Citrus Sinensis ID: 014763

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42

MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKVTYQFFTLFHYFEGKEKQIFQNINSLLSFSVTSVTI

ccccHHHHHHHcccccccccccEEEccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccEEEEEEc

ccccHHHHHHHEcccccccccEEEEccccccHHHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHcccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHcHHHcEEEEEEEc

mskcgyiarlelqpsisnlgydlklenfpggseTFEIILKFCyglpiafnpnniaplrcasefldmseeyedgnliskTEAFLTLVILSSWKETITVLKScknlspwaENLQIVRRCCDSIAWkasrensttedianrqgwwfddvatlGIDHFMRIITTIkvkgtkpeiIGKCIMHYAKKWlpgmdveleglrgygygkhELQFSILNAGKEEVSVGQKEQRTIIENLVNllphqdegvscKFFLQMLKMAMVYNASPALISELEKRVGMMLedanandllipnyknedhaklnspehntmhnIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAevardpnlsiTKFQVLAEslpenartcHDGLYRAIDTYLKVTYQFFTLFHYFEGKEKQIFQNINSLLSFSVTSVTI

MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWkasrensttedianrqgwwFDDVATLGIDHFMRIITTikvkgtkpeiIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAklnspehntmHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKVTYQFFTLFHYFEGKEKQIFQNINsllsfsvtsvti

MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHEqqqqqkqqNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKVTYQFFTLFHYFEGKEKQIFQNINSLLSFSVTSVTI

***CGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNY***************MHNIDVVQRIMDYFLM******************KILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKVTYQFFTLFHYFEGKEKQIFQNINSLLSFSV*****

*SKCGYI***************LKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDV*******************************KEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYK************NTMHNIDVVQRIMDY*********************KILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKVTYQFFT*********KQIFQNINSLLSFSVTSVTI

MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGK********EQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMH************KTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKVTYQFFTLFHYFEGKEKQIFQNINSLLSFSVTSVTI

**KCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENS******NRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMD*****************************VGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNED*AK**SPEHNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKVTYQFFTLFHYFEGKEKQIFQNINSLLSFSVTSVTI

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		419	2.2.26 [Sep-21-2011]
Q9LFU0		607	Putative BTB/POZ domain-c	yes	no	0.868	0.599	0.607	1e-135
Q5KS50		762	Coleoptile phototropism p	yes	no	0.840	0.461	0.392	1e-93
Q9FMF5		746	Root phototropism protein	no	no	0.871	0.489	0.390	2e-92
Q9S9Q9		665	BTB/POZ domain-containing	no	no	0.804	0.506	0.351	3e-65
Q9FNB3		591	Putative BTB/POZ domain-c	no	no	0.868	0.615	0.366	1e-64
Q9FN09		579	BTB/POZ domain-containing	no	no	0.789	0.571	0.341	4e-63
Q66GP0		604	BTB/POZ domain-containing	no	no	0.852	0.591	0.352	3e-62
Q9SA69		634	BTB/POZ domain-containing	no	no	0.842	0.556	0.369	1e-59
Q9SN21		526	Putative BTB/POZ domain-c	no	no	0.844	0.673	0.356	1e-59
Q94A73		668	BTB/POZ domain-containing	no	no	0.811	0.508	0.345	2e-58

>sp\|Q9LFU0\|DOT3_ARATH Putative BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=3 SV=1	Back alignment and function desciption

 Score =  483 bits (1242), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 235/387 (60%), Positives = 298/387 (77%), Gaps = 23/387 (5%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +SKCGYI+ +EL+PS S  GY LKLENFPGG++TFE ILKFCY LP+  NP N+APLRCA
Sbjct: 71  ISKCGYISSIELKPSTSENGYHLKLENFPGGADTFETILKFCYNLPLDLNPLNVAPLRCA 130

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           SE+L M+EE+E GNLISKTEAF+T V+L+SW++T+TVL+SC NLSPWAENLQIVRRCCD 
Sbjct: 131 SEYLYMTEEFEAGNLISKTEAFITFVVLASWRDTLTVLRSCTNLSPWAENLQIVRRCCDL 190

Query: 121 IAWKASRENSTTEDIANR-QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYA 179
           +AWKA  +N+  ED+ +R +   ++D+ATL IDHFMR+ITT+K +  KP+I GK IM YA
Sbjct: 191 LAWKACNDNNIPEDVVDRNERCLYNDIATLDIDHFMRVITTMKARRAKPQITGKIIMKYA 250

Query: 180 KKWLPGMDVELEGLRGYGYGKHELQFSILNAGK--EEVSVGQKEQRTIIENLVNLLPHQD 237
             +LP ++ +LEG++GYG GK+ELQFS+ N G+  E  S+G +E +  IE+LV++LP Q 
Sbjct: 251 DNFLPVINDDLEGIKGYGLGKNELQFSV-NRGRMEESNSLGCQEHKETIESLVSVLPPQS 309

Query: 238 EGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSP 297
             VSC F L+MLK ++VY+ASPALIS+LEKRVGM LEDAN  DLLIPN+KNE+  +    
Sbjct: 310 GAVSCHFLLRMLKTSIVYSASPALISDLEKRVGMALEDANVCDLLIPNFKNEEQQER--- 366

Query: 298 EHNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQ 357
                       RI ++FLMHEQQQ      +GK ++SK+LDNYLAE+A+DP L ITKFQ
Sbjct: 367 -----------VRIFEFFLMHEQQQV-----LGKPSISKLLDNYLAEIAKDPYLPITKFQ 410

Query: 358 VLAESLPENARTCHDGLYRAIDTYLKV 384
           VLAE LPENA  CHDGLYRAID +LK 
Sbjct: 411 VLAEMLPENAWKCHDGLYRAIDMFLKT 437

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q5KS50\|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1	Back alignment and function description

>sp\|Q9FMF5\|RPT3_ARATH Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2	Back alignment and function description

>sp\|Q9S9Q9\|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2	Back alignment and function description

>sp\|Q9FNB3\|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1	Back alignment and function description

>sp\|Q9FN09\|NPY3_ARATH BTB/POZ domain-containing protein NPY3 OS=Arabidopsis thaliana GN=NPY3 PE=2 SV=1	Back alignment and function description

>sp\|Q66GP0\|Y5738_ARATH BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2	Back alignment and function description

>sp\|Q9SA69\|Y1301_ARATH BTB/POZ domain-containing protein At1g03010 OS=Arabidopsis thaliana GN=At1g03010 PE=2 SV=1	Back alignment and function description

>sp\|Q9SN21\|Y3997_ARATH Putative BTB/POZ domain-containing protein At3g49970 OS=Arabidopsis thaliana GN=At3g49970 PE=3 SV=1	Back alignment and function description

>sp\|Q94A73\|Y5656_ARATH BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana GN=At5g66560 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		419
255580882		643	Root phototropism protein, putative [Ric	0.916	0.597	0.761	1e-177
224081144		540	predicted protein [Populus trichocarpa]	0.916	0.711	0.751	1e-171
429326652		637	transposase [Populus tomentosa]	0.906	0.596	0.738	1e-170
224093756		544	predicted protein [Populus trichocarpa]	0.906	0.698	0.738	1e-169
359497198		571	PREDICTED: putative BTB/POZ domain-conta	0.914	0.670	0.733	1e-168
359497580		556	PREDICTED: putative BTB/POZ domain-conta	0.878	0.661	0.705	1e-161
356528467		626	PREDICTED: putative BTB/POZ domain-conta	0.916	0.613	0.705	1e-158
296084654		489	unnamed protein product [Vitis vinifera]	0.852	0.730	0.703	1e-156
356511091		629	PREDICTED: putative BTB/POZ domain-conta	0.916	0.610	0.699	1e-156
296090702		459	unnamed protein product [Vitis vinifera]	0.854	0.779	0.696	1e-155

>gi\|255580882\|ref\|XP_002531260.1\| Root phototropism protein, putative [Ricinus communis] gi\|223529145\|gb\|EEF31124.1\| Root phototropism protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 294/386 (76%), Positives = 331/386 (85%), Gaps = 2/386 (0%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +SKCGYI RLELQPSISN GY+LKLENFPGGSE FEIILKFCYGLP+  NPNNIA LRCA
Sbjct: 92  VSKCGYIGRLELQPSISNFGYELKLENFPGGSEAFEIILKFCYGLPLDLNPNNIAALRCA 151

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           SEFL+MSEE EDGNLISKTEAFLT V+LSSWK+TITVLKSC+ LSPWAENLQIVRRCCDS
Sbjct: 152 SEFLEMSEELEDGNLISKTEAFLTFVVLSSWKDTITVLKSCETLSPWAENLQIVRRCCDS 211

Query: 121 IAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAK 180
           IAWKASR+NST  +I N +GWWFDDVATL  DHFMRI+T ++ KG KPEI GKCIMHYA 
Sbjct: 212 IAWKASRDNSTVHNIINEEGWWFDDVATLRTDHFMRIVTAVRAKGAKPEITGKCIMHYAS 271

Query: 181 KWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQ-KEQRTIIENLVNLLPHQDEG 239
           +WLPGMDVELEGLRGY YGK+ELQF IL    ++  VG  KEQ+ IIE++V LLP Q E 
Sbjct: 272 RWLPGMDVELEGLRGYRYGKNELQFGILCGRNKDEGVGHSKEQKNIIESIVRLLPPQPEA 331

Query: 240 VSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAK-LNSPE 298
           V CKF L+MLKMA+VY+ASPALISELE RVG+ LE+A+ NDLLIPNYK ED  K +  PE
Sbjct: 332 VPCKFLLKMLKMAIVYSASPALISELEMRVGLTLENASVNDLLIPNYKTEDQVKTMKHPE 391

Query: 299 HNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQV 358
           H  M+NI+VVQRI++YFLMHEQ+QQQ Q   GK+NVSK++DNYLAE+ARDPNLSITKFQV
Sbjct: 392 HCVMYNIEVVQRIVEYFLMHEQEQQQLQPMSGKSNVSKLMDNYLAEIARDPNLSITKFQV 451

Query: 359 LAESLPENARTCHDGLYRAIDTYLKV 384
           LAE LPENARTC DGLYR+IDTYLK 
Sbjct: 452 LAEVLPENARTCDDGLYRSIDTYLKT 477

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224081144\|ref\|XP_002306309.1\| predicted protein [Populus trichocarpa] gi\|222855758\|gb\|EEE93305.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|429326652\|gb\|AFZ78666.1\| transposase [Populus tomentosa]	Back alignment and taxonomy information

>gi\|224093756\|ref\|XP_002309978.1\| predicted protein [Populus trichocarpa] gi\|222852881\|gb\|EEE90428.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359497198\|ref\|XP_002262774.2\| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like, partial [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359497580\|ref\|XP_003635572.1\| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like, partial [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356528467\|ref\|XP_003532824.1\| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Glycine max]	Back alignment and taxonomy information

>gi\|296084654\|emb\|CBI25777.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356511091\|ref\|XP_003524263.1\| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Glycine max]	Back alignment and taxonomy information

>gi\|296090702\|emb\|CBI41104.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		419
TAIR\|locus:2145387		607	DOT3 "DEFECTIVELY ORGANIZED TR	0.725	0.500	0.593	9.4e-122
TAIR\|locus:2173418		746	NPH3 "NON-PHOTOTROPIC HYPOCOTY	0.245	0.138	0.640	3.5e-91
TAIR\|locus:2028160		665	AT1G30440 [Arabidopsis thalian	0.584	0.368	0.348	3.7e-60
TAIR\|locus:2200286		631	AT1G67900 [Arabidopsis thalian	0.694	0.461	0.340	5.4e-59
TAIR\|locus:2173204		591	AT5G13600 [Arabidopsis thalian	0.866	0.614	0.375	2.8e-57
TAIR\|locus:504954965		604	AT5G67385 [Arabidopsis thalian	0.849	0.589	0.358	3.3e-56
TAIR\|locus:2158182		579	NPY3 "NAKED PINS IN YUC MUTANT	0.343	0.248	0.368	1.6e-53
TAIR\|locus:2082132		651	AT3G44820 [Arabidopsis thalian	0.599	0.385	0.304	9.9e-53
TAIR\|locus:2143558		592	AT5G03250 [Arabidopsis thalian	0.522	0.369	0.316	1.1e-52
TAIR\|locus:2077763		617	AT3G08570 [Arabidopsis thalian	0.854	0.580	0.341	1.3e-50

TAIR\|locus:2145387 DOT3 "DEFECTIVELY ORGANIZED TRIBUTARIES 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 978 (349.3 bits), Expect = 9.4e-122, Sum P(2) = 9.4e-122
 Identities = 191/322 (59%), Positives = 247/322 (76%)

Query:     1 MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
             +SKCGYI+ +EL+PS S  GY LKLENFPGG++TFE ILKFCY LP+  NP N+APLRCA
Sbjct:    71 ISKCGYISSIELKPSTSENGYHLKLENFPGGADTFETILKFCYNLPLDLNPLNVAPLRCA 130

Query:    61 SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
             SE+L M+EE+E GNLISKTEAF+T V+L+SW++T+TVL+SC NLSPWAENLQIVRRCCD 
Sbjct:   131 SEYLYMTEEFEAGNLISKTEAFITFVVLASWRDTLTVLRSCTNLSPWAENLQIVRRCCDL 190

Query:   121 IAWKASRENSTTEDIANR-QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYA 179
             +AWKA  +N+  ED+ +R +   ++D+ATL IDHFMR+ITT+K +  KP+I GK IM YA
Sbjct:   191 LAWKACNDNNIPEDVVDRNERCLYNDIATLDIDHFMRVITTMKARRAKPQITGKIIMKYA 250

Query:   180 KKWLPGMDVELEGLRGYGYGKHELQFSILNAGK--EEVSVGQKEQRTIIENLVNLLPHQD 237
               +LP ++ +LEG++GYG GK+ELQFS+ N G+  E  S+G +E +  IE+LV++LP Q 
Sbjct:   251 DNFLPVINDDLEGIKGYGLGKNELQFSV-NRGRMEESNSLGCQEHKETIESLVSVLPPQS 309

Query:   238 EGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSP 297
               VSC F L+MLK ++VY+ASPALIS+LEKRVGM LEDAN  DLLIPN+KNE+  +    
Sbjct:   310 GAVSCHFLLRMLKTSIVYSASPALISDLEKRVGMALEDANVCDLLIPNFKNEEQQER--- 366

Query:   298 EHNTMHNIDVVQRIMDYFLMHE 319
                         RI ++FLMHE
Sbjct:   367 -----------VRIFEFFLMHE 377

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009416 "response to light stimulus" evidence=IEA;ISS

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

GO:0080022 "primary root development" evidence=IMP

TAIR\|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2200286 AT1G67900 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2158182 NPY3 "NAKED PINS IN YUC MUTANTS 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2082132 AT3G44820 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2077763 AT3G08570 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		419
pfam03000		249	pfam03000, NPH3, NPH3 family	5e-96

>gnl\|CDD\|217312 pfam03000, NPH3, NPH3 family	Back alignment and domain information

 Score =  287 bits (737), Expect = 5e-96
 Identities = 100/253 (39%), Positives = 149/253 (58%), Gaps = 41/253 (16%)

Query: 141 WWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGK 200
           WWF+D++ L ID F R+IT +K +G KPE+IG+ +MHYAKKWLPG               
Sbjct: 3   WWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPG--------------- 47

Query: 201 HELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPA 260
                  L+         ++EQR ++E +V+LLP +   VSC F  ++L+ A++  AS +
Sbjct: 48  -------LSRSGSSEEDSEEEQRALLETIVSLLPSEKGSVSCSFLFKLLRAAIILGASES 100

Query: 261 LISELEKRVGMMLEDANANDLLIPN-YKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHE 319
              ELE+R+G+ L+ A  +DLLIP+ Y  E+          T++++D+VQRI++ FL  +
Sbjct: 101 CREELERRIGLQLDQATLDDLLIPSGYSGEE----------TLYDVDLVQRILEVFLSRD 150

Query: 320 QQQQQK--------QQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCH 371
              Q            +     V+K++D YLAE+A DPNL ++KF  LAE++P++AR  H
Sbjct: 151 AATQSSDDEDSEASPSSSSLLKVAKLVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSH 210

Query: 372 DGLYRAIDTYLKV 384
           DGLYRAID YLK 
Sbjct: 211 DGLYRAIDIYLKA 223

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		419
PF03000		258	NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr	100.0
PF00651		111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	98.09
smart00225		90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	97.94
PHA03098		534	kelch-like protein; Provisional	97.82
KOG4441		571	consensus Proteins containing BTB/POZ and Kelch do	97.26
PHA02713		557	hypothetical protein; Provisional	96.92
PHA02790		480	Kelch-like protein; Provisional	96.58
PF11822		317	DUF3342: Domain of unknown function (DUF3342); Int	90.89
smart00512		104	Skp1 Found in Skp1 protein family. Family of Skp1	82.8

>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana	Back alignment and domain information

Probab=100.00  E-value=5.7e-86  Score=640.95  Aligned_cols=246  Identities=42%  Similarity=0.757  Sum_probs=220.1

Q ss_pred             CCceehhccccChHHHHHHHHHHHhcCCCchhHHHHHHHhhhhhcCCCccccccccCCCCCCcchhhhhhccCCcccccc
Q 014763          139 QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVG  218 (419)
Q Consensus       139 ~dWW~eDl~~L~~~~f~rvI~am~~~g~~~~~i~~~l~~Ya~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (419)
                      +|||||||+.|++++|+|||.+|+++||+|++||++|+|||+||+|++.++..+....               ....+..
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~---------------~~~~~~~   65 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSS---------------AESSTSS   65 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccccccccc---------------ccccchh
Confidence            5899999999999999999999999999999999999999999999985541111100               1223356


Q ss_pred             hhhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccccccccccCCCCccccccCCCC
Q 014763          219 QKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPE  298 (419)
Q Consensus       219 ~~~qr~llE~iv~LLP~ek~~vsc~FLf~LLR~A~~l~as~~cr~~LE~rIg~qLd~AtldDLLIPs~~~~~~~~~~~~~  298 (419)
                      ..+||.+||+||+|||.+++++||+|||+|||+|+++|||++||.+||+|||+|||||||||||||+ ++.++       
T Consensus        66 ~~~~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~-~~~~~-------  137 (258)
T PF03000_consen   66 ENEQRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS-SPSGE-------  137 (258)
T ss_pred             HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC-CCCcc-------
Confidence            7899999999999999999999999999999999999999999999999999999999999999999 33322       


Q ss_pred             CCcccchHHHHHHHHHHHhhhhhh----------hhhccchhhhhhhhchhhhhhhhcCCCCCChhHHHHHHHhcCCCcc
Q 014763          299 HNTMHNIDVVQRIMDYFLMHEQQQ----------QQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENAR  368 (419)
Q Consensus       299 ~~tlYDVd~V~Ril~~Fl~~~~~~----------~~~~~~~~l~~VakLvD~YLaEiA~D~nL~~~kF~~Lae~lPd~AR  368 (419)
                       +|+||||+|+|||++||.+++..          ...++.+++.+||||||+||+|||+|+||+|+||++|||++|++||
T Consensus       138 -~t~yDVd~V~riv~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR  216 (258)
T PF03000_consen  138 -DTLYDVDLVQRIVEHFLSQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSAR  216 (258)
T ss_pred             -cchhhHHHHHHHHHHHHhcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhh
Confidence             29999999999999999984321          1125678999999999999999999999999999999999999999


Q ss_pred             ccCCchHHHHHHHHhhccCccccccccchhhHHHHHhhhcccceeee
Q 014763          369 TCHDGLYRAIDTYLKVTYQFFTLFHYFEGKEKQIFQNINSLLSFSVT  415 (419)
Q Consensus       369 ~~hDgLYrAIDiYLk~Hp~ls~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (419)
                      ++|||||||||||||+||+++       ++||+.||++|||.|||..
T Consensus       217 ~~hD~LYrAID~YLk~Hp~ls-------~~Er~~lC~~ldc~KLS~E  256 (258)
T PF03000_consen  217 PSHDGLYRAIDIYLKAHPGLS-------EEERKRLCRLLDCQKLSPE  256 (258)
T ss_pred             hccchHHHHHHHHHHHcccCC-------HHHHHHHHhhCCcccCCcc
Confidence            999999999999999999999       9999999999999999964

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins	Back alignment and domain information

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac	Back alignment and domain information

>PHA03098 kelch-like protein; Provisional	Back alignment and domain information

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>PHA02713 hypothetical protein; Provisional	Back alignment and domain information

>PHA02790 Kelch-like protein; Provisional	Back alignment and domain information

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised	Back alignment and domain information

>smart00512 Skp1 Found in Skp1 protein family	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		419
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 64/408 (15%), Positives = 125/408 (30%), Gaps = 120/408 (29%)

Query: 35  FEI-ILKFCYG--LPIAFNPNNIAPLRCASEFLDM------SEEYED----GNLISKTEA 81
           FE    ++ Y   L + F    +    C  +  DM       EE +      + +S T  
Sbjct: 9   FETGEHQYQYKDILSV-FEDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTL- 65

Query: 82  FLTLVILSSWKETI-----TVLKSCKNLSPW-AENLQIVRRCCDSIAWKASRENSTTEDI 135
            L   +LS  +E +      VL+   N   +    ++  +R              T   I
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLR--INY-KFLMSPIKTEQR---------QPSMMTRMYI 113

Query: 136 ANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWL----PGMDVELE 191
             R   + D+          ++     V  ++ +   K      ++ L    P  +V ++
Sbjct: 114 EQRDRLYNDN----------QVFAKYNV--SRLQPYLK-----LRQALLELRPAKNVLID 156

Query: 192 GLRGYGYGKHELQFSILNAGKEE---------VSVGQ-KEQRTIIENLVNLLPHQDEGVS 241
           G+   G GK  +   +  + K +         +++       T++E L  LL +Q +   
Sbjct: 157 GVL--GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNW 213

Query: 242 CKFFLQMLKMAMVYNASPALISELEKRVGMMLEDAN-ANDLLIPNYKNEDHAKLNSPEHN 300
                    +          I  ++  +  +L+     N LL+                 
Sbjct: 214 TSRSDHSSNI-------KLRIHSIQAELRRLLKSKPYENCLLV----------------- 249

Query: 301 TMHNIDVVQ--RIMDYF------LMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLS 352
               +  VQ  +  + F      L+  + +Q        T     LD++   +  D   S
Sbjct: 250 ----LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 353 I-TKF-QVLAESLPENARTCH------------DGLYRAIDTYLKVTY 386
           +  K+     + LP    T +            DGL    D +  V  
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNC 352

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		419
3i3n_A		279	Kelch-like protein 11; structural genomics, BTB, K	98.66
3hve_A		256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	98.57
2vkp_A		109	BTB/POZ domain-containing protein 6; protein-bindi	98.42
1buo_A		121	POZ domain, protein (promyelocytic leukemia zinc f	98.37
2if5_A		120	Zinc finger and BTB domain-containing protein 7A;	98.34
3b84_A		119	Zinc finger and BTB domain-containing protein 48;	98.32
3htm_A		172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	98.31
2vpk_A		116	Myoneurin; transcription regulation, transcription	98.26
1r29_A		127	B-cell lymphoma 6 protein; BTB domain, transcripti	98.23
2ppi_A		144	Gigaxonin; BTB domain, protein degradation, struct	98.2
2yy9_A		135	Zinc finger and BTB domain-containing protein 48;	98.17
4eoz_A		145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	98.16
3ga1_A		129	Nucleus accumbens-associated protein 1; BTB/POZ do	98.15
2q81_A		119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	98.14
2z8h_A		138	Transcription regulator protein BACH1; BTB, POZ, d	98.14
3ohu_A		125	Transcription regulator protein BACH2; BTB/POZ dom	98.05
2ihc_A		124	Transcription regulator protein BACH1; BRIC-A-BRAC	97.84
3m5b_A		119	Zinc finger and BTB domain-containing protein 32;	97.8
3hqi_A		312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	97.76
3fkc_A		116	Transcriptional regulator kaiso; zinc finger and B	97.72
4ajy_C		97	Transcription elongation factor B polypeptide 1; E	96.41
2ast_A		159	S-phase kinase-associated protein 1A; SCF-substrat	96.28
2p1m_A		160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	93.18
1fs1_B		141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	93.13
3v7d_A		169	Suppressor of kinetochore protein 1; WD 40 domain,	84.62
2fnj_C		96	Transcription elongation factor B polypeptide 1; b	83.92

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A	Back alignment and structure

Probab=98.66  E-value=2.4e-08  Score=95.66  Aligned_cols=199  Identities=10%  Similarity=0.140  Sum_probs=133.8

Q ss_pred             ccccHHHHHHcCCCCCCCccceEecCC----CCChHHHHHHHHhhcCCccccCCcchHHHHhhhhhhcCccccCCCchHH
Q 014763            2 SKCGYIARLELQPSISNLGYDLKLENF----PGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLIS   77 (419)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~L~df----PGG~eaFELvakFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NL~~   77 (419)
                      ++|.||+.++...-.+....+|.|+++    .-.+++|+.+.+|+|++++.+++.||..+-.||.+|+|.+      |..
T Consensus        56 a~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~------L~~  129 (279)
T 3i3n_A           56 AATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIR------LKE  129 (279)
T ss_dssp             HHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHH------HHH
T ss_pred             HcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHH------HHH
Confidence            478999999875432224458899877    4578999999999999999999999999999999999985      999


Q ss_pred             HHHHHhhhhhccChHHHHHHHhhhccccchhhhhh---hHHHHHHHHHHHhccCCccccccccCCCceehhccccChHHH
Q 014763           78 KTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQ---IVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHF  154 (419)
Q Consensus        78 ~tE~fL~~~v~~sW~dsi~vL~sce~llp~AE~l~---Iv~RCidsla~ka~~~~~~~~~~~~~~dWW~eDl~~L~~~~f  154 (419)
                      ..+.||.+.+-.         .+|-.++.+|+..+   +.++|.+-|+.....       +     +--++...||.+..
T Consensus       130 ~c~~~L~~~l~~---------~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~-------v-----~~~~~f~~L~~~~l  188 (279)
T 3i3n_A          130 FCGEFLKKKLHL---------SNCVAIHSLAHMYTLSQLALKAADMIRRNFHK-------V-----IQDEEFYTLPFHLI  188 (279)
T ss_dssp             HHHHHHHHHCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHH-------H-----TTSSGGGGSCHHHH
T ss_pred             HHHHHHHHcCCc---------chHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-------H-----hcCcChhcCCHHHH
Confidence            999999885432         24555555666554   677787777544310       0     11245668888877


Q ss_pred             HHHHHHHHhcC--CC-chhHHHHHHHhhhhhcCCCccccccccCCCCCCcchhhhhhccCCcccccchhhhHHHHHHHHH
Q 014763          155 MRIITTIKVKG--TK-PEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVN  231 (419)
Q Consensus       155 ~rvI~am~~~g--~~-~~~i~~~l~~Ya~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llE~iv~  231 (419)
                      ..++.   +..  ++ +..|-.+++.|++.-.+                                    +.+..+   ..
T Consensus       189 ~~lL~---~d~L~v~sE~~vf~av~~W~~~~~~------------------------------------~r~~~~---~~  226 (279)
T 3i3n_A          189 RDWLS---DLEITVDSEEVLFETVLKWVQRNAE------------------------------------ERERYF---EE  226 (279)
T ss_dssp             HHHHT---CSSCCCSCHHHHHHHHHHHHHTTHH------------------------------------HHTTTH---HH
T ss_pred             HHHhc---CcCCCCCCHHHHHHHHHHHHHcCHH------------------------------------HHHHHH---HH
Confidence            66654   333  33 55677777665542100                                    011122   23


Q ss_pred             hCCCCC-CcccHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 014763          232 LLPHQD-EGVSCKFFLQMLKMAMVYNASPALISELEKRV  269 (419)
Q Consensus       232 LLP~ek-~~vsc~FLf~LLR~A~~l~as~~cr~~LE~rI  269 (419)
                      ||..=| ..+|..+|..+++..-.+..++.|+.-+..-.
T Consensus       227 ll~~VRf~l~~~~~L~~~v~~~~l~~~~~~c~~~l~ea~  265 (279)
T 3i3n_A          227 LFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAV  265 (279)
T ss_dssp             HHTTSCGGGSCHHHHHHTTTTSHHHHTCHHHHHHHHHHH
T ss_pred             HHHhcCCCCCCHHHHHHHhhccchhcCCHHHHHHHHHHH
Confidence            444333 45889999999888888889999988776543

PyMOL of 3i3n

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B	Back alignment and structure

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}	Back alignment and structure

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A	Back alignment and structure

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A	Back alignment and structure

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}	Back alignment and structure

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}	Back alignment and structure

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}	Back alignment and structure

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A	Back alignment and structure

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}	Back alignment and structure

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}	Back alignment and structure

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}	Back alignment and structure

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}	Back alignment and structure

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A	Back alignment and structure

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}	Back alignment and structure

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A	Back alignment and structure

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}	Back alignment and structure

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0	Back alignment and structure

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A	Back alignment and structure

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A	Back alignment and structure

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*	Back alignment and structure

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*	Back alignment and structure

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D	Back alignment and structure

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*	Back alignment and structure

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		419
d1buoa_		121	Promyelocytic leukaemia zinc finger (PLZF) protein	98.47
d1r29a_		122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	98.46
d1hv2a_		99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	80.35

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=8.2e-08  Score=80.17  Aligned_cols=72  Identities=18%  Similarity=0.278  Sum_probs=64.3

Q ss_pred             ccccHHHHHHcCCCCCCCccceEecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhhhhhcCccccCCCchHHHHHH
Q 014763            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA   81 (419)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~L~dfPGG~eaFELvakFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NL~~~tE~   81 (419)
                      ++|.||+.++.+     +..++.+++++  |++|+.+.+|+|.+++++++.|+..+..||++|+|.+      |.+..+.
T Consensus        49 a~S~~F~~lf~~-----~~~~i~~~~v~--~~~f~~ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~------L~~~C~~  115 (121)
T d1buoa_          49 CTSKMFEILFHR-----NSQHYTLDFLS--PKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEY------LEEQCLK  115 (121)
T ss_dssp             HHCHHHHHHTTS-----CCSEEEECSSC--HHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHH------HHHHHHH
T ss_pred             ccChhhhhhccC-----ccceeecCCCC--HHHHHHHHHheEccccCCcHHHHHHHHHHHHHhCCHH------HHHHHHH
Confidence            579999999864     23478888875  8999999999999999999999999999999999996      9999999


Q ss_pred             Hhhhh
Q 014763           82 FLTLV   86 (419)
Q Consensus        82 fL~~~   86 (419)
                      ||+++
T Consensus       116 ~L~~i  120 (121)
T d1buoa_         116 MLETI  120 (121)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            99864

PyMOL of d1buoa_

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure