Citrus Sinensis ID: 014788

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
MAAKSPVKEPPGTSAVNPTTPLAPPPVKPELPSSSEPDVVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKTLKWEDKETKSSAASAESSSALKETSKRLCNGCKTLCTIACFACDKYDLTLCARCYVRGNHRVGVSSSDFRRVEISEEARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVAARAAVTTLSDVDDRASKGSLMRNTRQQEAGVASNGDATQNALARASVDASSLIEKEELDVEKAISGIVEVQVRKILGHFFCHIQL
cccccccccccccccccccccccccccccccccccccccEEccccccccccccccHHHHHHcHHccccccccccHHHHHHHHHHHHHHHHHcccccEEHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHcccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
ccccccccccccccccccccccccccccccccccccccEEEEcccccHcccccHHHHHHHHcHHHHccccccccHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEccccEEEEEEEEEEHHHHHHHHccccccccccccccccccccHHcccccHHHHHHHHHccccccccccccHcccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
maakspvkeppgtsavnpttplapppvkpelpsssepdvvnvpsysrwfsfdsisecevkflpeffdsrspsknprvyrYYRDSIVKHyrenpsrkitftDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKtlkwedketkssaasaesSSALKETSKRLCNGCktlctiacfacdkydltlcarcyvrgnhrvgvsssdfrrveiseearsdwtEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFiklpfgqefickesdsedvdnkffsinnpsdavsesenvgatspskrmrltpladasnpIMAQAAFLSALAGVEIAEVAARAAVTTlsdvddraskgslmrntrqqeagvasngdaTQNALARASVDASSLIEKEELDVEKAISGIVEVQVRKILGHFFCHIQL
maakspvkeppgtsavnpttplapPPVKPELPSSSEPDVVNVPSYSRWFSFDSISECEVKFLpeffdsrspsknprvYRYYRDSivkhyrenpsrkitftdvrrtlvgdvgSIRRVFDFLETWGLINYFASVKTLKWEDKETkssaasaesssalkETSKRLCNGCKTLCTIACFACDKYDLTLCARCYVRgnhrvgvsssdfrrveiseearsdwtekeTLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSinnpsdavsesenvgatspskrmrLTPLADASNPIMAQAAFLSALAGVEIAEVAARAAvttlsdvddraskgslmrntrqqeagvasngdaTQNALARASVDASSLIEKEELDVEKAISGIVEVQVRKILGHFFCHIQL
MAAKSPVKEPPGTSavnpttplapppvkpelpsssepDVVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKTLKWedketkssaasaesssalketskRLCNGCKTLCTIACFACDKYDLTLCARCYVRGNHRVGVSSSDFRRVEISEEARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALagveiaevaaraavTTLSDVDDRASKGSLMRNTRQQEAGVASNGDATQNALARASVDASSLIEKEELDVEKAISGIVEVQVRKILGHFFCHIQL
***************************************VNVPSYSRWFSFDSISECEVKFLPEFFD*******PRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKTLKW***********************RLCNGCKTLCTIACFACDKYDLTLCARCYVRGNHRVGVSSSDFRRVEI******DWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICK***********************************************IMAQAAFLSALAGVEIAEVAARAAVTTL*************************************************LDVEKAISGIVEVQVRKILGHFFCHI**
***************************************VNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKTLKWEDKETKSSAA**E**SALKETSKRLCNGCKTLCTIACFACDKYDLTLCA*****************************WTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFIC**********************************************NPIMAQAAFLSALAGVEIAEVA***********************************************************VEKAISGIVEVQVRKILGHFFCHIQL
****************NPTTPLAP**************VVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKTLKW*********************SKRLCNGCKTLCTIACFACDKYDLTLCARCYVRGNHRVGVSSSDFRRVEISEEARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSD**************KRMRLTPLADASNPIMAQAAFLSALAGVEIAEVAARAAVTTLSDVDDRASKGSLMRN**************TQNALARASVDASSLIEKEELDVEKAISGIVEVQVRKILGHFFCHIQL
*********************************SSEPDVVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKTLKWEDKETKSSAASAESSSALKETSKRLCNGCKTLCTIACFACDKYDLTLCARCYVRGNHRV*VSSS*F*********RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFIC*********************************SKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVAARAAVTTLSDVDDRASKGSLMRNTR**EA*********QNALARAS**ASSLIEKEELDVEKAISGIVEVQVRKILGHFFCHIQL
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MAAKSPVKEPPGTSAVNPTTPLAPPPVKPELPSSSEPDVVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKTLKWEDKETKSSAASAESSSALKETSKRLCNGCKTLCTIACFACDKYDLTLCARCYVRGNHRVGVSSSDFRRVEISEEARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVAARAAVTTLSDVDDRASKGSLMRNTRQQEAGVASNGDATQNALARASVDASSLIEKEELDVEKAISGIVEVQVRKILGHFFCHIQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query418 2.2.26 [Sep-21-2011]
Q84JG2469 SWI/SNF complex subunit S yes no 0.976 0.869 0.582 1e-129
Q9XI07 807 SWI/SNF complex subunit S no no 0.918 0.475 0.260 2e-38
Q8W475512 SWI/SNF complex subunit S no no 0.684 0.558 0.298 4e-34
P32591 825 SWI/SNF complex subunit S yes no 0.693 0.351 0.268 1e-32
O14470503 SWI/SNF and RSC complexes yes no 0.521 0.433 0.309 5e-32
Q6PDG5 1213 SWI/SNF complex subunit S yes no 0.705 0.243 0.289 2e-30
Q8TAQ2 1214 SWI/SNF complex subunit S yes no 0.705 0.242 0.289 2e-30
P43609557 Chromatin structure-remod no no 0.538 0.403 0.298 1e-27
P97496 1104 SWI/SNF complex subunit S no no 0.605 0.229 0.287 2e-24
Q92922 1105 SWI/SNF complex subunit S no no 0.605 0.228 0.287 3e-24
>sp|Q84JG2|SWI3B_ARATH SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1 SV=1 Back     alignment and function desciption
 Score =  462 bits (1188), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 250/429 (58%), Positives = 320/429 (74%), Gaps = 21/429 (4%)

Query: 1   MAAKSPVKEPPGTSAVNPTTP---------LAPPPVKPELPSSS-EPDVVNVPSYSRWFS 50
           MA K+P  +P G+  + P+TP          A      +LPSSS + D ++VPSYS WFS
Sbjct: 1   MAMKAP--DPGGSGEILPSTPSLSETTSGGAAAASKSAQLPSSSSDIDNIHVPSYSSWFS 58

Query: 51  FDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDV 110
           +  I++CEV+ LPEFFDSRS SKNP+ Y Y R+SI+K YR++  RKI+FTDVRRTLV DV
Sbjct: 59  WTDINDCEVRSLPEFFDSRSSSKNPKFYLYLRNSIIKQYRDDHPRKISFTDVRRTLVSDV 118

Query: 111 GSIRRVFDFLETWGLINY--FASVKTLKWEDKETKSSA--ASAESSSALKETSKRLCNGC 166
            SIRRVFDFL++WGLINY   AS K LKWE+KE   SA  A++E ++ +KET+KR CNGC
Sbjct: 119 VSIRRVFDFLDSWGLINYNSSASAKPLKWEEKEAGKSAGDAASEPATTVKETAKRNCNGC 178

Query: 167 KTLCTIACFACDKYDLTLCARCYVRGNHRVGVSSSDFRRVEISEEARSDWTEKETLQLLE 226
           K +C+IACFACDKYDLTLCARCYVR N+RVG++SS+F+RVEISEE++ +W++KE L LLE
Sbjct: 179 KAICSIACFACDKYDLTLCARCYVRSNYRVGINSSEFKRVEISEESKPEWSDKEILLLLE 238

Query: 227 AIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDA 286
           A+MH+GDDW+KVA HV G++EKDC++ F+KLPFG++F+ KESDSED    F  I +    
Sbjct: 239 AVMHYGDDWKKVASHVIGRTEKDCVSQFVKLPFGEQFV-KESDSEDGLEMFDQIKDSDIP 297

Query: 287 VSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVAARAAVTTLSDVDD 346
            SE  +   +SP+KR++LTPLADASNPIMAQAAFLSALAG  +AE AARAAV  LSDVD 
Sbjct: 298 ESEGIDKDGSSPNKRIKLTPLADASNPIMAQAAFLSALAGTNVAEAAARAAVRALSDVDY 357

Query: 347 RASKGSLMRNTRQQEAGVASNGDATQNALARASVDASSLIEKEELDVEKAISGIVEVQVR 406
            A K +  R+  +Q+A  AS+G+ T+N   RA  DA SLIEKEE +VE AI   VEV+++
Sbjct: 358 EADKNA-SRDPNRQDANAASSGETTRNESERAWADAKSLIEKEEHEVEGAIKETVEVEMK 416

Query: 407 KI---LGHF 412
           KI   + HF
Sbjct: 417 KIRDRIVHF 425
Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. May play an essential role in the transition from the vegetative to the reproductive phase of development. May be a positive regulator of ABA signaling.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1 SV=1 Back     alignment and function description
>sp|Q8W475|SWI3A_ARATH SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1 SV=1 Back     alignment and function description
>sp|P32591|SWI3_YEAST SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWI3 PE=1 SV=1 Back     alignment and function description
>sp|O14470|SSR2_SCHPO SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssr2 PE=1 SV=3 Back     alignment and function description
>sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1 SV=2 Back     alignment and function description
>sp|Q8TAQ2|SMRC2_HUMAN SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1 SV=1 Back     alignment and function description
>sp|P43609|RSC8_YEAST Chromatin structure-remodeling complex protein RSC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSC8 PE=1 SV=1 Back     alignment and function description
>sp|P97496|SMRC1_MOUSE SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1 SV=2 Back     alignment and function description
>sp|Q92922|SMRC1_HUMAN SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query418
225457648492 PREDICTED: SWI/SNF complex subunit SWI3B 0.973 0.827 0.600 1e-143
224061835500 chromatin remodeling complex subunit [Po 0.959 0.802 0.606 1e-135
356517915491 PREDICTED: SWI/SNF complex subunit SWI3B 0.916 0.780 0.626 1e-131
356508475484 PREDICTED: SWI/SNF complex subunit SWI3B 0.911 0.787 0.615 1e-128
255576209482 DNA binding protein, putative [Ricinus c 0.897 0.778 0.615 1e-127
30685774469 SWI/SNF complex subunit SWI3B [Arabidops 0.976 0.869 0.582 1e-127
2459441432 putative SWI/SNF complex subunit SW13 [A 0.968 0.937 0.586 1e-126
297823155468 ATSWI3B [Arabidopsis lyrata subsp. lyrat 0.976 0.871 0.584 1e-126
449485249 555 PREDICTED: SWI/SNF complex subunit SWI3B 0.928 0.699 0.557 1e-124
449455734493 PREDICTED: SWI/SNF complex subunit SWI3B 0.930 0.789 0.558 1e-124
>gi|225457648|ref|XP_002275451.1| PREDICTED: SWI/SNF complex subunit SWI3B [Vitis vinifera] gi|297745602|emb|CBI40767.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 262/436 (60%), Positives = 330/436 (75%), Gaps = 29/436 (6%)

Query: 1   MAAKSPVKEPPG------------TSAVNPTTPLAPP------PVKPELPSSSEPDVVNV 42
           MAA+SP+K+P G            +S++ PT     P      P    +P +SEP+ +N+
Sbjct: 1   MAAQSPIKDPIGASTETLTQQPDSSSSIIPTVKSEIPVAASASPSVGIVPRASEPETINI 60

Query: 43  PSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDV 102
           PSYSRWFS++++ ECEV+FLPEFFD+RSPSKNPRVY+YYR+SI+  +R+NPSRK+TFTDV
Sbjct: 61  PSYSRWFSWNNVHECEVRFLPEFFDARSPSKNPRVYKYYRNSIILSFRQNPSRKLTFTDV 120

Query: 103 RRTLVGDVGSIRRVFDFLETWGLINYFASV--KTLKWEDKETKSSAASAESSSALKET-- 158
           R+ LVGDVGSIRRVFDFLE WGLINY  S   + LKWE+K+ KS  AS+ +  A      
Sbjct: 121 RKILVGDVGSIRRVFDFLEAWGLINYSGSALKQPLKWEEKDNKSGGASSHTGDAGGGAVE 180

Query: 159 ---SKRLCNGCKTLCTIACFACDKYDLTLCARCYVRGNHRVGVSSSDFRRVEISEEARSD 215
               +R C+GCK+LC+IACFACDK+DLTLCARCYVRGN+RVGV+SSDFRRVEISE+ ++ 
Sbjct: 181 SIPKRRWCSGCKSLCSIACFACDKFDLTLCARCYVRGNYRVGVNSSDFRRVEISEDTKAG 240

Query: 216 WTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDN 275
           WT+KETL LLEA++H+GDDW+KVA+HV G++EK+C+THFIKL FG++++   S S DVDN
Sbjct: 241 WTDKETLHLLEAVLHYGDDWKKVAEHVGGRNEKECVTHFIKLSFGEQYLGHTS-SGDVDN 299

Query: 276 KFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVAAR 335
           KF    + SDA    EN+G +S SK+MRLTPL+DASNPIMAQAAFLSAL GVE+AE AAR
Sbjct: 300 KFSQAKDQSDAGFGQENIGTSSASKKMRLTPLSDASNPIMAQAAFLSALVGVEVAEAAAR 359

Query: 336 AAVTTLSDVDDRASK---GSLMRNTRQQEAGVASNGDATQNALARASVDASSLIEKEELD 392
           AAV +LSDVD R  K   GS     R Q+  V SNG+ T N L  A VDA SL+E+EELD
Sbjct: 360 AAVASLSDVDPRKMKEGLGSFANGARIQDPNVESNGNTTSNVLEGAYVDAKSLLEREELD 419

Query: 393 VEKAISGIVEVQVRKI 408
           VE+AISGI EVQ+++I
Sbjct: 420 VERAISGITEVQMKEI 435

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224061835|ref|XP_002300622.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222842348|gb|EEE79895.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356517915|ref|XP_003527631.1| PREDICTED: SWI/SNF complex subunit SWI3B-like [Glycine max] Back     alignment and taxonomy information
>gi|356508475|ref|XP_003522982.1| PREDICTED: SWI/SNF complex subunit SWI3B-like [Glycine max] Back     alignment and taxonomy information
>gi|255576209|ref|XP_002528998.1| DNA binding protein, putative [Ricinus communis] gi|223531538|gb|EEF33368.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|30685774|ref|NP_180919.2| SWI/SNF complex subunit SWI3B [Arabidopsis thaliana] gi|75327834|sp|Q84JG2.1|SWI3B_ARATH RecName: Full=SWI/SNF complex subunit SWI3B; Short=AtSWI3B; AltName: Full=Transcription regulatory protein SWI3B gi|28393376|gb|AAO42112.1| putative SWI/SNF complex subunit SW13 [Arabidopsis thaliana] gi|28827566|gb|AAO50627.1| putative SWI/SNF complex subunit SW13 [Arabidopsis thaliana] gi|330253765|gb|AEC08859.1| SWI/SNF complex subunit SWI3B [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|2459441|gb|AAB80676.1| putative SWI/SNF complex subunit SW13 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297823155|ref|XP_002879460.1| ATSWI3B [Arabidopsis lyrata subsp. lyrata] gi|297325299|gb|EFH55719.1| ATSWI3B [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449485249|ref|XP_004157113.1| PREDICTED: SWI/SNF complex subunit SWI3B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449455734|ref|XP_004145606.1| PREDICTED: SWI/SNF complex subunit SWI3B-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query418
TAIR|locus:2051028469 SWI3B "switch subunit 3" [Arab 0.877 0.782 0.570 2.6e-109
TAIR|locus:2043263 512 SWI3A "SWITCH/sucrose nonferme 0.229 0.187 0.458 4.1e-38
DICTYBASE|DDB_G0277033 1223 swi3 "SWIRM domain-containing 0.212 0.072 0.539 3.2e-37
ZFIN|ZDB-GENE-080514-3 1089 smarcc1a "SWI/SNF related, mat 0.208 0.079 0.482 7.8e-33
TAIR|locus:2036942 807 SWI3C "SWITCH/sucrose nonferme 0.526 0.272 0.280 2.2e-32
ZFIN|ZDB-GENE-060503-273 961 smarcc1b "SWI/SNF related, mat 0.208 0.090 0.471 1.3e-31
POMBASE|SPAC23H3.10 503 ssr2 "SWI/SNF and RSC complex 0.208 0.172 0.505 1.3e-31
UNIPROTKB|F1PVA9 1092 SMARCC2 "Uncharacterized prote 0.208 0.079 0.482 7.3e-31
UNIPROTKB|F1N4N6 1094 SMARCC2 "Uncharacterized prote 0.208 0.079 0.482 7.3e-31
UNIPROTKB|F1SM00 1167 LOC100621845 "Uncharacterized 0.208 0.074 0.482 9.5e-31
TAIR|locus:2051028 SWI3B "switch subunit 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1080 (385.2 bits), Expect = 2.6e-109, P = 2.6e-109
 Identities = 215/377 (57%), Positives = 270/377 (71%)

Query:    38 DVVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKI 97
             D ++VPSYS WFS+  I++CEV+ LPEFFDSRS SKNP+ Y Y R+SI+K YR++  RKI
Sbjct:    46 DNIHVPSYSSWFSWTDINDCEVRSLPEFFDSRSSSKNPKFYLYLRNSIIKQYRDDHPRKI 105

Query:    98 TFTDVRRTLVGDVGSIRRVFDFLETWGLINY--FASVKTLKWXXXXXXXXXXXXXX--XX 153
             +FTDVRRTLV DV SIRRVFDFL++WGLINY   AS K LKW                  
Sbjct:   106 SFTDVRRTLVSDVVSIRRVFDFLDSWGLINYNSSASAKPLKWEEKEAGKSAGDAASEPAT 165

Query:   154 XXXXXXXRLCNGCKTLCTIACFACDKYDLTLCARCYVRGNHRVGVSSSDFRRVEISEEAR 213
                    R CNGCK +C+IACFACDKYDLTLCARCYVR N+RVG++SS+F+RVEISEE++
Sbjct:   166 TVKETAKRNCNGCKAICSIACFACDKYDLTLCARCYVRSNYRVGINSSEFKRVEISEESK 225

Query:   214 SDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDV 273
              +W++KE L LLEA+MH+GDDW+KVA HV G++EKDC++ F+KLPFG++F+ KESDSED 
Sbjct:   226 PEWSDKEILLLLEAVMHYGDDWKKVASHVIGRTEKDCVSQFVKLPFGEQFV-KESDSEDG 284

Query:   274 DNKFFSINNPSDAVSESENVG--ATSPSKRMRLTPLADASNPIMAQAAFLSALXXXXXXX 331
                F  I + SD + ESE +    +SP+KR++LTPLADASNPIMAQAAFLSAL       
Sbjct:   285 LEMFDQIKD-SD-IPESEGIDKDGSSPNKRIKLTPLADASNPIMAQAAFLSALAGTNVAE 342

Query:   332 XXXXXXXTTLSDVDDRASKGSLMRNTRQQEAGVASNGDATQNALARASVDASSLIEKEEL 391
                      LSDVD  A K +  R+  +Q+A  AS+G+ T+N   RA  DA SLIEKEE 
Sbjct:   343 AAARAAVRALSDVDYEADKNA-SRDPNRQDANAASSGETTRNESERAWADAKSLIEKEEH 401

Query:   392 DVEKAISGIVEVQVRKI 408
             +VE AI   VEV+++KI
Sbjct:   402 EVEGAIKETVEVEMKKI 418
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0006338 "chromatin remodeling" evidence=ISS
GO:0016514 "SWI/SNF complex" evidence=ISS
GO:0040029 "regulation of gene expression, epigenetic" evidence=RCA
GO:0048573 "photoperiodism, flowering" evidence=RCA
TAIR|locus:2043263 SWI3A "SWITCH/sucrose nonfermenting 3A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277033 swi3 "SWIRM domain-containing protein Swi3" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080514-3 smarcc1a "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2036942 SWI3C "SWITCH/sucrose nonfermenting 3C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-273 smarcc1b "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
POMBASE|SPAC23H3.10 ssr2 "SWI/SNF and RSC complex subunit Ssr2" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|F1PVA9 SMARCC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1N4N6 SMARCC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SM00 LOC100621845 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84JG2SWI3B_ARATHNo assigned EC number0.58270.97600.8699yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query418
COG5259531 COG5259, RSC8, RSC chromatin remodeling complex su 7e-47
pfam0443380 pfam04433, SWIRM, SWIRM domain 3e-31
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 2e-09
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 1e-08
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 2e-08
COG5114 432 COG5114, COG5114, Histone acetyltransferase comple 7e-08
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 5e-04
>gnl|CDD|227584 COG5259, RSC8, RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information 
 Score =  168 bits (426), Expect = 7e-47
 Identities = 114/432 (26%), Positives = 180/432 (41%), Gaps = 101/432 (23%)

Query: 40  VNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITF 99
           + +PSY+ WF    I E E +  PEFF+ RSPSK P VY+ YR+ ++  YR NP+  +T 
Sbjct: 52  IIIPSYAEWFDGSKIHEIEKRSNPEFFNGRSPSKTPEVYKDYRNFMINSYRLNPNEYLTV 111

Query: 100 TDVRRTLVGDVGSIRRVFDFLETWGLINY------------------FASV--------- 132
           T  RR + GDV +I RV  FLE WGLINY                  F  +         
Sbjct: 112 TACRRNVAGDVAAIVRVHRFLEKWGLINYQVDPGTRPSTIGPPLTSHFQDLHDTPRGLSP 171

Query: 133 --------------KTLKWEDKETKSSAASAESS--------SALKETSKRLCNGCKTLC 170
                         K +++E  + ++ + S +S           LK+ S++  + C   C
Sbjct: 172 FLPWGPINQRVLGAKEIEYETHKEENYSPSLKSPKKESQGKVDELKDHSEKHPSSCSC-C 230

Query: 171 TIACFACDKYDL-----TLCARCYVRGNHRVGVSSSDFRRVEISEEARSD-WTEKETLQL 224
               F    ++L       C+ CY +G      +SSDF+ V IS   R   W+ +E L L
Sbjct: 231 GNKSFNTRYHNLRAEKYNSCSECYDQGRFPSEFTSSDFKPVTISLLIRDKNWSRQELLLL 290

Query: 225 LEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPS 284
           LE I  +GDDW KVA+HV  K+++ CI HF++LP    ++ K              N+  
Sbjct: 291 LEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIEDNYLSK--------GDGKGDNSKG 342

Query: 285 DAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVAARAAVTTLSDV 344
                                P   + NP+++  +FL+ +    +     RA + +    
Sbjct: 343 -------------------RLPFDGSENPVLSTISFLAGIVNPRVQSEKQRAIIKSGKIS 383

Query: 345 D-DRASKGSLMRNTRQQEAGVASNGDATQNALARASVDASSLIEKEELDVEKAISGIVEV 403
             +R S+  +                  + AL      A      EE  +E+  + +++ 
Sbjct: 384 HINRESQEHIEE--------------VIEYALDSGKEKAKLQATNEERKMERLRNVLIQA 429

Query: 404 QVRKI---LGHF 412
           Q+ K+   LGH 
Sbjct: 430 QLEKLKMKLGHL 441

Length = 531
>gnl|CDD|203011 pfam04433, SWIRM, SWIRM domain Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|227445 COG5114, COG5114, Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 418
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 100.0
KOG1279506 consensus Chromatin remodeling factor subunit and 100.0
PF0443386 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM 99.94
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 99.85
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 99.73
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.19
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 98.95
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.93
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.85
PLN03000 881 amine oxidase 98.84
PLN02328 808 lysine-specific histone demethylase 1 homolog 98.74
cd0233645 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present 98.54
PLN03212249 Transcription repressor MYB5; Provisional 98.33
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 98.26
PLN02529 738 lysine-specific histone demethylase 1 98.13
PLN03091 459 hypothetical protein; Provisional 98.12
KOG0048238 consensus Transcription factor, Myb superfamily [T 97.99
PLN03212249 Transcription repressor MYB5; Provisional 97.97
KOG0048238 consensus Transcription factor, Myb superfamily [T 97.81
PLN03091 459 hypothetical protein; Provisional 97.7
KOG0049 939 consensus Transcription factor, Myb superfamily [T 97.21
cd0233549 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present 96.89
PLN02976 1713 amine oxidase 96.76
cd0224946 ZZ Zinc finger, ZZ type. Zinc finger present in dy 96.52
cd0234043 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre 96.22
smart0029144 ZnF_ZZ Zinc-binding domain, present in Dystrophin, 96.21
KOG0049 939 consensus Transcription factor, Myb superfamily [T 96.13
cd0234348 ZZ_EF Zinc finger, ZZ type. Zinc finger present in 96.04
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 96.02
cd0233849 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre 95.61
cd0234549 ZZ_dah Zinc finger, ZZ type. Zinc finger present i 95.51
cd0234148 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present 95.35
PF0056946 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc 95.19
cd0233449 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr 94.9
KOG0051607 consensus RNA polymerase I termination factor, Myb 94.75
cd0234445 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present 93.87
KOG0051607 consensus RNA polymerase I termination factor, Myb 93.45
cd0233741 ZZ_CBP Zinc finger, ZZ type. Zinc finger present i 93.32
cd0233945 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre 93.27
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 92.66
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 92.35
KOG4167907 consensus Predicted DNA-binding protein, contains 91.98
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 89.52
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 89.48
COG5147 512 REB1 Myb superfamily proteins, including transcrip 87.79
KOG4329445 consensus DNA-binding protein [General function pr 87.77
KOG4282345 consensus Transcription factor GT-2 and related pr 87.77
cd0234243 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre 86.35
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 85.47
KOG4468 782 consensus Polycomb-group transcriptional regulator 85.33
COG5147 512 REB1 Myb superfamily proteins, including transcrip 85.11
KOG1280 381 consensus Uncharacterized conserved protein contai 83.62
KOG1279506 consensus Chromatin remodeling factor subunit and 82.64
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 81.75
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information 
Probab=100.00  E-value=5e-86  Score=666.75  Aligned_cols=345  Identities=31%  Similarity=0.537  Sum_probs=280.6

Q ss_pred             CCCCCeeecCCCCCCCCCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchhHHH
Q 014788           34 SSEPDVVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSI  113 (418)
Q Consensus        34 ~~q~~~iiiPs~s~WF~~~~ih~iE~~~lpeff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i  113 (418)
                      -+|+|+|+||||+.||++.+||+||+++.||||+||+++|||++|++||||||++||+||.+|||+|+||||++|||++|
T Consensus        46 ~~Q~~piiiPs~a~WFd~SKiHeIE~~snPeFF~~rs~~KTP~vYk~YR~FminsyRL~p~eYLtvTa~RRNvagDV~ai  125 (531)
T COG5259          46 MEQTHPIIIPSYAEWFDGSKIHEIEKRSNPEFFNGRSPSKTPEVYKDYRNFMINSYRLNPNEYLTVTACRRNVAGDVAAI  125 (531)
T ss_pred             hccCCceeccchhhhccccccccccccCCchhhcCCCCCCCHHHHHHHHhhccceeecCCcceEEeeeehhccchhHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhcccccCCCC--cccccccc---------ccccCCcCC--------C----------------CCcc-----
Q 014788          114 RRVFDFLETWGLINYFAS--VKTLKWED---------KETKSSAAS--------A----------------ESSS-----  153 (418)
Q Consensus       114 ~Rvh~FLe~wGlINy~~~--~kP~~~~~---------~~~~~~~~~--------~----------------~~~~-----  153 (418)
                      .|||+|||+|||||||++  ++|.....         .++.....+        +                ...|     
T Consensus       126 vrvHrFLekWGLINYqvdp~trPs~IgPplt~h~q~l~dtP~gl~p~l~~~~~~~~~~~a~~~e~~~~k~~~~sps~~~~  205 (531)
T COG5259         126 VRVHRFLEKWGLINYQVDPGTRPSTIGPPLTSHFQDLHDTPRGLSPFLPWGPINQRVLGAKEIEYETHKEENYSPSLKSP  205 (531)
T ss_pred             HHHHHHHHHhcceeeccCCCCCccccCCCcchhhHHHhhCccccccccCCCCccccccccchhhhhhhccCCCCchhhhh
Confidence            999999999999999999  66643321         111111110        0                0011     


Q ss_pred             ---------ccccccc---ccccCCCCccccccccccC-CCccchhhhhccCCCCCCCCCCCccccccCcc-cCCCCCHH
Q 014788          154 ---------ALKETSK---RLCNGCKTLCTIACFACDK-YDLTLCARCYVRGNHRVGVSSSDFRRVEISEE-ARSDWTEK  219 (418)
Q Consensus       154 ---------~~~~~~k---~~C~~C~~~c~~~~~~c~k-~d~~LC~~Cf~~G~~~~~~~s~dF~ki~~~~~-~~~~WT~~  219 (418)
                               ...+.+.   ..|+.||+.|...+|+... .++.+|..||.+|+|+.+..++||+++++... .+..||.+
T Consensus       206 ~k~s~~k~~el~~~~~~~~~~C~~cG~~~~~t~y~nlra~~~n~C~~C~~qg~f~s~~~ssDf~~v~~~~~~~dk~WS~q  285 (531)
T COG5259         206 KKESQGKVDELKDHSEKHPSSCSCCGNKSFNTRYHNLRAEKYNSCSECYDQGRFPSEFTSSDFKPVTISLLIRDKNWSRQ  285 (531)
T ss_pred             hhhcCCCccccccccccCCceeeccCccccchhhhhhhhhhcccchHHHhcCcCCCccccccchhhhhhcccccccccHH
Confidence                     1111222   6799999999877776543 46779999999999999999999999987655 56799999


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcCCCCCcccCCCCCCcccccccccCCCCCCccccccccCCCCCC
Q 014788          220 ETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDAVSESENVGATSPS  299 (418)
Q Consensus       220 E~l~LLe~ie~yg~nW~~IA~~VgtkT~~eC~~hfl~LPIeD~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (418)
                      |+++|||||++||++|++||.|||+||++|||+|||||||+|+|| ...+      ++. .+                 .
T Consensus       286 E~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~LPieD~~l-~k~~------~~~-~~-----------------~  340 (531)
T COG5259         286 ELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIEDNYL-SKGD------GKG-DN-----------------S  340 (531)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcCCcchhhh-hccc------CcC-CC-----------------C
Confidence            999999999999999999999999999999999999999999999 2111      010 00                 0


Q ss_pred             ccCCCcCCcCCCChHHHHHHHHHhhcChHHHHHHHHHHHHHhhccCcccccCccccccccccccccCChhhHHHHHHHHH
Q 014788          300 KRMRLTPLADASNPIMAQAAFLSALAGVEIAEVAARAAVTTLSDVDDRASKGSLMRNTRQQEAGVASNGDATQNALARAS  379 (418)
Q Consensus       300 ~~~~~~Pf~~a~NPvms~vAFLas~V~P~VAaaAA~aAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~aaa  379 (418)
                        ....||..++|||||+++||+++|.|+|++..+++.++ ..+.....+        ..+    ..-...+..+|++++
T Consensus       341 --~G~~~f~~seNPVlstis~L~~iV~p~v~s~~q~~~~k-~g~~~~~n~--------e~~----~~~~~~~~~al~s~~  405 (531)
T COG5259         341 --KGRLPFDGSENPVLSTISFLAGIVNPRVQSEKQRAIIK-SGKISHINR--------ESQ----EHIEEVIEYALDSGK  405 (531)
T ss_pred             --CCccccccCCCchhhHHHHHHHhcCHHHHHHHhhhhhh-ccceecCcc--------chh----hHHHHHHHHHHHHHH
Confidence              11379999999999999999999999999888777522 111111000        000    000124567999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Q 014788          380 VDASSLIEKEELDVEKAISGIVEVQVRKILGHFFCHIQL  418 (418)
Q Consensus       380 ~kAk~la~~EErei~rLv~~ive~qlkKlelKlk~~~~~  418 (418)
                      .+|+++|+.|||+|+||+..+|++||+||++||.+|++|
T Consensus       406 eka~l~~~~Eerkm~rL~~~~iq~qleKlk~Kl~~~k~L  444 (531)
T COG5259         406 EKAKLQATNEERKMERLRNVLIQAQLEKLKMKLGHLKEL  444 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999875

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PLN03000 amine oxidase Back     alignment and domain information
>PLN02328 lysine-specific histone demethylase 1 homolog Back     alignment and domain information
>cd02336 ZZ_RSC8 Zinc finger, ZZ type Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>PLN02529 lysine-specific histone demethylase 1 Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>cd02335 ZZ_ADA2 Zinc finger, ZZ type Back     alignment and domain information
>PLN02976 amine oxidase Back     alignment and domain information
>cd02249 ZZ Zinc finger, ZZ type Back     alignment and domain information
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type Back     alignment and domain information
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>cd02343 ZZ_EF Zinc finger, ZZ type Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type Back     alignment and domain information
>cd02345 ZZ_dah Zinc finger, ZZ type Back     alignment and domain information
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type Back     alignment and domain information
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>cd02334 ZZ_dystrophin Zinc finger, ZZ type Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>cd02344 ZZ_HERC2 Zinc finger, ZZ type Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>cd02337 ZZ_CBP Zinc finger, ZZ type Back     alignment and domain information
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG4329 consensus DNA-binding protein [General function prediction only] Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query418
2fq3_A104 Structure And Function Of The Swirm Domain, A Conse 5e-19
2yus_A79 Solution Structure Of The Sant Domain Of Human SwiS 6e-04
>pdb|2FQ3|A Chain A, Structure And Function Of The Swirm Domain, A Conserved Protein Module Found In Chromatin Regulatory Complexes Length = 104 Back     alignment and structure 
Iteration: 1

 Score = 92.0 bits (227), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/85 (48%), Positives = 54/85 (63%)
Query: 44  SYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVR 103
           SYS+WF+ + I   EV+ LPEFF +R PSK P VY  YR+ +V  YR NP+   + T  R
Sbjct: 15  SYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTAR 74
Query: 104 RTLVGDVGSIRRVFDFLETWGLINY 128
           R + GD  ++ R+  FL  WGLINY
Sbjct: 75  RNVSGDAAALFRLHKFLTKWGLINY 99
>pdb|2YUS|A Chain A, Solution Structure Of The Sant Domain Of Human SwiSNF- Related Matrix-Associated Actin-Dependent Regulator Of Chromatin Subfamily C Member 1 Length = 79 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query418
2fq3_A104 Transcription regulatory protein SWI3; four-helix 1e-43
2dce_A111 KIAA1915 protein; swirm domain, structural genomic 1e-37
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 2e-20
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 2e-14
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 2e-12
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 6e-10
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 2e-09
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 1e-08
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 5e-08
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 7e-08
2xag_A 852 Lysine-specific histone demethylase 1; amine oxida 3e-07
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 2e-06
2z3y_A 662 Lysine-specific histone demethylase 1; chromatin, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
2cjj_A93 Radialis; plant development, DNA-binding protein, 3e-05
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 4e-05
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 4e-05
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 8e-05
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 1e-04
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 1e-04
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 1e-04
1tot_A52 CREB-binding protein; zinc binding, CBP, TAZ2, tra 1e-04
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 1e-04
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 2e-04
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 7e-04
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18 Length = 104 Back     alignment and structure
 Score =  146 bits (371), Expect = 1e-43
 Identities = 42/92 (45%), Positives = 55/92 (59%)

Query: 42  VPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTD 101
             SYS+WF+ + I   EV+ LPEFF +R PSK P VY  YR+ +V  YR NP+   + T 
Sbjct: 13  ASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTT 72

Query: 102 VRRTLVGDVGSIRRVFDFLETWGLINYFASVK 133
            RR + GD  ++ R+  FL  WGLINY    K
Sbjct: 73  ARRNVSGDAAALFRLHKFLTKWGLINYQVDSK 104
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94 Back     alignment and structure
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Length = 482 Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6 Length = 52 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query418
2fq3_A104 Transcription regulatory protein SWI3; four-helix 100.0
2dce_A111 KIAA1915 protein; swirm domain, structural genomic 100.0
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.67
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.44
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.35
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 99.27
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.13
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.12
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.09
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.09
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.08
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.07
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 99.03
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.03
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.0
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 98.97
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.89
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 98.85
2cjj_A93 Radialis; plant development, DNA-binding protein, 98.84
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 98.34
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 98.82
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.78
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 98.76
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.74
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 98.72
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.7
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.69
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.68
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 98.67
4gut_A 776 Lysine-specific histone demethylase 1B; histone de 98.67
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.66
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.64
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 98.63
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 98.59
2z3y_A 662 Lysine-specific histone demethylase 1; chromatin, 98.58
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 98.52
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 98.47
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 98.44
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.43
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 98.41
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 98.39
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 98.39
2crg_A70 Metastasis associated protein MTA3; transcription 98.35
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 98.33
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 98.24
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 98.23
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 98.12
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 97.83
2xag_A 852 Lysine-specific histone demethylase 1; amine oxida 97.76
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 97.07
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 96.86
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 96.63
2cuj_A108 Transcriptional adaptor 2-like; transcriptional re 96.55
2aqe_A90 Transcriptional adaptor 2, ADA2 alpha; helix-turn- 96.49
2elj_A88 Transcriptional adapter 2; YDR448W, structural gen 96.3
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 96.25
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 94.97
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 95.91
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 95.84
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 95.43
2e5r_A63 Dystrobrevin alpha; ZZ domain, structural genomics 95.38
2dip_A98 Zinc finger SWIM domain-containing protein 2; ZZ d 95.02
2fc7_A82 ZZZ3 protein; structure genomics, ZZ domain, struc 94.4
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 93.23
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 93.16
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 91.72
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 91.36
1tot_A52 CREB-binding protein; zinc binding, CBP, TAZ2, tra 90.61
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 89.22
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 87.34
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18 Back     alignment and structure
Probab=100.00  E-value=1.4e-41  Score=287.05  Aligned_cols=94  Identities=44%  Similarity=0.814  Sum_probs=84.7

Q ss_pred             CeeecCCCCCCCCCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHH
Q 014788           38 DVVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVF  117 (418)
Q Consensus        38 ~~iiiPs~s~WF~~~~ih~iE~~~lpeff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh  117 (418)
                      |+=.-|+|+.||++++||++|+++|||||+|++++|||++|++|||+||++||.||.+|||+|+||++|+|||++|+|||
T Consensus         9 ~~~~~p~~s~wF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~gDv~~i~RVh   88 (104)
T 2fq3_A            9 HHGMASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLH   88 (104)
T ss_dssp             --------CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHH
T ss_pred             cCCCCCCcccccCcccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccccHHHHHHHH
Confidence            34467999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhcccccCCCC
Q 014788          118 DFLETWGLINYFAS  131 (418)
Q Consensus       118 ~FLe~wGlINy~~~  131 (418)
                      +|||+|||||||++
T Consensus        89 ~FLe~wGLIN~~v~  102 (104)
T 2fq3_A           89 KFLTKWGLINYQVD  102 (104)
T ss_dssp             HHHHHTTSSSSCC-
T ss_pred             HHHHHcCeeccCCC
Confidence            99999999999998
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18 Back     alignment and structure
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A Back     alignment and structure
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6 Back     alignment and structure
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6 Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6 Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 418
d2fq3a185 a.4.1.18 (A:311-395) Transcription regulatory prot 1e-37
d2dw4a1102 a.4.1.18 (A:172-273) Lysine-specific histone demet 3e-28
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 7e-10
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 2e-09
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 7e-07
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 8e-07
d2crga157 a.4.1.3 (A:8-64) Metastasis associated protein MTA 1e-06
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 1e-06
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 5e-06
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 5e-05
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 3e-04
d1tota152 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse 5e-04
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 6e-04
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 0.001
>d2fq3a1 a.4.1.18 (A:311-395) Transcription regulatory protein swi3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SWIRM domain
domain: Transcription regulatory protein swi3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  129 bits (326), Expect = 1e-37
 Identities = 39/83 (46%), Positives = 52/83 (62%)

Query: 46  SRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRT 105
           S+WF+ + I   EV+ LPEFF +R PSK P VY  YR+ +V  YR NP+   + T  RR 
Sbjct: 1   SKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRN 60

Query: 106 LVGDVGSIRRVFDFLETWGLINY 128
           + GD  ++ R+  FL  WGLINY
Sbjct: 61  VSGDAAALFRLHKFLTKWGLINY 83
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query418
d2fq3a185 Transcription regulatory protein swi3 {Baker's yea 100.0
d2dw4a1102 Lysine-specific histone demethylase 1, LSD1 {Human 99.96
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.47
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.19
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.17
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.15
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.12
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.12
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.11
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 99.06
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.96
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 98.94
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 98.94
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 98.72
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 98.63
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 98.5
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 98.31
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.27
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 97.66
d2cuja1101 Transcriptional adaptor 2-like, TADA2L {Mouse (Mus 96.95
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 96.91
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 96.4
d2fc7a169 Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu 95.06
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 94.59
d1tota152 CREB-binding protein, CBP {Mouse (Mus musculus) [T 90.42
d2dipa185 Zinc finger ZZ-type-containing protein 2 {Human (H 88.57
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 83.41
>d2fq3a1 a.4.1.18 (A:311-395) Transcription regulatory protein swi3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SWIRM domain
domain: Transcription regulatory protein swi3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-36  Score=247.38  Aligned_cols=85  Identities=46%  Similarity=0.884  Sum_probs=83.8

Q ss_pred             CCCCCCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhccc
Q 014788           46 SRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGL  125 (418)
Q Consensus        46 s~WF~~~~ih~iE~~~lpeff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGl  125 (418)
                      |+||++++||+|||++|||||++++.+|||+.|+.|||+||++|+.||.+|||+|+||+++.||++++.|||+||++||+
T Consensus         1 s~WF~~~~i~~iE~~~lPeff~~~~~~kt~~~Yl~iRN~Il~~w~~np~~~Lt~~~~~~~~~~d~~~~~ri~~FL~~~G~   80 (85)
T d2fq3a1           1 SKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKFLTKWGL   80 (85)
T ss_dssp             CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHHHHHHHTTS
T ss_pred             CCCCCCCcCCHHHHHHCHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCeeeeHHHHHhhccCCHHHHHHHHHHHHHcCc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCC
Q 014788          126 INYFA  130 (418)
Q Consensus       126 INy~~  130 (418)
                      |||||
T Consensus        81 INf~v   85 (85)
T d2fq3a1          81 INYQV   85 (85)
T ss_dssp             SSSCC
T ss_pred             cCccC
Confidence            99997
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure