPTVIFSIWGPEIFGSAWGSFMIAPAIGSTTFGM 410
Query: 354 RIIGYIYDNVASGEGNSCNGTHCFMLSFL 382
+ G +YD+ S G +C L FL
Sbjct: 411 -VFGLVYDSACGVFAESTTG-NCVSLVFL 437
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Probable transporter. Hansenula anomala (taxid: 4927) |
| >sp|Q4IM48|MCH1_GIBZE Probable transporter MCH1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=MCH1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 104/250 (41%), Gaps = 46/250 (18%)
Query: 177 GEESQVKAEFDDKKLKDEEDMNILQSVCTLNF------WLLFVAMLCGMGSGLATVNNIS 230
GEE++ A D K + N + + T +F W +A L +G G A +NN+
Sbjct: 293 GEETESSALLDPSKDNAKWKKNWVLNAETRSFLADRTMWPFALAFLLIVGPGEAFINNLG 352
Query: 231 QIGESLGYPT-------SAINSLVSLWSIWNFLGRFGGGYVSDI---------------- 267
I +L P ++ + VS++ I N R G ++D+
Sbjct: 353 TIIGTLTPPEMEGWSHRTSAATHVSIFGITNTASRIFIGTLTDLLAPYPHTQHVQGPSTR 412
Query: 268 --VLHRMGWERPSFIAITLATMSVGHIVVASGFPGN----LYVGSIIVGVCYGCQWSLMP 321
V R R +F+A + +S+G +++ASG N ++ S +VG YG +SL P
Sbjct: 413 SAVSSRFSISRVAFMAFFASMLSIGLLILASGLVQNHAERFWLVSGLVGAGYGAIFSLTP 472
Query: 322 TITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASG-----EGNS-----C 371
+ I+GV + T + I + GS + + Y N A+ EG+ C
Sbjct: 473 LMVTIIWGVENFATNYGLIGMLPAAGSTFWGL-VYSATYQNGANKSKAGPEGSDRDDLFC 531
Query: 372 NGTHCFMLSF 381
G C+ ++
Sbjct: 532 YGEQCYAPTY 541
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Probable transporter. Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 420 | ||||||
| 359491754 | 559 | PREDICTED: uncharacterized protein LOC10 | 0.926 | 0.695 | 0.640 | 1e-140 | |
| 297734047 | 612 | unnamed protein product [Vitis vinifera] | 0.890 | 0.611 | 0.638 | 1e-137 | |
| 255540871 | 551 | conserved hypothetical protein [Ricinus | 0.938 | 0.715 | 0.645 | 1e-134 | |
| 224133334 | 530 | predicted protein [Populus trichocarpa] | 0.888 | 0.703 | 0.639 | 1e-133 | |
| 356508612 | 557 | PREDICTED: uncharacterized protein LOC10 | 0.942 | 0.710 | 0.573 | 1e-133 | |
| 356519027 | 557 | PREDICTED: uncharacterized protein LOC10 | 0.942 | 0.710 | 0.573 | 1e-132 | |
| 29824365 | 533 | unknown protein [Arabidopsis thaliana] g | 0.892 | 0.703 | 0.593 | 1e-127 | |
| 15221382 | 533 | nodulin-like and major facilitator domai | 0.892 | 0.703 | 0.590 | 1e-126 | |
| 357454707 | 619 | Nodulin-like protein [Medicago truncatul | 0.9 | 0.610 | 0.550 | 1e-123 | |
| 225456622 | 537 | PREDICTED: uncharacterized protein LOC10 | 0.935 | 0.731 | 0.563 | 1e-123 |
| >gi|359491754|ref|XP_002266530.2| PREDICTED: uncharacterized protein LOC100244916 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust.
Identities = 255/398 (64%), Positives = 308/398 (77%), Gaps = 9/398 (2%)
Query: 21 VQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVRIHGTNSADDKKHL 80
++GFLGL GA LIQ YD +++G PS ++L+LALLPTF SLL M LVRI ++ +KK L
Sbjct: 164 MKGFLGLSGAVLIQVYDALFEGNPSIFILMLALLPTFISLLLMCLVRIDERDTQGNKKQL 223
Query: 81 NAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLLSSPLGIAIKAQREDTTRL 140
N FS VAL +AAYLMI+IILENIFTFPLWARI T + LL LL+SPLGIA A ++++
Sbjct: 224 NRFSTVALLVAAYLMIVIILENIFTFPLWARIATLILLLLLLASPLGIAANALKDESEIS 283
Query: 141 SPTF-ATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQVKAEFDDKKLKDEEDMNI 199
S +++RSPL+ + S ++S++ H A+ D L+DEED+N+
Sbjct: 284 SQGLVSSERSPLLSDNGSLQSERWSSAAGDPKEHH--------AADEDTPMLQDEEDLNV 335
Query: 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRF 259
+Q++ T NFWLLF+AM CGMGSGLAT+NNISQIGESLGY T IN+LVSLWSIWNFLGRF
Sbjct: 336 VQAMRTGNFWLLFIAMACGMGSGLATINNISQIGESLGYTTVEINTLVSLWSIWNFLGRF 395
Query: 260 GGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSL 319
G GYVSDI+LHR GW RP + ITLATM++GH+++ASGF GNLYVGS+IVGVCYG QWSL
Sbjct: 396 GAGYVSDILLHRRGWARPLLMVITLATMTIGHVIIASGFAGNLYVGSVIVGVCYGSQWSL 455
Query: 320 MPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFML 379
MPTIT E+FGVGHMGTIFNTIAIASPVGSY+ SVR+IGYIYD ASG+ NSC+GTHCFML
Sbjct: 456 MPTITSELFGVGHMGTIFNTIAIASPVGSYLLSVRVIGYIYDKEASGKQNSCSGTHCFML 515
Query: 380 SFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGHS 417
SFLI+ V G LVA LF RT+RFYK VVLRRL S
Sbjct: 516 SFLIIGCVTLFGSLVASALFFRTKRFYKLVVLRRLNLS 553
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734047|emb|CBI15294.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 254/398 (63%), Positives = 304/398 (76%), Gaps = 24/398 (6%)
Query: 21 VQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVRIHGTNSADDKKHL 80
++GFLGL GA LIQ YD +++G PS ++L+LALLPTF SLL M LVRI ++ +KK L
Sbjct: 150 MKGFLGLSGAVLIQVYDALFEGNPSIFILMLALLPTFISLLLMCLVRIDERDTQGNKKQL 209
Query: 81 NAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLLSSPLGIAIKAQREDTTRL 140
N FS VAL +AAYLMI+IILENIFTFPLWARI T + LL LL+SPLGIA A ++++
Sbjct: 210 NRFSTVALLVAAYLMIVIILENIFTFPLWARIATLILLLLLLASPLGIAANALKDESEIS 269
Query: 141 SPTF-ATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQVKAEFDDKKLKDEEDMNI 199
S +++RSPL+ P+ +H A+ D L+DEED+N+
Sbjct: 270 SQGLVSSERSPLLRDPKE--------------HH---------AADEDTPMLQDEEDLNV 306
Query: 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRF 259
+Q++ T NFWLLF+AM CGMGSGLAT+NNISQIGESLGY T IN+LVSLWSIWNFLGRF
Sbjct: 307 VQAMRTGNFWLLFIAMACGMGSGLATINNISQIGESLGYTTVEINTLVSLWSIWNFLGRF 366
Query: 260 GGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSL 319
G GYVSDI+LHR GW RP + ITLATM++GH+++ASGF GNLYVGS+IVGVCYG QWSL
Sbjct: 367 GAGYVSDILLHRRGWARPLLMVITLATMTIGHVIIASGFAGNLYVGSVIVGVCYGSQWSL 426
Query: 320 MPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFML 379
MPTIT E+FGVGHMGTIFNTIAIASPVGSY+ SVR+IGYIYD ASG+ NSC+GTHCFML
Sbjct: 427 MPTITSELFGVGHMGTIFNTIAIASPVGSYLLSVRVIGYIYDKEASGKQNSCSGTHCFML 486
Query: 380 SFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGHS 417
SFLI+ V G LVA LF RT+RFYK VVLRRL S
Sbjct: 487 SFLIIGCVTLFGSLVASALFFRTKRFYKLVVLRRLNLS 524
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540871|ref|XP_002511500.1| conserved hypothetical protein [Ricinus communis] gi|223550615|gb|EEF52102.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 257/398 (64%), Positives = 307/398 (77%), Gaps = 4/398 (1%)
Query: 21 VQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVRIHGTNSADDKKHL 80
++GFLGL GA LIQ Y+T+ KG PST++L+LA+ PT SLL M+LVR + T+S DDKKHL
Sbjct: 157 MKGFLGLSGAILIQFYNTVCKGDPSTFILLLAVTPTLISLLLMTLVRNYDTSSKDDKKHL 216
Query: 81 NAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLLSSPLGIAIKAQREDTTRL 140
NAFSAVALTIAAYL I II ENIF PLW R++TFL LL L+ SPL IA +A RE + R
Sbjct: 217 NAFSAVALTIAAYLTINIIFENIFILPLWIRLVTFLVLLLLVGSPLAIATRALRESSDRY 276
Query: 141 SPTFATQRSPLVDCPETTTSTKFSASQDSVAYHEL-PGEESQVKAEFDDKKLKDEEDMNI 199
+ +R P T S++ +D Y L E+ + KA D + DEED+N+
Sbjct: 277 AQALLEERGYK---PNTMMSSELPTEEDPNDYRALLSNEDLEAKATSDHRSSSDEEDLNL 333
Query: 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRF 259
LQ+V T NFWLLF+AM CG+GSGLAT+NNISQ+G+SLGY + NSLVSL SIWNFLGRF
Sbjct: 334 LQAVSTGNFWLLFIAMFCGLGSGLATINNISQVGQSLGYTAISRNSLVSLLSIWNFLGRF 393
Query: 260 GGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSL 319
G G++SDI LHR GW RP F+AITLAT+++GHIV+ASGFP NLY+GS++VG+ YG QWSL
Sbjct: 394 GAGFISDIFLHRGGWARPLFVAITLATLAIGHIVIASGFPYNLYLGSVLVGISYGSQWSL 453
Query: 320 MPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFML 379
MPTIT EIFGVGHMGTIFNTIAIASP+GSY+ SVR+IGYIYD ASGE N C GT CFML
Sbjct: 454 MPTITSEIFGVGHMGTIFNTIAIASPLGSYIFSVRVIGYIYDKAASGEDNLCYGTRCFML 513
Query: 380 SFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGHS 417
SFLIMASVAF G LVA +LF RTRRFY+ VVLRR+ HS
Sbjct: 514 SFLIMASVAFFGVLVALVLFFRTRRFYQAVVLRRVHHS 551
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133334|ref|XP_002321541.1| predicted protein [Populus trichocarpa] gi|222868537|gb|EEF05668.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 252/394 (63%), Positives = 299/394 (75%), Gaps = 21/394 (5%)
Query: 21 VQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVRIHGTNSADDKKHL 80
++GFLGL GA LIQ Y T+ G P T+LL+LAL PT SLLFMSLVR + TN+ DDKK+L
Sbjct: 155 MKGFLGLSGAILIQFYQTVCNGDPGTFLLLLALTPTLVSLLFMSLVRNYDTNTKDDKKYL 214
Query: 81 NAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLLSSPLGIAIKAQREDTTRL 140
NAFSAV+L IAAYL IIIILENI + ARIITF LL L++SPLGIA++A RED+ R
Sbjct: 215 NAFSAVSLIIAAYLTIIIILENISSLSSLARIITFTVLLLLVASPLGIAVRAHREDSDRY 274
Query: 141 SPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQVKAEFDDKKLKDEEDMNIL 200
+ QR + Q+ V E+ KA D+++L DE +MN+L
Sbjct: 275 AQALLEQRG---------------SKQNPVISSEIS------KAASDNERLSDEGNMNLL 313
Query: 201 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFG 260
Q++C++NFWLLF+AM CG+GSGLA +NNISQIGESLGY + NSLVSL SIWNFLGRFG
Sbjct: 314 QALCSVNFWLLFIAMFCGLGSGLAMINNISQIGESLGYTATERNSLVSLLSIWNFLGRFG 373
Query: 261 GGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLM 320
G+VSDI LHR GW RP F+A+TLA M++GHI+VA+GF NLY+GS++VGV YG QWSLM
Sbjct: 374 AGFVSDIFLHRGGWARPLFVAVTLAIMTIGHIIVAAGFSKNLYLGSVLVGVAYGSQWSLM 433
Query: 321 PTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLS 380
PTIT EIFGVGHMGTIFNTIAIASPVGSY SVR+IG+IYD V SGE N+C G+ CFMLS
Sbjct: 434 PTITSEIFGVGHMGTIFNTIAIASPVGSYTFSVRVIGFIYDKVGSGENNTCFGSRCFMLS 493
Query: 381 FLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRL 414
F+IMASVAF G LVA LLF RTRRFYK VV RRL
Sbjct: 494 FMIMASVAFFGVLVALLLFFRTRRFYKSVVFRRL 527
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508612|ref|XP_003523049.1| PREDICTED: uncharacterized protein LOC100775628 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/399 (57%), Positives = 299/399 (74%), Gaps = 3/399 (0%)
Query: 21 VQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVRIHGTNSADDKKHL 80
++GFLGL GA LIQ Y T + G P+TYLL+LA+LP+ +L M +RI+ + +D KKHL
Sbjct: 162 MKGFLGLSGAILIQIYHTFFDGDPATYLLMLAVLPSLICVLLMFFLRIYEVHGSDYKKHL 221
Query: 81 NAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLLSSPLGIAIKAQREDTTRL 140
+ FS V + I AYLM IIIL+N+ + P W R+ F+ L+ LL++P GIAIKA E++ +
Sbjct: 222 DGFSVVTVIIVAYLMFIIILQNLVSLPNWGRMFAFVILMVLLATPFGIAIKAHWEESRKF 281
Query: 141 SPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQVKAEFDDKKLKDEEDMNIL 200
S ++ +R + + TTS+ SAS D V YHELP +E QV+ DDK L EE+ N+L
Sbjct: 282 SQSYTIERGSSTN--KGTTSSSHSASVDQVEYHELPSDEGQVQVTSDDK-LPREEEKNLL 338
Query: 201 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFG 260
Q++CT++FW+LFV M+ G+GSGLAT+NN+SQIG+SLGY IN+LVSLWS+WNFLGRFG
Sbjct: 339 QAMCTVDFWMLFVIMISGLGSGLATINNMSQIGQSLGYSAIEINNLVSLWSMWNFLGRFG 398
Query: 261 GGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLM 320
GG+VSD ++HR GW RP + +TL M +GH+++ASGF GNLY+G ++VG+CYG WSLM
Sbjct: 399 GGHVSDYIMHRKGWPRPLLMTVTLGIMILGHLIIASGFQGNLYLGPVLVGICYGAHWSLM 458
Query: 321 PTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLS 380
PTIT EIFGV HMGTIFNTIA ASP+GSY+ SVR++GYIYD A E +SC G +CFM S
Sbjct: 459 PTITSEIFGVKHMGTIFNTIAAASPLGSYILSVRVVGYIYDKQADKEDHSCFGINCFMPS 518
Query: 381 FLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGHSSR 419
F I+A+VAF+ LV LF RTRRFYKQVVLRRL H +R
Sbjct: 519 FFILAAVAFLAFLVGLALFFRTRRFYKQVVLRRLKHYAR 557
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519027|ref|XP_003528176.1| PREDICTED: uncharacterized protein LOC100799596 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/399 (57%), Positives = 295/399 (73%), Gaps = 3/399 (0%)
Query: 21 VQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVRIHGTNSADDKKHL 80
++GFLGL GA LIQ Y T + G P+TYLL+LA LP+F +L M L+RI+ + +D KKHL
Sbjct: 162 MKGFLGLSGAILIQIYHTFFDGDPATYLLMLAALPSFICVLLMFLLRIYEVHGSDYKKHL 221
Query: 81 NAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLLSSPLGIAIKAQREDTTRL 140
+ FS V + I AYLM IIIL+N+ + P W R+ F+ L+ LL++P GIAIKA E++ +
Sbjct: 222 DGFSVVTVIIVAYLMFIIILQNLVSLPYWGRMFAFVILMVLLATPFGIAIKAHWEESRKF 281
Query: 141 SPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQVKAEFDDKKLKDEEDMNIL 200
+ ++ RS + + TTS+ +SAS D V YHELP +E Q + DDK L EE+ N+
Sbjct: 282 AQSYTIGRSSSTN--KGTTSSSYSASVDQVEYHELPSDEGQEQVTSDDK-LPREEEKNLW 338
Query: 201 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFG 260
Q++CT++FW+LFV M+ G+GSGLAT+NN+SQIG+SLGY T IN+LVSLWS+WNFLGRFG
Sbjct: 339 QAMCTVDFWMLFVIMISGLGSGLATINNMSQIGQSLGYSTIEINNLVSLWSMWNFLGRFG 398
Query: 261 GGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLM 320
GG+VSD ++HR GW RP + TL M +GH+++ASGF GNLY+G ++VG+CYG WSLM
Sbjct: 399 GGHVSDYIMHRKGWPRPLLMTATLGIMILGHLIIASGFRGNLYLGPVLVGICYGAHWSLM 458
Query: 321 PTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLS 380
PTIT EIFGV HMGTIFNTIA ASP+GSY+ SVR++GYIYD A E N C G CFM S
Sbjct: 459 PTITSEIFGVKHMGTIFNTIAAASPLGSYILSVRVVGYIYDKQADKEDNLCFGIDCFMPS 518
Query: 381 FLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGHSSR 419
F I+A VA + LV LF RTRRFYKQVVLRRL H +R
Sbjct: 519 FFILAGVALLAFLVGLALFFRTRRFYKQVVLRRLKHYAR 557
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|29824365|gb|AAP04143.1| unknown protein [Arabidopsis thaliana] gi|110739083|dbj|BAF01458.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 235/396 (59%), Positives = 296/396 (74%), Gaps = 21/396 (5%)
Query: 21 VQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVRIHGTNSADDKKHL 80
++GFLGL GA LIQ Y+T+ G P++++L+LA+ PT SLL M LVRI+ T+ ADDKKHL
Sbjct: 158 MKGFLGLSGAILIQLYETLCAGDPASFILLLAVTPTVLSLLVMPLVRIYETSVADDKKHL 217
Query: 81 NAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLLSSPLGIAIKAQREDTTRL 140
N SAV+L IAAYLMIIIIL+N F WA I+T + LL +L+ PL IA +AQR+ +
Sbjct: 218 NGLSAVSLIIAAYLMIIIILKNTFGLSSWANIVTLVCLLVMLALPLLIARRAQRDGMEKT 277
Query: 141 SPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQVKAEFDDKKLKDEEDMNIL 200
P SPL+ P+ TTS S+ DS +V+A ED+N+L
Sbjct: 278 VPH---DYSPLISSPKATTSGNQSSEGDS-----------KVEAGL-------SEDLNLL 316
Query: 201 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFG 260
Q++ L+FWLLF+AM+CGMGSGL+T+NNI QIGESL Y + INSLVSLWSIWNFLGRFG
Sbjct: 317 QAMKKLSFWLLFLAMICGMGSGLSTINNIRQIGESLRYSSVEINSLVSLWSIWNFLGRFG 376
Query: 261 GGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLM 320
GY SD +LH+ GW RP +A TL TMS+GH+++ASGF GNLYVGS+IVGVCYG QWSLM
Sbjct: 377 AGYASDALLHKKGWPRPLLMAATLGTMSIGHLIIASGFQGNLYVGSVIVGVCYGSQWSLM 436
Query: 321 PTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLS 380
PTIT E+FG+ HMGTIFNTI++ASP+GSY+ SVR+IGYIYD ASGEGN+C G+HCF LS
Sbjct: 437 PTITSELFGIRHMGTIFNTISVASPIGSYIFSVRLIGYIYDKTASGEGNTCYGSHCFRLS 496
Query: 381 FLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGH 416
F+IMASVAF G LVA +LF RT+ Y+Q++++RL H
Sbjct: 497 FIIMASVAFFGFLVAIVLFFRTKTLYRQILVKRLHH 532
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15221382|ref|NP_177616.1| nodulin-like and major facilitator domain-containing protein [Arabidopsis thaliana] gi|5882744|gb|AAD55297.1|AC008263_28 Strong similarity to gb|AF031243 nodule-specific protein (Nlj70) from Lotus japonicus and is a member of the PF|00083 Sugar (and other) transporter family. EST gb|Z37715 comes from this gene [Arabidopsis thaliana] gi|332197510|gb|AEE35631.1| nodulin-like and major facilitator domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 234/396 (59%), Positives = 296/396 (74%), Gaps = 21/396 (5%)
Query: 21 VQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVRIHGTNSADDKKHL 80
++GFLGL GA LIQ Y+T+ G P++++L+LA+ PT SLL M LVRI+ T+ ADDKKHL
Sbjct: 158 MKGFLGLSGAILIQLYETLCAGDPASFILLLAVTPTVLSLLVMPLVRIYETSVADDKKHL 217
Query: 81 NAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLLSSPLGIAIKAQREDTTRL 140
N SAV+L IAAYLMIIIIL+N F WA I+T + LL +L+ PL IA +AQR+ +
Sbjct: 218 NGLSAVSLIIAAYLMIIIILKNTFGLSSWANIVTLVCLLVMLALPLLIARRAQRDGMEKT 277
Query: 141 SPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQVKAEFDDKKLKDEEDMNIL 200
P SPL+ P+ TTS S+ DS +V+A E++N+L
Sbjct: 278 VPH---DYSPLISSPKATTSGNQSSEGDS-----------KVEAGLS-------ENLNLL 316
Query: 201 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFG 260
Q++ L+FWLLF+AM+CGMGSGL+T+NNI QIGESL Y + INSLVSLWSIWNFLGRFG
Sbjct: 317 QAMKKLSFWLLFLAMICGMGSGLSTINNIRQIGESLRYSSVEINSLVSLWSIWNFLGRFG 376
Query: 261 GGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLM 320
GY SD +LH+ GW RP +A TL TMS+GH+++ASGF GNLYVGS+IVGVCYG QWSLM
Sbjct: 377 AGYASDALLHKKGWPRPLLMAATLGTMSIGHLIIASGFQGNLYVGSVIVGVCYGSQWSLM 436
Query: 321 PTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLS 380
PTIT E+FG+ HMGTIFNTI++ASP+GSY+ SVR+IGYIYD ASGEGN+C G+HCF LS
Sbjct: 437 PTITSELFGIRHMGTIFNTISVASPIGSYIFSVRLIGYIYDKTASGEGNTCYGSHCFRLS 496
Query: 381 FLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGH 416
F+IMASVAF G LVA +LF RT+ Y+Q++++RL H
Sbjct: 497 FIIMASVAFFGFLVAIVLFFRTKTLYRQILVKRLHH 532
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357454707|ref|XP_003597634.1| Nodulin-like protein [Medicago truncatula] gi|355486682|gb|AES67885.1| Nodulin-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/396 (55%), Positives = 279/396 (70%), Gaps = 18/396 (4%)
Query: 21 VQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVRIHGTNSADDKKHL 80
++GFLGL GA LIQ Y T + G P+T+LL+LA LP F S+LFM L+RI+ D KKHL
Sbjct: 161 MKGFLGLSGAILIQLYHTFFDGDPATFLLMLACLPAFISVLFMFLLRIYQVQDCDYKKHL 220
Query: 81 NAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLLSSPLGIAIKAQREDTTRL 140
+ FS V + I YLM I+L+N + P WAR+ TF L+ LL+SP GIA+KA ED+
Sbjct: 221 DGFSVVTVIIVVYLMFTIVLQNFVSLPYWARVFTFTVLMVLLASPFGIAVKAHWEDSRMF 280
Query: 141 SPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQVKAEFDDKKLKDEEDMNIL 200
S + ETT T + Y ELP EE QV+ + D L EE+MN+L
Sbjct: 281 SQAHSI---------ETTAPT--------IEYQELPSEEVQVQ-DTSDNTLLVEEEMNLL 322
Query: 201 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFG 260
Q++CT+ FW+LFV M+ G+GSGL+ +NN+SQIGESLGY T I ++VSLWS+WNFLGRFG
Sbjct: 323 QAMCTVEFWMLFVTMIAGLGSGLSMINNMSQIGESLGYSTIQIGNMVSLWSMWNFLGRFG 382
Query: 261 GGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLM 320
GG+VSD ++H+ GW RP + +TL +GH+++ASGFPGN Y+G ++VG+CYG WSLM
Sbjct: 383 GGHVSDYIMHKRGWPRPLLLTVTLGVTILGHLIIASGFPGNFYLGPVLVGICYGTNWSLM 442
Query: 321 PTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLS 380
PT+T EIFGV HMGTIFN IA ASP+GSY+ SV+++G IYD AS E NSC G HCF LS
Sbjct: 443 PTVTSEIFGVKHMGTIFNAIAAASPLGSYILSVKVVGNIYDKEASEEDNSCFGIHCFRLS 502
Query: 381 FLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGH 416
FLI+A V FV LV+ L+ RTRRFYK VVL+RL H
Sbjct: 503 FLILAGVTFVAFLVSLALYFRTRRFYKLVVLKRLKH 538
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456622|ref|XP_002266496.1| PREDICTED: uncharacterized protein LOC100250053 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 232/412 (56%), Positives = 283/412 (68%), Gaps = 19/412 (4%)
Query: 8 NRIPFFFFLPLSTVQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVR 67
+ P F + ++GFLGL GA LIQ Y I+KG P++YLL+L L+ T LL M LVR
Sbjct: 144 HNFPDFSGTVVGIMKGFLGLSGAILIQLYQAIFKGNPASYLLMLMLVTTVNPLLLMCLVR 203
Query: 68 IHGTNSADDKKHLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLLSSPLG 127
I+ T D+KKHLN FS VAL +A YLM +IILENI T AR+ T + LL LL+ PL
Sbjct: 204 IYNTKEGDEKKHLNGFSLVALVVAGYLMALIILENILTLQFPARLFTLVLLLLLLAMPLA 263
Query: 128 IAIKAQREDTTRLSPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQVKAEFD 187
+ IKAQ+ + S TF +++ L+D P+ + K QD YH
Sbjct: 264 VTIKAQQSNFDGTSQTFLIEKNQLIDDPKQLDAEKIGKGQDPAGYHL------------- 310
Query: 188 DKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLV 247
E++N+LQ++ T NFW LF+AM CGMGSGLATVNNI QIG + GY + ++LV
Sbjct: 311 ------GENLNLLQAMGTCNFWCLFLAMACGMGSGLATVNNIGQIGGAFGYKSFETSTLV 364
Query: 248 SLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSI 307
SLWSIWNFLGRFG GYVSD LH GW RP F+ ITLATMS+GH V+ASG PG LY GS+
Sbjct: 365 SLWSIWNFLGRFGTGYVSDYFLHTRGWARPVFMVITLATMSIGHFVIASGMPGALYAGSV 424
Query: 308 IVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGE 367
+VGV YG QWSLMPTIT EIFGV H+GTIFNTI +ASPVGSY+ SVR++GYIYD AS +
Sbjct: 425 LVGVSYGSQWSLMPTITSEIFGVQHLGTIFNTITMASPVGSYIFSVRVVGYIYDKEASAD 484
Query: 368 GNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGHSSR 419
GN C GTHCFM+SFLIMAS +GC VA +LF+RT+ FY QVVLRRL H R
Sbjct: 485 GNKCTGTHCFMVSFLIMASATLLGCFVALILFLRTKSFYNQVVLRRLQHPGR 536
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 420 | ||||||
| TAIR|locus:2027284 | 533 | AT1G74780 [Arabidopsis thalian | 0.523 | 0.412 | 0.695 | 9.5e-120 | |
| TAIR|locus:2011241 | 526 | AT1G18940 [Arabidopsis thalian | 0.507 | 0.404 | 0.652 | 3.9e-110 | |
| TAIR|locus:2040809 | 525 | AT2G34350 [Arabidopsis thalian | 0.519 | 0.415 | 0.669 | 1.2e-106 | |
| TAIR|locus:1005716659 | 523 | AT2G34355 [Arabidopsis thalian | 0.514 | 0.413 | 0.657 | 6.6e-102 | |
| TAIR|locus:2056103 | 601 | AT2G39210 "AT2G39210" [Arabido | 0.511 | 0.357 | 0.414 | 1.4e-56 | |
| TAIR|locus:2174683 | 579 | AT5G14120 [Arabidopsis thalian | 0.490 | 0.355 | 0.385 | 2.9e-52 | |
| TAIR|locus:2046238 | 577 | AT2G28120 [Arabidopsis thalian | 0.938 | 0.682 | 0.318 | 9.2e-52 | |
| TAIR|locus:2059829 | 546 | AT2G16660 [Arabidopsis thalian | 0.495 | 0.380 | 0.404 | 1.6e-49 | |
| TAIR|locus:2078643 | 584 | AT3G01930 [Arabidopsis thalian | 0.490 | 0.352 | 0.366 | 1.1e-48 | |
| TAIR|locus:2116855 | 567 | AT4G34950 [Arabidopsis thalian | 0.926 | 0.686 | 0.298 | 1.4e-46 |
| TAIR|locus:2027284 AT1G74780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 864 (309.2 bits), Expect = 9.5e-120, Sum P(2) = 9.5e-120
Identities = 153/220 (69%), Positives = 188/220 (85%)
Query: 197 MNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFL 256
+N+LQ++ L+FWLLF+AM+CGMGSGL+T+NNI QIGESL Y + INSLVSLWSIWNFL
Sbjct: 313 LNLLQAMKKLSFWLLFLAMICGMGSGLSTINNIRQIGESLRYSSVEINSLVSLWSIWNFL 372
Query: 257 GRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQ 316
GRFG GY SD +LH+ GW RP +A TL TMS+GH+++ASGF GNLYVGS+IVGVCYG Q
Sbjct: 373 GRFGAGYASDALLHKKGWPRPLLMAATLGTMSIGHLIIASGFQGNLYVGSVIVGVCYGSQ 432
Query: 317 WSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHC 376
WSLMPTIT E+FG+ HMGTIFNTI++ASP+GSY+ SVR+IGYIYD ASGEGN+C G+HC
Sbjct: 433 WSLMPTITSELFGIRHMGTIFNTISVASPIGSYIFSVRLIGYIYDKTASGEGNTCYGSHC 492
Query: 377 FMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGH 416
F LSF+IMASVAF G LVA +LF RT+ Y+Q++++RL H
Sbjct: 493 FRLSFIIMASVAFFGFLVAIVLFFRTKTLYRQILVKRLHH 532
|
|
| TAIR|locus:2011241 AT1G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 806 (288.8 bits), Expect = 3.9e-110, Sum P(2) = 3.9e-110
Identities = 139/213 (65%), Positives = 181/213 (84%)
Query: 197 MNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFL 256
+N+LQ++C ++FWLLF+AM+CGMGSG++T+NNI QIGESL Y + INSL++LW+IWNF+
Sbjct: 306 LNLLQAMCNVDFWLLFLAMICGMGSGISTINNIRQIGESLRYTSVEINSLLALWNIWNFI 365
Query: 257 GRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQ 316
GRFGGGYVSD +LHR GW RP +A TL TM++GH+++ASGF GNLY GSIIVG+CYG Q
Sbjct: 366 GRFGGGYVSDWLLHRKGWPRPLLMATTLGTMTIGHLIIASGFQGNLYPGSIIVGICYGSQ 425
Query: 317 WSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHC 376
WSLMPTIT E+FGV HMGTI+NTI+IASP+GSY+ SVR+IGYIYD GEGN+C G HC
Sbjct: 426 WSLMPTITSELFGVKHMGTIYNTISIASPMGSYIFSVRLIGYIYDRTIIGEGNTCYGPHC 485
Query: 377 FMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQV 409
F L+++++ASVAF+G LV+ +L RT+ Y+Q+
Sbjct: 486 FRLAYVVIASVAFLGFLVSCVLVFRTKTIYRQI 518
|
|
| TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 806 (288.8 bits), Expect = 1.2e-106, Sum P(2) = 1.2e-106
Identities = 146/218 (66%), Positives = 180/218 (82%)
Query: 197 MNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFL 256
MN+L+++CT NFWLLFVAM+CGMGSGLAT+NNI Q+GESL Y T +NSLVSLWSIWNFL
Sbjct: 306 MNVLEAICTTNFWLLFVAMICGMGSGLATINNIRQMGESLRYSTVQLNSLVSLWSIWNFL 365
Query: 257 GRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQ 316
GRFG GY+SD LH GW RP F+AITL M++GHIV+ASG G+LY+GS++VG+ YG Q
Sbjct: 366 GRFGSGYISDTYLHSHGWPRPVFMAITLGLMAIGHIVMASGLLGSLYIGSLLVGLAYGSQ 425
Query: 317 WSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHC 376
WSLMPTIT EIFGV HMGTIF TI+IASPVGSY SV++IGY+YD VAS + +SC G HC
Sbjct: 426 WSLMPTITSEIFGVLHMGTIFYTISIASPVGSYFFSVKVIGYLYDKVASEDDHSCYGNHC 485
Query: 377 FMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRL 414
F SFLIMA++A +G LVA +L +RT++FY +V +R+
Sbjct: 486 FRTSFLIMAAMALLGSLVALVLLLRTKKFYATLVAKRI 523
|
|
| TAIR|locus:1005716659 AT2G34355 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 782 (280.3 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 142/216 (65%), Positives = 174/216 (80%)
Query: 198 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLG 257
NIL+++ T+NFWLLF+AMLCGMGSG ATVNN+ QIGESL Y + +NSLVSLWSIWNFLG
Sbjct: 305 NILEAMSTVNFWLLFLAMLCGMGSGFATVNNMRQIGESLRYSSVQLNSLVSLWSIWNFLG 364
Query: 258 RFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQW 317
RFG GYVSD LH+ W RP F+AITL M++GHI+VASG G+LY GS+++G+ YG QW
Sbjct: 365 RFGAGYVSDTFLHKHSWPRPIFMAITLGVMAIGHIIVASGVQGSLYAGSVLIGMAYGSQW 424
Query: 318 SLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCF 377
SLMPTIT EIFG+ HMGTI+ TI+IA P+GSY+ SV++IGY YD VAS + NSC G+ CF
Sbjct: 425 SLMPTITSEIFGIRHMGTIYFTISIAGPIGSYILSVKVIGYFYDKVASEDDNSCFGSQCF 484
Query: 378 MLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRR 413
SF+IMASVA G LVA +LF RT +FYK +V +R
Sbjct: 485 RTSFMIMASVALFGSLVASVLFFRTHKFYKNLVAKR 520
|
|
| TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 94/227 (41%), Positives = 146/227 (64%)
Query: 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGR 258
ILQ++ +++ +LF+A +CG+G L ++N+ QIG SLGYP ++++ VSL SIWN+ GR
Sbjct: 336 ILQALFSVDMLILFLATICGVGGTLTAIDNLGQIGNSLGYPKRSVSTFVSLVSIWNYYGR 395
Query: 259 FGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWS 318
G VS+I L + + RP + + L GH+++A PG LYV S+I+G C+G QW
Sbjct: 396 VVSGVVSEIFLIKYKFPRPLMLTMVLLLSCAGHLLIAFNVPGGLYVASVIIGFCFGAQWP 455
Query: 319 LMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS------------G 366
L+ I EIFG+ + T++N ++ASP+GSY+ +VR+ GY+YD A G
Sbjct: 456 LLFAIISEIFGLKYYSTLYNFGSVASPIGSYLLNVRVAGYLYDVEAGKQYKALGKTRVEG 515
Query: 367 EGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRR 413
+ +C GT CF LSF+I+A+V G LV+ +L IRT++FYK + ++
Sbjct: 516 QDLNCIGTSCFKLSFIIIAAVTLFGVLVSMVLVIRTKKFYKSDIYKK 562
|
|
| TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 449 (163.1 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 84/218 (38%), Positives = 134/218 (61%)
Query: 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGR 258
+ Q++ +FWL+F ++L G GSGL ++N+ Q+ +SLGY + + LVS+ SIWNFLGR
Sbjct: 355 LTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHV--LVSMISIWNFLGR 412
Query: 259 FGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWS 318
GGGY S++V+ + RP +A+ MSVGHI A G+PG +Y+G++++G+ YG W+
Sbjct: 413 IGGGYFSELVVRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLIGLGYGAHWA 472
Query: 319 LMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNS-------- 370
++P E+FG+ G ++N + +A+P GS V S I IYD A + +
Sbjct: 473 IVPATASELFGLKKFGALYNFLTLANPAGSLVFSGMIASSIYDREAERQAHGSVFDPDDA 532
Query: 371 --CNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFY 406
CNG+ CF L+ LIM+ + C+++ +L RT+ Y
Sbjct: 533 LRCNGSICFFLTSLIMSGFCIIACMLSMILVRRTKSVY 570
|
|
| TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 132/415 (31%), Positives = 211/415 (50%)
Query: 18 LSTVQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVRIHGT-NSADD 76
L ++G++GL GA Q Y I+ + +L++A LP SL+F+ L+R ++
Sbjct: 149 LGLLKGYVGLSGAIFTQLYFAIYGHDSKSLILLIAWLPAAVSLVFVYLIREKKVVRQRNE 208
Query: 77 KKHLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITXXXXXXXXSSPLGIAIKAQRED 136
F +++ +A +LM + I E F A + PL +++K + E
Sbjct: 209 LSVFYQFLYISIFLALFLMAMNIAEKQVHFSKAAYAASATICCALLFVPLTVSVKQELEV 268
Query: 137 TTRLSPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQVXXXXXXXXXX--XX 194
+ V+ P+ + QD A ++ GEE +
Sbjct: 269 WNMMKLPIEEPSEVKVEKPKK----ELDLDQDKAA--KVNGEEKETKSCFSTVFSPPPRG 322
Query: 195 XXMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWN 254
ILQ++ + + +LFVA CG+GS L V+N+ QIGESLGYP ++S VSL SIWN
Sbjct: 323 EDYTILQALLSTDMIILFVATFCGLGSSLTAVDNLGQIGESLGYPNHTVSSFVSLVSIWN 382
Query: 255 FLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYG 314
+ GR G+VS+ +L + RP + + L GH+++A PG++Y+ SI++G +G
Sbjct: 383 YFGRVFSGFVSEYLLAKYKLPRPLMMTLVLLLSCAGHLLIAFPVPGSVYIASILMGFSFG 442
Query: 315 CQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA----SGEGNS 370
Q L+ I E+FG+ + T+FN +ASP+GSY+ +VR+ G +YD A + G +
Sbjct: 443 AQLPLLFAIISELFGLKYYSTLFNCGQLASPLGSYILNVRVTGMLYDKEALKQLTARGLT 502
Query: 371 --------CNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGHS 417
C G+ C+ L FLI+A+V F G LV+ L IRTR FYK + ++ S
Sbjct: 503 RKDVKDLTCLGSQCYKLPFLILAAVTFFGALVSLGLAIRTREFYKGDIYKKFRES 557
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| TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 448 (162.8 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 87/215 (40%), Positives = 143/215 (66%)
Query: 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGR 258
I+++V T++FW+LFV+ LCG+G+GLA +NN+ QIG +LGY +I VS+ SIW F GR
Sbjct: 321 IMEAVLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTNVSI--FVSMTSIWGFFGR 378
Query: 259 FGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWS 318
G +S+ L + G RP + A + M+VG+I++A P +LY+GS++VGVCYG + +
Sbjct: 379 ILSGTLSEYFLKKAGTPRPLWNAASQILMAVGYILMALAVPNSLYIGSMVVGVCYGVRLA 438
Query: 319 L-MPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS---GEGNSCNGT 374
+ +PT + E+FG+ + G I+N + + P+GS++ S + G++YD A+ G GN+C G
Sbjct: 439 ITVPTAS-ELFGLKYYGLIYNILVLNLPLGSFLFSGLLAGFLYDAEATPTPGGGNTCVGA 497
Query: 375 HCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQV 409
HC+ L F++MA + +G + +L RT+ Y ++
Sbjct: 498 HCYRLIFIVMALASVIGVGLDLVLAYRTKEIYAKI 532
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| TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 420 (152.9 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 80/218 (36%), Positives = 131/218 (60%)
Query: 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGR 258
+ Q++ +FWL+F ++L G GSGL ++N+ Q+ +SLGY + + VS+ SIWNFLGR
Sbjct: 360 LTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHV--FVSMISIWNFLGR 417
Query: 259 FGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWS 318
GGGY S++++ + RP IA+ MSVGHI A G+PG +++G++++G+ YG W+
Sbjct: 418 IGGGYFSELIVRDYAYPRPVAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIGLGYGAHWA 477
Query: 319 LMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS--GEGN------- 369
++P E+FG+ G ++N + +A+P GS V S I IYD A +G+
Sbjct: 478 IVPATASELFGLKKFGALYNFLTLANPAGSLVFSGLIASSIYDREAERQAQGSLFNPDDV 537
Query: 370 -SCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFY 406
C G+ C+ L+ LIM+ + ++ +L RT+ Y
Sbjct: 538 LRCRGSICYFLTSLIMSGFCLIAAALSMILVQRTKPVY 575
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| TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 123/412 (29%), Positives = 213/412 (51%)
Query: 17 PLSTV-QGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVRI--HGTNS 73
P+S + +G++GL A + ++ P+++L++L+++P L + +R T
Sbjct: 146 PVSGILKGYVGLSTAIFTDLCNALFSSDPASFLVLLSVVPFAVCLTAVFFLREIPPSTTF 205
Query: 74 ADDK---KHLNAFSAVALTIAAYLM---IIIILENIFTFPLWARIITXXXXXXXXSSPLG 127
A+D K+ F+ VA+ +A YL II I F+ + ++
Sbjct: 206 AEDNEESKYFAVFNIVAVVVAVYLQSYDIIGIKTGAFSIAFASILLILLASPVAVPFHAF 265
Query: 128 IAIKAQREDTT--RLSPTFATQRSPLVDCPETTTSTKFSASQD-SVAYHELPGEESQ--- 181
I K E R+ S ++ ET +A + + L EE +
Sbjct: 266 IRSKVHDEQDVEGRIDEPLLRSGSE-IEVEETIVGAAAAADNELPPSLKPLSNEEEENHG 324
Query: 182 VXXXXXXXXXXXXXXMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTS 241
I++++ T++FW+LFV+ LCG+G+GLA +NN+ QIG +LGY
Sbjct: 325 TIVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTDV 384
Query: 242 AINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGN 301
+I VS+ SIW F GR G +S+ + + G RP + A M+VG++++A PG+
Sbjct: 385 SI--FVSMTSIWGFFGRILSGTISEHFIKKAGTPRPLWNAAAQIIMAVGYLLMALALPGS 442
Query: 302 LYVGSIIVGVCYGCQWSL-MPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIY 360
LY+GS++VGVCYG + ++ +PT + E+FG+ + G I+N + + P+GS++ S + G +Y
Sbjct: 443 LYIGSMVVGVCYGVRLAITVPTAS-ELFGLKYYGLIYNILILNMPLGSFLFSGLLAGLLY 501
Query: 361 DNVAS---GEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQV 409
D A+ G GN+C G HCF + F++MA + +G + LL RT+ Y ++
Sbjct: 502 DAEATPTPGGGNTCVGAHCFRIVFIVMAFASIIGVGLDLLLAYRTKGIYAKI 553
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00000066001 | SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (596 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 420 | |||
| pfam06813 | 248 | pfam06813, Nodulin-like, Nodulin-like | 5e-15 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 4e-10 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 8e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.002 |
| >gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 5e-15
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
Query: 18 LSTVQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVRIHG---TNSA 74
L ++G+ GL A Q Y I+ S+ LL+ AL+P SL+ + +R
Sbjct: 133 LGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALYFIRPCPGKVGEQR 192
Query: 75 DDKKHLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLLSSPLGIAI 130
+ F+ +++ +A YL+ + IL F ++ LL PL + I
Sbjct: 193 SESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMVLLLLVPLAVPI 248
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This family represents a conserved region within plant nodulin-like proteins. Length = 248 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 4e-10
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 13/166 (7%)
Query: 194 EEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIW 253
+D + + + T FW+L+++ SGL + G+SLG + VS+ SI+
Sbjct: 193 VKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIF 252
Query: 254 NFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGN---LYVGSIIVG 310
N GR G +SD R ++I +VG + N +V
Sbjct: 253 NGGGRPFLGALSD------KIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF 306
Query: 311 VCYGCQWSLMPTITYEIFGVGHM----GTIFNTIAIASPVGSYVCS 352
+G SL P++ +IFG + G ++ A+A G + S
Sbjct: 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIAS 352
|
This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 8e-05
Identities = 40/209 (19%), Positives = 77/209 (36%), Gaps = 18/209 (8%)
Query: 210 LLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVL 269
L A L G+G L + E LG + I L++ +S+ L + G +SD
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 270 HRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFG 329
R R I + L + + ++ AS L V ++ G+ G + + + F
Sbjct: 61 RR----RVLLIGLLLFALGLLLLLFASSLWL-LLVLRVLQGLGGGALFPAAAALIADWFP 115
Query: 330 VGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAF 389
G ++ +G+ + + + G + + +FLI+A +A
Sbjct: 116 PEERGRALGLLSAGFGLGAALGPL-LGGLLASLFG------------WRAAFLILAILAL 162
Query: 390 VGCLVAFLLFIRTRRFYKQVVLRRLGHSS 418
+ ++A LL R K+ +
Sbjct: 163 LAAVLAALLLPRPPPESKRPKPAEEAPAP 191
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 37/193 (19%), Positives = 69/193 (35%), Gaps = 18/193 (9%)
Query: 208 FWLLFVAMLCGMGSGLATVNNISQI-GESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSD 266
LL +A + + E LG + L+SL+ + LG GG +SD
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236
Query: 267 IVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYE 326
+ R + L + ++ + L V +++G G + + T+ E
Sbjct: 237 RLGRRRLLLLIGLLLAALGLL----LLALAPSLALLLVALLLLGFGLGFAFPALLTLASE 292
Query: 327 IFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMAS 386
+ GT +G + + + G + D T + FLI+A+
Sbjct: 293 LAPPEARGTASGLFNTFGSLGGALGPL-LAGLLLD------------TGGYGGVFLILAA 339
Query: 387 VAFVGCLVAFLLF 399
+A + L+ LL
Sbjct: 340 LALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 21/196 (10%)
Query: 208 FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDI 267
L L G+ GL + + + E LG S +VS +S+ LG GY+SD
Sbjct: 2 LLLFLGFFLSGLDRGLLSPA-LPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 268 VLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYE 326
R + + L ++G +++A + L VG ++G+ G + + E
Sbjct: 61 FGRRR------VLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE 114
Query: 327 IFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMAS 386
F G + +G+ + + G + +++ + FLI+A
Sbjct: 115 WFPPKERGRALGLFSAGFGLGA-LLGPLLGGLLAESLG------------WRWLFLILAI 161
Query: 387 VAFVGCLVAFLLFIRT 402
+ + L+ L
Sbjct: 162 LGLLLALLLLFLLRLL 177
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 6/152 (3%)
Query: 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGR 258
+ + L +A+L + A + + E LG L+ L + +GR
Sbjct: 195 AWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGR 254
Query: 259 FGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNL--YVGSIIVGVCYGCQ 316
G +SD R+G R +A+ L ++ + + S +L V +++G G
Sbjct: 255 LLLGRLSD----RLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLV 310
Query: 317 WSLMPTITYEIFGVGHMGTIFNTIAIASPVGS 348
+ + + ++ GT A +G
Sbjct: 311 FPALNALVSDLAPKEERGTASGLYNTAGSLGG 342
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 420 | |||
| PTZ00207 | 591 | hypothetical protein; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.85 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.82 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.81 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.81 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.8 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.8 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.8 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.79 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.78 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.77 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.75 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.75 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.74 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.74 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.74 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.73 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.73 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.73 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.72 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.7 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.7 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.69 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.69 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.69 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.69 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.69 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.68 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.67 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.67 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.67 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.67 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.67 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.67 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.67 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.67 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.66 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.66 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.66 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.65 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.65 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.64 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.64 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.64 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.64 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.64 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.63 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.63 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.63 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.63 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.62 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.62 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.62 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.61 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.61 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.61 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.61 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.6 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.6 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.6 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.59 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.59 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.59 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.58 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.58 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.57 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.57 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.57 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.57 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.56 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.56 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.56 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.56 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.56 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.55 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.55 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.53 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.53 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.53 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.53 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.53 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.53 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.52 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.52 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.52 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.52 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.52 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.52 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.52 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.51 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.51 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.51 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.51 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.51 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.5 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.5 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.5 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.5 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.5 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.49 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.49 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.49 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.49 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.49 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.49 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.49 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.49 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.48 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.48 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.48 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.48 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.48 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.47 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.47 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.47 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.47 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.47 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.46 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.46 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.45 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.45 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.45 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.45 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.45 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.44 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.44 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.44 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.44 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.43 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.43 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.43 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.42 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.42 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.42 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.41 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.41 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.41 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.41 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.4 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.4 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.38 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.37 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.36 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.35 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.35 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.34 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.33 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.33 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.33 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.32 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.32 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.32 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.31 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.3 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.28 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.28 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.28 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.27 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.27 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.26 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.26 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.26 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.25 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.25 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.25 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.24 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.24 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.23 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.23 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.23 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.22 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.22 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.22 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.22 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.22 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.21 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.21 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.2 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.2 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.19 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.19 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.19 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.15 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.14 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.14 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.13 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.13 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.12 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.09 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.09 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.08 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.03 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.03 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.02 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.99 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.99 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.98 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.94 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.93 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.93 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.84 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.83 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.83 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.82 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.82 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.82 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.75 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.72 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.72 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.71 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.7 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.67 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.65 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.64 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.63 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.63 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.62 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.61 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.61 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.6 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.6 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.59 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.49 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.46 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.44 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.44 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.41 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.37 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.35 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.31 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.31 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.25 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.96 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.92 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.87 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.85 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.85 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.8 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.79 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 97.75 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.73 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.52 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.52 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.48 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 97.42 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.41 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.33 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.27 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.23 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.22 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.19 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 97.02 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.02 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.98 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.97 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.88 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.86 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.84 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.68 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.61 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 96.33 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 96.32 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.74 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 95.61 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 95.29 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 94.92 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 94.86 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 94.74 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 94.64 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 94.2 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 93.27 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 92.65 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 92.58 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 91.19 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 90.32 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 90.23 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 89.14 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 88.09 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 85.45 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 83.99 | |
| PF03547 | 385 | Mem_trans: Membrane transport protein; InterPro: I | 83.7 |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-43 Score=350.68 Aligned_cols=384 Identities=15% Similarity=0.227 Sum_probs=301.5
Q ss_pred eeeecCCCccccchhHhhhhhhccchHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHhheeeecCCCCC--------
Q 014716 3 YFLEYNRIPFFFFLPLSTVQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVRIHGTNSA-------- 74 (420)
Q Consensus 3 ~~~~~~r~~~~~~~~~g~~~~~~gLs~~i~~~~~~~~~~~~~~~~~~~l~~~p~~i~~~~~~~~~~~p~~~~-------- 74 (420)
+| |++||++ +|+.+++.|+|++++++++..++.++.+.++++++++++.++++.+.++|.+|++..
T Consensus 148 ~F-p~~RG~a-----~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~ 221 (591)
T PTZ00207 148 VF-PSNRGAV-----VAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLD 221 (591)
T ss_pred hC-hhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCC
Confidence 45 5889999 999999999999999999999998888899999999999999999999999886541
Q ss_pred -ccch-----------------hhhhHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHH-HHHhhh-hhhhhhccc
Q 014716 75 -DDKK-----------------HLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLL-FLLSSP-LGIAIKAQR 134 (420)
Q Consensus 75 -~~~~-----------------~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~ll~~~-l~v~~~~~~ 134 (420)
+|+. +|.....+++++++|+++.++++++.+.++..+...+++++ +++..| +.+|.+...
T Consensus 222 ~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~ 301 (591)
T PTZ00207 222 EEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFD 301 (591)
T ss_pred HHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhc
Confidence 1222 34445578999999999999999988888888888888776 777778 678876421
Q ss_pred cccccCCCCcccCCCCCCCCCCCCcccccCCCCCcccccCCCCCcccchhhhccccccccccCcHHHHhhCHHHHHHHHH
Q 014716 135 EDTTRLSPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQVKAEFDDKKLKDEEDMNILQSVCTLNFWLLFVA 214 (420)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 214 (420)
. ...++ ++++ + +.+.. +...+. . .++.+..+.+.+...|+..+ +++|.+++.+||++|+.
T Consensus 302 ~--~~~~~----~~~~--~---~~~~~-----~~~~~~-~-~~~~~~~~~~~~~~~P~~~~--t~~q~l~~~d~Wll~~~ 361 (591)
T PTZ00207 302 G--KRPHD----DSDG--K---AKEHV-----EAGEEV-S-AAEDKVVETDVDYIAPQFQE--TFIEGLKTARLWCLLWS 361 (591)
T ss_pred c--CCcCC----Cccc--c---ccccc-----cccccc-c-ccccccccccccCCCCCCcc--hHHHHHhchhHHHHHHH
Confidence 1 11100 0001 0 00000 000000 0 00000000000112233333 89999999999999999
Q ss_pred HHHhcccchhhhccHHHHHHHc-CCCccc--hhHHHHHHHHHHHHhHhhhhhhhHhHhhhcC----CChhHHHHHHHHHH
Q 014716 215 MLCGMGSGLATVNNISQIGESL-GYPTSA--INSLVSLWSIWNFLGRFGGGYVSDIVLHRMG----WERPSFIAITLATM 287 (420)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~-g~s~~~--~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~----~~r~~~~~i~~~~~ 287 (420)
++|+.+.+..+++|+.|+.+++ |++.+. ..++++++++++++||+.+|.++ .+.+|++ .+|+..+.+..+ +
T Consensus 362 ~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l~~~~~-~ 439 (591)
T PTZ00207 362 IFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIALFIPSV-C 439 (591)
T ss_pred HHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHHHHHHH-H
Confidence 9999999999999999999999 884333 33389999999999999999997 6666665 688888888888 8
Q ss_pred HHHHHHHHhcCc-hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCC
Q 014716 288 SVGHIVVASGFP-GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASG 366 (420)
Q Consensus 288 ~~~~l~l~~~~~-~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~ 366 (420)
.+++++++...+ ..+++..++.|+|+|..++...++++|+|+ |+.|+.|++..++..+|+++++..++|.+||+++.+
T Consensus 440 ~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k 518 (591)
T PTZ00207 440 IITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADK 518 (591)
T ss_pred HHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888777774455 789999999999999999999999999999 999999999999999999999999999999999865
Q ss_pred C-CCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Q 014716 367 E-GNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLG 415 (420)
Q Consensus 367 ~-~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (420)
+ +..|.|.+||+.+|++++++|+++++++.+++.|+|+.+++..++|+|
T Consensus 519 ~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~y~~~~~~~~~ 568 (591)
T PTZ00207 519 LGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRRLCLKALEERRR 568 (591)
T ss_pred CCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHHHHHHHHHHHHH
Confidence 4 569999999999999999999999999999999999998876655443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=181.80 Aligned_cols=283 Identities=11% Similarity=0.016 Sum_probs=204.0
Q ss_pred eecCCCccccchhHhhhhhhccchHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHhheeeecCCCCCccchhhhhHH
Q 014716 5 LEYNRIPFFFFLPLSTVQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVRIHGTNSADDKKHLNAFS 84 (420)
Q Consensus 5 ~~~~r~~~~~~~~~g~~~~~~gLs~~i~~~~~~~~~~~~~~~~~~~l~~~p~~i~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (420)
|+++|+++ .|+.....++|.+++|.+++.+.+...|++.|+++ .|+.+ +......+..|++.+++++.+|..+
T Consensus 125 ~~~~r~~~-----~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~-~~~~~-~~~~l~~~~l~~~~~~~~~~~d~~g 197 (495)
T PRK14995 125 EEKQRNMA-----LGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLIN-VPIVL-VVMGLTARYVPRQAGRRDQPLNLGH 197 (495)
T ss_pred CHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHH-HHHHH-HHHHHHHHhCCCCCCCCCCCCChHh
Confidence 67889999 99999999999999999999999999999999999 66654 3333334445554433444578777
Q ss_pred HHHHHHHHHHHHHHHHhcccc-CchhHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCcccCCCCCCCCCCCCccccc
Q 014716 85 AVALTIAAYLMIIIILENIFT-FPLWARIITFLFLLFLLSSPLGIAIKAQREDTTRLSPTFATQRSPLVDCPETTTSTKF 163 (420)
Q Consensus 85 ~i~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~ll~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (420)
.+....+...+...+.+...+ ++.+..+...+..++++..++..+.+ .++|.
T Consensus 198 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~---------------~~~p~------------ 250 (495)
T PRK14995 198 ALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLA---------------ASRPM------------ 250 (495)
T ss_pred HHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhc---------------CCCCC------------
Confidence 666555555555555443322 33333333333343444333331110 00111
Q ss_pred CCCCCcccccCCCCCcccchhhhccccccccccCcHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccc
Q 014716 164 SASQDSVAYHELPGEESQVKAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSA 242 (420)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~ 242 (420)
-..+.+|++.++...+..++......+...++|.++|.. |+++.+
T Consensus 251 ----------------------------------~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ 296 (495)
T PRK14995 251 ----------------------------------IDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLE 296 (495)
T ss_pred ----------------------------------cCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 116788888888887777777666667777889888875 999999
Q ss_pred hhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHh----cCchhHHHHHHHHHHhhhhhhh
Q 014716 243 INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVAS----GFPGNLYVGSIIVGVCYGCQWS 318 (420)
Q Consensus 243 ~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~----~~~~~l~~~~~l~G~~~g~~~~ 318 (420)
+++......++..++.++.|++.||+ ++|..+..+.++.+++.+++.. .+........++.|++.|...+
T Consensus 297 ag~~~~~~~~~~~~~~~~~g~l~~r~------g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~ 370 (495)
T PRK14995 297 AGMFMLPVMVASGFSGPIAGILVSRL------GLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALL 370 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc------CchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999 5556677777777766655431 2223355677888999999888
Q ss_pred hHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHh
Q 014716 319 LMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN 362 (420)
Q Consensus 319 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~ 362 (420)
.....+.+..|++++|.+.++.++...+|. .+|+.+.|.+++.
T Consensus 371 ~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~-~~G~ai~g~i~~~ 413 (495)
T PRK14995 371 ASTSAIMAAAPPEKAAAAGAIETMAYELGA-GLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHhcCCHHhcchHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 888888999999999999999999998988 4788888888764
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-19 Score=169.32 Aligned_cols=188 Identities=15% Similarity=0.146 Sum_probs=150.6
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
.+..++|+..|++.++.++.+..-+++..|.|.|+.+. |+|..++++..+++-++...|.+++||+|||+-|. +|.
T Consensus 245 ~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkg---rR~ 321 (448)
T COG2271 245 VKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKG---RRG 321 (448)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc---ccc
Confidence 46778999999999999999999999999999999877 99999999999999999999999999999999543 333
Q ss_pred HHHHHHHHHHHHHHHHHH-hcC--chhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhh-HHHHhhh
Q 014716 278 SFIAITLATMSVGHIVVA-SGF--PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPV-GSYVCSV 353 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~-~~~--~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~ 353 (420)
+.-.+.++...++.+.+- .++ .....++.+..|+...+.+-+......|..|++.-|++.|+..+...+ |. +++.
T Consensus 322 p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga-~~a~ 400 (448)
T COG2271 322 PMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGA-ALAG 400 (448)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhH-HhcC
Confidence 444444444444444433 222 244566677778777766667777888999999999999999999999 55 6888
Q ss_pred HHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014716 354 RIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRT 402 (420)
Q Consensus 354 ~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~ 402 (420)
...|++.|.+| |...|+++.+.++++.++.+....++
T Consensus 401 ~~~g~i~d~~g------------W~g~Fi~~~~~a~l~~lll~~~~~~~ 437 (448)
T COG2271 401 LPLGYIADTWG------------WDGGFIVLSIAALLAILLLLPVWNAE 437 (448)
T ss_pred CcceeeEecCC------------CcchHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999877 99999999988888887765544433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-18 Score=171.89 Aligned_cols=286 Identities=12% Similarity=0.026 Sum_probs=200.2
Q ss_pred eeeecCCCccccchhHhhhhhhccchHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHhheeeecCCCCCccchhhhh
Q 014716 3 YFLEYNRIPFFFFLPLSTVQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVRIHGTNSADDKKHLNA 82 (420)
Q Consensus 3 ~~~~~~r~~~~~~~~~g~~~~~~gLs~~i~~~~~~~~~~~~~~~~~~~l~~~p~~i~~~~~~~~~~~p~~~~~~~~~~~~ 82 (420)
++|+++||++ .|+......+|+.+++.+++.+.++..|++.++++.....+.+.... ...|++++.++++.|+
T Consensus 118 ~~~~~~r~~~-----~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~ 190 (485)
T TIGR00711 118 IYPPEKRGRA-----MAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAF--FILPRDKPAASENFDF 190 (485)
T ss_pred HCCHHHHHHH-----HHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHH--HHcCCccccccCCCcH
Confidence 4789999999 99999999999999999999999888999999998433333222222 2233333334445777
Q ss_pred HHHHHHHHHHHHHHHHHHhccc-cCchh-HHHHHHHHHHHHHhhhhhhhhhccccccccCCCCcccCCCCCCCCCCCCcc
Q 014716 83 FSAVALTIAAYLMIIIILENIF-TFPLW-ARIITFLFLLFLLSSPLGIAIKAQREDTTRLSPTFATQRSPLVDCPETTTS 160 (420)
Q Consensus 83 ~~~i~~~l~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~i~ll~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (420)
.+.+....+...+.....++.. .|.+. ......+..+..+..+...+.+ + ++|
T Consensus 191 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~------~~~---------- 245 (485)
T TIGR00711 191 LGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELT---------D------DNP---------- 245 (485)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHc---------C------CCC----------
Confidence 7766555555544444443322 23222 2222222232222222221110 0 000
Q ss_pred cccCCCCCcccccCCCCCcccchhhhccccccccccCcHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCC
Q 014716 161 TKFSASQDSVAYHELPGEESQVKAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYP 239 (420)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s 239 (420)
....+.+++++++...+..++.....+....++|.+.++. |++
T Consensus 246 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s 289 (485)
T TIGR00711 246 ------------------------------------LVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYT 289 (485)
T ss_pred ------------------------------------ccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0014677888888887777777766677778899999875 999
Q ss_pred ccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hc----CchhHHHHHHHHHHhhh
Q 014716 240 TSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SG----FPGNLYVGSIIVGVCYG 314 (420)
Q Consensus 240 ~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~----~~~~l~~~~~l~G~~~g 314 (420)
+.++++......++..+++++.|++.||+ +|++.+.++..+.+++.+++. .. +...+....++.|++.+
T Consensus 290 ~~~~g~~~~~~~~~~~~~~~~~g~l~~r~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~ 363 (485)
T TIGR00711 290 ALQAGLHILPVGLAPMLSSPIAGRMGDKI------DPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMG 363 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 666677777777777776654 11 12335566778899999
Q ss_pred hhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhh
Q 014716 315 CQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV 363 (420)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~ 363 (420)
..++.......+.+|++++|++.|+.+....+|. .+++.+.|.+.++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~-~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 364 CFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGG-SIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 8888888888888999999999999999999998 58889999888753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-18 Score=169.18 Aligned_cols=190 Identities=15% Similarity=0.175 Sum_probs=135.5
Q ss_pred HHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 201 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
..+|++.+|..++..++.....+....++|.|+++. |++..+++....++.++..++++++|+++||+++++ |+..
T Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r---~~~~ 324 (452)
T PRK11273 248 YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN---RGAT 324 (452)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---cchH
Confidence 467889999988888777766677788999999875 999888998888999999999999999999996432 2222
Q ss_pred HHHHHHHHHHHHHHHH--h-cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHH
Q 014716 280 IAITLATMSVGHIVVA--S-GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRII 356 (420)
Q Consensus 280 ~~i~~~~~~~~~l~l~--~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~ 356 (420)
......+..++.+.+. . .+.....+..++.|.+..........++.|.+|++.+|++.|+.+....+|+.+.+|.+.
T Consensus 325 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~ 404 (452)
T PRK11273 325 GVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 404 (452)
T ss_pred HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhH
Confidence 2222222333322222 1 122223334444454433333334456789999999999999998888888755689999
Q ss_pred HHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 014716 357 GYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRF 405 (420)
Q Consensus 357 g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~ 405 (420)
|.+.|+.| |+..|++++++++++++...++.+.+||+
T Consensus 405 g~l~~~~g------------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 441 (452)
T PRK11273 405 GYTVDFFG------------WDGGFMVMIGGSILAVILLIVVMIGEKRH 441 (452)
T ss_pred HHHHHHhc------------chHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999988 99999999998888887766555444433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=171.99 Aligned_cols=181 Identities=13% Similarity=0.197 Sum_probs=142.4
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
.+.++++.+|...+..++..........+++.|.++.|++..++++..++..++..++++++|+++||...++ .|+..
T Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~--~~~~~ 312 (455)
T TIGR00892 235 FSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRP--HVQYL 312 (455)
T ss_pred hHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCH--HHHHH
Confidence 3678899999888877776666666777888898889999999999999999999999999999999742111 22233
Q ss_pred HHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHH
Q 014716 280 IAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGY 358 (420)
Q Consensus 280 ~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~ 358 (420)
+..+..+.+++.+++. ..+...+++..++.|++.+...+...+++.|.+|++++|+.+|+.+....+|. .++|.++|.
T Consensus 313 ~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~-~igp~i~G~ 391 (455)
T TIGR00892 313 FSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAV-LIGPPLAGR 391 (455)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHH-Hccccceee
Confidence 3333333344444433 34555667778889999999999999999999999999999999999999999 589999999
Q ss_pred HHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 014716 359 IYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 359 l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
+.|..++ |+..|++.+++.+++.+.
T Consensus 392 l~~~~g~-----------~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 392 LVDATKN-----------YKYIFYASGSIVVSAGLF 416 (455)
T ss_pred eehhcCC-----------cchHHHHhhHHHHHHHHH
Confidence 9998765 889999988877776654
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-18 Score=168.86 Aligned_cols=178 Identities=15% Similarity=0.084 Sum_probs=127.1
Q ss_pred HhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHH
Q 014716 202 SVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 280 (420)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~ 280 (420)
.++++.+|...+..++.......+..++|.++++ .|++..+++...+.+.+++.+|++++|+++||+.++ +|+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~---~r~~~~ 315 (434)
T PRK11663 239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNG---NRGPMN 315 (434)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccC---CccHHH
Confidence 5678899998887777666666777899999864 599999999999999999999999999999999544 232322
Q ss_pred ---HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHH
Q 014716 281 ---AITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIG 357 (420)
Q Consensus 281 ---~i~~~~~~~~~l~l~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g 357 (420)
.++..+..+..+.+...+........++.|++...........+.|.+|++.+|++.|+.+....+|. +++|.+.|
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~~~p~~~g 394 (434)
T PRK11663 316 LIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGA-ALSGYPLA 394 (434)
T ss_pred HHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHH-HHhcccHH
Confidence 12222222222211122222222333334433332333445677899999999999999999999999 58999999
Q ss_pred HHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHH
Q 014716 358 YIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 395 (420)
Q Consensus 358 ~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~ 395 (420)
.+.|..| |+..|++.+++++++.+..
T Consensus 395 ~l~~~~g------------~~~~f~~~~~~~~~~~~~~ 420 (434)
T PRK11663 395 KVLEIWH------------WTGFFVVISIAAGISALLL 420 (434)
T ss_pred HHHHhcc------------cHHHHHHHHHHHHHHHHHH
Confidence 9999888 9999999888887776544
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=167.19 Aligned_cols=286 Identities=8% Similarity=-0.025 Sum_probs=190.7
Q ss_pred eeeecCCCccccchhHhhhhhhccchHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHhheeeecCCCCCccchhhhh
Q 014716 3 YFLEYNRIPFFFFLPLSTVQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVRIHGTNSADDKKHLNA 82 (420)
Q Consensus 3 ~~~~~~r~~~~~~~~~g~~~~~~gLs~~i~~~~~~~~~~~~~~~~~~~l~~~p~~i~~~~~~~~~~~p~~~~~~~~~~~~ 82 (420)
++|+++|+++ .|+......++..+++.+++.+.+...|++.|+++ .|..+ +.........|... .+++++|.
T Consensus 126 ~~~~~~~~~~-----~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~-~~~~~-l~~~~~~~~~~~~~-~~~~r~~~ 197 (471)
T PRK10504 126 IVPREQYMAA-----MTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN-IPVGI-IGAIATLMLMPNYT-MQTRRFDL 197 (471)
T ss_pred HcCHHHHHHH-----HHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH-HHHHH-HHHHHHHHhCCCcc-ccCCCCCh
Confidence 4688888998 99999999999999999999999888999999998 55433 22222223333322 22334666
Q ss_pred HHHHHHHHHHHHHHHHHHhccc-cCchhHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCcccCCCCCCCCCCCCccc
Q 014716 83 FSAVALTIAAYLMIIIILENIF-TFPLWARIITFLFLLFLLSSPLGIAIKAQREDTTRLSPTFATQRSPLVDCPETTTST 161 (420)
Q Consensus 83 ~~~i~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~ll~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (420)
.+..........+.....++.. .+.. ......++..+.+.......++ +. ++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------~~------~~------------ 250 (471)
T PRK10504 198 SGFLLLAVGMATLTLALDGSKGLGLSP-LAIAGLVAVGVVALLLYLLHAR--------NN------NR------------ 250 (471)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCCcch-HHHHHHHHHHHHHHHHHHHHHh--------cC------CC------------
Confidence 6555444444444333322221 1221 1111111111111111111111 00 00
Q ss_pred ccCCCCCcccccCCCCCcccchhhhccccccccccCcHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCc
Q 014716 162 KFSASQDSVAYHELPGEESQVKAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPT 240 (420)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~ 240 (420)
+ ....+.+||+.++..+...++............|+|.+. .|.++
T Consensus 251 -----------------------------~-----~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 296 (471)
T PRK10504 251 -----------------------------A-----LFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSP 296 (471)
T ss_pred -----------------------------C-----ccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 0 001457889999888887777766655666788988885 59999
Q ss_pred cchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHh-c-Cc--hhHHHHHHHHHHhhhhh
Q 014716 241 SAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVAS-G-FP--GNLYVGSIIVGVCYGCQ 316 (420)
Q Consensus 241 ~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~-~-~~--~~l~~~~~l~G~~~g~~ 316 (420)
..+++......++..++.++.|+++||+ +++..+..+..+.++..+++.. . .. ..+.+..++.|++.+..
T Consensus 297 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 370 (471)
T PRK10504 297 FHAGLMMIPMVLGSMGMKRIVVQVVNRF------GYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTR 370 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc------CchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 9999999989999999999999999999 5556666666666666554442 1 11 12344566778888888
Q ss_pred hhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhc
Q 014716 317 WSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 364 (420)
Q Consensus 317 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g 364 (420)
++..+.++.+.+|++.+|.++|+.+....+|. .+++.+.|.+.+..+
T Consensus 371 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~-~ig~~i~g~ll~~~g 417 (471)
T PRK10504 371 FSSMNTLTLKDLPDNLASSGNSLLSMIMQLSM-SIGVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHHHcCCHHhccchHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence 88899999999999999999999999999999 588999999988776
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-17 Score=166.70 Aligned_cols=192 Identities=14% Similarity=0.055 Sum_probs=133.8
Q ss_pred HHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 201 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
+.++++.+|...+..++......+...|+|.|+++ .|++..++++..+...++..++++++|+++||+++| ..
T Consensus 253 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r------~~ 326 (467)
T PRK09556 253 YVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGR------RA 326 (467)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------ch
Confidence 37899999999998888877777788899988875 599999999999999999999999999999999543 22
Q ss_pred HHHHHHHHHHHH--HHHHh-cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhh-HHHHhhhHH
Q 014716 280 IAITLATMSVGH--IVVAS-GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPV-GSYVCSVRI 355 (420)
Q Consensus 280 ~~i~~~~~~~~~--l~l~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~l 355 (420)
+.+...+..++. +.+.. .+....++..++.|++...........+.|.+|++.+|++.|+.+....+ |. .++|.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~-~~~~~~ 405 (467)
T PRK09556 327 LVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGD-SFAKVG 405 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhH-HHHhhh
Confidence 222222222222 12222 23333445566666544333334456777999999999999999988887 65 588999
Q ss_pred HHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 356 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 356 ~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
.|.+.|...+.....-+....|+..|++.++++++++++.+.+.
T Consensus 406 ~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 406 LGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred HHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999921100000000122399999999888888877665553
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-17 Score=159.92 Aligned_cols=187 Identities=16% Similarity=0.074 Sum_probs=134.7
Q ss_pred cHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCC--
Q 014716 198 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW-- 274 (420)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~-- 274 (420)
+.++.++++++|...+..++.......+..+.|.+.++. |.+..++++..+...+++.+++++.|+++||++||+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 286 (399)
T TIGR00893 207 QIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLV 286 (399)
T ss_pred chHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence 346788899999998888888888788888999888764 99988999999999999999999999999999766310
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhH
Q 014716 275 ERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 354 (420)
Q Consensus 275 ~r~~~~~i~~~~~~~~~l~l~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 354 (420)
.......++.++..+........+.....+...+.+.+..+..+...+++.|.+|+++||++.|+.+....+|. .++|.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~-~~~~~ 365 (399)
T TIGR00893 287 FARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGG-IVGPI 365 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhh-hhhhH
Confidence 00001111111111111111111122223333333333333678899999999999999999999999999999 58999
Q ss_pred HHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHH
Q 014716 355 IIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAF 396 (420)
Q Consensus 355 l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~ 396 (420)
+.|.+.|..|+ |+..|++.+++++++.+..+
T Consensus 366 i~g~l~~~~g~-----------~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 366 VIGAIAATTGS-----------FAGALMVVAALALIGALSYL 396 (399)
T ss_pred HhhhhccCCCc-----------hhHHHHHHHHHHHHHHHHHH
Confidence 99999998775 88899888888877766543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=154.85 Aligned_cols=120 Identities=36% Similarity=0.585 Sum_probs=109.2
Q ss_pred eeecCCCccccchhHhhhhhhccchHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHhheeeecCCC-----CCccch
Q 014716 4 FLEYNRIPFFFFLPLSTVQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVRIHGTN-----SADDKK 78 (420)
Q Consensus 4 ~~~~~r~~~~~~~~~g~~~~~~gLs~~i~~~~~~~~~~~~~~~~~~~l~~~p~~i~~~~~~~~~~~p~~-----~~~~~~ 78 (420)
| |++||++ +|++|+++|||++|++++|..+|++|+..|++|+++.|..+++++++++|..|++ +++|++
T Consensus 125 F-P~~RG~v-----vgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~ 198 (250)
T PF06813_consen 125 F-PRSRGTV-----VGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESK 198 (250)
T ss_pred C-ccccCce-----ehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhH
Confidence 5 5689999 9999999999999999999999999999999999999999999999999999853 245556
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHhhhhhhh
Q 014716 79 HLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLLSSPLGIA 129 (420)
Q Consensus 79 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ll~~~l~v~ 129 (420)
+|..+..+.+++++|++..++.+++.+.++..+....++++++++.|+.+|
T Consensus 199 ~F~~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~llL~~Pl~i~ 249 (250)
T PF06813_consen 199 RFLFFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLLLLLLPLAIP 249 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhcc
Confidence 688888899999999999999999999999999999899889999999876
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.9e-17 Score=160.69 Aligned_cols=188 Identities=15% Similarity=0.163 Sum_probs=131.5
Q ss_pred HHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 201 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
+.+|++.+|...+..++.....+....++|.++++. |+++.++++..+++.+.++++++++|+++||+++++ |...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~---~~~~ 322 (438)
T TIGR00712 246 YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN---RGAT 322 (438)
T ss_pred HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---ccHH
Confidence 467889999988877776666667788999999875 999999999999999999999999999999996542 1111
Q ss_pred HHHHHHHHHHHHHHHHh---cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHH
Q 014716 280 IAITLATMSVGHIVVAS---GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRII 356 (420)
Q Consensus 280 ~~i~~~~~~~~~l~l~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~ 356 (420)
.........++.+.+.. .+........++.|++.............|.+|++.+|++.|+.+....+|+.+++|.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~ 402 (438)
T TIGR00712 323 GVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 402 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhH
Confidence 11111111122222221 122222333344444332222222346779999999999999998887777545789999
Q ss_pred HHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014716 357 GYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTR 403 (420)
Q Consensus 357 g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~ 403 (420)
|.+.|..| |..+|++.+++++++++..+++.+++|
T Consensus 403 G~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 403 GYTVDFFG------------WDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHhcc------------chHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999887 999999998888888877766655443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=154.58 Aligned_cols=174 Identities=22% Similarity=0.328 Sum_probs=139.2
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
++.++++++|...+..++..........+.+.+.++.|.+..+.+.+.+...++..+++++.|+++||+ +|+..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~~~~ 272 (377)
T TIGR00890 199 WEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI------GRQKT 272 (377)
T ss_pred HHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhh
Confidence 567788888888777776655555556667777788898888889999999999999999999999999 45555
Q ss_pred HHHHHHHHHHHHHHHHh-cCch--hHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHH
Q 014716 280 IAITLATMSVGHIVVAS-GFPG--NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRII 356 (420)
Q Consensus 280 ~~i~~~~~~~~~l~l~~-~~~~--~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~ 356 (420)
+.++..+.+++.+++.. .... .+....++.|++.|..++..+++++|.+|++++|+..|+.+....+|. .++|.+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~-~~~~~~~ 351 (377)
T TIGR00890 273 MSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAG-IFGGLIA 351 (377)
T ss_pred hhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHH-HHHHHHH
Confidence 66677777776665542 2222 233455677888888888888999999999999999999999999999 5899999
Q ss_pred HHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHH
Q 014716 357 GYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGC 392 (420)
Q Consensus 357 g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~ 392 (420)
|.+.|..| |+..|++.++++++++
T Consensus 352 g~l~~~~g------------~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 352 SHALTEIG------------FEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHhhhc------------hhhHHHHHHHHHHHhc
Confidence 99999888 9999998887777654
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-16 Score=155.87 Aligned_cols=170 Identities=15% Similarity=0.113 Sum_probs=129.4
Q ss_pred HHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHH
Q 014716 210 LLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSV 289 (420)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~ 289 (420)
..+...++.....+....++|.+.++.|++..+.+...+...++..+++++.|+++||+ +|+..+.+..+..++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~~~~~~~~~~~~~~ 297 (406)
T PRK11551 224 LLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL------RPRRVVLLIYAGILA 297 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHH
Confidence 33333444334445567788999999999999999999999999999999999999999 444555555555555
Q ss_pred HHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCC
Q 014716 290 GHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEG 368 (420)
Q Consensus 290 ~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~ 368 (420)
+.+.+. ..+...+.+..++.|++.++.++..++++.|.+|+++||++.|+.+....+|. .++|.+.|.+.|..++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~-~~g~~~~g~l~~~~~~--- 373 (406)
T PRK11551 298 SLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGS-MAGPLLAGQLLALGRS--- 373 (406)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHH-HHHhhhHhhhhccCCc---
Confidence 554444 33344455666778888888888899999999999999999999999999998 5899999999987664
Q ss_pred CccccccccHHHHHHHHHHHHHHHHHHHH
Q 014716 369 NSCNGTHCFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 369 ~~c~g~~~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
|...+++...+.+++.++.+.
T Consensus 374 --------~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 374 --------TVGVIGASIPVILVAALAALL 394 (406)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHH
Confidence 667777776666666655443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-16 Score=154.30 Aligned_cols=177 Identities=11% Similarity=0.056 Sum_probs=131.7
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhH
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 278 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~ 278 (420)
.+.+|++.+|..+...++..........+++.+.++ .|++..+++++.+...+++.+++++.|+++||+ +|+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~------~~~~ 272 (390)
T PRK03545 199 PLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH------PSGF 272 (390)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc------chhH
Confidence 456788888776665555444444445566666666 499999999999999999999999999999998 4444
Q ss_pred HHHHHHHHHHHHHHHH-H-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHH
Q 014716 279 FIAITLATMSVGHIVV-A-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRII 356 (420)
Q Consensus 279 ~~~i~~~~~~~~~l~l-~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~ 356 (420)
.. ++..+..++...+ . ..+...+.+..++.|++.+...+...+.+.+..| +.+|++.|+.+....+|. ..||.+.
T Consensus 273 ~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~-~~G~~~~ 349 (390)
T PRK03545 273 LL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGI-GAGALLG 349 (390)
T ss_pred HH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 33 3333344443332 2 3334456667778888887776777788888776 688999999988888888 5899999
Q ss_pred HHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 014716 357 GYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 357 g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
|.++|..| ++..|++.+.+.+++++....
T Consensus 350 G~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 350 NQVSLHLG------------LSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHHhccC------------hhHHHHHHHHHHHHHHHHHHH
Confidence 99999988 999999998888887766543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-16 Score=153.47 Aligned_cols=176 Identities=13% Similarity=0.043 Sum_probs=128.4
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhH
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 278 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~ 278 (420)
.+++++++.+|.+.+..++.....+.+.+|+|+++++.|++.. ++...++..+...++ .++++||..||+ .|+.
T Consensus 185 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~--~r~~ 258 (368)
T TIGR00903 185 FGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAG--LRSI 258 (368)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhh--hHHH
Confidence 4678899999999999999988888999999999998888754 555555555544444 589999987652 2333
Q ss_pred HHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHH
Q 014716 279 FIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIG 357 (420)
Q Consensus 279 ~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g 357 (420)
.......+.++..+.+. ..+.........+.+++....++..+++.+|.+|++.||++.|+.+..+.+|+ +.+|++.+
T Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~-~~~~~~~~ 337 (368)
T TIGR00903 259 YIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAIS-VALALAAM 337 (368)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHH-HHHHHHHH
Confidence 33333444444443333 22233334455556777777777888999999999999999999999999998 57788888
Q ss_pred HHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHH
Q 014716 358 YIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 395 (420)
Q Consensus 358 ~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~ 395 (420)
.+.. + ....|.+.++..+++.+..
T Consensus 338 ~~~~--~------------~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 338 LFIS--S------------AEAYFTFLAILITIAFAIA 361 (368)
T ss_pred HHhc--C------------HHHHHHHHHHHHHHHHHHH
Confidence 7773 3 6678888888888877664
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.8e-17 Score=162.56 Aligned_cols=184 Identities=19% Similarity=0.291 Sum_probs=163.0
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
+++++++.|+.+.+...+...........+|.+.++.|+++.+++.++++.++.+.+||++.|+++|+... .+++.
T Consensus 292 ~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~----~~~~~ 367 (509)
T KOG2504|consen 292 LSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGI----RALVL 367 (509)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcccc----chHHH
Confidence 68899999999999999998888888999999999999999999999999999999999999999999842 35566
Q ss_pred HHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHH
Q 014716 280 IAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGY 358 (420)
Q Consensus 280 ~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~ 358 (420)
..+++++.+++.+.+. ..+...+....+++|++.|.+.+..+.++.|+.+.++...++|+..+.+.++. +.+|++.|.
T Consensus 368 ~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~-l~gpPiag~ 446 (509)
T KOG2504|consen 368 FLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGA-LVGPPIAGL 446 (509)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHH-HcCccccee
Confidence 7777777777776555 56667788999999999999999999999999999999999999999999999 689999999
Q ss_pred HHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 359 IYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 359 l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
++|.+++ |...|+.++++.+++.++.+...
T Consensus 447 ~~d~tg~-----------Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 447 LYDITGN-----------YDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eeeccCC-----------eeeehhhcChHHHHHHHHHHHhH
Confidence 9999997 99999999998888886655444
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=157.40 Aligned_cols=186 Identities=10% Similarity=-0.036 Sum_probs=136.8
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhH
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 278 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~ 278 (420)
+..++++.++..++..++... ...+..++|.+.++ .|.++...+++.+...++..++.++.|+++||. +++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~------~~~~ 290 (417)
T PRK10489 218 RFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA------RPGL 290 (417)
T ss_pred HHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc------Ccch
Confidence 445677777665554444322 23456678888888 699999999999999999999999999999885 4444
Q ss_pred HHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHH
Q 014716 279 FIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIG 357 (420)
Q Consensus 279 ~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g 357 (420)
.+..+..+.+++.+++. ..+.....+..++.|++.+...+...+++.+.+|++.||++.|+.+....+|. .+++.+.|
T Consensus 291 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~-~~g~~l~G 369 (417)
T PRK10489 291 LMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGD-AIGAALLG 369 (417)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhH-hHHHHHHH
Confidence 55556666666666555 33333455667778888887777788899999999999999999999999998 58999999
Q ss_pred HHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 014716 358 YIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRF 405 (420)
Q Consensus 358 ~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~ 405 (420)
.+.|..| ++..+++.+++.++..++.....++.|+.
T Consensus 370 ~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (417)
T PRK10489 370 GLGAMMT------------PVASASASGFGLLIIGVLLLLVLGELRRF 405 (417)
T ss_pred HHHHHhc------------hhhHHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999888 66777777666655554444444454443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-16 Score=157.40 Aligned_cols=163 Identities=13% Similarity=0.155 Sum_probs=115.2
Q ss_pred hcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHH---H
Q 014716 218 GMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHI---V 293 (420)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l---~ 293 (420)
.....+.+..++|.++++ .|++..+.++..+...++..++.++.|+++||+ +||..+.++.++..+..+ .
T Consensus 262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------grr~~~~~~~~~~~~~~~~~~~ 335 (490)
T PRK10642 262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF------GRRPFVILGSVALFVLAIPAFI 335 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHH
Confidence 344556677789998865 499887778777888899999999999999999 555656555543332222 1
Q ss_pred HH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccc
Q 014716 294 VA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCN 372 (420)
Q Consensus 294 l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~ 372 (420)
.. ..+...+++..++.|++.+...+....+++|.+|++.||++.|+.+....+++ .++|.+.|++.+..++
T Consensus 336 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g-~~~p~i~g~l~~~~~~------- 407 (490)
T PRK10642 336 LINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVA-GLTPTLAAWLVESTQN------- 407 (490)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCC-------
Confidence 22 22233455667777888777778888899999999999999998533344555 3679999999887664
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 373 GTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 373 g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
|+.++++..+.++++++..+++
T Consensus 408 ----~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 408 ----LMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred ----chHHHHHHHHHHHHHHHHHHHh
Confidence 6667766666666666554443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=161.46 Aligned_cols=176 Identities=15% Similarity=0.076 Sum_probs=112.1
Q ss_pred ccchhhhccHHHHHHHcCCCccchhH------------HHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHH
Q 014716 220 GSGLATVNNISQIGESLGYPTSAINS------------LVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATM 287 (420)
Q Consensus 220 ~~~~~~~~~~~~~~~~~g~s~~~~~~------------~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~ 287 (420)
...++...+.|.+.++.|++..+++. ...+..++..++.+++++++||+ +||..+.++..+.
T Consensus 302 ~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~------gRR~~l~~~~~~~ 375 (502)
T TIGR00887 302 IAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII------GRKPIQLMGFFIL 375 (502)
T ss_pred HHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------cchhHHHHHHHHH
Confidence 34455677899999988987553221 23344556677889999999999 6666666676666
Q ss_pred HHHHHHHH--hc--Cchh-HHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHh
Q 014716 288 SVGHIVVA--SG--FPGN-LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN 362 (420)
Q Consensus 288 ~~~~l~l~--~~--~~~~-l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~ 362 (420)
+++++++. .. +... +....+...++..+..+..+.+.+|.+|++.|+++.|+.+..+.+|+ +++|.+.+.+.|.
T Consensus 376 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~-~~~~~~~~~l~~~ 454 (502)
T TIGR00887 376 TVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGA-IIGQFGFLYLAQH 454 (502)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHH-HHHHHHhhhhhcc
Confidence 66555443 11 1111 11111111222223445677888999999999999999999999999 5889999999885
Q ss_pred hcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 014716 363 VASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRF 405 (420)
Q Consensus 363 ~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~ 405 (420)
.+.... . +....+..+|++++++++++.+.. ++.+++|++
T Consensus 455 ~~~~~~-~-~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~ 494 (502)
T TIGR00887 455 GDPTKG-Y-PTGIWMGHVLEIFALFMFLGILFT-LLIPETKGK 494 (502)
T ss_pred cccccc-c-cccccchHHHHHHHHHHHHHHHHh-eEeccCCCC
Confidence 421000 0 000014567888888888776654 344666654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-15 Score=146.58 Aligned_cols=174 Identities=13% Similarity=0.149 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 284 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~ 284 (420)
+.+|...+..++.....+.+..++|.|+++. |++..+++.+.+.+.++..+|+++.|+++||+ +|+..+....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~------~~~~~l~~~~ 278 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF------DLQRILTVLA 278 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh------chhhHHHHHH
Confidence 4667777777766666667788999999655 99999999999999999999999999999999 4444455555
Q ss_pred HHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhh
Q 014716 285 ATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV 363 (420)
Q Consensus 285 ~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~ 363 (420)
.+.++...++. ..+...+.+..++.|++.+..++...+...+..+ +.+++..|..+....+|. .++|.+.|.+.|..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~-~i~p~~~G~l~~~~ 356 (394)
T PRK03699 279 GLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGT-MLTFVVTSPIVAHF 356 (394)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHH-HHHHHHHHHHHHHh
Confidence 45455444443 3344445566777888888888888888888776 456788888888888998 58999999999988
Q ss_pred cCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 364 ASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 364 g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
| ++.++++.+++++++.+..+.+.
T Consensus 357 g------------~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 357 G------------LQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred C------------chhhhhhhHHHHHHHHHHHHHHH
Confidence 8 88999988888888876554443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-16 Score=163.47 Aligned_cols=137 Identities=15% Similarity=0.183 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHH
Q 014716 247 VSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITY 325 (420)
Q Consensus 247 ~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~ 325 (420)
..+..++.++|.+++|+++||+ +||.++.++.++.+++++++. ..+...+++..++.|++.++.++...++++
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~------GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~a 674 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKI------GRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTV 674 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788899999999999999 777888888888888877665 333444556666778888888899999999
Q ss_pred HhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014716 326 EIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRR 404 (420)
Q Consensus 326 ~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~ 404 (420)
|++|++.||+++|+.+....+|+ +++|++.|.+.+. + ...+|++++++.++++++.+++ +++++
T Consensus 675 El~Pt~~Rgta~Gi~~~~~rlGa-iigp~i~g~L~~~-~------------~~~pf~i~a~~lll~~ll~~~L-PET~~ 738 (742)
T TIGR01299 675 ELYPSDKRATAFGFLNALCKAAA-VLGILIFGSFVGI-T------------KAAPILFASAALACGGLLALKL-PDTRG 738 (742)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh-h------------hHHHHHHHHHHHHHHHHHHHhC-CCCcc
Confidence 99999999999999999999999 6899999988764 2 4578888888777776665544 55543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=158.73 Aligned_cols=187 Identities=12% Similarity=0.093 Sum_probs=132.7
Q ss_pred cHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCCh
Q 014716 198 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 276 (420)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r 276 (420)
.+++.++++.+|..++..++.....+.+..++|.|+++. |++..++++..++..++..++.+++|+++||+.+|+...+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~ 332 (465)
T TIGR00894 253 PIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSL 332 (465)
T ss_pred CHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 457889999999999998888877788888999998765 9999999999999999999999999999999987654233
Q ss_pred hHH----HHHHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHH
Q 014716 277 PSF----IAITLATMSVGHIVVAS-G-FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYV 350 (420)
Q Consensus 277 ~~~----~~i~~~~~~~~~l~l~~-~-~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 350 (420)
+.. ..++..+.++..+.... . +.....+...+.+.+.+...+.......|..| +.+|+..|+.+..+.+|+ .
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~-~ 410 (465)
T TIGR00894 333 TAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGG-L 410 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHH-H
Confidence 222 12221111222222221 2 22223333444455555444555555556666 589999999999999999 5
Q ss_pred hhhHHHHHHHHhh--cCCCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 014716 351 CSVRIIGYIYDNV--ASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 351 ~~~~l~g~l~~~~--g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
++|.+.|.+.|.. +. |...|.+.+++++++.++...
T Consensus 411 i~p~l~g~~~~~~~~~~-----------~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 411 IASTLAGNILSQDSKNV-----------WLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHhhheeeCCCCchH-----------HHHHHHHHHHHHHHHHHHeee
Confidence 7899999888754 22 889999998888888766543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-16 Score=157.72 Aligned_cols=179 Identities=13% Similarity=0.086 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 285 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~ 285 (420)
+.++..++..+..........++.|++.++.|++..++++......++.+++++++|+++||+ +||..+.++..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~------~~~~~~~~~~~ 357 (481)
T TIGR00879 284 RLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF------GRRPLLLIGAA 357 (481)
T ss_pred HHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh------cchHHHHHHHH
Confidence 344555555554444445567778888888899988888888999999999999999999999 55556666666
Q ss_pred HHHHHHHHHH---h--cC------chhHHHHHHHHHHhhhh-hhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhh
Q 014716 286 TMSVGHIVVA---S--GF------PGNLYVGSIIVGVCYGC-QWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 353 (420)
Q Consensus 286 ~~~~~~l~l~---~--~~------~~~l~~~~~l~G~~~g~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 353 (420)
+.+++.+++. . .. .........+.+.+.+. ..+....++.|.+|++.||++.|+.+....+|+ +++|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~-~i~~ 436 (481)
T TIGR00879 358 GMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLAN-FIVG 436 (481)
T ss_pred HHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHH-HHHH
Confidence 6666655543 1 11 11222233333333333 345666777999999999999999999999999 5889
Q ss_pred HHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014716 354 RIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTR 403 (420)
Q Consensus 354 ~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~ 403 (420)
.+.|.+.++.+ |++.|++.++++++++++...+.+++|
T Consensus 437 ~~~~~~~~~~~------------~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 437 FLFPTMLESIG------------VGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHhcC------------ccceehhHHHHHHHHHHHHheecccCC
Confidence 99999999877 889999999888888777655444443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-14 Score=141.62 Aligned_cols=186 Identities=11% Similarity=0.041 Sum_probs=141.7
Q ss_pred HHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHH
Q 014716 201 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 280 (420)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~ 280 (420)
+.++++++|.+.+..++.........+++|.+++++|.+..+++...+++.+++.+|+++.|++.||+ +|+..+
T Consensus 200 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~------~~~~~~ 273 (393)
T PRK09705 200 RVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQ------DRRKLL 273 (393)
T ss_pred ccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc------cchHHH
Confidence 34567778877777766666666788899999998999999999999999999999999999999999 555556
Q ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhC-CCchHHHHHHHHHHhhhHHHHhhhHHHHHH
Q 014716 281 AITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFG-VGHMGTIFNTIAIASPVGSYVCSVRIIGYI 359 (420)
Q Consensus 281 ~i~~~~~~~~~l~l~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l 359 (420)
.++..+.+++.+++............++.|++.+..++.......+.++ ++++|+.+|+.+....++. .++|.+.|++
T Consensus 274 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~-~~gp~~~G~l 352 (393)
T PRK09705 274 MLALVLQLVGFCGFIWLPLQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIA-GLAPWFSGVL 352 (393)
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 6666666666554431111111223445688888887777777777775 5678999999999999988 5899999999
Q ss_pred HHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014716 360 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRR 404 (420)
Q Consensus 360 ~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~ 404 (420)
.|..|+ |...|++.+++++++.++...+.++++.
T Consensus 353 ~~~~g~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK09705 353 RSISGN-----------YLMDWAFHALCVVGLMIITLRFAPARFP 386 (393)
T ss_pred HHHhCC-----------chHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999886 8899999888888877766655555444
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.7e-15 Score=146.32 Aligned_cols=154 Identities=12% Similarity=0.151 Sum_probs=121.2
Q ss_pred hhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchhH
Q 014716 224 ATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNL 302 (420)
Q Consensus 224 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~l 302 (420)
....+++.+.++.|.+ ..+...+.+.++..+++++.|++.||+ +++..+.++..+.+++.+++. ..+...+
T Consensus 234 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (399)
T PRK05122 234 TIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRL------GGLRVAIVSLLVEILGLLLLWLAPSPWMA 305 (399)
T ss_pred HHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3445667777777763 456677888899999999999999999 555566666666666666555 3444456
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHH
Q 014716 303 YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFL 382 (420)
Q Consensus 303 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~ 382 (420)
.+..++.|++.+..++.....+.+.+|++++|+++|+.+....+|. .+++.+.|.+.|..| |+..|+
T Consensus 306 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~~~~~~~g~l~~~~g------------~~~~~~ 372 (399)
T PRK05122 306 LIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSL-GITGPLAGLVASWFG------------YPSIFL 372 (399)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcC------------HHHHHH
Confidence 6667888999988888888888899999999999999999999998 477889999999887 999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 014716 383 IMASVAFVGCLVAFLL 398 (420)
Q Consensus 383 i~~~~~~~~~~~~~~~ 398 (420)
+.++++++++++...+
T Consensus 373 ~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 373 AAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9988888877665443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-15 Score=145.47 Aligned_cols=179 Identities=10% Similarity=0.016 Sum_probs=133.6
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
++.+|++.+|...+..++.....++..++.|.+.++.|++..+.+...+...+++.++++..|+++||+++|+ ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~-----~~ 290 (402)
T TIGR00897 216 TILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN-----TV 290 (402)
T ss_pred HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-----HH
Confidence 5678899999888777777666677888999999989999988888888999999999999999999995332 22
Q ss_pred HHHHHHHHHHHHHHHH---h---cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhh
Q 014716 280 IAITLATMSVGHIVVA---S---GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 353 (420)
Q Consensus 280 ~~i~~~~~~~~~l~l~---~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 353 (420)
...+.+..+++.+.+. . .+....++..++.|++.+...+ ....+.+.. +++||+++|+.+....+|. .++|
T Consensus 291 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~-~~gp 367 (402)
T TIGR00897 291 RWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSA-FLAP 367 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHH-HHHH
Confidence 2222222222222211 1 1223345667778888776544 445666654 5689999999999999999 5899
Q ss_pred HHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 354 RIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 354 ~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
.+.|.+.|..| |..+|++.+++.+++.++..++
T Consensus 368 ~i~g~l~~~~g------------~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 368 AIAVLFIGFFG------------AIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHhhcc------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999888 8899999998888877765544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-15 Score=147.96 Aligned_cols=159 Identities=13% Similarity=0.116 Sum_probs=113.9
Q ss_pred HHHHhhCHHHHHHHHHHH---HhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCC
Q 014716 199 ILQSVCTLNFWLLFVAML---CGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWE 275 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~ 275 (420)
.++.++++.++....... +..+..+.+..++|.+.++.|++....+...+...++..+++++.|+++||+ +
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~------~ 294 (426)
T PRK12307 221 MKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI------G 294 (426)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------c
Confidence 466778877765443322 2233333456788999988899988889889999999999999999999999 5
Q ss_pred hhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHh--hhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhh
Q 014716 276 RPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVC--YGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCS 352 (420)
Q Consensus 276 r~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~--~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~ 352 (420)
|+..+..+.++.++..+.+. ........+..+++|++ ..+..+..+.++.|.+|++.+|++.|+.+....+|+ .++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~-~~g 373 (426)
T PRK12307 295 LKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSG-TFN 373 (426)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHH-HHH
Confidence 55666666655555544433 22222222333344433 233456677888999999999999999998889998 589
Q ss_pred hHHHHHHHHhhc
Q 014716 353 VRIIGYIYDNVA 364 (420)
Q Consensus 353 ~~l~g~l~~~~g 364 (420)
|.+.|.+.|..|
T Consensus 374 p~~~g~l~~~~g 385 (426)
T PRK12307 374 SMAATWLGITMG 385 (426)
T ss_pred HHHHHHHHHccc
Confidence 999999999877
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=142.17 Aligned_cols=175 Identities=10% Similarity=-0.009 Sum_probs=146.4
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhH
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 278 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~ 278 (420)
..+.+|++++|...+..++.......+..+.|.+.++.|.++...+...+...++..++.+++|++.||+ +.+.
T Consensus 198 ~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~------g~~~ 271 (382)
T TIGR00902 198 FIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNC------SARD 271 (382)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC------CHHH
Confidence 4678899999999888888777777788899999999999999999998888888899999999999998 5666
Q ss_pred HHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHH-HHhhhHHHHhhhHHH
Q 014716 279 FIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIA-IASPVGSYVCSVRII 356 (420)
Q Consensus 279 ~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~~~~~~l~ 356 (420)
.+.++.+...+...++. .++...++...++.|+++|...+....++.+. |++++++..++.+ +...+|. .+++.++
T Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~-~~g~~~~ 349 (382)
T TIGR00902 272 LLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLI-AIFTAFA 349 (382)
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 77788888888877766 45556677778899999999999999999988 8889999999986 5677888 5889999
Q ss_pred HHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 014716 357 GYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 357 g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
|.++|+.| + ..|++.+++.++++++
T Consensus 350 G~l~~~~g------------~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 350 GFIYPTLG------------A-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHhcc------------H-HHHHHHHHHHHHHHHH
Confidence 99999987 5 6688887777766543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.9e-15 Score=148.68 Aligned_cols=151 Identities=11% Similarity=0.050 Sum_probs=110.3
Q ss_pred chhhhccHHHHHH-HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCc
Q 014716 222 GLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFP 299 (420)
Q Consensus 222 ~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~ 299 (420)
......++|.+++ +.|++..+++++.+...++..+++++.|+++||+ +|+..+.++..+..+..+.+. ....
T Consensus 291 ~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~------g~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (496)
T PRK03893 291 SWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL------GTRKAYVCSLLISQLLIIPVFAIGGA 364 (496)
T ss_pred cchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHhhcccc
Confidence 3446678899996 6699999999999999999999999999999999 444555555555554444333 2222
Q ss_pred h--hHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCcccccccc
Q 014716 300 G--NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCF 377 (420)
Q Consensus 300 ~--~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~ 377 (420)
. .+....++.++...+..+..++++.|.+|++.+|+++|+.+....+|. .++|.+.|.+.|+.| |
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~-~lgp~l~g~l~~~~g------------~ 431 (496)
T PRK03893 365 NVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGG-ALAPILGALIAQRLD------------L 431 (496)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHH-HHHHHHHHHHhccCC------------h
Confidence 1 222333333333334456778899999999999999999998889998 589999999999888 8
Q ss_pred HHHHHHHHHHHHHH
Q 014716 378 MLSFLIMASVAFVG 391 (420)
Q Consensus 378 ~~~f~i~~~~~~~~ 391 (420)
+..+...++.+.+.
T Consensus 432 ~~~~~~~~~~~~~~ 445 (496)
T PRK03893 432 GTALASLSFSLTFV 445 (496)
T ss_pred HHHHHHHHHHHHHH
Confidence 87776655544443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-14 Score=144.62 Aligned_cols=179 Identities=12% Similarity=0.061 Sum_probs=123.2
Q ss_pred HhhCHHHHHHHH-HHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 202 SVCTLNFWLLFV-AMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 202 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
.+++++.|...+ ..++.....+....+.|.+.++ .|++.........+..+..+++.++.|+++||++ ||..
T Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~g------rr~~ 318 (438)
T PRK09952 245 LLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFG------RRRV 318 (438)
T ss_pred HHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------chHH
Confidence 556666666543 3344444455566788888764 4888765555556677788899999999999994 4444
Q ss_pred HHHHHHHHHHHHHHHH----hcCch-hHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHH-HHHhhhHHHHhhh
Q 014716 280 IAITLATMSVGHIVVA----SGFPG-NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTI-AIASPVGSYVCSV 353 (420)
Q Consensus 280 ~~i~~~~~~~~~l~l~----~~~~~-~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~~~~~ 353 (420)
+..+.++.+++.+.+. ..+.. .+.+..++.+++.+...+..+++++|.+|++.|+++.|+. +++..+|+ .++|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg-~~~p 397 (438)
T PRK09952 319 YITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGG-GFTP 397 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHH-HHHH
Confidence 5555444444332221 11222 2334455667888888888999999999999999999996 45566787 5889
Q ss_pred HHHHHHHHhhc-CCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 354 RIIGYIYDNVA-SGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 354 ~l~g~l~~~~g-~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
.+.|.+.|..+ + |...+.+.+++.+++++..+.+
T Consensus 398 ~i~g~l~~~~~~~-----------~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 398 FIAAALVTYFGGS-----------WHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHhcCCC-----------chHHHHHHHHHHHHHHHHHHHc
Confidence 99999998653 3 8888888888888777665433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-15 Score=141.85 Aligned_cols=185 Identities=15% Similarity=0.181 Sum_probs=145.8
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
.+..+++++.|.+.+.++..+++..++..++|.|+++. |.+..+++.+.....+.+.+.|+.+|++|||+| ++|
T Consensus 211 ~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~G-----g~r 285 (417)
T COG2223 211 LKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIG-----GRR 285 (417)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhcc-----chh
Confidence 35677899999999999999999999999999999977 999999999999999999999999999999996 444
Q ss_pred HHHHHHHHHHHHHHHHHH-hc-------CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHH
Q 014716 278 SFIAITLATMSVGHIVVA-SG-------FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSY 349 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~-~~-------~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 349 (420)
. +.+....++++...+. .. +........+..+++.|.-......+++.+|+ ++.|...|+....+.+|+.
T Consensus 286 v-~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf 363 (417)
T COG2223 286 V-TLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGF 363 (417)
T ss_pred H-HHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhcccccc
Confidence 4 4444455555555444 11 12223333444555556555566677777776 4789999999999999995
Q ss_pred HhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014716 350 VCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRT 402 (420)
Q Consensus 350 ~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~ 402 (420)
+-|...|..+|.+|+ |...|+++..+.+++.++.+..+.|+
T Consensus 364 -~lp~~~g~~~~~tg~-----------~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 364 -FLPLAFGVSLDLTGS-----------YTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred -chhHHHHHHHHhccc-----------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 669999999999997 99999999999999988776665444
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.2e-16 Score=154.49 Aligned_cols=186 Identities=17% Similarity=0.174 Sum_probs=130.3
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCC-Ch
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW-ER 276 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~-~r 276 (420)
+++.++++++|.+++..++.......+.+++|.++++. |++..+++.+.+++.+++.++++++|+++||++||+.. +|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r 324 (476)
T PLN00028 245 LRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGR 324 (476)
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchh
Confidence 46678889999888877766666666777888887654 99999999999999999999999999999999987532 34
Q ss_pred hHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHH
Q 014716 277 PSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRI 355 (420)
Q Consensus 277 ~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l 355 (420)
+....+...+.++..+++. ..+.....+..++.+++.+...+...+++.+.. ++.+|+++|+.+.+..+|+. +++.+
T Consensus 325 ~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~-i~~~l 402 (476)
T PLN00028 325 LWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAV-LTQLL 402 (476)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHH-HHHHH
Confidence 4555555555444444433 222233344455666666555555666666654 47899999999888777773 44444
Q ss_pred HHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 356 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 356 ~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
.+ .+..++ |+..|++.+++.+++.++.++.+
T Consensus 403 ~~--~~~~~~-----------y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 403 FF--TGSSYS-----------TETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HH--hcCCcc-----------HhhHHHHHHHHHHHHHHHHHhee
Confidence 33 111222 88999999988888887766553
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-15 Score=146.25 Aligned_cols=162 Identities=14% Similarity=0.155 Sum_probs=119.7
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
.++.++++.+|...+..++.......+..+.|.+.++. |+++.+++...+...+++.+++++.|+++||..+++ |.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~---~~ 285 (379)
T TIGR00881 209 LQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGR---RG 285 (379)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc---ch
Confidence 46678899999988888877776677788889888754 999999999999999999999999999999875432 22
Q ss_pred HHHHHHHHHHHHHHHHHHh---cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhH
Q 014716 278 SFIAITLATMSVGHIVVAS---GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 354 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 354 (420)
...........++...+.. .+.....+..++.|++.+...+....+..|.+|++.||++.|+.+....+|. .++|.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~~~~~ 364 (379)
T TIGR00881 286 PLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGG-ILAGL 364 (379)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhh-hhhhh
Confidence 2222222222222222221 1222344555566766556666677889999999999999999999999999 58999
Q ss_pred HHHHHHHhhc
Q 014716 355 IIGYIYDNVA 364 (420)
Q Consensus 355 l~g~l~~~~g 364 (420)
+.|.+.|..|
T Consensus 365 ~~g~l~~~~g 374 (379)
T TIGR00881 365 PLGYLADGFG 374 (379)
T ss_pred hHHHHHHhhc
Confidence 9999999887
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=143.87 Aligned_cols=176 Identities=18% Similarity=0.261 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 285 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~ 285 (420)
...+.+.++.|+.....+.....+|++.+|+|.|...+|+.++.+.++..++.|+...++||+ +||.++...+.
T Consensus 13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~------~Rr~lLl~~l~ 86 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL------ERRRLLLGLLA 86 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc------chHHHHHHHHH
Confidence 356677788888888889999999999999999999999999999999999999999999999 88899999999
Q ss_pred HHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhc
Q 014716 286 TMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 364 (420)
Q Consensus 286 ~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g 364 (420)
++.++.++.+ .++...+.+.+++.|+..|.++++..++.+++.|+++|+++.++++.+..++. ++|.+++.++-|..|
T Consensus 87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~-v~GvPLGt~ig~~~G 165 (394)
T COG2814 87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLAT-VLGVPLGTFLGQLFG 165 (394)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHH-HHhccHHHHHHHHhh
Confidence 9999999887 77888899999999999999999999999999999999999999999999999 799999999999999
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 014716 365 SGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFI 400 (420)
Q Consensus 365 ~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~ 400 (420)
||.+|++.+++++++.+..+...+
T Consensus 166 ------------WR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 166 ------------WRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999998877666555
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=146.47 Aligned_cols=159 Identities=14% Similarity=0.092 Sum_probs=128.2
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhh-ccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCCh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATV-NNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 276 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r 276 (420)
.++.+|++.+|...+..++......... .+.|++.++ .|.+..+.+...+...++..+++++.|+++||+ +|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~ 276 (365)
T TIGR00900 203 IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF------KR 276 (365)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ch
Confidence 3566788888887777766655555554 788888887 599999999999999999999999999999998 55
Q ss_pred hHHHHHHHHHHHHHHHHHH-hcC-chhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhH
Q 014716 277 PSFIAITLATMSVGHIVVA-SGF-PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 354 (420)
Q Consensus 277 ~~~~~i~~~~~~~~~l~l~-~~~-~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 354 (420)
+..+..+..+.+++.+.+. ..+ ...+.+..++.|++.+...+...+++.|.+|+++||+..|+.+....++. .++|.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~ 355 (365)
T TIGR00900 277 MALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAW-PLGLI 355 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 5666666666666655554 222 44566778888999999999999999999999999999999999999998 58999
Q ss_pred HHHHHHHhhc
Q 014716 355 IIGYIYDNVA 364 (420)
Q Consensus 355 l~g~l~~~~g 364 (420)
+.|.+.|..|
T Consensus 356 ~~g~l~~~~g 365 (365)
T TIGR00900 356 LAGPLADHLG 365 (365)
T ss_pred HHHHHHHHcC
Confidence 9999998754
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-14 Score=142.83 Aligned_cols=191 Identities=10% Similarity=0.032 Sum_probs=145.9
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCc--------cchhHHHHHHHHHHHHhHhhhhhhhHhHhhh
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPT--------SAINSLVSLWSIWNFLGRFGGGYVSDIVLHR 271 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--------~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~ 271 (420)
.+.+|++.+|.+.+..++............+.+.++.|.++ ...+...++..+..+++.+..|+++||+
T Consensus 202 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~--- 278 (418)
T TIGR00889 202 FILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF--- 278 (418)
T ss_pred HHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 56788899888877777765544445556677777777654 4558888899999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHh-c-Cc---hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHH-HHhh
Q 014716 272 MGWERPSFIAITLATMSVGHIVVAS-G-FP---GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIA-IASP 345 (420)
Q Consensus 272 ~~~~r~~~~~i~~~~~~~~~l~l~~-~-~~---~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~ 345 (420)
++|+.+.++.++.+++..++.. . +. ..+++..++.|++.+...+....++.|.+|+++||+++|+.+ ....
T Consensus 279 ---g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~ 355 (418)
T TIGR00889 279 ---GIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNG 355 (418)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh
Confidence 6667788888887777655543 2 11 234566778899988888888899999999999999999997 6778
Q ss_pred hHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014716 346 VGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTR 403 (420)
Q Consensus 346 ~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~ 403 (420)
+|. +++|++.|.++|+.+++ +...|+..|.+.+++++++.++..++.++.+
T Consensus 356 lg~-~iGp~l~G~l~~~~g~~------~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 356 FGS-LLGYILSGVMVEKMFAY------GTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred hHH-HHHHHHHHHHHHHhccc------cCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 898 58999999999986520 0112899999998888888777666655443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=149.12 Aligned_cols=169 Identities=18% Similarity=0.156 Sum_probs=121.3
Q ss_pred hhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc--CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHH
Q 014716 203 VCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL--GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 280 (420)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~ 280 (420)
++++.+|...+..++.......+.+++|.++++. |++..+++.+.+...++..+|+++.|+++||+++ |+..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~-----r~~~~ 313 (412)
T TIGR02332 239 IFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKE-----RKHHT 313 (412)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCc-----cHHHH
Confidence 3467889888888887777778889999999985 6677888889999999999999999999999953 23333
Q ss_pred HHHHHHHHHHHHHHHhc-CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHH
Q 014716 281 AITLATMSVGHIVVASG-FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 359 (420)
Q Consensus 281 ~i~~~~~~~~~l~l~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l 359 (420)
.+..++.+++.++.... +....+....+.+++.....+..+....|.+|++.||+++|+.+....+|. +++|.+.|.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~-~~~p~~~g~i 392 (412)
T TIGR02332 314 ALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGS-ALSPFLIGIL 392 (412)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhh-hhhhhhcccc
Confidence 33334444443322222 222122222333333333334444555678999999999999999999999 5899999999
Q ss_pred HHhhcCCCCCccccccccHHHHHHHHHHH
Q 014716 360 YDNVASGEGNSCNGTHCFMLSFLIMASVA 388 (420)
Q Consensus 360 ~~~~g~~~~~~c~g~~~~~~~f~i~~~~~ 388 (420)
.|..|+ |+..|++++++.
T Consensus 393 ~~~~g~-----------~~~~~~~~~~~~ 410 (412)
T TIGR02332 393 KDATGS-----------FNSGLWFVAALL 410 (412)
T ss_pred cccCCC-----------CchhHHHHHHHH
Confidence 998876 999988776544
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-14 Score=142.59 Aligned_cols=181 Identities=8% Similarity=-0.052 Sum_probs=117.4
Q ss_pred HHHHhhCHHHHHHHHHHHHh-cccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCCh
Q 014716 199 ILQSVCTLNFWLLFVAMLCG-MGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 276 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r 276 (420)
++++++++++|...+..++. ....+.+..++|.++++ .|++..+.+...++..+...++.++.|+++||++ |
T Consensus 235 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~g------r 308 (432)
T PRK10406 235 LKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIG------R 308 (432)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------c
Confidence 46778888888776655443 44556677889998875 5999888888888888888899999999999995 3
Q ss_pred hHHHHHHHHHHHHHHH-H-H-Hh-cCchhH-HHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhh-HHHH
Q 014716 277 PSFIAITLATMSVGHI-V-V-AS-GFPGNL-YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPV-GSYV 350 (420)
Q Consensus 277 ~~~~~i~~~~~~~~~l-~-l-~~-~~~~~l-~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~ 350 (420)
|..+.+..++.++..+ . . .. .+.... .....+.+++.+...+..+.+.+|.||++.|++++|+.+....+ .+ .
T Consensus 309 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g-~ 387 (432)
T PRK10406 309 RTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFG-G 387 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHH-h
Confidence 3434443333222221 1 1 11 111122 22222223344444566778899999999999999999755444 33 2
Q ss_pred hhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 351 CSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 351 ~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
..|.+.+ +.+..|+ |...+++.+++.+++++..+++
T Consensus 388 ~~p~~~~-~l~~~g~-----------~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 388 SAEYVAL-SLKSIGM-----------ETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHH-HHHHhCC-----------CcHHHHHHHHHHHHHHHHHHHh
Confidence 4677777 4466664 6667777777777766655443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-14 Score=140.90 Aligned_cols=173 Identities=10% Similarity=0.119 Sum_probs=123.8
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccH-HHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhH
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNI-SQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 278 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~ 278 (420)
++.+|++.+|...+..++..........+. |.+.++.|+++.+.+.......+++.+++++.|++.||. +++.
T Consensus 210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~------~~~~ 283 (394)
T PRK10213 210 FRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS------VKLA 283 (394)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc------chhH
Confidence 567788888887666555554444444454 677777799998999999999999999999999999985 3333
Q ss_pred HHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHH
Q 014716 279 FIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIG 357 (420)
Q Consensus 279 ~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g 357 (420)
.+....+......++.. ..+...+....++.|++++...+..++.+.+..| ++.+...+.......+|. .+|+.++|
T Consensus 284 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~-~~G~~l~G 361 (394)
T PRK10213 284 LAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLAN-TCGAAIGG 361 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 33333333333333322 3344456667788899999888888888888887 556777777777777888 58999999
Q ss_pred HHHHhhcCCCCCccccccccHHHHHHHHHHHHHHH
Q 014716 358 YIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGC 392 (420)
Q Consensus 358 ~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~ 392 (420)
.++|..| ++..++..+++.++..
T Consensus 362 ~l~~~~g------------~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 362 YALDNIG------------LTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHhccC------------hhhHHHHHHHHHHHHH
Confidence 9999887 7777777665554443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.6e-15 Score=140.53 Aligned_cols=169 Identities=21% Similarity=0.295 Sum_probs=139.5
Q ss_pred HHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhH-HHHHHHH
Q 014716 208 FWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS-FIAITLA 285 (420)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~-~~~i~~~ 285 (420)
+|...+..++.......+..+.|.+.++. |.+..+.+...+...++..+++++.|+++||+ +||. .+.++..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~ 250 (352)
T cd06174 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL------GRRRLLLLIGLL 250 (352)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhHHHHHHHH
Confidence 34444444555555556677788888876 88999999999999999999999999999999 4445 6777777
Q ss_pred HHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhc
Q 014716 286 TMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 364 (420)
Q Consensus 286 ~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g 364 (420)
+..++.+.+. ..+.....+..++.|++.+...+...+++.|.+|+++|++.+|+.+....+|. .+++.+.|.+.|..+
T Consensus 251 ~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~i~g~l~~~~~ 329 (352)
T cd06174 251 LAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGG-ALGPLLAGLLLDTGG 329 (352)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccC
Confidence 7777777666 34455677888889999999999999999999999999999999999999999 588999999998776
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHHHHHH
Q 014716 365 SGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 395 (420)
Q Consensus 365 ~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~ 395 (420)
|+..|++.+++++++.+..
T Consensus 330 ------------~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 330 ------------YGGVFLILAALALLAALLL 348 (352)
T ss_pred ------------cchHHHHHHHHHHHHHHHh
Confidence 8899999998888877654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.9e-15 Score=144.42 Aligned_cols=179 Identities=16% Similarity=0.148 Sum_probs=132.8
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc----CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCC
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL----GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWE 275 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~ 275 (420)
.+.+|++.+|.+.+..++..........+.|.+..+. +.+....+...++..++..++.+++|+++||++
T Consensus 217 ~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g------ 290 (420)
T PRK09528 217 LALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIG------ 290 (420)
T ss_pred HHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------
Confidence 5677888877665544444333333444566665543 455566788888889999999999999999994
Q ss_pred hhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHH-HHHHhhhHHHHhhh
Q 014716 276 RPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNT-IAIASPVGSYVCSV 353 (420)
Q Consensus 276 r~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~~~~ 353 (420)
++..+.++..+.+++.+++. ..++..++...++.|++.+........++.+.+|++.+++.++. .+....+|. ++++
T Consensus 291 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~-~ig~ 369 (420)
T PRK09528 291 AKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGA-VFLS 369 (420)
T ss_pred cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHH-HHHH
Confidence 44556666666666666555 44555666777788888887777778889999999999998876 577788888 5889
Q ss_pred HHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 014716 354 RIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 354 ~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
.+.|.+.|..| |+.+|.+.+++.++..++.+.
T Consensus 370 ~~~G~l~~~~G------------~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 370 TLAGNLYDSIG------------FQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHhhC------------chHHHHHHHHHHHHHHHHHHH
Confidence 99999999888 999999988887776655443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-13 Score=129.15 Aligned_cols=180 Identities=17% Similarity=0.196 Sum_probs=139.2
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
..+.+|++..|..++..++.....++..+++..++++. |++.+..++....++++.++|..++|+++|| + .|+
T Consensus 204 ~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~-----~~~ 277 (394)
T COG2814 204 LLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-G-----PRR 277 (394)
T ss_pred HHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-c-----chh
Confidence 37899999999999999999888888777777777777 9999999999999999999999999999999 4 333
Q ss_pred HHHHHHHHHHHHHHHHHH--hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHH
Q 014716 278 SFIAITLATMSVGHIVVA--SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRI 355 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~--~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l 355 (420)
. +.....++++..+.+. ..+........++.|+..+..........++ .-++....+.++.....++|. ..|..+
T Consensus 278 ~-l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgi-a~GA~l 354 (394)
T COG2814 278 A-LIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGI-ALGAAL 354 (394)
T ss_pred H-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHH-HHHHHH
Confidence 3 3334344444444443 2333334445555666666555555566666 446889999999999999998 488899
Q ss_pred HHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 356 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 356 ~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
+|.++|+.| |....++.+.+.++++++.++..
T Consensus 355 GG~v~~~~g------------~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 355 GGLVLDALG------------YAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred HHHHHHhhc------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 99999999999999887765543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-14 Score=143.75 Aligned_cols=167 Identities=13% Similarity=0.091 Sum_probs=119.8
Q ss_pred hhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-h--cCc-
Q 014716 224 ATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-S--GFP- 299 (420)
Q Consensus 224 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~--~~~- 299 (420)
...++.|.+.++.|++.....+......+.++++.+++|+++||+ +||..+..+.++++++.+++. . .+.
T Consensus 289 ~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~------g~r~~~i~~~~~~~v~~~~l~~~~~~~~~ 362 (479)
T PRK10077 289 VVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF------GRKPLQIIGALGMAIGMFSLGTAFYTQAP 362 (479)
T ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh------cChHHHHHhHHHHHHHHHHHHHHHhcCcc
Confidence 345667888888899887777777888899999999999999999 666777778877777776654 1 122
Q ss_pred h-hHHHHHHHHHHhhhhh-hhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHH------HhhcCCCCCcc
Q 014716 300 G-NLYVGSIIVGVCYGCQ-WSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIY------DNVASGEGNSC 371 (420)
Q Consensus 300 ~-~l~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~------~~~g~~~~~~c 371 (420)
. ......++++++.+.. .+..+.+++|.+|++.||++.|+.+....+|.. .++.+.+.+. |..+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~-~~~~~~p~~~~~~~~~~~~~------- 434 (479)
T PRK10077 363 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANY-FVSWTFPMMDKNSWLVAHFH------- 434 (479)
T ss_pred cHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHH-HHHHHhHHHHhccchhhhcc-------
Confidence 1 2233444555555543 356789999999999999999999888888873 5555555443 4444
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 014716 372 NGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQV 409 (420)
Q Consensus 372 ~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (420)
+...|++.++++++++++.+++.+++|++..++
T Consensus 435 -----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 467 (479)
T PRK10077 435 -----NGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE 467 (479)
T ss_pred -----CccHHHHHHHHHHHHHHHHHhccccCCCCCHHH
Confidence 678888888888887777666666666543333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-14 Score=143.92 Aligned_cols=181 Identities=12% Similarity=0.153 Sum_probs=125.5
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHH-HHcCCCccchhHHHH-HHHHHHHHhHhhhhhhhHhHhhhcCCCh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIG-ESLGYPTSAINSLVS-LWSIWNFLGRFGGGYVSDIVLHRMGWER 276 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~-~~~~~~~ig~~~~G~lsDr~~~~~~~~r 276 (420)
+++.++++.+|...+..++..........+.+.++ ++.|++..+.+.... ...++.++|.+++|+++||+++|
T Consensus 215 l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~----- 289 (491)
T PRK11010 215 LRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF----- 289 (491)
T ss_pred HHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----
Confidence 35566677777665555444433334444556665 456999999998875 55679999999999999999533
Q ss_pred hHHHHHHHHHHHHHHH---HHHhc--CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHh
Q 014716 277 PSFIAITLATMSVGHI---VVASG--FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVC 351 (420)
Q Consensus 277 ~~~~~i~~~~~~~~~l---~l~~~--~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 351 (420)
..+.++.++.++..+ .+... +...+....++..++.|...+...++.++..+++..++.+|+.+....+|.. +
T Consensus 290 -~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~-~ 367 (491)
T PRK11010 290 -RALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRV-Y 367 (491)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH-H
Confidence 334333333333222 22222 2222333455555555656666788899999999999999999999999984 6
Q ss_pred hhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 352 SVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 352 ~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
++.+.|.+.|..| |+..|.+.+++++.++++...+
T Consensus 368 ~~~~~G~l~~~~G------------~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 368 VGPVAGWFVEAHG------------WPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHhC------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999888 9999999999888887766554
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-14 Score=138.21 Aligned_cols=175 Identities=11% Similarity=0.085 Sum_probs=128.1
Q ss_pred HhhCHHHHHHHHHHHHhcccchhhhccHHHHHH-HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHH
Q 014716 202 SVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 280 (420)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~ 280 (420)
.++++++|..+...++.......+..++|.+.+ +.|.++.+.+.......+...+++++.|+++||+ +||..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~------g~~~~~ 268 (375)
T TIGR00899 195 LLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF------GKRRLM 268 (375)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh------cchhHH
Confidence 345556666555555444434445566777765 4599988888888877778888999999999999 444555
Q ss_pred HHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHH
Q 014716 281 AITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 359 (420)
Q Consensus 281 ~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l 359 (420)
.++.++..+..+.+. ..+...+....++.|++.|...+....++.|.+|. +++++.++.+....+|. .++|.+.|.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~-~~g~~~~g~~ 346 (375)
T TIGR00899 269 LLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGW-IIAGSVGGIL 346 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 555554444443333 33344455666777888888888888888998875 56799999998888998 5899999999
Q ss_pred HHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHH
Q 014716 360 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAF 396 (420)
Q Consensus 360 ~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~ 396 (420)
.|..| |+..|++.+++++++.++..
T Consensus 347 ~~~~g------------~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 347 AERWS------------YHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHhcc------------chhHHHHHHHHHHHHHHHHh
Confidence 99887 99999999888888776543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-14 Score=139.99 Aligned_cols=178 Identities=16% Similarity=0.128 Sum_probs=118.7
Q ss_pred HHhhCHHHHHHHHHHHHhcccchhhhccHHHHHH-HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 201 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
+.++++.+|..+...++.....+....+++.+.+ ..|+++.+.+++.+...++..+++++.|+++||+ +++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~------~~~~~ 267 (382)
T PRK10091 194 HFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY------SPLRI 267 (382)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc------CchhH
Confidence 4567777787766655544333333444555555 4599999999999999999999999999999999 44455
Q ss_pred HHHHHHHHHHHHHHHH--hcCchhHHHHHHHHHHhhhhhhhhHH-HHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHH
Q 014716 280 IAITLATMSVGHIVVA--SGFPGNLYVGSIIVGVCYGCQWSLMP-TITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRII 356 (420)
Q Consensus 280 ~~i~~~~~~~~~l~l~--~~~~~~l~~~~~l~G~~~g~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~ 356 (420)
+.++..+.+++.+++. ..+.....+..++.+++.+...++.. ....+..+.+.++.+. .+....+|. .+||.+.
T Consensus 268 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~-~~Gp~~~ 344 (382)
T PRK10091 268 AAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGS-AIGAYCG 344 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHH-HHHHHHh
Confidence 6666666666655443 22333344444555665554444333 3444545555555543 356677888 5899999
Q ss_pred HHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 357 GYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 357 g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
|.+.|.+++ |+..+.+.+++++++......+
T Consensus 345 G~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 345 GMMLTLGLA-----------YNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HHHHHcccC-----------cchHHHHHHHHHHHHHHHHHHH
Confidence 999997655 9999998887777766554443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=140.88 Aligned_cols=178 Identities=16% Similarity=0.092 Sum_probs=127.8
Q ss_pred HHhhCHHHHHHHHH-HHHhcccchhhhccHHHHHHHcCCCccc----hhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCC
Q 014716 201 QSVCTLNFWLLFVA-MLCGMGSGLATVNNISQIGESLGYPTSA----INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWE 275 (420)
Q Consensus 201 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~ 275 (420)
+.+++++++..++. .++.......+..+++.+.++.+.+..+ .+.+.+...++..++++..|+++||+ +
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~------g 286 (408)
T PRK09874 213 TSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI------G 286 (408)
T ss_pred HhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------c
Confidence 34555555543322 2222222233445667777766333222 34555667788899999999999999 5
Q ss_pred hhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhH
Q 014716 276 RPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 354 (420)
Q Consensus 276 r~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 354 (420)
|+..+.++..+..++.+.+. ..+...+++..++.|++.+...+...+.+.+..+++.+|+.+++.+....+|. .++|.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~-~~gp~ 365 (408)
T PRK09874 287 PEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGN-VTGPL 365 (408)
T ss_pred cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHH-HhhHH
Confidence 55556666666666555544 34445566677788999999988888999999999999999999999999998 58999
Q ss_pred HHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 014716 355 IIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 355 l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
+.|.+.|..+ |+..|++.+++.+++.+....
T Consensus 366 ~~G~l~~~~g------------~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 366 MGAAISANYG------------FRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHhhcc------------hhHHHHHHHHHHHHHHHHHHH
Confidence 9999999887 999999999888887766543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-14 Score=138.59 Aligned_cols=173 Identities=14% Similarity=0.115 Sum_probs=129.9
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
.+.++++.+|......++..........++|.+.++.|.+...++...+...++..++++..|+++||+ +++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------~~~~~ 267 (381)
T PRK03633 194 WPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRF------GRLLV 267 (381)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc------CcHHH
Confidence 456677777765444333332333445578999988899988899999999999999999999999999 55566
Q ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHH
Q 014716 280 IAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 359 (420)
Q Consensus 280 ~~i~~~~~~~~~l~l~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l 359 (420)
+.++..+..++.+.+. ..........+.|++.+...+...+.+.|..|+++++...+..+....+|. .++|.+.|.+
T Consensus 268 l~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~-~igp~~~G~l 344 (381)
T PRK03633 268 LRVQVFVVILGSIAML--SQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGS-LLGPSFTAML 344 (381)
T ss_pred HHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 6666666666554433 122334456667777777778888888899988888888888888899999 5899999999
Q ss_pred HHhhcCCCCCccccccccHHHHHHHHHHHHHHHH
Q 014716 360 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCL 393 (420)
Q Consensus 360 ~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~ 393 (420)
.|..+ +++.|.+.+.+.+++.+
T Consensus 345 ~~~~g------------~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 345 MQNYS------------DNLLFIMIASVSFIYLL 366 (381)
T ss_pred HHHhC------------ccHHHHHHHHHHHHHHH
Confidence 99887 88899887777765543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.9e-14 Score=137.06 Aligned_cols=152 Identities=15% Similarity=0.096 Sum_probs=119.2
Q ss_pred hhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchhH
Q 014716 224 ATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNL 302 (420)
Q Consensus 224 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~l 302 (420)
....+.+.+.++.|++ ..+...+...++..+++++.|++.||+++ +..+..+..+.+++.+++. ..+....
T Consensus 234 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (392)
T PRK12382 234 VIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGG------VKVAIVSLLVETVGLLLLWLAPTAWVA 305 (392)
T ss_pred HHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCC------CeehHHHHHHHHHHHHHHHHcccHHHH
Confidence 3455667777777765 35566677888889999999999999953 3445556666666665554 3334445
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHH
Q 014716 303 YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFL 382 (420)
Q Consensus 303 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~ 382 (420)
.+..++.|++.+...+...+.+.+.+|+++||++.|+.+....+|. .++|.+.|.+.|..| |+..|.
T Consensus 306 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~ig~~~~g~l~~~~g------------~~~~~~ 372 (392)
T PRK12382 306 LAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAY-GVSGPLAGMLATSFG------------YPSVFL 372 (392)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhC------------chHHHH
Confidence 6677788999888888888889999999999999999999999998 589999999999888 999999
Q ss_pred HHHHHHHHHHHHHH
Q 014716 383 IMASVAFVGCLVAF 396 (420)
Q Consensus 383 i~~~~~~~~~~~~~ 396 (420)
+.+++.+++.++.+
T Consensus 373 ~~~~~~~~~~~~~~ 386 (392)
T PRK12382 373 AGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888776654
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.7e-15 Score=146.24 Aligned_cols=170 Identities=17% Similarity=0.187 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHH
Q 014716 207 NFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT 286 (420)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~ 286 (420)
.++..++..++.......+...+|.+.+++|++..+.+++.+.+.++..+++++.|+++||+ +||..+.++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~------g~r~~~~~~~~~ 97 (434)
T PRK11663 24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS------NARYFMGIGLIA 97 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc------CCchhHHHHHHH
Confidence 44445555555555445667789999999999999999999999999999999999999999 666778888888
Q ss_pred HHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcC
Q 014716 287 MSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS 365 (420)
Q Consensus 287 ~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~ 365 (420)
.+++.++.. ..+...+.+..++.|++.|..++...+++.+.+|+++||++.|+.+.+..+|. ++++.+.+.+.+..+
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~-~~~~~~~~~l~~~~g- 175 (434)
T PRK11663 98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGG-ALIPLVVGAIALHYG- 175 (434)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccc-
Confidence 888877665 44555667777888999998888999999999999999999999999999999 588999999998877
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHHHHH
Q 014716 366 GEGNSCNGTHCFMLSFLIMASVAFVGCLVA 395 (420)
Q Consensus 366 ~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~ 395 (420)
|++.|++.++++++..+..
T Consensus 176 -----------w~~~f~~~~i~~~~~~~~~ 194 (434)
T PRK11663 176 -----------WRYGMMIAGIIAIVVGLFL 194 (434)
T ss_pred -----------HHHHHHHHHHHHHHHHHHH
Confidence 9999998887766554443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=150.37 Aligned_cols=185 Identities=13% Similarity=0.085 Sum_probs=139.3
Q ss_pred hCHHHHHHHHHHHHhcccc----hhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 204 CTLNFWLLFVAMLCGMGSG----LATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
..+..|.+++...+..... ..+...+|.+.++.|.+..+.+++.+.+.++.++|.+++|+++||+ +||..
T Consensus 161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~------GRR~~ 234 (742)
T TIGR01299 161 HGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL------GRKQC 234 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CcHHH
Confidence 3455665554444433222 2244567778788899999999999999999999999999999999 77777
Q ss_pred HHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHH
Q 014716 280 IAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGY 358 (420)
Q Consensus 280 ~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~ 358 (420)
+.+++++.+++.++.. ..+...++++.++.|++.|+..+..+++++|.+|++.||...++.+++..+|. ++++.++..
T Consensus 235 lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~-ila~~la~~ 313 (742)
T TIGR01299 235 LLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGG-IYAAAMAWA 313 (742)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 8888777777776665 45667788899999999999999999999999999999999999999999998 577777777
Q ss_pred HHHhhcCCC-CCccccccccHHHHHHHHHHHHHHHHHH
Q 014716 359 IYDNVASGE-GNSCNGTHCFMLSFLIMASVAFVGCLVA 395 (420)
Q Consensus 359 l~~~~g~~~-~~~c~g~~~~~~~f~i~~~~~~~~~~~~ 395 (420)
+....|-.. ....+....||+.|++.++.+++++++.
T Consensus 314 il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~ 351 (742)
T TIGR01299 314 IIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGAL 351 (742)
T ss_pred HHHhccchhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 765443110 0112233459998888777666655443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.5e-14 Score=137.34 Aligned_cols=195 Identities=11% Similarity=0.076 Sum_probs=142.7
Q ss_pred ccCcHHHHhhCHHH----HHHHHHHHHhcccc-hhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHh
Q 014716 195 EDMNILQSVCTLNF----WLLFVAMLCGMGSG-LATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVL 269 (420)
Q Consensus 195 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~ 269 (420)
++.+++++++++.. ++.+...++....+ ..+..+...+.++.|++..++.+.....++.+.+..+++.++.||+
T Consensus 254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~- 332 (485)
T KOG0569|consen 254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL- 332 (485)
T ss_pred cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 44677888887533 23333333333333 3455566677788899999999999999999999999999999999
Q ss_pred hhcCCChhHHHHHHHHHHHHHHHHHH----hcC---chh---HHHHHHHHHHhhhhh-hhhHHHHHHHhhCCCchHHHHH
Q 014716 270 HRMGWERPSFIAITLATMSVGHIVVA----SGF---PGN---LYVGSIIVGVCYGCQ-WSLMPTITYEIFGVGHMGTIFN 338 (420)
Q Consensus 270 ~~~~~~r~~~~~i~~~~~~~~~l~l~----~~~---~~~---l~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~~~g~~~g 338 (420)
|||+++.++..++.+..+++. ..+ .+. .+++.+++.++++.. .|+.+-+.+|+||++.|.++.+
T Consensus 333 -----gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s 407 (485)
T KOG0569|consen 333 -----GRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQS 407 (485)
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHH
Confidence 788888888888887766543 111 111 234444445555533 4667788999999999999999
Q ss_pred HHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 014716 339 TIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQV 409 (420)
Q Consensus 339 ~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (420)
+....+.+...+. ...+-.+.+..|. ..|+++.+.+++..+..+...++||++...+
T Consensus 408 ~~~~~~w~~~fiv-~~~fp~l~~~~g~-------------~~filF~i~~~~~~i~~~~~lPETkgr~~~e 464 (485)
T KOG0569|consen 408 VATAVNWLSNFIV-GFAFPPLQNVIGP-------------YVFILFVIPLAIFLIYLYRYLPETKGRTPYE 464 (485)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhcc-------------hhhHHHHHHHHHHHHHHHHhCcccCCCCHHH
Confidence 9999999998644 5777788887774 7788888888888887777788998764443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-14 Score=138.86 Aligned_cols=184 Identities=17% Similarity=0.180 Sum_probs=133.1
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhH
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 278 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~ 278 (420)
.++.+|+++.|++.+.+++.++...++..++|++.++ .++.........+..+...+.|+++|+++||+ +++.
T Consensus 245 ~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRi------G~~~ 317 (462)
T PRK15034 245 QLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKF------GGVR 317 (462)
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhc------CchH
Confidence 3678999999999999999999988899899999876 44443444445566788999999999999999 4445
Q ss_pred HHHHHHHHHHHHHHH--HHhcC-----chhHHHHHHHHHHhhhhhhhhHHHHHHHhhCC---------------------
Q 014716 279 FIAITLATMSVGHIV--VASGF-----PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGV--------------------- 330 (420)
Q Consensus 279 ~~~i~~~~~~~~~l~--l~~~~-----~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~--------------------- 330 (420)
++.++.+.++++... +..+. ...+.+..+...++.|...+....+++++||.
T Consensus 318 vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~ 397 (462)
T PRK15034 318 VTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAV 397 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHH
Confidence 555555544444322 11211 12223333333345555555556677777763
Q ss_pred CchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 014716 331 GHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIR 401 (420)
Q Consensus 331 ~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 401 (420)
++.|.+.|+....+.+|++ +-|.+.|..++.+|+ |...|+.+.+..++++++.++...|
T Consensus 398 ~~~g~v~G~v~a~G~~Ggf-~~p~~~g~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 398 TETAAALGFISAIGAVGGF-FIPQAFGMSLNMTGS-----------PVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred HHHHHHHHHHHHHHHcccc-hhhHHHHHHHHHcCC-----------cHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2678999999999999995 668899999999887 9999999999999999887765543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-13 Score=130.34 Aligned_cols=165 Identities=13% Similarity=0.135 Sum_probs=128.7
Q ss_pred HHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH---cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 201 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES---LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
+.++++.+|+..+..++..+....+..|.+.|+++ .|+++.+++...+.+..+..+||++.++++||++ ++
T Consensus 135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g------~~ 208 (310)
T TIGR01272 135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMIS------QG 208 (310)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------HH
Confidence 45678899998888898888888999999999975 3899999999999999999999999999999994 44
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHH
Q 014716 278 SFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIG 357 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g 357 (420)
..+.++..+.+++.++....+........++.|++.+..+|...+...+.+|+ +.+++.++.. ...+|+ .+.|++.|
T Consensus 209 ~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~~-~~~~Gg-~i~P~l~G 285 (310)
T TIGR01272 209 RYLAFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGILC-LAIVGG-AIVPLLQG 285 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHHH-HHHhcc-hHHHHHHH
Confidence 45556666666655544433333334466678999999999999999998884 4567777764 555787 47899999
Q ss_pred HHHHhhcCCCCCccccccccHHHHHHHHH
Q 014716 358 YIYDNVASGEGNSCNGTHCFMLSFLIMAS 386 (420)
Q Consensus 358 ~l~~~~g~~~~~~c~g~~~~~~~f~i~~~ 386 (420)
.+.|..| .+.+|++...
T Consensus 286 ~lad~~g------------~~~a~~v~~~ 302 (310)
T TIGR01272 286 SLADCLG------------IQLAFALPVP 302 (310)
T ss_pred HHHHhcc------------chHHHHHHHH
Confidence 9999887 7788875443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-14 Score=137.36 Aligned_cols=172 Identities=13% Similarity=0.044 Sum_probs=123.7
Q ss_pred HHHhhCHH--HHHHHHHHHHhcccchhhhccHHHHHH-HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCCh
Q 014716 200 LQSVCTLN--FWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 276 (420)
Q Consensus 200 ~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r 276 (420)
++.++++. ++......++..........++|.+.+ +.|.++.+.+...+...+++.+++++.|+++||++ |
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g------~ 284 (394)
T TIGR00883 211 RETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIG------R 284 (394)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------h
Confidence 44555544 666666666665555667778888885 45999889999999999999999999999999994 4
Q ss_pred hHHHHHHHHHHH-HHHHH-HH-h--cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHH-HHHhhhHHHH
Q 014716 277 PSFIAITLATMS-VGHIV-VA-S--GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTI-AIASPVGSYV 350 (420)
Q Consensus 277 ~~~~~i~~~~~~-~~~l~-l~-~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~~ 350 (420)
|..+.....+.. .+... .. . .+...+....++.|++.+..++...+++.|.+|++.|+++.++. +++..+|. .
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~-~ 363 (394)
T TIGR00883 285 RPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFG-G 363 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHh-h
Confidence 444443332222 22111 11 1 23334455667788888888899999999999999999999985 56677787 5
Q ss_pred hhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHH
Q 014716 351 CSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAF 389 (420)
Q Consensus 351 ~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~ 389 (420)
++|.+.|.+.|+.|. |+..++...++++
T Consensus 364 ~~p~~~g~l~~~~g~-----------~~~~~~~~~~~~l 391 (394)
T TIGR00883 364 FAPYIAAALVAMTGD-----------WYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHHHHcCc-----------chhHHHHHHHHHH
Confidence 889999999998875 6666666554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-13 Score=133.39 Aligned_cols=175 Identities=14% Similarity=0.024 Sum_probs=134.6
Q ss_pred cHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 198 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
+.++.+|++.+|...+..++.......+....|.+.++.|++..+.+.+.+...+...+..++.|++.||+ +++
T Consensus 197 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~------~~~ 270 (382)
T PRK11128 197 AWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW------SAR 270 (382)
T ss_pred hHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC------CHH
Confidence 35788999999988777766655555566777888888899988899998888888899999999999998 666
Q ss_pred HHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHH-HHhhhHHHHhhhHH
Q 014716 278 SFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIA-IASPVGSYVCSVRI 355 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~~~~~~l 355 (420)
..+.++.++.+++.+++. .++++.+++..++.|++.+...+....+..+. +++++++..++.+ ....+|. .++|.+
T Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~-~ig~~i 348 (382)
T PRK11128 271 DLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSI-AIMTVL 348 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHH-HHHHHH
Confidence 667777777777766655 44555567778888999998888888887776 5566788888886 5566666 588999
Q ss_pred HHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHH
Q 014716 356 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCL 393 (420)
Q Consensus 356 ~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~ 393 (420)
+|.++|..| + ..|+..+++.+++++
T Consensus 349 ~G~l~~~~g------------~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 349 SGFLYQHLG------------A-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHhcc------------H-HHHHHHHHHHHHHHH
Confidence 999999887 4 466666666555543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-13 Score=136.89 Aligned_cols=155 Identities=12% Similarity=0.043 Sum_probs=105.0
Q ss_pred hhCHHHHHHH-HHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHH
Q 014716 203 VCTLNFWLLF-VAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 280 (420)
Q Consensus 203 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~ 280 (420)
.++++.|... +..++..........+.|.|+++ .|++..++++...+..+++.++++++|+++||++ ||..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g------~r~~~ 307 (434)
T PRK15075 234 AANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIG------RRPVL 307 (434)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------chHHH
Confidence 3444555432 22333334445677889999987 5999888888888999999999999999999995 43444
Q ss_pred HHHHHHHHH-HHHH--HHhcCc--hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHH-HHHhhhHHHHhhhH
Q 014716 281 AITLATMSV-GHIV--VASGFP--GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTI-AIASPVGSYVCSVR 354 (420)
Q Consensus 281 ~i~~~~~~~-~~l~--l~~~~~--~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~~~~~~ 354 (420)
..+..+.++ .... ...... ..+.....+.+++.+...+..+.+.+|.+|++.||++.|+. +++..+++ .++|.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g-~~~p~ 386 (434)
T PRK15075 308 IAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFG-GFTPA 386 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHh-hhHHH
Confidence 443333222 2111 111222 22333345567777777777788999999999999999996 45555555 36899
Q ss_pred HHHHHHHhhc
Q 014716 355 IIGYIYDNVA 364 (420)
Q Consensus 355 l~g~l~~~~g 364 (420)
+.|.+.|..|
T Consensus 387 ~~g~i~~~~g 396 (434)
T PRK15075 387 ISTWLIHVTG 396 (434)
T ss_pred HHHHHHHhcC
Confidence 9999999887
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-14 Score=140.36 Aligned_cols=172 Identities=15% Similarity=0.178 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHH
Q 014716 207 NFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT 286 (420)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~ 286 (420)
.+|.+.+..++.....+.....+|.+.+++|.++.+.++..+.+.++..++.+..|+++||+ +||+++.++..+
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~ 83 (390)
T PRK03545 10 RVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV------ERRKLLIGLFVL 83 (390)
T ss_pred HHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------ChHHHHHHHHHH
Confidence 34444444444333333344457899999999999999999999999999999999999999 777888888888
Q ss_pred HHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcC
Q 014716 287 MSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS 365 (420)
Q Consensus 287 ~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~ 365 (420)
.+++.+.+. .++...+++.+++.|++.+..++...+++.+.+|+++|+++.|+...+..+|. +++|++.+.+.+..+
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~-~ig~~l~~~l~~~~g- 161 (390)
T PRK03545 84 FIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAM-VLGLPLGRVIGQYLG- 161 (390)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHH-HHHhhHHHHHHHHhc-
Confidence 888877766 56677788889999999998888999999999999999999999999999999 589999999988877
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 014716 366 GEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 366 ~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
|++.|++.++++++..+....
T Consensus 162 -----------w~~~f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 162 -----------WRTTFLAIGGGALITLLLLIK 182 (390)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887776655433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.7e-14 Score=140.65 Aligned_cols=178 Identities=11% Similarity=0.046 Sum_probs=123.6
Q ss_pred CcHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCCh
Q 014716 197 MNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 276 (420)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r 276 (420)
.+.+++++++.++...+...+.........+.++.+.++.+.+. .....+.++..+++.++.++++||+ +|
T Consensus 314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~------gr 384 (505)
T TIGR00898 314 YSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNI---YLDLFISGLVELPAKLITLLLIDRL------GR 384 (505)
T ss_pred CcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHh------CC
Confidence 35688899988877666554443332222223333334444442 2334456777888999999999999 66
Q ss_pred hHHHHHHHHHHHHHHHHHH-hcCc--hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhh
Q 014716 277 PSFIAITLATMSVGHIVVA-SGFP--GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 353 (420)
Q Consensus 277 ~~~~~i~~~~~~~~~l~l~-~~~~--~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 353 (420)
|..+.++.++.+++++++. ..+. .......++.+++.+..++..+.+.+|.+|++.|+++.|+.+....+|+ +++|
T Consensus 385 r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~-~i~p 463 (505)
T TIGR00898 385 RYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGS-IISP 463 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHH-HHHh
Confidence 7778887777777776655 2222 2344445566677777788889999999999999999999999999999 5889
Q ss_pred HHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 354 RIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 354 ~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
.+.+ + +..+ +..++++.+++++++.++.+++
T Consensus 464 ~i~~-~-~~~~------------~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 464 FLVY-L-GEKW------------LFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred HHHH-H-HHHH------------HhhHHHHHHHHHHHHHHHHHcC
Confidence 8888 4 3344 5577888887777776665443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-14 Score=142.28 Aligned_cols=174 Identities=14% Similarity=0.251 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 285 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~ 285 (420)
+.+|.+++..++.......+..++|.+.+++|.++.+.++..+.+.++..++.+++|+++||+ +||..+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~------g~r~~~~~~~~ 83 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV------GVRNIFFTAIV 83 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------chHHHHHHHHH
Confidence 367888888888777777788899999999999999999999999999999999999999999 56666777777
Q ss_pred HHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhc
Q 014716 286 TMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 364 (420)
Q Consensus 286 ~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g 364 (420)
+.+++.+.+. ..+...+++..++.|++.+...+...+++.|.+|++++++++|+.+.+..+|. .++|.+.|.+.+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~g~l~~~~g 162 (471)
T PRK10504 84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGP-LLGPALGGLLVEYAS 162 (471)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhhcc
Confidence 7777766655 45556678889999999999999999999999999999999999999999998 589999999999877
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 365 SGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 365 ~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
|++.|++...++.++.++....
T Consensus 163 ------------w~~~f~~~~~~~~l~~~~~~~~ 184 (471)
T PRK10504 163 ------------WHWIFLINIPVGIIGAIATLML 184 (471)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888777776655443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-14 Score=139.40 Aligned_cols=172 Identities=12% Similarity=0.167 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 285 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~ 285 (420)
+.+|.+....++...........+|.+.+++|.+..+.++..+...++..++.++.|+++||+ +||+.+.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~ 76 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY------SLKHILLFLVA 76 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC------ccHHHHHHHHH
Confidence 456777777777766667778889999999999999999999999999999999999999999 77778888888
Q ss_pred HHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhc
Q 014716 286 TMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 364 (420)
Q Consensus 286 ~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g 364 (420)
+.+++.+++. .++...+++.+++.|++.+...+....++.+.+++++|+.+.++...+..+|. .+++++.+.+.+..+
T Consensus 77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~l~~~l~~~~g 155 (382)
T PRK10091 77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVAN-LLGIPLGTYLSQEFS 155 (382)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHH-HHhccHHHHHhhhcc
Confidence 8888887776 56677788899999999999888888899999999999999999999999998 588899999988777
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHHHHHHH
Q 014716 365 SGEGNSCNGTHCFMLSFLIMASVAFVGCLVAF 396 (420)
Q Consensus 365 ~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~ 396 (420)
||++|++.++++++..+...
T Consensus 156 ------------wr~~f~~~~~~~~~~~~~~~ 175 (382)
T PRK10091 156 ------------WRYTFLLIAVFNIAVLASIY 175 (382)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHH
Confidence 99999998887776655433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.4e-14 Score=137.81 Aligned_cols=179 Identities=14% Similarity=0.138 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHH
Q 014716 207 NFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT 286 (420)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~ 286 (420)
.++..++.+++............|.+.+++|.+..+.++..+.+.++..++.+..|+++||+ +||+.+.++.++
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~------G~r~~~~~~~~~ 82 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII------GARRWIAGIMVL 82 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh------ChHHHHHHHHHH
Confidence 34444455554444444555667777788899999999999999999999999999999999 677778888888
Q ss_pred HHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcC
Q 014716 287 MSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS 365 (420)
Q Consensus 287 ~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~ 365 (420)
..++.++.. .++...+++.+++.|++.+...+....++.|.+|+++||++.|+.+.+..+|. ++++++.+.+.+..+
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~- 160 (412)
T TIGR02332 83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTM-ALGLILSGYILALDG- 160 (412)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCC-
Confidence 888887766 56677788999999999999988888999999999999999999999999999 588999998875311
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 366 GEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 366 ~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
+.+...||++|++.++.+++..++.+++
T Consensus 161 -----~~~~~gwr~~f~~~~~~~l~~~~~~~~~ 188 (412)
T TIGR02332 161 -----LMALKGWQWLFLLEGFPSVILGVMTWFW 188 (412)
T ss_pred -----CCCccchhHHHHHHHHHHHHHHHHHhhc
Confidence 0001129999999887776655544443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.8e-14 Score=136.68 Aligned_cols=136 Identities=14% Similarity=0.130 Sum_probs=104.1
Q ss_pred hhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHH-HHh-cCc
Q 014716 223 LATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIV-VAS-GFP 299 (420)
Q Consensus 223 ~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~-l~~-~~~ 299 (420)
.....++|.+.++ .|++..+.+++.+...++..+++++.|+++||+ +|+..+.++..+..+..+. +.. .+.
T Consensus 255 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (405)
T TIGR00891 255 HPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL------GRRKAYVCSLLAGQLLIIPVFAIGANV 328 (405)
T ss_pred hhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CchhhhHHHHHHHHHHHHHHHHhCCch
Confidence 3455677877764 599999999999999999999999999999999 4445555555444332222 222 222
Q ss_pred hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcC
Q 014716 300 GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS 365 (420)
Q Consensus 300 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~ 365 (420)
..+.+..++.|++.+..++..++++.|.+|++.+|++.|+.+....+|. .++|++.|.+.|+.|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~-~~g~~~~g~l~~~~g~ 393 (405)
T TIGR00891 329 AVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGG-ALAPIIGALLAQRLDE 393 (405)
T ss_pred HHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHH-HHHHHHHHHHHHhccc
Confidence 3344444666777777778888999999999999999999999999998 5899999999999886
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-14 Score=141.04 Aligned_cols=147 Identities=14% Similarity=0.079 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 285 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~ 285 (420)
+..+..++..++..........+.|++.++.|++..+.+...+...++..+++++.|+++||+ +|+..+.....
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~ 323 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL------GPRVTALLLLL 323 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------chHHHHHHHHH
Confidence 344555555555555555667788888888899999999999999999999999999999999 44433333333
Q ss_pred HHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHH
Q 014716 286 TMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 359 (420)
Q Consensus 286 ~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l 359 (420)
......++.. ..+....++..++.|++.+...+...+++.|.+|++.||++.|+.+....+|. .++|.+.|.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~~g~~~~G~l 397 (398)
T TIGR00895 324 GAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGA-IIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH-HHHHHhHHhc
Confidence 3222222222 33445566778889999999999999999999999999999999999999998 5889998875
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.3e-14 Score=137.52 Aligned_cols=176 Identities=10% Similarity=0.067 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHH-HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 284 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~ 284 (420)
+++|.+.+..++...........+|.+++ ++|++..+.++..+...+...++++..|+++||+ +||..+.++.
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~------g~k~~~~~~~ 80 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF------DKKRYMLLAI 80 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CcchhHHHHH
Confidence 46778888888877776777777887775 5699999999999999999999999999999999 5556677777
Q ss_pred HHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhh
Q 014716 285 ATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV 363 (420)
Q Consensus 285 ~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~ 363 (420)
++.+++.+++. .++...+++...+.|.+.+...+...++..|.+|+++|++++|+.+....+|. +++|.+.+.+.+ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~-~igp~l~~~l~~-~ 158 (395)
T PRK10054 81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGW-TVGPPLGTLLVM-Q 158 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-h
Confidence 77777766655 34444455556667777777778888999999999999999999999999998 588999998875 4
Q ss_pred cCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 014716 364 ASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIR 401 (420)
Q Consensus 364 g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 401 (420)
+ |+.+|++.+++++++.++..+..+|
T Consensus 159 g------------~~~~f~~~~~~~~i~~i~~~~~~~~ 184 (395)
T PRK10054 159 S------------INLPFWLAAICSAFPLVFIQIWVQR 184 (395)
T ss_pred c------------cCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 5 8999998888877776554443333
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=4e-13 Score=135.08 Aligned_cols=285 Identities=11% Similarity=-0.040 Sum_probs=180.2
Q ss_pred eecCCCccccchhHhhhhhhccchHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHhhe-eeecCCCC-Cc-------
Q 014716 5 LEYNRIPFFFFLPLSTVQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSL-VRIHGTNS-AD------- 75 (420)
Q Consensus 5 ~~~~r~~~~~~~~~g~~~~~~gLs~~i~~~~~~~~~~~~~~~~~~~l~~~p~~i~~~~~~~-~~~~p~~~-~~------- 75 (420)
|.+.|+.. .++.....-....+++.+...+..+..|+|.+.++.+-..++++..++ .+++|..+ +.
T Consensus 160 p~k~R~~~-----~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~ 234 (599)
T PF06609_consen 160 PNKWRGLG-----LAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKRE 234 (599)
T ss_pred ccchhhhH-----hHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHH
Confidence 55666655 666655554544566777777877889999999987544555554444 34333211 11
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHH--hcc-ccCchhHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCcccCCCCCC
Q 014716 76 DKKHLNAFSAVALTIAAYLMIIIIL--ENI-FTFPLWARIITFLFLLFLLSSPLGIAIKAQREDTTRLSPTFATQRSPLV 152 (420)
Q Consensus 76 ~~~~~~~~~~i~~~l~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~i~ll~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 152 (420)
+-+++|+.|.++++.+.-++...+. .+. .+|++...++..++.++++..+...+.... .++|.
T Consensus 235 ~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~-------------~~~Pl- 300 (599)
T PF06609_consen 235 QLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGA-------------PKDPL- 300 (599)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhcc-------------CCCCc-
Confidence 1123788887766555555554444 332 358888777777777777777766543200 01111
Q ss_pred CCCCCCcccccCCCCCcccccCCCCCcccchhhhccccccccccCcHHHHhhC-HHHHHHHHHHHHhcccchhhhccHHH
Q 014716 153 DCPETTTSTKFSASQDSVAYHELPGEESQVKAEFDDKKLKDEEDMNILQSVCT-LNFWLLFVAMLCGMGSGLATVNNISQ 231 (420)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (420)
-..+++|+ +.++..++..++.....+......|+
T Consensus 301 ---------------------------------------------~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~ 335 (599)
T PF06609_consen 301 ---------------------------------------------FPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQ 335 (599)
T ss_pred ---------------------------------------------CCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12667776 56777666766665555666666666
Q ss_pred HHHHc-CCCc---cchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH---hcCchhHHH
Q 014716 232 IGESL-GYPT---SAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA---SGFPGNLYV 304 (420)
Q Consensus 232 ~~~~~-g~s~---~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~---~~~~~~l~~ 304 (420)
..... +-+. ...++.....+++..+|.++.|.+.-+++ .-|+.++++.+++.+++-+++ ..+....+.
T Consensus 336 ~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir-----~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~ 410 (599)
T PF06609_consen 336 QVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIR-----HIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIA 410 (599)
T ss_pred HHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHcc-----chhHHHHHHHHHHHHHHHHHHHccCCCcchHHH
Confidence 65544 4443 35677888889999999999999987773 235666677666665444444 234445667
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHH
Q 014716 305 GSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 359 (420)
Q Consensus 305 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l 359 (420)
..++.|++.|....+....+.-..|.++.|++.|+......+|+. ++.-++..+
T Consensus 411 ~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGs-Ig~aIy~~I 464 (599)
T PF06609_consen 411 FLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGS-IGYAIYNAI 464 (599)
T ss_pred HHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhH-HHHHHHHHH
Confidence 777888888887777777666778989999999999666666553 333344333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=152.75 Aligned_cols=177 Identities=10% Similarity=0.082 Sum_probs=131.0
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
++.+.+++.+|...+..++.......+..++|.|+++. |.++...+++.+.+.++.++|.++.|+++|+..++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~------ 291 (1140)
T PRK06814 218 LKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITL------ 291 (1140)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceee------
Confidence 35666788888888877777666667777899998875 99999999999999999999999999999876432
Q ss_pred HHHHHHHHHHHHHHHHHHh---------------------cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHH
Q 014716 278 SFIAITLATMSVGHIVVAS---------------------GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTI 336 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~~---------------------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~ 336 (420)
..+..+.++.+++.+.+.. .+.+.+.+..+++|++.+...+..++++.+.+|++.+|++
T Consensus 292 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v 371 (1140)
T PRK06814 292 LYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARV 371 (1140)
T ss_pred eeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceee
Confidence 2222222232222221111 3334466777888999999998999999999999999999
Q ss_pred HHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHH
Q 014716 337 FNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCL 393 (420)
Q Consensus 337 ~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~ 393 (420)
+|+.++...+|. .+++++.|.+.+...+ +...|++.+.++++..+
T Consensus 372 ~g~~~~~~~~~~-~ig~~~~g~l~~~~~~-----------~~~~~~~~~~~~~~~~~ 416 (1140)
T PRK06814 372 IAANNVLNAAFM-VAGTIILALLQALGFS-----------IPWIILFIALANLIVAI 416 (1140)
T ss_pred eHHHHHHHHHHH-HHHHHHHHHHHHhccC-----------HHHHHHHHHHHHHHHHH
Confidence 999999999988 5888899998865443 66666665554444443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.5e-14 Score=136.96 Aligned_cols=162 Identities=14% Similarity=0.175 Sum_probs=137.9
Q ss_pred hcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-h
Q 014716 218 GMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-S 296 (420)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~ 296 (420)
.......+...+|.+.++.|.++.+.++..+.+.++..++.++.|+++||+ +||+.+..+.++.+++.+.+. .
T Consensus 17 ~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~------g~r~~~~~~~~~~~~~~~~~~~~ 90 (385)
T TIGR00710 17 GPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY------GRRPVLLLGLFIFALSSLGLALS 90 (385)
T ss_pred HHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc------CChHHHHHHHHHHHHHHHHHHHH
Confidence 334445566778899899999999999999999999999999999999999 666778788888888777766 4
Q ss_pred cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccc
Q 014716 297 GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHC 376 (420)
Q Consensus 297 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~ 376 (420)
.+...+.+..++.|++.+...+...+++.|.+|+++|++..|+.+....+|. .+++.+.+.+.+..+
T Consensus 91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~l~~~~~------------ 157 (385)
T TIGR00710 91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAP-AVAPLLGGYILVWLS------------ 157 (385)
T ss_pred ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcC------------
Confidence 5566678888999999999999999999999999999999999999999998 588999999988877
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 014716 377 FMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 377 ~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
|+..|++.++++++..+...+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 158 WHAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888877776655443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.8e-14 Score=136.10 Aligned_cols=152 Identities=11% Similarity=0.195 Sum_probs=133.2
Q ss_pred hhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchh
Q 014716 223 LATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGN 301 (420)
Q Consensus 223 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~ 301 (420)
+.....+|.+.+++|+++.+.++..+...++..+++++.|+++||+ +||..+..+.++.+++.+.+. .++.+.
T Consensus 37 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~------grr~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (394)
T PRK10213 37 FLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT------DRRYVVILFAVLLTLSCLLVSFANSFSL 110 (394)
T ss_pred HHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc------CcHHHHHHHHHHHHHHHHHHHHHChHHH
Confidence 3445567888899999999999999999999999999999999999 777888888888888877766 556677
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHH
Q 014716 302 LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSF 381 (420)
Q Consensus 302 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f 381 (420)
+++.+++.|++.|..++...+++.|.+|+++|+.+.++...+..+|. +++|.+.+.+.+..+ |++.|
T Consensus 111 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~-~ig~~l~~~l~~~~g------------w~~~f 177 (394)
T PRK10213 111 LLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIAL-VIAAPLGSFLGELIG------------WRNVF 177 (394)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcC------------HHHHH
Confidence 88999999999999999999999999999999999999999999998 589999999998887 99999
Q ss_pred HHHHHHHHHHHH
Q 014716 382 LIMASVAFVGCL 393 (420)
Q Consensus 382 ~i~~~~~~~~~~ 393 (420)
++.+++++++.+
T Consensus 178 ~~~~~l~~~~~l 189 (394)
T PRK10213 178 NAAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHHHHHH
Confidence 988776665443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=137.24 Aligned_cols=170 Identities=12% Similarity=-0.005 Sum_probs=140.2
Q ss_pred HHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHH
Q 014716 209 WLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMS 288 (420)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~ 288 (420)
|.++...++...........+|.+..+.+.+..+.++..+...++..++.++.|+++||+ +||+.+.++.++.+
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~------g~r~~~~~~~~~~~ 75 (365)
T TIGR00900 2 RLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRY------DRKKVMIGADLIRA 75 (365)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh------chhHHHHHHHHHHH
Confidence 445566666666566677788889999999999999999999999999999999999999 66677777777666
Q ss_pred HHHHHHH-hc-----CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHh
Q 014716 289 VGHIVVA-SG-----FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN 362 (420)
Q Consensus 289 ~~~l~l~-~~-----~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~ 362 (420)
++.++.. .. +...+++..++.|++.+...+...++++|.+|+++|++..|+.+.+..+|. +++|.+.+.+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~l~~~l~~~ 154 (365)
T TIGR00900 76 VLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFY-IVGPGIGGLMYAT 154 (365)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 6555443 22 556678888999999999999999999999999999999999999999999 6899999999988
Q ss_pred hcCCCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 014716 363 VASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 363 ~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
.+ |++.|++.++..+++.++...
T Consensus 155 ~g------------~~~~~~~~~~~~~~~~~~~~~ 177 (365)
T TIGR00900 155 LG------------IKWAIWVDAVGFAISALLIVS 177 (365)
T ss_pred hh------------HHHHHHHHHHHHHHHHHHHHh
Confidence 87 999998887777666554433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-14 Score=141.25 Aligned_cols=193 Identities=15% Similarity=0.156 Sum_probs=145.0
Q ss_pred cCcHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhc--
Q 014716 196 DMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRM-- 272 (420)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~-- 272 (420)
..+++++++++.+|..++..++.....+.+..++|.|+++. |++..+.|++.++..+.+.+.++++|.++||.-+|.
T Consensus 248 ~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls 327 (466)
T KOG2532|consen 248 PVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILS 327 (466)
T ss_pred CCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 35689999999999999999999999999999999999987 999999999999999999999999999999996641
Q ss_pred -CCChhHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHH
Q 014716 273 -GWERPSFIAITLATMSVGHIVVASGF--PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSY 349 (420)
Q Consensus 273 -~~~r~~~~~i~~~~~~~~~l~l~~~~--~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 349 (420)
...||..-.++....++.++.+...+ .....+.....+.+..+..............+++-+..+|+.+....+++
T Consensus 328 ~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~- 406 (466)
T KOG2532|consen 328 ETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAG- 406 (466)
T ss_pred hHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHH-
Confidence 12567777888888888887776332 22222222223333333322222222222256888999999999999999
Q ss_pred HhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 350 VCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 350 ~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
+++|.+.|.+.. .++ .+-|+..|++.+++.+++.++..++
T Consensus 407 ~~~P~~vg~~~~-~~t--------~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 407 FIAPLLVGIIVT-DNT--------REEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHheeeEeC-CCC--------HHHHHHHHHHHHHHHHHhchheeEe
Confidence 589999999884 111 1119999999999999988654443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-14 Score=137.48 Aligned_cols=175 Identities=16% Similarity=0.150 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 285 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~ 285 (420)
+.|...++.+...+..--.+....|.+.++.|+|.++.+.+.+.+.+...++..++|.++||. +.|.++.++++
T Consensus 29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~------npr~fm~~gLi 102 (448)
T COG2271 29 QIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS------NPRYFMAFGLI 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC------CCceeehHHHH
Confidence 344444555554444444577788999999899999999999999999999999999999999 66677899999
Q ss_pred HHHHHHHHHHh-cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHH--HHHHHh
Q 014716 286 TMSVGHIVVAS-GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRII--GYIYDN 362 (420)
Q Consensus 286 ~~~~~~l~l~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~--g~l~~~ 362 (420)
+.++..+++.+ .+...+.+..++.|+..|..+|+....+...|++++||+.+++.|++.++|+. +.|++. +.+.++
T Consensus 103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGa-l~~~~~~la~~~~~ 181 (448)
T COG2271 103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGA-LAPLVALLAFFAFH 181 (448)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccc-hHHHHHHHHHHHhc
Confidence 99999999884 44455778888999999999999999999999999999999999999999996 567777 888877
Q ss_pred hcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 363 VASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 363 ~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
.+ |+..|++.++++++..++.+.+.
T Consensus 182 ~~------------w~~~f~~pgiiaiival~~~~~~ 206 (448)
T COG2271 182 GG------------WRAAFYFPGIIAIIVALILLFLL 206 (448)
T ss_pred cc------------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 66 99999999998887776655543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-13 Score=131.21 Aligned_cols=181 Identities=8% Similarity=0.028 Sum_probs=121.2
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
++.++++.++...+..+...........++|.+.++.+.++.+.+++.+...+....+....+++.||.. +.+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~-----~~~~~ 276 (400)
T PRK11646 202 TRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRF-----RLEHR 276 (400)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----chhHH
Confidence 5567777777655544433332333456789988888667778888877777766554444455555421 22233
Q ss_pred HHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHH
Q 014716 280 IAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGY 358 (420)
Q Consensus 280 ~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~ 358 (420)
+..+..+.+++.+++. ..+...+.+..++.+++.+...+...+++.+..|++++|+.+|+.+....+|. .++|.+.|.
T Consensus 277 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~-~ig~~l~G~ 355 (400)
T PRK11646 277 LMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGG-AIGYIGGGW 355 (400)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHH-HhcccchHH
Confidence 4555556666665554 33344455556677888888888889999999999999999999999999998 589999999
Q ss_pred HHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 014716 359 IYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 359 l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
+.|..++. +-...+|++.+.+++++.+.
T Consensus 356 l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 356 LFDLGKAL--------NQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHhhc--------CCcchHHHHHHHHHHHHHHH
Confidence 99986420 00345666655555555443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-13 Score=134.16 Aligned_cols=158 Identities=14% Similarity=-0.077 Sum_probs=116.6
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
.++.++++.+|...+..++............|.+.++ .|+++.+.++......++..+++++.|+++||+ +++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~------~~~ 281 (406)
T PRK15402 208 YKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR------PLR 281 (406)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CHH
Confidence 3567888898887777665554444555567777654 599988888888878888999999999999999 555
Q ss_pred HHHHHHHHHHHHHHHHHHh------cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHh
Q 014716 278 SFIAITLATMSVGHIVVAS------GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVC 351 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~~------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 351 (420)
..+.++.++.+++.+++.. .+...+.+..++.|++.+...+......... +++++|+..++.++...+|. .+
T Consensus 282 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~-~~ 359 (406)
T PRK15402 282 SLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIF-TV 359 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHH-HH
Confidence 5566666666665554431 1223456677788888888776666555443 34889999999999999998 58
Q ss_pred hhHHHHHHHHhhc
Q 014716 352 SVRIIGYIYDNVA 364 (420)
Q Consensus 352 ~~~l~g~l~~~~g 364 (420)
++.+.+.+++..+
T Consensus 360 g~~~~~~l~~~~~ 372 (406)
T PRK15402 360 GIELSKHAYLGGG 372 (406)
T ss_pred HHHHHHhcccCCc
Confidence 8999999998776
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=138.81 Aligned_cols=173 Identities=9% Similarity=0.046 Sum_probs=146.0
Q ss_pred HHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHH
Q 014716 208 FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATM 287 (420)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~ 287 (420)
+..+.+..++...-...+...+|.+.+++|.+..+.++..+.+.++..++.+.+|+++||+ +||..+.++..+.
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~------Grk~~l~~~~~~~ 81 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI------GFKRLLMLGGTLF 81 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHH
Confidence 3445555566666666677789999999999999999999999999999999999999999 7778889999999
Q ss_pred HHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhh-CCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcC
Q 014716 288 SVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIF-GVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS 365 (420)
Q Consensus 288 ~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~ 365 (420)
.++.+++. .++...+++.+++.|++.+...+.....+.+.+ |+++|+++.|+......+|. .++|.++|.+.+..+
T Consensus 82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~-~~gp~lgg~l~~~~g- 159 (495)
T PRK14995 82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGA-AFGPLVGGILLEHFY- 159 (495)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCC-
Confidence 98888877 566777888999999999988887777787776 67899999999999999999 699999999999877
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 366 GEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 366 ~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
||+.|++...++++.+++.....
T Consensus 160 -----------wr~~f~i~~~~~~~~~~l~~~~l 182 (495)
T PRK14995 160 -----------WGSVFLINVPIVLVVMGLTARYV 182 (495)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999998877777766554443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-14 Score=136.55 Aligned_cols=163 Identities=19% Similarity=0.249 Sum_probs=137.4
Q ss_pred HHHHHhcccchhhhccHH-HHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHH
Q 014716 213 VAMLCGMGSGLATVNNIS-QIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGH 291 (420)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~ 291 (420)
+..++.......+...+| .+.+++|.+..+.++..+...++..++.++.|+++||+ +||..+.++.++.+++.
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~l~~~~~~~~~~~ 76 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF------GRRRVLIIGLLLFALGS 76 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCeeeEeehhhhhhhHH
Confidence 334444444445666777 66677899999999999999999999999999999999 66678888888888885
Q ss_pred HHHHh-cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCc
Q 014716 292 IVVAS-GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNS 370 (420)
Q Consensus 292 l~l~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~ 370 (420)
++... .+...+++..++.|++.+...+...+++.|.+|+++|++..++.+.+..+|. +++|.+.+.+.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~l~~~l~~~~~------ 149 (352)
T PF07690_consen 77 LLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGS-ILGPLLGGFLISYFG------ 149 (352)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHH-HHHHHHHHHCCCHCH------
T ss_pred HHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhh-hcccchhhhhhhccc------
Confidence 55443 5555788889999999999999999999999999999999999999999999 688999999987777
Q ss_pred cccccccHHHHHHHHHHHHHHHHH
Q 014716 371 CNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 371 c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
|++.|++.++++++++++
T Consensus 150 ------~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 150 ------WRWAFLISAILSLIAAIL 167 (352)
T ss_dssp ------HCCHHHHHHHHHHHHHHH
T ss_pred ------cccccccccchhhhhhhh
Confidence 999999999999888764
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=8e-13 Score=128.76 Aligned_cols=154 Identities=17% Similarity=0.131 Sum_probs=110.1
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHH-HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
.++.++++++|...+...+.......+..+.|.+.+ +.|+++.+.+.+.+...++..+++++.|+++||+ +++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~------~~~ 272 (385)
T TIGR00710 199 FLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW------GAK 272 (385)
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CHH
Confidence 356677888887776666655555666777788776 5599999999999999999999999999999999 444
Q ss_pred HHHHHHHHHHHHHHHHHHh----c-C-chhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHh
Q 014716 278 SFIAITLATMSVGHIVVAS----G-F-PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVC 351 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~~----~-~-~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 351 (420)
..+..+..+..++.+++.. . . ...+....++.|++.+...+.......|.+| +++|++.++.+.....++.+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~ 351 (385)
T TIGR00710 273 SLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIV 351 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHH
Confidence 5555555555555444331 1 1 1223445667888888888888888888887 678999999887776655455
Q ss_pred hhHHHHHHH
Q 014716 352 SVRIIGYIY 360 (420)
Q Consensus 352 ~~~l~g~l~ 360 (420)
++ +.+.+.
T Consensus 352 ~~-~~~~~~ 359 (385)
T TIGR00710 352 GY-LVSLIH 359 (385)
T ss_pred HH-HHHhcc
Confidence 54 455443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=136.91 Aligned_cols=170 Identities=17% Similarity=0.199 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHHH---cCCCccchhHHHHHHHHHHHHhHhhhhhhhHh-HhhhcCCChhHHHH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGES---LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDI-VLHRMGWERPSFIA 281 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr-~~~~~~~~r~~~~~ 281 (420)
+.+|.++...++...+.++...++|.|+++ +|++..++++.++.+.++..++++++|+++|| + +||..+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~------G~~~~l~ 83 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVW------GTKKTMV 83 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhc------chHHHHH
Confidence 356777777777777778888899999875 69999999999999999999999999999999 7 7778888
Q ss_pred HHHHHHHHHHHHHHh-cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCc---hHHHHHHHHHHhhhHHHHhhhHHHH
Q 014716 282 ITLATMSVGHIVVAS-GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGH---MGTIFNTIAIASPVGSYVCSVRIIG 357 (420)
Q Consensus 282 i~~~~~~~~~l~l~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~g~~~~~~~l~g 357 (420)
++.++.+++.+++.. .+...+++..++.|++.|...+...+++++.+|+++ |++++++.+.+.++|. +++|.+.|
T Consensus 84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~-~ig~~l~g 162 (475)
T TIGR00924 84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGS-FISPLLAG 162 (475)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHH-HHHHHHHH
Confidence 898898888887763 344556677888999999999999999999998764 8889999999999999 59999999
Q ss_pred HHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 014716 358 YIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 358 ~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
.+.+..+ |++.|.+.++.++++.+.
T Consensus 163 ~l~~~~g------------~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 163 VIAENYG------------YHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HHHHhcC------------hHHHHHHHHHHHHHHHHH
Confidence 9998877 999999988766665544
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=138.97 Aligned_cols=171 Identities=15% Similarity=0.221 Sum_probs=144.4
Q ss_pred HHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHH
Q 014716 210 LLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSV 289 (420)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~ 289 (420)
.+.+..++...........+|.+.+++|.+..+.++..+.+.++..++.++.|+++||+ +||..+.++.++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~~~~ 79 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF------GTRRLFLISTFAFTL 79 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh------CcHHHHHHHHHHHHH
Confidence 33444444444445567788999999999999999999999999999999999999999 677778888888888
Q ss_pred HHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCC
Q 014716 290 GHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEG 368 (420)
Q Consensus 290 ~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~ 368 (420)
+.+++. ..+...+++..++.|++.+...+...+++.|.+|+++|+++.++.+.+..+|. .++|.+.|.+.++.+
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~~~~~---- 154 (485)
T TIGR00711 80 GSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAP-ALGPTLGGWIIENYH---- 154 (485)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHh-hhhhccHhHhccCcC----
Confidence 888776 55667788899999999999999999999999999999999999999999999 589999999998777
Q ss_pred CccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 369 NSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 369 ~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
|++.|++.+.+++++.++..+..
T Consensus 155 --------w~~~f~~~~~~~~~~~~~~~~~~ 177 (485)
T TIGR00711 155 --------WRWIFLINVPIGIIVVVVAFFIL 177 (485)
T ss_pred --------ceehhhhhhHHHHHHHHHHHHHc
Confidence 99999998887777666554443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-13 Score=131.82 Aligned_cols=168 Identities=13% Similarity=0.156 Sum_probs=136.3
Q ss_pred HHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHH
Q 014716 208 FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATM 287 (420)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~ 287 (420)
+...++..++............|.+.+++|.+..+.++..+...++..++.++.|+++||+ +||..+.++.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~------g~r~~~~~~~~~~ 87 (405)
T TIGR00891 14 FSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY------GRRLPMVTSIVLF 87 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHH
Confidence 3444555555555555566777888888899999999999999999999999999999999 6667777787777
Q ss_pred HHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCC
Q 014716 288 SVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASG 366 (420)
Q Consensus 288 ~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~ 366 (420)
+++.++.. ..+...+++..++.|++.+..++...+++.|.+|+++|+++.++.+.+..+|. ++++.+.+.+.+..+.
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~l~~~l~~~~~~- 165 (405)
T TIGR00891 88 SAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGA-VVAAQVYSLVVPVWGD- 165 (405)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCc-
Confidence 77777665 45666788889999999999999999999999999999999999999999999 5888899888876541
Q ss_pred CCCccccccccHHHHHHHHHHHHHHH
Q 014716 367 EGNSCNGTHCFMLSFLIMASVAFVGC 392 (420)
Q Consensus 367 ~~~~c~g~~~~~~~f~i~~~~~~~~~ 392 (420)
.|++.|++.++..++..
T Consensus 166 ---------~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 166 ---------GWRALFFISILPIIFAL 182 (405)
T ss_pred ---------cHHHHHHHHHHHHHHHH
Confidence 19999887655544443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-14 Score=137.23 Aligned_cols=157 Identities=17% Similarity=0.233 Sum_probs=133.6
Q ss_pred hhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchh
Q 014716 223 LATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGN 301 (420)
Q Consensus 223 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~ 301 (420)
..+....|++.++.|.+..+.++..+...++..++.++.|+++||+ +||..+.++.++.+++.+++. ..+...
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~------g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF------GARKTLAVFIVIWGVFTGLQAFAGAYVS 84 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc------CcceeeHHHHHHHHHHHHHHHHHcCHHH
Confidence 3455667888888899999999999999999999999999999999 555567777777777776665 456677
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHH
Q 014716 302 LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSF 381 (420)
Q Consensus 302 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f 381 (420)
+++..++.|++.+...+....++.|.+|+++|++..++.+....+|. ++++.+.+.+.+..+ |++.|
T Consensus 85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~------------~~~~~ 151 (399)
T TIGR00893 85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGG-IIGGPLVGWILIHFS------------WQWAF 151 (399)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHhCC------------chHHH
Confidence 88889999999999999999999999999999999999999999999 588999999988877 99999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014716 382 LIMASVAFVGCLVAFLL 398 (420)
Q Consensus 382 ~i~~~~~~~~~~~~~~~ 398 (420)
++.++++++..++....
T Consensus 152 ~~~~~~~~~~~~~~~~~ 168 (399)
T TIGR00893 152 IIEGVLGIIWGVLWLKF 168 (399)
T ss_pred HHHHHHHHHHHHHhhhe
Confidence 99888877766554443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-11 Score=123.71 Aligned_cols=184 Identities=16% Similarity=0.204 Sum_probs=149.2
Q ss_pred cHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHH-HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCCh
Q 014716 198 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 276 (420)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r 276 (420)
++++..|.++....+++.++..-+..+++.....|.+ ++|++..+...+..+..+.+++|.++.|++.||++.|. +
T Consensus 273 t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~---~ 349 (477)
T PF11700_consen 273 TFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKT---K 349 (477)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch---h
Confidence 4567777888888888888877776777777777777 55999999888889999999999999999999997541 1
Q ss_pred hHHHHHHHHHH-HHHHHHHH--------hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhH
Q 014716 277 PSFIAITLATM-SVGHIVVA--------SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVG 347 (420)
Q Consensus 277 ~~~~~i~~~~~-~~~~l~l~--------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 347 (420)
+. +.+.+.+. .+....+. ..+.+.+++..++.|++.|..++..-++.+++.|+++.+..+|+.++.+...
T Consensus 350 ~~-l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~s 428 (477)
T PF11700_consen 350 RT-LLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKAS 428 (477)
T ss_pred HH-HHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 23 33333322 33333332 3445668889999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 014716 348 SYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 348 ~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
+ .+||++.|.+.|.+|+ .|..+....++.++++++...
T Consensus 429 s-~lGPll~g~i~~~tg~-----------~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 429 S-WLGPLLFGLITDATGS-----------QRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred H-HHHHHHHHHHHHHhCC-----------chhHHHHHHHHHHHHHHHHhh
Confidence 9 5999999999999987 889999998888888876543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.9e-12 Score=124.04 Aligned_cols=157 Identities=10% Similarity=0.056 Sum_probs=115.2
Q ss_pred ccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hc
Q 014716 220 GSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SG 297 (420)
Q Consensus 220 ~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~ 297 (420)
.....+..+.|.+.++ +|+++.+++.+.+...+...+++++.|+++||++ ||..+..+.....+....+. ..
T Consensus 230 ~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g------~~~~~~~~~~~~~~~~~~~~~~~ 303 (393)
T PRK15011 230 GTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLG------KRFLMRVAAVAGVCFYAGMLMAH 303 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------hHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455678888765 5999888888888878888899999999999994 44444444443333333322 33
Q ss_pred CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCcccccccc
Q 014716 298 FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCF 377 (420)
Q Consensus 298 ~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~ 377 (420)
+.....+..++.+++.|...+..+.+..|.+|. ++|++.++.+....+|. .++|.+.|.+.|..+ |
T Consensus 304 ~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~-~~g~~l~G~i~~~~g------------~ 369 (393)
T PRK15011 304 SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGW-IIAGSLAGIVAEIWN------------Y 369 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHH-HHHHHHHHHHHHHhh------------h
Confidence 444455556666777777777777888898885 59999999988888998 589999999999887 9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014716 378 MLSFLIMASVAFVGCLVAF 396 (420)
Q Consensus 378 ~~~f~i~~~~~~~~~~~~~ 396 (420)
+..|++.++++++++++.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 370 HAVFWFALVMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999888877777665543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-13 Score=132.91 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=128.9
Q ss_pred hhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchh
Q 014716 223 LATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGN 301 (420)
Q Consensus 223 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~ 301 (420)
.......|.+.++.|.++.+.++..+...++..++.++.|+++||+ +||+.+..+..+..++.+++. ..+...
T Consensus 32 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (406)
T PRK11551 32 QSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI------GRKRILIVSVALFGLFSLATAQAWDFPS 105 (406)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCchhHHHHHHHHHHHHHHHHHhccHHH
Confidence 3345566888889999999999999999999999999999999999 666667777777777666555 455667
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHH
Q 014716 302 LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSF 381 (420)
Q Consensus 302 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f 381 (420)
+.+..++.|++.+...+...+++.|.+|+++|+++.++.+.+..+|. .+++.+.+.+.+..+ |+..|
T Consensus 106 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~------------~~~~~ 172 (406)
T PRK11551 106 LLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGG-ALASVIGVLAAGDAA------------WRHIF 172 (406)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccccC------------HHHHH
Confidence 78889999999999999999999999999999999999999999998 578888877777666 99999
Q ss_pred HHHHHHHHHHHHHHHH
Q 014716 382 LIMASVAFVGCLVAFL 397 (420)
Q Consensus 382 ~i~~~~~~~~~~~~~~ 397 (420)
++.+++.++.+++...
T Consensus 173 ~~~~~~~~~~~~~~~~ 188 (406)
T PRK11551 173 YVGGVGPLLLVPLLMR 188 (406)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9887766655544433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-12 Score=128.80 Aligned_cols=177 Identities=11% Similarity=-0.016 Sum_probs=116.4
Q ss_pred HHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 201 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
+.++++.++.......+...........++.+.++. |+++.+.+...+..+++..+|.+..+++.||. +++..
T Consensus 200 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~------~~~~~ 273 (393)
T PRK11195 200 VLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE------TVLRV 273 (393)
T ss_pred HHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC------cccch
Confidence 345555554443333333333334445566666654 99999999999999999999999999998876 33334
Q ss_pred HHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCc-hHHHHHHHHHHhhhHHHHhhhHHHH
Q 014716 280 IAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGH-MGTIFNTIAIASPVGSYVCSVRIIG 357 (420)
Q Consensus 280 ~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~~~~~~l~g 357 (420)
+..+. +.++..+.+. ..+.....+..++.|++.+...++..+.+.+..|++. +|++.++.++...++. .++..+.+
T Consensus 274 ~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~-~~~~~~~~ 351 (393)
T PRK11195 274 LPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAM-LLMLGLYS 351 (393)
T ss_pred HHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHH-HHHHHHHH
Confidence 44443 3333333333 2333334566667899888888888888888755544 6999999999999998 47777777
Q ss_pred HHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 358 YIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 358 ~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
.+ +..| -+..+++.++..++++.+...+
T Consensus 352 ~~-~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 352 LL-VKLG------------VPVVAVIVGFGLLVALAMALLW 379 (393)
T ss_pred HH-HHcC------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 54 6666 5667776666555555544433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-13 Score=133.23 Aligned_cols=169 Identities=12% Similarity=0.142 Sum_probs=138.7
Q ss_pred HHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHH
Q 014716 212 FVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGH 291 (420)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~ 291 (420)
+...+........+...+|.+.++.|.+..+.++..+.+.++..++.++.|+++||+ +||..+.++.++.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~------g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 9 FALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS------GRKPVAIPGAALFIIAS 82 (392)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh------CChHHHHHHHHHHHHHH
Confidence 344444444445566789999999999999999999999999999999999999999 66677888888877777
Q ss_pred HHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCc
Q 014716 292 IVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNS 370 (420)
Q Consensus 292 l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~ 370 (420)
+.+. ..+...+++..++.|++.+..++...+++.|.+++++|+++.++.+....++. +++|.+.+.+.+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~-~~~~~i~~~l~~~~g------ 155 (392)
T PRK10473 83 LLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIP-VLAPVLGHLIMLKFP------ 155 (392)
T ss_pred HHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcC------
Confidence 7666 44556677788899999998888999999999999999999999999888888 588888888877766
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 371 CNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 371 c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
|++.|++.++++++..++.....
T Consensus 156 ------~~~~~~~~~~~~~i~~~~~~~~~ 178 (392)
T PRK10473 156 ------WQSLFYTMAAMGILVLLLSLFIL 178 (392)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999998888777766654443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-12 Score=123.26 Aligned_cols=160 Identities=13% Similarity=0.054 Sum_probs=122.7
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
++.+|++.+|...+..++..........++|.+.++.|++..+.+...+...++.++++++.|+++||++ +|+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~-----~~~~~ 265 (355)
T TIGR00896 191 VRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVK-----DQRGI 265 (355)
T ss_pred chhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhc-----cchHH
Confidence 4567888888877766666666667778899999989999999999999999999999999999999994 33445
Q ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhC-CCchHHHHHHHHHHhhhHHHHhhhHHHHH
Q 014716 280 IAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFG-VGHMGTIFNTIAIASPVGSYVCSVRIIGY 358 (420)
Q Consensus 280 ~~i~~~~~~~~~l~l~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~l~g~ 358 (420)
+.++..+.+++.+.+............++.|++.|..++...+.+.+..+ ++++++..++.+....++. .++|.+.|.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~gp~~~G~ 344 (355)
T TIGR00896 266 VAVLAVLQLVGLCGLLFAPMHGLWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLA-ALGPLFVGV 344 (355)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 55666666666554442222222335667899999988887777766554 4567899999888888887 589999999
Q ss_pred HHHhhcC
Q 014716 359 IYDNVAS 365 (420)
Q Consensus 359 l~~~~g~ 365 (420)
+.|..|+
T Consensus 345 l~~~~g~ 351 (355)
T TIGR00896 345 LHDISGN 351 (355)
T ss_pred HHHHhcc
Confidence 9999875
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-11 Score=121.30 Aligned_cols=177 Identities=15% Similarity=0.120 Sum_probs=130.1
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHH-HHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSI-WNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
.++.+|++.+|......++..........+.+.+.+|.|+++++.++......+ ...++.+++|++.||++ ++
T Consensus 201 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g------~~ 274 (390)
T TIGR02718 201 LFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAG------LW 274 (390)
T ss_pred HHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh------HH
Confidence 467888888888777777766655666667888888899999999998887764 66788999999999994 44
Q ss_pred HHHHHHHHHHHHHHHH-HHh------cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCC-CchHHHHHHHHHHhhhHHH
Q 014716 278 SFIAITLATMSVGHIV-VAS------GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGV-GHMGTIFNTIAIASPVGSY 349 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~-l~~------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~ 349 (420)
..+.++..+.++..+. ... .+...++....+.+++.|..++...+.+++..++ +.+|+.+++.+....+|.
T Consensus 275 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~- 353 (390)
T TIGR02718 275 RTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGE- 353 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHH-
Confidence 4455454444222222 211 1111223333445667787778888888888776 789999999999999999
Q ss_pred HhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 014716 350 VCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 350 ~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
.++|.+.|.++|..| |+..|++.+++.+++.+.
T Consensus 354 ~~g~~~~G~l~~~~G------------~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 354 LIASSIAGYLTDRFG------------YAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHc------------cHHHHHHHHHHHHHHHHH
Confidence 589999999999888 889998888777766543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-13 Score=135.51 Aligned_cols=176 Identities=16% Similarity=0.121 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHH
Q 014716 205 TLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 284 (420)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~ 284 (420)
.+.+|...+...+.......+....|++.+ .|.++.+.++..+...++..++.++.|+++||+ +||..+..+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~------g~~~~~~~~~ 98 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS------NPRVFLPAGL 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc------CCceehHHHH
Confidence 344444444444444333344556676654 699999999999999999999999999999999 5555677777
Q ss_pred HHHHHHHHHHHh-----cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHH
Q 014716 285 ATMSVGHIVVAS-----GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 359 (420)
Q Consensus 285 ~~~~~~~l~l~~-----~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l 359 (420)
++.+++.+++.. .+...+.+..++.|++.|..++.....+.|.+|+++||++.|+.+.+..+|+. +++.+.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~-~~~~l~~~~ 177 (438)
T TIGR00712 99 ILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGG-IPPLLVLLG 177 (438)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhH-HHHHHHHHH
Confidence 777777665542 12234556677889999988888889999999999999999999999999984 677777765
Q ss_pred HHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 360 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 360 ~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
.+...+ |+..|++.++++++..++.+++.
T Consensus 178 ~~~~~~-----------w~~~f~~~~~~~~i~~~~~~~~~ 206 (438)
T TIGR00712 178 MAWFND-----------WHAALYFPAICAIIVALFAFAMM 206 (438)
T ss_pred HHHhhh-----------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 554322 99999999888887665555443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.1e-13 Score=131.88 Aligned_cols=161 Identities=13% Similarity=0.070 Sum_probs=135.4
Q ss_pred hcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-h
Q 014716 218 GMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-S 296 (420)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~ 296 (420)
.......+...+|.+.+++|.+....++.++.+.++..++.+++|+++||+ +||+++..+..+.+++.++.. .
T Consensus 28 ~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~------Grr~~l~~~~~~~~~~~~~~~~a 101 (413)
T PRK15403 28 AYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI------GRRPVLITGALIFTLACAATLFT 101 (413)
T ss_pred HHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc------CchHHHHHHHHHHHHHHHHHHHc
Confidence 334445567788888889999999999999999999999999999999999 666778888888888877766 5
Q ss_pred cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccc
Q 014716 297 GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHC 376 (420)
Q Consensus 297 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~ 376 (420)
.+...+++.+++.|++.+...+...+++.|.+++++++++.++.+.+..+|. +++|.+++.+.+..+
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~lg~~l~~~~g------------ 168 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAP-IIGPLSGAALMHFVH------------ 168 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcC------------
Confidence 5666788899999998887667777889999999999999999999999998 588999988887767
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 014716 377 FMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 377 ~~~~f~i~~~~~~~~~~~~~~ 397 (420)
|++.|++.+++.+++.+..+.
T Consensus 169 w~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 169 WKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888777655443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.7e-13 Score=130.53 Aligned_cols=174 Identities=14% Similarity=0.109 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccc-----hhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSA-----INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 280 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~ 280 (420)
+.+..+++..++.......+...+|.+.++.|.+..+ .++..++..+...++.++.|+++||+ +||..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~ 87 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK------GRKIML 87 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------CcHHHH
Confidence 3566666666666666566777899999999888654 37788889999999999999999999 666677
Q ss_pred HHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHH
Q 014716 281 AITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 359 (420)
Q Consensus 281 ~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l 359 (420)
..+.++.+++.+++. ..+...+++..++.|++.+ ..+....++.+.+++++|+++.++.+.+..+|. +++|.+.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~l 165 (408)
T PRK09874 88 LRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGA-LLGPLAGGLL 165 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 777777777776655 4555667778888888754 456777888999999999999999999999998 5889999999
Q ss_pred HHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 360 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 360 ~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
.+..+ |+++|++.+++.+++.+...+..
T Consensus 166 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 193 (408)
T PRK09874 166 ADSYG------------LRPVFFITASVLFLCFLVTLFCI 193 (408)
T ss_pred HHHhC------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 98877 99999999888777766554443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-12 Score=126.12 Aligned_cols=179 Identities=13% Similarity=0.139 Sum_probs=134.7
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc----CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCC
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL----GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW 274 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~ 274 (420)
..+.+|++++|...+..++..........+.+.+.++. +.+....+...++..+...++.+..|++.||+
T Consensus 208 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~------ 281 (396)
T TIGR00882 208 ALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI------ 281 (396)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 47788999988776665554444444555677777654 34455667788888888999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHH-HHHHhhhHHHHhh
Q 014716 275 ERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNT-IAIASPVGSYVCS 352 (420)
Q Consensus 275 ~r~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~~~ 352 (420)
++|..+.++..+.++...+.. ..+...+++..++.|++..........+..+.++++.+++..+. .+....+|. +++
T Consensus 282 g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~-~~~ 360 (396)
T TIGR00882 282 GAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAM-IFL 360 (396)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHH-HHH
Confidence 555566777777777666544 44555666777778888777666666777888888888887777 578888998 588
Q ss_pred hHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHH
Q 014716 353 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAF 396 (420)
Q Consensus 353 ~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~ 396 (420)
+.+.|++.|..| |+.+|.+.+++.++..++..
T Consensus 361 ~~l~G~l~~~~G------------~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 361 STLAGNMYDSIG------------FQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHhHHHHHHhcc------------cHHHHHHHHHHHHHHHHHHH
Confidence 999999999888 99999999888877766543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.3e-12 Score=125.69 Aligned_cols=174 Identities=11% Similarity=0.111 Sum_probs=108.8
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhh-hccHHHHHHHcCCCccchhHHHHHHH-HHHHHhHhhhhhhhHhHhhhcCCCh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLAT-VNNISQIGESLGYPTSAINSLVSLWS-IWNFLGRFGGGYVSDIVLHRMGWER 276 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~ig~~~~G~lsDr~~~~~~~~r 276 (420)
.++.+|++.+|..++..++........ ....+++.++.|+++++.+++....+ ++..++.+++|++.||++ +
T Consensus 202 ~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g------~ 275 (402)
T PRK11902 202 LRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLG------L 275 (402)
T ss_pred HHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh------H
Confidence 467888998887776655544332222 23344555567999988988876655 468899999999999994 3
Q ss_pred hHHHHHHHHHHHHHHHH---HHh-c-CchhHHHHHH----HHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhH
Q 014716 277 PSFIAITLATMSVGHIV---VAS-G-FPGNLYVGSI----IVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVG 347 (420)
Q Consensus 277 ~~~~~i~~~~~~~~~l~---l~~-~-~~~~l~~~~~----l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 347 (420)
+..+.++..+..+..+. +.. . +...+....+ ..|++.+...+....++.+.+|. +.+++.+....++
T Consensus 276 ~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~ 351 (402)
T PRK11902 276 YRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSA----TQYALLSALASVG 351 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHHH
Confidence 34444444443433322 222 2 2233333333 33444555555555666666654 4455555555666
Q ss_pred HHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHH
Q 014716 348 SYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 395 (420)
Q Consensus 348 ~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~ 395 (420)
.. .++.++|.++|..| |+..|.+.+.++++++++.
T Consensus 352 ~~-~~~~~~G~l~~~~G------------~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 352 RV-YVGPTSGYLVEAYG------------WPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HH-HHHHHHHHHHHHhC------------hHHHHHHHHHHHHHHHHHH
Confidence 64 34568999999998 9999999888887776553
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7e-13 Score=131.34 Aligned_cols=159 Identities=13% Similarity=0.087 Sum_probs=132.7
Q ss_pred HHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHH
Q 014716 208 FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATM 287 (420)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~ 287 (420)
+...++..++............|.+.++.|.++.+.++..+...++..++.++.|+++||+ +||+.+.++.++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~------g~r~~l~~~~~~~ 93 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF------GRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CChHHHHHHHHHH
Confidence 3444444444444444556677888888899999999999999999999999999999999 7778888888888
Q ss_pred HHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCC
Q 014716 288 SVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASG 366 (420)
Q Consensus 288 ~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~ 366 (420)
+++.+... ..+...+++..++.|++.|...+....++.|.+|+++|+++.++...+..+|. ++++.+.+.+.+..+
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~-~~~~~l~~~l~~~~~-- 170 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGN-IIAAYFMPSFAEAYG-- 170 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHH-HHHHHHHHHHcccCC--
Confidence 88887766 45666788899999999999999999999999999999999999999999998 578888888877766
Q ss_pred CCCccccccccHHHHHHHH
Q 014716 367 EGNSCNGTHCFMLSFLIMA 385 (420)
Q Consensus 367 ~~~~c~g~~~~~~~f~i~~ 385 (420)
|++.|++..
T Consensus 171 ----------w~~~f~i~~ 179 (426)
T PRK12307 171 ----------WRAAFFVGL 179 (426)
T ss_pred ----------HHHHHHHHH
Confidence 999998754
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-13 Score=130.21 Aligned_cols=158 Identities=12% Similarity=0.051 Sum_probs=126.1
Q ss_pred hhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHh-cCchh
Q 014716 223 LATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVAS-GFPGN 301 (420)
Q Consensus 223 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~-~~~~~ 301 (420)
..+...+|.+.+++|.+..+.+++.+.+.++..++.+..|+++||+ +||.++.........+.+.... .+...
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~------grr~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA------FKRWFLFGSLATFAAAAGRLLDPFNYEW 81 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 4466788999999999999999999999999999999999999999 5555555444444444332232 56677
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHH
Q 014716 302 LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSF 381 (420)
Q Consensus 302 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f 381 (420)
+++.+++.|++.+.. ......++|.+|+++|+++.++.+.+..+|. ++++.+.+.+.+..| ||+.|
T Consensus 82 l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~-~l~~~~~~~l~~~~g------------Wr~~f 147 (368)
T TIGR00903 82 LLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGI-IFALAAGLKIYTAGG------------LQLLI 147 (368)
T ss_pred HHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccc------------hHHHH
Confidence 899999999999864 4555666999999999999999999999999 588999999988777 99999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014716 382 LIMASVAFVGCLVAFLLFI 400 (420)
Q Consensus 382 ~i~~~~~~~~~~~~~~~~~ 400 (420)
++.+++.++..++.+...+
T Consensus 148 ~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 148 IPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 9988887777665544433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.6e-13 Score=129.38 Aligned_cols=170 Identities=15% Similarity=0.178 Sum_probs=137.5
Q ss_pred HHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHH
Q 014716 208 FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATM 287 (420)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~ 287 (420)
.+......++.......+...+|.+.+++|.++.+.++..+...++..++.++.|+++||+ +||+.+.++..+.
T Consensus 10 l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~------grr~~~~~~~~~~ 83 (394)
T PRK11652 10 LFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV------GRRPVILVGMSIF 83 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc------CChHHHHHHHHHH
Confidence 3444444445555555566778999999999999999999999999999999999999999 6667777777777
Q ss_pred HHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCC
Q 014716 288 SVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASG 366 (420)
Q Consensus 288 ~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~ 366 (420)
+++.+... ..+...+++..++.|++.+...+....+..|.++.++++.+.++.+++..++. +++|.+.+.+.+..+
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~i~~~l~~~~g-- 160 (394)
T PRK11652 84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSP-LLAPLIGGLLTTLFG-- 160 (394)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccC--
Confidence 77776655 45566678888899999888777788888999998999999999999999998 589999999988777
Q ss_pred CCCccccccccHHHHHHHHHHHHHHHHHHH
Q 014716 367 EGNSCNGTHCFMLSFLIMASVAFVGCLVAF 396 (420)
Q Consensus 367 ~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~ 396 (420)
|++.|++.+++.++..++..
T Consensus 161 ----------~~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK11652 161 ----------WRACYLFLLLLGAGVTFSMA 180 (394)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHH
Confidence 99999988777665544433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.5e-13 Score=130.14 Aligned_cols=169 Identities=14% Similarity=0.144 Sum_probs=139.6
Q ss_pred HHHHHHHHHhcccchhhhccHHHHH-HHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHH
Q 014716 209 WLLFVAMLCGMGSGLATVNNISQIG-ESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATM 287 (420)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~ 287 (420)
+.++...++...+...+...++.++ +++|++..+.++..+...+...+.++++|+++||+ +||..+.++..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~------g~k~~l~~~~~~~ 86 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF------GAKPMIVTGMLMR 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh------CchHHHHHHHHHH
Confidence 5555666666666666666667665 56699999999999999999999999999999999 6777888888888
Q ss_pred HHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCC
Q 014716 288 SVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASG 366 (420)
Q Consensus 288 ~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~ 366 (420)
+++++.+. .++.+.+++..++.|++.+...+...+++.+.+|+++|+++.|+.+....+|. .++|.++|.+. ..+
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~-~ig~~l~g~l~-~~g-- 162 (400)
T PRK11646 87 AAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGA-VIGALLGSWLL-QYD-- 162 (400)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-Hhh--
Confidence 88888776 45556678888889999888888889999999999999999999999999999 58999999998 556
Q ss_pred CCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 014716 367 EGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 367 ~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
|++.|++.+++++++.++..+
T Consensus 163 ----------~~~~f~~~~~~~~~~~i~~~~ 183 (400)
T PRK11646 163 ----------FRLVCATGAVLFVLAAAFNAW 183 (400)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999888777766554433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=131.43 Aligned_cols=176 Identities=15% Similarity=0.180 Sum_probs=140.0
Q ss_pred HHHhhCH-HHHHHHHHHHHhcccchhhhccHHHHHH-HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHh-HhhhcCCCh
Q 014716 200 LQSVCTL-NFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDI-VLHRMGWER 276 (420)
Q Consensus 200 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr-~~~~~~~~r 276 (420)
.+.++++ .+|..+...++...+.+.+..+++.|++ ++|++..+++...+.+........+++|+++|| + +|
T Consensus 14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~------G~ 87 (500)
T PRK09584 14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVL------GT 87 (500)
T ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------ch
Confidence 4555665 5888888888888887888888888885 569998888888877776666667889999999 6 66
Q ss_pred hHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCc--hHHHHHHHHHHhhhHHHHhh
Q 014716 277 PSFIAITLATMSVGHIVVASG--FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGH--MGTIFNTIAIASPVGSYVCS 352 (420)
Q Consensus 277 ~~~~~i~~~~~~~~~l~l~~~--~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~~~~ 352 (420)
|..+.++.++.+++.+++... ....+++..++.|++.|...+...+++.+.||+++ ++.++++.+.+.++|+ +++
T Consensus 88 r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~-~~g 166 (500)
T PRK09584 88 KRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGS-FFS 166 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHH-HHH
Confidence 677888888888887776632 23345666788899999888888999999998654 4567888899999999 599
Q ss_pred hHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 014716 353 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 353 ~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
|.+.|++.|..| |++.|.+.++..+++++.
T Consensus 167 p~i~g~l~~~~g------------~~~~F~i~~i~~~i~~i~ 196 (500)
T PRK09584 167 MLATPWLAAKYG------------WSVAFALSVVGMLITVVN 196 (500)
T ss_pred HHHHHHHHHhhC------------HHHHHHHHHHHHHHHHHH
Confidence 999999999887 999999887766666544
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-13 Score=131.17 Aligned_cols=157 Identities=11% Similarity=0.198 Sum_probs=135.4
Q ss_pred hhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchh
Q 014716 223 LATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGN 301 (420)
Q Consensus 223 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~ 301 (420)
..+...+|.+.+++|.+..+.++..+...++..+++++.|+++||+ +||..+..+..+.+++.+.+. ..+...
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~------g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 81 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF------GRKPVILGGTLVFALAAVACALAQTIDQ 81 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc------CChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 3456788899999999999999999999999999999999999999 666778888888888777766 455666
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHH
Q 014716 302 LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSF 381 (420)
Q Consensus 302 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f 381 (420)
+++..++.|++.+...+...+++.|.+++++|+++.++.+.+..+|. .++|.+.+.+.+..+ |++.|
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~------------~~~~~ 148 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAP-LLAPIIGGWLLVWFS------------WHAIF 148 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcC------------hHHHH
Confidence 78888899999999989999999999999999999999999999998 589999999998877 99999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014716 382 LIMASVAFVGCLVAFLL 398 (420)
Q Consensus 382 ~i~~~~~~~~~~~~~~~ 398 (420)
++.++++++..++..+.
T Consensus 149 ~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 149 WVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 98888877766554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=127.92 Aligned_cols=171 Identities=12% Similarity=0.138 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 285 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~ 285 (420)
+-+|..++..++...........+|.+.++.|+|..+.++..+...++..++.+++|+++||+ +||..+..+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~------g~r~~~~~~~~ 80 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII------PLKRQLIFGFA 80 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHH
Confidence 356666666666655556677778999999999999999999999999999999999999999 66667777777
Q ss_pred HHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhc
Q 014716 286 TMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 364 (420)
Q Consensus 286 ~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g 364 (420)
+.+++.+++. .++...+++..++.|++.|...+...+++.|.+|+++|+...++.+....+|+ .++|.+.+.+.+...
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~ 159 (394)
T PRK03699 81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAG-MIFPIIAAYLLARSI 159 (394)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccc
Confidence 7777777666 44556677888999999998888889999999999999999999988888888 477888888876433
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHHHHH
Q 014716 365 SGEGNSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 365 ~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
+ ||+.|.+.+++.++..++
T Consensus 160 g-----------w~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 160 E-----------WYWVYACIGLVYVAIFIL 178 (394)
T ss_pred c-----------HHHHHHHHHHHHHHHHHH
Confidence 3 999999888777665544
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.4e-13 Score=131.95 Aligned_cols=156 Identities=17% Similarity=0.126 Sum_probs=120.6
Q ss_pred hccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHhc-----Cch
Q 014716 226 VNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASG-----FPG 300 (420)
Q Consensus 226 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~~-----~~~ 300 (420)
...+|++.++ |++..+.++..+...++..++.+++|+++||+ +||.++.++.++.+++.+.+... +..
T Consensus 49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~------g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 121 (452)
T PRK11273 49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS------NPRVFLPAGLILAAAVMLFMGFVPWATSSIA 121 (452)
T ss_pred HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc------CCchhHHHHHHHHHHHHHHHHhhhcccccHH
Confidence 4566777666 99999999999999999999999999999999 66677888888877777765521 333
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHH
Q 014716 301 NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLS 380 (420)
Q Consensus 301 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~ 380 (420)
.+++..++.|++.|..++.....+.+.+|+++|+++.|+.+.+..+|..+.+|++...+....+ |++.
T Consensus 122 ~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g------------w~~~ 189 (452)
T PRK11273 122 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND------------WHAA 189 (452)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc------------HHHH
Confidence 4667778889999888888888899999999999999999999999874455544333333334 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014716 381 FLIMASVAFVGCLVAFLLFI 400 (420)
Q Consensus 381 f~i~~~~~~~~~~~~~~~~~ 400 (420)
|++.++++++..++..++.+
T Consensus 190 f~i~~~~~~~~~~l~~~~~~ 209 (452)
T PRK11273 190 LYMPAFAAILVALFAFAMMR 209 (452)
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 99988877776555444433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=131.79 Aligned_cols=147 Identities=18% Similarity=0.254 Sum_probs=110.2
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHH-HHcCCC-ccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIG-ESLGYP-TSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s-~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
++.++++.+|..++..++..........++|.+. ++.|++ ..+.+...++..+...+++++.|+++||++ ++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~ 273 (352)
T PF07690_consen 200 KSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFG------RR 273 (352)
T ss_dssp THHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------CH
T ss_pred ccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------cH
Confidence 4566667777555555555555566788888884 556999 788888999999999999999999999984 33
Q ss_pred HHHHHHHHHHHHHHHHHH----hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhh
Q 014716 278 SFIAITLATMSVGHIVVA----SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 353 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~----~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 353 (420)
....+......+..+.+. ..+....+...++.|++.+...+...+++.+.+|++++|++.|+.+....+|. .++|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~-~igP 352 (352)
T PF07690_consen 274 RRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGG-IIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHCC
Confidence 333444444444443332 22334566677889999999999999999999999999999999999999998 4665
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-13 Score=131.77 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=131.4
Q ss_pred chhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCch
Q 014716 222 GLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPG 300 (420)
Q Consensus 222 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~ 300 (420)
........|.+.++.|.+..+.+++.+...++..++.++.|+++||+ +||..+..+.++.+++.+++. ..+..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (398)
T TIGR00895 33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI------GRKRVLLWSILLFSVFTLLCALATNVT 106 (398)
T ss_pred HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHccchH
Confidence 34456678888888999999999999999999999999999999999 666777777777777776665 45556
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHH
Q 014716 301 NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLS 380 (420)
Q Consensus 301 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~ 380 (420)
.+++..++.|++.+...+...+++.|.+|+++|+++.|+.+.+..+|. .+++.+.+.+.+..+ |+..
T Consensus 107 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~g------------~~~~ 173 (398)
T TIGR00895 107 QLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGA-AVGGFLAGWLIPVFG------------WRSL 173 (398)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHH-HHHHHHHHHHhhccc------------ceee
Confidence 677888899999999999999999999999999999999999999999 588999999988777 8899
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014716 381 FLIMASVAFVGCLVAFL 397 (420)
Q Consensus 381 f~i~~~~~~~~~~~~~~ 397 (420)
|++.++++++..++...
T Consensus 174 ~~~~~~~~~~~~~~~~~ 190 (398)
T TIGR00895 174 FYVGGIAPLLLLLLLMR 190 (398)
T ss_pred hhhhhhHHHHHHHHHHH
Confidence 98887666555544433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=129.26 Aligned_cols=158 Identities=9% Similarity=0.037 Sum_probs=131.3
Q ss_pred cchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCc
Q 014716 221 SGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFP 299 (420)
Q Consensus 221 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~ 299 (420)
....+...+|.+.+++|.++.+.++..+.+.++..++.++.|+++||+ +||+++.++..+.+++.+.+. ..+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~------g~r~~l~~~~~~~~~~~~~~~~~~~~ 101 (406)
T PRK15402 28 ANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI------GRRPVMLAGVAFFILTCLAILLAQSI 101 (406)
T ss_pred hhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CChHHHHHHHHHHHHHHHHHHHHccH
Confidence 344566678888889999999999999999999999999999999999 666777777777777776655 4556
Q ss_pred hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHH
Q 014716 300 GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFML 379 (420)
Q Consensus 300 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~ 379 (420)
..+++..++.|++.+...+...+.+.|.++++++++..++......++. .++|.+.+.+.+..+ |++
T Consensus 102 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~i~~~l~~~~~------------w~~ 168 (406)
T PRK15402 102 EQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAP-LLGPLVGAALIHVLP------------WRG 168 (406)
T ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccC------------ccH
Confidence 6678888999999888888888999999999999999998887777787 588999999888766 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014716 380 SFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 380 ~f~i~~~~~~~~~~~~~~ 397 (420)
.|++.+++++++.+....
T Consensus 169 ~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 169 MFVLFAALAALSFFGLWR 186 (406)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999988888777655443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-12 Score=130.30 Aligned_cols=171 Identities=19% Similarity=0.260 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 284 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~ 284 (420)
+.+|.++...+....+.+++..++|.|+++ +|+++.+++.+...+.....++.+++|+++||+. |||..+.++.
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRil-----Grrr~iliG~ 83 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVL-----GNRMAVMLGA 83 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CcHHHHHHHH
Confidence 467777777777777778888899998875 4999999999999999999999999999999982 4445677888
Q ss_pred HHHHHHHHHHHhc--CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCC--chHHHHHHHHHHhhhHHHHhhhHHHHHHH
Q 014716 285 ATMSVGHIVVASG--FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVG--HMGTIFNTIAIASPVGSYVCSVRIIGYIY 360 (420)
Q Consensus 285 ~~~~~~~l~l~~~--~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~~~~~~l~g~l~ 360 (420)
++.+++.+++... +...+++...+.+++.|...+..+++++|.||++ .|++++++.+.+.++|+ .++|.+.|++.
T Consensus 84 il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~-~iap~l~g~L~ 162 (493)
T PRK15462 84 LLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGS-IIAPIACGYAQ 162 (493)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHH-HHHHHHHHHHH
Confidence 8888887766532 2233455555666778887788889999999986 69999999999999999 58999999999
Q ss_pred HhhcCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 014716 361 DNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 361 ~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
+..| |++.|.+.++..+++++.
T Consensus 163 ~~~G------------w~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 163 EEYS------------WAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred hhhC------------hHHHHHHHHHHHHHHHHH
Confidence 8887 999999877655555544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=130.47 Aligned_cols=177 Identities=11% Similarity=0.104 Sum_probs=125.1
Q ss_pred HHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHH
Q 014716 211 LFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVG 290 (420)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~ 290 (420)
.++..++.....+.....+|.+.+++|++..+.++..+.+.++..++.++.|+++||+ +||+.+.++.++.+++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~------G~r~~~~~~~~~~~~~ 114 (476)
T PLN00028 41 SWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY------GPRYGSAFLLMLTAPA 114 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CChHHHHHHHHHHHHH
Confidence 3333444444344555667788889999999999998899999999999999999999 6667777777777777
Q ss_pred HHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCC
Q 014716 291 HIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGN 369 (420)
Q Consensus 291 ~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~ 369 (420)
.++.. ..+...+++..++.|++.+... ....++++.+|+++||++.|+.+....+|. .+++.+.+.+.+.... .
T Consensus 115 ~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~-~~~~~~~~~i~~~~~~---~ 189 (476)
T PLN00028 115 VFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGG-GVTQLLMPLVFPLIKD---A 189 (476)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh---c
Confidence 77665 4555667777888898887654 455678999999999999999977666666 3555555544332110 0
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 370 SCNGTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 370 ~c~g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
.+.+...||++|++.++++++..++.+++
T Consensus 190 ~~~~~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 190 GAPSFTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 01111239999999988887766554443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.5e-13 Score=128.60 Aligned_cols=178 Identities=15% Similarity=0.166 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHhcccchhhhccHHH-HHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHH
Q 014716 207 NFWLLFVAMLCGMGSGLATVNNISQ-IGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 285 (420)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~ 285 (420)
.+|..++..++.......+...+|+ +.+++|++..+.++..+...++..++.+++|+++||+ +||..+.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~ 75 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF------GPRYTTTLSLL 75 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh------CchHHHHHHHH
Confidence 5677788888777777788888996 6678899999999999999999999999999999999 66677888888
Q ss_pred HHHHHHHHHH-hc-CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhh
Q 014716 286 TMSVGHIVVA-SG-FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV 363 (420)
Q Consensus 286 ~~~~~~l~l~-~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~ 363 (420)
+.+++.+++. .. +...+++..++.|++.+. +.....++++.+|+++|+++.++......+|. .+++.+.+.+....
T Consensus 76 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~i~~~l~~~~ 153 (366)
T TIGR00886 76 LLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGG-GVAQFVMPPIIGSL 153 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHH-HHHHHHHHHHHHHH
Confidence 8888877766 44 566677888889988554 56678899999999999999999886666666 35555555554422
Q ss_pred cCCCCCccccccccHHHHH-HHHHHHHHHHHH
Q 014716 364 ASGEGNSCNGTHCFMLSFL-IMASVAFVGCLV 394 (420)
Q Consensus 364 g~~~~~~c~g~~~~~~~f~-i~~~~~~~~~~~ 394 (420)
..+. ...+...|++.|+ ..+++..+..++
T Consensus 154 ~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~ 183 (366)
T TIGR00886 154 IFGA--GLPAHLAWGWAFVIVPAGILLLPALL 183 (366)
T ss_pred Hhcc--cccccccccchhHHHHHHHHHHHHHH
Confidence 1000 0001112899984 434444443333
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-12 Score=124.90 Aligned_cols=168 Identities=21% Similarity=0.316 Sum_probs=142.3
Q ss_pred HHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHH
Q 014716 210 LLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSV 289 (420)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~ 289 (420)
......++............|.+.++.|.+..+.++..+...++..++.++.|+++||+ +||+.+.++..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~------g~r~~~~~~~~~~~~ 76 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF------GRRRVLLLGLLLFAL 76 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh------CCchhhHHHHHHHHH
Confidence 34455555555556677788899999999999999999999999999999999999999 566678888888888
Q ss_pred HHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCC
Q 014716 290 GHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEG 368 (420)
Q Consensus 290 ~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~ 368 (420)
+.+.+. ..+...+++..++.|++.+...+...+++.|.+|+++|++..++.+....+|. .+++.+.+.+.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~---- 151 (352)
T cd06174 77 GSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGA-LLGPLLGGLLAESLG---- 151 (352)
T ss_pred HHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhh----
Confidence 877766 45666788889999999999999999999999999999999999999999999 589999999998877
Q ss_pred CccccccccHHHHHHHHHHHHHHHHHHH
Q 014716 369 NSCNGTHCFMLSFLIMASVAFVGCLVAF 396 (420)
Q Consensus 369 ~~c~g~~~~~~~f~i~~~~~~~~~~~~~ 396 (420)
|++.|++.+.+.+++.+...
T Consensus 152 --------~~~~~~~~~~~~~~~~~~~~ 171 (352)
T cd06174 152 --------WRWLFLILAILGLLLALLLL 171 (352)
T ss_pred --------HHHHHHHHHHHHHHHHHHHH
Confidence 99999988877777665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-12 Score=124.67 Aligned_cols=157 Identities=10% Similarity=0.033 Sum_probs=108.6
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhH
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 278 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~ 278 (420)
.++.+|++++|...+...+.......+..+.|.+.++.|++..+.++......++..+|+.+.+++.||+++| .
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~------~ 269 (401)
T PRK11043 196 FKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGE------Q 269 (401)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------H
Confidence 4667788888766655555544445566778888888899988899888888888999999999999998543 3
Q ss_pred HHHHHHHHHH---HHHHHHHh---cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhh
Q 014716 279 FIAITLATMS---VGHIVVAS---GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCS 352 (420)
Q Consensus 279 ~~~i~~~~~~---~~~l~l~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~ 352 (420)
.........+ +....... .+.....+...+.|++.+..++...+...+..| +++|++.|+.+.....++ ..+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~-~~~ 347 (401)
T PRK11043 270 LLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLC-FLA 347 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHH-HHH
Confidence 2222222222 22222221 222234445566788888888888777777776 679999999988777776 467
Q ss_pred hHHHHHHHHhh
Q 014716 353 VRIIGYIYDNV 363 (420)
Q Consensus 353 ~~l~g~l~~~~ 363 (420)
+.+.|.+.|..
T Consensus 348 ~~~~g~l~~~~ 358 (401)
T PRK11043 348 SLLVSALISTP 358 (401)
T ss_pred HHHHHHccCCC
Confidence 78888887643
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.3e-14 Score=135.35 Aligned_cols=162 Identities=19% Similarity=0.175 Sum_probs=132.2
Q ss_pred hcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-h
Q 014716 218 GMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-S 296 (420)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~ 296 (420)
.......+....|++.+++|++..+.+++.+...++..++.++.|+++||+ +||+.+.++.++.+++.+++. .
T Consensus 7 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~~~~~~~~~~~~ 80 (379)
T TIGR00881 7 YYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS------NPRVFLPIGLILCAIVNLFFGFS 80 (379)
T ss_pred HHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh------CCeehhHHHHHHHHHHHHHHHHh
Confidence 333445566678888888899999999999999999999999999999999 666678888888888777766 4
Q ss_pred cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhh-HHHHHHHHhhcCCCCCcccccc
Q 014716 297 GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV-RIIGYIYDNVASGEGNSCNGTH 375 (420)
Q Consensus 297 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~-~l~g~l~~~~g~~~~~~c~g~~ 375 (420)
.+...+++..++.|++.+...+...+++.|.+|+++|++..++.+.+..+|. ++++ .+.+.+.+..+
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~----------- 148 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGG-GLLPPLVLFGIAELYS----------- 148 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHH-HHHHHHHHHHHHhcCC-----------
Confidence 5566778889999999999999999999999999999999999999999998 4777 45555655555
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Q 014716 376 CFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 376 ~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
|++.|++.++++++..++.++.
T Consensus 149 -~~~~~~~~~~~~~~~~~~~~~~ 170 (379)
T TIGR00881 149 -WHWVFIVPGIIAIIVSLICFLL 170 (379)
T ss_pred -chhHHHHHHHHHHHHHHHHhee
Confidence 9999998887776655554433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.9e-11 Score=118.92 Aligned_cols=321 Identities=9% Similarity=-0.041 Sum_probs=175.4
Q ss_pred eeeecC--CCccccchhHhhhhhhccchHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHhheeeecCCCC--Cccch
Q 014716 3 YFLEYN--RIPFFFFLPLSTVQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVRIHGTNS--ADDKK 78 (420)
Q Consensus 3 ~~~~~~--r~~~~~~~~~g~~~~~~gLs~~i~~~~~~~~~~~~~~~~~~~l~~~p~~i~~~~~~~~~~~p~~~--~~~~~ 78 (420)
.||+++ |+++ .++....+.+|+++++.+++.+-+...|++.|+++.+...++++.....+...++. +.+++
T Consensus 133 ~~p~~~~~~~~~-----~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (489)
T PRK10207 133 CYPPKDPRLDGA-----FTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHK 207 (489)
T ss_pred hcCCCchhhhcc-----hhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCcc
Confidence 467764 5777 89999999999999999999998888999999987543443333333333222221 11122
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCcccCCCCCCCCCCCC
Q 014716 79 HLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLLSSPLGIAIKAQREDTTRLSPTFATQRSPLVDCPETT 158 (420)
Q Consensus 79 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ll~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (420)
.+|..+.+....+...+......... ..+...+...+..++.+..++. .++ +.
T Consensus 208 ~~d~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~f~~-~~~--------~~----------------- 260 (489)
T PRK10207 208 PMSFSKLLLVLLGSVVMIFVCAWLMH-NVEVANLVLIVLSIVVTIIFFR-EAF--------KL----------------- 260 (489)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHH-HHh--------cC-----------------
Confidence 35655543322222222211111100 1111122222222222222211 110 00
Q ss_pred cccccCCCCCcccccCCCCCcccchhhhccccccccccCcHHHHhhCHHHHHHH--HHHHHhcccchhhhccHHHHHHH-
Q 014716 159 TSTKFSASQDSVAYHELPGEESQVKAEFDDKKLKDEEDMNILQSVCTLNFWLLF--VAMLCGMGSGLATVNNISQIGES- 235 (420)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~- 235 (420)
.+.+|++.+-... +...+.+.......+.++.+.++
T Consensus 261 -----------------------------------------~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~ 299 (489)
T PRK10207 261 -----------------------------------------DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINN 299 (489)
T ss_pred -----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHh
Confidence 0112233322222 11222333333344566666664
Q ss_pred cCCCc----cchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcC-CChhHHHHHHHHHHHHHHHHH-------Hh----cCc
Q 014716 236 LGYPT----SAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMG-WERPSFIAITLATMSVGHIVV-------AS----GFP 299 (420)
Q Consensus 236 ~g~s~----~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~-~~r~~~~~i~~~~~~~~~l~l-------~~----~~~ 299 (420)
.+.+. -....+.++.++...+..++.|++.||+++|+. .+...-+.+++++.+++++.+ .. .+.
T Consensus 300 ~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~ 379 (489)
T PRK10207 300 VHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSP 379 (489)
T ss_pred ccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCH
Confidence 22221 123455566677787888889999999987652 222233455666666665422 11 123
Q ss_pred hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHH
Q 014716 300 GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFML 379 (420)
Q Consensus 300 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~ 379 (420)
+++....++.|+|.+...++..+.+.+..|++..|.++|+.++...+|.. ++..+.+........ .+.. ....-|.+
T Consensus 380 ~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~-lg~~l~~~~~~~~~~-~~~~-~~~~~~~~ 456 (489)
T PRK10207 380 WFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFL-LGGYVATFTAVPDNI-TDPL-ETLPVYTN 456 (489)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccccc-ccch-hhhhhHHH
Confidence 44667788899999999999999999999999999999999999999884 665555544210000 0000 00111567
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014716 380 SFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 380 ~f~i~~~~~~~~~~~~~~~~ 399 (420)
.|...++.++++.++.++..
T Consensus 457 ~f~~~~~~~~~~~v~~~~~~ 476 (489)
T PRK10207 457 VFGKIGLVTLGVAVVMALMV 476 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777766665544433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=130.99 Aligned_cols=168 Identities=12% Similarity=0.161 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHH-HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHh-HhhhcCCChhHHHHHH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDI-VLHRMGWERPSFIAIT 283 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr-~~~~~~~~r~~~~~i~ 283 (420)
+.+|.++...++...+.+++...++.|++ ++|++..++++..+.+.....+..+++|+++|| + |||..+.++
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~------G~r~~~~~g 87 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLL------GTKRTIVLG 87 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhcc------chHHHHHHH
Confidence 46788877777777777777777777776 569999999999999998888889999999999 8 777889999
Q ss_pred HHHHHHHHHHHHh-cCch-hHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCc--hHHHHHHHHHHhhhHHHHhhhHHHHHH
Q 014716 284 LATMSVGHIVVAS-GFPG-NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGH--MGTIFNTIAIASPVGSYVCSVRIIGYI 359 (420)
Q Consensus 284 ~~~~~~~~l~l~~-~~~~-~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~~~~~~l~g~l 359 (420)
.++.+++.+.+.. .+.. .+++..++.|+|.|...+...+++.|.||+++ |+.++++.+++.++|+ +++|.+.|++
T Consensus 88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~-~~g~~l~g~l 166 (489)
T PRK10207 88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGS-LISLSLAPVI 166 (489)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHH-HHHHHHHHHH
Confidence 9999998887763 2323 35577888999999999999999999998874 5789999999999999 5899999999
Q ss_pred HHhhcCCCCCccccccccHHHHHHHHHHHHHHH
Q 014716 360 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGC 392 (420)
Q Consensus 360 ~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~ 392 (420)
.++.| |++.|++.++..++++
T Consensus 167 ~~~~g------------w~~~F~i~~i~~~~~~ 187 (489)
T PRK10207 167 ADKFG------------YSVTYNLCGAGLIIAL 187 (489)
T ss_pred HHhhC------------hHHHHHHHHHHHHHHH
Confidence 99887 9999998765444444
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-13 Score=130.47 Aligned_cols=161 Identities=14% Similarity=0.136 Sum_probs=130.9
Q ss_pred hcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-h
Q 014716 218 GMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-S 296 (420)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~ 296 (420)
..+..+......|.+.+++|.+..+.++..+.+.++..++.+..|+++||+ +||..+.++..+.+++.+... .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~------G~r~~~~~~~~~~~~~~~~~~~~ 88 (377)
T TIGR00890 15 TSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF------GPRAVAMLGGILYGLGFTFYAIA 88 (377)
T ss_pred HhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc------CccchhHHhHHHHHHHHHHHHHH
Confidence 333345566678899899999999999999999999999999999999999 566667788888888877766 4
Q ss_pred cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccc
Q 014716 297 GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHC 376 (420)
Q Consensus 297 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~ 376 (420)
.+...+++..++.|++.+..++.....+.+.++ ++|+++.++.+.+..+|.. +++++.+.+.+..+
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~------------ 154 (377)
T TIGR00890 89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSF-ILSPLITSVINLEG------------ 154 (377)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHh-HHHHHHHHHHhccc------------
Confidence 556667788889999999888777788888887 6799999999999999984 55567777777666
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 014716 377 FMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 377 ~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
|++.|++.++++++..+..+.+
T Consensus 155 ~~~~f~~~~~~~~~~~~~~~~~ 176 (377)
T TIGR00890 155 VPAAFIYMGIIFLLVIVLGAFL 176 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888887776655443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-11 Score=118.96 Aligned_cols=158 Identities=12% Similarity=0.039 Sum_probs=119.9
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
+++.++++.+|...+..++............+++.+.. + ++...+.+.....++.+++.+++|+++||+ +++
T Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~------g~~ 287 (437)
T TIGR00792 215 FKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF------GRK 287 (437)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CcH
Confidence 46778899999888777776655555555556665544 4 455667777788899999999999999999 555
Q ss_pred HHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhC-------CCchHHHHHHHHHHhhhHH
Q 014716 278 SFIAITLATMSVGHIVVAS--GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFG-------VGHMGTIFNTIAIASPVGS 348 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~ 348 (420)
..+.++..+.+++.+.+.. .+...+.+..++.|++.+..++..+++++|..+ ++.+|+.+|+.+....+|.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~ 367 (437)
T TIGR00792 288 ILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQ 367 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHH
Confidence 5666777676666665542 223345566677889999888889999988764 5668999999999999999
Q ss_pred HHhhhHHHHHHHHhhc
Q 014716 349 YVCSVRIIGYIYDNVA 364 (420)
Q Consensus 349 ~~~~~~l~g~l~~~~g 364 (420)
.+++.+.|.+.|..|
T Consensus 368 -~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 368 -ALAGFLVGLILGIIG 382 (437)
T ss_pred -HHHHHHHHHHHHHcC
Confidence 588999999998876
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=125.67 Aligned_cols=140 Identities=11% Similarity=0.012 Sum_probs=103.4
Q ss_pred HHHhhCHH---HHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHH-HHHHHhHhhhhhhhHhHhhhcCCC
Q 014716 200 LQSVCTLN---FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWS-IWNFLGRFGGGYVSDIVLHRMGWE 275 (420)
Q Consensus 200 ~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~ig~~~~G~lsDr~~~~~~~~ 275 (420)
++.++++. +|...+..++..........+.|.++++.|+++++.+....... +...++.+++|+++||+ +
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~------g 273 (356)
T TIGR00901 200 REFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL------N 273 (356)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh------h
Confidence 45556554 66666666666666666778889998889999989888887666 57789999999999999 4
Q ss_pred hhHHHHHHHHHHHHHHHHHH-h-----------cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHH
Q 014716 276 RPSFIAITLATMSVGHIVVA-S-----------GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIA 343 (420)
Q Consensus 276 r~~~~~i~~~~~~~~~l~l~-~-----------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 343 (420)
|+..+.++.++.+++..++. . .+...+..+.++.+++.+..++...+++.|.+|++++|+.+|+.+..
T Consensus 274 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 353 (356)
T TIGR00901 274 ILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSL 353 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 44445555555555544332 1 11233555566778999999999999999999999999999998765
Q ss_pred hh
Q 014716 344 SP 345 (420)
Q Consensus 344 ~~ 345 (420)
..
T Consensus 354 ~~ 355 (356)
T TIGR00901 354 SA 355 (356)
T ss_pred Hh
Confidence 53
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=129.01 Aligned_cols=179 Identities=11% Similarity=0.060 Sum_probs=116.3
Q ss_pred CcHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCC
Q 014716 197 MNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWE 275 (420)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~ 275 (420)
..+++.++++..|...++.++.....+++.+|+|.++++ .|++..+++.+.+.+.++.+++.+++|+++||+. ....
T Consensus 264 ~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~--~~~~ 341 (495)
T KOG2533|consen 264 KGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK--TIFA 341 (495)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh--hhHH
Confidence 457899999999999999999999999999999999998 4799999999999999999999999999999952 0004
Q ss_pred hhHHHHHHH-HHHHHHHHHHHhcC-chhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHH-HHHHHHHhhhHHHHhh
Q 014716 276 RPSFIAITL-ATMSVGHIVVASGF-PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTI-FNTIAIASPVGSYVCS 352 (420)
Q Consensus 276 r~~~~~i~~-~~~~~~~l~l~~~~-~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~-~g~~~~~~~~g~~~~~ 352 (420)
+++...... +...++.+.+...+ .............+.+...+.....+.+....+.+... .+....+...++.+.+
T Consensus 342 ~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~ 421 (495)
T KOG2533|consen 342 RRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISG 421 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhh
Confidence 445554444 44445545444322 33333333333445555556666666666654444333 3333444444443344
Q ss_pred hHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHH
Q 014716 353 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAF 389 (420)
Q Consensus 353 ~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~ 389 (420)
+...+....+++ |...|+...+.++
T Consensus 422 ~~~~~~~ap~y~------------~~~~f~~~~~~~~ 446 (495)
T KOG2533|consen 422 QLFRSLDAPRYG------------WGAVFYMLVAACV 446 (495)
T ss_pred hhcccccCcchh------------hhhHHHHHHHHHH
Confidence 434444334344 6677744443333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=131.86 Aligned_cols=162 Identities=15% Similarity=0.162 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHH
Q 014716 207 NFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT 286 (420)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~ 286 (420)
.+..+++..++...........+|.+.+++|.+..+.++..+.+.++..++.++.|+++||+ +||..+.++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~ 94 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY------GRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHH
Confidence 44455555555555555566677888888999999999999999999999999999999999 666777788888
Q ss_pred HHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcC
Q 014716 287 MSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS 365 (420)
Q Consensus 287 ~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~ 365 (420)
.+++.+++. ..+...+++..++.|++.+..++....++.|.+++++|+.+.++.+.+..+|. ++++.+.+.+.+..+
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~- 172 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGA-VVAAQVYSLVVPVWG- 172 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCC-
Confidence 888777766 45566788889999999999999999999999999999999999999999999 589999999988777
Q ss_pred CCCCccccccccHHHHHHHHHH
Q 014716 366 GEGNSCNGTHCFMLSFLIMASV 387 (420)
Q Consensus 366 ~~~~~c~g~~~~~~~f~i~~~~ 387 (420)
|++.|++.+..
T Consensus 173 -----------w~~~f~~~~~~ 183 (496)
T PRK03893 173 -----------WRALFFIGILP 183 (496)
T ss_pred -----------HHHHHHHHHHH
Confidence 99998865433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.1e-11 Score=110.55 Aligned_cols=179 Identities=11% Similarity=0.069 Sum_probs=143.1
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
.+++|++.-|.+.+.+.+.....+..+.|+|.++.|.|+|+.++|.++++..+......+..-++.+|.. ++++.
T Consensus 202 ~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~-----n~r~~ 276 (395)
T COG2807 202 RKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSK-----NQRPL 276 (395)
T ss_pred cccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc-----ccchH
Confidence 4578999999999988888889999999999999999999999999999999999999999999999842 55666
Q ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCC-CchHHHHHHHHHHhhhHHHHhhhHHHHH
Q 014716 280 IAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGV-GHMGTIFNTIAIASPVGSYVCSVRIIGY 358 (420)
Q Consensus 280 ~~i~~~~~~~~~l~l~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~l~g~ 358 (420)
.......+.++.+.+........+...++.|+|.|..++..-..+.+.... +.-+...|+.+..+.+=. .+||.+.|+
T Consensus 277 ~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllA-a~GP~l~G~ 355 (395)
T COG2807 277 VVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLA-AFGPWLFGF 355 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHH-hhhhhhHhH
Confidence 667777777777766533333344446889999999999988888876643 445666777755555555 489999999
Q ss_pred HHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHH
Q 014716 359 IYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 395 (420)
Q Consensus 359 l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~ 395 (420)
++|..|+ |+.+++..+.+.++..+..
T Consensus 356 lhDa~gs-----------w~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 356 LHDATGS-----------WSAPLVLLALATLLMLIFG 381 (395)
T ss_pred HHHhcCC-----------hHHHHHHHHHHHHHHHHHH
Confidence 9999998 9999888877776666554
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-12 Score=126.79 Aligned_cols=162 Identities=15% Similarity=0.170 Sum_probs=131.0
Q ss_pred hcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-h
Q 014716 218 GMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-S 296 (420)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~ 296 (420)
.......+...+|.+.++.|.++.+.++..+++.++..++.+++|+++||+ +||..+..+..+..++.++.. .
T Consensus 18 ~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~~~~~~~~~~~~ 91 (401)
T PRK11043 18 GFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY------GRKPVLLAGLSLFALGSLGMLWV 91 (401)
T ss_pred HHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc------CCcHHHHHHHHHHHHHHHHHHHh
Confidence 333334455556677788899999999999999999999999999999999 666677777777777776665 4
Q ss_pred cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccc
Q 014716 297 GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHC 376 (420)
Q Consensus 297 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~ 376 (420)
.+...+.+..++.|++.+...+...+++.|.+++++++...+..+....++. .++|.+.+.+.+..+
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~i~~~l~~~~g------------ 158 (401)
T PRK11043 92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSP-ALAPLLGAWLLNHFG------------ 158 (401)
T ss_pred cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC------------
Confidence 4556677788889998888777788899999999989999999888888888 588999999998877
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 014716 377 FMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 377 ~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
|++.|++.+++.++..++...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 159 WQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHc
Confidence 9999998888777766554433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-11 Score=133.97 Aligned_cols=177 Identities=12% Similarity=0.136 Sum_probs=130.0
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCcc-chhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCCh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTS-AINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 276 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~-~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r 276 (420)
+..+++++.+|...+..++.......+..++|.+.++ +|++.. ..+++.+...++.+++.++.|+++||++ +
T Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~------~ 298 (1146)
T PRK08633 225 LKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHI------E 298 (1146)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCce------E
Confidence 4567788888887777766666556667778888765 499988 8899999999999999999999999984 3
Q ss_pred hHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHH
Q 014716 277 PSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRI 355 (420)
Q Consensus 277 ~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l 355 (420)
+..+.++.++++++.+++. ..+...+.+..++.|++.+...+...+++.+.+|++.+|+++|+.++...+|. ++++.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~-~~~~~~ 377 (1146)
T PRK08633 299 LGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGM-LLFLAL 377 (1146)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHH-HHHHHH
Confidence 3445555556666555554 33444566777888999998888899999999999999999999999888888 466555
Q ss_pred HHHHHHhhc-CCCCCccccccccHHHHHHHHHHHHHHHHH
Q 014716 356 IGYIYDNVA-SGEGNSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 356 ~g~l~~~~g-~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
.+.+.. .+ . +...|++.+.++++..+.
T Consensus 378 ~~~l~~-~~~~-----------~~~~~~~~~~~~~~~~~~ 405 (1146)
T PRK08633 378 TTLFSG-LGLS-----------PAGLFYLIALVTLIGTLY 405 (1146)
T ss_pred HHHHHH-hccC-----------HHHHHHHHHHHHHHHHHH
Confidence 555433 32 1 445666655555544433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.8e-13 Score=131.67 Aligned_cols=177 Identities=16% Similarity=0.086 Sum_probs=139.7
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
+...++++++.+++..++...........+|.+.++.+.++.+.++..+...++..++.++.|+++||++| |..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~------~~~ 84 (417)
T PRK10489 11 SLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDR------KKL 84 (417)
T ss_pred HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCC------ceE
Confidence 34456888888888777776666667778899988888898999999999999999999999999999954 444
Q ss_pred HHHHHHHHHHHHHHHH------hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhh
Q 014716 280 IAITLATMSVGHIVVA------SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 353 (420)
Q Consensus 280 ~~i~~~~~~~~~l~l~------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 353 (420)
+.++..+.+++.+.+. ..+...+++..++.|++.+...+...+++.+.+|+++++++.++.+.+..+|. +++|
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~ 163 (417)
T PRK10489 85 ILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGS-VISP 163 (417)
T ss_pred EEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHH-HhHH
Confidence 5555555444443322 22334566778888998888888888999999999999999999999999998 5899
Q ss_pred HHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHH
Q 014716 354 RIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 395 (420)
Q Consensus 354 ~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~ 395 (420)
.++|.+.+..+ |++.|++.++..+++.++.
T Consensus 164 ~l~g~l~~~~~------------~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 164 ALGGLLIAAGG------------VAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHHHHHHh------------hHHHHHHHHHHHHHHHHHH
Confidence 99999998877 9999988777766655443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=128.15 Aligned_cols=170 Identities=14% Similarity=0.084 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHH
Q 014716 207 NFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT 286 (420)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~ 286 (420)
.++..++..++..........+++.+.+++|.+..+.++..+.+.++..++.++.|+++||+ +||..+..+..+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~------g~k~~l~~~~~~ 87 (402)
T TIGR00897 14 NLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEII------GPLKTMMIGLLL 87 (402)
T ss_pred hhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc------CcHHHHHHHHHH
Confidence 44455555555544444455677888889999999999999999999999999999999999 666777777777
Q ss_pred HHHHHHHHH---h--cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHH
Q 014716 287 MSVGHIVVA---S--GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYD 361 (420)
Q Consensus 287 ~~~~~l~l~---~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~ 361 (420)
.+++.+++. . .+...+++..++.|++.+...+...+.+.+.+++++|+++.|+.+.+..+|..+++|.+.+.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~ 167 (402)
T TIGR00897 88 WCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP 167 (402)
T ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 777655432 1 24445667788889888877777778888999999999999999999999864578888888888
Q ss_pred hhcCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 014716 362 NVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 362 ~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
..| |+..+|....+..++.++
T Consensus 168 ~~g------------~~~~~~~~~~~~~~~~~~ 188 (402)
T TIGR00897 168 AFG------------EMNTLWSALAFVLTGGVI 188 (402)
T ss_pred ccc------------hHHHHHHHHHHHHHHHHH
Confidence 776 656655554444444333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=127.17 Aligned_cols=175 Identities=10% Similarity=-0.019 Sum_probs=125.3
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH---cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCCh
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES---LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 276 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r 276 (420)
++.+|++++|...+..++.......+..+.+.+... .+.+....+.+.+...+.....++..|++.||. ++
T Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~------~~ 273 (395)
T PRK10054 200 SVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA------NI 273 (395)
T ss_pred hhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC------Cc
Confidence 456788888887777666555444455566666643 355555667777777777777778888999988 55
Q ss_pred hHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhH
Q 014716 277 PSFIAITLATMSVGHIVVAS--GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 354 (420)
Q Consensus 277 ~~~~~i~~~~~~~~~l~l~~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 354 (420)
+..+..+..+.+++.+.+.. .+...+.+..++.|+|.+...+...+.+.+..|++.+|+.++..+ ...+|. .++|.
T Consensus 274 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~-~~Gp~ 351 (395)
T PRK10054 274 RPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGA-AINPL 351 (395)
T ss_pred hhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHH-HHHHH
Confidence 56666777777776665542 233335566778888888878888889999999999999998765 455787 58999
Q ss_pred HHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 014716 355 IIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 355 l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
++|.++|+.| +...|++.+.+..++.++
T Consensus 352 ~~G~l~~~~g------------~~~~~~~~~~~~~~~~~~ 379 (395)
T PRK10054 352 VSGVILTTLP------------PWSLFVILALAIVAAWLL 379 (395)
T ss_pred HHHHHHHHcC------------hhhHHHHHHHHHHHHHHH
Confidence 9999999987 767777766555555443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=127.76 Aligned_cols=167 Identities=12% Similarity=0.066 Sum_probs=134.2
Q ss_pred CHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHH
Q 014716 205 TLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 284 (420)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~ 284 (420)
+++||.+++..++.......+....+.+.++++.++...++..+.+.+...+..+++|+++||+ +||.++.++.
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~------grr~vl~~~~ 75 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF------PKGRVMFIAN 75 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc------CCchhhHHHH
Confidence 4578888888888776555566666777788888888899999999999999999999999999 6667788887
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhc
Q 014716 285 ATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 364 (420)
Q Consensus 285 ~~~~~~~l~l~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g 364 (420)
++.+++.+.+..... .++.+++.|++.+...+...++++|++|+++|+++.|+.+....+|. ++||.++|.+.+. .
T Consensus 76 ~~~~~~~~~~~~~~~--~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~-~~Gp~lgG~l~~~-~ 151 (393)
T PRK11195 76 GIKLLGCLLMLFGIH--PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAI-LLGTVLGGALADP-H 151 (393)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-H
Confidence 777776665442111 26677889999999999999999999999999999999999999998 6999999999884 3
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHHHH
Q 014716 365 SGEGNSCNGTHCFMLSFLIMASVAFVGCL 393 (420)
Q Consensus 365 ~~~~~~c~g~~~~~~~f~i~~~~~~~~~~ 393 (420)
|+..+.+.+.+.+++.+
T Consensus 152 ------------~~~~~~i~~~~~~~~~~ 168 (393)
T PRK11195 152 ------------AEAALAVCALIYLLAAL 168 (393)
T ss_pred ------------HHHHHHHHHHHHHHHHH
Confidence 66677666655544443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.3e-12 Score=123.70 Aligned_cols=152 Identities=11% Similarity=0.104 Sum_probs=92.8
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHH-HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhH
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 278 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~ 278 (420)
++.++++.++...+...+.......+..+.|.+.+ +.|+++.+.+...+...++..+++++.|++.||+ +||.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~------g~~~ 270 (392)
T PRK10473 197 SESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF------KPRT 270 (392)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CHHH
Confidence 45667777776555554444333445556676665 4599988889999999999999999999999999 5556
Q ss_pred HHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCch-HHHHHHHHHHhhhHHHHhhhHHH
Q 014716 279 FIAITLATMSVGHIVVAS-GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHM-GTIFNTIAIASPVGSYVCSVRII 356 (420)
Q Consensus 279 ~~~i~~~~~~~~~l~l~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~-g~~~g~~~~~~~~g~~~~~~~l~ 356 (420)
.+.++..+..++.+.+.. ...........+.+.+.+..++. ....+..|.+++ |.+.++..+++.+ ++.+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~-----g~~~~ 343 (392)
T PRK10473 271 LMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV--AMSQALGPFSLRAGVASSTLGIAQVC-----GSSLW 343 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCcccccHHHHHHHHHHHH-----HHHHH
Confidence 666676666666655442 22223333344444444433332 233444454333 4555544444444 45566
Q ss_pred HHHHHhhc
Q 014716 357 GYIYDNVA 364 (420)
Q Consensus 357 g~l~~~~g 364 (420)
+.+.+..|
T Consensus 344 ~~l~~~~g 351 (392)
T PRK10473 344 IWLAAVLG 351 (392)
T ss_pred HHHHHHhc
Confidence 67777666
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.2e-12 Score=124.37 Aligned_cols=187 Identities=11% Similarity=0.119 Sum_probs=133.2
Q ss_pred CHHHHHHHHHHHHhcccchhhhccHHHHHH-HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHH
Q 014716 205 TLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAIT 283 (420)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~ 283 (420)
++.+|+.++.+++.+...+......+.+.+ ++|+++.+.+++.++..+...++|+..|++.||+ |.|.++.++
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~------G~R~v~~~~ 106 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF------GGRRWTVFS 106 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CChHHHHHH
Confidence 357777777777777666666666777766 7899999999999999999999999999999999 555566677
Q ss_pred HHHHHHHHHHHHh------cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHH---HhhhH
Q 014716 284 LATMSVGHIVVAS------GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSY---VCSVR 354 (420)
Q Consensus 284 ~~~~~~~~l~l~~------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~---~~~~~ 354 (420)
.++.++..++... ++...+++..++.|++ |..++.....+++.||+++||++.|+....+.+|.. .+.|.
T Consensus 107 ~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 107 TAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred HHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7777777766652 4566788889999997 778888999999999999999999999544444442 23344
Q ss_pred HHH-HHHHhhcCCCCCccc-cccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 355 IIG-YIYDNVASGEGNSCN-GTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 355 l~g-~l~~~~g~~~~~~c~-g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
+.+ .+.+..|.+....-. +...|+.++++...+.+++.++.++.
T Consensus 186 ~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 186 VIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 332 233444321111111 13337777777777777766665554
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-12 Score=123.56 Aligned_cols=151 Identities=17% Similarity=0.156 Sum_probs=129.5
Q ss_pred hhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchh
Q 014716 223 LATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGN 301 (420)
Q Consensus 223 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~ 301 (420)
......+|.+.+++|.|..+.++..+.+.++..++.+..|+++||+ +||.++..+..+.+++.+..+ .++...
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~------G~r~~l~~~~~l~~~~~~~~~~a~~~~~ 99 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV------SERRSVAISLLLIAVGALMRELYPQSAL 99 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh------CchHHHHHHHHHHHHHHHHHHHCcchHH
Confidence 3355678889899999999999999999999999999999999999 777889999999999999887 566777
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHH
Q 014716 302 LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSF 381 (420)
Q Consensus 302 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f 381 (420)
+++.+++.|++.+...+..+.++.+.++ ++|+.+.|+.+.+...|. .+++.+.+.+.++..+ |+..+
T Consensus 100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~-~~g~~~~~~l~~~~~~-----------w~~~~ 166 (393)
T PRK09705 100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGG-GLGAAITPWLVQHSET-----------WYQTL 166 (393)
T ss_pred HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHH-HHHHHHHHHHHHhcCC-----------HHHHH
Confidence 8899999999999999999999999997 789999999998888888 5788888888877533 99888
Q ss_pred HHHHHHHHHHH
Q 014716 382 LIMASVAFVGC 392 (420)
Q Consensus 382 ~i~~~~~~~~~ 392 (420)
.+.++..++..
T Consensus 167 ~~~~~~~~~~~ 177 (393)
T PRK09705 167 AWWALPAVVAL 177 (393)
T ss_pred HHHHHHHHHHH
Confidence 77665554443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.8e-12 Score=127.27 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=125.8
Q ss_pred hhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchhH
Q 014716 224 ATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNL 302 (420)
Q Consensus 224 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~l 302 (420)
.+...++.+.++.|.+..+.++..+.+.++..++.++.|+++||+ +||..+..+.++..++.+.++ ..+...+
T Consensus 37 ~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~------g~r~~l~~~~~~~~~~~~~~~~~~~~~~l 110 (455)
T TIGR00892 37 AVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF------GCRPVVIAGGLLASLGMILASFSSNVIEL 110 (455)
T ss_pred chhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc------CchHHHHhhHHHHHHHHHHHHHhhhHHHH
Confidence 345567888889999999999999999999999999999999999 666677777777777777665 3444445
Q ss_pred HH-HHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHH
Q 014716 303 YV-GSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSF 381 (420)
Q Consensus 303 ~~-~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f 381 (420)
++ ..++.|++.+...++..+++.+.++ ++|+++.|+.+.+..+|. .++|++.+.+.+..| |+++|
T Consensus 111 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~-~~~~~l~~~l~~~~g------------wr~~f 176 (455)
T TIGR00892 111 YLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFL-STLAPLNQYLFESFG------------WRGSF 176 (455)
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHH-HHHHHHHHHHHHHhC------------hHHHH
Confidence 44 3477899888776777788889996 789999999999999998 588999999999887 99999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014716 382 LIMASVAFVGCLVAFLL 398 (420)
Q Consensus 382 ~i~~~~~~~~~~~~~~~ 398 (420)
++.+++++++.+..+++
T Consensus 177 ~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 177 LILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99998887766544433
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-11 Score=120.53 Aligned_cols=171 Identities=13% Similarity=0.129 Sum_probs=125.6
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHH-HH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIG-ES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
+++++++.+|...+..++..+.......+.+.++ ++ .|+++.++++....+.++.++|++++|++.||+ +++
T Consensus 252 ~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~------g~~ 325 (438)
T PRK10133 252 SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF------APH 325 (438)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CHH
Confidence 5778899998877777776666665666777664 54 499999999999999999999999999999999 555
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHH
Q 014716 278 SFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIG 357 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g 357 (420)
..+..+..+.++++++..............+.|++.+..+|...+...+.+|+ +.+++.++..+.. +|+ .++|.+.|
T Consensus 326 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~~~-~g~-~~~~~i~G 402 (438)
T PRK10133 326 KVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVMTI-IGG-GIVTPVMG 402 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHhHHh-ccc-hHHHHHHH
Confidence 55666655555554443322222334567788999999999999999999885 4678888886433 566 46788999
Q ss_pred HHHHhhcCCCCCccccccccHHHHHHHHHHHHH
Q 014716 358 YIYDNVASGEGNSCNGTHCFMLSFLIMASVAFV 390 (420)
Q Consensus 358 ~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~ 390 (420)
.+.|..|+ .+..|++..++.+.
T Consensus 403 ~l~~~~g~-----------~~~~~~v~~~~~~~ 424 (438)
T PRK10133 403 FVSDAAGN-----------IPTAELIPALCFAV 424 (438)
T ss_pred HHHHhccc-----------hHHHHHHHHHHHHH
Confidence 99998763 45777655444433
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.5e-14 Score=134.42 Aligned_cols=178 Identities=14% Similarity=0.164 Sum_probs=147.4
Q ss_pred HHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHH
Q 014716 208 FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATM 287 (420)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~ 287 (420)
..++++...+...--+.+....+...+.++.+++..|++.+.+.+...+..|+.|+++||+ +|++++.++..+.
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry------NR~~v~~vG~~iW 108 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY------NRKRVIAVGIFIW 108 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc------CcceEEeeHHHHH
Confidence 3444555555555555555555666666799999999999999999999999999999999 8888999999999
Q ss_pred HHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCC
Q 014716 288 SVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASG 366 (420)
Q Consensus 288 ~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~ 366 (420)
.++.++.. ....+.+.+++.+.|+|.+.+.++.+++++|.|+..+|++.+++.+.+..+|. .+|-+.++.+.+..+.
T Consensus 109 ~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGs-glG~vvgs~va~~~~~- 186 (493)
T KOG1330|consen 109 TLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGS-GLGYVVGSVVASLTFW- 186 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccccc-ceeEEeeeeeccCccc-
Confidence 99988877 34456788999999999999999999999999999999999999999999999 4776666677666665
Q ss_pred CCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014716 367 EGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTR 403 (420)
Q Consensus 367 ~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~ 403 (420)
||++|++.+++.++..++..++.++.+
T Consensus 187 ----------Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 187 ----------WRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred ----------eEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 999999999999998887766554443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.1e-12 Score=121.57 Aligned_cols=148 Identities=11% Similarity=-0.001 Sum_probs=94.4
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhH
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 278 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~ 278 (420)
++.++++.+|...+..++.......+..+.|.+..+ .|+++.+.+...+...++..+++++.|++.||+ +|+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~------g~~~ 261 (377)
T PRK11102 188 ASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV------GALN 261 (377)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CHHH
Confidence 556778888776666665555555566666766655 599999999999999999999999999999999 4445
Q ss_pred HHHHHHHHHHHH---HHHHHh-c-CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHh-hhHHHHhh
Q 014716 279 FIAITLATMSVG---HIVVAS-G-FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIAS-PVGSYVCS 352 (420)
Q Consensus 279 ~~~i~~~~~~~~---~l~l~~-~-~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~~~~ 352 (420)
.+.++..+..+. .+.... . +.....+...+.+.+.+.........+.|..| +.+|++.++.+... .+|. +.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~-~~g 339 (377)
T PRK11102 262 MLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGA-IVG 339 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHH-HHH
Confidence 555554433322 222211 1 12223333334444445545555566677766 78899999876543 3444 455
Q ss_pred hHH
Q 014716 353 VRI 355 (420)
Q Consensus 353 ~~l 355 (420)
+++
T Consensus 340 ~~~ 342 (377)
T PRK11102 340 ALL 342 (377)
T ss_pred HHH
Confidence 544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-11 Score=120.10 Aligned_cols=174 Identities=10% Similarity=-0.010 Sum_probs=122.3
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcC--CCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLG--YPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
.+.+|++.++...+..++..+......++++.+.++.+ .+...++...+.+..+..+||+++|++.||+ +++
T Consensus 226 ~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~------~~~ 299 (410)
T TIGR00885 226 SRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL------AAH 299 (410)
T ss_pred HHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CHH
Confidence 56788899998888888887777777788888887763 3344445567777788899999999999999 455
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHH
Q 014716 278 SFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIG 357 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g 357 (420)
..+.+..++.++.+++....+........++.|++.+..+|...+...+..+++......++. ++. +|+ .+.|++.|
T Consensus 300 ~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~-~~~-~Gg-a~~p~l~G 376 (410)
T TIGR00885 300 KVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLV-MAI-IGG-GIVPPLQG 376 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-HHH-hcc-chHHHHHH
Confidence 556666666666666555333334466677888999999999999999999866543344443 333 777 47799999
Q ss_pred HHHHhhcCCCCCccccccccHHHHHHHHHHH
Q 014716 358 YIYDNVASGEGNSCNGTHCFMLSFLIMASVA 388 (420)
Q Consensus 358 ~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~ 388 (420)
.+.|..+... ...++.+|++...+.
T Consensus 377 ~~~d~~~~~~------~~~~~~~~~~~~~~~ 401 (410)
T TIGR00885 377 FIIDMKEIAA------APAVNTSFILPLLCF 401 (410)
T ss_pred HHHHHhcccc------cCccchHHHHHHHHH
Confidence 9999652100 001677887654433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=129.27 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=119.8
Q ss_pred hhhccHHHHHHHcCCC--------ccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH
Q 014716 224 ATVNNISQIGESLGYP--------TSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA 295 (420)
Q Consensus 224 ~~~~~~~~~~~~~g~s--------~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~ 295 (420)
.+...++.+..+.+++ ..+.++..+.+.++..++.+++|+++||+ +||..+.++.++..++.++..
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~------grr~~~~~~~~~~~~~~~~~~ 119 (481)
T TIGR00879 46 VIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF------GRKKSLLIIALLFVIGAILMG 119 (481)
T ss_pred hhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh------hhHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666555 78899999999999999999999999999 666778888877777777664
Q ss_pred -hcC---chhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHH---HHHHHhhcCCCC
Q 014716 296 -SGF---PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRII---GYIYDNVASGEG 368 (420)
Q Consensus 296 -~~~---~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~---g~l~~~~g~~~~ 368 (420)
..+ ...+++..++.|++.+...+...+++.|.+|+++|+++.++.+.+..+|. ++++.+. +.+.+..+
T Consensus 120 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~---- 194 (481)
T TIGR00879 120 LAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGI-LVAYGFGSGKVSLNNTLG---- 194 (481)
T ss_pred HhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHH-HHHHHHHHHhhcCCCCcc----
Confidence 222 23678889999999999999999999999999999999999999999999 5777776 33333344
Q ss_pred CccccccccHHHHHHHHHHHHHHHHH
Q 014716 369 NSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 369 ~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
|++.|++.+...++.++.
T Consensus 195 --------w~~~f~~~~~~~~~~~~~ 212 (481)
T TIGR00879 195 --------WRIPLGLQLIPAGLLFLG 212 (481)
T ss_pred --------HHHHHHHHHHHHHHHHHH
Confidence 999999866655555443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.5e-12 Score=126.92 Aligned_cols=176 Identities=11% Similarity=0.076 Sum_probs=131.2
Q ss_pred HhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHH
Q 014716 202 SVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 280 (420)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~ 280 (420)
..+++......+..++.......+...+|.+.++. |.++...|++.+..+++.++|.++.+++.+|+ ++..++
T Consensus 214 v~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~------~~~~lv 287 (524)
T PF05977_consen 214 VRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL------SSRRLV 287 (524)
T ss_pred HhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc------Ccchhh
Confidence 33444444443433333333334556688888765 88999999999999999999999999887777 444556
Q ss_pred HHHHHHHHHHHHHHHh-cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHH
Q 014716 281 AITLATMSVGHIVVAS-GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 359 (420)
Q Consensus 281 ~i~~~~~~~~~l~l~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l 359 (420)
..+.++.+++++.++. .+.+...+..++.|++.....+...+.+.+..|.+.+|+..++.++....+. .+|..+.|.+
T Consensus 288 ~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~-~lGsll~G~l 366 (524)
T PF05977_consen 288 LLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGM-PLGSLLWGFL 366 (524)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 6777777777777663 4445566777888999998888899999999999999999999987776666 5888999999
Q ss_pred HHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHH
Q 014716 360 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAF 396 (420)
Q Consensus 360 ~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~ 396 (420)
.|..| .+.++.+.++..+++.++..
T Consensus 367 a~~~g------------~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 367 ADHFG------------VRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHhC------------HHHHHHHHHHHHHHHHHHHH
Confidence 99988 77788777666655555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.7e-12 Score=127.46 Aligned_cols=175 Identities=18% Similarity=0.165 Sum_probs=131.9
Q ss_pred hCHHHHHHHHHHHHhcc----cchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 204 CTLNFWLLFVAMLCGMG----SGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 204 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
++++++..+....+... ........++++.+++|-+ ....|+.+...++..++.++.|.+||.+ |||++
T Consensus 38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf------GRr~~ 110 (599)
T PF06609_consen 38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF------GRRYF 110 (599)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh------cchHH
Confidence 45566655544433322 2222344567888888754 6778888899999999999999999999 88899
Q ss_pred HHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHH
Q 014716 280 IAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGY 358 (420)
Q Consensus 280 ~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~ 358 (420)
++++.++..++++..+ .++...++.+..+.|+|.|... .....++|..|.|.|+...++......+.. ..++.++..
T Consensus 111 ~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~-~~~~~ia~~ 188 (599)
T PF06609_consen 111 FIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITT-WISPLIAQL 188 (599)
T ss_pred HHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhh-cccHHHHHH
Confidence 9999999999999988 6677889999999999987765 456678999999999988877766554444 356666655
Q ss_pred HHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 359 IYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 359 l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
+..+.+ |||.|++..+...+++++..++.
T Consensus 189 ~~~~~~------------WRw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 189 FAAHSG------------WRWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred hccCCC------------cchHHHHHHHHHHHHHHHHHHHh
Confidence 544333 99999999998888876655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.7e-12 Score=122.99 Aligned_cols=165 Identities=13% Similarity=0.066 Sum_probs=127.9
Q ss_pred hCHHHHHHHHHHHHhcccchhhhccHHHHH-HHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHH
Q 014716 204 CTLNFWLLFVAMLCGMGSGLATVNNISQIG-ESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAI 282 (420)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i 282 (420)
.++.++.+++..++...........+|.+. +++|.|..+.++..+.+.+...+++++.|+++||+ +||+.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~------g~r~~l~~ 86 (392)
T PRK12382 13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY------GAKRSALQ 86 (392)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh------cchHHHHH
Confidence 445667776666666655555666777655 57799999999999999999999999999999999 56666776
Q ss_pred HHHHHHHHHHHH---Hh------cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhh
Q 014716 283 TLATMSVGHIVV---AS------GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 353 (420)
Q Consensus 283 ~~~~~~~~~l~l---~~------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 353 (420)
+.+...++.+.. .. .+...+++.+++.|++.+...+...+++.|.+|+++|+++.|+...+...|. +++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~-~~g~ 165 (392)
T PRK12382 87 GMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGAL-AAGA 165 (392)
T ss_pred HHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHH-HHHH
Confidence 666555443321 11 1234577888999999998888888899999999999999999999888888 5889
Q ss_pred HHHHHHHHhhcCCCCCccccccccHHHHHHHHHH
Q 014716 354 RIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASV 387 (420)
Q Consensus 354 ~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~ 387 (420)
++.+.+.+..| |+..+.+..+.
T Consensus 166 ~~~~~l~~~~g------------~~~~~~~~~~~ 187 (392)
T PRK12382 166 PLGLLLHSHFG------------FAALALTTMVL 187 (392)
T ss_pred HHHHHHHhccC------------hHHHHHHHHHH
Confidence 99999988777 88766654443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-12 Score=126.80 Aligned_cols=148 Identities=18% Similarity=0.100 Sum_probs=113.3
Q ss_pred CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHhc----------C---chhHH
Q 014716 237 GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASG----------F---PGNLY 303 (420)
Q Consensus 237 g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~~----------~---~~~l~ 303 (420)
|.+..+.++..+.+.++..++.+++|+++||+ +||..+.++..++.++.+..+.. + ...++
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~------Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF------GRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFV 124 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHH
Confidence 77788899999999999999999999999999 77777888888877776654421 1 23467
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHH
Q 014716 304 VGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLI 383 (420)
Q Consensus 304 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i 383 (420)
+.+++.|++.|...+...++++|.+|+++||++.++.+.+..+|. ++++.+.+.+...... ... +...||+.|++
T Consensus 125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~---~~~-~~~gWr~~f~~ 199 (479)
T PRK10077 125 IYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQ-LVVYFVNYFIARSGDA---SWL-NTDGWRYMFAS 199 (479)
T ss_pred HHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHH-HHHHHHHHHHhccCcc---ccc-ccCChHHHHHH
Confidence 889999999999999999999999999999999999999999998 4666555444321110 000 11239999998
Q ss_pred HHHHHHHHHHHH
Q 014716 384 MASVAFVGCLVA 395 (420)
Q Consensus 384 ~~~~~~~~~~~~ 395 (420)
.++..++..+..
T Consensus 200 ~~~~~~~~~~~~ 211 (479)
T PRK10077 200 EAIPALLFLMLL 211 (479)
T ss_pred HHHHHHHHHHHH
Confidence 877776655443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-12 Score=128.72 Aligned_cols=158 Identities=11% Similarity=0.045 Sum_probs=123.9
Q ss_pred hhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH------hc
Q 014716 224 ATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA------SG 297 (420)
Q Consensus 224 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~------~~ 297 (420)
.+....|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ +||+++.++.++.++..+.+. ..
T Consensus 47 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~------g~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 120 (467)
T PRK09556 47 NFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK------NTKQFLPFLLILSAICMLGFGASLGSGSV 120 (467)
T ss_pred ChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc------CccchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345567888899999999999999999999999999999999999 566667666666665554433 24
Q ss_pred CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCcccccccc
Q 014716 298 FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCF 377 (420)
Q Consensus 298 ~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~ 377 (420)
+...+++.+++.|++.+..++....++++.+|+++||++.|+.+.+..+|. ++++.+...+.+.... .+|
T Consensus 121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~-~l~~~i~~~~~~~~~~---------~~~ 190 (467)
T PRK09556 121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGG-AGAGGVALWGANYFFD---------GHV 190 (467)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhh-hHHHHHHHHHHHhhcc---------Ccc
Confidence 556678889999999999999999999999999999999999999999998 4777777766654310 018
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014716 378 MLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 378 ~~~f~i~~~~~~~~~~~~~~ 397 (420)
+..|.+.+++.++..++.++
T Consensus 191 ~~~f~~~g~~~~~~~i~~~~ 210 (467)
T PRK09556 191 IGMFIFPSIIALIIGFIGLR 210 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 88888777766655444433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-10 Score=110.74 Aligned_cols=186 Identities=17% Similarity=0.120 Sum_probs=136.2
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcC-CCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLG-YPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
..+++|+|++...++..++.......+.+..+.|+++.| ++....+...++..++-++.-...+++..|+ +-+
T Consensus 200 ~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~------g~~ 273 (400)
T PF03825_consen 200 ALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF------GIK 273 (400)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc------CHH
Confidence 368999999998888888887777778888899999997 7777777777777777777777777777777 666
Q ss_pred HHHHHHHHHHHHHHHHHH-h-cCchhHHHH----HHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHH-HHhhhHHHH
Q 014716 278 SFIAITLATMSVGHIVVA-S-GFPGNLYVG----SIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIA-IASPVGSYV 350 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~-~-~~~~~l~~~----~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~~ 350 (420)
+++.++.+..++=..+++ . .+....... ..+.|+.+|..+.....++.+..|++.++++.++.+ +...+|. .
T Consensus 274 ~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~-~ 352 (400)
T PF03825_consen 274 WLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGG-A 352 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHH-H
Confidence 778888877777655555 3 233332222 245899999999999999999999999999999985 5678888 5
Q ss_pred hhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 014716 351 CSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 351 ~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
+|..++|+++|+.|.+. .--|...|.+.+++.++..++.++
T Consensus 353 iG~~igG~l~~~~g~~~------~~~~~~~~~v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 353 IGSLIGGWLYDAFGARG------MFDWSAVFLVFAVMALVILVLFVI 393 (400)
T ss_pred HHHHHHHHHHHHhcchh------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999987311 111334455555555554444333
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=120.13 Aligned_cols=151 Identities=12% Similarity=0.066 Sum_probs=129.7
Q ss_pred CHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHH
Q 014716 205 TLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 284 (420)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~ 284 (420)
++++|.+++..++...........+|.+.+++|.|..++++..+.+.+++.+++++.|+++||+ +||..+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~------g~k~~~~~~~ 78 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI------GFNRSYYLAS 78 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHHH
Confidence 4568888888888777767788889999999999999999999999999999999999999999 6667777888
Q ss_pred HHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHh
Q 014716 285 ATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN 362 (420)
Q Consensus 285 ~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~ 362 (420)
++.+++.+... .++...+++..++.|++.+..++...+.+.+..++++|+++.|..+.+..+|. .++|.+.+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~l~~~ 156 (381)
T PRK03633 79 LIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGT-VLGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccc
Confidence 88887777665 55666788889999999998888888888888998999999999999999998 5888888887664
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=121.57 Aligned_cols=167 Identities=13% Similarity=0.086 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHH-HHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIG-ESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 284 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~ 284 (420)
+++..+.+..++...........+|.+. ++.|.|..+.++..+...++..++.++.|+++||+ +||.++.++.
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~------g~r~~l~~~~ 88 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL------GPKKAVVFGL 88 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc------CCcchHHHHH
Confidence 4555566666666555555666777755 56799999999999999999999999999999999 6666677777
Q ss_pred HHHHHHHHHHH----hc-----CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHH
Q 014716 285 ATMSVGHIVVA----SG-----FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRI 355 (420)
Q Consensus 285 ~~~~~~~l~l~----~~-----~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l 355 (420)
++.+++.+.+. .. +...+++.+++.|++.+...+...+++.|.+++++|+++.++...+..+|. ++++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~l 167 (399)
T PRK05122 89 CGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGAL-AIGAPL 167 (399)
T ss_pred HHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHH-HHHHHH
Confidence 66665544332 11 122467788899999999988888999999999999999999988888887 588999
Q ss_pred HHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHH
Q 014716 356 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVG 391 (420)
Q Consensus 356 ~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~ 391 (420)
++.+.+..+ |+..+++..+++++.
T Consensus 168 ~~~l~~~~g------------~~~~~~~~~~~~~~~ 191 (399)
T PRK05122 168 GVLLYHWGG------------LAGLGLLIMLLALLG 191 (399)
T ss_pred HHHHHHccc------------HHHHHHHHHHHHHHH
Confidence 999988777 888887766554443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-10 Score=116.21 Aligned_cols=156 Identities=12% Similarity=0.040 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcC---------chhHHHHHHHHHHh
Q 014716 243 INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGF---------PGNLYVGSIIVGVC 312 (420)
Q Consensus 243 ~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~---------~~~l~~~~~l~G~~ 312 (420)
.+++.++.++...+..++.+++-+|.++|. +....+.+++++.+++++.+. ... ..++....++.|+|
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~--~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~g 395 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRL--PMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIG 395 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCC--CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHH
Confidence 566777788777788788777777776554 455667788888888877654 111 23577888899999
Q ss_pred hhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCcccc-ccccHHHHHHHHHHHHHH
Q 014716 313 YGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNG-THCFMLSFLIMASVAFVG 391 (420)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g-~~~~~~~f~i~~~~~~~~ 391 (420)
.+...+...+++.+..|++.||..+|+..++..+|+. ++..+.+....... ...... ...|.+.|...++++++.
T Consensus 396 e~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~-~~g~~~~~~~~~~~---~~~~~~~~~~~~~~f~~~~~~~~~~ 471 (500)
T PRK09584 396 ELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAAL-IAGYVANLMAVPDN---VTDPLMSLEVYGRVFLQIGIATAVI 471 (500)
T ss_pred HHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccc---cccchhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888888874 54444443221000 000000 112678888888777665
Q ss_pred HHHHHHHHHHhHH
Q 014716 392 CLVAFLLFIRTRR 404 (420)
Q Consensus 392 ~~~~~~~~~~~~~ 404 (420)
.++.+++.++.+|
T Consensus 472 a~~~~~~~~~~~k 484 (500)
T PRK09584 472 AVLMLLTAPKLNR 484 (500)
T ss_pred HHHHHHHHHHHHH
Confidence 5554444444433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-10 Score=114.37 Aligned_cols=172 Identities=14% Similarity=-0.065 Sum_probs=107.2
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
.++.+|++.+|...+..++.......+....|+++++. |+++.+.++.......+..++..+.+.+.++.. +++
T Consensus 211 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~-----~~~ 285 (413)
T PRK15403 211 FRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPT-----EPR 285 (413)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----chh
Confidence 36778999999988877777666666777889898877 899999998887777777777776666543321 222
Q ss_pred HHHHHHHHHHHHHHHHHH-----hcC-chhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHh
Q 014716 278 SFIAITLATMSVGHIVVA-----SGF-PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVC 351 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~-----~~~-~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 351 (420)
... ....+..++.+++. ..+ ....++..+++++|.+...+.......... ...+|++.++.+.....+. ..
T Consensus 286 ~~~-~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~-~~~~G~a~a~~~~~~~~~~-~~ 362 (413)
T PRK15403 286 FIW-RAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSN-NLPKGTVSASLNMVILMVM-AV 362 (413)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhccC-CCCCcHHHHHHHHHHHHHH-HH
Confidence 211 11112222221111 122 222456777788888887766664332211 2247999998887777776 46
Q ss_pred hhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHH
Q 014716 352 SVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVG 391 (420)
Q Consensus 352 ~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~ 391 (420)
++.+.|++.+... ...|...++++.+.
T Consensus 363 ~~~~~g~~~~~~~-------------~~~~~~~~~~~~~~ 389 (413)
T PRK15403 363 SVEIGRWLWFNGG-------------RLPFHLLAVVAGVI 389 (413)
T ss_pred HHHHHHHHHHcCC-------------chHHHHHHHHHHHH
Confidence 7778888876532 35666555555443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=122.14 Aligned_cols=177 Identities=12% Similarity=0.104 Sum_probs=118.7
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhH
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 278 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~ 278 (420)
.+.++++++|.+++..++...+...+...+|.++++ +|+++.+.++..+...++..+++++.|+++||+ +||.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~------g~r~ 77 (420)
T PRK09528 4 MYYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL------GLKK 77 (420)
T ss_pred chhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CchH
Confidence 345678899999888888877666677888888876 699999999999999999999999999999999 4555
Q ss_pred HHHHHHHHHHHHHHHH---HhcCc-h-hHHH----HHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHH
Q 014716 279 FIAITLATMSVGHIVV---ASGFP-G-NLYV----GSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSY 349 (420)
Q Consensus 279 ~~~i~~~~~~~~~l~l---~~~~~-~-~l~~----~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 349 (420)
.+.++..+.+++...+ ..... . .... ..+..|.+.....+....+..+ +. +++|..+|.......+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~g~~~g~~~~~~~~g~- 154 (420)
T PRK09528 78 HLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-VS-RRSGFEYGRARMWGSLGW- 154 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-HH-hhccccchhhHHhhhHHH-
Confidence 5555444333322211 11100 0 1111 2222333333333333333322 22 456788888888888998
Q ss_pred HhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 350 VCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 350 ~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
.++|++.|.+.+. + |+..|++.++++++++++.+..
T Consensus 155 ~i~~~~~g~l~~~-~------------~~~~f~~~~~~~~~~~~~~~~~ 190 (420)
T PRK09528 155 ALCAFIAGILFNI-N------------PQINFWLGSGSALILLVLLFFA 190 (420)
T ss_pred HHHHHHHHHHHhc-C------------chHhHHHHHHHHHHHHHHHhcc
Confidence 5889999998874 4 8899988887777766554433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=118.79 Aligned_cols=142 Identities=16% Similarity=0.149 Sum_probs=103.5
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
.++.++++++|...+..++.......+..+.|.+.++. |+++.+++.+.++..+...++++++|+++||+++|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~------ 291 (366)
T TIGR00886 218 QLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA------ 291 (366)
T ss_pred HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccc------
Confidence 36678888999888887777766677788889888765 99999999999999999999999999999999543
Q ss_pred HHHHHHHHHHHHHHHHHH--hc---CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhH
Q 014716 278 SFIAITLATMSVGHIVVA--SG---FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVG 347 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~--~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 347 (420)
..+..+....+.+..++. .. +.........+.+++.|...+...+++++.+| +++|+.+|+.+....+|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 292 RKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 223333333333333322 22 22233444555566667777777888888887 69999999998877665
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.9e-11 Score=118.96 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=118.7
Q ss_pred HHHHHHHHHHhcccchhhhccHHHHHHHcCCCccc-hhH-----HHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHH
Q 014716 208 FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSA-INS-----LVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIA 281 (420)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~~~-----~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~ 281 (420)
++..++..++-..-...+....|.+.++...+.+. ..+ ..+...++..+|.++.|+++||+ |||..+.
T Consensus 18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~------Grr~~l~ 91 (490)
T PRK10642 18 ITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY------GRQKILA 91 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccHHHHH
Confidence 33444455544443344555667776666433222 122 13566678899999999999999 7778899
Q ss_pred HHHHHHHHHHHHHH-hcCch--------hHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhh
Q 014716 282 ITLATMSVGHIVVA-SGFPG--------NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCS 352 (420)
Q Consensus 282 i~~~~~~~~~l~l~-~~~~~--------~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~ 352 (420)
++.++++++.++.+ .++.. .+.+.+++.|++.|+.++...++++|.+|+++||...++...+..+|. +++
T Consensus 92 ~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~-~lg 170 (490)
T PRK10642 92 ITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGF-VLG 170 (490)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH-HHH
Confidence 99999999988877 34433 267889999999999999999999999999999999999988877777 466
Q ss_pred hHHHHHHHH--------hhcCCCCCccccccccHHHHHHHHHHHHHHH
Q 014716 353 VRIIGYIYD--------NVASGEGNSCNGTHCFMLSFLIMASVAFVGC 392 (420)
Q Consensus 353 ~~l~g~l~~--------~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~ 392 (420)
+.+...+.. ..| ||+.|++.+...+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~g------------WR~~f~i~~~~~l~~~ 206 (490)
T PRK10642 171 AGVVVLISTIVGEANFLDWG------------WRIPFFIALPLGIIGL 206 (490)
T ss_pred HHHHHHHHHhcCHHHhcCcc------------HHHHHHHHHHHHHHHH
Confidence 555444332 234 9999998765554433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.4e-12 Score=126.07 Aligned_cols=144 Identities=15% Similarity=0.145 Sum_probs=121.3
Q ss_pred HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH---hcCchhHHHHHHHHHH
Q 014716 235 SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA---SGFPGNLYVGSIIVGV 311 (420)
Q Consensus 235 ~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~---~~~~~~l~~~~~l~G~ 311 (420)
+.+++..+.+++.+.+.++..++.+++|+++||+ +||+.+.++.++.+++.++.. ..+...+++..++.|+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~------g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~ 143 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY------VFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGL 143 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh------CcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 5678888999999999999999999999999999 566677777777777665542 2334567888999999
Q ss_pred hhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhh-cCCCCCccccccccHHHHHHHHHHHHH
Q 014716 312 CYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV-ASGEGNSCNGTHCFMLSFLIMASVAFV 390 (420)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~-g~~~~~~c~g~~~~~~~f~i~~~~~~~ 390 (420)
+.+..++....+++|.+|+++|+++.|+.+.+..+|. ++++++.+.+.+.. + |+..|++.+++.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~i~~~l~~~l~~~~~g------------w~~~f~i~~~~~~~ 210 (465)
T TIGR00894 144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGT-FIFLPISGWLCESWGG------------WPMIFYVFGIVGCA 210 (465)
T ss_pred hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCC------------CCeehhhhhHHHHH
Confidence 9999999999999999999999999999999999999 58899999998874 6 99999998887766
Q ss_pred HHHHHHH
Q 014716 391 GCLVAFL 397 (420)
Q Consensus 391 ~~~~~~~ 397 (420)
..++.+.
T Consensus 211 ~~~~~~~ 217 (465)
T TIGR00894 211 WSLLWFV 217 (465)
T ss_pred HHHHHHH
Confidence 6554433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-10 Score=108.33 Aligned_cols=174 Identities=16% Similarity=0.174 Sum_probs=131.5
Q ss_pred cHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCCh
Q 014716 198 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 276 (420)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r 276 (420)
...+++++++++...+..|+..+...+.-.+++.|+.+ .|.+..+++.+++.+..+.++||.++-++..|+. ++
T Consensus 228 ~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~-----~~ 302 (422)
T COG0738 228 GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIK-----PE 302 (422)
T ss_pred hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----HH
Confidence 45789999999999999999999999999999999998 5999999999999999999999999888888883 33
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHH
Q 014716 277 PSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRII 356 (420)
Q Consensus 277 ~~~~~i~~~~~~~~~l~l~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~ 356 (420)
..+....++..+-++.....+...-....++.|+.++..+|...+...+..| ++-..+.++..++. +|+. +-|++.
T Consensus 303 -k~Laf~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~mai-vGGA-iiP~l~ 378 (422)
T COG0738 303 -KYLAFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVMAI-VGGA-IIPPLQ 378 (422)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeeehe-ecch-HHHHHH
Confidence 3344444444443333333333445566778899999999999999999999 55556666655554 4443 459999
Q ss_pred HHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHH
Q 014716 357 GYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGC 392 (420)
Q Consensus 357 g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~ 392 (420)
|++.|+.| -...+.....+|.+-.
T Consensus 379 G~i~d~~g------------~~~~~~~~pllc~lyV 402 (422)
T COG0738 379 GVIADMFG------------IQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHHhhh------------hHHHHHHHHHHHHHHH
Confidence 99999988 4455554444554443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.2e-11 Score=115.60 Aligned_cols=181 Identities=11% Similarity=0.024 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHH
Q 014716 207 NFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT 286 (420)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~ 286 (420)
.++.+...+++...........+|.+.++.|.+..+.++..+...++..++.+..|++.||+ +||+.+.++..+
T Consensus 4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~------G~r~~~~~g~~l 77 (410)
T TIGR00885 4 PFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL------SYKAGILLGLFL 77 (410)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CchHHHHHHHHH
Confidence 34555555554444434445677888888899999999999999999999999999999999 777888999999
Q ss_pred HHHHHHHHH----hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHh
Q 014716 287 MSVGHIVVA----SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN 362 (420)
Q Consensus 287 ~~~~~l~l~----~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~ 362 (420)
.+++.+++. ..+...+.+..++.|+|.|...+..++++.+..|++++++..++.+....+|. .++|.+.+.+...
T Consensus 78 ~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~-~~g~~i~~~l~~~ 156 (410)
T TIGR00885 78 YALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGS-IIGMVVAQQLILS 156 (410)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 888887753 13455677888999999999999999999999999999999999999999998 5888888877533
Q ss_pred hcCCC-CCcc-------------ccccccHHHHHHHHHHHHHHHHH
Q 014716 363 VASGE-GNSC-------------NGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 363 ~g~~~-~~~c-------------~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
..... .... .....|+++|++.+++.++..++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 157 NLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred CCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21000 0000 01123899998888776665443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.6e-09 Score=106.29 Aligned_cols=178 Identities=11% Similarity=0.004 Sum_probs=120.2
Q ss_pred HHHHHHHHHHhcccchhhhccHHHHHHHc-CCCcc----chhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH--H
Q 014716 208 FWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTS----AINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF--I 280 (420)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~----~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~--~ 280 (420)
+..+++...+.+....-..+.++.+.++. +.+.. ..+++.++.++.-++..++..++-.|..||.. +.+.. +
T Consensus 274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~-~~~~~~k~ 352 (475)
T TIGR00924 274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGK-DPTTPLKF 352 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCC-CCCcHHHH
Confidence 33344444444433333444556655543 33221 26678888888888887776665556554422 22222 4
Q ss_pred HHHHHHHHHHHHHHH----------hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHH
Q 014716 281 AITLATMSVGHIVVA----------SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYV 350 (420)
Q Consensus 281 ~i~~~~~~~~~l~l~----------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 350 (420)
.++.++.++++..+. ..+.+++....++.++|.....+...+++.+..|++.||+.+|+..+...+|..
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~- 431 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSL- 431 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-
Confidence 677777777766554 234566788899999999999999999999999999999999999999999994
Q ss_pred hhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 351 CSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 351 ~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
+++.+.....+..+ |...|...++++++..++.+.+.
T Consensus 432 l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 432 LGGYLATFGAVPQG------------VTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred HHHHHHHHHhcccc------------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666555 77777777777666655544433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-11 Score=118.45 Aligned_cols=170 Identities=14% Similarity=0.124 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHH
Q 014716 205 TLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAIT 283 (420)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~ 283 (420)
||++|.+....++.+.....+...+|.++++ +|++..+.++..+...+...+++++.|+++||+ +||..+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~------grr~~~~~~ 74 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL------GLKKHLLWI 74 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CcHHHHHHH
Confidence 5789999888888877777777788888765 599999999999999999999999999999999 555555544
Q ss_pred HHHHHHHHHH---HHhcC------chhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhH
Q 014716 284 LATMSVGHIV---VASGF------PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 354 (420)
Q Consensus 284 ~~~~~~~~l~---l~~~~------~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 354 (420)
....+++... +.... .....+..++.|++.+...+....+..+.-+ +++..+|.......+|. +++|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~-~~g~~ 151 (396)
T TIGR00882 75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGW-ALCAS 151 (396)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHH-HHHHH
Confidence 4443333221 11111 1123344566777777777777777766433 34556777777778888 57888
Q ss_pred HHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHH
Q 014716 355 IIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAF 396 (420)
Q Consensus 355 l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~ 396 (420)
++|.+.+ .+ |+..|++.+++.++..++.+
T Consensus 152 ~~g~l~~-~~------------~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 152 IAGILFS-ID------------PQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred HHhhhhc-cC------------chHHHHHHHHHHHHHHHHHH
Confidence 8888765 34 89999988888777665543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.3e-11 Score=115.57 Aligned_cols=165 Identities=12% Similarity=0.004 Sum_probs=120.2
Q ss_pred HHhcccchhhhccHHHHH-HHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHH
Q 014716 216 LCGMGSGLATVNNISQIG-ESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVV 294 (420)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l 294 (420)
++...+.......+|.++ ++.|.+..+.++..+...+...+..++.|+++||+|| ||.++..+..+..++.++.
T Consensus 7 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~-----r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 7 FLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGD-----RKGLILFCCLLAALACLLF 81 (375)
T ss_pred HHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----chHHHHHHHHHHHHHHHHH
Confidence 333333344556667665 4669999999999999999999999999999999953 2334444555555555554
Q ss_pred H-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHH--HHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCcc
Q 014716 295 A-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTI--FNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSC 371 (420)
Q Consensus 295 ~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c 371 (420)
. .++...+++..++.|.+.+...+...++..|..+++.|+.. .+....+..+|. +++|.+.+.+.+..+
T Consensus 82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~ig~~~~~~l~~~~~------- 153 (375)
T TIGR00899 82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAW-VIGPPLAFWLALGFG------- 153 (375)
T ss_pred HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHH-HHhhhHHHHHHHhcc-------
Confidence 4 34455566666777777777777777888888887776644 577778888888 588999999988877
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 372 NGTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 372 ~g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
|++.|++.+.++++..++.+..
T Consensus 154 -----~~~~f~~~~~~~~~~~~~~~~~ 175 (375)
T TIGR00899 154 -----FTVMFLTAALAFVLCGVLVWLF 175 (375)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988777766655443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=100.43 Aligned_cols=132 Identities=12% Similarity=0.188 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHH
Q 014716 247 VSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITY 325 (420)
Q Consensus 247 ~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~ 325 (420)
.+...++..++.++.|++.||+ +||..+..+..+..++.+.+. ..+...+.+..++.|++.+...+..++++.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRF------GRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIA 77 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhc------chhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3456778889999999999999 566667777777777766655 445556777788899999999999999999
Q ss_pred HhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 014716 326 EIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 326 ~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
|.+|+++|++..++.+....+|. .+++.+.+.+.+..+ |++.|++.+.+++++.+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALGP-LLGPPLGGVLAQFLG------------WRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHHH-HHhHHhHHHHhcccc------------hHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999 588999999988766 889999888777776655443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.8e-10 Score=107.19 Aligned_cols=182 Identities=14% Similarity=0.160 Sum_probs=144.2
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc----CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCC
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL----GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW 274 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~ 274 (420)
..+++|++++|.+.+........+..+....+.|.+.+ +.+....|.+.++-.+..++.-.++.++.+|+
T Consensus 213 ~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri------ 286 (412)
T PF01306_consen 213 VLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI------ 286 (412)
T ss_dssp HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 47889999999987777666666666666677777654 33345567777888888888888889999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHH-HHHhhhHHHHhh
Q 014716 275 ERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTI-AIASPVGSYVCS 352 (420)
Q Consensus 275 ~r~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~~~~ 352 (420)
+.|..+.++..++++=.++++ .+++..+.+.-.+-|+-.+.......-++.+.+|+|..++.+.+. +.+..+|.. +-
T Consensus 287 g~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~-i~ 365 (412)
T PF01306_consen 287 GAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGII-IL 365 (412)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHH-HH
T ss_pred ChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH-HH
Confidence 555678888888888777777 567777888888999999999889999999999999999999996 788899985 55
Q ss_pred hHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 353 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 353 ~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
+.++|.++|+.| ++.+|++++++.+...+++.+..
T Consensus 366 s~~~G~lyd~~G------------~~~tylimg~iv~~~~li~~f~l 400 (412)
T PF01306_consen 366 SPLAGYLYDRIG------------FQHTYLIMGLIVLPFTLISAFTL 400 (412)
T ss_dssp HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhHHhhHhhcC------------cHHHHHHHHHHHHHHHHHheeee
Confidence 689999999999 99999999988777776665543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-09 Score=106.79 Aligned_cols=160 Identities=14% Similarity=0.159 Sum_probs=130.0
Q ss_pred cHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCCh
Q 014716 198 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 276 (420)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r 276 (420)
..++.++|+.++.+++..++............+++.++. |.+ ...+.+.....+...++.+++++++||++||
T Consensus 217 ~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~----- 290 (428)
T PF13347_consen 217 SLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKK----- 290 (428)
T ss_pred chhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccce-----
Confidence 457888999999999888888777777777788888876 555 5677778888999999999999999999544
Q ss_pred hHHHHHHHHHHHHHHHHHH-h--cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhC-------CCchHHHHHHHHHHhhh
Q 014716 277 PSFIAITLATMSVGHIVVA-S--GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFG-------VGHMGTIFNTIAIASPV 346 (420)
Q Consensus 277 ~~~~~i~~~~~~~~~l~l~-~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~ 346 (420)
..+..+..+.+++.+++. . .+...+++..++.|++.+..+...+++.+|..+ ++..|..+|+.+....+
T Consensus 291 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~ 369 (428)
T PF13347_consen 291 -KVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI 369 (428)
T ss_pred -eehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH
Confidence 457777777777766654 2 466778888999999999999999999998775 45579999999999999
Q ss_pred HHHHhhhHHHHHHHHhhcC
Q 014716 347 GSYVCSVRIIGYIYDNVAS 365 (420)
Q Consensus 347 g~~~~~~~l~g~l~~~~g~ 365 (420)
+.. +++.+.|.+.+..|-
T Consensus 370 ~~~-la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 370 GQG-LAGAIVGLLLALVGY 387 (428)
T ss_pred HHH-HHHHHHHHHHHHhCc
Confidence 994 788899999887763
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-10 Score=114.18 Aligned_cols=150 Identities=15% Similarity=0.138 Sum_probs=109.3
Q ss_pred hhhhccHHHHHHHcC---CCccchh---HHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHh
Q 014716 223 LATVNNISQIGESLG---YPTSAIN---SLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVAS 296 (420)
Q Consensus 223 ~~~~~~~~~~~~~~g---~s~~~~~---~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~ 296 (420)
..+....|.+.++.+ .+..+.+ ...+...++..+|.+++|+++||+ |||+.+.++.++.+++.++.+.
T Consensus 39 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~------Grr~~l~~~~~~~~~~~~~~~~ 112 (432)
T PRK10406 39 YVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH------GRKKSMLISVCMMCFGSLVIAC 112 (432)
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CcHHHHHHHHHHHHHHHHHHhh
Confidence 334555666767764 3333322 233444455569999999999999 7778899999999888887763
Q ss_pred -cCc--------hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHH------
Q 014716 297 -GFP--------GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYD------ 361 (420)
Q Consensus 297 -~~~--------~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~------ 361 (420)
++. ..+.+.+++.|++.|..++...++++|.+|+++||...++.+.+...|. +.++.+...+..
T Consensus 113 ~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~ 191 (432)
T PRK10406 113 LPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQ-LLALLVVVVLQQTLEDAE 191 (432)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHH
Confidence 333 2477889999999999999999999999999999999999887777776 455554443332
Q ss_pred --hhcCCCCCccccccccHHHHHHHHHHHHHH
Q 014716 362 --NVASGEGNSCNGTHCFMLSFLIMASVAFVG 391 (420)
Q Consensus 362 --~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~ 391 (420)
..| ||..|++.++..++.
T Consensus 192 ~~~~g------------Wr~~F~i~~~~~ll~ 211 (432)
T PRK10406 192 LREWG------------WRIPFALGAVLAVVA 211 (432)
T ss_pred Hhccc------------hHHHHHHHHHHHHHH
Confidence 234 999998876665544
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-11 Score=108.44 Aligned_cols=154 Identities=15% Similarity=0.077 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHH
Q 014716 205 TLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAIT 283 (420)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~ 283 (420)
.+.||++.+..++...+.+.++..-|.+.++. |+|+..++.+.+..-..+.+..++.|.++||+|++ .+++..+
T Consensus 263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n-----~~wv~~a 337 (459)
T KOG4686|consen 263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN-----LWWVASA 337 (459)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcce-----ehhHHHH
Confidence 36899999999999888888888888777766 99999999999998888999999999999999643 2455556
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhh
Q 014716 284 LATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV 363 (420)
Q Consensus 284 ~~~~~~~~l~l~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~ 363 (420)
.+...+++..+.++ ...-+..+.+.|+.+.......+..++.+.|.++.|+++|+++...++|-. +.|+++|.+.|..
T Consensus 338 ~~~tl~~H~~l~Ft-~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla-~i~Iiag~i~d~~ 415 (459)
T KOG4686|consen 338 CILTLLGHSGLFFT-FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLA-FIPIIAGFIADGD 415 (459)
T ss_pred HHHHHHHhhhHHhh-hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhh-HHhhhhheeecCC
Confidence 66666777665532 233466777889888877777888889999999999999999999999984 7799999999987
Q ss_pred cC
Q 014716 364 AS 365 (420)
Q Consensus 364 g~ 365 (420)
|+
T Consensus 416 g~ 417 (459)
T KOG4686|consen 416 GS 417 (459)
T ss_pred Cc
Confidence 75
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8e-10 Score=108.34 Aligned_cols=156 Identities=12% Similarity=0.017 Sum_probs=105.7
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
.++.++++.+|...+..++.......+....+.+.++ .|++..+.++......++..++.++.+++.||++ +.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~------~~ 273 (394)
T PRK11652 200 YRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFS------TL 273 (394)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 3566778888766655554443334445556667776 5999888888888888888888888888888874 22
Q ss_pred HHHH-HHHHHHHHHHHHHHh---cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhh
Q 014716 278 SFIA-ITLATMSVGHIVVAS---GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 353 (420)
Q Consensus 278 ~~~~-i~~~~~~~~~l~l~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 353 (420)
.... ....+..+....... .+...+....++.|++.+...+...+...|.+| +++|+..++.+....+|. .+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~-~~~~ 351 (394)
T PRK11652 274 MWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGS-GLAA 351 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHH-HHHH
Confidence 2222 222222222222221 223345666778888889888999999999887 678999999999989998 4788
Q ss_pred HHHHHHHHh
Q 014716 354 RIIGYIYDN 362 (420)
Q Consensus 354 ~l~g~l~~~ 362 (420)
.+.|.+.+.
T Consensus 352 ~~~~~~~~~ 360 (394)
T PRK11652 352 LLSAMLPQT 360 (394)
T ss_pred HHHHHccCC
Confidence 888877543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-10 Score=111.15 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=121.0
Q ss_pred hhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHhcCchhH
Q 014716 223 LATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNL 302 (420)
Q Consensus 223 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~~~~~~l 302 (420)
..+...+|.+.+++|++..+.++..+.+.++..++.++.|+++||+ +||+.+.++.++..++.+.....+...+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~~~~~~~~~~~~~~~~l 90 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF------GEERSVAAGLLLIAAGILIRSAPGTALL 90 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh------CchHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3456688999999999999999999999999999999999999999 5556677777666666655444455567
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHH
Q 014716 303 YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFL 382 (420)
Q Consensus 303 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~ 382 (420)
++..++.|++.+...+..+..+.|.++ ++|+++.|+.+.+..+|. .+++.+.+.+.+..+. .|+..|.
T Consensus 91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~-~i~~~~~~~l~~~~~~----------~w~~~f~ 158 (355)
T TIGR00896 91 FAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGA-ALAAAATVPLAQHSGG----------HWQQALA 158 (355)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhh----------hHHHHHH
Confidence 778888999999888888888899886 689999999999999998 5788888888776431 1888888
Q ss_pred HHHHHHHHH
Q 014716 383 IMASVAFVG 391 (420)
Q Consensus 383 i~~~~~~~~ 391 (420)
+.+++++++
T Consensus 159 ~~~~~~~~~ 167 (355)
T TIGR00896 159 WWALPALLA 167 (355)
T ss_pred HHHHHHHHH
Confidence 776655443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=117.53 Aligned_cols=176 Identities=13% Similarity=0.092 Sum_probs=144.5
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
+.-+|++.|..+|+..++...+..+....++.+..+..-|+...++......+..++..+++|.++||+ +||.+
T Consensus 4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~------drrri 77 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRF------DRRRI 77 (524)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------cchHH
Confidence 456889999999999998888777777778888777777788888888889999999999999999999 66677
Q ss_pred HHHHHHHHHHHHHHHH------hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhh
Q 014716 280 IAITLATMSVGHIVVA------SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 353 (420)
Q Consensus 280 ~~i~~~~~~~~~l~l~------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 353 (420)
+..+.++.++..+.+. ..+++.+++..++.|++.+...+...+++++++|+++...+.++.++..+++. ++||
T Consensus 78 li~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar-~iGP 156 (524)
T PF05977_consen 78 LILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIAR-IIGP 156 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHH-hccc
Confidence 7777766655433322 23445677888899999999999999999999999999999999999999998 5899
Q ss_pred HHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 014716 354 RIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 354 ~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
.++|.++...| ..++|.+.++..++.+++
T Consensus 157 algG~Lva~~G------------~~~~f~inalsfl~~i~~ 185 (524)
T PF05977_consen 157 ALGGILVAFFG------------AAAAFLINALSFLISILA 185 (524)
T ss_pred hHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 99999998887 668888877766665443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.6e-11 Score=113.47 Aligned_cols=148 Identities=16% Similarity=0.140 Sum_probs=132.7
Q ss_pred CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhh
Q 014716 237 GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGC 315 (420)
Q Consensus 237 g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~ 315 (420)
+-+..+.|++.....+.+.+..++.|.+.||+ +++..+.+++.++..+.++++ ..+...+++++.+.|+|.++
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i------Gy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~ 175 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRI------GYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAF 175 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHh------ccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHH
Confidence 45567899999999999999999999999999 777889999999999999988 45667899999999999999
Q ss_pred hhhhHHHHHHHhhCCCc-hHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 014716 316 QWSLMPTITYEIFGVGH-MGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 316 ~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
.+....++++|.||.++ ||+++|+.-....+|. +.+|+++|.+||..| ++.+|.++++++++...+
T Consensus 176 ~~tsglamlAd~f~~d~er~~vmGialgfislG~-lvgPpfGGilYe~~G------------k~aPFlVL~~v~Lld~~L 242 (464)
T KOG3764|consen 176 ADTSGLAMLADVFPEDNERGSVMGIALGFISLGV-LVGPPFGGILYEFAG------------KSAPFLVLAIVLLLDGAL 242 (464)
T ss_pred HHhhhHHHHHHHcccchhhhHHHHHHHHHHhccc-eecCCcccchHhhcC------------CcCcHHHHHHHHHHHHHH
Confidence 99999999999999876 7999999999999999 699999999999998 889999999999998887
Q ss_pred HHHHHHHhH
Q 014716 395 AFLLFIRTR 403 (420)
Q Consensus 395 ~~~~~~~~~ 403 (420)
.+++...++
T Consensus 243 ~l~vi~p~~ 251 (464)
T KOG3764|consen 243 QLLVIEPTE 251 (464)
T ss_pred HHheeCccc
Confidence 766554433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-10 Score=111.84 Aligned_cols=157 Identities=6% Similarity=0.013 Sum_probs=125.9
Q ss_pred hhccHHHHHHHcCCCccc-hhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchhH
Q 014716 225 TVNNISQIGESLGYPTSA-INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNL 302 (420)
Q Consensus 225 ~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~l 302 (420)
.....|++.+++|++.++ .+.+.+.+..+..+..+.+|+++||+ +-|+++.++.+...+..+++. ..+...+
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl------G~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L 118 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL------RYKPVLVLQALSFVCVWLLLLLGTSVWHM 118 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh------CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888999999 99999999999999999999999999 556677777777777777666 4456778
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHH
Q 014716 303 YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFL 382 (420)
Q Consensus 303 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~ 382 (420)
.+..++.|++.|..+ ....++...||+++|+++.|+.+.+..+|. ++++++.+. ....|- +-|+.-.+
T Consensus 119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~-~Ia~~L~ql-l~s~gW---------r~y~~Ln~ 186 (511)
T TIGR00806 119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGV-FLSSVLGQL-LVTLGW---------ISYSTLNI 186 (511)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHhcCc---------hhHHHHHH
Confidence 999999999999999 999999999999999999999999999999 578888888 444550 01344445
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014716 383 IMASVAFVGCLVAFLLF 399 (420)
Q Consensus 383 i~~~~~~~~~~~~~~~~ 399 (420)
+..+...+++++++++.
T Consensus 187 Isl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 187 ISLVFMTFSVFLALFLK 203 (511)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 55556666666666554
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-10 Score=111.80 Aligned_cols=175 Identities=11% Similarity=0.013 Sum_probs=118.4
Q ss_pred CHHHHHHHHHHHHhcccchhhhccHHHHHH-HcCCCccchhHHHHHHHH-HHHHhHhhhhhhhHhHhhhcCCChhHHHHH
Q 014716 205 TLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSI-WNFLGRFGGGYVSDIVLHRMGWERPSFIAI 282 (420)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~-~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i 282 (420)
|.+.|..++..++.......+...+|.+.+ ++|.+..+.++..+...+ +..++.+.+|+ +||+++ ||.++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~-----r~~~~~~ 87 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGD-----RKSLIVF 87 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccc-----hhHHHHH
Confidence 556777777777776666666777777664 569999999998876655 55566666666 899953 3344445
Q ss_pred HHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCch--HHHHHHHHHHhhhHHHHhhhHHHHHH
Q 014716 283 TLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHM--GTIFNTIAIASPVGSYVCSVRIIGYI 359 (420)
Q Consensus 283 ~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~~g~~~~~~~l~g~l 359 (420)
+.++.+++..++. ..+...+++...+.+...+...+....+..+..+++.| +...++.+.+..+|. +++|++++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~-~~g~~i~~~l 166 (393)
T PRK15011 88 CCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAW-VIGPPLAYAL 166 (393)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH-HHhhHHHHHH
Confidence 5555555555444 33334444444444444445566677777777766544 344578888999999 6899999999
Q ss_pred HHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 360 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 360 ~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
.+..| |+..|++.+..+++..+..+..
T Consensus 167 ~~~~g------------w~~~f~~~~~~~~~~~~~~~~~ 193 (393)
T PRK15011 167 AMGFS------------FTVMYLSAAVAFIVCGVMVWLF 193 (393)
T ss_pred HHhcC------------hHHHHHHHHHHHHHHHHHHHhh
Confidence 99887 9999999888777766554443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-11 Score=122.07 Aligned_cols=148 Identities=19% Similarity=0.191 Sum_probs=123.4
Q ss_pred ccHHHHHHHcCCC---ccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchhH
Q 014716 227 NNISQIGESLGYP---TSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNL 302 (420)
Q Consensus 227 ~~~~~~~~~~g~s---~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~l 302 (420)
...+.+.++.+.+ +.+.++..+++.++..++.++.|+++||+ |||+++.++.++.+++.++.. ..+...+
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~------Grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF------GRKKVLLLSTLVTAVSGVLTAFSPNYTVF 183 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc------cchHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 3456677777887 78899999999999999999999999999 667778888888888777666 5566778
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHH
Q 014716 303 YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFL 382 (420)
Q Consensus 303 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~ 382 (420)
++.+++.|++.+...+...+++.|.+|+++|+...++...+..+|. ++++.+++.+.+ |++.|+
T Consensus 184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~~~---------------wr~~~~ 247 (505)
T TIGR00898 184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGL-VLLPLVAYFIPD---------------WRWLQL 247 (505)
T ss_pred HHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhH---------------HHHHHH
Confidence 8899999999999999999999999999999999999999998888 577766655432 889999
Q ss_pred HHHHHHHHHHHHHH
Q 014716 383 IMASVAFVGCLVAF 396 (420)
Q Consensus 383 i~~~~~~~~~~~~~ 396 (420)
+.++.+++..+..+
T Consensus 248 ~~~i~~~~~~~~~~ 261 (505)
T TIGR00898 248 AVSLPTFLFFLLSW 261 (505)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777665543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.3e-11 Score=113.49 Aligned_cols=176 Identities=21% Similarity=0.269 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHHHc-C----CCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGESL-G----YPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 280 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g----~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~ 280 (420)
+.+|.++..-+.--++++++-..+-.|+... + +|++++.-+++.+....-+..+++||++||+- |++..+
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~L-----G~~~tI 95 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVL-----GTRRTI 95 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhc-----chhHHH
Confidence 4677888887777777788777777776533 5 99999988999888888889999999999995 888889
Q ss_pred HHHHHHHHHHHHHHHhc---CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCc--hHHHHHHHHHHhhhHHHHhhhHH
Q 014716 281 AITLATMSVGHIVVASG---FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGH--MGTIFNTIAIASPVGSYVCSVRI 355 (420)
Q Consensus 281 ~i~~~~~~~~~l~l~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~~~~~~l 355 (420)
.++.++++++++.++.. .+..+++.+++.++|.|.+-+...+++.|.+|+++ |-.+.++..++.++|+ +++|++
T Consensus 96 ~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGs-l~~p~i 174 (498)
T COG3104 96 VLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGS-LIAPII 174 (498)
T ss_pred HHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHH-HHHHHH
Confidence 99999999999999844 46678999999999999999999999999998765 5667777799999999 699999
Q ss_pred HHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 356 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 356 ~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
.+++.++.| |+..|-..++-..++++..++.+
T Consensus 175 ~~~~~~~~g------------~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 175 TGLLAINYG------------WHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred HHHHHHhhC------------HHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999988 99999999988888887655443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-10 Score=115.12 Aligned_cols=187 Identities=13% Similarity=0.112 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 285 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~ 285 (420)
+.++...+..+..........++.+++.+..|.+... .....+.++.++++..++.++.||+ +||.++..+..
T Consensus 295 ~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~------gRr~lll~s~~ 367 (513)
T KOG0254|consen 295 RLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF------GRRKLLLFGAA 367 (513)
T ss_pred HHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHhHH
Confidence 3444455555555555567888999999988887554 5556677888888888889999999 88888999999
Q ss_pred HHHHHHHHHHh----c-C----c---hh--HHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHh
Q 014716 286 TMSVGHIVVAS----G-F----P---GN--LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVC 351 (420)
Q Consensus 286 ~~~~~~l~l~~----~-~----~---~~--l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 351 (420)
.+.+++++++. . . . .. +....+.......+..++.+.+.+|.||.+.|+++.++....+.+...+.
T Consensus 368 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v 447 (513)
T KOG0254|consen 368 GMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI 447 (513)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH
Confidence 99988887651 1 1 1 11 11222222222233345566788999999999999999988888877544
Q ss_pred hhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHH
Q 014716 352 SVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCL-VAFLLFIRTRRFYKQVVLR 412 (420)
Q Consensus 352 ~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 412 (420)
...+-.+.+..+ ....|...++.+.+... ......+++|.+..++.++
T Consensus 448 -~~~~~~~~~~~~------------~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~ 496 (513)
T KOG0254|consen 448 -SFFFPFITEALG------------IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINE 496 (513)
T ss_pred -HHHHHHHHHhcc------------ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHH
Confidence 233333333322 23567777777777666 5666778888776555444
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-10 Score=114.65 Aligned_cols=149 Identities=16% Similarity=0.176 Sum_probs=111.9
Q ss_pred CccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHh-cC------chhHHHHHHHHHH
Q 014716 239 PTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVAS-GF------PGNLYVGSIIVGV 311 (420)
Q Consensus 239 s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~-~~------~~~l~~~~~l~G~ 311 (420)
++.+.+++.+...++..++.+++|+++||+ +||+.+.++.++..++.++... .+ ...+++.+++.|+
T Consensus 54 ~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~------Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~ 127 (502)
T TIGR00887 54 PSSVSAAVNGSASIGTLAGQLFFGWLADKL------GRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGV 127 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHH
Confidence 445667889999999999999999999999 7777788888877777766552 22 2457888999999
Q ss_pred hhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCC-----CCCcc------ccccccHHH
Q 014716 312 CYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASG-----EGNSC------NGTHCFMLS 380 (420)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~-----~~~~c------~g~~~~~~~ 380 (420)
+.|...+..+.+++|.+|++.||++.++.+....+|. ++++.+...+....... ....| .....||..
T Consensus 128 ~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~ 206 (502)
T TIGR00887 128 GIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGI-LAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRIL 206 (502)
T ss_pred HHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccccccccccccccccchhcccHHHH
Confidence 9999999999999999999999999999999999998 57777776654322110 00000 011249999
Q ss_pred HHHHHHHHHHHHHH
Q 014716 381 FLIMASVAFVGCLV 394 (420)
Q Consensus 381 f~i~~~~~~~~~~~ 394 (420)
|.+.++.+++.++.
T Consensus 207 ~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 207 IGFGAVPALLALYF 220 (502)
T ss_pred HHHHHHHHHHHHHH
Confidence 97766666555444
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-08 Score=103.10 Aligned_cols=159 Identities=9% Similarity=-0.054 Sum_probs=112.9
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
+.+++|+.++.+.+..++............+++.+....+....+.+.+...+..+++.+++++++||++ +|..
T Consensus 225 ~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g------kk~~ 298 (473)
T PRK10429 225 ALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLS------RRIL 298 (473)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------cHHH
Confidence 4566888888887777766655555555555565555334555666667777888999999999999995 4455
Q ss_pred HHHHHHHHHHHHHHHH------hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhh-------CCCchHHHHHHHHHHhhh
Q 014716 280 IAITLATMSVGHIVVA------SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIF-------GVGHMGTIFNTIAIASPV 346 (420)
Q Consensus 280 ~~i~~~~~~~~~l~l~------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~-------~~~~~g~~~g~~~~~~~~ 346 (420)
+.++..+.+++.+.+. ..+...+.+..++.|++.+..++..+++++|.. +.+..|..+|..+....+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~ 378 (473)
T PRK10429 299 WAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKG 378 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHH
Confidence 5555555444433321 112233555667788999999999999999984 356678899999999999
Q ss_pred HHHHhhhHHHHHHHHhhcC
Q 014716 347 GSYVCSVRIIGYIYDNVAS 365 (420)
Q Consensus 347 g~~~~~~~l~g~l~~~~g~ 365 (420)
|. .+++.+.|.+.+..|-
T Consensus 379 ~~-al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 379 GS-AFAAFFIGVVLGLIGY 396 (473)
T ss_pred HH-HHHHHHHHHHHHHcCC
Confidence 99 4889999999987763
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.3e-10 Score=111.82 Aligned_cols=147 Identities=12% Similarity=0.028 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHH
Q 014716 207 NFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT 286 (420)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~ 286 (420)
.++.+++.++............+|.+.+++|.++.+.++..+.+.++..++.+..|+++||+ +||+.+.++..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~------G~r~~l~~g~~~ 100 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL------SYKAGIITGLFL 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHH
Confidence 55666666666666666677788999888899999999999999999999999999999999 777889999999
Q ss_pred HHHHHHHHH----hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHH
Q 014716 287 MSVGHIVVA----SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIY 360 (420)
Q Consensus 287 ~~~~~l~l~----~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~ 360 (420)
.+++.+++. ..+...+++.+++.|++.|...+..+.++.+..+.++++...++.+....+|. .+++.+++.+.
T Consensus 101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~-~~g~~~g~~l~ 177 (438)
T PRK10133 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA-IIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 998887642 34556688889999999999999999999987666666667888888888888 47777766544
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-10 Score=112.24 Aligned_cols=159 Identities=13% Similarity=0.078 Sum_probs=120.3
Q ss_pred cchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHhc---
Q 014716 221 SGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASG--- 297 (420)
Q Consensus 221 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~~--- 297 (420)
........+|.++++.|++.++.+++..+... .+.++++|+++||+..+..-.||.++.++..+.+++...+...
T Consensus 14 ~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~ 91 (402)
T PRK11902 14 PLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPH 91 (402)
T ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCcc
Confidence 33446678999999999999999998766655 5889999999999932111034456777777776666655522
Q ss_pred -CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhh-cCCCCCcccccc
Q 014716 298 -FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV-ASGEGNSCNGTH 375 (420)
Q Consensus 298 -~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~-g~~~~~~c~g~~ 375 (420)
+...+++..++.+++.+...+...+++.|.+|+++|+++.++...+..+|. ++++.+.+.+.+.. |
T Consensus 92 ~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~-i~g~~l~~~l~~~~~g----------- 159 (402)
T PRK11902 92 AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAM-LVSGGLALWLADRVLG----------- 159 (402)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHH-HHHhHHHHHHHhcccC-----------
Confidence 123345555666777788888999999999999999999999999999998 57888888888854 5
Q ss_pred ccHHHHHHHHHHHHHHHHH
Q 014716 376 CFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 376 ~~~~~f~i~~~~~~~~~~~ 394 (420)
|+..|++.+++.++..+.
T Consensus 160 -w~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 160 -WGNTYLLMAGLMLAGALT 177 (402)
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 999999988877665543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.6e-10 Score=112.12 Aligned_cols=181 Identities=11% Similarity=0.017 Sum_probs=132.7
Q ss_pred HhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHH
Q 014716 202 SVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIA 281 (420)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~ 281 (420)
..++++.+.++...+............+|.+.++.|.+..+.+.+ +...... ++++++|+++||+.+.+.-+||.++.
T Consensus 8 ~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll 85 (491)
T PRK11010 8 IFQQPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLL 85 (491)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHH
Confidence 334445555555555555555567778899999999998888876 3333332 68999999999984322213445666
Q ss_pred HHHHHHHHHHHHHHhc----CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHH
Q 014716 282 ITLATMSVGHIVVASG----FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIG 357 (420)
Q Consensus 282 i~~~~~~~~~l~l~~~----~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g 357 (420)
++.+..+++...++.. +...+.+..++.+++.+...+...++..|.+|+++||++.++...+..+|. ++++.+.+
T Consensus 86 ~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~-llg~~l~~ 164 (491)
T PRK11010 86 ATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAM-LVSGGLAL 164 (491)
T ss_pred HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 7777777766655422 233466677788999888888999999999999999999999999999998 58888899
Q ss_pred HHHHh-hcCCCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 014716 358 YIYDN-VASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 358 ~l~~~-~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
.+.+. .| |+..|++.+++.++..+..+.
T Consensus 165 ~l~~~~~G------------Wr~~f~i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 165 WLADRYLG------------WQGMYWLMAALLIPCIIATLL 193 (491)
T ss_pred HHHhcccC------------HHHHHHHHHHHHHHHHHHHHh
Confidence 98884 45 999999998887776554443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-10 Score=106.21 Aligned_cols=136 Identities=13% Similarity=0.133 Sum_probs=101.8
Q ss_pred HHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHH
Q 014716 248 SLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYE 326 (420)
Q Consensus 248 ~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~ 326 (420)
.+.++..+-|.++.+++.||+ |||..+...+++.++..+++. ..+.....+..+..-++..+.+.+.+.+.+|
T Consensus 388 litslaefPGlLIt~~iverl------GRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPE 461 (528)
T KOG0253|consen 388 LITSLAEFPGLLITGVIVERL------GRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPE 461 (528)
T ss_pred HHHHHhhCCchhHHHHHHHHh------cchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCc
Confidence 345677888999999999999 777789999888888877765 4444444555555556666667788899999
Q ss_pred hhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014716 327 IFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRR 404 (420)
Q Consensus 327 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~ 404 (420)
+||++.|+++.|.......+|+ ++.|+++ ...+..- + .+..+.+.+++++.++..++..++|.
T Consensus 462 VyPTavRatgvGtcSsmaRIgg-I~~p~iA-~~~e~s~------------s-l~i~vy~~~~ilagIavcffPiEtkG 524 (528)
T KOG0253|consen 462 VYPTAVRATGVGTCSSMARIGG-IFSPVIA-MRAELST------------S-LPIFVYGALFILAGIAVCFFPIETKG 524 (528)
T ss_pred ccchhhhhcchhhhhhHHhhhh-hhhhHHH-HHhccce------------e-ehHHHHHHHHHHHHHHheeeeeccCC
Confidence 9999999999999999999999 6888888 3333222 2 45556667777777776666556654
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-11 Score=124.61 Aligned_cols=164 Identities=14% Similarity=0.133 Sum_probs=126.1
Q ss_pred hhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHhc------
Q 014716 224 ATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASG------ 297 (420)
Q Consensus 224 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~~------ 297 (420)
.+...++++-+++++++.+.|++.+.+.+++.++.++.|++.||+ +|+.++.++.++++++.++++..
T Consensus 51 ~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~------~r~~~i~~g~ll~~lg~ll~alphf~~~~ 124 (633)
T TIGR00805 51 LVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL------HRPIVIGIGCAIMGLGSFLLSLPHFLSGR 124 (633)
T ss_pred HHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc------CcceEEEecHHHHHHHHHHHhChHHhcCC
Confidence 345566777778899999999999999999999999999999999 55566777888888887766521
Q ss_pred --------------------------------------------C--chhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCC
Q 014716 298 --------------------------------------------F--PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVG 331 (420)
Q Consensus 298 --------------------------------------------~--~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~ 331 (420)
+ ...++++.++.|+|.+..++...+++.|.+|++
T Consensus 125 y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~ 204 (633)
T TIGR00805 125 YSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK 204 (633)
T ss_pred ccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcc
Confidence 0 123567899999999999999999999999999
Q ss_pred chHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCC----CCcccc------ccccHHHHHHHHHHHHHHHHH
Q 014716 332 HMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGE----GNSCNG------THCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 332 ~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~----~~~c~g------~~~~~~~f~i~~~~~~~~~~~ 394 (420)
+++...|+.+.+..+|. ++|++++|.+.+...+-+ +..-.. ...|+..|++.+++.++..+.
T Consensus 205 ~~~~~~~i~~~~~~iG~-~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~ 276 (633)
T TIGR00805 205 NSPLYIGILESIAVFGP-AFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP 276 (633)
T ss_pred ccHHHHHHHHHHHHhhh-HHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 589999998886542100 000001 113666777777766665544
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-09 Score=109.30 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=97.8
Q ss_pred HHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCch--------hHHHHHHHHHHhhhhhhhhH
Q 014716 250 WSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPG--------NLYVGSIIVGVCYGCQWSLM 320 (420)
Q Consensus 250 ~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~--------~l~~~~~l~G~~~g~~~~~~ 320 (420)
..++..+|.++.|+++||+ +||..+.++..+.+++.++.+ .++.. .+++.+++.|++.|+.++..
T Consensus 73 ~~~~~~~g~~~~G~l~Dr~------Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~ 146 (438)
T PRK09952 73 GFLFRPLGGVVFGHFGDRL------GRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGA 146 (438)
T ss_pred HHHHHhhHHHHHHHHHHhh------ccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHH
Confidence 3355678888899999999 777888889989888888777 34433 37778999999999999999
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHH
Q 014716 321 PTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFV 390 (420)
Q Consensus 321 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~ 390 (420)
..++.|.+|+++||...+..+.+..+|. ++++.+.+.+....++. . ....+||..|++.++..++
T Consensus 147 ~~~~~e~~p~~~rg~~~~~~~~g~~~G~-~l~~~~~~~l~~~~~~~---~-~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 147 ALLAVESAPKNKKAFYSSGVQVGYGVGL-LLSTGLVSLISMMTTDE---Q-FLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred HHHHHHhCCCCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHH---H-hhccChHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 46666666554321100 0 0011299999887665443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.7e-10 Score=112.00 Aligned_cols=159 Identities=9% Similarity=-0.005 Sum_probs=119.8
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
.++++||+.++...+..++............|++.++. |.++...++......++..++.++.++++||+ +++
T Consensus 221 ~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~------g~~ 294 (448)
T PRK09848 221 LQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI------GKK 294 (448)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CcH
Confidence 46788999999888888777766666666778777765 76655444444444667888999999999999 555
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCC-------CchHHHHHHHHHHhhhH
Q 014716 278 SFIAITLATMSVGHIVVASG---FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGV-------GHMGTIFNTIAIASPVG 347 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g 347 (420)
..+.++.++.+++.+.+... +.+.+++..++.|+|.+...+...++.+|..+. +..|..+|+.+....+|
T Consensus 295 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg 374 (448)
T PRK09848 295 NTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCG 374 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHH
Confidence 66777777777766655422 223345567778999999999999998887754 34699999999999999
Q ss_pred HHHhhhHHHHHHHHhhc
Q 014716 348 SYVCSVRIIGYIYDNVA 364 (420)
Q Consensus 348 ~~~~~~~l~g~l~~~~g 364 (420)
. .+++.+.|.+.+..|
T Consensus 375 ~-aig~~i~g~~l~~~G 390 (448)
T PRK09848 375 Q-AIGGSIPAFILGLSG 390 (448)
T ss_pred H-HHHHHHHHHHHHHcC
Confidence 9 588999999988766
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-09 Score=111.10 Aligned_cols=153 Identities=11% Similarity=0.093 Sum_probs=117.7
Q ss_pred hhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHh------
Q 014716 223 LATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVAS------ 296 (420)
Q Consensus 223 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~------ 296 (420)
+.+....+.+.+++|++..+.+++.+... ...++.+.+|+++||+ |+|+++.++.++..++.++++.
T Consensus 44 y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~------G~R~vllig~ll~~iG~ll~ala~~~~i 116 (591)
T PTZ00207 44 YAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL------GPRPIFVLSMTVFCLGTLLFALTFQEVI 116 (591)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34555667787888999988888776633 3345666789999999 7778899999999999887663
Q ss_pred -cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCcccccc
Q 014716 297 -GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTH 375 (420)
Q Consensus 297 -~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~ 375 (420)
.+.+.+.+..++.|++.+...+.....+.+.|| ++||.+.|+...+..+|+.+++++..+.+.+ +
T Consensus 117 ~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~----------- 182 (591)
T PTZ00207 117 EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD--N----------- 182 (591)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h-----------
Confidence 244557778888999988888888888899997 7899999999999999997667666665542 2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH
Q 014716 376 CFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 376 ~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
|+..|++.+++.++..++.+.
T Consensus 183 -~~~~fl~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 183 -TSAYFFFLMSFALVVGILAIV 203 (591)
T ss_pred -HHHHHHHHHHHHHHHHHHHHh
Confidence 777888887777766555444
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.6e-10 Score=110.41 Aligned_cols=161 Identities=9% Similarity=0.037 Sum_probs=117.5
Q ss_pred HHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHH
Q 014716 209 WLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMS 288 (420)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~ 288 (420)
+.+.+.+++.......+...+|.+.+++|+|..+.++..+...+...++.+++|.++||++|+.. .+..+.++..+..
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~--~~~~~~~~~~l~~ 84 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIII--ALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH--HHHHHHHHHHHHH
Confidence 44445555555544557778899999999999999999999999999999999999999954321 1122222222222
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCC
Q 014716 289 VGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEG 368 (420)
Q Consensus 289 ~~~l~l~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~ 368 (420)
+... ...++.+.+++..++.|.+.+...+...++..+. .+++++++|....+..+|. +++|++.|.+.+..|
T Consensus 85 ~~~~-~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~-~~g~~l~g~l~~~~g---- 156 (382)
T TIGR00902 85 AAFS-AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAF-IIGSALFGGLIGMFD---- 156 (382)
T ss_pred HHHH-HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHH-HHHHHHHHHHHHHcC----
Confidence 2111 1134456667777778888887778777776553 4678999999999999998 589999999999888
Q ss_pred CccccccccHHHHHHHHHH
Q 014716 369 NSCNGTHCFMLSFLIMASV 387 (420)
Q Consensus 369 ~~c~g~~~~~~~f~i~~~~ 387 (420)
|+..|++.+.+
T Consensus 157 --------~~~~f~~~~~~ 167 (382)
T TIGR00902 157 --------EQNILAILTAG 167 (382)
T ss_pred --------hhHHHHHHHHH
Confidence 99999887655
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=113.43 Aligned_cols=151 Identities=11% Similarity=0.003 Sum_probs=112.7
Q ss_pred hhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchh
Q 014716 223 LATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGN 301 (420)
Q Consensus 223 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~ 301 (420)
..+...+|.+.+++|.|..+.++.++...+...++.++.|.++||++|++. .++... +...+..+ .... .++.+.
T Consensus 21 g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~-~~~~~~-~~~~~~~~--~~~~~~~~~~~ 96 (382)
T PRK11128 21 GVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIP-ALRLLA-LLTLLFAV--AFWFGAHSFWL 96 (382)
T ss_pred HHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHH-HHHHHH-HHHHHHHH--HHHHhcccHHH
Confidence 456678889999999999999999999999999999999999999975421 122222 22222111 1122 344555
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHH
Q 014716 302 LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSF 381 (420)
Q Consensus 302 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f 381 (420)
+++..++.|++.+...+...+++.+. .++++.++|.......+|. +++|.++|.+.++.| |+..|
T Consensus 97 l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~-~igp~lgg~l~~~~g------------~~~~f 161 (382)
T PRK11128 97 LFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAF-VIGSALTGKLVSWFG------------EQAIL 161 (382)
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHH-HHHHHHHHHHHHHcC------------hhHHH
Confidence 66777888988888888877777765 3567888888888889998 689999999999888 99999
Q ss_pred HHHHHHHHHHH
Q 014716 382 LIMASVAFVGC 392 (420)
Q Consensus 382 ~i~~~~~~~~~ 392 (420)
++.++..++.+
T Consensus 162 ~~~~~~~~~~~ 172 (382)
T PRK11128 162 WILTAGVASML 172 (382)
T ss_pred HHHHHHHHHHH
Confidence 87776544443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-09 Score=109.17 Aligned_cols=159 Identities=17% Similarity=0.119 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHH-HHHH-----HHHHHHhHhhhhhhhHhHhhhcCCChhHHHH
Q 014716 208 FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSL-VSLW-----SIWNFLGRFGGGYVSDIVLHRMGWERPSFIA 281 (420)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~-~~~~-----~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~ 281 (420)
....++..++...-...+....|.+.++++.++.+.+.. .+.. .+...+|.++.|+++||+ +||+.+.
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~------Grr~~l~ 90 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV------GRRKGLI 90 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh------chHHHHH
Confidence 334445555555555567778888989998877665433 2222 222346788999999999 6777888
Q ss_pred HHHHHHHHHHHHHH-hcCch--------hHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhh
Q 014716 282 ITLATMSVGHIVVA-SGFPG--------NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCS 352 (420)
Q Consensus 282 i~~~~~~~~~l~l~-~~~~~--------~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~ 352 (420)
.+..+..++.+++. .++.. .+++.+++.|++.|..++....+++|.+|+++||+..++.+.+..+|. .++
T Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~-~~g 169 (434)
T PRK15075 91 VTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAV-VFA 169 (434)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHH-HHH
Confidence 88888888888776 33333 357788999999999888889999999999999999999988877776 466
Q ss_pred hHHHHHHH--------HhhcCCCCCccccccccHHHHHHHH
Q 014716 353 VRIIGYIY--------DNVASGEGNSCNGTHCFMLSFLIMA 385 (420)
Q Consensus 353 ~~l~g~l~--------~~~g~~~~~~c~g~~~~~~~f~i~~ 385 (420)
+.+++.+. +..| ||++|++..
T Consensus 170 ~~~g~~l~~~~~~~~~~~~g------------Wr~~f~~~~ 198 (434)
T PRK15075 170 ALLGYLLNQWLSPAQMAEWG------------WRIPFLIGC 198 (434)
T ss_pred HHHHHHHHHhCCHHHHhccc------------hHHHHHHHH
Confidence 66666553 2334 999998643
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.1e-10 Score=125.29 Aligned_cols=176 Identities=12% Similarity=0.070 Sum_probs=123.6
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHH-HHc----CCC-ccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcC
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIG-ESL----GYP-TSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMG 273 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----g~s-~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~ 273 (420)
.+++++++|+.+++..++...........+..+. ... +.+ ....++..+++.+...+..+++|+++||++
T Consensus 5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~---- 80 (1140)
T PRK06814 5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYD---- 80 (1140)
T ss_pred hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhcc----
Confidence 3467788888887777776654333322222221 122 221 134566777888999999999999999994
Q ss_pred CChhHHHHH----HHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHH
Q 014716 274 WERPSFIAI----TLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSY 349 (420)
Q Consensus 274 ~~r~~~~~i----~~~~~~~~~l~l~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 349 (420)
||.++.. ...+.+.+.+.+...+.+.++++.++.|++.+...+...+++.+++++++++.++|+.+++..+|.
T Consensus 81 --rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~- 157 (1140)
T PRK06814 81 --KAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAI- 157 (1140)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHH-
Confidence 4444322 112222222222235667789999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 014716 350 VCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 350 ~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
+++|.++|.+.+..+ |++.|+..+.+.++++++
T Consensus 158 ~igp~l~g~l~~~~~------------~~~~~~~~~~~~~~~~~~ 190 (1140)
T PRK06814 158 LLGTIIGGLATISGN------------FVILVALLMGIAVLGWLA 190 (1140)
T ss_pred HHHHHHHHHHHhccc------------cHHHHHHHHHHHHHHHHH
Confidence 699999999998776 888884444444444433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-10 Score=108.49 Aligned_cols=166 Identities=13% Similarity=0.017 Sum_probs=120.1
Q ss_pred hhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhH-HHHHHHHHHHHHHHHHHhc----C
Q 014716 224 ATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS-FIAITLATMSVGHIVVASG----F 298 (420)
Q Consensus 224 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~-~~~i~~~~~~~~~l~l~~~----~ 298 (420)
.+...+|.+.++.|+|.++.++.... .+...+ ++++|+++||+..|+. |||. ++..+.++.++..+.+... +
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~-Grr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFF-GRRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCC-CccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 34567889999999999998888644 444444 8999999999954332 4444 4566666666665555422 1
Q ss_pred chhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccH
Q 014716 299 PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFM 378 (420)
Q Consensus 299 ~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~ 378 (420)
...+....++.+++.+...+...+++.|.+|+|+|+.+.|+...+..+|. ++++.+.+.+.+..+..+ ....+|+
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~l~~~l~~~~g~~~----~~~~~wr 157 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGM-LLSGSLALVLASPEFANT----GLITLWG 157 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHH-HHHHHHHHHHhhhccccc----ccccccH
Confidence 22344555566777777788889999999999999999999999999998 588889998887765211 1234599
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014716 379 LSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 379 ~~f~i~~~~~~~~~~~~~~ 397 (420)
..|++.+++.+++.+..++
T Consensus 158 ~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 158 YIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999888877776655443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.4e-14 Score=141.02 Aligned_cols=167 Identities=17% Similarity=0.159 Sum_probs=110.7
Q ss_pred hhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH------hc
Q 014716 224 ATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA------SG 297 (420)
Q Consensus 224 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~------~~ 297 (420)
...++.+.+.++.|.+.. -.......+...++.+++.++.||+ +||..+.++..+.+++.+.+. ..
T Consensus 271 ~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------GRr~~~i~~~~~~~~~~~~~~~~~~~~~~ 342 (451)
T PF00083_consen 271 FIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF------GRRKLLIIGLLLMAICSLILGIIFFLGVS 342 (451)
T ss_pred cccccccccccccccccc--ccccccccccccccccccccccccc------ccccccccccccccccccccccccccccc
Confidence 455566777777777765 2233455566777888888999999 566666666666666555442 11
Q ss_pred Cc---h-hHHHHHHHHHHhhh-hhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccc
Q 014716 298 FP---G-NLYVGSIIVGVCYG-CQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCN 372 (420)
Q Consensus 298 ~~---~-~l~~~~~l~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~ 372 (420)
+. . ..+....+...+.+ +..+..+.++.|.||++.|+++.|+....+.+++ ++++.+...+.+..+
T Consensus 343 ~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~-~i~~~~~~~~~~~~~-------- 413 (451)
T PF00083_consen 343 SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGG-FIIPFLFPYLFNNLG-------- 413 (451)
T ss_pred cccccccccceeeeeccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc--------
Confidence 11 1 12222222222333 3345666888999999999999999988888888 467778777776654
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 014716 373 GTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVL 411 (420)
Q Consensus 373 g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (420)
....|.+.+++++++.+....+.+++|++..++.+
T Consensus 414 ----~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~ 448 (451)
T PF00083_consen 414 ----GWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQ 448 (451)
T ss_pred ----ccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHH
Confidence 23667777777777777766677888886555443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.9e-10 Score=123.56 Aligned_cols=155 Identities=10% Similarity=0.101 Sum_probs=117.6
Q ss_pred HHhhCHHHHHHHHHHHHhcccchhhhccH-HHHHHHcCCCc--cchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 201 QSVCTLNFWLLFVAMLCGMGSGLATVNNI-SQIGESLGYPT--SAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~--~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
+.++++.|+.+++..++......++...+ +.+..+++.+. ...++..+++.++..++.+++|+++||+ +||
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~------grk 77 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF------SKN 77 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc------cHH
Confidence 45677888888877777654443333333 33444455443 3357778889999999999999999999 666
Q ss_pred HHHHHHHHHHHHHHHHHH----hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhh
Q 014716 278 SFIAITLATMSVGHIVVA----SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 353 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~----~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 353 (420)
+++.++.++.++..++.. ..+...+++..++.|++.+...+...++++|.+|+++|+.+.|+.+++..+|. ++++
T Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~-~lg~ 156 (1146)
T PRK08633 78 RVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAI-LAGT 156 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHH-HHHH
Confidence 767766655444433322 34556688889999999999999999999999999999999999999999998 6899
Q ss_pred HHHHHHHHh
Q 014716 354 RIIGYIYDN 362 (420)
Q Consensus 354 ~l~g~l~~~ 362 (420)
.+++.+.+.
T Consensus 157 ~l~~~l~~~ 165 (1146)
T PRK08633 157 ALFSFLFES 165 (1146)
T ss_pred HHHHHHHHh
Confidence 999998876
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-10 Score=106.51 Aligned_cols=180 Identities=14% Similarity=0.174 Sum_probs=146.6
Q ss_pred cHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHH-HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCCh
Q 014716 198 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 276 (420)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r 276 (420)
++++..+.++....+++.++..-...+.+.....+.. ++|++..+..++....++..++|.++.|++.||++ -
T Consensus 244 t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg------~ 317 (438)
T COG2270 244 TFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFG------S 317 (438)
T ss_pred HHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------C
Confidence 4566777777777777777776666666777777777 67999999999999999999999999999999995 3
Q ss_pred hHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHH
Q 014716 277 PSFIAITLATMSVGHIVV-ASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRI 355 (420)
Q Consensus 277 ~~~~~i~~~~~~~~~l~l-~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l 355 (420)
|.++.+++++..+.++.. .......+.++..++|+..|..++..-++..+++|+++-+..+|+.++.+..++ .++|.+
T Consensus 318 k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S-~~gp~l 396 (438)
T COG2270 318 KPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAAS-FLGPFL 396 (438)
T ss_pred ceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHH-HHHHHH
Confidence 345566665555554443 344556678888899999999999999999999999999999999999999999 599999
Q ss_pred HHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHH
Q 014716 356 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 395 (420)
Q Consensus 356 ~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~ 395 (420)
.+.+.+.+|+ -|..+.....+..+++++.
T Consensus 397 v~v~t~iTg~-----------~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 397 VAVITQITGS-----------SRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred HHHHHHHhcc-----------hhhHHHHHHHHHHhhHhhE
Confidence 9999999987 7778877777777776553
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.7e-10 Score=105.32 Aligned_cols=175 Identities=14% Similarity=0.121 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 285 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~ 285 (420)
+.+|+.++....++...+......+++-++.|+|+.+.++++++..+...+.|+.-|.+.||+| -|.+.+++.+
T Consensus 14 ~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfG------gR~~~~~s~~ 87 (417)
T COG2223 14 RNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFG------GRKWTILSML 87 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccC------chHHHHHHHH
Confidence 4566666666665555555555666666788999999999999999999999999999999995 4445666777
Q ss_pred HHHHHHHHHH-h-c--CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHH
Q 014716 286 TMSVGHIVVA-S-G--FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYD 361 (420)
Q Consensus 286 ~~~~~~l~l~-~-~--~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~ 361 (420)
+..+.++.++ . . +.+.+++..++.|++ |+.++.....++..||+|++|++.|+.. .+++|.. +..+++..+..
T Consensus 88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~a-v~q~~~P~v~~ 164 (417)
T COG2223 88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVA-VAQLVAPLVAV 164 (417)
T ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHH-HHHHHHHHHHH
Confidence 7777766655 2 2 223688888888887 5566788899999999999999999996 6666663 44555555555
Q ss_pred hhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 362 NVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 362 ~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
..+. ..|+.+..+.....+++.+..++.
T Consensus 165 ~~g~---------~~w~~~~~i~~~~l~v~~v~~~~~ 192 (417)
T COG2223 165 AFGF---------LAWRNVAGIYVVALAIAAVLAWLG 192 (417)
T ss_pred HHhh---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4440 017778777777777777666554
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.5e-08 Score=95.66 Aligned_cols=161 Identities=9% Similarity=0.030 Sum_probs=109.0
Q ss_pred cHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 198 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
..++.+||+.+|.+++..++.............++.+..-.+++..+.+.....+..+++.+++++++||++| +
T Consensus 221 ~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk------~ 294 (444)
T PRK09669 221 DLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDR------V 294 (444)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh------H
Confidence 3467789999998877766654443333333344444332223334445556667788899999999999954 3
Q ss_pred HHHHHHHHHHHHHHH-HHH--hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhC-------CCchHHHHHHHHHHhhhH
Q 014716 278 SFIAITLATMSVGHI-VVA--SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFG-------VGHMGTIFNTIAIASPVG 347 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l-~l~--~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g 347 (420)
..+.++.++.++..+ ... ..+...+++..++.|++.+...+..+++++|..+ .+..|..+|+.+....+|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg 374 (444)
T PRK09669 295 RAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLG 374 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHH
Confidence 444444444433222 222 2233345666778899999999999999998874 455688899999999999
Q ss_pred HHHhhhHHHHHHHHhhcC
Q 014716 348 SYVCSVRIIGYIYDNVAS 365 (420)
Q Consensus 348 ~~~~~~~l~g~l~~~~g~ 365 (420)
. .+++.+.|.+.+..|-
T Consensus 375 ~-alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 375 L-AIGGAVVGWILAWVDY 391 (444)
T ss_pred H-HHHHHHHHHHHHHcCC
Confidence 8 5899999999998773
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4e-08 Score=96.02 Aligned_cols=160 Identities=16% Similarity=0.089 Sum_probs=124.4
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
....++|+.+..+.+..++.............+|.+.. |.++..+.........+..++.++..++++|+ ++|
T Consensus 229 ~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~------gkk 302 (467)
T COG2211 229 FLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF------GKK 302 (467)
T ss_pred HHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh------chH
Confidence 34678899988888877777766666666667776654 77766777777777777788899999999999 566
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHHhhhhhhhhHHHHHHHhh-------CCCchHHHHHHHHHHhhhH
Q 014716 278 SFIAITLATMSVGHIVVASG---FPGNLYVGSIIVGVCYGCQWSLMPTITYEIF-------GVGHMGTIFNTIAIASPVG 347 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~-------~~~~~g~~~g~~~~~~~~g 347 (420)
.+..++.++.+++.+++... +...+++..++.+++.+...+..+++++|.. +.|.-|..+|.++...-+|
T Consensus 303 ~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g 382 (467)
T COG2211 303 KLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLG 382 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 77888888888887776522 2334556668889999999999999998875 5566799999999999999
Q ss_pred HHHhhhHHHHHHHHhhcC
Q 014716 348 SYVCSVRIIGYIYDNVAS 365 (420)
Q Consensus 348 ~~~~~~~l~g~l~~~~g~ 365 (420)
.. ++..+.|++.+..|-
T Consensus 383 ~a-la~~~~g~~L~~~Gy 399 (467)
T COG2211 383 LA-LAGFIPGWILGAIGY 399 (467)
T ss_pred HH-HHHHHHHHHHHHcCC
Confidence 94 778899999988874
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-09 Score=106.88 Aligned_cols=180 Identities=16% Similarity=0.106 Sum_probs=121.2
Q ss_pred cccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh-HHHHHHHHHHHHHHHHHHh-
Q 014716 219 MGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP-SFIAITLATMSVGHIVVAS- 296 (420)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~-~~~~i~~~~~~~~~l~l~~- 296 (420)
.........+++.|.+++|.+....+++..+..+...+..|+.|++|||.-.|. ||| ..+..+.+..+++++++..
T Consensus 17 q~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~--GRRrp~il~g~~~~~~~l~ll~~~ 94 (477)
T TIGR01301 17 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF--GRRRPFIAAGAALVAFAVILIGFA 94 (477)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC--CChHHHHHHHHHHHHHHHHHHHhC
Confidence 344445666778888999999999999999999999999999999999632221 443 4444445555566555542
Q ss_pred cCc-----------------hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCch--HHHHHHHHHHhhhHHHHhhhHHHH
Q 014716 297 GFP-----------------GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHM--GTIFNTIAIASPVGSYVCSVRIIG 357 (420)
Q Consensus 297 ~~~-----------------~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~~g~~~~~~~l~g 357 (420)
.+. ....+...+..++....+++..++++|.+|+++| +.++++.+....+|+ ++++.+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~-ilg~~~g~ 173 (477)
T TIGR01301 95 ADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGN-VLGYAAGA 173 (477)
T ss_pred chhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 111 1122333344567788888999999999998865 679999999999998 58777776
Q ss_pred HH--HHhhcCCCCCccc-cccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 014716 358 YI--YDNVASGEGNSCN-GTHCFMLSFLIMASVAFVGCLVAFLLFIR 401 (420)
Q Consensus 358 ~l--~~~~g~~~~~~c~-g~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 401 (420)
.. .+..+-..+..|. -...++..|++.+++.+++.++..+..+|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E 220 (477)
T TIGR01301 174 YSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKE 220 (477)
T ss_pred HHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence 54 2222211111222 12237899999888888887776654444
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=107.90 Aligned_cols=145 Identities=15% Similarity=0.225 Sum_probs=124.6
Q ss_pred HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH---hcCchhHHHHHHHHHH
Q 014716 235 SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA---SGFPGNLYVGSIIVGV 311 (420)
Q Consensus 235 ~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~---~~~~~~l~~~~~l~G~ 311 (420)
+..+++++.+++.+....+..++.+.+|++.||+ |-|.++..+.++.+++.++.. ..+...+.+.+++.|+
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~------G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl 140 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF------GARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGL 140 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc------CchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHH
Confidence 3478899999999999999999999999999999 555667777777777777643 3344467899999999
Q ss_pred hhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHh-hcCCCCCccccccccHHHHHHHHHHHHH
Q 014716 312 CYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN-VASGEGNSCNGTHCFMLSFLIMASVAFV 390 (420)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~-~g~~~~~~c~g~~~~~~~f~i~~~~~~~ 390 (420)
+.|..++....+.++..|+++|++..++...+..+|. +++-++.|.+.+. .| |+.+|++.++++++
T Consensus 141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~-v~~mp~sg~lc~s~~G------------W~sifY~~g~~g~i 207 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGT-IITMPVSGLLCESSLG------------WPSIFYVFGIVGLI 207 (466)
T ss_pred HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHhccCCC------------CchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 5777899999998 66 99999999998888
Q ss_pred HHHHHHHH
Q 014716 391 GCLVAFLL 398 (420)
Q Consensus 391 ~~~~~~~~ 398 (420)
-.++-.++
T Consensus 208 ~~~~w~~~ 215 (466)
T KOG2532|consen 208 WFILWFLF 215 (466)
T ss_pred HHHHHHHH
Confidence 76654433
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.7e-09 Score=107.38 Aligned_cols=132 Identities=20% Similarity=0.257 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHH
Q 014716 243 INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMP 321 (420)
Q Consensus 243 ~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~ 321 (420)
.+++.+...++..+|.+++|+++|++ |||..+.++.++..++.++.+ ..+...+++++++.|+|.|....+.+
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~~------GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~p 164 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDRI------GRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAP 164 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcch
Confidence 38999999999999999999999999 777889999999999988877 56778899999999999999999999
Q ss_pred HHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhh--cCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 014716 322 TITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV--ASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 322 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~--g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
.+++|+-|++.||...+..++...+|. .++ .+.|...++. + ||..+.+..+.+++-.+.
T Consensus 165 iy~sEiap~~~RG~l~~~~~l~~~~Gi-~~~-~~~~~~~~~~~~~------------Wr~~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 165 VYISEIAPAHIRGTLVSLYQLFITIGI-LLG-YCINYGTSKVYAG------------WRIPLGLALIPAVILALG 225 (513)
T ss_pred hhHhhcCChhhhHHHHHHHHHHHHHHH-HHH-HHHhhhhccCCcc------------HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 455 5666655443 3 998888877777776655
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.5e-09 Score=100.73 Aligned_cols=130 Identities=19% Similarity=0.237 Sum_probs=96.3
Q ss_pred HHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCch--------hHHHHHHHHHHhhhhhhhhHHHH
Q 014716 253 WNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPG--------NLYVGSIIVGVCYGCQWSLMPTI 323 (420)
Q Consensus 253 ~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~--------~l~~~~~l~G~~~g~~~~~~~~~ 323 (420)
...++.++.|+++||+ +||+.+.++.++..++.+++. ..+.. .+++.+++.|++.+...+..+.+
T Consensus 47 ~~~i~~~~~G~l~dr~------g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~ 120 (394)
T TIGR00883 47 ARPLGAIVFGHFGDRI------GRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALY 120 (394)
T ss_pred HhhhHHHHhhhhhhhh------hhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHH
Confidence 3457889999999999 667778888888888877766 33322 36677889999999999999999
Q ss_pred HHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHH
Q 014716 324 TYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCL 393 (420)
Q Consensus 324 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~ 393 (420)
+.|.+++++|+...++.+.+..+|. ++++.+.+.+....+... .....|+..|++.+.+.+++..
T Consensus 121 ~~~~~~~~~r~~~~~~~~~~~~~G~-~i~~~~~~~~~~~~~~~~----~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 121 LAEYAPPGKRGFYGSFQQVGAPVGL-LLAALTVLLLSYLLGDDA----LLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred hhhcCCcccchHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHH----hhccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 577777666543211000 0011299999887766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=108.57 Aligned_cols=166 Identities=13% Similarity=0.153 Sum_probs=116.9
Q ss_pred hhccHHHHHH-HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHh-cCc---
Q 014716 225 TVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVAS-GFP--- 299 (420)
Q Consensus 225 ~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~-~~~--- 299 (420)
+..+++++++ +.|.++..++++.++..+...+..|+.|+++||.++|+. +||+++.++....+++.+++.. ++.
T Consensus 18 ~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~G-rrr~~i~~~~~~~~i~~~~~~~~~~~~~~ 96 (437)
T TIGR00792 18 VSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWG-KFRPWLLIGAIPFSIVLVLLFTTPDFSAT 96 (437)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCC-CcchhHHHhHHHHHHHHHHHHhCCCCCcc
Confidence 3344555555 569999999999999999999999999999999876654 4466777777777776665542 211
Q ss_pred ---hhHHHHHHHHHHhhhhhhhhHHHHHHHhh-CCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCcccccc
Q 014716 300 ---GNLYVGSIIVGVCYGCQWSLMPTITYEIF-GVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTH 375 (420)
Q Consensus 300 ---~~l~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~ 375 (420)
..+.+..++.+.+++....+..++.+|.. ++++|++..++.+.+..+|.. +++.+.+.+....+.. ....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~-l~~~~~~~l~~~~~~~-----~~~~ 170 (437)
T TIGR00792 97 GKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGL-LVAVIVLPLVSYFGGG-----DDKF 170 (437)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCC-----cccc
Confidence 12344556677788877778888888887 467899999998888888874 5555666665433210 0112
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH
Q 014716 376 CFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 376 ~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
.|+..+.+.++++++..++...
T Consensus 171 g~~~~~~i~~~l~~~~~~~~~~ 192 (437)
T TIGR00792 171 GWFMFALVLALIGVVSLIICFF 192 (437)
T ss_pred cHHHHHHHHHHHHHHHHHHHHc
Confidence 3899988888877776655433
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.1e-07 Score=90.46 Aligned_cols=159 Identities=9% Similarity=0.032 Sum_probs=100.2
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhH
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 278 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~ 278 (420)
++..++|+.++.+....++.............++.+...-++...+.+.....++++++.+++++++||++|| .
T Consensus 221 l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk------~ 294 (460)
T PRK11462 221 LRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKV------T 294 (460)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH------H
Confidence 4667788888777666555554444444445555554422333445667778888999999999999999543 3
Q ss_pred HHHHHHHHHHH-HHHHHHhcC--chhHHHHHHHHHHhhhhhhhhHHHHHHHhhC-------CCchHHHHHHHHHHhhhHH
Q 014716 279 FIAITLATMSV-GHIVVASGF--PGNLYVGSIIVGVCYGCQWSLMPTITYEIFG-------VGHMGTIFNTIAIASPVGS 348 (420)
Q Consensus 279 ~~~i~~~~~~~-~~l~l~~~~--~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~ 348 (420)
.+..+..+.++ +.+...... ...+++..++.|++.+...+..+++++|..+ .+.-|..++..+....+|.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~ 374 (460)
T PRK11462 295 IFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGL 374 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHH
Confidence 33322222222 222222222 2223444566777777777777778877654 5556777788778888888
Q ss_pred HHhhhHHHHHHHHhhc
Q 014716 349 YVCSVRIIGYIYDNVA 364 (420)
Q Consensus 349 ~~~~~~l~g~l~~~~g 364 (420)
.+++.+.|.+.+..|
T Consensus 375 -alg~~i~g~iL~~~G 389 (460)
T PRK11462 375 -AFGGALIGWMLAYGG 389 (460)
T ss_pred -HHHHHHHHHHHHHcC
Confidence 478888998888755
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-09 Score=100.73 Aligned_cols=115 Identities=18% Similarity=0.160 Sum_probs=99.3
Q ss_pred CccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhh
Q 014716 239 PTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQW 317 (420)
Q Consensus 239 s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~ 317 (420)
+..-+|.+-+.++++.++.++.+|.+|||+ |||.++.++.+..++..++.+ ..+...+.+.+++.|+..|-.
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y------GRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl- 138 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY------GRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL- 138 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhh------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-
Confidence 345578888999999999999999999999 888999999988888888777 444434555588899887754
Q ss_pred hhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHH
Q 014716 318 SLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYD 361 (420)
Q Consensus 318 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~ 361 (420)
++..++++|++++|+|+.+++.++++..+|- ++||.++|++..
T Consensus 139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGf-ilGPmIGgyla~ 181 (451)
T KOG2615|consen 139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGF-ILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHHhhcChhhccceeeeeehhhhcch-hhcchhhhHHHh
Confidence 6888999999999999999999999999998 699999999887
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.9e-09 Score=104.40 Aligned_cols=152 Identities=16% Similarity=0.227 Sum_probs=120.0
Q ss_pred HHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHH-HHHHHHHhcCchhHHHHHHHHHHh
Q 014716 234 ESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMS-VGHIVVASGFPGNLYVGSIIVGVC 312 (420)
Q Consensus 234 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~-~~~l~l~~~~~~~l~~~~~l~G~~ 312 (420)
+|.++...+-+...+++.++.++|.+.+|.+.||+ +-...+....++.. .+.+.....+.+.+++..++.|+.
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~------~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~ 147 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF------PLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLF 147 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC------ChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45567778889999999999999999999999999 42222333222222 222333366778899999999999
Q ss_pred hhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHH
Q 014716 313 YGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGC 392 (420)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~ 392 (420)
.++.+|....++...|++++||+.+|+.+....+|+ ++|++++..++...++ .+..+|++.|++.++++++..
T Consensus 148 es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~-i~ggliA~g~~~~~~~------~~~~gW~~~FiI~G~i~~~~g 220 (495)
T KOG2533|consen 148 ESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGN-IFGGLIAYGVFKLNGS------GGLAGWRWLFIIEGVITLVLG 220 (495)
T ss_pred hcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhh-HHHHHHHHHhhhhcCC------CCcCCceeehhHHHHHHHHHH
Confidence 999999999999999999999999999999999999 5888888887664442 245569999999999888877
Q ss_pred HHHHHH
Q 014716 393 LVAFLL 398 (420)
Q Consensus 393 ~~~~~~ 398 (420)
++.++.
T Consensus 221 i~~f~~ 226 (495)
T KOG2533|consen 221 IVVFFF 226 (495)
T ss_pred heEEEE
Confidence 665543
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.1e-09 Score=107.34 Aligned_cols=136 Identities=15% Similarity=0.060 Sum_probs=118.9
Q ss_pred CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhh
Q 014716 237 GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGC 315 (420)
Q Consensus 237 g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~ 315 (420)
..+.....+..+++.++..+|.++.|.++||+ |||.++.+++++.+++.+..+ ..+...+.+.+++.|++.++
T Consensus 114 c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~------GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~ 187 (521)
T KOG0255|consen 114 CDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF------GRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSG 187 (521)
T ss_pred eCcHhHHHHHHHHHHHHHHHHHhhheehHhhc------ccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccc
Confidence 55667778888999999999999999999998 888999999999999887777 67788899999999999999
Q ss_pred hhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 014716 316 QWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
.......+++|+++++.|+.+..+ ......++ .+++.+.+++.. + ||+.+++.....++.++.
T Consensus 188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~-~~~~~~~a~~~~--~------------Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGG-LMLPAGAAYITR--D------------WRWLFWIISIPSGLFLLL 250 (521)
T ss_pred hhHHhHhhheeecCcchhhHHHHH-HHHHHHHH-HHHHHHHHHHHh--h------------HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 66666666 466788888876 3 999999998888877665
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=102.16 Aligned_cols=172 Identities=14% Similarity=0.094 Sum_probs=135.7
Q ss_pred HHHHHHHHHhcccchhhhc----cHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHH
Q 014716 209 WLLFVAMLCGMGSGLATVN----NISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 284 (420)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~ 284 (420)
|...+..|+......++.+ ..+.+.++++.+..+++++.++......+..|+.+.+.||+ +.|.+.+++.
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf------g~R~v~i~G~ 118 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF------GCRTVMIAGG 118 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc------CchHHHHHHH
Confidence 4444555444444444333 44556667788888899999999999999999999999999 6667888899
Q ss_pred HHHHHHHHHHH-hcCchh-HHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHh
Q 014716 285 ATMSVGHIVVA-SGFPGN-LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN 362 (420)
Q Consensus 285 ~~~~~~~l~l~-~~~~~~-l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~ 362 (420)
++.++++++.. .++.+. ++...++.|+|.|..+.+...++...|. |+|+.+.|+...+..+|..++ |.+.-.+.+.
T Consensus 119 ~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~-~~l~~~l~~~ 196 (509)
T KOG2504|consen 119 LVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVF-PPLLKYLLSK 196 (509)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeH-HHHHHHHHHH
Confidence 99999998876 444444 4455777899999999888888887776 889999999999999999655 6899999999
Q ss_pred hcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 014716 363 VASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFI 400 (420)
Q Consensus 363 ~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~ 400 (420)
.| ||+++++.+.+++-.++....+++
T Consensus 197 ~G------------~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 197 YG------------WRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred hC------------cHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99 999999999988777766655543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-06 Score=85.84 Aligned_cols=149 Identities=13% Similarity=0.036 Sum_probs=96.9
Q ss_pred chhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhH-HHHHHHHHHHHHHHHHH--h--------cCchhHHHHHHHHH
Q 014716 242 AINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS-FIAITLATMSVGHIVVA--S--------GFPGNLYVGSIIVG 310 (420)
Q Consensus 242 ~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~-~~~i~~~~~~~~~l~l~--~--------~~~~~l~~~~~l~G 310 (420)
.++++-++.++.-++..|+.+++=.|..||++.++.+ =+.+++++.+++++.+. . .+..++....++.+
T Consensus 309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t 388 (493)
T PRK15462 309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG 388 (493)
T ss_pred CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 4677788999988888888888877775432212222 26777788888776553 1 12345777788889
Q ss_pred HhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHH-hhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHH
Q 014716 311 VCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIA-SPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAF 389 (420)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~ 389 (420)
+|.-...|+..+.++++.|++.+|..+|...+. ..+|.. ++..+.+...+...+++...-.....|...|...+...+
T Consensus 389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 467 (493)
T PRK15462 389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANY-LAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGAL 467 (493)
T ss_pred HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999764 357763 444444443211000000000011237777877776665
Q ss_pred HH
Q 014716 390 VG 391 (420)
Q Consensus 390 ~~ 391 (420)
+.
T Consensus 468 ~~ 469 (493)
T PRK15462 468 AC 469 (493)
T ss_pred HH
Confidence 55
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.2e-09 Score=100.57 Aligned_cols=178 Identities=17% Similarity=0.055 Sum_probs=124.9
Q ss_pred HHHHHHHhcccchhhhccHHHHHHHcCCCccchhH--------HHHHHHHHHH-HhHhhhhhhhHhHhhhcCCChhHHHH
Q 014716 211 LFVAMLCGMGSGLATVNNISQIGESLGYPTSAINS--------LVSLWSIWNF-LGRFGGGYVSDIVLHRMGWERPSFIA 281 (420)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~--------~~~~~~~~~~-ig~~~~G~lsDr~~~~~~~~r~~~~~ 281 (420)
.....|+.-.+.+....+...+.++.|+.+.+... ...+..+++. .|-.+...++|++ +|++...
T Consensus 309 t~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i------GRk~iq~ 382 (538)
T KOG0252|consen 309 TAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII------GRKYIQL 382 (538)
T ss_pred HHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh------hhHHHHH
Confidence 34444555556666777788888888876554433 2223333443 3888889999999 7888999
Q ss_pred HHHHHHHHHHHHHH-hcC-c---hhHHH-HHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHH
Q 014716 282 ITLATMSVGHIVVA-SGF-P---GNLYV-GSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRI 355 (420)
Q Consensus 282 i~~~~~~~~~l~l~-~~~-~---~~l~~-~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l 355 (420)
.+..++.+.++.++ .-+ . ..+.+ ..+.+-++.-+-.+....+-+|.||.+.||+.+|+....+-.|+ +++...
T Consensus 383 ~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GA-ivg~~~ 461 (538)
T KOG0252|consen 383 MGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGA-IVGAFG 461 (538)
T ss_pred hhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchH-HHHHHH
Confidence 99999999888877 222 1 11222 22222234444445566778999999999999999999999999 578778
Q ss_pred HHHHHH-----hhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 014716 356 IGYIYD-----NVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQ 408 (420)
Q Consensus 356 ~g~l~~-----~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (420)
++.+.+ ..+ ++++|++++++++++.+..+++ +++|++..+
T Consensus 462 F~~~t~~~yp~~~g------------~~~v~~i~~~~~~~gi~~T~l~-pEtk~~~le 506 (538)
T KOG0252|consen 462 FLYLTDHNYPPNIG------------VRNVFIILAGCMLLGILFTLLI-PETKGKSLE 506 (538)
T ss_pred hhHhhhccCCcccc------------chHHHHHHHHHHHHhHheeEEe-ecccccCHH
Confidence 888777 333 7899999999999999876655 477765443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-06 Score=82.40 Aligned_cols=188 Identities=15% Similarity=0.181 Sum_probs=132.7
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
+.+...+++....++..++...+.++-...+-+|.-+ +|++..++..+......+..+|-.+.|++..|-. +.+
T Consensus 201 ~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~-----~~~ 275 (403)
T PF03209_consen 201 WRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRL-----GKK 275 (403)
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----Cch
Confidence 4556666666666666665555555544455555544 4999999999999999999999999999877422 222
Q ss_pred HHHHHHHHHHHHHHHHH--H--hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhh
Q 014716 278 SFIAITLATMSVGHIVV--A--SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 353 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l--~--~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 353 (420)
....+++...++++.++ + ..+.+.+....+++|++.|.+....-+.++++..+++-|+..|....++.++.. ++.
T Consensus 276 ~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~G-lg~ 354 (403)
T PF03209_consen 276 RTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARG-LGT 354 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHH-HHH
Confidence 33445555555544433 2 344566888899999999999988999999999999999999999999999884 788
Q ss_pred HHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 014716 354 RIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 354 ~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
.++|.+.|....-..+ .-...|..+|.+=++..++++.+
T Consensus 355 ~~GG~~~D~~~~~~~~--~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 355 FLGGALRDLVRALFGN--SPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred HHHHHHHHHHHHhccC--CcchHHHHHHHHHHHHHHHHHHH
Confidence 8999998864311000 12234777777776666666544
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.7e-07 Score=92.29 Aligned_cols=186 Identities=15% Similarity=0.114 Sum_probs=109.1
Q ss_pred CcHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCCh
Q 014716 197 MNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 276 (420)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r 276 (420)
..+.++++.+++....+...+.........+-+......+|.+. .....+............+...|++ +|
T Consensus 309 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~---~~~~~~~~~~~~p~~~~~~~~~~~~------gR 379 (521)
T KOG0255|consen 309 ISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNI---YLNFTLSGLVELPAYFRNGLLLPEF------GR 379 (521)
T ss_pred CchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCchH---HHHHHHHHHHHhhHHHHHHHHHHHh------Cc
Confidence 34677777765433333332222211222223333333444332 2222333334555556667888888 78
Q ss_pred hHHHHHHHHHHHHHHHHHH-hcCc-h--hHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhh
Q 014716 277 PSFIAITLATMSVGHIVVA-SGFP-G--NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCS 352 (420)
Q Consensus 277 ~~~~~i~~~~~~~~~l~l~-~~~~-~--~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~ 352 (420)
+.....+..+..++++... .... . ...+...+..++.+..+.....+.+|++|+..|..+.+..+....+|+ +++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~-i~a 458 (521)
T KOG0255|consen 380 RPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGS-ILA 458 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH-HHH
Confidence 8889999999888888776 2222 2 233344444456666677779999999999999999999999999999 577
Q ss_pred hHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 014716 353 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRF 405 (420)
Q Consensus 353 ~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~ 405 (420)
|.+.-....... ...+.+.+.++.+...++..+.++++.+
T Consensus 459 p~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~~lpet~~~ 498 (521)
T KOG0255|consen 459 PLFPLLLRQMFP-------------LLGLILFGWLALLLGLLSLLLLPETKGK 498 (521)
T ss_pred HHHHHHHhhhcc-------------cchHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 766644433211 1223334555555555554455565543
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.4e-08 Score=93.69 Aligned_cols=195 Identities=13% Similarity=0.100 Sum_probs=127.9
Q ss_pred CcHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCCh
Q 014716 197 MNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 276 (420)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r 276 (420)
.+.++.+++++|.++.+++....+......+.+-..+...|++...+|....+..++..+|..++|.+.||..+ -
T Consensus 257 ~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~-----f 331 (480)
T KOG2563|consen 257 KSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKK-----F 331 (480)
T ss_pred HHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhh-----H
Confidence 46789999999999888887776555554444444444558888899999999999999999999999999832 2
Q ss_pred hHHHHHHHHHHHHH-HHHHHh-c---CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHh
Q 014716 277 PSFIAITLATMSVG-HIVVAS-G---FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVC 351 (420)
Q Consensus 277 ~~~~~i~~~~~~~~-~l~l~~-~---~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 351 (420)
|..+.+......++ +.+... . ....++....++|++.-+..|...-+-.|..-|..-|+..|+.++.+.+-+.++
T Consensus 332 k~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~ 411 (480)
T KOG2563|consen 332 KLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVIL 411 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHH
Confidence 33344444444444 222221 1 223467777788988888888888887776666677888999877776665333
Q ss_pred hhHHHHHHHHhhcCCCCCccccccccHH-HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 014716 352 SVRIIGYIYDNVASGEGNSCNGTHCFML-SFLIMASVAFVGCLVAFLLFIRTRRFY 406 (420)
Q Consensus 352 ~~~l~g~l~~~~g~~~~~~c~g~~~~~~-~f~i~~~~~~~~~~~~~~~~~~~~~~~ 406 (420)
..+.+...+..+.+ .|.. .-+.+...+.+++++..++++.+|+.+
T Consensus 412 -~~~~~~~~~~~~~~---------~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~ 457 (480)
T KOG2563|consen 412 -VFIMGILAEDLGPP---------GNTFPANIFLTVSALLGAILVAFFRPDYRRLR 457 (480)
T ss_pred -HHHHHHHhhccCCC---------CCCccchhHhHHHHHHHHHHHhhhhhhHHhHh
Confidence 56677766655421 1222 223344444555555555665555543
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-07 Score=92.08 Aligned_cols=157 Identities=11% Similarity=-0.003 Sum_probs=113.4
Q ss_pred HHHhhCHHHHHHHHHHHH--hcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 200 LQSVCTLNFWLLFVAMLC--GMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
++.++++..|...+..++ ...........+ ...+.+|+++...|......+++..++..+.+++.+|+ +.+
T Consensus 246 ~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~------~~r 318 (468)
T TIGR00788 246 RGAIQLLEIAKPLIFIFLSYANLPGASGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF------PYR 318 (468)
T ss_pred HHHHhcHHHHHHHHHHHHHHhhcCCCCceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC------CHH
Confidence 555777787764444443 111111111111 12235699999999999999988888888888887777 667
Q ss_pred HHHHHHHHHHHHHHHHHH--h---------cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhh
Q 014716 278 SFIAITLATMSVGHIVVA--S---------GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPV 346 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~--~---------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 346 (420)
..+.++.++.+++.+... . .+...+....++.+++.+..+.+...++++..|++..|+.+++.+....+
T Consensus 319 ~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~l 398 (468)
T TIGR00788 319 LLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHL 398 (468)
T ss_pred HHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHH
Confidence 778888877777664421 0 11223445567788899988999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHhhc
Q 014716 347 GSYVCSVRIIGYIYDNVA 364 (420)
Q Consensus 347 g~~~~~~~l~g~l~~~~g 364 (420)
|. .+++.++|.+.+..|
T Consensus 399 g~-~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 399 GS-SVSGFLGVLLMETIG 415 (468)
T ss_pred HH-HHHHHHHHHHHHHcC
Confidence 98 588899999998887
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.8e-08 Score=92.56 Aligned_cols=182 Identities=14% Similarity=0.052 Sum_probs=125.3
Q ss_pred cHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCcc-chhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCC
Q 014716 198 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTS-AINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWE 275 (420)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~-~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~ 275 (420)
.++++++++..|...................++....+. . ++. +.++.....++...+|..+.|.++||+++.
T Consensus 262 ~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~-~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~---- 336 (464)
T KOG3764|consen 262 PMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMF-TPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHL---- 336 (464)
T ss_pred cHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhcc-CCCcceeeeecccccchhccCchHHHHHHhcCch----
Confidence 468899999888876655554444444555666655544 5 444 788888889999999999999999999532
Q ss_pred hhHHHHHHH-HHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCC------chHHHHHHHHHHhhhH
Q 014716 276 RPSFIAITL-ATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVG------HMGTIFNTIAIASPVG 347 (420)
Q Consensus 276 r~~~~~i~~-~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g 347 (420)
| |...... +...+.+.... .++...+++..+..+++.+...+............+ .+|..+++...+..+|
T Consensus 337 ~-wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla 415 (464)
T KOG3764|consen 337 R-WLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLA 415 (464)
T ss_pred h-HHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHh
Confidence 3 4443333 33332222222 344455666666666666665555554444444332 5789999999999999
Q ss_pred HHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 348 SYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 348 ~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
. .+||.++|.++++.| |+|...+.++..++-.-+..++
T Consensus 416 ~-a~GP~~gg~iv~~iG------------F~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 416 Y-AIGPTFGGSLVEAIG------------FEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred h-hccccccchheeehh------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 8 599999999999999 9999988888888776655444
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-07 Score=93.34 Aligned_cols=170 Identities=15% Similarity=0.008 Sum_probs=110.9
Q ss_pred HHHHHHHhcccchhhhccHHHHHHHcCCCccchhHH--HHHHHHHHHHhHhhh-hhhhHhHhhhcCCChhHHHHHHHHHH
Q 014716 211 LFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSL--VSLWSIWNFLGRFGG-GYVSDIVLHRMGWERPSFIAITLATM 287 (420)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~--~~~~~~~~~ig~~~~-G~lsDr~~~~~~~~r~~~~~i~~~~~ 287 (420)
++..++............+|.++++.|+|.++.|++ .++..+..++..|+. ++.+||+||| |.++.....+.
T Consensus 6 ~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r-----~~~i~~~~~~~ 80 (390)
T TIGR02718 6 LGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRR-----RSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcc-----hhHHHHHHHHH
Confidence 334444444444556778999999999999999987 356677776666666 4467776533 22222222222
Q ss_pred HHHHHHHH---hc-C-chhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHh
Q 014716 288 SVGHIVVA---SG-F-PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN 362 (420)
Q Consensus 288 ~~~~l~l~---~~-~-~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~ 362 (420)
+.....+. .. . ...+.....+.+++....-+...++..|..+.++++...+....+..+|. ++++.+.+.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~-~~g~~~~~~l~~~ 159 (390)
T TIGR02718 81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGF-FGGGAGTLVLFGK 159 (390)
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 22222222 11 1 12233333444455555666667778888888888888888888888888 5888888899998
Q ss_pred hcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 363 VASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 363 ~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
.+ |+.+|++.+++.++..+..+.+
T Consensus 160 ~g------------w~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 160 FG------------QRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred hC------------HHHHHHHHHHHHHHHHHHHHHc
Confidence 88 9999999998887766665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.9e-08 Score=96.34 Aligned_cols=165 Identities=11% Similarity=0.071 Sum_probs=107.8
Q ss_pred hhccHHHHHH-HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCc---
Q 014716 225 TVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFP--- 299 (420)
Q Consensus 225 ~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~--- 299 (420)
+..++++|+. ..|++...++.++++.-+...+..|+.|+++||...|.+ +||+++..+.+..+++..++. .++.
T Consensus 28 ~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~G-rrrp~il~~~~~~~i~~~l~f~~p~~~~~ 106 (444)
T PRK09669 28 VMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHG-QFRPYLLWFAIPFGVVCLLTFYTPDFGAT 106 (444)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCC-CcchhHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 3445555555 559999999999999999999999999999999866554 446666666666666554433 2221
Q ss_pred ---hhHHHHHHHHHHhhhhhhhhHHHHHHHhh-CCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCcccccc
Q 014716 300 ---GNLYVGSIIVGVCYGCQWSLMPTITYEIF-GVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTH 375 (420)
Q Consensus 300 ---~~l~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~ 375 (420)
..+++..++++.++.....+..++.+|+. ++++|++..++-..+..+|.. +++.+...+....++.. ...
T Consensus 107 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~-i~~~~~~pl~~~~~~~~-----~~~ 180 (444)
T PRK09669 107 GKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGL-IVSVIALPLVDILGKGD-----EQK 180 (444)
T ss_pred hHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCc-----hhh
Confidence 12334445566677777778889999987 457788887777666666663 44444444443333100 112
Q ss_pred ccHHHHHHHHHHHHHHHHHHH
Q 014716 376 CFMLSFLIMASVAFVGCLVAF 396 (420)
Q Consensus 376 ~~~~~f~i~~~~~~~~~~~~~ 396 (420)
+|+..+.+.++++++..+++.
T Consensus 181 g~~~~~~i~~ii~~v~~~~~~ 201 (444)
T PRK09669 181 GYFYAMMVMGLLGVVLFFCCF 201 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 377777777777766655443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-07 Score=87.17 Aligned_cols=176 Identities=11% Similarity=0.004 Sum_probs=133.0
Q ss_pred HHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHH
Q 014716 213 VAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHI 292 (420)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l 292 (420)
..+++...........+|++.+.++.+..+++++-..+..+.+++.+..|++.+|+ +.|.-+.+++.++++++.
T Consensus 20 ~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~------gyk~gi~lgL~l~avg~~ 93 (422)
T COG0738 20 SLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL------GYKAGIVLGLLLYAVGAA 93 (422)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh------hhHHHHHHHHHHHHHHHH
Confidence 33333333333455567888777799999999999999999999999999999999 555668999999999998
Q ss_pred HHH----hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhc----
Q 014716 293 VVA----SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA---- 364 (420)
Q Consensus 293 ~l~----~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g---- 364 (420)
++. ..+...+..+.++.|.|.|...+..+.++..+.+++.-..-.++++..+.+|+ +.+|++++.+..+.-
T Consensus 94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa-~~gp~~g~~lils~~~~~~ 172 (422)
T COG0738 94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGA-ILGPLLGSSLILSGVALTM 172 (422)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHH-HHHHHHHHHHHHhhhhhcc
Confidence 874 23445577778899999999999999999999999888899999999999999 589999999887410
Q ss_pred CCCCCc-ccc--ccccHHHHHHHHHHHHHHHHHH
Q 014716 365 SGEGNS-CNG--THCFMLSFLIMASVAFVGCLVA 395 (420)
Q Consensus 365 ~~~~~~-c~g--~~~~~~~f~i~~~~~~~~~~~~ 395 (420)
+..... -.+ ..-++++|...+..+++..+..
T Consensus 173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~ 206 (422)
T COG0738 173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLI 206 (422)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 000000 000 1126788888777776655543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.9e-07 Score=85.07 Aligned_cols=151 Identities=14% Similarity=0.135 Sum_probs=126.4
Q ss_pred hhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 014716 225 TVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYV 304 (420)
Q Consensus 225 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~~~~~~l~~ 304 (420)
+-..++.+-++.|.|.+.+++++++..++..+..++..+++.|++ ....+..++++.+++.++=...+...++.
T Consensus 31 vgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g------~er~l~~~Llli~~G~~iR~~~~~~~L~~ 104 (395)
T COG2807 31 VGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFG------EERSLFLALLLIAAGILIRSLGGLPLLFL 104 (395)
T ss_pred hhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh------hHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 444566677788999999999999999999999999999999994 44567788888888887655445566888
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHH
Q 014716 305 GSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIM 384 (420)
Q Consensus 305 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~ 384 (420)
...+.|.|.+......|+.+.+.|| |+.+..+|+..+...+|+ .+++.+.-.+.++.++ |+....+.
T Consensus 105 gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~a-aLaa~lavpla~~~~g-----------W~~aL~~W 171 (395)
T COG2807 105 GTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGA-ALAAALAVPLAQHSGG-----------WRGALGFW 171 (395)
T ss_pred HHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHH-HHHhhhhhHHHHhhcc-----------HHHHHHHH
Confidence 8999999999999999999999999 667999999988888888 4777777777777644 99999999
Q ss_pred HHHHHHHHHH
Q 014716 385 ASVAFVGCLV 394 (420)
Q Consensus 385 ~~~~~~~~~~ 394 (420)
+..+++++++
T Consensus 172 Al~allAl~~ 181 (395)
T COG2807 172 ALLALLALLI 181 (395)
T ss_pred HHHHHHHHHH
Confidence 9999988754
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-05 Score=80.64 Aligned_cols=182 Identities=13% Similarity=0.085 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHH-Hc-CCCccc----------hhHHHHHHHHHHHHhHhhhhhhhHhHhhhcC
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGE-SL-GYPTSA----------INSLVSLWSIWNFLGRFGGGYVSDIVLHRMG 273 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-g~s~~~----------~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~ 273 (420)
+.+|.+++..++.+.+.+.+..+...+.. +. +-++.+ ..+....+++.+.+.. .+-+++.|+..
T Consensus 258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s----~~l~~l~~~~g 333 (477)
T TIGR01301 258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITS----IGMEKLCRGWG 333 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhc
Confidence 67899999999988877776666555543 33 333211 1222334444444444 44444444432
Q ss_pred CChhHHHHHHHHHHHHHHHHHH-hcC---------------------chhHHHHHHHHHHhhhhhhhhHHHHHHHhhCC-
Q 014716 274 WERPSFIAITLATMSVGHIVVA-SGF---------------------PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGV- 330 (420)
Q Consensus 274 ~~r~~~~~i~~~~~~~~~l~l~-~~~---------------------~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~- 330 (420)
+||..-.++.++.++++.... ..+ ....++...+.|+.++...++-++++++..+.
T Consensus 334 -~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~ 412 (477)
T TIGR01301 334 -AGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNL 412 (477)
T ss_pred -cchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcccc
Confidence 346666777777777666543 111 14466778889999999999999999999985
Q ss_pred -CchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014716 331 -GHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTR 403 (420)
Q Consensus 331 -~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~ 403 (420)
+..|..+|+.|....+... +..+..|.+.+..|++ -...+.+.++..+++.++++++.+|.+
T Consensus 413 ~~~~G~~mgilN~~I~lpQi-i~sl~~g~~~~~~g~~----------~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 413 GAGQGLSMGVLNLAIVIPQI-IVSLGSGPWDQLFGGG----------NLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred CCCCcchhhHHHHHHHHHHH-HHHHHHHHHHHHcCCC----------CeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4569999999999999995 5567888877766642 346788888888888888776665543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.6e-07 Score=90.13 Aligned_cols=180 Identities=13% Similarity=0.069 Sum_probs=133.8
Q ss_pred HHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHH
Q 014716 201 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 280 (420)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~ 280 (420)
+.+.+++..++++..++.......+.+.+-..+|+.|-.+..-|......-.+-+..-++.+++.+|+ |+..++
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki------GHv~v~ 439 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI------GHVNVM 439 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh------ccccee
Confidence 56667666555444444433333455566667788875555566444455556677778889999999 555567
Q ss_pred HHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHH-HHHhhhHHHHhhhHHHHH
Q 014716 281 AITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTI-AIASPVGSYVCSVRIIGY 358 (420)
Q Consensus 281 ~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~~~~~~l~g~ 358 (420)
.+++....+=++.+. ..++|.++..=++.|+..+..|....++++...|++.++++.+++ ..-..+|-. +|.+++|.
T Consensus 440 ~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g-~GslIGG~ 518 (618)
T KOG3762|consen 440 YLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKG-LGSLIGGF 518 (618)
T ss_pred eehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcc-hhhhhhhh
Confidence 777777777677666 678888888889999999999999999999999999999999998 455566663 67788999
Q ss_pred HHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 359 IYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 359 l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
+..+.| -+.+|.++++.|++.++....+.
T Consensus 519 ~v~~fg------------~~ttf~~~giAcl~~l~~~~~iq 547 (618)
T KOG3762|consen 519 VVERFG------------ARTTFRIFGIACLVTLALFISIQ 547 (618)
T ss_pred hheeeh------------hHHHHHHHHHHHHHHHHHHHHhh
Confidence 988888 67899999888888776654443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.8e-07 Score=87.17 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH----hcCchhHHHHHHHHHHhhhhhhhh
Q 014716 244 NSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA----SGFPGNLYVGSIIVGVCYGCQWSL 319 (420)
Q Consensus 244 ~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~----~~~~~~l~~~~~l~G~~~g~~~~~ 319 (420)
+..++++.++.++|..+.|+++||+ |||..+.+..++..++.++.. ......+++.+++.|+..|.....
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~------GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~ 136 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF------GRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGL 136 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHH
Confidence 4577889999999999999999999 666666666666665555433 345567899999999999999999
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHH-HHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHH
Q 014716 320 MPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIG-YIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAF 396 (420)
Q Consensus 320 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g-~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~ 396 (420)
.+.++.|.-|.+.||....+..++..+|. +++..++. .+...... |.+.+....+.+++.++...
T Consensus 137 ~pmyl~E~sP~~~RG~~g~~~~~~~~~g~-ll~~~~~l~~ilGt~~~-----------W~~l~~~~~i~~~~~l~~l~ 202 (485)
T KOG0569|consen 137 VPMYLTEISPKNLRGALGTLLQIGVVIGI-LLGQVLGLPSLLGTEDL-----------WPYLLAFPLIPALLQLALLP 202 (485)
T ss_pred HHHHHhhcChhhhccHHHHHHHHHHHHHH-HHHHHHccHHhcCCCcc-----------hHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998 46533322 23222222 77777766666666655443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.4e-08 Score=94.72 Aligned_cols=172 Identities=15% Similarity=0.180 Sum_probs=97.4
Q ss_pred hhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHH
Q 014716 203 VCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIA 281 (420)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~ 281 (420)
.|++.+|.+....++.+++........+..+++ .|++.+++|.+.+..++...+..|+.|.++||++.||+ .+..
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~----Ll~~ 79 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKH----LLWF 79 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSH----HHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHH----HHHH
Confidence 467888888777777776666667777777776 69999999999999999999999999999999986531 2222
Q ss_pred HHHHHHH-HHHHHH--HhcCchhHHHHHHHHHHhhh----hhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhH
Q 014716 282 ITLATMS-VGHIVV--ASGFPGNLYVGSIIVGVCYG----CQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 354 (420)
Q Consensus 282 i~~~~~~-~~~l~l--~~~~~~~l~~~~~l~G~~~g----~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 354 (420)
+..+... ...+.. ...-.....++.++.|+..+ ...++.=+++.+.- +..+--+|=.-+.+.+|- +.+..
T Consensus 80 i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~-ai~s~ 156 (412)
T PF01306_consen 80 IAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGF-AIASL 156 (412)
T ss_dssp HHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHH-HHHHH
Confidence 2222222 222221 11001122333333333333 33333333333322 223344444455555555 34556
Q ss_pred HHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 014716 355 IIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 355 l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
++|.+.+... +..||+..+..++..++
T Consensus 157 ~~G~L~~i~p-------------~~~fwi~s~~~~il~ll 183 (412)
T PF01306_consen 157 LAGILFNINP-------------NIIFWIASAAAIILLLL 183 (412)
T ss_dssp HHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
T ss_pred HhheeeeeCc-------------cHHHHHHHHHHHHHHHH
Confidence 7888887543 36777765554444433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.9e-07 Score=91.93 Aligned_cols=163 Identities=19% Similarity=0.231 Sum_probs=124.9
Q ss_pred hhhhccHHHHHH-HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHhcC-c-
Q 014716 223 LATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGF-P- 299 (420)
Q Consensus 223 ~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~~~-~- 299 (420)
+++..++..|+. .+|+++..+..+...+.....+..+++|+++|++- ||.+.+.++.++..+++.+++... +
T Consensus 4 YGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~l-----G~~~tIl~~~ii~~lG~~llai~a~~~ 78 (654)
T TIGR00926 4 YGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWL-----GKFKTILYLSIVYVVGHALLSFGAIPS 78 (654)
T ss_pred eecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 444455555554 45999888888888888888889999999999985 777888888888888888765221 1
Q ss_pred -------hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCc---hHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCC
Q 014716 300 -------GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGH---MGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGN 369 (420)
Q Consensus 300 -------~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~ 369 (420)
...+++..+.++|.|+.-+...+...|.|+.++ +-..+.+...+.++|+ ++++.+.+++.+..+
T Consensus 79 ~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGS-lis~~i~~~l~~~~~----- 152 (654)
T TIGR00926 79 SGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGS-LISTIITPILRGDVG----- 152 (654)
T ss_pred cccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhc-----
Confidence 125566777888999999999999999997543 6678888899999998 578888888865433
Q ss_pred cccc-ccccHHHHHHHHHHHHHHHHHHHH
Q 014716 370 SCNG-THCFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 370 ~c~g-~~~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
|.| ..||..+|.+.+++.++++++...
T Consensus 153 -~fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 153 -CFGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred -ccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 444 347999999999988888766543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=6e-07 Score=89.93 Aligned_cols=165 Identities=8% Similarity=0.040 Sum_probs=114.2
Q ss_pred hhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcC--c
Q 014716 224 ATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGF--P 299 (420)
Q Consensus 224 ~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~--~ 299 (420)
.+..++.+++.+. |+++..++.++.+.-+..++.-|+.|+++||...|.+ +||+++.++.+.+++++.++. .+. .
T Consensus 27 ~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~G-r~rp~il~g~i~~~i~~~llf~~p~~s~ 105 (460)
T PRK11462 27 NVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWG-KFRPWVLFGALPFGIVCVLAYSTPDLSM 105 (460)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCC-CcchhHhHHHHHHHHHHHHHHhCCCCCc
Confidence 3444556655555 9999999999999999999999999999999866555 556777777777777666554 221 1
Q ss_pred ----hhHHHHHHHHHHhhhhhhhhHHHHHHHhhC-CCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccc
Q 014716 300 ----GNLYVGSIIVGVCYGCQWSLMPTITYEIFG-VGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGT 374 (420)
Q Consensus 300 ----~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~ 374 (420)
..+.+..+++.+++-....+..++.+|+.+ .++|.+..++-..+..+|.. +++.+...+....|+.+ ..
T Consensus 106 ~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~-~~~~~~~plv~~~g~~~-----~~ 179 (460)
T PRK11462 106 NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM-LSTVLMMPLVNLIGGDN-----KP 179 (460)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCc-----hh
Confidence 123445556778888888889999999886 67899999999888888873 55556555555444210 11
Q ss_pred cccHHHHHHHHHHHHHHHHHH
Q 014716 375 HCFMLSFLIMASVAFVGCLVA 395 (420)
Q Consensus 375 ~~~~~~f~i~~~~~~~~~~~~ 395 (420)
.+|.....+.+++.+++..+.
T Consensus 180 ~g~~~~~~i~~ii~~i~~~i~ 200 (460)
T PRK11462 180 LGFQGGIAVLSVVAFMMLAFC 200 (460)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 236666666666555554443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4e-07 Score=87.32 Aligned_cols=105 Identities=17% Similarity=0.226 Sum_probs=85.0
Q ss_pred CCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHh----cCc----hhHHHHHHHH
Q 014716 238 YPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVAS----GFP----GNLYVGSIIV 309 (420)
Q Consensus 238 ~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~----~~~----~~l~~~~~l~ 309 (420)
+++...+.......++.++|+++.||+.||+ +||.+....++++.++.++.+. +.+ .++...+++.
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~------GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~L 154 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF------GRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLL 154 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh------cchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHh
Confidence 5566677788889999999999999999999 6667788888888887775541 122 3477889999
Q ss_pred HHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHH
Q 014716 310 GVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGS 348 (420)
Q Consensus 310 G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 348 (420)
|+|.|+=+|+..++++|.-..+.||+..+.....+..|.
T Consensus 155 GiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 155 GIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred hccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 999999999999999999999999998888755555554
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.4e-07 Score=89.87 Aligned_cols=174 Identities=16% Similarity=0.052 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHhcccchhhhccHHHHHH-HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHH
Q 014716 207 NFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 285 (420)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~ 285 (420)
...++...++..... ......++.+++ ++|.+..+.+.+.++..+...+ .+++|.++||+... +..||+.+.++.+
T Consensus 27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~-G~rRr~~l~~~~~ 103 (468)
T TIGR00788 27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLF-GYTKRWYLVLSGL 103 (468)
T ss_pred HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCC-CccchHHHHHHHH
Confidence 333444445544444 444555555665 5699999999999999988888 55599999999422 1146677777766
Q ss_pred HHH-HHHHHHHh-cCchh-HHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHH---HHHhhhHHHHhhhHHHHHH
Q 014716 286 TMS-VGHIVVAS-GFPGN-LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTI---AIASPVGSYVCSVRIIGYI 359 (420)
Q Consensus 286 ~~~-~~~l~l~~-~~~~~-l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~---~~~~~~g~~~~~~~l~g~l 359 (420)
+.. +....+.. .+... ..+..++.+++.+......-++..|..+ ++++...+.. .....+|. ++++.++|.+
T Consensus 104 l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~-~vg~~l~G~l 181 (468)
T TIGR00788 104 LGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGG-LISSLLGGPL 181 (468)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHH-HHHHHHHHHH
Confidence 652 33333332 22222 3336677888888888888899999998 5544433333 33344677 5788899999
Q ss_pred HHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 014716 360 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 360 ~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
.+..+ |+..|++.+++.++..+...+
T Consensus 182 ~~~~~------------~~~~f~~~a~l~ll~~~~~~~ 207 (468)
T TIGR00788 182 LDKTL------------TRILFLITAALLLLQLFVSNL 207 (468)
T ss_pred HHhcC------------cchHHHHHHHHHHHHHHHHHh
Confidence 98887 999999988888777443333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.2e-08 Score=96.72 Aligned_cols=168 Identities=18% Similarity=0.219 Sum_probs=123.4
Q ss_pred ccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHhcCc------
Q 014716 227 NNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFP------ 299 (420)
Q Consensus 227 ~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~~~~------ 299 (420)
.++.+++.+ .|.++...+++.....+..++.-|+.|.++||...|.+ +||+++.++.++.+++.+++....+
T Consensus 22 ~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~G-rrrp~~l~g~i~~~~~~~llf~~~p~~~~~~ 100 (428)
T PF13347_consen 22 SYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWG-RRRPWILIGAILLALSFFLLFSPPPAGLSFT 100 (428)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccccc-ccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence 344555554 49999999999999999999999999999996654444 5667777888888887777663211
Q ss_pred ---hhHHHHHHHHHHhhhhhhhhHHHHHHHhhC-CCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCcccccc
Q 014716 300 ---GNLYVGSIIVGVCYGCQWSLMPTITYEIFG-VGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTH 375 (420)
Q Consensus 300 ---~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~ 375 (420)
..+.+..+++.+++.....+..++.+|+.+ .++|....+.-+....+|. ++...+.+.+.+..++++ ..+
T Consensus 101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~-~l~~~~~~~l~~~~g~~~-----~~~ 174 (428)
T PF13347_consen 101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGS-LLASFLAPILVSWFGGGD-----TSN 174 (428)
T ss_pred hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHH-HHHHHHhhhhhhhhccCc-----cch
Confidence 124555666788888888899999999997 4689999999988888888 455667777776655311 112
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 014716 376 CFMLSFLIMASVAFVGCLVAFLLFIR 401 (420)
Q Consensus 376 ~~~~~f~i~~~~~~~~~~~~~~~~~~ 401 (420)
.|++..++.+++.+++.++.....++
T Consensus 175 ~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 175 GYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHHHHHhhhhhheeee
Confidence 48888888888888777665554444
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.3e-06 Score=86.89 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=64.7
Q ss_pred cHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHH-HHHHhHhhhhhhhHhHhhh
Q 014716 198 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSI-WNFLGRFGGGYVSDIVLHR 271 (420)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~-~~~ig~~~~G~lsDr~~~~ 271 (420)
..+++++++.+|...+..++......++..++|.|+++. |+++.+++++..+..+ +.++|.+++|+++||++.+
T Consensus 322 ~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 322 IIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence 357889999999999999998888888999999999865 9999999999888776 5689999999999999543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.9e-07 Score=90.14 Aligned_cols=147 Identities=13% Similarity=0.079 Sum_probs=91.3
Q ss_pred hhhhccHHHHHH-HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCch
Q 014716 223 LATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPG 300 (420)
Q Consensus 223 ~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~ 300 (420)
-.....++.+++ +.|++..+.|++.+...++..++.+.+|+++||++ +||+.+.++.++..++..+.. .++..
T Consensus 19 ~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g-----~~r~~~~~~~~~~~~~~~~~~~~~~~~ 93 (418)
T TIGR00889 19 GSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWL-----SAQKVYAVCHFAGALLLFFAAQVTTPA 93 (418)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 334445555554 56999999999999999999999999999999995 335566666666656555544 34455
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHh--------hCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccc
Q 014716 301 NLYVGSIIVGVCYGCQWSLMPTITYEI--------FGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCN 372 (420)
Q Consensus 301 ~l~~~~~l~G~~~g~~~~~~~~~~~~~--------~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~ 372 (420)
.+++..++.|++.+...+...++.... .....+.+.+| .+|. +++|.+.|.+ +...
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~-~ig~~l~g~l-~~~~-------- 157 (418)
T TIGR00889 94 GMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGF-IAAMWAVSLL-DIEL-------- 157 (418)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHH-HHHHHHHHHh-cccc--------
Confidence 566677777877666655554443222 11112333333 2454 4667777766 2221
Q ss_pred cccccHHHHHHHHHHHHHHHHH
Q 014716 373 GTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 373 g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
.+.+|++.+++.++.+++
T Consensus 158 ----~~~~f~~~~~~~~~~~~~ 175 (418)
T TIGR00889 158 ----SNIQLYITAGSSALLGVF 175 (418)
T ss_pred ----hhHHHHHHHHHHHHHHHH
Confidence 123566666666655544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.6e-07 Score=90.06 Aligned_cols=167 Identities=12% Similarity=0.132 Sum_probs=108.0
Q ss_pred hhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcC--
Q 014716 223 LATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGF-- 298 (420)
Q Consensus 223 ~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~-- 298 (420)
..+..+++.|+++. |+++..+|.++++..+...+.-|+.|+++||...|.+ +||+++..+.+..++++.++. .++
T Consensus 23 ~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~G-rrrp~il~g~i~~~i~~~llf~~p~~~ 101 (473)
T PRK10429 23 GIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWG-KFKPWILIGTLANSVVLFLLFSAHLFE 101 (473)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCC-CcchhHhhhhHHHHHHHHHHHcCCCCC
Confidence 33445566666665 9999999999999999999999999999998644433 446677777777777755544 221
Q ss_pred ch----hHHHHHHHHHHhhhhhhhhHHHHHHHhh-CCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCcccc
Q 014716 299 PG----NLYVGSIIVGVCYGCQWSLMPTITYEIF-GVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNG 373 (420)
Q Consensus 299 ~~----~l~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g 373 (420)
.. .+.+..++.++++.....+..++.+|+. ++++|....++......+|+. +.+.+...+.+..|..+ .
T Consensus 102 ~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~-~~~~~~~~~~~~~g~~~-----~ 175 (473)
T PRK10429 102 GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGF-VTAGFTLPFVNYVGGGD-----R 175 (473)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCc-----h
Confidence 11 2334445567778888888999999988 578899988886666666653 33334333333333100 0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHH
Q 014716 374 THCFMLSFLIMASVAFVGCLVAF 396 (420)
Q Consensus 374 ~~~~~~~f~i~~~~~~~~~~~~~ 396 (420)
...|+....+.+++.+++.++..
T Consensus 176 ~~g~~~~~~i~~~~~~~~~~~~~ 198 (473)
T PRK10429 176 GFGFQMFTLVLIAFFIVSTIITL 198 (473)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 11256666666665555544433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.9e-07 Score=88.52 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=84.6
Q ss_pred hhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchhH
Q 014716 224 ATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNL 302 (420)
Q Consensus 224 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~l 302 (420)
.+...++.++++.|+|..++|.+.++..+..+++.+++|+++||.. +++..+.+..++.++.++... ..+.+.+
T Consensus 20 ~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~-----~~~~~l~~~~l~~~~~~~~~~~~~~f~~~ 94 (400)
T PF03825_consen 20 AFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFG-----SAKRILALLSLLSALALLLLAFSSSFWWL 94 (400)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----hHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 4556688999999999999999999999999999999999999985 334555555555555554444 4455566
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhH
Q 014716 303 YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVG 347 (420)
Q Consensus 303 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 347 (420)
+...+++.+.+....+...++..+..+ +++.-||-.-+.+.+|
T Consensus 95 ~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiG 137 (400)
T PF03825_consen 95 FVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIG 137 (400)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHH
Confidence 677777788888888888888888765 3344444443333333
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-05 Score=76.09 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=110.6
Q ss_pred HHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 014716 231 QIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVG 310 (420)
Q Consensus 231 ~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~~~~~~l~~~~~l~G 310 (420)
.++++.|++..+.+.+...-...+.+..++.|.++||+ |||....+..++.+++++.-...+...+++.+++-|
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~------Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgG 132 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY------GRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGG 132 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 44467799999999999888888889999999999999 666667788888888887766777888999999999
Q ss_pred HhhhhhhhhHHHHHH-H----hhCCCchHHHHHHHH-HHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHH
Q 014716 311 VCYGCQWSLMPTITY-E----IFGVGHMGTIFNTIA-IASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIM 384 (420)
Q Consensus 311 ~~~g~~~~~~~~~~~-~----~~~~~~~g~~~g~~~-~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~ 384 (420)
++....++..-++.- | -+|.+..+...+.+. ..+.+-+ +.+.+++-.+.|..+.. -..+|...
T Consensus 133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vA-I~aGv~a~~l~~~~~~g----------~vaPF~~a 201 (354)
T PF05631_consen 133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVA-IGAGVVANVLADWFGFG----------PVAPFDAA 201 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHH-HHHhHHHHHHHHHhCCC----------CcchHHHH
Confidence 999998888777653 2 345555566666555 4454444 45566666777766520 25788888
Q ss_pred HHHHHHHHHHHH
Q 014716 385 ASVAFVGCLVAF 396 (420)
Q Consensus 385 ~~~~~~~~~~~~ 396 (420)
..+.+++.++..
T Consensus 202 ~~~l~~~~~~I~ 213 (354)
T PF05631_consen 202 IVLLAVAAVLIL 213 (354)
T ss_pred HHHHHHHHHHHH
Confidence 888777776544
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.5e-06 Score=84.15 Aligned_cols=119 Identities=14% Similarity=0.156 Sum_probs=79.2
Q ss_pred cHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHH-HHhc-C--ch--
Q 014716 228 NISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIV-VASG-F--PG-- 300 (420)
Q Consensus 228 ~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~-l~~~-~--~~-- 300 (420)
.++.|+++. |+++.++|.++++..+..++..++.|+++||.++|++ +||+++..+.+...+..++ +... . ..
T Consensus 30 ~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~G-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (448)
T PRK09848 30 FLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWG-KFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSK 108 (448)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCc-CchHHHHHHHHHHHHHHHHHHhCcCCCCcchH
Confidence 344455655 9999999999999999999999999999999977654 4454545454434333333 2211 1 11
Q ss_pred --hHHHHHHHHHHhhhhhhhhHHHHHHHhhCC-CchHHHHHHHHHHhhhH
Q 014716 301 --NLYVGSIIVGVCYGCQWSLMPTITYEIFGV-GHMGTIFNTIAIASPVG 347 (420)
Q Consensus 301 --~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 347 (420)
..+....+.+++++...++..++..++... ++|....++-..+..++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~ 158 (448)
T PRK09848 109 VVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLT 158 (448)
T ss_pred HHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 133445667888888888888887776654 56777766655544443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.4e-06 Score=77.43 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=94.7
Q ss_pred hcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH--
Q 014716 218 GMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-- 295 (420)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-- 295 (420)
..+..+.+..+-|++-+.+|+|+++...+...-.++..+| +..|.+.|++ +.+..+.++.+...++...+.
T Consensus 14 ~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~------gp~~~l~iG~~~~~~GY~~~~l~ 86 (250)
T PF06813_consen 14 CSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF------GPWVVLLIGAVLGFVGYGLLWLA 86 (250)
T ss_pred hcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc------chHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777888888888999999999999999998875 8889999999 666778888888888776543
Q ss_pred hcC-----c-hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHH
Q 014716 296 SGF-----P-GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIY 360 (420)
Q Consensus 296 ~~~-----~-~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~ 360 (420)
... + +.+.+..++.|.+.............+.|| ++||++.|+.-....+++.+++. +...++
T Consensus 87 ~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~-i~~~~f 155 (250)
T PF06813_consen 87 VSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQ-IYSAFF 155 (250)
T ss_pred HhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHH-HHHHHc
Confidence 111 1 223333344444444444555566668998 68999999998888888766653 443333
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.5e-09 Score=108.30 Aligned_cols=138 Identities=20% Similarity=0.262 Sum_probs=107.6
Q ss_pred chhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hc---CchhHHHHHHHHHHhhhhhh
Q 014716 242 AINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SG---FPGNLYVGSIIVGVCYGCQW 317 (420)
Q Consensus 242 ~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~---~~~~l~~~~~l~G~~~g~~~ 317 (420)
..++..+...++..+|.++.|+++||+ |||+.+.++..+..++.++.. .+ +...+.+++++.|++.|+..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~------GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~ 120 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRY------GRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAY 120 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 457788999999999999999999999 666778888888888888776 44 56778899999999999999
Q ss_pred hhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHH
Q 014716 318 SLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 395 (420)
Q Consensus 318 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~ 395 (420)
+..+.++.|..|++.||...++.+.+..+|. +++..+ +....... +.+.||..+++.++.+++.++..
T Consensus 121 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~-~~~~~~-~~~~~~~~--------~~~~Wr~~~~~~~~~~l~~~~~~ 188 (451)
T PF00083_consen 121 VVSPIYISEIAPPKHRGFLSSLFQLFWALGI-LLASLI-GYIVSYYS--------DNWGWRILLIFGAIPSLLVLLLR 188 (451)
T ss_pred ccccccccccccccccccccccccccccccc-cccccc-cccccccc--------ccccccccccccccccccccccc
Confidence 9999999999999999999999998888887 354333 22221111 01128888887777766554443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.9e-06 Score=78.85 Aligned_cols=134 Identities=10% Similarity=0.117 Sum_probs=98.9
Q ss_pred hhccHHHHH-HHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchhH
Q 014716 225 TVNNISQIG-ESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNL 302 (420)
Q Consensus 225 ~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~l 302 (420)
+.+..+.+. +.+|+++.++|-+.+..++.+.+....-....||... ..+-.+...+.++.-..+++. ...+..+
T Consensus 280 ~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~----~~~a~l~~~l~~~vP~~llls~~~~~~~l 355 (451)
T KOG2615|consen 280 LENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKG----NIKAVLLFSLLLIVPAFLLLSLARTPVVL 355 (451)
T ss_pred HHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhcccccccccc----chhhHHHHHHHHHHHHHHHHhccccchhh
Confidence 444444443 3459999999999998888888888777777777631 122333333333333444444 4556678
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhh
Q 014716 303 YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV 363 (420)
Q Consensus 303 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~ 363 (420)
+....+..++.....+....++....|..+||+..|+....+.++- ++||.+.|.+....
T Consensus 356 ~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaR-aiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 356 YLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALAR-AIGPLVSGVIFSWS 415 (451)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHH-HhhhhhhheeEEEe
Confidence 8889999999888888899999999999999999999999999999 58999998877543
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.8e-06 Score=81.91 Aligned_cols=187 Identities=9% Similarity=0.023 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHhcccchhhhccHHHHHHH--cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHH
Q 014716 207 NFWLLFVAMLCGMGSGLATVNNISQIGES--LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 284 (420)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~ 284 (420)
..|+..+..++.......+....-.|.++ .+-+.+..|+.++..+++..++.+..|+.+.|.++ .|+.++.+.
T Consensus 35 si~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~-----~k~Pli~s~ 109 (488)
T KOG2325|consen 35 SIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGS-----VKKPLIVSF 109 (488)
T ss_pred hHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCC-----cccCHHHHH
Confidence 45666666666655555555555667776 57778888999999999999999999999888742 256688899
Q ss_pred HHHHHHHHHHH-----hc-CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHH
Q 014716 285 ATMSVGHIVVA-----SG-FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGY 358 (420)
Q Consensus 285 ~~~~~~~l~l~-----~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~ 358 (420)
+++++++++.. .. ....+++++++.|+|.|.. +..-+++++.--.++|-++.+..+.+..+|. ++||.+...
T Consensus 110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~-ilGp~~q~~ 187 (488)
T KOG2325|consen 110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGI-ILGPTIQLA 187 (488)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHH-HHhHHHHHH
Confidence 99999988763 12 2245778899999987764 5778888887777888888888877777777 476644433
Q ss_pred HHHhhcCCCCCcc--ccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 014716 359 IYDNVASGEGNSC--NGTHCFMLSFLIMASVAFVGCLVAFLLFIR 401 (420)
Q Consensus 359 l~~~~g~~~~~~c--~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 401 (420)
..-.+.++-..- .-.|=|..+=|+.+.++++.+++.....++
T Consensus 188 -f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 188 -FTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred -HhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 222332110000 122337778888888888888776655443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.8e-06 Score=79.85 Aligned_cols=168 Identities=10% Similarity=0.086 Sum_probs=119.9
Q ss_pred hhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcC--
Q 014716 223 LATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGF-- 298 (420)
Q Consensus 223 ~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~-- 298 (420)
.....++.+++.+. |+++..+|.+..+.-+..++.-|+.|.++||...|++ +||+++..+.+..++...++. .++
T Consensus 29 ~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~G-rfRP~lL~g~ip~~i~~~l~F~~p~~~ 107 (467)
T COG2211 29 GIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWG-RFRPWLLWGAIPFAIVAVLLFITPDFS 107 (467)
T ss_pred HHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccc-cccHHHHHHhHHHHHHHHHHHcCCCcc
Confidence 33455677777766 9999999999999999999999999999999876665 556666666666555555443 332
Q ss_pred --c--hhHHHHHHHHHHhhhhhhhhHHHHHHHhhC-CCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCcccc
Q 014716 299 --P--GNLYVGSIIVGVCYGCQWSLMPTITYEIFG-VGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNG 373 (420)
Q Consensus 299 --~--~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g 373 (420)
. ...++...+.++++....-+..++.+++.. +++|.+..+.-..+..+|.. +...+.+.+....++++ .
T Consensus 108 ~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~-l~~~~~~plv~~~g~~~-----~ 181 (467)
T COG2211 108 MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGL-LVAVLFPPLVKLFGGGD-----K 181 (467)
T ss_pred cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCc-----c
Confidence 1 224566777889999888888899998875 57799999998888888874 44567777776665321 1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHH
Q 014716 374 THCFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 374 ~~~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
.++|+.+..+++++.++..++++.
T Consensus 182 ~~g~~~~~~~~~vi~~i~~l~~~~ 205 (467)
T COG2211 182 ALGYQGTALVLGVIGVILLLFCFF 205 (467)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 234666666666666665555443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-05 Score=76.99 Aligned_cols=131 Identities=17% Similarity=0.144 Sum_probs=97.2
Q ss_pred HHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-----hcC-------c
Q 014716 232 IGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-----SGF-------P 299 (420)
Q Consensus 232 ~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-----~~~-------~ 299 (420)
+..|++.+....+.++++..+... .|+..|+.||+...-....|.+.+..+.++.+.+..+.. ... +
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 345778887778877777766655 599999999998523333566677777766666544321 111 1
Q ss_pred h-----hHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhc
Q 014716 300 G-----NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 364 (420)
Q Consensus 300 ~-----~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g 364 (420)
. ...+...++|+|.+...+...+++.|..++++|+++.+++.....+|. +.+..+.|.+.|.+.
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~-iv~ai~~g~lL~~~s 153 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGI-IVSAIVFGRLLDPFS 153 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHH-HHHHHHHHHHccccC
Confidence 1 134556678999999999999999999999999999999988888888 578889999888655
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-05 Score=74.65 Aligned_cols=148 Identities=14% Similarity=0.072 Sum_probs=110.6
Q ss_pred HHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchhHHHHH
Q 014716 229 ISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGS 306 (420)
Q Consensus 229 ~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~ 306 (420)
+...++.. |.+..+..++......+..+|...+|.++|++ +|++-..+...+.++...+-. .++..++.+..
T Consensus 100 i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~------grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~ 173 (528)
T KOG0253|consen 100 ILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI------GRRKGFNLTFLVTGVFGVISGASPNFASLCVFR 173 (528)
T ss_pred HHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh------hcchhhhhhHHHHHHHHHhhcCCCCeehhhHHH
Confidence 33334444 77888888999999999999999999999999 555556666666666655544 56667788889
Q ss_pred HHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHH
Q 014716 307 IIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMAS 386 (420)
Q Consensus 307 ~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~ 386 (420)
.+.|+|.|+ .+...++-.|..|..+|+.-.=+. ....+|. ++...+.-....+.| ||+-+.....
T Consensus 174 ~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~-v~ea~law~vm~~~g------------wr~~l~~~~~ 238 (528)
T KOG0253|consen 174 ALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQ-VFEALLAWGVMSNFG------------WRYLLFTSST 238 (528)
T ss_pred HHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHH-HHHHHHHHHHHHhhh------------HHHHHHHHHh
Confidence 999999999 788888889988888887765555 7777787 566666666667777 9988877776
Q ss_pred HHHHHHHHHHH
Q 014716 387 VAFVGCLVAFL 397 (420)
Q Consensus 387 ~~~~~~~~~~~ 397 (420)
...+.+.+..+
T Consensus 239 pl~~~a~f~~w 249 (528)
T KOG0253|consen 239 PLMFAARFLVW 249 (528)
T ss_pred HHHHHHHHHhh
Confidence 55555555444
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.8e-06 Score=83.10 Aligned_cols=165 Identities=14% Similarity=0.045 Sum_probs=99.6
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHH---Hc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCC-
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE---SL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW- 274 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~- 274 (420)
+...|++.+.+..+......+..-.+.+|.|.+.+ +. |++..+..++..+...+..+|.+++|.++||+.+.++-
T Consensus 238 ~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~ 317 (493)
T KOG1330|consen 238 KVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNS 317 (493)
T ss_pred HHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccc
Confidence 44445455544444444444444456667775554 33 77777777788888999999999999999998775421
Q ss_pred ChhHHHHHH---HHHHHHHHHHHH-hcCchh--HHHHHHHHHHhh-hhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhH
Q 014716 275 ERPSFIAIT---LATMSVGHIVVA-SGFPGN--LYVGSIIVGVCY-GCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVG 347 (420)
Q Consensus 275 ~r~~~~~i~---~~~~~~~~l~l~-~~~~~~--l~~~~~l~G~~~-g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 347 (420)
+|...--+. ....++.++.+. ...... ..+.++++|... -..++.+.-+..+++|++.|.+++++..+..-+.
T Consensus 318 ~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~f 397 (493)
T KOG1330|consen 318 GTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIF 397 (493)
T ss_pred cchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHh
Confidence 222111111 111222222222 111122 334444455433 2456777888899999999999999996555554
Q ss_pred HHHhhhHHHHHHHHhhc
Q 014716 348 SYVCSVRIIGYIYDNVA 364 (420)
Q Consensus 348 ~~~~~~~l~g~l~~~~g 364 (420)
+-.-+|.+.|.+.|+.-
T Consensus 398 gd~~~p~ivGilsd~l~ 414 (493)
T KOG1330|consen 398 GDAASPYIVGILSDKLR 414 (493)
T ss_pred ccCCCcceehhHHHHhh
Confidence 43566779999999764
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00012 Score=72.73 Aligned_cols=158 Identities=20% Similarity=0.184 Sum_probs=110.2
Q ss_pred HHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hc----CchhHH
Q 014716 229 ISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SG----FPGNLY 303 (420)
Q Consensus 229 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~----~~~~l~ 303 (420)
.+++.+++|.++.+...+.++..+...+ .++.|.++|-+--+ +.+||+.+.++.++.+++.+.++ .. +.....
T Consensus 13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~-G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~ 90 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIF-GYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAV 90 (433)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhccccccc-CCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHH
Confidence 3455556799998888877777775554 77889999987321 22567777777777765555544 11 223345
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHhhC--CCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHH
Q 014716 304 VGSIIVGVCYGCQWSLMPTITYEIFG--VGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSF 381 (420)
Q Consensus 304 ~~~~l~G~~~g~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f 381 (420)
+..++..+|....-.+.-+.+.|... ++.+|...+.......+|+ +++..+.|.+.+..+ ++..|
T Consensus 91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~-lv~~~l~G~l~~~~~------------~~~~f 157 (433)
T PF03092_consen 91 VLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGS-LVGSLLSGPLLDSFG------------PQGVF 157 (433)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHH-HHHHHhhhhhhhcCC------------CeEEe
Confidence 55666677777777777788887763 2337788888888888888 578889999998876 77888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014716 382 LIMASVAFVGCLVAFLLFIR 401 (420)
Q Consensus 382 ~i~~~~~~~~~~~~~~~~~~ 401 (420)
.+.+.+..+..+..+.+..+
T Consensus 158 ~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 158 LISAALPLLMLIVALFLLEE 177 (433)
T ss_pred hHHHHHHHHHHHHHHHhhhh
Confidence 88887777776665555543
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0035 Score=62.40 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=100.0
Q ss_pred cHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhh-hhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHh-cCchhHHH
Q 014716 228 NISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGG-YVSDIVLHRMGWERPSFIAITLATMSVGHIVVAS-GFPGNLYV 304 (420)
Q Consensus 228 ~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G-~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~-~~~~~l~~ 304 (420)
.++.+++.. |+++++.+.+.+..+....++..+.. .+.-.+ +.+..+.+++....+..+..+. +..+..+.
T Consensus 263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l------~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~ 336 (463)
T KOG2816|consen 263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSIL------GEKRLISLGLLSEFLQLLLFAFATETWMMFA 336 (463)
T ss_pred EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhHhhHHHHHHHHHHHHHHHhccchhhhH
Confidence 345555544 99999999999999999999888877 555555 4445788888888888888774 44444444
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhc
Q 014716 305 GSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 364 (420)
Q Consensus 305 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g 364 (420)
..+ .....+...+...+.++...+++++|++.++......+.+ +++|.+.+.++..+.
T Consensus 337 ~~v-~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~-~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 337 AGV-VVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSG-VVSPALYGNIFALTL 394 (463)
T ss_pred HHH-HHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhh-hhhHHHHHHHHHHHH
Confidence 444 4455677788899999999999999999999999999998 588899998886654
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0011 Score=61.07 Aligned_cols=148 Identities=16% Similarity=0.204 Sum_probs=101.5
Q ss_pred hhccHHHHHHHcCCCc--cchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcC--c
Q 014716 225 TVNNISQIGESLGYPT--SAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGF--P 299 (420)
Q Consensus 225 ~~~~~~~~~~~~g~s~--~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~--~ 299 (420)
.....+.+..+.+.+. ...++..+...+...++.++.|.++||+ +||..+..+.....++.+... ..+ .
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY------GRRKVLIIGLLLFLLGTLLLALAPNVGL 94 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc------cchHHHHHHHHHHHHHHHHHHhCccchH
Confidence 4445666666665554 4678888899999999999999999999 444445444443344433333 222 3
Q ss_pred hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCC-CchHHHHHHHHH-HhhhHHHHhhhHHHHHHHHhhcCCCCCcccccccc
Q 014716 300 GNLYVGSIIVGVCYGCQWSLMPTITYEIFGV-GHMGTIFNTIAI-ASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCF 377 (420)
Q Consensus 300 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~-~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~ 377 (420)
..+.+.....|++.+...+...+++.+.++. +.++...+.... ...+|. ++++.+.+.+.+. . ...|
T Consensus 95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~---------~~~~ 163 (338)
T COG0477 95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGL-ALGPLLAGLLLGA-L---------LWGW 163 (338)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-H---------hcch
Confidence 4566666668999998899999999999997 678888888877 466666 5777777777665 2 1128
Q ss_pred HHHHHHHHHHHH
Q 014716 378 MLSFLIMASVAF 389 (420)
Q Consensus 378 ~~~f~i~~~~~~ 389 (420)
+..|.+......
T Consensus 164 ~~~~~~~~~~~~ 175 (338)
T COG0477 164 RAAFLLAALLGL 175 (338)
T ss_pred HHHHHHHHHHHH
Confidence 876655554443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00011 Score=72.36 Aligned_cols=139 Identities=12% Similarity=0.055 Sum_probs=85.9
Q ss_pred HHHhhCHH--HHHHHHHHHHhcccchhhhccHHHHHHHcCCC-ccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCCh
Q 014716 200 LQSVCTLN--FWLLFVAMLCGMGSGLATVNNISQIGESLGYP-TSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 276 (420)
Q Consensus 200 ~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r 276 (420)
.+..+|+. .|-+|.+.. ....+-+.++.-.+.++..-+ ..--|..-++..+.+.+..+..|++-.++ .+
T Consensus 256 ~~~y~n~~vl~WSlWwa~a--~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w------~~ 327 (511)
T TIGR00806 256 VTIYRNPQLLLWSLWWVFN--SAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRW------AR 327 (511)
T ss_pred HHHhcCcchhhhhHHHHHH--hhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCc------hh
Confidence 44455543 344444332 222222333444444444211 12345566677788888889999986555 22
Q ss_pred --hHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhh
Q 014716 277 --PSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPV 346 (420)
Q Consensus 277 --~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 346 (420)
...+.+..++.+...+++. ..+.+..+++.++++..+....++...-+++....+.+|...|+.+....+
T Consensus 328 ~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~ 400 (511)
T TIGR00806 328 WSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATA 400 (511)
T ss_pred hHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHH
Confidence 2344444444444444455 556677889999999999999899999999988888889999988654443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00013 Score=72.60 Aligned_cols=130 Identities=15% Similarity=0.168 Sum_probs=98.7
Q ss_pred HHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH--hhhhhhhhHHHHHHHhh
Q 014716 251 SIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGV--CYGCQWSLMPTITYEIF 328 (420)
Q Consensus 251 ~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~~~~~~l~~~~~l~G~--~~g~~~~~~~~~~~~~~ 328 (420)
.+...+..+..|.++||+ +||..+...+....+..+.+.... +++++ +.++ +++..++...++++|..
T Consensus 72 ~~~~~i~s~~iG~lSD~~------grk~~L~~~~~~~~l~~~~~~~~~-~~~~~---~~~l~g~~~~~~s~~~a~vadis 141 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRY------GRKVVLLLPLFGTILPALCLLFQG-YWFFL---LLGLSGGFSAIFSVGFAYVADIS 141 (463)
T ss_pred HHHHHHHHhhhHHhhhhh------hhhhhHHHHHHHHHHhHHHHHHHH-HHHhh---hcccccchhhhhhhhhhheeecc
Confidence 677888899999999999 666777777766666655554333 22222 3332 45566778889999999
Q ss_pred CCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014716 329 GVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTR 403 (420)
Q Consensus 329 ~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~ 403 (420)
..+.|...+|+.+.....+. ..+|.+.+.+....+ +..+|.+.++..+++.+-.....+++.
T Consensus 142 ~~~~R~~~~gll~~~~~~~~-~~~p~~~~~~~~~~~------------~a~~f~ia~~~~~~~~~y~~~~l~Esl 203 (463)
T KOG2816|consen 142 SEEERSSSIGLLSGTFGAGL-VIGPALGGYLVKFLG------------IALVFLIAAASGILSLLYMLLFLPESL 203 (463)
T ss_pred chhHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHhcC------------chHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999998888887 578999999998877 888999998888888776665554443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.022 Score=56.12 Aligned_cols=142 Identities=12% Similarity=-0.007 Sum_probs=97.2
Q ss_pred cchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCCh-hHHHHHHHHHHHHHHHHHH-h----c------CchhHHHHHHH
Q 014716 241 SAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER-PSFIAITLATMSVGHIVVA-S----G------FPGNLYVGSII 308 (420)
Q Consensus 241 ~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r-~~~~~i~~~~~~~~~l~l~-~----~------~~~~l~~~~~l 308 (420)
-...++-++.++.-.+..|+..++--|.+++++.++ +.=+.+++.+++.+.+++. . . +.++++...++
T Consensus 324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l 403 (498)
T COG3104 324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL 403 (498)
T ss_pred cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence 345667788888888888888888888766543333 2234566666666666543 1 1 22457777888
Q ss_pred HHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHH------HHHhhcCCCCCccccccccHHHHH
Q 014716 309 VGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGY------IYDNVASGEGNSCNGTHCFMLSFL 382 (420)
Q Consensus 309 ~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~------l~~~~g~~~~~~c~g~~~~~~~f~ 382 (420)
.++|.=...++..+++....|+...+..++...+....|.. ++..+.+. .++... ....|+
T Consensus 404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~-l~g~va~~~~~~~~~~~~~~------------~~~~F~ 470 (498)
T COG3104 404 QSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQT-LGGQVAGLTAVTDPAYTAFI------------EGRVFG 470 (498)
T ss_pred HHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-hhceecccccccchhhhhhh------------hhhhHH
Confidence 99999999999999999999998899999999888888874 55555552 222222 446677
Q ss_pred HHHHHHHHHHHHH
Q 014716 383 IMASVAFVGCLVA 395 (420)
Q Consensus 383 i~~~~~~~~~~~~ 395 (420)
.+++..++..++.
T Consensus 471 ~~g~v~i~~~~~~ 483 (498)
T COG3104 471 TIGVVAIVIGILL 483 (498)
T ss_pred HHHHHHHHHHHHH
Confidence 7766665555443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.3e-05 Score=54.43 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=47.7
Q ss_pred HHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhh
Q 014716 215 MLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLH 270 (420)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~ 270 (420)
+++..++.......+|.+.++.|+|+.++|.+.++..+...++.+++|+++||+++
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~ 64 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGK 64 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 34444444556778889999999999999999999999999999999999999954
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.4e-05 Score=69.82 Aligned_cols=153 Identities=16% Similarity=0.156 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHH---HHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQ---IGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAI 282 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i 282 (420)
.+|..+.+++++++++++.+..--.. +-.+.+.+..+..++.+.++.-+++-..++|++.||.- +.|+-..+
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~f-----gir~gtii 115 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRF-----GIRLGTII 115 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhh-----hhhHHHHH
Confidence 36777777888888877765442221 11123455567778889999999999999999999862 66666777
Q ss_pred HHHHHHHHHHHHHh----cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHH
Q 014716 283 TLATMSVGHIVVAS----GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGY 358 (420)
Q Consensus 283 ~~~~~~~~~l~l~~----~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~ 358 (420)
.+.+..++++.++. ...+.+...++++|+|.-.....-+.++...|.-|+.+.++|+......+|+ ..+-.+.++
T Consensus 116 ~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gs-tvNf~lm~~ 194 (459)
T KOG4686|consen 116 LCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGS-TVNFLLMPF 194 (459)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhc-eeeeeecHH
Confidence 77778888888763 3346678889999998777666777888889999999999999999999999 478889999
Q ss_pred HHHhhc
Q 014716 359 IYDNVA 364 (420)
Q Consensus 359 l~~~~g 364 (420)
++|..+
T Consensus 195 ly~~~~ 200 (459)
T KOG4686|consen 195 LYDTMG 200 (459)
T ss_pred HHHHHH
Confidence 998766
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.6e-06 Score=83.53 Aligned_cols=168 Identities=14% Similarity=0.049 Sum_probs=0.0
Q ss_pred CcHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHH-HHHHhHhhhhhhhHhHhhhcCC
Q 014716 197 MNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSI-WNFLGRFGGGYVSDIVLHRMGW 274 (420)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~-~~~ig~~~~G~lsDr~~~~~~~ 274 (420)
...+++++|+.|....++..+......++.+.+|.|+|.+ +.++.+++++.....+ +.++|.+++|++..|+.-+.+.
T Consensus 296 ~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~ 375 (539)
T PF03137_consen 296 KALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARG 375 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHH
Confidence 3568899999999888888888888888999999999976 9999999998876666 6778999999999988433221
Q ss_pred ChhHHHHHHHHHHHH--HHHHHHh---------cCc-------------------------------------hh---HH
Q 014716 275 ERPSFIAITLATMSV--GHIVVAS---------GFP-------------------------------------GN---LY 303 (420)
Q Consensus 275 ~r~~~~~i~~~~~~~--~~l~l~~---------~~~-------------------------------------~~---l~ 303 (420)
--+..+....+..+. ..+++.. ..+ .. +.
T Consensus 376 ~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl 455 (539)
T PF03137_consen 376 AAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFL 455 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHH
Confidence 112222222221111 1111100 000 00 11
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhc
Q 014716 304 VGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 364 (420)
Q Consensus 304 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g 364 (420)
+..++.-+..+....+...++-..+++++|+.+.|+..+...+-+.+-+|+++|.+.|+.-
T Consensus 456 ~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~tC 516 (539)
T PF03137_consen 456 ILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDSTC 516 (539)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhhh
Confidence 2222223344444455556667888999999999999766666555899999999999754
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.011 Score=58.80 Aligned_cols=120 Identities=13% Similarity=0.102 Sum_probs=72.4
Q ss_pred CCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHH---HHh--------cCchhHHHHH
Q 014716 238 YPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIV---VAS--------GFPGNLYVGS 306 (420)
Q Consensus 238 ~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~---l~~--------~~~~~l~~~~ 306 (420)
+++...+....+.++ +.+++..+-.++.++.. -|.++..+.++.++..+. +.. .+......-.
T Consensus 252 fs~~f~~~~~~vg~~----~~l~g~~~y~~~~~~~~--~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~ 325 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSI----ASLLGILLYRKYFSNWS--WRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDT 325 (433)
T ss_pred cCHHHHHHHHHHHHH----HHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhH
Confidence 555545544444444 44444455556655543 344444554444444332 110 1111123334
Q ss_pred HHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhc
Q 014716 307 IIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 364 (420)
Q Consensus 307 ~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g 364 (420)
++..+..+..+-+...+++++.|+..-|+.++++....++|. .++..++..+.+..+
T Consensus 326 ~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~-~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 326 ILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGS-SVSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcC
Confidence 555666666666777889999999999999999988888888 477777777777666
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0034 Score=60.81 Aligned_cols=149 Identities=14% Similarity=0.126 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhcccch-hhhcc--HHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHH
Q 014716 206 LNFWLLFVAMLCGMGSGL-ATVNN--ISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIA 281 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~ 281 (420)
++-|..++.+.+...+.. -.+.+ +..+.+++ | +.+.+.+...++.+.++...+.+-|+.||+ |-|....
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~------GLR~a~l 113 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF------GLRTALL 113 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc------chHHHHH
Confidence 455665555544433331 12222 22344444 6 666777888899999999999999999999 6677788
Q ss_pred HHHHHHHHHHHHHH-hcCc---hhHH-----HHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhh
Q 014716 282 ITLATMSVGHIVVA-SGFP---GNLY-----VGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCS 352 (420)
Q Consensus 282 i~~~~~~~~~l~l~-~~~~---~~l~-----~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~ 352 (420)
++..+.+++..+=. ...+ ..+. .+-.+.+...-....+-.-+..-+||+++|+++..+..+++.+|. .++
T Consensus 114 lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGv-avg 192 (480)
T KOG2563|consen 114 LGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGV-AVG 192 (480)
T ss_pred HHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHH-HHH
Confidence 88888888877632 2111 2222 333344444434444444566678999999999999988888888 466
Q ss_pred hHHHHHHHHh
Q 014716 353 VRIIGYIYDN 362 (420)
Q Consensus 353 ~~l~g~l~~~ 362 (420)
-++...+..+
T Consensus 193 ~llppilV~~ 202 (480)
T KOG2563|consen 193 FLLPPILVPS 202 (480)
T ss_pred hhccceecCC
Confidence 5555555443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.011 Score=57.55 Aligned_cols=144 Identities=9% Similarity=0.021 Sum_probs=86.8
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc---CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCC
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL---GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWE 275 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~ 275 (420)
.++..+++..+.-.+...+...+..-+.++...+.++. +-...--|..-+...+.+.++.+..|++..++.+. +
T Consensus 240 ~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~---~ 316 (412)
T PF01770_consen 240 FKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW---G 316 (412)
T ss_pred HHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH---H
Confidence 45555666543332323333333333444444455554 22233346667788888888999999986555321 1
Q ss_pred hhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhh
Q 014716 276 RPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPV 346 (420)
Q Consensus 276 r~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 346 (420)
...+.+..++.+...+++. ..+.+..+++.++++..+....+....-++.....+..|...|+.+....+
T Consensus 317 -~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~ 387 (412)
T PF01770_consen 317 -ELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALV 387 (412)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHH
Confidence 2333344444444555555 455666788888888888877788888888888888888888887554433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0082 Score=60.26 Aligned_cols=143 Identities=17% Similarity=0.053 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHhcCc--hh-HHHHHHHHHHhhhhhhhhH
Q 014716 244 NSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFP--GN-LYVGSIIVGVCYGCQWSLM 320 (420)
Q Consensus 244 ~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~~~~--~~-l~~~~~l~G~~~g~~~~~~ 320 (420)
+...++..+...+..|+.|.++|+-+ .||+++.+...+..++...+...++ +. ..+..++.-++++......
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~~-----~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfy 147 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYGG-----RRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFY 147 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccc-----cchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888899999999999875 4455666666665555555543222 22 2333334446778888889
Q ss_pred HHHHHHhhCCCch--------------------------HHHHHHHHHHhhhHHHHhhhHHHHHHH-HhhcCCCCCcccc
Q 014716 321 PTITYEIFGVGHM--------------------------GTIFNTIAIASPVGSYVCSVRIIGYIY-DNVASGEGNSCNG 373 (420)
Q Consensus 321 ~~~~~~~~~~~~~--------------------------g~~~g~~~~~~~~g~~~~~~~l~g~l~-~~~g~~~~~~c~g 373 (420)
+++.+++.+++.+ ++..|.-...+.+|+. +. ++..... ...++. -.+
T Consensus 148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~-v~-l~i~l~~~~~~~~~----~~~ 221 (477)
T PF11700_consen 148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGL-VA-LLISLLLVISPGST----ASN 221 (477)
T ss_pred HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHH-HH-HHHHHHHHHcCCCc----ccc
Confidence 9999999998888 8888888777778874 32 3333322 222210 112
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHH
Q 014716 374 THCFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 374 ~~~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
....|.++.+.++..++..+...+
T Consensus 222 ~~~~r~~~~~~a~ww~vfsiP~~~ 245 (477)
T PF11700_consen 222 TWAIRVAFLIVALWWLVFSIPLFL 245 (477)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHH
Confidence 334678888777776655444333
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.011 Score=49.65 Aligned_cols=97 Identities=7% Similarity=-0.085 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhHHHHHH
Q 014716 246 LVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITY 325 (420)
Q Consensus 246 ~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~ 325 (420)
-.++......+..++.+.+.+++ +.|+.+.++.+...+-.......+...++.+.++.|++.+..|.....++.
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~l------g~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt 115 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKL------GPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLT 115 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHH
Confidence 34455555666677778888898 677888888888777666655566677889999999999999999999999
Q ss_pred HhhCCCchHHHHHHHHHHhhhHH
Q 014716 326 EIFGVGHMGTIFNTIAIASPVGS 348 (420)
Q Consensus 326 ~~~~~~~~g~~~g~~~~~~~~g~ 348 (420)
+...++++++..|+.-.....+.
T Consensus 116 ~~s~~~~~~~~~~ifw~i~~~s~ 138 (156)
T PF05978_consen 116 SYSTEETIGRNTGIFWAIFQSSL 138 (156)
T ss_pred HcCCHHHHhhHHHHHHHHHHHHH
Confidence 98888888888887754444444
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.13 Score=50.88 Aligned_cols=145 Identities=13% Similarity=0.067 Sum_probs=87.5
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHH---HcCCCc-cchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCC
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE---SLGYPT-SAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWE 275 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~-~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~ 275 (420)
.+++++++...+...++.............|.-.. ..+.+. ...+......+++..++....+.+++|..+ .+
T Consensus 234 ~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~---fg 310 (461)
T KOG3098|consen 234 FKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRG---FG 310 (461)
T ss_pred HHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhh---cc
Confidence 55666666665555555443332333333343332 222222 223334445555666666667777777632 27
Q ss_pred hhHHHHHHHHHHHHHHHHHH--hc-C----------------chhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHH
Q 014716 276 RPSFIAITLATMSVGHIVVA--SG-F----------------PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTI 336 (420)
Q Consensus 276 r~~~~~i~~~~~~~~~l~l~--~~-~----------------~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~ 336 (420)
|+..+.++..+..+++++.. .+ + .....+..++.|++-+...+....++...+ ++++..+
T Consensus 311 ~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~ 389 (461)
T KOG3098|consen 311 RKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQA 389 (461)
T ss_pred cCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHH
Confidence 77777777766666655532 11 0 112456678889999999999999999999 5888888
Q ss_pred HHHHHHHhhhHH
Q 014716 337 FNTIAIASPVGS 348 (420)
Q Consensus 337 ~g~~~~~~~~g~ 348 (420)
.++.-.-..+++
T Consensus 390 fsi~kfyq~~~s 401 (461)
T KOG3098|consen 390 FSLFKFYQSVAS 401 (461)
T ss_pred HHHHHHHHHHHH
Confidence 888866665555
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.021 Score=58.04 Aligned_cols=143 Identities=17% Similarity=0.232 Sum_probs=78.0
Q ss_pred HHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHH---HH
Q 014716 213 VAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT---MS 288 (420)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~---~~ 288 (420)
+..++..++..++......++.-. |-+....+.+++.+..+..+|..++|++.++. .++ ...+-+.+ ..
T Consensus 21 ~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~------~~~-~~~~e~~i~l~~~ 93 (521)
T PRK03612 21 AAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA------AAG-FVAVELLLALLGG 93 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH------HHH-HHHHHHHHHHHHH
Confidence 333444444455555555555433 87878888888999999999999888876433 111 11111111 11
Q ss_pred HHHHHH-HhcCc-----hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHH-H
Q 014716 289 VGHIVV-ASGFP-----GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIY-D 361 (420)
Q Consensus 289 ~~~l~l-~~~~~-----~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~-~ 361 (420)
++..++ ..... ...+...++.++..|+..|....+..+... ++.|...|-....+.+|+ ++|+++.+.+. .
T Consensus 94 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa-~~G~l~~~~vLlp 171 (521)
T PRK03612 94 LSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGA-LVGGLAFPFLLLP 171 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHH-HHHHHHHHHHHHH
Confidence 111111 11110 112344556678888887776666554322 234555666666666666 46666777654 3
Q ss_pred hhc
Q 014716 362 NVA 364 (420)
Q Consensus 362 ~~g 364 (420)
..|
T Consensus 172 ~lG 174 (521)
T PRK03612 172 RLG 174 (521)
T ss_pred hcc
Confidence 556
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.042 Score=53.37 Aligned_cols=109 Identities=9% Similarity=-0.020 Sum_probs=76.3
Q ss_pred cchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH----hcCchhHHHHHHHHHHhhhhh
Q 014716 241 SAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA----SGFPGNLYVGSIIVGVCYGCQ 316 (420)
Q Consensus 241 ~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~----~~~~~~l~~~~~l~G~~~g~~ 316 (420)
+.--++...+.++-+++|-..-.+ |+ ++.+++.+...+..+..++-+ .++.+.+++..+..|+..|+.
T Consensus 281 ~~Y~~Y~~~YQ~GVFISRSS~~~~--ri------r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~ 352 (402)
T PF02487_consen 281 DQYRWYQLLYQLGVFISRSSLPFF--RI------RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGAS 352 (402)
T ss_pred HHHHHHHHHHHHHHhhhhcceeee--eh------hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHH
Confidence 344566778888888887654433 33 556666666655554444322 234455566777789999999
Q ss_pred hhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHH
Q 014716 317 WSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGY 358 (420)
Q Consensus 317 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~ 358 (420)
+......+.|..++++|-.++|...++..+|. +++.+++-.
T Consensus 353 YVNtF~~I~~~~~~~~REFslg~vsvsds~GI-~lAgll~l~ 393 (402)
T PF02487_consen 353 YVNTFYRISEEVPPEDREFSLGAVSVSDSLGI-LLAGLLGLP 393 (402)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHH-HHHHHHHHH
Confidence 98888889999999999999999999999998 465544433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.016 Score=57.51 Aligned_cols=100 Identities=12% Similarity=0.047 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHH--HHHHHHHHHHHhc----------CchhHHHHHHHHHH
Q 014716 244 NSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL--ATMSVGHIVVASG----------FPGNLYVGSIIVGV 311 (420)
Q Consensus 244 ~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~--~~~~~~~l~l~~~----------~~~~l~~~~~l~G~ 311 (420)
-....+++++..+||.+..+. .+ ++++ .| ++..... +++...++++... +....++..+++|+
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~--~~-p~~~-~~-~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gl 384 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKF--MW-PDED-SR-WLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGF 384 (437)
T ss_pred HHHHHHHHHHHHHHhhhhhee--Ee-eCCC-cc-chHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHH
Confidence 456678899999999976543 11 1111 22 2222221 2233333333311 22345677888999
Q ss_pred hhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHH
Q 014716 312 CYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGS 348 (420)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 348 (420)
..|-..+....+.++..+++++-.+..+++.+..+|-
T Consensus 385 tnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl 421 (437)
T TIGR00939 385 SNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGL 421 (437)
T ss_pred hhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9998888888888888888889888888877777776
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0017 Score=63.23 Aligned_cols=105 Identities=20% Similarity=0.300 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHH--h-cC-c------hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCC---chHHHHHHHHHHhh
Q 014716 279 FIAITLATMSVGHIVVA--S-GF-P------GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVG---HMGTIFNTIAIASP 345 (420)
Q Consensus 279 ~~~i~~~~~~~~~l~l~--~-~~-~------~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~ 345 (420)
.+.++.++..+|++++. . .. . ..+++++.+.++|.|+.-+...++.+|.|+++ ++...+++...+.+
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in 82 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGIN 82 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 46778888888888743 2 11 1 35788899999999999999999999999876 36777888899999
Q ss_pred hHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHH
Q 014716 346 VGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAF 396 (420)
Q Consensus 346 ~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~ 396 (420)
+|+ +++..+.+++.++.+ |...|.+.++..+++++..+
T Consensus 83 ~G~-~~~~~~~~~i~~~~~------------~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 83 IGS-LFSPTLVPYIQQNYG------------WFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHH-HHHHHCCCHHHHCS-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hhh-Hhhcccchhhccccc------------hhhhhhHHHHHHHHHHHHHH
Confidence 999 588889999988887 99999999988888876543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0017 Score=61.55 Aligned_cols=96 Identities=6% Similarity=-0.026 Sum_probs=71.4
Q ss_pred CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCC----Ccccc
Q 014716 298 FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEG----NSCNG 373 (420)
Q Consensus 298 ~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~----~~c~g 373 (420)
+...+.+..++.|.|.+..++..++++++..++|++++..++.+..+.+|. +++|.+.+.+........+ ..-..
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~-~~gP~i~~~~i~~~~~~~~~~~~~~~~~ 87 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGT-TVAPLFGGSLILSGAGDLSMQVATANAE 87 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHH-HHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence 345678888999999999999999999999999999999999999999999 6999999988853210000 00000
Q ss_pred ccccHHHHHHHHHHHHHHHHH
Q 014716 374 THCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 374 ~~~~~~~f~i~~~~~~~~~~~ 394 (420)
.+.|+++|++.+++.++..++
T Consensus 88 ~~~~~~~yl~ia~~~~~~~i~ 108 (310)
T TIGR01272 88 AAKVHTPYLLLAGALAVLAII 108 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 123888988776665554433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00012 Score=74.56 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=2.7
Q ss_pred hhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHhc-------
Q 014716 225 TVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASG------- 297 (420)
Q Consensus 225 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~~------- 297 (420)
+...+.++-+.+++++.++|++.+.+-+++.+..++..++.+|. .|..++.++.++++++.++++.+
T Consensus 22 ~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~------hrprwig~g~~~~~~g~~l~~lPhf~~~~y 95 (539)
T PF03137_consen 22 VNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG------HRPRWIGIGALLMGLGSLLFALPHFLSGPY 95 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------CCcceeeecHHHHHHHHHHHhccHhhcCCC
Confidence 33455566566699999999999999999999999888887775 66677888888888887764310
Q ss_pred -----C---------------------------------------chhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCch
Q 014716 298 -----F---------------------------------------PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHM 333 (420)
Q Consensus 298 -----~---------------------------------------~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~ 333 (420)
. ...++++-++.|+|....+++..+++=|..++++-
T Consensus 96 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~s 175 (539)
T PF03137_consen 96 SYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNS 175 (539)
T ss_dssp --------------------------------------------------------SSS---------------------
T ss_pred ccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccC
Confidence 0 01144566778888889999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHhhhHHHHHHHH
Q 014716 334 GTIFNTIAIASPVGSYVCSVRIIGYIYD 361 (420)
Q Consensus 334 g~~~g~~~~~~~~g~~~~~~~l~g~l~~ 361 (420)
+...|+......+|. ++|=.++|....
T Consensus 176 plYiGi~~~~~~lGP-a~Gf~lg~~~L~ 202 (539)
T PF03137_consen 176 PLYIGILYAMSILGP-ALGFLLGSFCLR 202 (539)
T ss_dssp ----------------------------
T ss_pred ccchhhhhHHhhccH-HHHHHHHHHHHh
Confidence 999999988888888 466555555443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.013 Score=60.67 Aligned_cols=72 Identities=18% Similarity=0.154 Sum_probs=62.4
Q ss_pred CcHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHH-HHHHhHhhhhhhhHhH
Q 014716 197 MNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSI-WNFLGRFGGGYVSDIV 268 (420)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~-~~~ig~~~~G~lsDr~ 268 (420)
.+.+++++|+.|....++..+-.....++...+|-|++.+ |.++..+..++....+ +.++|-.++|++.-|+
T Consensus 383 ~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkf 456 (735)
T KOG3626|consen 383 KSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKF 456 (735)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeee
Confidence 3578899999999999999888888889999999999977 9999999999977766 4568889999998877
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.033 Score=55.54 Aligned_cols=144 Identities=13% Similarity=0.069 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhcccchhhhccHHHHHHHcCC-----CccchhHHHHHHHHHHHHh-HhhhhhhhHhHhhhcCCChhHHH
Q 014716 207 NFWLLFVAMLCGMGSGLATVNNISQIGESLGY-----PTSAINSLVSLWSIWNFLG-RFGGGYVSDIVLHRMGWERPSFI 280 (420)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----s~~~~~~~~~~~~~~~~ig-~~~~G~lsDr~~~~~~~~r~~~~ 280 (420)
.+....+..||....++ .+-.+=+..+. +.+...++-+...+.+.+. .++-+++++|+ +|+.+.
T Consensus 8 k~~~~~l~fF~il~~Y~----iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~------~~~~lf 77 (472)
T TIGR00769 8 KFLPLFLMFFCILFNYT----ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL------SKEALF 77 (472)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC------CHHHhH
Confidence 55555566665543222 12222222244 2345555555554544444 78889999999 444444
Q ss_pred HHHHHHHHHHHHHHH---hc--C---------------------------chhHHHHHHHHHHhhhhhhh-hHHHHHHHh
Q 014716 281 AITLATMSVGHIVVA---SG--F---------------------------PGNLYVGSIIVGVCYGCQWS-LMPTITYEI 327 (420)
Q Consensus 281 ~i~~~~~~~~~l~l~---~~--~---------------------------~~~l~~~~~l~G~~~g~~~~-~~~~~~~~~ 327 (420)
-+....+...+++++ .+ + .+...+..+...+......+ +.++.+.|+
T Consensus 78 ~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi 157 (472)
T TIGR00769 78 YTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQI 157 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444433333333222 00 0 11111222233333334445 788999999
Q ss_pred hCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHH
Q 014716 328 FGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYD 361 (420)
Q Consensus 328 ~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~ 361 (420)
+..++-.+.+++..++.++|. ++++.+..++.+
T Consensus 158 ~t~~qakRfy~l~~~ganlg~-i~sg~~~~~~~~ 190 (472)
T TIGR00769 158 TTIDEAKRFYALFGLGANVAL-IFSGRTIKYFSK 190 (472)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 999999999999999999999 578878777764
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0092 Score=59.16 Aligned_cols=80 Identities=14% Similarity=0.238 Sum_probs=61.3
Q ss_pred HHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHH
Q 014716 306 SIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMA 385 (420)
Q Consensus 306 ~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~ 385 (420)
.+++|.+.-.......++-+++.+++++++..|++.....++. ..+|++...++...| +++.+.+..
T Consensus 395 i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~-~~~~~~~t~~~~~~g------------~~~v~~~~~ 461 (488)
T KOG2325|consen 395 IVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIAR-VVGPIFSTAIFTLSG------------PRPVWIILL 461 (488)
T ss_pred hheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhh-hhhHHHHhhhHHhcC------------ccHHHHHHH
Confidence 3345555555566677888999999999999999999999999 588999999998888 777777766
Q ss_pred HHHHHHHHHHHHH
Q 014716 386 SVAFVGCLVAFLL 398 (420)
Q Consensus 386 ~~~~~~~~~~~~~ 398 (420)
+..++...+..+.
T Consensus 462 ~~~l~~~~l~~~~ 474 (488)
T KOG2325|consen 462 CLLLVVAALWIVF 474 (488)
T ss_pred HHHHHHHHHHHHH
Confidence 6655555443333
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0026 Score=61.74 Aligned_cols=136 Identities=15% Similarity=0.069 Sum_probs=99.6
Q ss_pred HHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHH
Q 014716 215 MLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVV 294 (420)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l 294 (420)
.+-..+....=..++++|++++|.+.+..+.....-.+...+.+|+.|..|||...|+. +||+.+..+....+++++++
T Consensus 41 a~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~G-RRRPfI~~~s~~i~~~l~Li 119 (498)
T KOG0637|consen 41 AAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYG-RRRPFILAGSLLIAVSLFLI 119 (498)
T ss_pred HHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccc-cccchHHHhhHHHHHHHhhh
Confidence 33334444456678899999999999999988888899999999999999999876665 66777777777777777654
Q ss_pred H-h--------cCc----hh-----HHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHH-HHHHHHHHhhhHHHHhh
Q 014716 295 A-S--------GFP----GN-----LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGT-IFNTIAIASPVGSYVCS 352 (420)
Q Consensus 295 ~-~--------~~~----~~-----l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~~~g~~~~~ 352 (420)
. . .+. .. .++..-+.=++.-..+.+.-++..|+...+++-+ +++.......+|+ ++|
T Consensus 120 g~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGn-vLG 195 (498)
T KOG0637|consen 120 GYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGN-VLG 195 (498)
T ss_pred hhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcc-eee
Confidence 3 1 111 01 2233334445566778888999999998887777 8888888888888 455
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.36 Score=47.67 Aligned_cols=158 Identities=12% Similarity=0.047 Sum_probs=93.9
Q ss_pred cHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 198 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
.++.-++++.|...+...++... ...+...+..|++..|+++...+.+=+.-.+....|..+..++.+|+|..+. | -
T Consensus 251 ~w~~Y~~q~vflas~alalLY~T-VLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~-G-~ 327 (432)
T PF06963_consen 251 GWRTYFRQPVFLASFALALLYFT-VLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRA-G-L 327 (432)
T ss_pred cHHHHHhCHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-H-H
Confidence 45556666666555444444432 4456667778888889999999999999999999999999999999975432 1 1
Q ss_pred HHHHHHHHHHHHHHHHHH-hcCc-hhHHHHHHHHHHh-----hhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHH
Q 014716 278 SFIAITLATMSVGHIVVA-SGFP-GNLYVGSIIVGVC-----YGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYV 350 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~-~~~~-~~l~~~~~l~G~~-----~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 350 (420)
+-+..=.....++...+. ..++ .......++.|+. .=++--...-++.|..|.++||+..|+.+....+...
T Consensus 328 ~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~l- 406 (432)
T PF06963_consen 328 WSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFEL- 406 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHH-
Confidence 111111111112222222 1222 1222222233332 2223334556677889999999999999888777763
Q ss_pred hhhHHHHHHH
Q 014716 351 CSVRIIGYIY 360 (420)
Q Consensus 351 ~~~~l~g~l~ 360 (420)
+ ..+.+.+.
T Consensus 407 l-~~~~~ii~ 415 (432)
T PF06963_consen 407 L-SFVLTIIF 415 (432)
T ss_pred H-HHHHHhcc
Confidence 3 24444443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0039 Score=64.49 Aligned_cols=186 Identities=16% Similarity=0.184 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHhcccchhh-hccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHH
Q 014716 206 LNFWLLFVAMLCGMGSGLAT-VNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 284 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~ 284 (420)
+.|..+.....+..+...++ ...+.++=+.+++++++.|++.+.+-+++.+...+..+..-|. .|..++.++.
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~------HrPr~Ig~G~ 169 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG------HRPRWIGIGL 169 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc------Cccceeeech
Confidence 34444443333333332233 3334444444599999999999999999999888888887776 6667788888
Q ss_pred HHHHHHHHHHHhc-------------------Cc--------------------------------h--hHHHHHHHHHH
Q 014716 285 ATMSVGHIVVASG-------------------FP--------------------------------G--NLYVGSIIVGV 311 (420)
Q Consensus 285 ~~~~~~~l~l~~~-------------------~~--------------------------------~--~l~~~~~l~G~ 311 (420)
++++++.++.+.+ ++ . .++++-++.|+
T Consensus 170 ~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GI 249 (735)
T KOG3626|consen 170 VLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGI 249 (735)
T ss_pred hHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhc
Confidence 8888877765410 00 0 13455667788
Q ss_pred hhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCC-CCCc---ccc---ccccHHHHHHH
Q 014716 312 CYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASG-EGNS---CNG---THCFMLSFLIM 384 (420)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~-~~~~---c~g---~~~~~~~f~i~ 384 (420)
|.-..++...+++=|...+++-....|+++....+|. ++|=++++.+...+.+. .+.. -.. ..+|...|+++
T Consensus 250 G~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGP-aiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~ 328 (735)
T KOG3626|consen 250 GATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGP-AIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLIC 328 (735)
T ss_pred CCCCCccCCCccccccccccCCcHHHHHHHHHHHhhh-HHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHH
Confidence 8888999999999999999999999999988888888 47655555555444322 1111 111 22466666777
Q ss_pred HHHHHHHHHHHHHH
Q 014716 385 ASVAFVGCLVAFLL 398 (420)
Q Consensus 385 ~~~~~~~~~~~~~~ 398 (420)
+.+.++..+..+.+
T Consensus 329 g~~~~~~a~p~f~f 342 (735)
T KOG3626|consen 329 GALLLFSAVPLFFF 342 (735)
T ss_pred HHHHHHHHHHHHhC
Confidence 77776666554443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.012 Score=43.71 Aligned_cols=68 Identities=12% Similarity=0.040 Sum_probs=57.0
Q ss_pred hhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHh
Q 014716 223 LATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVAS 296 (420)
Q Consensus 223 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~ 296 (420)
+.++..+|.+.++.++|..+++++.+...++..+|.+...++.++. +++..+..+++...+..+.++.
T Consensus 9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~------~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS------RPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999999999999999999999999988875 5556677777777777777663
|
Note that many members are hypothetical proteins. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.39 Score=47.70 Aligned_cols=194 Identities=14% Similarity=0.093 Sum_probs=106.9
Q ss_pred cHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCC---
Q 014716 198 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW--- 274 (420)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~--- 274 (420)
.+++++|.+....+.+..+..-.+..........=+-+.|++.++.+++.. ..+...++.|+++-|+.+.+..
T Consensus 270 ~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlEkG~~KE~LAl~~l----i~~P~qii~~~~~~Kws~g~~P~~~ 345 (544)
T PF13000_consen 270 SLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLEKGLSKEDLALLVL----IDFPFQIILPYYIGKWSAGSPPLDV 345 (544)
T ss_pred HHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHHcCCCHHHhHHHHH----HhhhHHHHHHHHhhhhhcCCCcccc
Confidence 456777877777666666655544444444555556688999887766553 3344455556666666443220
Q ss_pred -----------C-------------hhHHHH-HHHHHHH-HHHHHHH-hc-C---chhHHHHH----HHHHHhhhhhhhh
Q 014716 275 -----------E-------------RPSFIA-ITLATMS-VGHIVVA-SG-F---PGNLYVGS----IIVGVCYGCQWSL 319 (420)
Q Consensus 275 -----------~-------------r~~~~~-i~~~~~~-~~~l~l~-~~-~---~~~l~~~~----~l~G~~~g~~~~~ 319 (420)
. |.|... .+=++++ ++..... .+ + +...++.. ++-.+..-..+..
T Consensus 346 ~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVa 425 (544)
T PF13000_consen 346 DNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVA 425 (544)
T ss_pred ccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011000 0001111 1111111 11 1 11122222 2222333345555
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCC----------------CCcc---cccccc--H
Q 014716 320 MPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGE----------------GNSC---NGTHCF--M 378 (420)
Q Consensus 320 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~----------------~~~c---~g~~~~--~ 378 (420)
..+.-+.+-+|..-||-+.+.|+..++|+. .-..+.=++.|....++ ...| .|-.|- +
T Consensus 426 i~AFharISDP~IGGTYMTLLNTvSNLGGt-WP~~~vL~lVD~fT~~~C~~~~t~~~~c~~~~~k~~Ct~~~GG~C~i~r 504 (544)
T PF13000_consen 426 IMAFHARISDPAIGGTYMTLLNTVSNLGGT-WPRTFVLWLVDYFTVATCTVPGTNSFSCSSDAEKEQCTKAGGGTCVIIR 504 (544)
T ss_pred HHHHHhhccCcccchHHHHHHHHHHhcCCC-chHHHHHHHhhhccccccCCCCCCCceeccHHHHHHHhhCCCCeEEEEe
Confidence 666677888889999999999999999984 65666777777754211 1346 256676 7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014716 379 LSFLIMASVAFVGCLVAF 396 (420)
Q Consensus 379 ~~f~i~~~~~~~~~~~~~ 396 (420)
..|++..++|++-.++.+
T Consensus 505 DGYYi~~~lCvviGi~~~ 522 (544)
T PF13000_consen 505 DGYYITNILCVVIGIVLW 522 (544)
T ss_pred ccchhhhHHHHHHHHHHH
Confidence 888888777776554433
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.045 Score=52.92 Aligned_cols=166 Identities=13% Similarity=-0.000 Sum_probs=101.4
Q ss_pred hhhccHHHHHHHc----CCCccc----hhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH
Q 014716 224 ATVNNISQIGESL----GYPTSA----INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA 295 (420)
Q Consensus 224 ~~~~~~~~~~~~~----g~s~~~----~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~ 295 (420)
..++..|.|.++. |.++.+ .+...++..+...+-.|+.|.++|+.| .||..+.+...+..+..+++.
T Consensus 33 vtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g-----~Rk~~~~~f~~i~i~~~~~L~ 107 (438)
T COG2270 33 VTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPG-----PRKKFFGFFTAIGIISTFLLW 107 (438)
T ss_pred eeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCC-----CcchHHHHHHHHHHHHHHHHH
Confidence 3555677776643 334332 344556777788888999999999998 445566666666666655554
Q ss_pred --hc-Cc-hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhh----cCCC
Q 014716 296 --SG-FP-GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV----ASGE 367 (420)
Q Consensus 296 --~~-~~-~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~----g~~~ 367 (420)
.. +. ....+..++..++.......+.++..+..++++.+...|+....+.+|+.+ +++.....-.. +...
T Consensus 108 ~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i--~li~~~~~~~~~~~~~~~~ 185 (438)
T COG2270 108 FIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVI--LLIFVVLGFALGQQTGITI 185 (438)
T ss_pred HhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchH--HHHHHHHHHhcccccceeE
Confidence 22 22 234455666778888888899999999999988888877776666666643 23332211111 1000
Q ss_pred ----CCccccccccHHHHHHHHHHHHHHHHHHHH
Q 014716 368 ----GNSCNGTHCFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 368 ----~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
-..-.+.+ -|.++.+.++-.++-.+-.+.
T Consensus 186 ~l~~l~~~~~~~-~ri~~~l~A~W~li~~iPm~~ 218 (438)
T COG2270 186 ILLGLPPADGED-VRITGLLAALWWLLFALPMIL 218 (438)
T ss_pred EeeccCcccccc-chhHHHHHHHHHHHHHhHHHh
Confidence 00011222 567787777777666554443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.15 Score=52.41 Aligned_cols=161 Identities=19% Similarity=0.181 Sum_probs=112.8
Q ss_pred hcccchhhhccHHHHHH-HcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-
Q 014716 218 GMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA- 295 (420)
Q Consensus 218 ~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~- 295 (420)
-..+.++...++-.|+. .++.+...+.-.+..++-......+++++++|.+- +|-+.+.++.++..+++.++.
T Consensus 49 e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~-----gry~tI~~~s~i~~~G~~~lt~ 123 (571)
T KOG1237|consen 49 ERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFL-----GRYFTINIGSLISLLGLFGLTL 123 (571)
T ss_pred HHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555554 55777778888888888888999999999999985 787888888888777765432
Q ss_pred ----h---c------------C-c-----hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCC---C---chHHHHHHHHHHh
Q 014716 296 ----S---G------------F-P-----GNLYVGSIIVGVCYGCQWSLMPTITYEIFGV---G---HMGTIFNTIAIAS 344 (420)
Q Consensus 296 ----~---~------------~-~-----~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~---~---~~g~~~g~~~~~~ 344 (420)
. . . + ..++...-+..+|.|+.-+...+.-+|.|+. + .....+++.....
T Consensus 124 ~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~ 203 (571)
T KOG1237|consen 124 SAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQ 203 (571)
T ss_pred HHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHH
Confidence 0 0 0 0 1255556667778999999999999999982 2 2236677778888
Q ss_pred hhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHH
Q 014716 345 PVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAF 396 (420)
Q Consensus 345 ~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~ 396 (420)
..|.. ++..+.-++-|..+ |...|.+..++.++++++.+
T Consensus 204 ~~g~l-~a~t~~vyiq~~~~------------w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 204 NGGAL-LAQTVLVYIQDNVG------------WKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred HHHHH-HHHHHHHhhhhccc------------ceeeccHHHHHHHHHHHHHH
Confidence 88884 55555555555555 98999888888877776543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.3 Score=47.66 Aligned_cols=147 Identities=10% Similarity=0.065 Sum_probs=96.6
Q ss_pred cCCCccchhHHHHHHHH-HHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhh
Q 014716 236 LGYPTSAINSLVSLWSI-WNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCY 313 (420)
Q Consensus 236 ~g~s~~~~~~~~~~~~~-~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~ 313 (420)
+|++.++..--+-.... ...+.-+....++|.. +-|+++++..+...+...++. ..+...+-+.-+..|++.
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l------~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~ 108 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL------RYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLAT 108 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 68887776544433322 3455666778999999 556777666665555544444 555566777777788777
Q ss_pred hhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHH
Q 014716 314 GCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCL 393 (420)
Q Consensus 314 g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~ 393 (420)
+.- ....+++-...++++.-++.+....+..+|.. ++.+++-.+....+. + |....++..+...++++
T Consensus 109 a~e-vay~sYiys~v~~~~yq~vts~~raa~l~g~~-~s~~lgQllvs~~~~---------s-y~~L~~isl~~~~~a~~ 176 (412)
T PF01770_consen 109 AAE-VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRF-ISSLLGQLLVSFGGV---------S-YFQLNYISLASVSLALL 176 (412)
T ss_pred HHH-HHHHHHheeecCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC---------C-HHHHHHHHHHHHHHHHH
Confidence 663 45667777777888888898888888877773 555454444442221 1 77777777777777777
Q ss_pred HHHHHHH
Q 014716 394 VAFLLFI 400 (420)
Q Consensus 394 ~~~~~~~ 400 (420)
+++++..
T Consensus 177 ~~~fLP~ 183 (412)
T PF01770_consen 177 IALFLPM 183 (412)
T ss_pred HHHHcCC
Confidence 7666543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.0055 Score=57.98 Aligned_cols=98 Identities=11% Similarity=0.079 Sum_probs=3.5
Q ss_pred HHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHH--HHHHHHHHHHH-h----------cCchhHHHHHHHHHHh
Q 014716 246 LVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL--ATMSVGHIVVA-S----------GFPGNLYVGSIIVGVC 312 (420)
Q Consensus 246 ~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~--~~~~~~~l~l~-~----------~~~~~l~~~~~l~G~~ 312 (420)
...+++++..+||.+.++. ++-.+ +++++...+. +++...++++. . .+....++..+++|+.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~--~~~~~---~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~T 261 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWP--RWPGP---SPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFT 261 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhccee--Eeccc---ccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHc
Confidence 4567899999999998875 23111 2233332221 12222222221 1 1223456678889999
Q ss_pred hhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHH
Q 014716 313 YGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGS 348 (420)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 348 (420)
.|-..+....+.++..+++++..+..+++....+|-
T Consensus 262 NGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl 297 (309)
T PF01733_consen 262 NGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGL 297 (309)
T ss_dssp -----HHHH---------------------------
T ss_pred cchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 999888888888999988888888887766666665
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=94.92 E-value=3 Score=41.32 Aligned_cols=176 Identities=11% Similarity=0.071 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHH---HH
Q 014716 208 FWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIA---IT 283 (420)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~---i~ 283 (420)
.|.++...++.....=+..+..+.++.+. .-+---.+.+-..-++..++..+..|...||..|.+.. +..+. ++
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~--~~~l~~Qn~s 81 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVI--RTSLVVQNLS 81 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhH--HHHHHHHHHH
Confidence 35556666666655566777778777776 22322333344444555666677778888998444321 11111 11
Q ss_pred HHHHHHHHHHHH-hcCc----hhHHHHHHHHHHhhhh---hhhhHHHHH--HHh----h--CCCchHHHHHHHHHHhhhH
Q 014716 284 LATMSVGHIVVA-SGFP----GNLYVGSIIVGVCYGC---QWSLMPTIT--YEI----F--GVGHMGTIFNTIAIASPVG 347 (420)
Q Consensus 284 ~~~~~~~~l~l~-~~~~----~~l~~~~~l~G~~~g~---~~~~~~~~~--~~~----~--~~~~~g~~~g~~~~~~~~g 347 (420)
..+.+...+.+. .... .......+..-...|+ ..+....+. .|+ . .++.+....+.+.-.-.+.
T Consensus 82 v~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~c 161 (432)
T PF06963_consen 82 VAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFC 161 (432)
T ss_pred HHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHH
Confidence 111111112112 1111 1222111111111121 122222222 222 2 1223444444444444455
Q ss_pred HHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014716 348 SYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 398 (420)
Q Consensus 348 ~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~ 398 (420)
- +++|++.|.+.+..+ +..+..+.++..+++..+=.++
T Consensus 162 k-llaPl~vG~l~t~~s------------~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 162 K-LLAPLFVGLLMTFAS------------PVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred H-HHHHHHHHHHhhccC------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5 689999999988776 7777888888888887664443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.6 Score=42.51 Aligned_cols=137 Identities=7% Similarity=0.014 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHH
Q 014716 207 NFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 285 (420)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~ 285 (420)
.++..++...-.......+++..+++.+.+ +.+. +..+...+.+.+.+..++.-.+--+...|. .++....+...
T Consensus 19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~--~~~~~~~l~~~ 94 (406)
T KOG1479|consen 19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTRL--RTRVGYLLSLI 94 (406)
T ss_pred HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 444444444444455566777788888777 5544 555556666666666666666655554442 22222221111
Q ss_pred -HHHHHHHHHHh--cCc------hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHH
Q 014716 286 -TMSVGHIVVAS--GFP------GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGS 348 (420)
Q Consensus 286 -~~~~~~l~l~~--~~~------~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 348 (420)
+..+..+.++. ... ....+..++.+++.|..++......++ +|+|.....++=.++++.+.+
T Consensus 95 ~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~G~a~aG~l~S 165 (406)
T KOG1479|consen 95 AILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMSGQALAGTLTS 165 (406)
T ss_pred HHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHhcchhHhHHHH
Confidence 11111111221 111 123455666777888888777776664 666654444433344444443
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.39 Score=45.44 Aligned_cols=140 Identities=11% Similarity=0.123 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHH
Q 014716 246 LVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTIT 324 (420)
Q Consensus 246 ~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~ 324 (420)
.=++..+.++++.+..|.+.-.+.| .+...+.++.+..+...+++. ..+.+..+++.+++...+....++....+
T Consensus 276 veAv~tlLGa~~~~~~g~l~i~w~r----~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~i 351 (433)
T KOG3810|consen 276 VEAVSTLLGAIAALAAGYLNINWNR----WGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQI 351 (433)
T ss_pred HHHHHHHHHHHHHHHHHheeeccch----hhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHH
Confidence 3356666777788888888555522 334556666555555555555 56677788999999988888888888888
Q ss_pred HHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 014716 325 YEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 325 ~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
++....+..|..+|+.+....+-. .++.-...|..|-+-+. -....-|..=|.+.+++.+++..+
T Consensus 352 A~nL~~e~~gLvFGiNTFvAl~lQ----silT~iVvd~~g~~L~i-r~Q~~~Y~~Yf~v~~~i~~~~~~~ 416 (433)
T KOG3810|consen 352 ARNLSSELFGLVFGINTFVALILQ----SILTLIVVDDRGLGLDI-RTQFVVYSSYFIVLGVIFLIGFGI 416 (433)
T ss_pred HHhhhhhhheeeeehHHHHHHHHH----HhheEEEEcccccCCCc-ceeEEEEeehHHHHHHHHHHHHHH
Confidence 888888899999888754433322 22333334543311110 001222444477777777777655
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.03 Score=55.66 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=51.6
Q ss_pred hhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHH
Q 014716 224 ATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVV 294 (420)
Q Consensus 224 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l 294 (420)
.....++.|.+++|+++.+.+.++....+..+++.|++|.++||+-|| |..+..+++....+.+++
T Consensus 29 ~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~-----r~lllgsl~~~v~a~fll 94 (618)
T KOG3762|consen 29 SLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKR-----RPLLLGSLLLSVTATFLL 94 (618)
T ss_pred ccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHhe
Confidence 356678888899999999999999999999999999999999999533 344555555544444443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.85 Score=44.29 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=71.5
Q ss_pred hhccHHHHHHHc---CC-CccchhHHHHH-HHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHH-HH---
Q 014716 225 TVNNISQIGESL---GY-PTSAINSLVSL-WSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIV-VA--- 295 (420)
Q Consensus 225 ~~~~~~~~~~~~---g~-s~~~~~~~~~~-~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~-l~--- 295 (420)
.....|-+..+. +. ++--.-.+..+ +++...+|++...++-+.- +|...+...+=+..+-.+. +-
T Consensus 262 TLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~------~r~l~i~v~lR~lfiPlF~~cn~~~ 335 (406)
T KOG1479|consen 262 TLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD------PRKLTIPVLLRLLFIPLFLLCNYPP 335 (406)
T ss_pred eeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC------CceehHHHHHHHHHHHHHHHhccCC
Confidence 344556555432 11 22233444555 8889999988887775553 3333333333222232222 11
Q ss_pred ----hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHH
Q 014716 296 ----SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGS 348 (420)
Q Consensus 296 ----~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 348 (420)
..+.++..+...++|+..|-..+....+.++.++++++-.+.+++......|-
T Consensus 336 ~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl 392 (406)
T KOG1479|consen 336 LPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGL 392 (406)
T ss_pred CCceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHH
Confidence 23455678888899999998888888888888888887776666655555554
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.17 Score=46.06 Aligned_cols=146 Identities=14% Similarity=0.056 Sum_probs=79.7
Q ss_pred HHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 014716 231 QIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVG 310 (420)
Q Consensus 231 ~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~~~~~~l~~~~~l~G 310 (420)
++.+..|+...+.+.+...-.-.+.+...+.|.++||.|||+. ....++...++++-=-.+.+..+.+++++-|
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKra------cvtycitYiLsCiTKhSpqYkVLmVGR~LGG 135 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA------CVTYCITYILSCITKHSPQYKVLMVGRVLGG 135 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccc------eeeehHHHHHHHHhhcCCceEEEeehhhhhh
Confidence 3446668877777765543333344445566889999966642 3333333344443222445566889999999
Q ss_pred HhhhhhhhhHHHH-HHHhhCCCc-----hHHHHHHH-HHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHH
Q 014716 311 VCYGCQWSLMPTI-TYEIFGVGH-----MGTIFNTI-AIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLI 383 (420)
Q Consensus 311 ~~~g~~~~~~~~~-~~~~~~~~~-----~g~~~g~~-~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i 383 (420)
+.....++..-++ +.|-..++. ....++=. ..++.+-+ +++.+.+..+.|..+- | --.+|-.
T Consensus 136 iaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvA-iiaGlfgn~lvd~~sl-------G---PVAPFdA 204 (454)
T KOG4332|consen 136 IATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVA-IIAGLFGNLLVDTFSL-------G---PVAPFDA 204 (454)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHH-HHHHHHHHHHHHHhcc-------C---CCCchHH
Confidence 9998888776664 455443322 22222222 34444444 3444555566666542 1 2245655
Q ss_pred HHHHHHHHHH
Q 014716 384 MASVAFVGCL 393 (420)
Q Consensus 384 ~~~~~~~~~~ 393 (420)
.+++..++..
T Consensus 205 AacfLaigmA 214 (454)
T KOG4332|consen 205 AACFLAIGMA 214 (454)
T ss_pred HHHHHHHHHH
Confidence 5555544443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.83 Score=45.36 Aligned_cols=93 Identities=6% Similarity=-0.057 Sum_probs=77.3
Q ss_pred chhHH-HHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhH
Q 014716 242 AINSL-VSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLM 320 (420)
Q Consensus 242 ~~~~~-~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~~~~~~l~~~~~l~G~~~g~~~~~~ 320 (420)
.+|.. .++......+..++.+.+.|++ +.||.+.++........+.+...|..-+++..++.|+|.+..|.-.
T Consensus 50 ~aGy~~~aiiY~~ftv~~l~~psiv~~i------~~K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~Gq 123 (461)
T KOG3098|consen 50 YAGYYGQAIIYAFFTVSCLFAPSIVNFL------GPKWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQ 123 (461)
T ss_pred CccHHHHHHHHHHHHHHHHhhHHHHHHh------hHHHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheeccc
Confidence 34444 5666677778888889999999 7779999999988888888887787889999999999999999999
Q ss_pred HHHHHHhhCCCchHHHHHHH
Q 014716 321 PTITYEIFGVGHMGTIFNTI 340 (420)
Q Consensus 321 ~~~~~~~~~~~~~g~~~g~~ 340 (420)
..+.+|...++...+..++.
T Consensus 124 G~ylt~~st~~tie~Nisi~ 143 (461)
T KOG3098|consen 124 GGYLTSNSTRETIERNISIF 143 (461)
T ss_pred ceehhhcCChhhHHHHHHHH
Confidence 99999998888777766665
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.58 E-value=2.2 Score=41.13 Aligned_cols=130 Identities=10% Similarity=0.055 Sum_probs=72.9
Q ss_pred HHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhH-----hHhhhcCCChhHHHHHHHHHH
Q 014716 213 VAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSD-----IVLHRMGWERPSFIAITLATM 287 (420)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsD-----r~~~~~~~~r~~~~~i~~~~~ 287 (420)
+..-+..+.-++....+|.++++.|.|-++.+.+...+.= .--.+++..+.| |+||| |.+++-...+.
T Consensus 37 l~LYllQGiP~GL~~~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~Grr-----ksWvvp~q~ll 109 (510)
T KOG3574|consen 37 LFLYLLQGIPLGLIGAIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRR-----KSWVVPCQYLL 109 (510)
T ss_pred HHHHHHcCCchhHhhhhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccc-----cceeeehHHHH
Confidence 3333445555666779999999888876666554433322 223788899999 66544 34444444455
Q ss_pred HHHHHHHHh-cC---------chh--HHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHH
Q 014716 288 SVGHIVVAS-GF---------PGN--LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSY 349 (420)
Q Consensus 288 ~~~~l~l~~-~~---------~~~--l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 349 (420)
...+++++. .+ +.. +....++.-+..+..--..-.+.-.+..+++.|-+......+...|-+
T Consensus 110 G~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~Gyf 183 (510)
T KOG3574|consen 110 GLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYF 183 (510)
T ss_pred HHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHH
Confidence 555555441 11 111 112223333333333333444555566778888877777777777764
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.28 Score=39.18 Aligned_cols=51 Identities=10% Similarity=-0.080 Sum_probs=42.0
Q ss_pred eeeecCCCccccchhHhhhhhhccchHHHHHHHHhhhcCCCCchhHHHHHHHHHHH
Q 014716 3 YFLEYNRIPFFFFLPLSTVQGFLGLGGAALIQAYDTIWKGRPSTYLLILALLPTFA 58 (420)
Q Consensus 3 ~~~~~~r~~~~~~~~~g~~~~~~gLs~~i~~~~~~~~~~~~~~~~~~~l~~~p~~i 58 (420)
.+|+++|+++ .|+......++..+++.+.+.+.+...|+..+++......+
T Consensus 79 ~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (141)
T TIGR00880 79 IYPPEERGVA-----LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA 129 (141)
T ss_pred HCChhhhhHH-----HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHH
Confidence 4678889999 99999999999999999999998877787777766444433
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=90.32 E-value=22 Score=35.94 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=35.4
Q ss_pred hHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHH
Q 014716 319 LMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYD 361 (420)
Q Consensus 319 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~ 361 (420)
+.+..+.|++..++-.+.+++..++.++|. ++++.+...+.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigl-i~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGL-IFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 568888999999999999999999999999 466667666665
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=90.23 E-value=5.1 Score=39.18 Aligned_cols=124 Identities=11% Similarity=0.029 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHHhhhhhhhhHHHHH
Q 014716 246 LVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVAS-GFPGNLYVGSIIVGVCYGCQWSLMPTIT 324 (420)
Q Consensus 246 ~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~ 324 (420)
....-.+.+.+..+++-++.+|+ +-+.=+.+...++++++++.+. .+...-+++.++.+++.|..-...-.+
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v------~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l- 136 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRV------PYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL- 136 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhc------cchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-
Confidence 44444556777777788887777 3222244555677777777663 444445666777777777655555454
Q ss_pred HHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHH
Q 014716 325 YEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGC 392 (420)
Q Consensus 325 ~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~ 392 (420)
...|++. ..+-...|...++ ++|+...-.+.+ .|- . .+.++.+...+.++-.
T Consensus 137 t~~y~~~----~l~~wssGTG~aG-l~Ga~~y~~lT~-~g~---------s-~~~tll~~~~lp~~~~ 188 (402)
T PF02487_consen 137 THFYGKS----SLSAWSSGTGGAG-LVGALYYLGLTT-LGL---------S-PRTTLLIMLVLPAIFL 188 (402)
T ss_pred HHhcCcc----ccccccCCcChhh-HHHHHHHHHHHH-hCc---------C-HHHHHHHHHHHHHHHH
Confidence 4466643 2334445555555 455555544444 331 0 4667777666654443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.14 E-value=1.7 Score=41.76 Aligned_cols=167 Identities=10% Similarity=-0.083 Sum_probs=83.6
Q ss_pred cHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 198 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
.++++++-+..-.+......+-....+-....+.-+.|.|++.++-++......-..+++....|..+..--+-...-|.
T Consensus 257 ~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka 336 (510)
T KOG3574|consen 257 LLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKA 336 (510)
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHh
Confidence 34566665554444444444444444455566667778899987776655333333444433333333211000000111
Q ss_pred HHHHHHHHHHHHHHHHHH---hc---Cch-hHH-HHH---HHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhh
Q 014716 278 SFIAITLATMSVGHIVVA---SG---FPG-NLY-VGS---IIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPV 346 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~---~~---~~~-~l~-~~~---~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 346 (420)
...-+............. .. ... ..+ +.. .+.+...-..+....+..+++-++..-|+.+.+.|.-.++
T Consensus 337 ~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnL 416 (510)
T KOG3574|consen 337 VPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNL 416 (510)
T ss_pred hhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHh
Confidence 122222111111111111 11 011 111 112 1222222233444556677888999999999999999999
Q ss_pred HHHHhhhHHHHHHHHhhcC
Q 014716 347 GSYVCSVRIIGYIYDNVAS 365 (420)
Q Consensus 347 g~~~~~~~l~g~l~~~~g~ 365 (420)
|+. .-..++.++.|..+-
T Consensus 417 Gg~-wp~tv~l~l~D~ltv 434 (510)
T KOG3574|consen 417 GGN-WPGTVALWLADGLTV 434 (510)
T ss_pred cCC-cHHHHHHHhcccCce
Confidence 985 445788888887663
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.09 E-value=16 Score=35.04 Aligned_cols=91 Identities=14% Similarity=0.216 Sum_probs=52.8
Q ss_pred hCHHHHHHHHHHHHhcccchh----hhccHHHHHHHcCCCccchhHHHHHHH-HHHHHhHhhhhhhhHhHhhhcCCChhH
Q 014716 204 CTLNFWLLFVAMLCGMGSGLA----TVNNISQIGESLGYPTSAINSLVSLWS-IWNFLGRFGGGYVSDIVLHRMGWERPS 278 (420)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~ig~~~~G~lsDr~~~~~~~~r~~ 278 (420)
+.++++.+++...++..+... +..|+-.=.++.|++++..+....... +.+.+..+.+|.++|...+....++..
T Consensus 117 ~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~va 196 (354)
T PF05631_consen 117 HSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVA 196 (354)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcc
Confidence 346788888887776544433 333444433455888776555555454 566666777777776654444334455
Q ss_pred HHHHHHHHHHHHHHHH
Q 014716 279 FIAITLATMSVGHIVV 294 (420)
Q Consensus 279 ~~~i~~~~~~~~~l~l 294 (420)
....+..+.+++.++.
T Consensus 197 PF~~a~~~l~~~~~~I 212 (354)
T PF05631_consen 197 PFDAAIVLLAVAAVLI 212 (354)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5555555555554443
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.45 E-value=35 Score=32.68 Aligned_cols=118 Identities=17% Similarity=0.142 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhh-hcCCChhHHHHHHHH
Q 014716 208 FWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLH-RMGWERPSFIAITLA 285 (420)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~-~~~~~r~~~~~i~~~ 285 (420)
-|++.++.+.+..++..+...+..+...+ |-+.-+.+++++.+-..+.+|+.++-++.|.--. ++. .-..++.+...
T Consensus 9 ~alL~laVf~~aa~GlvyElal~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv-~vElllgligg 87 (508)
T COG4262 9 RALLLLAVFVCAACGLVYELALGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFV-DVELLLGLIGG 87 (508)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHH-HHHHHHHHhcc
Confidence 35555666666677777777888887776 7677778888888877777777776666554210 000 00111111111
Q ss_pred HHH-HHHHHHHhc---CchhHHHHHHHHHHhhhhhhhhHHHHHHH
Q 014716 286 TMS-VGHIVVASG---FPGNLYVGSIIVGVCYGCQWSLMPTITYE 326 (420)
Q Consensus 286 ~~~-~~~l~l~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~~~ 326 (420)
+.+ +..+.++.. ....++...+++|.-.|.-.+....+...
T Consensus 88 ~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~LVG~EiPL~mrml~~ 132 (508)
T COG4262 88 VSAAALYLLFALESAPSRLVLYALTAVIGVLVGAEIPLLMRMLQR 132 (508)
T ss_pred chHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 111 112223322 22346777888888888877777666654
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=83.99 E-value=34 Score=31.29 Aligned_cols=22 Identities=5% Similarity=-0.099 Sum_probs=15.9
Q ss_pred CcHHHHhhCHHHHHHHHHHHHh
Q 014716 197 MNILQSVCTLNFWLLFVAMLCG 218 (420)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~ 218 (420)
.+..+.+|+++.|...+.+...
T Consensus 85 ~s~~~~LK~K~tw~w~~~Yg~w 106 (267)
T PF07672_consen 85 PSYKSILKEKETWKWILIYGIW 106 (267)
T ss_pred chHHHHHccchHHHHHHHHHHH
Confidence 4568899999988776665443
|
|
| >PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea | Back alignment and domain information |
|---|
Probab=83.70 E-value=44 Score=32.38 Aligned_cols=26 Identities=15% Similarity=-0.158 Sum_probs=17.6
Q ss_pred HhhhhhhccchHHHHHHHHhhhcCCC
Q 014716 18 LSTVQGFLGLGGAALIQAYDTIWKGR 43 (420)
Q Consensus 18 ~g~~~~~~gLs~~i~~~~~~~~~~~~ 43 (420)
+.-+.-++.|=..+|..+.......+
T Consensus 33 ls~lv~~~~lP~liF~~i~~~~~~~~ 58 (385)
T PF03547_consen 33 LSKLVFNVFLPALIFSSIANTDTLED 58 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhh
Confidence 45556667777888888888654443
|
Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 420 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.82 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.76 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.72 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.7 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.63 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.62 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.61 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.58 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.55 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.49 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.47 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.34 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.24 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.07 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-18 Score=168.32 Aligned_cols=182 Identities=15% Similarity=0.165 Sum_probs=149.5
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhH--hhhcCCC
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIV--LHRMGWE 275 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~--~~~~~~~ 275 (420)
.++.++++.+|...+..++.......+..++|.+.++ .|+++.+++++.+...++..+++++.|+++||+ ++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~----- 319 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN----- 319 (451)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC-----
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence 4677889999999998888887778888999999988 599999999999999999999999999999998 43
Q ss_pred hhHHHHHHHHHHH-HHHHHHHhc---CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhh-HHHH
Q 014716 276 RPSFIAITLATMS-VGHIVVASG---FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPV-GSYV 350 (420)
Q Consensus 276 r~~~~~i~~~~~~-~~~l~l~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~ 350 (420)
| ..+.++..+.. ++++++... +...+.+..++.|++.+...+...+++.|.+|+++||+++|+.+....+ |. .
T Consensus 320 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~-~ 397 (451)
T 1pw4_A 320 R-GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS-V 397 (451)
T ss_dssp H-HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH-H
T ss_pred c-hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH-H
Confidence 2 33444444444 555554422 3344666777888888888888899999999999999999999999999 98 5
Q ss_pred hhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 351 CSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 351 ~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
++|.+.|.+.|..| |+..|++.+++++++.++.+++.
T Consensus 398 ~~~~~~g~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 398 AASAIVGYTVDFFG------------WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHSSC------------SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999887 99999999998888877665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.2e-18 Score=165.14 Aligned_cols=174 Identities=13% Similarity=0.121 Sum_probs=142.3
Q ss_pred cHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHH-HHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCC
Q 014716 198 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQI-GESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWE 275 (420)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~ 275 (420)
+.++.+|++.+|...+..++.......+..++|.| .++. |++..+++...+...++..+++++.|+++||+ +
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~------~ 323 (438)
T 3o7q_A 250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF------A 323 (438)
T ss_dssp HHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------C
T ss_pred hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh------c
Confidence 35778899999999998888888778888899999 8887 99999999999999999999999999999999 6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHH
Q 014716 276 RPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRI 355 (420)
Q Consensus 276 r~~~~~i~~~~~~~~~l~l~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l 355 (420)
|+..+.++.++.+++.+++............++.|++.+..++...++..|.+|++ ++++.++.. ...+|. .++|.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~-~~~~~~ 400 (438)
T 3o7q_A 324 PHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGG-GIVTPV 400 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHH-HHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHH-HHHHHH
Confidence 66777777777777776666444334455567889999999999999999999966 888888887 455887 588999
Q ss_pred HHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHH
Q 014716 356 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVG 391 (420)
Q Consensus 356 ~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~ 391 (420)
.|.+.|..|+ |+..|++.+++.++.
T Consensus 401 ~g~l~~~~g~-----------~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 401 MGFVSDAAGN-----------IPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHHTS-----------SGGGGHHHHHHHHHH
T ss_pred HHHHHHHhcc-----------hHHHHHHHHHHHHHH
Confidence 9999999886 777887765544443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.4e-17 Score=162.00 Aligned_cols=182 Identities=13% Similarity=0.025 Sum_probs=130.5
Q ss_pred HHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHH
Q 014716 208 FWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT 286 (420)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~ 286 (420)
.+..++..++...........++.+.++. +.+....+...+...++..++.++.|+++||++||+. .+...+.++..+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~-~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP-SSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHHH
Confidence 34444444444444455667788888775 7776788888899999999999999999999977653 333444566666
Q ss_pred HHHHHHHHHh----------cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHH
Q 014716 287 MSVGHIVVAS----------GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRII 356 (420)
Q Consensus 287 ~~~~~l~l~~----------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~ 356 (420)
.+++++++.. .+...+.+..++.|++.+...+..++++.|.+|++.||++.|+.+....+|. .+++.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~-~i~~~~~ 442 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGS-ALNAQLV 442 (491)
T ss_dssp HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHH-HHHHHHG
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 6666554432 1344566778888999999899999999999999999999999999999999 5788888
Q ss_pred HHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014716 357 GYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRR 404 (420)
Q Consensus 357 g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~ 404 (420)
+.+.+. + +...|++.+++++++.++.++..++.++
T Consensus 443 ~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 443 TLYNAK-S------------EVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp GGGGGS-S------------TTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHhcc-c------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877653 3 6678888888888777666554444433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=159.66 Aligned_cols=197 Identities=11% Similarity=0.031 Sum_probs=131.4
Q ss_pred HhhCHHHHHHHHHH-HHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHH
Q 014716 202 SVCTLNFWLLFVAM-LCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 280 (420)
Q Consensus 202 ~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~ 280 (420)
.++.+......... +........+..+.+++.+..+.+...........++...++.++++++.||+ +||..+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~------Grr~~~ 345 (491)
T 4gc0_A 272 MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF------GRKPLQ 345 (491)
T ss_dssp HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CSHHHH
T ss_pred HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh------cCcchh
Confidence 33444444333333 33333444566677788888888877777777888899999999999999999 666777
Q ss_pred HHHHHHHHHHHHHHH----hcCchh-HHHHHHHHHHhhh-hhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhH
Q 014716 281 AITLATMSVGHIVVA----SGFPGN-LYVGSIIVGVCYG-CQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 354 (420)
Q Consensus 281 ~i~~~~~~~~~l~l~----~~~~~~-l~~~~~l~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 354 (420)
..+....+++++.+. ...... ..+...+...+++ ...+..+.+.+|+||++.|+++.|+.+..+.+++. +++.
T Consensus 346 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~-i~~~ 424 (491)
T 4gc0_A 346 IIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANY-FVSW 424 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHH-HHHT
T ss_pred ccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH-HHHH
Confidence 777776666665543 122222 2222233333333 33456778999999999999999999999999884 6677
Q ss_pred HHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 014716 355 IIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVL 411 (420)
Q Consensus 355 l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (420)
+.+.+.+.... .....+..+|++.+++++++.++.+++.+|||++..|+.+
T Consensus 425 ~~p~l~~~~~~------~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~ 475 (491)
T 4gc0_A 425 TFPMMDKNSWL------VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475 (491)
T ss_dssp HHHHHCHHHHH------HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred HHHHHHHHHHH------HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence 77665443210 0000044688999999999998888888899887655543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-14 Score=145.28 Aligned_cols=175 Identities=17% Similarity=0.191 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHHH------cCCCccchhHHHHHHHHHHHHhHhhhhhhhHh-HhhhcCCChhH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGES------LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDI-VLHRMGWERPS 278 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr-~~~~~~~~r~~ 278 (420)
+.+|..+...++.....+.+..+++.++++ +|.+..+.+++.+.+.++..++.+++|+++|| + +||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~------g~r~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII------GARP 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------CHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cchH
Confidence 456777777777766667777777777765 79999999999999999999999999999999 8 7778
Q ss_pred HHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCc--hHHHHHHHHHHhhhHHHHhhhHH
Q 014716 279 FIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGH--MGTIFNTIAIASPVGSYVCSVRI 355 (420)
Q Consensus 279 ~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~~~~~~l 355 (420)
.+.++.++.+++.+++. ..+...+++..++.|++.|...+...++++|.+|+++ |+.++++.+.+..+|. +++|.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~ 165 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGA-FIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHH-HHHHHH
Confidence 88999999888888877 5566778899999999999999999999999999988 8888888999999999 589999
Q ss_pred HHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 356 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 356 ~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
.+.+.+..+ |++.|++.++.+++++++.+...
T Consensus 166 ~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 166 VGAAQEAAG------------YHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHHHHSC------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999887 99999998887777776654443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=149.21 Aligned_cols=180 Identities=12% Similarity=0.073 Sum_probs=134.7
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-C---CCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCC
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-G---YPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW 274 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g---~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~ 274 (420)
.++.++++++|..++..++.......+..++|.++++. + .+....+...++..++..++.++.|+++||+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------ 286 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI------ 286 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 35678899998877665544444444556688777654 3 2233456677778888899999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHH-HHHhhhHHHHhh
Q 014716 275 ERPSFIAITLATMSVGHIVVAS-GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTI-AIASPVGSYVCS 352 (420)
Q Consensus 275 ~r~~~~~i~~~~~~~~~l~l~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~~~~ 352 (420)
+|+..+.++..+.+++.+.+.. .+...+.+..++.+++.+...+....+++|.+|++.||+++++. +.+..+|. +++
T Consensus 287 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~-~~g 365 (417)
T 2cfq_A 287 GGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAM-IFM 365 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHH-HHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHH-HHh
Confidence 6666677777777776665553 33444555566677777777777889999999999999999995 88888998 589
Q ss_pred hHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 014716 353 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 353 ~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
|.+.|.+.|..+ |...|.+.+++++++.++.+.
T Consensus 366 p~l~G~l~~~~g------------~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 366 SVLAGNMYESIG------------FQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp THHHHTHHHHSH------------HHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHHh
Confidence 999999999877 888999988888887765443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-15 Score=145.47 Aligned_cols=176 Identities=15% Similarity=0.087 Sum_probs=148.1
Q ss_pred CHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHH
Q 014716 205 TLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 284 (420)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~ 284 (420)
.+.++..++..++.......+...+|.+.++. .+..+.+++.+...++..++.+++|+++||+ +||.++.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~------g~r~~l~~~~ 99 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS------NPRVFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc------CchHHHHHHH
Confidence 34555666666666555556677788888899 9999999999999999999999999999999 7778888888
Q ss_pred HHHHHHHHHHHh-----cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHH
Q 014716 285 ATMSVGHIVVAS-----GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 359 (420)
Q Consensus 285 ~~~~~~~l~l~~-----~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l 359 (420)
++.+++.+++.. .+...+++..++.|++.+...+...+++.|.+|+++|+++.|+.+.+..+|. +++|.+.+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l 178 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG-GIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH-TSHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 888888877653 4566788899999999999999999999999999999999999999999999 5899999998
Q ss_pred HHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 360 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 360 ~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
.+..++ |+++|++.++++++..++.++..
T Consensus 179 ~~~~g~-----------w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 179 MAWFND-----------WHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHTCC-----------STTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHhcc-----------HHHHHHHHHHHHHHHHHHHHhhc
Confidence 877664 99999999888877766554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.58 E-value=8e-16 Score=147.98 Aligned_cols=163 Identities=14% Similarity=0.050 Sum_probs=126.5
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhH
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 278 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~ 278 (420)
++.+|++.+|...+..++.......+..+.|.+.++ .|+++.+++...+...++..+++++.|+++||++ ++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~------~~~ 266 (375)
T 2gfp_A 193 KTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFS------TLM 266 (375)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHH------HHH
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Confidence 567788899998888888777777788888888877 5999889999999999999999999999999984 322
Q ss_pred HHHHHHHH-HHHHHH--HHHh---cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhh
Q 014716 279 FIAITLAT-MSVGHI--VVAS---GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCS 352 (420)
Q Consensus 279 ~~~i~~~~-~~~~~l--~l~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~ 352 (420)
..+..+ ...+.. .... .+...+.+..++.|++.+..++...+++.|.+| +++|++.|+.+....+|. .++
T Consensus 267 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~-~~~ 342 (375)
T 2gfp_A 267 --WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGS-GVL 342 (375)
T ss_dssp --HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHH-HCC
T ss_pred --HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHH-HHH
Confidence 222222 222211 1111 233445567788899999999999999999999 899999999999999999 588
Q ss_pred hHHHHHHHHhhcCCCCCccccccccHHHHHHH
Q 014716 353 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIM 384 (420)
Q Consensus 353 ~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~ 384 (420)
|.+.|.+.+..+ |...+++.
T Consensus 343 ~~~~g~l~~~~~------------~~~~~~~~ 362 (375)
T 2gfp_A 343 ASLSAMLPQTGQ------------GSLGLLMT 362 (375)
T ss_dssp STTCTHHHHHHH------------HHHHHHHH
T ss_pred HHHHHHHhcCCc------------ccHHHHHH
Confidence 999999988766 77666654
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=134.83 Aligned_cols=180 Identities=11% Similarity=0.047 Sum_probs=140.1
Q ss_pred HHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHH
Q 014716 209 WLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMS 288 (420)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~ 288 (420)
+.+.+..++...........+|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+ +||+.+.++.++.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~------g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL------SYKAGIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh------cchHHHHHHHHHHH
Confidence 334444444444444566678888889999999999999999999999999999999999 77788999999998
Q ss_pred HHHHHH---H-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhc
Q 014716 289 VGHIVV---A-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 364 (420)
Q Consensus 289 ~~~l~l---~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g 364 (420)
++.++. . ..+...+++..++.|++.|...+...++++|.+|+++|+.+.|+.+.+..+|. +++|.+.+.+.+...
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA-IIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH-HHHHHHTTHHHHTSS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccc
Confidence 888877 4 45667788999999999999999999999999999999999999999999999 589999998883332
Q ss_pred CCCCC--------------ccccccccHHHHHHHHHHHHHHHHHH
Q 014716 365 SGEGN--------------SCNGTHCFMLSFLIMASVAFVGCLVA 395 (420)
Q Consensus 365 ~~~~~--------------~c~g~~~~~~~f~i~~~~~~~~~~~~ 395 (420)
+.... .....+.|++.|++.++++++..++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 10000 00001127888887777666655443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-13 Score=135.44 Aligned_cols=171 Identities=15% Similarity=0.138 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHHH-cC------CCccchhHHHHHHHHHHHHhHhhhhhhhHhH-hhhcCCChh
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGES-LG------YPTSAINSLVSLWSIWNFLGRFGGGYVSDIV-LHRMGWERP 277 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g------~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~-~~~~~~~r~ 277 (420)
+.+|.+++..++.....++...+++.++++ .| ++..+++++.+.+.++..++.+++|+++||+ |||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r------ 85 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY------ 85 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence 466777777777766666777778877664 58 9999999999999999999999999999998 643
Q ss_pred HHHHHHHHHHHHHHHHHH-hc-CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHH---HHHHhhhHHHHhh
Q 014716 278 SFIAITLATMSVGHIVVA-SG-FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNT---IAIASPVGSYVCS 352 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~-~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~~g~~~~~ 352 (420)
..+.++.++.+++.+++. .. +...+++..++.|++.+...+...+++.|.+|+++|++..+. .+.+..+|. +++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~-~~g 164 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS-FFA 164 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH-HHH
Confidence 556777777777777766 44 566788889999999999999999999999999999766655 888899998 588
Q ss_pred hHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHH
Q 014716 353 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 395 (420)
Q Consensus 353 ~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~ 395 (420)
|.+.|.+.+..+ |++.|++.+++.+++.++.
T Consensus 165 ~~~~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 165 SLSMPLLLKNFG------------AAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHTSTHHHHTSC------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc------------HHHHHHHHHHHHHHHHHHH
Confidence 999999988777 9999999888877666543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=131.86 Aligned_cols=165 Identities=13% Similarity=0.154 Sum_probs=138.1
Q ss_pred HHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHH
Q 014716 211 LFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVG 290 (420)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~ 290 (420)
+++..++.......+...+|.+.+++|.+..+.++..+...++..++.++.|+++||+| ||+.+.++..+.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g------~r~~~~~~~~~~~~~ 78 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVG------RRPVILVGMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSC------CCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CchhHHHHHHHHHHH
Confidence 34444555444555666788888888999999999999999999999999999999994 445567777777777
Q ss_pred HHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCC
Q 014716 291 HIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGN 369 (420)
Q Consensus 291 ~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~ 369 (420)
.+++. .++...+++..++.|++.+...+...+++.|.+|+++|+++.++.+.+..+|. +++|.+.+.+.+..+
T Consensus 79 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~----- 152 (375)
T 2gfp_A 79 TLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSP-LLAPLIGGLLDTMWN----- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHH-HHHHHHHHHSSCHHH-----
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhcc-----
Confidence 77665 45566788889999999999999999999999999999999999999999999 589999999988777
Q ss_pred ccccccccHHHHHHHHHHHHHHHHH
Q 014716 370 SCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 370 ~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
|++.|++.+++.++..+.
T Consensus 153 -------~~~~~~~~~~~~~~~~~~ 170 (375)
T 2gfp_A 153 -------WRACYLFLLVLCAGVTFS 170 (375)
T ss_dssp -------HHHHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHHHHHHHH
Confidence 999999888877776653
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-11 Score=124.17 Aligned_cols=150 Identities=11% Similarity=-0.001 Sum_probs=96.1
Q ss_pred chhHHHHHHHHHHHHhHhhhhhhh----HhHhhhcCCChhHHHHHHHHHHHHHHHHHHh----------cCchhHHHHHH
Q 014716 242 AINSLVSLWSIWNFLGRFGGGYVS----DIVLHRMGWERPSFIAITLATMSVGHIVVAS----------GFPGNLYVGSI 307 (420)
Q Consensus 242 ~~~~~~~~~~~~~~ig~~~~G~ls----Dr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~----------~~~~~l~~~~~ 307 (420)
..+.+.+...++..++.++.+++. ||.++|. +++..+.++.++.+++++++.. .+...+.+..+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL--TALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYA 413 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC--------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Confidence 355555555556666666666654 3332221 2334556677777777665542 13344667788
Q ss_pred HHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCcccccccc---------H
Q 014716 308 IVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCF---------M 378 (420)
Q Consensus 308 l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~---------~ 378 (420)
+.|++.+...+...+++.|.+|++.||+++|+.++...+|. .++|.+.|.+.+..+. .| +
T Consensus 414 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~-~~g~~~~g~~~~~~~~----------~~~~~~~~~~~~ 482 (524)
T 2xut_A 414 LLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGN-LWVLLANVSVKSPTVT----------EQIVQTGMSVTA 482 (524)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHH-HHHHHHHHHTTSCHHH----------HHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhcccccc----------cccccccccccc
Confidence 88999999999999999999999999999999999999999 5889999988774310 02 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014716 379 LSFLIMASVAFVGCLVAFLLFIRTRR 404 (420)
Q Consensus 379 ~~f~i~~~~~~~~~~~~~~~~~~~~~ 404 (420)
..|++.+++++++.++.+++.+++++
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (524)
T 2xut_A 483 FQMFFFAGFAILAAIVFALYARSYQM 508 (524)
T ss_dssp HHHHHHHHHHHHHHHHHC--------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34777777777777665555444443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-11 Score=119.43 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=114.9
Q ss_pred hccHHHHHHHcCC----C----ccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH--
Q 014716 226 VNNISQIGESLGY----P----TSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-- 295 (420)
Q Consensus 226 ~~~~~~~~~~~g~----s----~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-- 295 (420)
...+|.+.++.+. + +...+++.+.+.++..+|.+++|+++||+ |||+.+.++.+++.++.++.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~------GRk~~l~~~~~l~~i~~i~~a~~ 105 (491)
T 4gc0_A 32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF------GRRDSLKIAAVLFFISGVGSAWP 105 (491)
T ss_dssp GGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666554432 1 23456788889999999999999999999 788889999999998888765
Q ss_pred -----------------hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHH
Q 014716 296 -----------------SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGY 358 (420)
Q Consensus 296 -----------------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~ 358 (420)
..+...+++.+++.|++.|+..+..+.+++|..|++.|+...++.+.+..+|. +.++.+...
T Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~-~~~~~~~~~ 184 (491)
T 4gc0_A 106 ELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQ-LLVYCVNYF 184 (491)
T ss_dssp TTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhh-hhhhhcchh
Confidence 23456689999999999999999999999999999999999999999999998 466555554
Q ss_pred HHHhhcCCCCCccccccccHHHHHHHHHHHHHHH
Q 014716 359 IYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGC 392 (420)
Q Consensus 359 l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~ 392 (420)
+.+..+. .-.+...|+..+.+.....++..
T Consensus 185 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
T 4gc0_A 185 IARSGDA----SWLNTDGWRYMFASECIPALLFL 214 (491)
T ss_dssp HHTTSCT----TTTTTTHHHHHHHTTHHHHHHHH
T ss_pred hcccccc----ccccchhhHHHhhhhhhhhhhhh
Confidence 4433221 11122336666655544444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.3e-11 Score=117.67 Aligned_cols=171 Identities=15% Similarity=0.129 Sum_probs=111.9
Q ss_pred HHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 201 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
+.+|++++|.+....++.......+...+|.++++ .|+++.+++++.+...++..++++++|+++||+| ||+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~G------rr~~ 75 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLG------LRKY 75 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTST------TCCH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------chHH
Confidence 35789999988887777766666677788888876 5999999999999999999999999999999995 4444
Q ss_pred HHHHHHHHHHH---HHHHHh-cCc-hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCC--CchHHHHHHHHHHhhhHHHHhh
Q 014716 280 IAITLATMSVG---HIVVAS-GFP-GNLYVGSIIVGVCYGCQWSLMPTITYEIFGV--GHMGTIFNTIAIASPVGSYVCS 352 (420)
Q Consensus 280 ~~i~~~~~~~~---~l~l~~-~~~-~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~~ 352 (420)
+.++..+.+++ ...... ... ........+.+++.|..++.....+.+..++ ++++..+|..+.+..+|. .++
T Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~-~~~ 154 (417)
T 2cfq_A 76 LLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGW-ALG 154 (417)
T ss_dssp HHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHH-HHH
Confidence 55555444331 111110 000 0112223333333333333223333333322 356777888888888888 588
Q ss_pred hHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHH
Q 014716 353 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVG 391 (420)
Q Consensus 353 ~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~ 391 (420)
|.+.+.+.+ .+ |+..|++.++..++.
T Consensus 155 ~~l~~~l~~-~~------------~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 155 ASIVGIMFT-IN------------NQFVFWLGSGCALIL 180 (417)
T ss_dssp HHHHHHHHH-HC------------SHHHHTTTTTTTTTH
T ss_pred HHHHHHHHH-hc------------hhHHHHHHHHHHHHH
Confidence 999999887 45 888888766554433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 420 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.83 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.59 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.57 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.21 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=6.6e-19 Score=170.50 Aligned_cols=191 Identities=15% Similarity=0.187 Sum_probs=148.5
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChh
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 277 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~ 277 (420)
.++.++++.+|......++..........+.+.+.++. |++..+.+...++..++..+++++.|+++||++++ .+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~ 318 (447)
T d1pw4a_ 242 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG---NRG 318 (447)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT---CHH
T ss_pred HHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccc---ccc
Confidence 46678899999998888888888788888899988776 89999999999999999999999999999999765 333
Q ss_pred HHHHHHHHHHHHHHHHHH---hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhH
Q 014716 278 SFIAITLATMSVGHIVVA---SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 354 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~---~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 354 (420)
........+..++.+.+. ..+.....+..++.|++.+...+....+..|.+|++.+|++.|+.+....+++.+.+|.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~ 398 (447)
T d1pw4a_ 319 ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398 (447)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333322 12334456667778888888888899999999999999999999988877765568899
Q ss_pred HHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014716 355 IIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRR 404 (420)
Q Consensus 355 l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~ 404 (420)
+.|.+.|..| |+..|++.+++++++.++...+..++++
T Consensus 399 ~~g~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (447)
T d1pw4a_ 399 IVGYTVDFFG------------WDGGFMVMIGGSILAVILLIVVMIGEKR 436 (447)
T ss_dssp HHHHHHHSSC------------SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC------------hHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999988 8899999888888887766655444333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=1.1e-14 Score=137.67 Aligned_cols=147 Identities=12% Similarity=0.076 Sum_probs=122.0
Q ss_pred CccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhh
Q 014716 239 PTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQW 317 (420)
Q Consensus 239 s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~ 317 (420)
+....+...+...++..++..+.+++.||+ +++..+.++..+.+++.+.+. ..+...+++..++.|++.+...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 330 (417)
T d1pv7a_ 257 GTRVFGYVTTMGELLNASIMFFAPLIINRI------GGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHH------CHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcccccccccccccchhhhhhhhccc------ccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHH
Confidence 344566677788888999999999999999 677778888888888877776 4555667788888999999999
Q ss_pred hhHHHHHHHhhCCCchHHHHHHH-HHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHH
Q 014716 318 SLMPTITYEIFGVGHMGTIFNTI-AIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAF 396 (420)
Q Consensus 318 ~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~ 396 (420)
+...+++.|.+|++.||+..|+. +++..+|. .++|.+.|.+.|+.| |+.+|++.+++++++.++..
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~~~~~G~l~~~~g------------~~~~~~~~~~~~~~~~~~~~ 397 (417)
T d1pv7a_ 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAM-IFMSVLAGNMYESIG------------FQGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHH-HHHHHHHHHHHHHHC------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC------------HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999985 56778888 588999999999998 99999999988888877766
Q ss_pred HHHHHhHH
Q 014716 397 LLFIRTRR 404 (420)
Q Consensus 397 ~~~~~~~~ 404 (420)
+..+++++
T Consensus 398 ~~l~~~~~ 405 (417)
T d1pv7a_ 398 FTLSGPGP 405 (417)
T ss_dssp HHSCCSSC
T ss_pred HhhcCCCc
Confidence 65544443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=4.1e-15 Score=143.35 Aligned_cols=149 Identities=17% Similarity=0.128 Sum_probs=128.1
Q ss_pred HHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHHh-----cCchhHHHHH
Q 014716 232 IGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVAS-----GFPGNLYVGS 306 (420)
Q Consensus 232 ~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~-----~~~~~l~~~~ 306 (420)
+.++.|+|..+.+++.+.+.++..++.+++|+++||+ +||+.+.++.++.+++.++.+. .+...+++..
T Consensus 50 ~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~------g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (447)
T d1pw4a_ 50 YLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS------NPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 123 (447)
T ss_dssp HTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS------CHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHH
T ss_pred HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHH
Confidence 3456799999999999999999999999999999999 7778888888888888776542 3556788889
Q ss_pred HHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHH
Q 014716 307 IIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMAS 386 (420)
Q Consensus 307 ~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~ 386 (420)
++.|++.|..++...++++|.+|+++|+++.|+.+.+..+|. ++++.+.+.+.+..++ |++.|++.+.
T Consensus 124 ~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~i~~~~~~~~~~~~~~-----------w~~~~~~~~~ 191 (447)
T d1pw4a_ 124 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG-GIPPLLFLLGMAWFND-----------WHAALYMPAF 191 (447)
T ss_dssp HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH-TSHHHHHHHHHHHTCC-----------STTCTHHHHH
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhh-hhhhhhhhhHhhhhhc-----------ccccchhhhh
Confidence 999999999999999999999999999999999999999999 5888888888877665 8999998888
Q ss_pred HHHHHHHHHHHH
Q 014716 387 VAFVGCLVAFLL 398 (420)
Q Consensus 387 ~~~~~~~~~~~~ 398 (420)
++++..++.+..
T Consensus 192 ~~~~~~~~~~~~ 203 (447)
T d1pw4a_ 192 CAILVALFAFAM 203 (447)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 777766655444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=1.4e-11 Score=115.77 Aligned_cols=156 Identities=16% Similarity=0.105 Sum_probs=104.2
Q ss_pred HHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 201 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
+.+||+++|.+.+..++.......+...+|.++++ .|.|..+.+++.+...++..++.++.|+++||+ +||..
T Consensus 2 ~~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~------grr~~ 75 (417)
T d1pv7a_ 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL------GLRKY 75 (417)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH------TTCTH
T ss_pred CcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CchHH
Confidence 45799999999998888776666667778877765 599999999999999999999999999999999 45555
Q ss_pred HHHHHHHHHHHHHHHH-hcCc----hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCC--CchHHHHHHHHHHhhhHHHHhh
Q 014716 280 IAITLATMSVGHIVVA-SGFP----GNLYVGSIIVGVCYGCQWSLMPTITYEIFGV--GHMGTIFNTIAIASPVGSYVCS 352 (420)
Q Consensus 280 ~~i~~~~~~~~~l~l~-~~~~----~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~~ 352 (420)
+.++..+..++..++. .... ....+...+.+.+.+...........+...+ +.+....+........+. +.+
T Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 154 (417)
T d1pv7a_ 76 LLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGW-ALG 154 (417)
T ss_dssp HHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccc-ccc
Confidence 6666666666555444 2211 1123334444444444444443333333322 233445556666666666 577
Q ss_pred hHHHHHHHHhh
Q 014716 353 VRIIGYIYDNV 363 (420)
Q Consensus 353 ~~l~g~l~~~~ 363 (420)
+.+.+.+.+..
T Consensus 155 ~~~~~~l~~~~ 165 (417)
T d1pv7a_ 155 ASIVGIMFTIN 165 (417)
T ss_dssp HHHHHHHHHHC
T ss_pred ccccccccccc
Confidence 78888877654
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