Citrus Sinensis ID: 014820
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 418 | 2.2.26 [Sep-21-2011] | |||||||
| Q940M4 | 500 | Organic cation/carnitine | yes | no | 0.976 | 0.816 | 0.530 | 1e-109 | |
| P30638 | 520 | Putative transporter ZK63 | yes | no | 0.933 | 0.75 | 0.321 | 1e-57 | |
| Q2XWK0 | 548 | Synaptic vesicle 2-relate | N/A | no | 0.897 | 0.684 | 0.346 | 1e-55 | |
| Q5R5T8 | 548 | Synaptic vesicle 2-relate | yes | no | 0.899 | 0.686 | 0.334 | 2e-55 | |
| Q8N4V2 | 548 | Synaptic vesicle 2-relate | yes | no | 0.899 | 0.686 | 0.334 | 2e-55 | |
| Q1JP63 | 548 | Synaptic vesicle 2-relate | yes | no | 0.899 | 0.686 | 0.334 | 5e-55 | |
| Q9Z2I7 | 548 | Synaptic vesicle 2-relate | yes | no | 0.899 | 0.686 | 0.330 | 4e-51 | |
| Q8BFT9 | 548 | Synaptic vesicle 2-relate | yes | no | 0.899 | 0.686 | 0.332 | 5e-51 | |
| Q1LVS8 | 506 | Putative transporter SVOP | no | no | 0.909 | 0.750 | 0.320 | 6e-48 | |
| Q8N434 | 492 | Putative transporter SVOP | no | no | 0.911 | 0.774 | 0.325 | 2e-47 |
| >sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 223/420 (53%), Positives = 291/420 (69%), Gaps = 12/420 (2%)
Query: 1 MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSST 60
MA+ +TVDEAL +GFGK+Q +VLAYAG+GWVAEAME+M+LSFVGP V+S WNLS+
Sbjct: 1 MADGNTRFTVDEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSAR 60
Query: 61 EESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLR 120
+ESLIT+ VFAG+++GAY+WG+V+D +GRR GF+ A+VT AG LS+FSPNY+ LI LR
Sbjct: 61 QESLITSVVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILR 120
Query: 121 CLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 180
CLVG+GLG G V SW+LEF+P +RG WMV+FS+FWT+G++ EA AW++MPRL WRWL
Sbjct: 121 CLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWL 180
Query: 181 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNG-KLVARRS 239
L SS+PS +LL F + ESPRYL L+GR AEA LEKIA++NKT+LP G +
Sbjct: 181 LAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEALAILEKIARMNKTQLPPGVLSSELET 240
Query: 240 TLPTGERAPPELVHLLSSNGGNKTT---------EGKSGLSLFLMLFSSKLARTTILLWL 290
L + P E HLL + + + + G SL L L S L + T+LLW+
Sbjct: 241 ELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADKEPGFSL-LALLSPTLMKRTLLLWV 299
Query: 291 LLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAA 350
+ FGN+FAYY VVLL +EL++ RC + D N Y D FI S AE PGLL++A
Sbjct: 300 VFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNSNDVN-YRDVFIASFAEFPGLLISA 358
Query: 351 ILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410
+VD GRK S+ M C+FLLPL+++QS +TT LLFG R+C+ AFTV IYA E+
Sbjct: 359 AMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITTVLLFGGRICISAAFTVVYIYAPEI 418
|
High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations. Arabidopsis thaliana (taxid: 3702) |
| >sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5 | Back alignment and function description |
|---|
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/423 (32%), Positives = 220/423 (52%), Gaps = 33/423 (7%)
Query: 3 EQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEE 62
+ +TVDEA+ +GFG++Q + G+ W+A+AME+M+LS + P + EW +SS ++
Sbjct: 62 DSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQ 121
Query: 63 SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL 122
+L+TT VF+G+++ + WG + D +GRR G LV G++S SP++ L+ R L
Sbjct: 122 ALVTTCVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFRGL 181
Query: 123 VGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 182
G G+G ++ + EF+P + R +V+ SFW IG+V EA+ A+ +M WR L+
Sbjct: 182 TGFGIGGVPQSVTLYAEFLPTAQRAKCVVLIESFWAIGAVFEALLAYFVMESFGWRALMF 241
Query: 183 LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 242
LSS+P I + PES R+ G A L+ A++N+ +LP G+LV S+
Sbjct: 242 LSSLPLGIFAVASFWLPESARFDMASGHPERALETLQAAARMNRVQLPTGRLV---SSTK 298
Query: 243 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAV 302
G + ++ +LLS + L +TTILLW + +F+YY +
Sbjct: 299 AGSESRGDIANLLSPD----------------------LRKTTILLWCIWAITAFSYYGM 336
Query: 303 VLLISELSSLDTRCRSPLMFSH-------HPQDANLYIDEFITSLAEIPGLLLAAILVDT 355
VL + L C L FS+ P + Y D T+LAE PGL++ ++++
Sbjct: 337 VLFTTVLFQSHDECHGGL-FSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEW 395
Query: 356 AGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTL 415
GRK ++ + + + +F L T L+F AR + GAF + +Y EV TL
Sbjct: 396 FGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVLIFVARAFISGAFQCAYVYTPEVYPTTL 455
Query: 416 FTV 418
V
Sbjct: 456 RAV 458
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Caenorhabditis elegans (taxid: 6239) |
| >sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 144/416 (34%), Positives = 214/416 (51%), Gaps = 41/416 (9%)
Query: 6 HVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLI 65
+ V++A+ +GFGK+Q + GL W+A+AME+MILS + P + EW L S + +L+
Sbjct: 66 DTFMVEDAVEAIGFGKFQWKLSMLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALL 125
Query: 66 TTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGV 125
T+ VF G++ + WG V+D YGRR G + T G+LS+F+P Y ++ LR LVG
Sbjct: 126 TSVVFIGMMASSSLWGNVSDQYGRRTGLKISVIWTLYYGILSAFAPVYSWILVLRGLVGF 185
Query: 126 GLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS 185
G+G ++ + EF+P +R +++ FW +G+V E + A +MP L WRWLL LS+
Sbjct: 186 GIGGVPQSVTLYAEFLPMKSRAKCILLIEIFWALGTVFEVLLAIFVMPTLGWRWLLILSA 245
Query: 186 IPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTG 244
+P +L A L F PES RY L G +A L++IA N +P GKL+ R
Sbjct: 246 LP-LMLFAILCFWLPESARYEVLSGNQEKALATLKRIATENGAPMPLGKLIVSR------ 298
Query: 245 ERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVL 304
+ GK LFS + TT+LLW + F N+F+YY +VL
Sbjct: 299 -----------------QEDRGK-----IRDLFSPQFRCTTLLLWFIWFSNAFSYYGLVL 336
Query: 305 LISELSSLDTRC---------RSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT 355
L +EL C + + Y D T+L+E PGLL+ ++D
Sbjct: 337 LTTELFQAGDVCSISNQRKAVKPKCSLACEYLTVEDYTDLLWTTLSEFPGLLVTLWIIDR 396
Query: 356 AGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410
GRK ++ I F + S LL + N+LT LF AR + G F + +Y EV
Sbjct: 397 VGRKKTMAICFIIFSFSALLLFLCVGRNVLTV-FLFIARAFISGGFQAAYVYTPEV 451
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Xenopus laevis (taxid: 8355) |
| >sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/415 (33%), Positives = 212/415 (51%), Gaps = 39/415 (9%)
Query: 6 HVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLI 65
+ V++A+ +GFGK+Q + GL W+A+AME+MILS + P + EW L S + +L+
Sbjct: 66 DTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALL 125
Query: 66 TTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGV 125
T+ VF G++ + WG ++D YGR+ G L T G+LS+F+P Y ++ LR LVG
Sbjct: 126 TSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGF 185
Query: 126 GLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS 185
G+G ++ + EF+P R +++ FW IG+V E + A +MP L WRWLL LS+
Sbjct: 186 GIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSA 245
Query: 186 IPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGE 245
+P + + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 246 VPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR------- 298
Query: 246 RAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL 305
+ GK LF+ TT+LLW + F N+F+YY +VLL
Sbjct: 299 ----------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLL 337
Query: 306 ISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA 356
+EL SS + + Y+D T+L+E PG+L+ ++D
Sbjct: 338 TTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRL 397
Query: 357 GRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410
GRK ++ + F + S LL + N+LT LLF AR + G F + +Y EV
Sbjct: 398 GRKKTMALCFVIFSFCSLLLFICVGRNVLTL-LLFIARAFISGGFQAAYVYTPEV 451
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Pongo abelii (taxid: 9601) |
| >sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/415 (33%), Positives = 212/415 (51%), Gaps = 39/415 (9%)
Query: 6 HVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLI 65
+ V++A+ +GFGK+Q + GL W+A+AME+MILS + P + EW L S + +L+
Sbjct: 66 DTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALL 125
Query: 66 TTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGV 125
T+ VF G++ + WG ++D YGR+ G L T G+LS+F+P Y ++ LR LVG
Sbjct: 126 TSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGF 185
Query: 126 GLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS 185
G+G ++ + EF+P R +++ FW IG+V E + A +MP L WRWLL LS+
Sbjct: 186 GIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSA 245
Query: 186 IPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGE 245
+P + + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 246 VPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR------- 298
Query: 246 RAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL 305
+ GK LF+ TT+LLW + F N+F+YY +VLL
Sbjct: 299 ----------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLL 337
Query: 306 ISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA 356
+EL SS + + Y+D T+L+E PG+L+ ++D
Sbjct: 338 TTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRL 397
Query: 357 GRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410
GRK ++ + F + S LL + N+LT LLF AR + G F + +Y EV
Sbjct: 398 GRKKTMALCFVIFSFCSLLLFICVGRNVLTL-LLFIARAFISGGFQAAYVYTPEV 451
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Homo sapiens (taxid: 9606) |
| >sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 215 bits (548), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 139/415 (33%), Positives = 212/415 (51%), Gaps = 39/415 (9%)
Query: 6 HVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLI 65
+ V++A+ +GFGK+Q + GL W+A+AME+MILS + P + EW L S + +L+
Sbjct: 66 DTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALL 125
Query: 66 TTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGV 125
T+ VF G++ + WG ++D YGR+ G L T G+LS+F+P Y ++ LR LVG
Sbjct: 126 TSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGF 185
Query: 126 GLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS 185
G+G ++ + EF+P R +++ FW IG+V E + A +MP L WRWLL LS+
Sbjct: 186 GIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSA 245
Query: 186 IPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGE 245
+P + + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 246 VPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR------- 298
Query: 246 RAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL 305
+ GK LF+ TT+LLW + F N+F+YY +VLL
Sbjct: 299 ----------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLL 337
Query: 306 ISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA 356
+EL SS + + Y+D T+L+E PG+L+ ++D
Sbjct: 338 TTELFQAGDVCSISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRL 397
Query: 357 GRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410
GRK ++ + F + S LL + N+LT LLF AR + G F + +Y EV
Sbjct: 398 GRKKTMALCFVVFSFCSLLLFICVGRNMLTL-LLFIARAFISGGFQAAYVYTPEV 451
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Bos taurus (taxid: 9913) |
| >sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1 | Back alignment and function description |
|---|
Score = 202 bits (514), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 137/415 (33%), Positives = 210/415 (50%), Gaps = 39/415 (9%)
Query: 6 HVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLI 65
+ V++A+ +GFG++Q + GL W+A+AME+MILS + P + EW L S + +L+
Sbjct: 66 DTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALL 125
Query: 66 TTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGV 125
T+ VF G++ + WG ++D YGR+ G T G+LS+F+P Y ++ LR LVG
Sbjct: 126 TSVVFIGMMSSSTLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILVLRGLVGF 185
Query: 126 GLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS 185
G+G ++ + EF+P R +++ FW IG+V E + A +MP L WRWLL LS+
Sbjct: 186 GIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSA 245
Query: 186 IPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGE 245
P + + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 246 APLLVFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR------- 298
Query: 246 RAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL 305
+ GK LF+ TT+LLW + F N+F+YY +VLL
Sbjct: 299 ----------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLL 337
Query: 306 ISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA 356
+EL SS + + Y+D T+L+E PG+L+ ++D
Sbjct: 338 TTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRL 397
Query: 357 GRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410
GRK ++ + F + S LL + N+LT LLF AR + G F + +Y EV
Sbjct: 398 GRKKTMALCFVIFSLCSLLLFICIGRNVLTL-LLFIARAFISGGFQAAYVYTPEV 451
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1 | Back alignment and function description |
|---|
Score = 202 bits (513), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 138/415 (33%), Positives = 211/415 (50%), Gaps = 39/415 (9%)
Query: 6 HVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLI 65
+ V++A+ +GFG++Q + GL W+A+AME+MILS + P + EW L S + +L+
Sbjct: 66 DTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALL 125
Query: 66 TTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGV 125
T+ VF G++ + WG ++D YGR+ G L T G+LS+F+P Y ++ LR LVG
Sbjct: 126 TSVVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGF 185
Query: 126 GLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS 185
G+G ++ + EF+P R +++ FW IG+V E + A +MP L WRWLL LS+
Sbjct: 186 GIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSA 245
Query: 186 IPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGE 245
P + + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 246 APLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR------- 298
Query: 246 RAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL 305
+ GK LF+ TT+LLW + F N+F+YY +VLL
Sbjct: 299 ----------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLL 337
Query: 306 ISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA 356
+EL SS + + Y+D T+L+E PG+L+ ++D
Sbjct: 338 TTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRL 397
Query: 357 GRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410
GRK ++ + F + S LL + N+LT LLF AR + G F + +Y EV
Sbjct: 398 GRKKTMALCFIIFSLCSLLLFICIGRNVLTL-LLFIARAFISGGFQAAYVYTPEV 451
|
Mus musculus (taxid: 10090) |
| >sp|Q1LVS8|SVOPL_DANRE Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (486), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 135/421 (32%), Positives = 200/421 (47%), Gaps = 41/421 (9%)
Query: 3 EQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEE 62
++ YTV+EA+ +GFG + + G + EAMEIM+L+ V P ++ EW+L +
Sbjct: 44 KEPKCYTVEEAVESIGFGCFHILLFVIMGSANIVEAMEIMLLAVVSPEIRCEWHLEDWQV 103
Query: 63 SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL 122
+L++T VF G +V G +AD YGR G + + L+SFS +Y I LRC+
Sbjct: 104 ALVSTMVFFGFMVCGVLCGYIADKYGRWKVVFGGFVWASYFSFLTSFSTSYGWFIFLRCM 163
Query: 123 VGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 182
VG G+ + EF+P R + + S FW +GS+ + ++P + WRW++
Sbjct: 164 VGCGVAATSQGFVLKTEFIPAKYRAYLLPLASIFWMMGSILIIVLGMTVVPTMGWRWMIR 223
Query: 183 LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 242
S IPS +L+ F PES R+ G A L++IA++N NG LP
Sbjct: 224 FSVIPSLVLIGLFMFIPESARFQVSAGNIQGAMSTLKRIAKMN-----NG-------VLP 271
Query: 243 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAV 302
GE PE+ + GN T L SS RT++LLW F SF+YY
Sbjct: 272 EGELREPEV-----TERGNAVT-----------LISSAFRRTSLLLWYSWFVASFSYYGS 315
Query: 303 VLLISELSSLDTRCRSPLMFSHH-------------PQDANLYIDEFITSLAEIPGLLLA 349
VL SEL + C + H P +++ Y I+ L E+ + L
Sbjct: 316 VLSSSELLEKNLLCVTDPDLEHQIKHIQEETLCYCIPFNSDDYQTLLISCLGEVALIPLN 375
Query: 350 AILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAE 409
IL++ GRK S+ I+ LS F + + + + T LLF R V F V IY AE
Sbjct: 376 IILLNIVGRKYSMVILLLLSAFFFMLVNICTTMLGFTILLFLLRSVVSMNFNVVYIYTAE 435
Query: 410 V 410
V
Sbjct: 436 V 436
|
Danio rerio (taxid: 7955) |
| >sp|Q8N434|SVOPL_HUMAN Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2 | Back alignment and function description |
|---|
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 141/433 (32%), Positives = 212/433 (48%), Gaps = 52/433 (12%)
Query: 3 EQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEE 62
++ +TV++A+ +GFG++ + G V EAMEIM+++ V P ++ EW L + +
Sbjct: 27 KEPKTFTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQV 86
Query: 63 SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL 122
+L+TT VF G +V + +GL+AD YGR L L A LL+SF+P+YI + LR +
Sbjct: 87 ALVTTMVFFGYMVFSILFGLLADRYGRWKILLISFLWGAYFSLLTSFAPSYIWFVFLRTM 146
Query: 123 VGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 182
VG G+ L EF+P RG + + FW GS+ A +I+P + WRWL+
Sbjct: 147 VGCGVSGHSQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIIGLASVIIPTIGWRWLIR 206
Query: 183 LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 242
++SIP IL+ F PES R+ G T A LE++A++N++ +P GKLV P
Sbjct: 207 VASIPGIILIVAFKFIPESARFNVSTGNTRAALATLERVAKMNRSVMPEGKLVE-----P 261
Query: 243 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAV 302
E+ G+ F L +K RTT+ +W++ G SFAYY V
Sbjct: 262 VLEK------------------RGR-----FADLLDAKYLRTTLQIWVIWLGISFAYYGV 298
Query: 303 VLLISELSSLDTRC------------------RSPLMFSH--HPQDANLYIDEFITSLAE 342
+L +EL D C +SP + H P D Y I+++ E
Sbjct: 299 ILASAELLERDLVCGSKSDSAVVVTGGDSGESQSPC-YCHMFAPSD---YRTMIISTIGE 354
Query: 343 IPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV 402
I L + ++ GR+LS++I + LF L L S+ G LF R V F
Sbjct: 355 IALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNT 414
Query: 403 SLIYAAEVKLMTL 415
IY AEV T+
Sbjct: 415 VYIYTAEVYPTTM 427
|
Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 418 | ||||||
| 224118680 | 492 | predicted protein [Populus trichocarpa] | 0.973 | 0.827 | 0.625 | 1e-133 | |
| 383932368 | 482 | MFS [Gossypium hirsutum] | 0.966 | 0.838 | 0.623 | 1e-133 | |
| 255574249 | 497 | sugar transporter, putative [Ricinus com | 0.973 | 0.818 | 0.594 | 1e-130 | |
| 255573803 | 498 | sugar transporter, putative [Ricinus com | 0.961 | 0.807 | 0.602 | 1e-128 | |
| 224118546 | 493 | predicted protein [Populus trichocarpa] | 0.978 | 0.829 | 0.565 | 1e-123 | |
| 224095100 | 463 | predicted protein [Populus trichocarpa] | 0.925 | 0.835 | 0.543 | 1e-122 | |
| 90265074 | 489 | H0702G05.6 [Oryza sativa Indica Group] | 0.971 | 0.830 | 0.525 | 1e-120 | |
| 224095094 | 485 | predicted protein [Populus trichocarpa] | 0.952 | 0.820 | 0.546 | 1e-119 | |
| 242039569 | 491 | hypothetical protein SORBIDRAFT_01g02099 | 0.954 | 0.812 | 0.514 | 1e-118 | |
| 413934140 | 500 | hypothetical protein ZEAMMB73_097319 [Ze | 0.954 | 0.798 | 0.511 | 1e-118 |
| >gi|224118680|ref|XP_002331421.1| predicted protein [Populus trichocarpa] gi|222873635|gb|EEF10766.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 255/408 (62%), Positives = 315/408 (77%), Gaps = 1/408 (0%)
Query: 3 EQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEE 62
E VYT+D+AL GFGK+Q VLAYAGLGW AEAMEI+ILSFVGP VKS+WNLSST+E
Sbjct: 4 EDQLVYTLDDALASAGFGKFQFLVLAYAGLGWFAEAMEILILSFVGPAVKSQWNLSSTQE 63
Query: 63 SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL 122
SL++T VFAG++VGAY+WGL +D GRR GFLG ++T+ AG LS+FSPNY++L+ LRCL
Sbjct: 64 SLLSTVVFAGMLVGAYSWGLFSDYCGRRQGFLGITIITSAAGFLSTFSPNYVSLLILRCL 123
Query: 123 VGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 182
VGVGLG G VF SWFLEFVP S+RG WMV+FS+FWT G++ EA AWI++PRL+WRWLL
Sbjct: 124 VGVGLGGGPVFSSWFLEFVPASHRGTWMVVFSTFWTFGTIFEAALAWIVLPRLNWRWLLA 183
Query: 183 LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 242
SS+PS L F PESPRYL +KGR EAH LEKIAQ+N++KLP G LV+ +
Sbjct: 184 FSSLPSIAQLFFYWIVPESPRYLSMKGRITEAHNILEKIAQLNQSKLPPGMLVSDSTIGL 243
Query: 243 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAV 302
E AP + LLSS N ++ KSG S F+MLFSSKL RTT+LLWLL FGN+F+YY +
Sbjct: 244 DEESAPSKYTPLLSST-RNLVSDFKSGFSSFVMLFSSKLIRTTLLLWLLFFGNAFSYYGI 302
Query: 303 VLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSI 362
+LL SELSS + +C S ++ S + QD +LYI+ FITSLAE+PG+LL+AI+VD GRKLS+
Sbjct: 303 ILLTSELSSEEGKCASTVLRSENLQDDSLYINVFITSLAELPGILLSAIIVDRFGRKLSM 362
Query: 363 TIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410
MF L+C+FLLPLV +Q LTT LLFGARMC +G FTV+ IYA EV
Sbjct: 363 AFMFVLACIFLLPLVFHQHATLTTALLFGARMCAIGTFTVAAIYAPEV 410
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|383932368|gb|AFH57281.1| MFS [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 252/404 (62%), Positives = 307/404 (75%)
Query: 7 VYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLIT 66
+YT+DEAL VGFGK+Q FVL YAGLGW AEAMEIMILSF+G VKSEW LSS +ESL++
Sbjct: 8 LYTLDEALETVGFGKFQGFVLGYAGLGWFAEAMEIMILSFIGQAVKSEWQLSSGQESLLS 67
Query: 67 TSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVG 126
T VFAG+++GA WGL++DNYGRR GFL ++VT GAGLLS+FSPNY+TL LR LVG G
Sbjct: 68 TVVFAGMLLGANTWGLLSDNYGRRKGFLTISMVTFGAGLLSTFSPNYLTLALLRGLVGFG 127
Query: 127 LGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI 186
LG VFLSWFLEF+P SNRGMWMV+FS+FWT GS+ EA AWI+MPRL+WRW+L S++
Sbjct: 128 LGGSSVFLSWFLEFIPASNRGMWMVVFSTFWTFGSIFEATLAWIVMPRLNWRWVLAFSAV 187
Query: 187 PSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGER 246
PSF LL G PESPRYLC+KG T++A R LEKIA VN+TKLP G LV+ RS E
Sbjct: 188 PSFALLILYGVAPESPRYLCMKGNTSDALRILEKIASVNQTKLPPGVLVSGRSNDKDEES 247
Query: 247 APPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLI 306
AP E L + TT+ KSG S F MLFSSKL RTT+LLW+L FG+SF+YY ++LL
Sbjct: 248 APSENTAPLLPSLSKSTTQSKSGFSSFFMLFSSKLIRTTLLLWVLFFGDSFSYYGIILLT 307
Query: 307 SELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMF 366
S+LSS + C L + +PQD LY++ FITS+AE+PGLLL+AILVD GRK S+ IMF
Sbjct: 308 SKLSSGQSTCFPSLQSNINPQDDGLYLNAFITSMAELPGLLLSAILVDRVGRKHSMAIMF 367
Query: 367 TLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410
L+ +FL PL+ Q +LTT LLFGARM MG FTV+ IY+ E+
Sbjct: 368 GLAFIFLTPLLIQQPAVLTTCLLFGARMNAMGTFTVASIYSPEL 411
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574249|ref|XP_002528039.1| sugar transporter, putative [Ricinus communis] gi|223532569|gb|EEF34357.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/407 (59%), Positives = 308/407 (75%)
Query: 4 QGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEES 63
Q VY +DEAL VGFGK+Q FVL YAGLGW +EAME+MILSFVGP VK +W LSST+ES
Sbjct: 8 QNLVYNLDEALAAVGFGKFQGFVLVYAGLGWFSEAMEVMILSFVGPAVKLKWELSSTQES 67
Query: 64 LITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLV 123
L++T VF G+++GA WGL++DNYGRR L ++T+GAG +S+FSPNY+TL+ LRCLV
Sbjct: 68 LLSTVVFGGMLIGACTWGLISDNYGRRKCVLSITVITSGAGFISAFSPNYLTLVVLRCLV 127
Query: 124 GVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGL 183
G GLG HVFLSWFLEF+P S+RG WMVIFS+FWT+G + EA AWI+M RL+WRWLL L
Sbjct: 128 GFGLGGTHVFLSWFLEFIPTSHRGKWMVIFSTFWTLGIIFEASLAWIVMLRLNWRWLLAL 187
Query: 184 SSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 243
S++PSF LL F G PESPRYLCLKGRTA+AH+ LEKIA VN+ +LP G LV+
Sbjct: 188 STVPSFSLLLFYGLVPESPRYLCLKGRTAQAHQVLEKIALVNQKELPPGMLVSYGKIKED 247
Query: 244 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVV 303
E + E L K + KSG S F +LFSS L +TT+LLW+L FGN F+YY ++
Sbjct: 248 EEISALEQKRSLLFMDREKISTLKSGFSSFSLLFSSNLIQTTLLLWVLFFGNVFSYYGII 307
Query: 304 LLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSIT 363
LL S+LSS +++C ++ S +PQD +L++D ITS AE+PG+LL+A++VD GRKLS+
Sbjct: 308 LLTSQLSSSESKCSLTILHSQNPQDESLFMDVLITSFAELPGILLSAMMVDRFGRKLSMA 367
Query: 364 IMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410
IMF + +FLLPLV+ QS+ILTTGLLFGARM +G FTV+ IYA E+
Sbjct: 368 IMFIFAWIFLLPLVSRQSDILTTGLLFGARMFSLGTFTVASIYAPEL 414
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255573803|ref|XP_002527821.1| sugar transporter, putative [Ricinus communis] gi|223532795|gb|EEF34573.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 243/403 (60%), Positives = 297/403 (73%), Gaps = 1/403 (0%)
Query: 8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITT 67
YT+DEAL VGFGK+Q VL YAGLG AEAME+MILSFVGP VKSEW LSS++ESL+T+
Sbjct: 14 YTLDEALAAVGFGKFQGLVLVYAGLGSFAEAMEMMILSFVGPAVKSEWGLSSSQESLLTS 73
Query: 68 SVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
VFAG++ GAY+WGL++DNYGRR G LG L+T GAG LS+F PNYI+LITLRCLVG+GL
Sbjct: 74 VVFAGMLFGAYSWGLISDNYGRRKGILGSTLLTCGAGSLSTFCPNYISLITLRCLVGIGL 133
Query: 128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
G G VF SWFLEFVP S+RG WMV++S+ WT G++ EA AWI+MPRL WRWLL SS+P
Sbjct: 134 GGGPVFSSWFLEFVPASHRGTWMVVYSTSWTFGTIFEATLAWIVMPRLSWRWLLAFSSLP 193
Query: 188 SFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERA 247
S +LL F PESPRYLC KGR +AHR LEKIA +N+ KLP G LV+ +T E +
Sbjct: 194 SIVLLLFYRLAPESPRYLCTKGRFTDAHRILEKIALLNQAKLPGGILVSDSTTGLDEESS 253
Query: 248 PPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLIS 307
LLS + + KS S F MLFSS+L +TT+LLW+L FGNSF YY ++LL S
Sbjct: 254 SLSHQPLLSL-ARKRVSSFKSAFSSFFMLFSSRLIKTTLLLWVLYFGNSFLYYGIILLTS 312
Query: 308 ELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFT 367
ELS CRS + QD NLYID FITSLAE+PG++L+AI VD GRK S+ MF
Sbjct: 313 ELSGRQDECRSATSSLENHQDENLYIDIFITSLAELPGIILSAITVDRFGRKRSMIFMFV 372
Query: 368 LSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410
+C+FLLPLV++QS +L T LFGARMC +G FT++ IY E+
Sbjct: 373 AACIFLLPLVSHQSAVLRTSFLFGARMCAIGTFTIACIYCPEL 415
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118546|ref|XP_002331389.1| predicted protein [Populus trichocarpa] gi|222873603|gb|EEF10734.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 232/410 (56%), Positives = 301/410 (73%), Gaps = 1/410 (0%)
Query: 1 MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSST 60
M ++ YT+DEAL +GFGK+Q VLAYAGLGW AEAME+M+LSFVGPTVKS+W LSS
Sbjct: 1 MDDEAPAYTLDEALACLGFGKFQGLVLAYAGLGWFAEAMELMLLSFVGPTVKSQWGLSSG 60
Query: 61 EESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLR 120
+ESL++T VFAG++VGAY+WGLV+DN GRR +GLLS+FSPNY +L+ +R
Sbjct: 61 QESLLSTVVFAGMLVGAYSWGLVSDNCGRRQAIHFSLPYIFQSGLLSAFSPNYESLVIIR 120
Query: 121 CLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 180
CLVG+GLG V SWFLEFVP +RG WMV+FS+FWT+G++ EA AW++M RL WRWL
Sbjct: 121 CLVGLGLGGSTVLCSWFLEFVPAPHRGKWMVVFSTFWTLGAIFEASLAWLVMQRLSWRWL 180
Query: 181 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 240
L SS+PS LL F G PESPRYLC+KGR +AH+ L+KIA +N+++LP G LV +
Sbjct: 181 LAFSSLPSIALLLFYGIVPESPRYLCMKGRINDAHKILQKIALLNQSELPPGMLVPDSTV 240
Query: 241 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYY 300
+ AP + LLSS + KS S F MLFSS L +TT+LLW+LLFGN F+YY
Sbjct: 241 GQEEKSAPSKYTPLLSST-RKVIVDFKSVFSSFFMLFSSTLIQTTLLLWVLLFGNVFSYY 299
Query: 301 AVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL 360
++LL SELSS +C S ++ S + Q+ +LYI+ F+TSLAE+PGLLL+AI+VD GRKL
Sbjct: 300 GIILLTSELSSQQGKCGSTILSSENLQNDSLYINVFVTSLAELPGLLLSAIIVDRLGRKL 359
Query: 361 SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410
S+ +M L C+FL PL+ S LTT +LFGARMCVMG+FT++ +YA E+
Sbjct: 360 SMALMLVLGCIFLFPLLFNVSANLTTAMLFGARMCVMGSFTIATLYAPEL 409
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224095100|ref|XP_002310345.1| predicted protein [Populus trichocarpa] gi|222853248|gb|EEE90795.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/410 (54%), Positives = 285/410 (69%), Gaps = 23/410 (5%)
Query: 1 MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSST 60
MA+ G YTVDEAL VGFGK+Q VL YAG+GWV+EAME+MILSFVGP V S+W L+S
Sbjct: 1 MADGGPRYTVDEALVTVGFGKFQFLVLLYAGMGWVSEAMEVMILSFVGPAVHSKWGLTSH 60
Query: 61 EESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLR 120
EESLITT VFAG++VGAY WG+++D YGRR GF A++T+ AG LS+F+PNYI L+ R
Sbjct: 61 EESLITTVVFAGMLVGAYTWGVISDKYGRRKGFFVTAIMTSVAGFLSAFAPNYIALLISR 120
Query: 121 CLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 180
CLVG G+G G V L+WFLEFVP NRG WMV+FS+FWT+G++ E AWIIMPRL WRWL
Sbjct: 121 CLVGFGIGGGPVLLAWFLEFVPAPNRGTWMVVFSAFWTVGTIFEGGLAWIIMPRLGWRWL 180
Query: 181 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 240
L LS++PSF+LL F PESPRYLCLKGR EA L+KIA++N +LP G +VA
Sbjct: 181 LALSALPSFLLLVFYTLTPESPRYLCLKGRKNEALIILKKIAKLNGKELPPGVVVA---- 236
Query: 241 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYY 300
G +G + L L++FS +L R+T+LLW+++F N+F+YY
Sbjct: 237 ------------------GNEIELQGNNHLPEMLIIFSPRLVRSTLLLWVVIFANAFSYY 278
Query: 301 AVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL 360
+VLL +EL+ C S P + N Y FITS AE PGL+L+A+++D GRKL
Sbjct: 279 GLVLLTTELNDRSNTCHQTKKQSQKPANIN-YKQVFITSFAEFPGLILSALVIDRLGRKL 337
Query: 361 SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410
S+ MF + C+FLLPLV +QS +TT LLFGAR C+ G FT+ IYA E+
Sbjct: 338 SMAAMFFVCCIFLLPLVVHQSTGVTTTLLFGARTCITGTFTIVYIYAPEL 387
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|90265074|emb|CAH67747.1| H0702G05.6 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/413 (52%), Positives = 297/413 (71%), Gaps = 7/413 (1%)
Query: 3 EQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEE 62
+Q Y+VD+AL GFG+YQ +L+YAG+G +AEAME+M+LSFVGP+V+ EW L+S +E
Sbjct: 4 DQSATYSVDDALLSSGFGRYQILILSYAGVGLIAEAMEMMLLSFVGPSVQLEWKLTSHQE 63
Query: 63 SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL 122
S+IT+ VF G+++GAY WG+V+DNYGRR GFL A+VT+GAG LS+F+PNY++LI+LR L
Sbjct: 64 SMITSIVFVGMLIGAYTWGVVSDNYGRRRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFL 123
Query: 123 VGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 182
VG+GLG G V SWFLEFVP RG WMV+FS+FWT+G++ EA AW +MP+ WRWLL
Sbjct: 124 VGIGLGGGPVLASWFLEFVPAPTRGTWMVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLA 183
Query: 183 LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 242
LS++PSF+LL F PESPR+LC+KGR EA LEK+A++N +LP+G+LV+ ++ +
Sbjct: 184 LSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMDVLEKMARLNNVQLPSGRLVSDKN-IE 242
Query: 243 TGERAPPELVHLLSSNGGNKT-TEGK----SGLSLFLMLFSSKLARTTILLWLLLFGNSF 297
E + E LL+ + T E K GLS+ L S KL R T+LLW+ FGN+F
Sbjct: 243 LDELSTSESTTLLADAEEDDTIIEDKVSSFGGLSV-AKLLSPKLIRATLLLWMTFFGNAF 301
Query: 298 AYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAG 357
+YY +VLL SELS+ + C + S H DA+LY + FI+S AEIPG L+A++VD G
Sbjct: 302 SYYGIVLLTSELSNGNRICAKEEVESIHSNDASLYKNVFISSFAEIPGSFLSAMIVDRIG 361
Query: 358 RKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410
RKLS+ M SC+FL PL+ +++ILT LFGAR+C+ +FT+ IYA E+
Sbjct: 362 RKLSMASMLFTSCVFLFPLIFSRTDILTRVSLFGARLCISASFTIVYIYAPEI 414
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224095094|ref|XP_002310344.1| predicted protein [Populus trichocarpa] gi|222853247|gb|EEE90794.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 224/410 (54%), Positives = 294/410 (71%), Gaps = 12/410 (2%)
Query: 1 MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSST 60
M + G YTVD+A+ +GFGK+Q FVL YAG+GWV+EAME+MILSF+GP VKS+WNL+S
Sbjct: 1 MTDGGPRYTVDDAILAMGFGKFQYFVLLYAGMGWVSEAMEMMILSFIGPAVKSDWNLTSQ 60
Query: 61 EESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLR 120
+ESLIT+ VFAG++VGAY+WG+V+D YGRR GFL A++T+GAG LS+F+PNYI L+ R
Sbjct: 61 QESLITSVVFAGMLVGAYSWGVVSDRYGRRKGFLVTAIITSGAGFLSAFAPNYIALLVFR 120
Query: 121 CLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 180
CLVG+GLG G V +WFLEFVP NRGMWMVI S+FWT G++ EA AWIIMPRL+WRWL
Sbjct: 121 CLVGLGLGGGPVLFAWFLEFVPAPNRGMWMVIISAFWTFGAIFEASLAWIIMPRLNWRWL 180
Query: 181 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 240
L +S++PSF LL F PESPRY CLKG+ +A R LEKIA+ N+ +LP G L
Sbjct: 181 LAVSALPSFFLLIFYVMTPESPRYFCLKGQKGDALRVLEKIAKQNRKELPLGALATDNEI 240
Query: 241 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYY 300
G+ P E G + G L L+L S KLAR+T+LLW++ FGN+F+YY
Sbjct: 241 ELQGKNIPIE---------GMDSDMGV--LKSLLLLISPKLARSTVLLWVVFFGNAFSYY 289
Query: 301 AVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL 360
+VLL +EL++ + C S + Y + FITS AE PGL+++A++VD GRKL
Sbjct: 290 GLVLLTTELNNRNNTCNHTKAQSDKSSAVD-YKEVFITSFAEFPGLIVSALIVDRIGRKL 348
Query: 361 SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410
S+ +F ++C+FLLPLV +QS +TT LLFGAR+C+ G FT+ IYA E+
Sbjct: 349 SMAALFFVACIFLLPLVVHQSPRITTILLFGARICITGTFTIVFIYAPEI 398
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242039569|ref|XP_002467179.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor] gi|241921033|gb|EER94177.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/420 (51%), Positives = 295/420 (70%), Gaps = 21/420 (5%)
Query: 4 QGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEES 63
Q YTVD+AL GFG++Q +L+YAG+G +AEAME+M+LSFVGP+V+ EW L+S +ES
Sbjct: 5 QSASYTVDDALLSSGFGRFQILILSYAGIGLIAEAMEMMLLSFVGPSVQLEWKLTSHQES 64
Query: 64 LITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLV 123
+IT+ VF G+++GAY+WG+V+DNYGRR GFL A+VT+GAG LS+F+PNY++LI+LR LV
Sbjct: 65 MITSVVFVGMLIGAYSWGVVSDNYGRRRGFLFTAIVTSGAGFLSAFAPNYLSLISLRFLV 124
Query: 124 GVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGL 183
G+GLG G V SWFLEFVP RG WMV+FS+FWT+G++ EA AW +MP+ WRWLL L
Sbjct: 125 GIGLGGGPVLGSWFLEFVPAPTRGTWMVVFSAFWTVGTILEASLAWTVMPKFGWRWLLAL 184
Query: 184 SSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR----- 238
S+IPSF+LL F PESPR+LC+KGRT EA LEK+A++N +LP+G+LV+ +
Sbjct: 185 SAIPSFLLLLFYAITPESPRFLCMKGRTTEAVDVLEKMARLNNVQLPSGRLVSDKNIELD 244
Query: 239 --------STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWL 290
+TL +G L S+ G + GK L + KL R T+LLW+
Sbjct: 245 EVSGSSESTTLLSGAEESDNLSEDRGSDFGGIKSVGK--------LLAPKLIRATLLLWM 296
Query: 291 LLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAA 350
FGN+FAYY +VLL SELS+ + C + S + +A+LY + FI+S AEIPG L+A
Sbjct: 297 AFFGNAFAYYGIVLLTSELSNGNRICAKQDVESVNSTNASLYKNVFISSFAEIPGSFLSA 356
Query: 351 ILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410
++VD GRKLS+ M SC+FL+PLV +++ILT LFGAR+C+ +FT+ IYA E+
Sbjct: 357 MIVDRFGRKLSMASMLFTSCVFLVPLVFSRTDILTRISLFGARLCISASFTIVYIYAPEI 416
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413934140|gb|AFW68691.1| hypothetical protein ZEAMMB73_097319 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/420 (51%), Positives = 292/420 (69%), Gaps = 21/420 (5%)
Query: 4 QGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEES 63
Q YTVD+AL GFG++Q +L+YAG+G +AEAME+M+LSFVGP+V+ EW L+S +ES
Sbjct: 14 QSASYTVDDALLSSGFGRFQILILSYAGIGLIAEAMEMMLLSFVGPSVQLEWKLTSHQES 73
Query: 64 LITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLV 123
+IT+ VF G+++GAY+WG+V+DNYGRR GFL A++T+GAG S+F+PNY++LI+LR LV
Sbjct: 74 MITSVVFVGMLIGAYSWGVVSDNYGRRRGFLFTAIMTSGAGFFSAFAPNYLSLISLRFLV 133
Query: 124 GVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGL 183
G+GLG G V SWFLEFVP RG WMV+FS+FWT+G++ EA AW IMP+ WRWLL L
Sbjct: 134 GIGLGGGPVLGSWFLEFVPAPTRGTWMVVFSAFWTVGTILEASLAWTIMPKFGWRWLLAL 193
Query: 184 SSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR----- 238
S++PSF+LL F PESPR+LC+KGRT EA LEK+A++N +LP+G+LV+ +
Sbjct: 194 SAVPSFLLLLFYAITPESPRFLCMKGRTTEAVDILEKMARLNNVQLPSGRLVSDKNIELD 253
Query: 239 --------STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWL 290
+TL G L S+ G + GK L + KL R T+LLW+
Sbjct: 254 EVSGSSESTTLLAGAEESDNLNEDQGSDFGGIKSVGK--------LLAPKLIRATLLLWM 305
Query: 291 LLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAA 350
FGN+FAYY +VLL SELS+ + C + S H +A+LY + FI+S AEIPG L+A
Sbjct: 306 AFFGNAFAYYGIVLLTSELSNGNRICAKEDVESVHSTNASLYKNVFISSFAEIPGSFLSA 365
Query: 351 ILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410
++VD GRK S+ M SC+FLLPLV +++ILT LFGAR+C+ +FT+ IYA E+
Sbjct: 366 MIVDRFGRKRSMASMLFTSCVFLLPLVFSRTDILTRISLFGARLCISASFTIVYIYAPEI 425
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 418 | ||||||
| TAIR|locus:2089270 | 500 | NiaP "nicotinate transporter" | 0.978 | 0.818 | 0.501 | 5.3e-104 | |
| ZFIN|ZDB-GENE-060526-336 | 549 | svopa "SV2 related protein hom | 0.550 | 0.418 | 0.387 | 2.9e-54 | |
| WB|WBGene00014021 | 520 | svop-1 [Caenorhabditis elegans | 0.605 | 0.486 | 0.342 | 4.2e-53 | |
| UNIPROTKB|E2QZ16 | 548 | SVOP "Uncharacterized protein" | 0.550 | 0.419 | 0.387 | 6.9e-53 | |
| UNIPROTKB|F6XK47 | 483 | SVOP "Uncharacterized protein" | 0.550 | 0.476 | 0.387 | 6.9e-53 | |
| UNIPROTKB|Q8N4V2 | 548 | SVOP "Synaptic vesicle 2-relat | 0.550 | 0.419 | 0.383 | 8.7e-53 | |
| UNIPROTKB|F1RGB1 | 548 | SVOP "Uncharacterized protein" | 0.550 | 0.419 | 0.387 | 1.1e-52 | |
| UNIPROTKB|G3MZU5 | 547 | SVOP "Synaptic vesicle 2-relat | 0.550 | 0.420 | 0.383 | 1.1e-52 | |
| UNIPROTKB|Q1JP63 | 548 | SVOP "Synaptic vesicle 2-relat | 0.550 | 0.419 | 0.383 | 1.1e-52 | |
| UNIPROTKB|F1NIB3 | 554 | SVOP "Uncharacterized protein" | 0.550 | 0.415 | 0.383 | 3.7e-52 |
| TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
Identities = 210/419 (50%), Positives = 270/419 (64%)
Query: 1 MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXX 60
MA+ +TVDEAL +GFGK+Q +VLAYAG+GWVAEAME+M+LSFVGP V+S WN
Sbjct: 1 MADGNTRFTVDEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSAR 60
Query: 61 XXXXXXXXVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLR 120
VFAG+++GAY+WG+V+D +GRR GF+ A+VT AG LS+FSPNY+ LI LR
Sbjct: 61 QESLITSVVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILR 120
Query: 121 CLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 180
CLVG+GLG G V SW+LEF+P +RG WMV+FS+FWT+G++ EA AW++MPRL WRWL
Sbjct: 121 CLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWL 180
Query: 181 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 240
L SS+PS +LL F + ESPRYL L+GR AEA LEKIA++NKT+LP G L + T
Sbjct: 181 LAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEALAILEKIARMNKTQLPPGVLSSELET 240
Query: 241 -LPTGERAPPELVHLLSSN-GGNKTTEXXXXXXXXXXXXXXXXA-------RTTIXXXXX 291
L + P E HLL + G A + T+
Sbjct: 241 ELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADKEPGFSLLALLSPTLMKRTLLLWVV 300
Query: 292 XFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAI 351
FGN+FAYY VVLL +EL++ RC + D N Y D FI S AE PGLL++A
Sbjct: 301 FFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNSNDVN-YRDVFIASFAEFPGLLISAA 359
Query: 352 LVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410
+VD GRK S+ M C+FLLPL+++QS +TT LLFG R+C+ AFTV IYA E+
Sbjct: 360 MVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITTVLLFGGRICISAAFTVVYIYAPEI 418
|
|
| ZFIN|ZDB-GENE-060526-336 svopa "SV2 related protein homolog a (rat)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 436 (158.5 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 90/232 (38%), Positives = 134/232 (57%)
Query: 8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXXXXXXXXX 67
+ V++A+ +GFG +Q + GL W+A+AME+MILS + P + EW
Sbjct: 68 FMVEDAVEAIGFGTFQWKLSILTGLSWMADAMEMMILSILAPQLHCEWALPSWEVALLTS 127
Query: 68 XVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
VF G+++ + WG ++D YGR+ G L T G+LS+F+P Y ++ LR LVG G+
Sbjct: 128 VVFIGMMISSSLWGNISDKYGRKTGLKMSVLWTLFYGILSAFAPIYGWILFLRALVGFGI 187
Query: 128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
G ++ + EF+P +R +++ FW +G+V E + A ++MP L WRWLL LS+IP
Sbjct: 188 GGAPQSVTLYAEFLPMRSRATCILLIEIFWALGTVFEVLLAILVMPTLGWRWLLALSTIP 247
Query: 188 SFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 238
FI AFL F PES RY L G +A L++IA N +P GKL+ R
Sbjct: 248 LFIF-AFLCFWLPESARYDVLTGNQEKALNTLKRIAAENNVPMPLGKLIVAR 298
|
|
| WB|WBGene00014021 svop-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 421 (153.3 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
Identities = 88/257 (34%), Positives = 141/257 (54%)
Query: 8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXXXXXXXXX 67
+TVDEA+ +GFG++Q + G+ W+A+AME+M+LS + P + EW
Sbjct: 67 FTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQALVTT 126
Query: 68 XVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
VF+G+++ + WG + D +GRR G LV G++S SP++ L+ R L G G+
Sbjct: 127 CVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFRGLTGFGI 186
Query: 128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
G ++ + EF+P + R +V+ SFW IG+V EA+ A+ +M WR L+ LSS+P
Sbjct: 187 GGVPQSVTLYAEFLPTAQRAKCVVLIESFWAIGAVFEALLAYFVMESFGWRALMFLSSLP 246
Query: 188 SFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERA 247
I + PES R+ G A L+ A++N+ +LP G+LV S+ G +
Sbjct: 247 LGIFAVASFWLPESARFDMASGHPERALETLQAAARMNRVQLPTGRLV---SSTKAGSES 303
Query: 248 PPELVHLLSSNGGNKTT 264
++ +LLS + KTT
Sbjct: 304 RGDIANLLSPDL-RKTT 319
|
|
| UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 421 (153.3 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
Identities = 90/232 (38%), Positives = 131/232 (56%)
Query: 8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXXXXXXXXX 67
+ V++A+ +GFGK+Q + GL W+A+AME+MILS + P + EW
Sbjct: 68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127
Query: 68 XVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
VF G++ + WG ++D YGR+ G L T G+LS+F+P Y ++ LR LVG G+
Sbjct: 128 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 187
Query: 128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
G ++ + EF+P R +++ FW IG+V E I A +MP L WRWLL LS++P
Sbjct: 188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWRWLLILSAVP 247
Query: 188 SFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 238
+L A L F PES RY L G +A L++IA N +P GKL+ R
Sbjct: 248 -LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 298
|
|
| UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 421 (153.3 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
Identities = 90/232 (38%), Positives = 131/232 (56%)
Query: 8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXXXXXXXXX 67
+ V++A+ +GFGK+Q + GL W+A+AME+MILS + P + EW
Sbjct: 3 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 62
Query: 68 XVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
VF G++ + WG ++D YGR+ G L T G+LS+F+P Y ++ LR LVG G+
Sbjct: 63 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 122
Query: 128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
G ++ + EF+P R +++ FW IG+V E I A +MP L WRWLL LS++P
Sbjct: 123 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWRWLLILSAVP 182
Query: 188 SFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 238
+L A L F PES RY L G +A L++IA N +P GKL+ R
Sbjct: 183 -LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 233
|
|
| UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 420 (152.9 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 89/232 (38%), Positives = 131/232 (56%)
Query: 8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXXXXXXXXX 67
+ V++A+ +GFGK+Q + GL W+A+AME+MILS + P + EW
Sbjct: 68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127
Query: 68 XVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
VF G++ + WG ++D YGR+ G L T G+LS+F+P Y ++ LR LVG G+
Sbjct: 128 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 187
Query: 128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
G ++ + EF+P R +++ FW IG+V E + A +MP L WRWLL LS++P
Sbjct: 188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVP 247
Query: 188 SFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 238
+L A L F PES RY L G +A L++IA N +P GKL+ R
Sbjct: 248 -LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 298
|
|
| UNIPROTKB|F1RGB1 SVOP "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 421 (153.3 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 90/232 (38%), Positives = 131/232 (56%)
Query: 8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXXXXXXXXX 67
+ V++A+ +GFGK+Q + GL W+A+AME+MILS + P + EW
Sbjct: 68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127
Query: 68 XVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
VF G++ + WG ++D YGR+ G L T G+LS+F+P Y ++ LR LVG G+
Sbjct: 128 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 187
Query: 128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
G ++ + EF+P R +++ FW IG+V E I A +MP L WRWLL LS++P
Sbjct: 188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWRWLLLLSAVP 247
Query: 188 SFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 238
+L A L F PES RY L G +A L++IA N +P GKL+ R
Sbjct: 248 -LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 298
|
|
| UNIPROTKB|G3MZU5 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 420 (152.9 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 89/232 (38%), Positives = 131/232 (56%)
Query: 8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXXXXXXXXX 67
+ V++A+ +GFGK+Q + GL W+A+AME+MILS + P + EW
Sbjct: 67 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 126
Query: 68 XVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
VF G++ + WG ++D YGR+ G L T G+LS+F+P Y ++ LR LVG G+
Sbjct: 127 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 186
Query: 128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
G ++ + EF+P R +++ FW IG+V E + A +MP L WRWLL LS++P
Sbjct: 187 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVP 246
Query: 188 SFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 238
+L A L F PES RY L G +A L++IA N +P GKL+ R
Sbjct: 247 -LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 297
|
|
| UNIPROTKB|Q1JP63 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 420 (152.9 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 89/232 (38%), Positives = 131/232 (56%)
Query: 8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXXXXXXXXX 67
+ V++A+ +GFGK+Q + GL W+A+AME+MILS + P + EW
Sbjct: 68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127
Query: 68 XVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
VF G++ + WG ++D YGR+ G L T G+LS+F+P Y ++ LR LVG G+
Sbjct: 128 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 187
Query: 128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
G ++ + EF+P R +++ FW IG+V E + A +MP L WRWLL LS++P
Sbjct: 188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVP 247
Query: 188 SFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 238
+L A L F PES RY L G +A L++IA N +P GKL+ R
Sbjct: 248 -LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 298
|
|
| UNIPROTKB|F1NIB3 SVOP "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
Identities = 89/232 (38%), Positives = 131/232 (56%)
Query: 8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXXXXXXXXX 67
+ V++A+ +GFGK+Q + GL W+A+AME+MILS + P + EW
Sbjct: 74 FMVEDAVEAIGFGKFQWKLSVITGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 133
Query: 68 XVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
VF G++ + WG ++D YGR+ G L T G+LS F+P Y ++ LR LVG G+
Sbjct: 134 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSGFAPIYSWILVLRGLVGFGI 193
Query: 128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
G ++ + EF+P R +++ FW IG+V E + A ++MP L WRWLL LS++P
Sbjct: 194 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVLVMPTLGWRWLLILSALP 253
Query: 188 SFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 238
+L A L F PES RY L G +A L++IA N +P GKL+ R
Sbjct: 254 -LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 304
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q940M4 | OCT7_ARATH | No assigned EC number | 0.5309 | 0.9760 | 0.816 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 418 | |||
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-61 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 4e-30 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 3e-25 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 7e-22 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 9e-18 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 6e-17 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-16 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 5e-12 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 7e-09 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 2e-08 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 6e-07 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 2e-06 | |
| TIGR00711 | 485 | TIGR00711, efflux_EmrB, drug resistance transporte | 4e-06 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 5e-05 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 2e-04 | |
| TIGR00710 | 385 | TIGR00710, efflux_Bcr_CflA, drug resistance transp | 3e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-04 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 206 bits (527), Expect = 2e-61
Identities = 117/419 (27%), Positives = 189/419 (45%), Gaps = 55/419 (13%)
Query: 2 AEQGHVYTVDEALTHVGFGKYQCFVLAYAGLG--WVAEAMEIMILSFV--GPTVKSEWNL 57
E + VD+ G C L + LG ++ S+ T+ +EW+L
Sbjct: 65 PESCLRFMVDQWANPSLLG---CEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIVTEWDL 121
Query: 58 SSTEE---SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYI 114
+ L + F G+++G++ +G ++D +GR+ L LVTA +G+L++FSPNY
Sbjct: 122 VCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYT 181
Query: 115 TLITLRCLVGVGLGSGHVF-LSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP 173
+ R LVG+G+G V + EF+P R + + F+++G V + A+ I
Sbjct: 182 VFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP- 240
Query: 174 RLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGK 233
DWRWL S+P+F+ F PESPR+L +GR EA + L++IA++N KLP
Sbjct: 241 --DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEV 298
Query: 234 LVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLF 293
L L + K S + + L +TT+ L +L F
Sbjct: 299 LS------------LSLEKDL---------SSSKKQYSFLDLFRTPNLRKTTLCLMMLWF 337
Query: 294 GNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILV 353
+F+YY +VL + L N+Y+D FI+ L E+P L+ +L+
Sbjct: 338 TTAFSYYGLVLDLGNL------------------GGNIYLDLFISGLVELPAKLITLLLI 379
Query: 354 DTAGRKLSITIMFTL--SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410
D GR+ ++ L L LL V L T L + + AF + +Y AE+
Sbjct: 380 DRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 4e-30
Identities = 85/330 (25%), Positives = 142/330 (43%), Gaps = 26/330 (7%)
Query: 14 LTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGL 73
+ G G++Q + GL +A+ +E+ ++ FV P+ + + + + + ++ V+ G+
Sbjct: 156 IQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGM 215
Query: 74 VVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HV 132
+VGA+ WG +AD GR+ L V SSF Y + R L G G+G +
Sbjct: 216 MVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPI 275
Query: 133 FLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG---------- 182
S+F EF+ RG + FW IG + A AW I+P W + +G
Sbjct: 276 VFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRV 335
Query: 183 ---LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRS 239
+ + P + L F PESPR+ G+ EA L+ I N + + V +
Sbjct: 336 FVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVN 395
Query: 240 TLPTGERAPPELVHLLSSNGG-------NKTTEGKSGLSLFLMLFSSKLARTTILLWLLL 292
+ T + EL+ + S G +EG FL F+ ++ TI L +
Sbjct: 396 HIKTIHQE-DELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVW 454
Query: 293 FGNSFAYYAVVL----LISELSSLDTRCRS 318
F SF YY + + +I L + D +
Sbjct: 455 FTLSFGYYGLSVWFPDMIKHLQADDYAALT 484
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 89/394 (22%), Positives = 150/394 (38%), Gaps = 48/394 (12%)
Query: 22 YQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWG 81
YQ + + L + + ++ + F P + +EW L + + ++ G+ GA +G
Sbjct: 14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFG 73
Query: 82 LVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFL-EF 140
+AD GRR L L+ + LL + + N L+ LR L G+GLG L+ + E+
Sbjct: 74 PLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEY 133
Query: 141 VPPSNRGMWMVIFSSFWTIG-SVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG-FQ 198
P RG + + + IG +V + W+I P WR L + I +LL L F
Sbjct: 134 APKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI-PVFGWRSLFYVGGIAPLLLLLLLMRFL 192
Query: 199 PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSN 258
PES +L K R R + IA P + + +
Sbjct: 193 PESIDFLVSK-RPETVRRIVNAIA-------------------PQMQAEAQSALPEQKAT 232
Query: 259 GGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS 318
G K S+F LF K AR T+LLWLL F Y + + +L
Sbjct: 233 QGTKR-------SVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGF--- 282
Query: 319 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT 378
+ + + + G ++ L D G ++ ++ L +F + + +
Sbjct: 283 --------SLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV-TALLLLLGAVFAVLVGS 333
Query: 379 YQSN---ILTTGLLFGARMCVMGAFTVSLIYAAE 409
+ +L G + G V G + A
Sbjct: 334 TLFSPTLLLLLGAIAG--FFVNGGQSGLYALMAL 365
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 7e-22
Identities = 80/374 (21%), Positives = 134/374 (35%), Gaps = 64/374 (17%)
Query: 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL 105
F T S+ LI + G ++G+ G + D +GR+ L ++ L
Sbjct: 32 FGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGAL 91
Query: 106 LSSFSP--NYITLITLRCLVGVGLGSGHVFLSWFL-EFVPPSNRGMWMVIFSSFWTIGSV 162
L F+ ++ LI R +VG+G+G V + ++ E P RG ++ T G +
Sbjct: 92 LQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGIL 151
Query: 163 SEAIGAWI------IMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHR 216
+ A I WR LGL +P+ +LL L F PESPR+L LKG+ EA
Sbjct: 152 ---VAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARA 208
Query: 217 ALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLML 276
L K+ V+ E+ S + E S L LF
Sbjct: 209 VLAKLRGVSDVD--------------------QEIQEEKDSLERSVEAEKASWLELFRGK 248
Query: 277 FSSKLARTTILLWLLLFG---NSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYI 333
+ ++L + N+ YY+ + +
Sbjct: 249 TVRQRLLMGVMLQIFQQLTGINAIFYYSPTIF----------------------ETLGLS 286
Query: 334 DEFITSLAE----IPGLLLAAILVDTAGRK-LSITIMFTLSCLFLLPLVT--YQSNILTT 386
D + ++ +A LVD GR+ L + ++ FL+ V +
Sbjct: 287 DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGA 346
Query: 387 GLLFGARMCVMGAF 400
G++ + + AF
Sbjct: 347 GIVAIVFILLFIAF 360
|
Length = 449 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 9e-18
Identities = 79/407 (19%), Positives = 154/407 (37%), Gaps = 63/407 (15%)
Query: 13 ALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAG 72
H+ ++ F A+ LGW+ +A + +++ V V E+ L++ + + + ++
Sbjct: 2 WYRHLTRAQWNAFSAAW--LGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALIS 59
Query: 73 LVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHV 132
GA +GL D YGRR+ + ++ + L F+P YIT+ R ++G+G+G +
Sbjct: 60 RWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYG 119
Query: 133 FLSWF-LEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD--WRWLLGLSSIPSF 189
+ + +E P R + S + +G+V A +++P WR L +S +P
Sbjct: 120 SSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPII 179
Query: 190 ILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPP 249
L PE+ + E H + + +A
Sbjct: 180 FALWLRKNIPEAEDW-------KEKHAGKALVRTMVDILYGGEHRIANI----------- 221
Query: 250 ELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISEL 309
+M ++ + ++ W F Y V++L + L
Sbjct: 222 ------------------------VMTLAAAMVQSAGKRWPT-----FVYLVVLVLFANL 252
Query: 310 SS------LDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSIT 363
S L T ++ L S H + +++ I G + L D GR+ +
Sbjct: 253 YSHPIQDLLPTYLKADLGLSPHTVANIV----VFSNIGAIVGGCVFGFLGDWLGRRKAYV 308
Query: 364 IMFTLSCLFLLPLVTYQSNILTTGL-LFGARMCVMGAFTVSLIYAAE 409
L ++P+ +N+ GL LF +M V G + + + E
Sbjct: 309 CSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGE 355
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 6e-17
Identities = 87/364 (23%), Positives = 135/364 (37%), Gaps = 49/364 (13%)
Query: 57 LSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL--VTAGAG-LLSSFSPNY 113
SS+ L+ + G +GA G ++D +GR+ L AL V L++F+ +
Sbjct: 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSV 127
Query: 114 ITLITLRCLVGVGLGSGHVFLSWFL-EFVPPSNRGMWMVIFSSFWTIGSVSEAI---GAW 169
LI R L+G+G+G + +L E P + RG ++ T G + G
Sbjct: 128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKV 187
Query: 170 IIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKL 229
+ L WR LGL IP+ +L L F PESPR+L KGR EA ++L ++ T
Sbjct: 188 SLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARL---RGTSG 244
Query: 230 PNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILL- 288
+ +L+ + V S SLF + ++
Sbjct: 245 EDKELLDELELIDIKRSIEKRSV-------------QPSWGSLFSSTRRIRRRLFLGVVL 291
Query: 289 -WLLLF--GNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG 345
W F N+ YY+ + + S D + S I
Sbjct: 292 QWFQQFTGINAIMYYSPTIFENAGVSTDH----AFLVS------------IIVGAVNFAF 335
Query: 346 LLLAAILVDTAGRK--LSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVS 403
+A LVD GR+ L I CLF+L ++ TG + V F +
Sbjct: 336 TFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGA---SFVTGSSKSSGN-VAIVFILL 391
Query: 404 LIYA 407
I
Sbjct: 392 FIAF 395
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 3e-16
Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 1/172 (0%)
Query: 27 LAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN 86
L LG+ ++ +LS P + + LS+++ LI ++ G +G+ G ++D
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 87 YGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHV-FLSWFLEFVPPSN 145
+GRR L L+ A LL +F+ + L+ R L+G+G G+ + + E+ PP
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120
Query: 146 RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGF 197
RG + +FS+ + +G++ + ++ L WRWL + +I +L L F
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF 172
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 5e-12
Identities = 34/167 (20%), Positives = 70/167 (41%), Gaps = 1/167 (0%)
Query: 32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRM 91
++A ++ + + + +S TE L+ T+ G + G ++D +GRR
Sbjct: 4 AAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRR 63
Query: 92 GFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWM 150
L L+ A LL F+ + L+ LR L G+G G+ + ++ PP RG +
Sbjct: 64 VLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRAL 123
Query: 151 VIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGF 197
+ S+ + +G+ + ++ WR + +I + +
Sbjct: 124 GLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAAL 170
|
Length = 346 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 7e-09
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 34/203 (16%)
Query: 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL 105
FV P SE + +++ S G ++G G ++ +GRR A++ + L
Sbjct: 42 FVAPQNLSE-SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISAL 100
Query: 106 LSSF---------SPNYITLITL---RCL--VGVGLGSGHVFLSWFLEFVPPSNRGMWMV 151
S++ N + R + +GVGL S + + E P RG +V
Sbjct: 101 GSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASM-LSPMYIAEIAPAHIRGK-LV 158
Query: 152 IFSSF-------------WTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQ 198
F+ F + I +A +W+ WR++ +IP+ + L L F
Sbjct: 159 SFNQFAIIFGQLVVYFVNYFIARSGDA--SWLNT--DGWRYMFASEAIPALLFLMLLYFV 214
Query: 199 PESPRYLCLKGRTAEAHRALEKI 221
PE+PRYL +G+ +A L KI
Sbjct: 215 PETPRYLMSRGKQEQAEGILRKI 237
|
Length = 479 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 15/184 (8%)
Query: 32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRM 91
L V ++ LSF P ++ + LS+ + + ++ G VVG + G + D +G R
Sbjct: 1 LVTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK 60
Query: 92 GFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL-----GSGHVFLSWFLEFVPPSNR 146
++ L +F+ Y++L LR L+G G + SWF P S R
Sbjct: 61 TLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWF----PASER 116
Query: 147 GMWMVIFSSFWTIGSV-SEAIGAWIIMPRLDWRWLLGLSSIPSFIL----LAFLGFQPES 201
+ IF+S +G + + WI++ W+W + + I L F+ P+
Sbjct: 117 ATAVSIFNSAQGLGGIIGGPLVGWILI-HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQK 175
Query: 202 PRYL 205
++L
Sbjct: 176 AKWL 179
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 6e-07
Identities = 40/169 (23%), Positives = 78/169 (46%), Gaps = 11/169 (6%)
Query: 30 AGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGR 89
A LG++ + + ++++ V V+ E+ L++ + + + ++ F G G + D YGR
Sbjct: 25 AWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGR 84
Query: 90 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLG------SGHVFLSWFLEFVPP 143
R+ + ++ + L F+P Y TL R ++G+G+ + +V SW P
Sbjct: 85 RLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESW-----PK 139
Query: 144 SNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL 192
R S ++IG+V A +++P WR L + +P L
Sbjct: 140 HLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFAL 188
|
Length = 496 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 41/174 (23%), Positives = 63/174 (36%), Gaps = 24/174 (13%)
Query: 44 LSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGA 103
+ P + E LS T+ L+ +S + + G V+D R+ FL L+
Sbjct: 14 FALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRV-FLPIGLILCAI 72
Query: 104 -GLLSSFSPNYITLITLRCLVGV--GLG---SGHVFLSWFLEFVPPSNRGMWMVIFSSFW 157
L FS + + L L G+ G+G G WF S RG W+ SFW
Sbjct: 73 VNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWF----SRSERGTWV----SFW 124
Query: 158 TIGS-VSEAIGAWIIMP----RLDWRWLLGLSS----IPSFILLAFLGFQPESP 202
V + +++ W W+ + I S I L P+S
Sbjct: 125 NCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC 178
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 7/176 (3%)
Query: 32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRM 91
LG ++ I++ PT+ + S ++ + TS + G +A +G R
Sbjct: 9 LGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRR 68
Query: 92 GFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLG--SGHVFLSWFLEFVPPSNRGMW 149
FL LL +PN +I R + G G G F + + PP RG
Sbjct: 69 LFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIY-PPEKRGRA 127
Query: 150 MVIFSSFWTIGSVSEAI-GAWIIMPRLDWRWLLGLSSIP--SFILLAFLGFQPESP 202
M I+ + G WII WRW+ ++ +++AF + P
Sbjct: 128 MAIWGLTVLVAPALGPTLGGWII-ENYHWRWIFLINVPIGIIVVVVAFFILPRDKP 182
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 5e-05
Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 9/180 (5%)
Query: 30 AGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGR 89
A LG+V + + M++ ++ +K++ L+ E + + T+ F G G +GL+AD +GR
Sbjct: 23 AWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGR 82
Query: 90 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWF-LEFVPPSNRGM 148
+ + + + LS + I L R +VG+G+ + S + +E P +
Sbjct: 83 KPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSK 142
Query: 149 WMVIFSSFWTIGSVSEAIGAWIIMPRL----DWRWLLGLSSIPSFILLAFLGFQPESPRY 204
S + IG++ A MP WR + +P +++ PES +
Sbjct: 143 ASAFLVSGFGIGNIIAA----YFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEW 198
|
Length = 426 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 87/386 (22%), Positives = 142/386 (36%), Gaps = 73/386 (18%)
Query: 18 GFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTV-----KSEWNLSSTEESLITTSVFAG 72
FG + AG+G+ ++ ++ +S V + + L S+ + + S G
Sbjct: 9 PFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIG 68
Query: 73 LVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNY------ITLITLRCLVGVG 126
+ G +G +AD GR+ + E ++ A + S SP TL R +GVG
Sbjct: 69 TLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVG 128
Query: 127 LGSGHVFLSWFL--EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM------------ 172
+G G LS + EF RG M + G ++ AI A I++
Sbjct: 129 IG-GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD 187
Query: 173 ---------PRLD--WRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKI 221
P +D WR L+G ++P+ + L F PE+PRY + E
Sbjct: 188 EASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVE-------Q 240
Query: 222 AQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKL 281
A + + + K+ A + E+A + +S T K L
Sbjct: 241 AASDMSAVLQVKIEAEPDEV---EKASTAVEVPKASWSDFFTHFFKW--RHGKHLLG--- 292
Query: 282 ARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLA 341
T W LL A+Y V L + S + +S N Y + + T++
Sbjct: 293 ---TAGSWFLL---DIAFYGVNLNQKVILSA-------IGYSPPAATNNAYEELYKTAVG 339
Query: 342 EI--------PGLLLAAILVDTAGRK 359
+ PG + LVD GRK
Sbjct: 340 NLIIALAGTVPGYWVTVFLVDIIGRK 365
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Query: 63 SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL 122
+ T G G WG ++D YGRR L + A + L + S N TL+ LR +
Sbjct: 43 QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFV 102
Query: 123 VGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWT--IGSVSEAIGAWIIMPRLDWRWL 180
G +G V + + P + +V+ +G +I++ L W +
Sbjct: 103 QAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV-WLSWHAI 161
Query: 181 LGLSSIPSFILLA 193
S+ +L A
Sbjct: 162 FAFLSLAGILLSA 174
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 2/174 (1%)
Query: 26 VLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD 85
+L A ++ +L+++ ++ LS+ E L+ + G ++GA GL++D
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236
Query: 86 NYGRRMGFLGEALVTAGAG-LLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPP 143
GRR L L+ A G LL + +P+ L+ L+G GLG L+ E PP
Sbjct: 237 RLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPP 296
Query: 144 SNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGF 197
RG +F++F ++G + A +++ + + + + + + L
Sbjct: 297 EARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 418 | |||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.98 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.98 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.98 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.97 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.97 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.97 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.97 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.97 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.97 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.97 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.97 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.97 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.97 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.97 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.97 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.97 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.97 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.96 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.96 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.96 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.96 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.96 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.96 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.96 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.96 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.96 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.96 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.96 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.96 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.96 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.96 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.95 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.95 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.95 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.95 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.94 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.94 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.94 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.93 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.93 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.93 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.93 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.93 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.93 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.92 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.92 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.92 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.92 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.91 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.91 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.91 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.9 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.9 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.89 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.89 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.88 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.86 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.85 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.83 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.82 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.8 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.8 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.79 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.77 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.77 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.75 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.75 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.75 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.74 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.74 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.68 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.65 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.65 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.65 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.63 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.63 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.62 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.62 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.6 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.6 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.59 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.59 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.59 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.58 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.58 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.56 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.56 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.56 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.55 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.55 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.54 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.53 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.53 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.53 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.53 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.52 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.52 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.51 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.5 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.47 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.47 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.46 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.45 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.45 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.44 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.44 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.44 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.44 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.44 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.43 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.41 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.41 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.41 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.41 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.4 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.4 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.4 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.39 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.39 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.39 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.38 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.38 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.38 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.37 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.37 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.35 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.34 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.34 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.33 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.32 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.3 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.3 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.28 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.28 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.27 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.27 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.26 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.25 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.25 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.25 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.25 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.24 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.23 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.22 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.21 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.21 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.2 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.19 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.17 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.15 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.13 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.13 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.13 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.12 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.11 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.11 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.1 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.1 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.1 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.09 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.09 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.08 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.08 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.06 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.04 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 99.04 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.03 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.02 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.99 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.99 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.98 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.97 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.96 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.92 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.92 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.92 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.89 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.88 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.87 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.84 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.83 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.83 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.82 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.81 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.79 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.78 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.77 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.74 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.72 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.7 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.7 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.67 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.67 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.66 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.64 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.62 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.54 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.52 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.44 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.43 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.41 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.41 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.3 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.26 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.25 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.21 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.21 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.2 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.18 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.17 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.1 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.04 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.99 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.99 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.95 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.83 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.8 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.8 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.65 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.64 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.45 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.44 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.44 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.17 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.11 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.05 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.0 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.8 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 96.75 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 96.74 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.66 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.65 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.51 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.47 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 96.27 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.19 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 94.98 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 94.88 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 94.8 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 94.38 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 91.43 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 90.77 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 86.91 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 85.86 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 85.51 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 84.61 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 81.8 |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=327.26 Aligned_cols=406 Identities=24% Similarity=0.386 Sum_probs=310.8
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchH
Q 014820 12 EALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRM 91 (418)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 91 (418)
+..++.+.++++|.+++++.++.+..+++...++..+|.+.+++|++..+.+++.+++.++++++++++|+++||+|||+
T Consensus 154 ~~l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~ 233 (742)
T TIGR01299 154 LIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQ 233 (742)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 34455667888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 014820 92 GFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWI 170 (418)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 170 (418)
+++++.++.+++.++++++++++.++++|++.|++.|+. ++..+++.|++|+++||+.+++...+..+|.++++.++..
T Consensus 234 ~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~ 313 (742)
T TIGR01299 234 CLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWA 313 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 8888999999999999999999999999999999988766
Q ss_pred hhcC-------------cchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCC--CCCccc
Q 014820 171 IMPR-------------LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKL--PNGKLV 235 (418)
Q Consensus 171 l~~~-------------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 235 (418)
+... .+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++++.|.... +.....
T Consensus 314 il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~ 393 (742)
T TIGR01299 314 IIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFS 393 (742)
T ss_pred HHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHH
Confidence 5532 3689999888888777777788899999999999999999999988876554221 100000
Q ss_pred cc-CCC--CCCCCCCCccchhhcccC-CCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014820 236 AR-RST--LPTGERAPPELVHLLSSN-GGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSS 311 (418)
Q Consensus 236 ~~-~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (418)
.+ .+. ..++..+.++......+. ......+....+.++++++++++++.++.+++.+++..+.||++..|.|.+..
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~ 473 (742)
T TIGR01299 394 VNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIK 473 (742)
T ss_pred HHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000 000000000000000000 00000011122346788999999999999999999999999999999998754
Q ss_pred ccc--------------------------------------------------------cccCCCcc-------------
Q 014820 312 LDT--------------------------------------------------------RCRSPLMF------------- 322 (418)
Q Consensus 312 ~~~--------------------------------------------------------~~~~~~~~------------- 322 (418)
... .|+..+..
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 553 (742)
T TIGR01299 474 HLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFID 553 (742)
T ss_pred HHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhh
Confidence 310 00000000
Q ss_pred ----------------------------CCC-------CCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHH
Q 014820 323 ----------------------------SHH-------PQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFT 367 (418)
Q Consensus 323 ----------------------------~~~-------~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~ 367 (418)
... .+....+....+.+++.++|.+++|+++||+|||+++.++.+
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~ 633 (742)
T TIGR01299 554 TLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMV 633 (742)
T ss_pred hhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 000 001123555667789999999999999999999999999999
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 368 LSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
+.+++.+++.+..+....+++.++.+++.++.++..+++++|++|++.|+
T Consensus 634 lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rg 683 (742)
T TIGR01299 634 LSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRA 683 (742)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 99999888887665555556666777777788899999999999999996
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=280.37 Aligned_cols=400 Identities=40% Similarity=0.627 Sum_probs=343.9
Q ss_pred cHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhc
Q 014820 9 TVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYG 88 (418)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G 88 (418)
..++.....++++++|...+...+++....+.....+.+.|...+..|.+..+..++......|..+++..+|.++|++|
T Consensus 62 tv~ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~g 141 (528)
T KOG0253|consen 62 TVDEAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIG 141 (528)
T ss_pred eehhhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhh
Confidence 34566677788999999999999999999888888888899999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 014820 89 RRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGA 168 (418)
Q Consensus 89 rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 168 (418)
||+.+.+..+...+..++.+.++|+..+.+.|.+.|+|.|+.|...++-.|..|..+|...+-.. ..+.+|.+....+.
T Consensus 142 rr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~la 220 (528)
T KOG0253|consen 142 RRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLA 220 (528)
T ss_pred cchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888888889999999999988888 99999999999999
Q ss_pred HHhhcCcchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCC
Q 014820 169 WIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAP 248 (418)
Q Consensus 169 ~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (418)
.....++|||+.....+.+..+.....+++||+|++...+++.+++.+.+++++..|+...|......+.+++.+++...
T Consensus 221 w~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~ 300 (528)
T KOG0253|consen 221 WGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESD 300 (528)
T ss_pred HHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhc
Confidence 99999999999998888887778888899999999999999999999999999999998877655444333222221111
Q ss_pred ccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCc------c
Q 014820 249 PELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLM------F 322 (418)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 322 (418)
. ++.+.+..++...+..+++.+..+|..+..+..++.+.+.||+.......+.+....|+.... +
T Consensus 301 ------~---~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e 371 (528)
T KOG0253|consen 301 ------L---DDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELE 371 (528)
T ss_pred ------h---hhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHH
Confidence 1 111223334556678899999999999999999999999999999988888766554433321 1
Q ss_pred ---CCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhh
Q 014820 323 ---SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGA 399 (418)
Q Consensus 323 ---~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 399 (418)
....+...-+....+..+...+|.++.++++||+|||+.+..++++.+++.+++....+......+.+...++..+.
T Consensus 372 ~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~ 451 (528)
T KOG0253|consen 372 TRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGA 451 (528)
T ss_pred hhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhch
Confidence 13455566677888889999999999999999999999999999999999999988777767778888899999999
Q ss_pred hHhHhhhhccccccccccC
Q 014820 400 FTVSLIYAAEVKLMTLFTV 418 (418)
Q Consensus 400 ~~~~~~~~~e~~p~~~R~~ 418 (418)
+.+.|+|+.|+||+.+|++
T Consensus 452 fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 452 FQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred heEEEEecCcccchhhhhc
Confidence 9999999999999999974
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=285.47 Aligned_cols=367 Identities=21% Similarity=0.260 Sum_probs=263.8
Q ss_pred HhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc-----CCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhc
Q 014820 14 LTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEW-----NLSSTEESLITTSVFAGLVVGAYAWGLVADNYG 88 (418)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G 88 (418)
.++.+.++++++.+.++.++.+..+++...++...|.+.+++ +.+..+.+++.+.+.+++.++++++|+++||+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~G 84 (502)
T TIGR00887 5 ADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLG 84 (502)
T ss_pred hhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455667888999999999999999999999999988887642 345557799999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHH
Q 014820 89 RRMGFLGEALVTAGAGLLSSFSPN------YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGS 161 (418)
Q Consensus 89 rr~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 161 (418)
||+++.++.++..++.++++++++ ++.++++|++.|++.|.. +....++.|++|+++||+++++.+.+..+|.
T Consensus 85 rr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~ 164 (502)
T TIGR00887 85 RKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGI 164 (502)
T ss_pred cHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Confidence 999999999999999988888765 789999999999999998 8888999999999999999999999999999
Q ss_pred HHHHHHHHHhhc-----------------------CcchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHH-HHHH
Q 014820 162 VSEAIGAWIIMP-----------------------RLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAE-AHRA 217 (418)
Q Consensus 162 ~~~~~~~~~l~~-----------------------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 217 (418)
.+++.++..+.. .++||+.+.+.++++++..+..+++||+|+|+..+++.++ +.+.
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~ 244 (502)
T TIGR00887 165 LAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASD 244 (502)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHH
Confidence 999888765431 2479999988888888777777889999999988777643 4444
Q ss_pred HHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhch----hhHHHHHHHHHHHH
Q 014820 218 LEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSS----KLARTTILLWLLLF 293 (418)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~ 293 (418)
..+..+.+.+ ++ .++.++.+ + + ++....++++++++ +.++..+.....++
T Consensus 245 ~~~~~~~~~~---~~------~~~~~~~~-------------~--~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 298 (502)
T TIGR00887 245 MSAVLQVKIE---AE------PDEVEKAS-------------T--A--VEVPKASWSDFFTHFFKWRHGKHLLGTAGSWF 298 (502)
T ss_pred HHHHhccccc---cC------cccccchh-------------c--c--ccchhhhHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4443321110 00 00000000 0 0 00111246666653 23334444455556
Q ss_pred HHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChh------------HHHHHHHHHhhhhHHHHHHHHHHhhhchhHH
Q 014820 294 GNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDAN------------LYIDEFITSLAEIPGLLLAAILVDTAGRKLS 361 (418)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~ 361 (418)
...+.+|+...+.|.+..+.+ .+... ......+..++.+++.+++++++||+|||+.
T Consensus 299 ~~~~~~y~~~~~~p~i~~~~G-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~ 367 (502)
T TIGR00887 299 LLDIAFYGVNLNQKVILSAIG-----------YSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPI 367 (502)
T ss_pred HHHHHHHccccccHHHHHHHc-----------CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhH
Confidence 667788888888888775443 22111 1112333445667788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhch---hHHHHHHHHH-HHHHHHhhhHhHhhhhcccccccccc
Q 014820 362 ITIMFTLSCLFLLPLVTYQS---NILTTGLLFG-ARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 362 l~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
++++..+++++++++....+ ........++ ..++..+..+..+.+.+|++|++.|+
T Consensus 368 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~ 427 (502)
T TIGR00887 368 QLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRS 427 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHH
Confidence 98888877777666554211 1111122222 22223345577888999999999997
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=261.01 Aligned_cols=349 Identities=19% Similarity=0.167 Sum_probs=281.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHH
Q 014820 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL 98 (418)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 98 (418)
.+++|++++...++++...++.+..++...|.+.++.++|.+|.|++.+.+++.|.++.++.|.++||.++|+.+.++++
T Consensus 23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi 102 (448)
T COG2271 23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHH--HHhhcCc
Q 014820 99 VTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGA--WIIMPRL 175 (418)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~ 175 (418)
+.++..++++++++.+.+.+.-++.|+.+|.. |++...+..|+|+++||+..++++++.++|+.+.|++. +++..+.
T Consensus 103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~ 182 (448)
T COG2271 103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG 182 (448)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999998 99999999999999999999999999999999999999 8888888
Q ss_pred chHHHHHHhHHHHHHH-HHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhh
Q 014820 176 DWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHL 254 (418)
Q Consensus 176 ~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (418)
+||..|++.+++++++ ++.++..+|+|+..- -++.+|-++.....+ +
T Consensus 183 ~w~~~f~~pgiiaiival~~~~~~rd~Pqs~G-LP~ie~~~~d~~e~~--------------------~----------- 230 (448)
T COG2271 183 GWRAAFYFPGIIAIIVALILLFLLRDRPQSEG-LPPIEEYRGDPLEIY--------------------E----------- 230 (448)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCCccccC-CCCHHHhhcCchhhh--------------------h-----------
Confidence 9999999999998887 455666788875210 011111100000000 0
Q ss_pred cccCCCCCcccccc-hhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHH
Q 014820 255 LSSNGGNKTTEGKS-GLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYI 333 (418)
Q Consensus 255 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (418)
++++++.-. ...-++-++++ |.+|.+++..+...+.=|++..|.|.|+.+.. +.+..++..
T Consensus 231 -----~~~~~~~ls~~~i~~~YVL~N---k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k----------~~s~~~a~~ 292 (448)
T COG2271 231 -----EEKENEGLTAWQIFVKYVLKN---KLIWLLALANVFVYVVRYGINDWGPLYLSEVK----------GFSLVKANW 292 (448)
T ss_pred -----hhccCCCccHHHHHHHHHHcC---hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc----------CCCHHHHHH
Confidence 000000001 11122334444 66788888888899999999999999997655 789999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhh--chhHHHHH-HHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHhhhHhHhhhhc
Q 014820 334 DEFITSLAEIPGLLLAAILVDTA--GRKLSITI-MFTLSCLFLLPLVTYQ--SNILTTGLLFGARMCVMGAFTVSLIYAA 408 (418)
Q Consensus 334 ~~~~~~~~~~~g~~~~g~l~d~~--grr~~l~~-~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (418)
....+-+++++|++++||++||+ |||....+ +++...++++.+...+ +.+...+++++.|+...+..-+.-..+.
T Consensus 293 a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~ 372 (448)
T COG2271 293 AISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAA 372 (448)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 99999999999999999999995 66655544 4444555555555543 3477778888888888888888888999
Q ss_pred ccccccccc
Q 014820 409 EVKLMTLFT 417 (418)
Q Consensus 409 e~~p~~~R~ 417 (418)
|+.|++.-|
T Consensus 373 e~~pK~AaG 381 (448)
T COG2271 373 EFVPKKAAG 381 (448)
T ss_pred ccccHhhcc
Confidence 999987543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=269.13 Aligned_cols=356 Identities=17% Similarity=0.175 Sum_probs=253.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHH
Q 014820 21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVT 100 (418)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 100 (418)
|.+|+.+..+++.++..+.++..++...|.+.+|+|++.++.|++.+++.+++.+++++.|+++||+|||+++..+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 45788888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc------
Q 014820 101 AGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP------ 173 (418)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------ 173 (418)
+++.++.++++|++.+++.|++.|++.+.. +....++.|++|+++|++++++++.+.++|..+++++++++.+
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA 163 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999988 7777889999999999999999999999999999999988763
Q ss_pred CcchHHHHHHhHHHHHHH-HHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccch
Q 014820 174 RLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELV 252 (418)
Q Consensus 174 ~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (418)
..|||+.|++.+++.++. .+.++++||+|+.. +.-.++.++...+..+.+..+.+ + ++
T Consensus 164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~~~-------------~---~~--- 222 (412)
T TIGR02332 164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLTLE-------------Q---PE--- 222 (412)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhcccccc-------------c---cc---
Confidence 469999999988887765 44556678887521 00011111111111000000000 0 00
Q ss_pred hhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHH
Q 014820 253 HLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLY 332 (418)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (418)
++.+++.......+++++++ ..+.....+++....+++...|.|.++++.+ .+.+....+
T Consensus 223 -------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~---------~~~s~~~~~ 282 (412)
T TIGR02332 223 -------GAFAHAAMPQRSMLREIFTP----AIMLYTLAYFCLTNTLSAINIWTPQILQSFN---------QGSSNIMIG 282 (412)
T ss_pred -------cccccccccHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCCcHHHhH
Confidence 00000001112234444433 3455566666777788888899999985421 235666777
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhchhHH-HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccc
Q 014820 333 IDEFITSLAEIPGLLLAAILVDTAGRKLS-ITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVK 411 (418)
Q Consensus 333 ~~~~~~~~~~~~g~~~~g~l~d~~grr~~-l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 411 (418)
.......++.+++.++.|+++||++||+. ........++++++.....+.........+.+++.....+..+....|.+
T Consensus 283 ~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 362 (412)
T TIGR02332 283 LLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSI 362 (412)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhccccc
Confidence 77888889999999999999999987764 33444444444332222222222222222222333333345566677889
Q ss_pred cccccc
Q 014820 412 LMTLFT 417 (418)
Q Consensus 412 p~~~R~ 417 (418)
|++.|+
T Consensus 363 ~~~~~~ 368 (412)
T TIGR02332 363 SLQARA 368 (412)
T ss_pred chHHHH
Confidence 998886
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=271.49 Aligned_cols=337 Identities=14% Similarity=0.119 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcch-hHH-----HHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHH
Q 014820 24 CFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTE-ESL-----ITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEA 97 (418)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~-----~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~ 97 (418)
++.+....++++..+++...++...|.+.++++.+.++ .++ +.++..+++.++++++|+++||+|||+++.++.
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 45667778899999999999999999999998654432 222 247788999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHHH--------HHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 014820 98 LVTAGAGLLSSFSPNYIT--------LITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGA 168 (418)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 168 (418)
++++++.+++++++|++. ++++|+++|++.|.. +...++++|++|+++||++.++...+..+|..+++.+.
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999874 789999999999998 88888999999999999999999988888888887665
Q ss_pred HHhh--------cCcchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCC
Q 014820 169 WIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 240 (418)
Q Consensus 169 ~~l~--------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (418)
..+. .++|||+.|++.+++.++..++...+||+|++...+++.++. +.+.
T Consensus 175 ~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~----------~~~~------------ 232 (490)
T PRK10642 175 VLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQG----------DREG------------ 232 (490)
T ss_pred HHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhh----------cccc------------
Confidence 5442 268999999987766665555556788988754221110000 0000
Q ss_pred CCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 014820 241 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPL 320 (418)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (418)
. . +++..++++++++ .++.........+.....+|+...|.|.+..+.
T Consensus 233 -~---~--------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~------- 280 (490)
T PRK10642 233 -L---Q--------------------DGPKVSFKEIATK-HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHN------- 280 (490)
T ss_pred -c---c--------------------ccccCCHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 0 0 0001134555554 223344444444556677888888999887432
Q ss_pred ccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH-HHh--hchhHHHHHHHHHHHHHHH
Q 014820 321 MFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP-LVT--YQSNILTTGLLFGARMCVM 397 (418)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~-l~~--~~~~~~~~~~~~~~~~~~~ 397 (418)
.+.+............++.+++.++.|+++||+|||+.+..+.++..+..+. +.. ..+........++.+++.+
T Consensus 281 ---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 357 (490)
T PRK10642 281 ---LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILN 357 (490)
T ss_pred ---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 2455555566666677888899999999999999999887776544332222 221 2223333344455555555
Q ss_pred hhhHhHhhhhcccccccccc
Q 014820 398 GAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 398 ~~~~~~~~~~~e~~p~~~R~ 417 (418)
...+....+..|.+|++.|+
T Consensus 358 ~~~g~~~~~~~~~~p~~~Rg 377 (490)
T PRK10642 358 CFTGVMASTLPAMFPTHIRY 377 (490)
T ss_pred HHHHHHHHHHHHHCCCccch
Confidence 56667778888999999997
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=263.28 Aligned_cols=332 Identities=18% Similarity=0.226 Sum_probs=262.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHH
Q 014820 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV 99 (418)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 99 (418)
.+++|..+.++++..+..+++....+...|.+.+++|+++++.+++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL 89 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 46888888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchH
Q 014820 100 TAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 178 (418)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~ 178 (418)
.+++.+++.++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..+++.++..+.+..+||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 169 (406)
T PRK11551 90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWR 169 (406)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 9999999999999999999999999999887 777889999999999999999999999999999999998888889999
Q ss_pred HHHHHhHHHHHHHH-HHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhccc
Q 014820 179 WLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSS 257 (418)
Q Consensus 179 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (418)
..|++.+++.++.. +...++||+|++...+++.++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------------------------------------- 206 (406)
T PRK11551 170 HIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR------------------------------------------- 206 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh-------------------------------------------
Confidence 99988776655553 3445578776432111000000
Q ss_pred CCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHH
Q 014820 258 NGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFI 337 (418)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (418)
....+..+++...+.........+.....++....+.|.+..+. +.+..+.+.....
T Consensus 207 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----------g~s~~~~~~~~~~ 263 (406)
T PRK11551 207 ------------APVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQ-----------GLSRSQAGLVQIA 263 (406)
T ss_pred ------------hhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCChhhhhHHHHH
Confidence 00111122211112222333334444455666667788777543 4777777888888
Q ss_pred HHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 338 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 338 ~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
..++.+++.++.|++.||++||+.+..+....+++.+.+....+.+...+..++.+++..+..+..+++..|.+|++.|+
T Consensus 264 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g 343 (406)
T PRK11551 264 FNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRG 343 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhh
Confidence 88999999999999999999999988877777777666665555555555666677777777788899999999999887
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=259.72 Aligned_cols=362 Identities=23% Similarity=0.305 Sum_probs=266.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHH
Q 014820 18 GFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEA 97 (418)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~ 97 (418)
..++++|+.+..+.+..+..+.+....++..|.+.+++|.+..+.+++.+...++..+++++.|+++||+|||+.+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 89 (398)
T TIGR00895 10 PLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSI 89 (398)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence 34566777777777778888888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 014820 98 LVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD 176 (418)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 176 (418)
++.+++.++..++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++...+..+|..+++.+++.+.+..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 169 (398)
T TIGR00895 90 LLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG 169 (398)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999887 7788899999999999999999999999999999999999999899
Q ss_pred hHHHHHHhHHHHHHH-HHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhc
Q 014820 177 WRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLL 255 (418)
Q Consensus 177 w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (418)
|+..+++.++..++. .+...++||++++...+ +.++..+..++.......+.+ .+.++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~----------- 228 (398)
T TIGR00895 170 WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ---------SALPE----------- 228 (398)
T ss_pred ceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccccc---------ccccc-----------
Confidence 999998886555544 44556678877654333 223322222222111110000 00000
Q ss_pred ccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHH
Q 014820 256 SSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE 335 (418)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (418)
.+.+++..+...+.+++++..+..+......+.....++....+.|.+..+. +.+..+.+...
T Consensus 229 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~~~~~~~~~~ 291 (398)
T TIGR00895 229 ------QKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVEL-----------GFSLSLAATGG 291 (398)
T ss_pred ------cccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHH
Confidence 0000011122334455555445555555555566666677777777555332 46777777888
Q ss_pred HHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccc
Q 014820 336 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTL 415 (418)
Q Consensus 336 ~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 415 (418)
....++.+++.++.++++||++||+...........+.++.....+.+......++.+++.+...+..+++..|.+|++.
T Consensus 292 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 371 (398)
T TIGR00895 292 ALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI 371 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 88889999999999999999999854443333333333333324445556667778888888888999999999999998
Q ss_pred cc
Q 014820 416 FT 417 (418)
Q Consensus 416 R~ 417 (418)
|+
T Consensus 372 ~g 373 (398)
T TIGR00895 372 RA 373 (398)
T ss_pred HH
Confidence 86
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=261.93 Aligned_cols=327 Identities=16% Similarity=0.185 Sum_probs=229.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC---CCcchhHHH---HHHHHHHHHHHHhHHHHhhhhhcchHHHH
Q 014820 21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWN---LSSTEESLI---TTSVFAGLVVGAYAWGLVADNYGRRMGFL 94 (418)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~---~s~~~~~~~i~~~~~g~l~dr~Grr~~~~ 94 (418)
+++++.+...+++++..+++...++...|.+.++++ .+..+.+.. .+..+++..++++++|+++||+|||+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~ 97 (432)
T PRK10406 18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML 97 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 455566777778899999999999999999999985 455544444 44445555599999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHH
Q 014820 95 GEALVTAGAGLLSSFSPNYI--------TLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEA 165 (418)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 165 (418)
.+.++++++.+++++++++. .++++|+++|++.|.. +...++++|++|+++||++.++.+.+...|..+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~ 177 (432)
T PRK10406 98 ISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL 177 (432)
T ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988764 5889999999999988 88889999999999999999999888888888887
Q ss_pred HHHHHhh--------cCcchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCccccc
Q 014820 166 IGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 237 (418)
Q Consensus 166 ~~~~~l~--------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (418)
.+...+. ..+|||.+|++.+++.++.......+||+|++. + ++ .
T Consensus 178 ~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~-------~-~~-------~------------- 229 (432)
T PRK10406 178 LVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQE-------T-RA-------L------------- 229 (432)
T ss_pred HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHH-------H-hh-------h-------------
Confidence 7655543 257999999988777766554444456654310 0 00 0
Q ss_pred CCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccccc
Q 014820 238 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWL-LLFGNSFAYYAVVLLISELSSLDTRC 316 (418)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (418)
++..+++++++++ +.+.... ..+.....+|....|.|.+..+.
T Consensus 230 ------------------------------~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~--- 273 (432)
T PRK10406 230 ------------------------------KEAGSLKGLWRNR---RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT--- 273 (432)
T ss_pred ------------------------------cccccHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 0001344555532 2222222 23334566778888899887432
Q ss_pred cCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH--h--hchhHHHHHHHHHH
Q 014820 317 RSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV--T--YQSNILTTGLLFGA 392 (418)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~--~--~~~~~~~~~~~~~~ 392 (418)
.+.+..+......+..+...++.++.|+++||++||+.+..+..+.++....+. . ..+......+..+.
T Consensus 274 -------~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (432)
T PRK10406 274 -------AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCA 346 (432)
T ss_pred -------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 246666666666666777788888999999999999887776554433332221 1 11222222222223
Q ss_pred HHHHHhhhHhHhhhhccccccccccC
Q 014820 393 RMCVMGAFTVSLIYAAEVKLMTLFTV 418 (418)
Q Consensus 393 ~~~~~~~~~~~~~~~~e~~p~~~R~~ 418 (418)
.+..+...+..+.+.+|.+|++.|+.
T Consensus 347 ~~~~~~~~~~~~~~~~e~fp~~~r~t 372 (432)
T PRK10406 347 LLIVSFYTSISGILKAEMFPAQVRAL 372 (432)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCccch
Confidence 23333444567788999999999973
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=250.25 Aligned_cols=321 Identities=20% Similarity=0.197 Sum_probs=255.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHH
Q 014820 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV 99 (418)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 99 (418)
++..+..++.+.++.|..+..++....++|++.+|+|.|..+.|+..+.|.+++.+++++...+.||+.||++++..+.+
T Consensus 8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~l 87 (394)
T COG2814 8 RKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL 87 (394)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 34556677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchH
Q 014820 100 TAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 178 (418)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~ 178 (418)
+.++.+++++++||+.++++|++.|+..|.+ .+..+...+..|+++|++++++...+..++.++|.+++.++.+.+|||
T Consensus 88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR 167 (394)
T COG2814 88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWR 167 (394)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHH
Confidence 9999999999999999999999999999999 788889999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHH-HHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhccc
Q 014820 179 WLLGLSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSS 257 (418)
Q Consensus 179 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (418)
.+|+..+.++++.++ .+..+| |+.. +++.
T Consensus 168 ~~F~~ia~l~ll~~~~~~~~lP--~~~~--~~~~---------------------------------------------- 197 (394)
T COG2814 168 ATFLAIAVLALLALLLLWKLLP--PSEI--SGSL---------------------------------------------- 197 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC--CccC--CCCC----------------------------------------------
Confidence 999999999888754 456677 2100 0000
Q ss_pred CCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHH
Q 014820 258 NGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFI 337 (418)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (418)
+.+..+..++++++ ..+......+......|....|...++.+.. +.+.....+....
T Consensus 198 ---------~~~~~~~~~~l~~p---~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~----------g~s~~~vs~~Ll~ 255 (394)
T COG2814 198 ---------PGPLRTLLRLLRRP---GVLLGLLATFLFMTGHFALYTYIRPFLESVA----------GFSVSAVSLVLLA 255 (394)
T ss_pred ---------CcchhHHHHHhcCc---hHHHHHHHHHHHHcchhhhHHhHHHHHHHcc----------CCCHhHHHHHHHH
Confidence 00111223344443 3333344444444445555555565664443 6888999999999
Q ss_pred HHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccc
Q 014820 338 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLM 413 (418)
Q Consensus 338 ~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 413 (418)
++++.++|+.++|++.|| +.|+.+.....+.++.++.+.+ ..+.+...+..++.++.............++..|+
T Consensus 256 ~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~ 331 (394)
T COG2814 256 FGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPD 331 (394)
T ss_pred HHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCC
Confidence 999999999999999999 8888888888888888777776 34444555555556666665555566666664444
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=260.66 Aligned_cols=354 Identities=19% Similarity=0.235 Sum_probs=252.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHH
Q 014820 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL 98 (418)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 98 (418)
+++++|+.+..++++++..+++....++..|.+.+++|++..+.+++.+.+.++..+++++.|+++||+|||++++.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 85 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV 85 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45678888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc-
Q 014820 99 VTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD- 176 (418)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~- 176 (418)
+.+++.+++.++++++.+++.|++.|++.+.. +...+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 165 (405)
T TIGR00891 86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD 165 (405)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999888 7778899999999999999999999999999999999998887665
Q ss_pred -hHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhc
Q 014820 177 -WRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLL 255 (418)
Q Consensus 177 -w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (418)
||+.|.+.++..++..+....+||++++...+++.++..+..++..+.++ .
T Consensus 166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------------------- 217 (405)
T TIGR00891 166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEH--R-------------------------- 217 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccch--h--------------------------
Confidence 99999887666655555556678776532211111111111111000000 0
Q ss_pred ccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHH
Q 014820 256 SSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE 335 (418)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (418)
.+...++.....+...+ ..++.....................+.|.+..+. .+.+..+.+...
T Consensus 218 ------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~s~~~~~~~~ 280 (405)
T TIGR00891 218 ------IANIVMTLAAAMVQSAG-KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD----------LGLSPHTVANIV 280 (405)
T ss_pred ------hhhhhhhhhHHhhhhhh-hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH----------hCCCHHHHHHHH
Confidence 00000000001111111 1111122222222223333344445566655322 257777888888
Q ss_pred HHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH-HHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhccccccc
Q 014820 336 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP-LVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMT 414 (418)
Q Consensus 336 ~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 414 (418)
....++.+++.++.+++.||++||+.+..+..+.++..+. +....+.+...+..++.+++..+..+....+..|.+|++
T Consensus 281 ~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (405)
T TIGR00891 281 VFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTD 360 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcc
Confidence 8889999999999999999999999888777665433332 222333333344445555666666778888999999999
Q ss_pred ccc
Q 014820 415 LFT 417 (418)
Q Consensus 415 ~R~ 417 (418)
.|+
T Consensus 361 ~~~ 363 (405)
T TIGR00891 361 QRA 363 (405)
T ss_pred hhH
Confidence 886
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=274.37 Aligned_cols=329 Identities=33% Similarity=0.594 Sum_probs=259.2
Q ss_pred hhhhhhhhhcCCC---cchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 014820 46 FVGPTVKSEWNLS---STEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL 122 (418)
Q Consensus 46 ~~~~~~~~~~~~s---~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 122 (418)
...|.+.+|+|++ ..+.+++.+++.+++.+++++.|+++||+|||++++++.++.+++.++.++++|++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4568899999999 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHhhccCc
Q 014820 123 VGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPES 201 (418)
Q Consensus 123 ~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 201 (418)
.|++.+.. +....++.|++|+++|+++.++...+..+|.++++.++..+. +||+.+++.+++.++..+..+++||+
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---~wr~~~~~~~i~~~~~~~~~~~~~es 266 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---DWRWLQLAVSLPTFLFFLLSWFVPES 266 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999987 888889999999999999999999999999999999887764 39999999988888776667889999
Q ss_pred hhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchh-
Q 014820 202 PRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSK- 280 (418)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 280 (418)
|+++..+++.+++.+..++..+.++.+.+.+.... ..+ + +. ++++++.+++++++++
T Consensus 267 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~-----------------~~~---~-~~-~~~~~~~~~~~l~~~~~ 324 (505)
T TIGR00898 267 PRWLISQGRIEEALKILQRIAKINGKKLPAEVLSL-----------------SLE---K-DL-SSSKKQYSFLDLFRTPN 324 (505)
T ss_pred hHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhh-----------------hhh---h-hh-hhccCCCcHHHHhCChH
Confidence 99999999988888887777665543211100000 000 0 00 0001123567777644
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhH
Q 014820 281 LARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL 360 (418)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~ 360 (418)
.++..+.....++.....+|+...+.+.+. . +......+.++..+++.++.+++.||+|||+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~---~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~ 386 (505)
T TIGR00898 325 LRKTTLCLMMLWFTTAFSYYGLVLDLGNLG---------------G---NIYLDLFISGLVELPAKLITLLLIDRLGRRY 386 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccC---------------C---ChHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 445555556666777777777776666432 2 2345556677888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhchh--HHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 361 SITIMFTLSCLFLLPLVTYQSN--ILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 361 ~l~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
.+.++.++.+++.+++.+..+. +......++.+++.+..++..+.+.+|.+|++.|+
T Consensus 387 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 445 (505)
T TIGR00898 387 TMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRN 445 (505)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHh
Confidence 9999998888887777664332 44445556666777778889999999999999987
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=255.74 Aligned_cols=308 Identities=14% Similarity=0.051 Sum_probs=222.5
Q ss_pred HHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014820 38 AMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLI 117 (418)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 117 (418)
......+++..|.+.+|+|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+......+.......++++.++
T Consensus 4 ~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (368)
T TIGR00903 4 QAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLL 83 (368)
T ss_pred hHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 44556788899999999999999999999999999999999999999999999887665555544433333337999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHH-HHHHh
Q 014820 118 TLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL-LAFLG 196 (418)
Q Consensus 118 ~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~-~~~~~ 196 (418)
+.|++.|++.+........++|++|+++|++++++.+.+..+|.+++++++.++.+++|||+.|++.++++++. ++.++
T Consensus 84 ~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 84 ACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998766666667999999999999999999999999999999999999999999999988877665 44556
Q ss_pred hccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHh
Q 014820 197 FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLML 276 (418)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 276 (418)
++||+|++. ++..+. ++...+++++
T Consensus 164 ~lp~~p~~~---~~~~~~----------------------------------------------------~~~~~~~~~l 188 (368)
T TIGR00903 164 ALPALPFQA---AEGFGF----------------------------------------------------KDAVKEFGAL 188 (368)
T ss_pred HcCCCCCCC---CCCcch----------------------------------------------------HHHHHHHHHH
Confidence 678876421 000000 0001145566
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 014820 277 FSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA 356 (418)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~ 356 (418)
+++ +.++.....+++....+|+...|.|.++++. +.+.. .+....+.. +.+.+..++++||.
T Consensus 189 l~~---~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~-----------g~s~~-~~~~~~l~~---~~g~~g~~~~~d~~ 250 (368)
T TIGR00903 189 AGR---KDLWIIGAILGFGVALFDNLAIWLEAALRPA-----------GLEDI-AGDAVALAI---LAGLIGVAVIPDRV 250 (368)
T ss_pred HcC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------CCChH-HHHHHHHHH---HHHHHHHHHhhHHh
Confidence 665 4456666777778888889999999999543 24433 333333333 34444457888887
Q ss_pred chh---HHHH-HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhccccccccccC
Q 014820 357 GRK---LSIT-IMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFTV 418 (418)
Q Consensus 357 grr---~~l~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~ 418 (418)
.|| +... ....+.++....+....+......+..+.+++.....+..+++.+|.+|++.|+.
T Consensus 251 ~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt 316 (368)
T TIGR00903 251 ARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGK 316 (368)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCc
Confidence 543 3322 2344444444444444344344445555666667777888899999999999974
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=268.93 Aligned_cols=361 Identities=15% Similarity=0.069 Sum_probs=253.7
Q ss_pred CCcHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhh
Q 014820 7 VYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN 86 (418)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr 86 (418)
..+.++.+.+..+.+..+.++.+++++++..+.++..++...|.+.+++|++.++.|++.+.+.+++.+++++.|+++||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr 90 (467)
T PRK09556 11 TLDLPLEVQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG 90 (467)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc
Confidence 33444444444566778888889999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHH
Q 014820 87 YGRRMGFLGEALVTAGAGLLSSF-----SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIG 160 (418)
Q Consensus 87 ~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 160 (418)
+|||+++..+.+++++..+..+. +++++.+++.|++.|++.+.. +...+++.|++|+++||+++|+++.+.++|
T Consensus 91 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG 170 (467)
T PRK09556 91 KNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLG 170 (467)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchh
Confidence 99999998888888777766554 589999999999999999987 778889999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCc---chHHHHHHhHHHHHHHHH-HHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccc
Q 014820 161 SVSEAIGAWIIMPRL---DWRWLLGLSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVA 236 (418)
Q Consensus 161 ~~~~~~~~~~l~~~~---~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (418)
.++++++..++.+.. +||..|.+.+++.++..+ .+++.+++|+.. +..++ ++.. ++.
T Consensus 171 ~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~~-~~~~------~~~--------- 231 (467)
T PRK09556 171 GAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGKA-EEIF------GEP--------- 231 (467)
T ss_pred hhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCCh-hhcc------cCc---------
Confidence 999998887665542 699988887877766544 344456665421 00000 0000 000
Q ss_pred cCCCCCCCCCCCccchhhcccCCCCCcccccchhhHH-HHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 014820 237 RRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLF-LMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTR 315 (418)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (418)
..+.+ ++.+.++......+ +..+++ +.++...+..++....+++...|.|.|..+.
T Consensus 232 -----~~~~~-------------~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~-- 288 (467)
T PRK09556 232 -----ISEED-------------KETESTDMTKWQIFVEYVLKN---PVIWLLCFANIFLYIVRIGIDNWSPVYAFQE-- 288 (467)
T ss_pred -----cchhh-------------hccccccCcHHHHHHHHHHcC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 00000 00000000001111 223443 3455556666666677778888999887543
Q ss_pred ccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH--hhchhHHHHHHHHHHH
Q 014820 316 CRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV--TYQSNILTTGLLFGAR 393 (418)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~ 393 (418)
.|.+..+.........++.+++.+++|+++||++||+.+........++...+. ...+.+...+..++.|
T Consensus 289 --------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 360 (467)
T PRK09556 289 --------LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALG 360 (467)
T ss_pred --------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 357778888888888899999999999999999998876655444333322222 2233333334445555
Q ss_pred HHHHhhhHhHhhhhcccccccccc
Q 014820 394 MCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 394 ~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
++..+........+.|.+|++.||
T Consensus 361 ~~~~~~~~~~~~~~~~~~p~~~~g 384 (467)
T PRK09556 361 FLVFGPQLLIGVAAVGFVPKKAIG 384 (467)
T ss_pred HHHhhHHHHHHHHHHhhcchhhHH
Confidence 444333333446777999999876
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=259.43 Aligned_cols=341 Identities=17% Similarity=0.197 Sum_probs=248.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHH
Q 014820 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV 99 (418)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 99 (418)
++++++.+..+.++++..+++.....+..|.+.+++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~ 92 (426)
T PRK12307 13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA 92 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 45677778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchH
Q 014820 100 TAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 178 (418)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~ 178 (418)
.+++.++.+++++++.++++|++.|++.|.. +....++.|++|+++|+++.++...+..+|.++++.+.+.+.+..+||
T Consensus 93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~ 172 (426)
T PRK12307 93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWR 172 (426)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHH
Confidence 9999999999999999999999999999887 777889999999999999999999999999999999999988889999
Q ss_pred HHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccC
Q 014820 179 WLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSN 258 (418)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (418)
+.|++..+..++........||++++...+ ... ++++
T Consensus 173 ~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~------------~~~-~~~~------------------------------ 209 (426)
T PRK12307 173 AAFFVGLLPVLLVIYIRARAPESKEWEEAK------------LSG-KGKH------------------------------ 209 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCChHHHHhh------------hhc-cccc------------------------------
Confidence 999875443333222222234443211000 000 0000
Q ss_pred CCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHH
Q 014820 259 GGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFIT 338 (418)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (418)
.+...+....+++++++++..+.........+......+....+.|.+..+. +.++..........
T Consensus 210 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~~~~~~~~~~~~~ 275 (426)
T PRK12307 210 ---SQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGE-----------GFDTGVVSNLMTAA 275 (426)
T ss_pred ---cccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHH
Confidence 0000001122456667665544444333333333344445566777776433 46666777777788
Q ss_pred HhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH--HHHhhhHhHhhhhccccccccc
Q 014820 339 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARM--CVMGAFTVSLIYAAEVKLMTLF 416 (418)
Q Consensus 339 ~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~~p~~~R 416 (418)
+++.+++.++.|++.||++||+.+..+.++.++..+.+....+........++.+. ...+..+..+.++.|.+|++.|
T Consensus 276 ~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 355 (426)
T PRK12307 276 AFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVR 355 (426)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHH
Confidence 89999999999999999999999888877776665544432222112222222222 2223345666788999999988
Q ss_pred c
Q 014820 417 T 417 (418)
Q Consensus 417 ~ 417 (418)
+
T Consensus 356 g 356 (426)
T PRK12307 356 G 356 (426)
T ss_pred h
Confidence 6
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=267.36 Aligned_cols=359 Identities=19% Similarity=0.211 Sum_probs=249.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc--------CCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchH
Q 014820 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEW--------NLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRM 91 (418)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 91 (418)
.++..+...++.++.+..+++...+++..|.+.+++ +.+..+.+++.+++.++..++++++|+++||+|||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~ 86 (479)
T PRK10077 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (479)
T ss_pred chHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 456677777888888999999999999888888877 888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 014820 92 GFLGEALVTAGAGLLSSFS------------PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWT 158 (418)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 158 (418)
+++++.++.+++.+..+++ ++++.+++.|++.|++.|.. +...++++|++|+++||+++++.+.+..
T Consensus 87 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~ 166 (479)
T PRK10077 87 SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII 166 (479)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHH
Confidence 9999999998888777652 23567889999999999998 8888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhh--------cCcchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCC
Q 014820 159 IGSVSEAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLP 230 (418)
Q Consensus 159 ~g~~~~~~~~~~l~--------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (418)
+|..+++.++..+. +.++||+.|++.+++.++..+..+++||+|+++..+++.+++++..++..+.++.+
T Consensus 167 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~-- 244 (479)
T PRK10077 167 FGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLAT-- 244 (479)
T ss_pred HHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHH--
Confidence 99999887766543 35799999998888777776667788999988766666665544443321110000
Q ss_pred CCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014820 231 NGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELS 310 (418)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (418)
.. . ++..+... ++....+..+...............+.....++....+.|.+.
T Consensus 245 --~~-------~------~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~ 298 (479)
T PRK10077 245 --QA-------L------QEIKHSLD-----------HGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIF 298 (479)
T ss_pred --HH-------H------HHHHHHHH-----------HhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 00 0 00000000 0000000111100000011111112222233344455666665
Q ss_pred hccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh--ch-h-HHHH
Q 014820 311 SLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--QS-N-ILTT 386 (418)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~--~~-~-~~~~ 386 (418)
.+. +.+...........++..+++.+++++++||+|||+.++.+..+++++.+.+... .+ . ....
T Consensus 299 ~~~-----------g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~ 367 (479)
T PRK10077 299 KTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL 367 (479)
T ss_pred HHc-----------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 432 3555555666667788899999999999999999999999999888887766542 11 1 1222
Q ss_pred HHHHHHHHHHHh-hhHhHhhhhcccccccccc
Q 014820 387 GLLFGARMCVMG-AFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 387 ~~~~~~~~~~~~-~~~~~~~~~~e~~p~~~R~ 417 (418)
...++.+++.+. ..+..+.+++|.+|++.|+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 399 (479)
T PRK10077 368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG 399 (479)
T ss_pred HHHHHHHHHHhccccchhHHHhHhhCChhHHH
Confidence 233333333332 3367889999999999886
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=252.52 Aligned_cols=363 Identities=22% Similarity=0.314 Sum_probs=259.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hhhhhcCC--Ccch----hHHHHHHHHHHHHHHHhHHHHhhhhh
Q 014820 22 YQCFVLAYAGLGWVAEAMEIMILSFVGP--------TVKSEWNL--SSTE----ESLITTSVFAGLVVGAYAWGLVADNY 87 (418)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~--s~~~----~~~~~s~~~~~~~i~~~~~g~l~dr~ 87 (418)
+-........++.+-.++....++...+ .+.+.+|. ++++ .+.+.+.+.+|.++|++..|+++||+
T Consensus 8 ~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~ 87 (485)
T KOG0569|consen 8 RLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF 87 (485)
T ss_pred HHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444555556665555554332 23345663 3333 37789999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHH
Q 014820 88 GRRMGFLGEALVTAGAGLLSSF---SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 163 (418)
Q Consensus 88 Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 163 (418)
|||..+.++.++..++.++..+ .+++.+++++|++.|+..|.. .....|+.|..|++.||....+.+.+..+|..+
T Consensus 88 GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll 167 (485)
T KOG0569|consen 88 GRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILL 167 (485)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHH
Confidence 9999999998888888776655 478899999999999999998 677779999999999999999999999999999
Q ss_pred HHHHHH--HhhcCcchHHHHHHhHHHHHHHHHHHhhccCchhHHHh-hcChHHHHHHHHHHHHhcCCCCCCCcccccCCC
Q 014820 164 EAIGAW--IIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCL-KGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 240 (418)
Q Consensus 164 ~~~~~~--~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (418)
+..++. .+.+...|++.+.+..+++++..+...++||+|+|+.. +++.+++++.++.++..++++...++...+
T Consensus 168 ~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e--- 244 (485)
T KOG0569|consen 168 GQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLRE--- 244 (485)
T ss_pred HHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHH---
Confidence 977653 34456679999999999999999999999999999987 789999999999887654422111000000
Q ss_pred CCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchh-hHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccccccC
Q 014820 241 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSK-LARTTILLWLLLFGNSF-AYYAVVLLISELSSLDTRCRS 318 (418)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 318 (418)
.+.++.++++..+++++++++ .++...+.+...+...+ ..+....+...++.+
T Consensus 245 -------------------~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~------ 299 (485)
T KOG0569|consen 245 -------------------IEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT------ 299 (485)
T ss_pred -------------------HHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH------
Confidence 000111112445788888754 44554444444443222 223333333333322
Q ss_pred CCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh----hch--hHH---HHHHH
Q 014820 319 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----YQS--NIL---TTGLL 389 (418)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~----~~~--~~~---~~~~~ 389 (418)
.|.+..++.......++..++.++++.+++||.|||++++.+..++.++.+++.. ... .|. .+...
T Consensus 300 -----aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~ 374 (485)
T KOG0569|consen 300 -----AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAI 374 (485)
T ss_pred -----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2588888889999999999999999999999999999999999999888877764 111 111 12233
Q ss_pred HHHHHH-HHhhhHhHhhhhcccccccccc
Q 014820 390 FGARMC-VMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 390 ~~~~~~-~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
+++.+. ..+..|+.+.+.+|++|++.|+
T Consensus 375 ~~~~~~f~~G~gpi~~fi~aELf~~~~R~ 403 (485)
T KOG0569|consen 375 FLFIISFAIGPGPIPWFIGAELFPQSARS 403 (485)
T ss_pred HHHHHhhhcCCCchhHHHHHHhCCccchH
Confidence 333332 3445699999999999999986
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=252.43 Aligned_cols=332 Identities=15% Similarity=0.097 Sum_probs=231.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhc--CCCcchhHHHH-----HHHHHHHHHHHhHHHHhhhhhcchHH
Q 014820 21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPT-VKSEW--NLSSTEESLIT-----TSVFAGLVVGAYAWGLVADNYGRRMG 92 (418)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~~~~~-----s~~~~~~~i~~~~~g~l~dr~Grr~~ 92 (418)
.++++......++++..+++...++...|. +.+++ +.++. .+++. ++.+++..+++++.|+++||+|||++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~ 96 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence 345667778888999999999999988775 45555 66665 45553 34556678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHH
Q 014820 93 FLGEALVTAGAGLLSSFSPNYI--------TLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 163 (418)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 163 (418)
++.+.++++++.++++++++++ .++++|+++|++.|.. +....++.|++|+++|++..+..+.+..+|..+
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l 176 (438)
T PRK09952 97 LMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL 176 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 5888999999999988 777889999999999999999999999999998
Q ss_pred HHHHHHHhh--------cCcchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCccc
Q 014820 164 EAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLV 235 (418)
Q Consensus 164 ~~~~~~~l~--------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (418)
+..+...+. .++|||.+|++.+++.++........||+|++...+++.++ .
T Consensus 177 ~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~------------~--------- 235 (438)
T PRK09952 177 STGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA------------A--------- 235 (438)
T ss_pred HHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc------------c---------
Confidence 877766554 25799999998877665544444456676643211100000 0
Q ss_pred ccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 014820 236 ARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTR 315 (418)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (418)
+++....+.+++++ +.........++....+|....|.|.+..+.
T Consensus 236 -------------------------------~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-- 280 (438)
T PRK09952 236 -------------------------------KKRIPVIEALLRHP--GAFLKIIALRLCELLTMYIVTAFALNYSTQN-- 280 (438)
T ss_pred -------------------------------cccCCHHHHHHHch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 00000111233322 1222222334445566677777888776432
Q ss_pred ccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh---hch-hHHHHHHHHH
Q 014820 316 CRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT---YQS-NILTTGLLFG 391 (418)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~---~~~-~~~~~~~~~~ 391 (418)
.+.+.........+.++..+++.++.|+++||+|||+.+..+.++.+++.+.+.. ..+ .+......++
T Consensus 281 --------~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 352 (438)
T PRK09952 281 --------LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIML 352 (438)
T ss_pred --------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 2455444444455566777888999999999999999888776665554433322 112 2222333444
Q ss_pred HHHHHHhhhHhHhhhhcccccccccc
Q 014820 392 ARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 392 ~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
.+++.+...+..+++..|.+|++.|+
T Consensus 353 ~~~~~~~~~~~~~~~~~e~~p~~~r~ 378 (438)
T PRK09952 353 ANIAHDMVVCVQQPMFTEMFGASYRY 378 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcchhH
Confidence 55666666788899999999999985
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=254.93 Aligned_cols=370 Identities=15% Similarity=0.089 Sum_probs=260.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHH
Q 014820 23 QCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAG 102 (418)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~ 102 (418)
+|..+..++++.+....+....+...|.+.+++|.+.++.+|+.+.+.+++.+++++.|+++||+|||++++.+.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHH
Q 014820 103 AGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFV-PPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 180 (418)
Q Consensus 103 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~ 180 (418)
+.+++++++|++.++++|+++|++.+.. +.....+.+.+ |+++|+++++++.....+|..++|.+++++.++.+||+.
T Consensus 84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~ 163 (495)
T PRK14995 84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSV 163 (495)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH
Confidence 9999999999999999999999999887 66666676665 679999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHH-HHHhhccCchhHHHhhcChHHHHHHH------HHHHHhcC-CCCCCCcccccCCCCCCCCCCCccch
Q 014820 181 LGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRAL------EKIAQVNK-TKLPNGKLVARRSTLPTGERAPPELV 252 (418)
Q Consensus 181 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (418)
|++...+.++.. +..+++|++++.. +++.+...... .......+ .+........... .........
T Consensus 164 f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~ 237 (495)
T PRK14995 164 FLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLT----LLTGALLLG 237 (495)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHH----HHHHHHHHH
Confidence 998877666653 4455567654311 11111111000 00000000 0000000000000 000000000
Q ss_pred hhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHH
Q 014820 253 HLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLY 332 (418)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (418)
.... .+.+.+.+..+ .++++++. ........+.....+++...+.|.++... .+.++.+++
T Consensus 238 ~f~~-----~e~~~~~p~~~-~~lf~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lq~v----------~g~s~~~ag 298 (495)
T PRK14995 238 LFIR-----TQLAASRPMID-MRLFTHRI---ILSGVVMAMTAMITLVGFELLMAQELQFV----------HGLSPLEAG 298 (495)
T ss_pred HHHH-----HHhcCCCCCcC-HHHhCCcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCCHHHHH
Confidence 0000 00000111112 23444432 23333333444445556666667665433 268888999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh---hchhHHHHHHHHHHHHHHHhhhHhHhhhhcc
Q 014820 333 IDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT---YQSNILTTGLLFGARMCVMGAFTVSLIYAAE 409 (418)
Q Consensus 333 ~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 409 (418)
.......++..++.++.|++.||+|+|+.+..+..+.+++.+.+.. ..+.+......++.|++.+...+.....+.+
T Consensus 299 ~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~ 378 (495)
T PRK14995 299 MFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMA 378 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988888877777665543 2334445556777888888888888888889
Q ss_pred cccccccc
Q 014820 410 VKLMTLFT 417 (418)
Q Consensus 410 ~~p~~~R~ 417 (418)
..|++.|+
T Consensus 379 ~~~~~~~g 386 (495)
T PRK14995 379 AAPPEKAA 386 (495)
T ss_pred cCCHHhcc
Confidence 99998876
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=252.69 Aligned_cols=347 Identities=16% Similarity=0.125 Sum_probs=239.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHH
Q 014820 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV 99 (418)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 99 (418)
+++++..+....+.++..+.+...++...|.+.+++|+|.++.+++.+.+.+++.+++++.|+++||+|||+++.++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~ 97 (434)
T PRK11663 18 RYWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIA 97 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHH
Confidence 34566677777788888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchH
Q 014820 100 TAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 178 (418)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~ 178 (418)
.+++.++.+++++++.+++.|++.|++.|.. +....++.|++|+++|++++++++.+.++|..+++.+.+++.+.+|||
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~ 177 (434)
T PRK11663 98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR 177 (434)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 9999999999999999999999999999887 777889999999999999999999999999999999999999889999
Q ss_pred HHHHHhHHHHHHH-HHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhccc
Q 014820 179 WLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSS 257 (418)
Q Consensus 179 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (418)
+.|++.+++.++. ++..++++|+|++...+...++. + +..+ .+
T Consensus 178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-----------~----------------~~~~--~~------- 221 (434)
T PRK11663 178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWR-----------H----------------DALE--LA------- 221 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccc-----------c----------------cccc--cc-------
Confidence 9999888776655 34445567765421000000000 0 0000 00
Q ss_pred CCCCCcccccchhhHHH-HhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHH
Q 014820 258 NGGNKTTEGKSGLSLFL-MLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEF 336 (418)
Q Consensus 258 ~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (418)
+++++++.+....++ ..+++ +.++......+.....+++...|.|.+..+. .+.+..+......
T Consensus 222 --~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----------~g~s~~~a~~~~~ 286 (434)
T PRK11663 222 --QQQEGAGLSRKEILTKYVLLN---PYIWLLSFSYVLVYVVRAAINDWGNLYMSET----------LGVDLVTANSAVS 286 (434)
T ss_pred --hhccccCCChhhhHHHHHhcC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------cCCCHHHHHHHHH
Confidence 000000000000111 12222 2344444445555566667777888887433 2577778888888
Q ss_pred HHHhhhhHHHHHHHHHHhhh--chh-HHHHHHHHHHHHHHHHHH--hhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccc
Q 014820 337 ITSLAEIPGLLLAAILVDTA--GRK-LSITIMFTLSCLFLLPLV--TYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVK 411 (418)
Q Consensus 337 ~~~~~~~~g~~~~g~l~d~~--grr-~~l~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 411 (418)
...++++++++++|++.||+ ++| ...........+....+. ...+........+..+++..+..........|.+
T Consensus 287 ~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 366 (434)
T PRK11663 287 MFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECS 366 (434)
T ss_pred HHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 88899999999999999998 333 322221111111111111 1222222222233333333323334456778999
Q ss_pred cccccc
Q 014820 412 LMTLFT 417 (418)
Q Consensus 412 p~~~R~ 417 (418)
|++.|+
T Consensus 367 ~~~~~g 372 (434)
T PRK11663 367 HKEAAG 372 (434)
T ss_pred cHhhHH
Confidence 988876
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=247.54 Aligned_cols=319 Identities=14% Similarity=0.072 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHH
Q 014820 23 QCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAG 102 (418)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~ 102 (418)
+|..++.+.++.+..........+..|.+.+++|+|+++.|++.+.+.+++.+++++.|+++||+|||+++..+.++.++
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 86 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA 86 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 44444444444444444444556678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHH
Q 014820 103 AGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLL 181 (418)
Q Consensus 103 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~ 181 (418)
+++.+.+++|++.+++.|++.|++.+.. +...+++.|++|+++|++++++...+.++|..++|++++.+.++.|||+.|
T Consensus 87 ~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f 166 (390)
T PRK03545 87 SHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTF 166 (390)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHH
Confidence 9999999999999999999999999887 777889999999999999999999999999999999999998889999999
Q ss_pred HHhHHHHHHHHHH-HhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCC
Q 014820 182 GLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGG 260 (418)
Q Consensus 182 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (418)
++.+++.++..+. ...+||.|+ + +. +
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~----~-~~-~----------------------------------------------- 193 (390)
T PRK03545 167 LAIGGGALITLLLLIKLLPLLPS----E-HS-G----------------------------------------------- 193 (390)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCC----C-Cc-c-----------------------------------------------
Confidence 9988877665433 334454321 0 00 0
Q ss_pred CCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHh
Q 014820 261 NKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSL 340 (418)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (418)
...+.+++++++..+... ...+.....++....+.+.+..+. .+.+....+......++
T Consensus 194 --------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~----------~g~s~~~~~~~~~~~~~ 252 (390)
T PRK03545 194 --------SLKSLPLLFRRPALVSLY---LLTVVVVTAHFTAYSYIEPFVQQV----------AGLSENFATLLLLLFGG 252 (390)
T ss_pred --------hHHHHHHHHhCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh----------cCCCccHHHHHHHHHHH
Confidence 001233444443322222 222222333333344555554332 25677777888888889
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 341 AEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL-VTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 341 ~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
+++++.++.+++.||++||... .+..+..++...+ ....+.+...+..++.|++.....+.......|..|+ .|+
T Consensus 253 ~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~ 328 (390)
T PRK03545 253 AGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-ATD 328 (390)
T ss_pred HHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-cHH
Confidence 9999999999999999988654 4444444443333 3344445555566666776666666667777787774 443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-32 Score=259.06 Aligned_cols=364 Identities=21% Similarity=0.241 Sum_probs=246.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCC--------cchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHH
Q 014820 26 VLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLS--------STEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEA 97 (418)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~ 97 (418)
...++.++.+...++...++...+.+..+++.+ ..+.+++.+++.++..++++++|+++||+|||++++++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~ 108 (481)
T TIGR00879 29 LSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIA 108 (481)
T ss_pred HHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHH
Confidence 333444555666777778888888888887777 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh---hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHH---HH
Q 014820 98 LVTAGAGLLSSFS---PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGA---WI 170 (418)
Q Consensus 98 ~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~---~~ 170 (418)
++.+++.+++.+. .+++.+++.|++.|++.+.. +...+++.|++|+++|++++++++.+..+|..+++.++ ..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~ 188 (481)
T TIGR00879 109 LLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVS 188 (481)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999998888554 45668999999999999988 77788999999999999999999999999999999998 66
Q ss_pred hhcCcchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCcc
Q 014820 171 IMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPE 250 (418)
Q Consensus 171 l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (418)
..+..+||+.|++.++..++..+..+++||+|++...+++.++..+..++....++ +..... + ..+
T Consensus 189 ~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----------~-~~~ 254 (481)
T TIGR00879 189 LNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSG---EDKELL----------D-ELE 254 (481)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCC---CcHHHH----------H-HHH
Confidence 66778999999997766666666677889998776555555443333322211100 000000 0 000
Q ss_pred chhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChh
Q 014820 251 LVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDAN 330 (418)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (418)
..+...+ .+.+ ..+.........+++...+..+...+..+...........+.+.+..+. +.+...
T Consensus 255 ~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~~~~~ 320 (481)
T TIGR00879 255 LIDIKRS--IEKR-SVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENA-----------GVSTDH 320 (481)
T ss_pred HHHHHHH--HHHh-hccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHc-----------CCCchH
Confidence 0000000 0000 0011122223322221223333344444443333444455566555433 466667
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh-----hch-----hHHHHHHHHHHHHH-HHhh
Q 014820 331 LYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-----YQS-----NILTTGLLFGARMC-VMGA 399 (418)
Q Consensus 331 ~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~-----~~~-----~~~~~~~~~~~~~~-~~~~ 399 (418)
.........++.+++.+++++++||++||+.+..+..+.+++.+++.+ ..+ .........+...+ ..+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (481)
T TIGR00879 321 AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGW 400 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccc
Confidence 777888888899999999999999999999998888887777766652 111 22222222222222 2334
Q ss_pred hHhHhhhhcccccccccc
Q 014820 400 FTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 400 ~~~~~~~~~e~~p~~~R~ 417 (418)
.+....+..|.+|++.|+
T Consensus 401 ~~~~~~~~~~~~p~~~~~ 418 (481)
T TIGR00879 401 GPVPWVIVSEIFPLSLRP 418 (481)
T ss_pred cCeehhhhhccCChHHHH
Confidence 467778889999998886
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-30 Score=244.70 Aligned_cols=328 Identities=16% Similarity=0.195 Sum_probs=225.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHH-HHHHH-----HHHHHHHhHHHHhhhhhcchHHHHHH
Q 014820 23 QCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLI-TTSVF-----AGLVVGAYAWGLVADNYGRRMGFLGE 96 (418)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~s~~~-----~~~~i~~~~~g~l~dr~Grr~~~~~~ 96 (418)
+++....++++.+..++++..+++..|.+.++++.++.+.+.. .+... ++..+++++.|+++||+|||++++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~ 92 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT 92 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence 4456777888999999999999999999999999988776543 33322 22347899999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhHH--------HHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHH
Q 014820 97 ALVTAGAGLLSSFSPNYI--------TLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIG 167 (418)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 167 (418)
.++..++.++++++++++ .+++.|++.|++.|.. +....+++|++|+++|++++++...+..+|..+++.+
T Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~ 172 (434)
T PRK15075 93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL 172 (434)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999877 4688999999999987 7777899999999999999999999888888888877
Q ss_pred HHHhh--------cCcchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCC
Q 014820 168 AWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRS 239 (418)
Q Consensus 168 ~~~l~--------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (418)
+..+. +.+|||++|++..+...+........||++++. + + .++.
T Consensus 173 g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~----------~---~---~~~~------------ 224 (434)
T PRK15075 173 GYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFL----------A---R---KHRP------------ 224 (434)
T ss_pred HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHH----------H---h---hhcc------------
Confidence 77652 468999999875433222111111122221100 0 0 0000
Q ss_pred CCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 014820 240 TLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSP 319 (418)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (418)
+....++...++ ++.........+.....++....|.|.|+++.
T Consensus 225 ----------------------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~------ 268 (434)
T PRK15075 225 ----------------------------SMREIFRSLAAN--WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV------ 268 (434)
T ss_pred ----------------------------ccccHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 000012222221 12222223333445566777888889887543
Q ss_pred CccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH-HHHh---hchhHHHHHHHHHHHHH
Q 014820 320 LMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLL-PLVT---YQSNILTTGLLFGARMC 395 (418)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~-~l~~---~~~~~~~~~~~~~~~~~ 395 (418)
.+.+..+.........++++++.++.|+++||+|||+.+..+..+..+... .+.. ..+........++.+++
T Consensus 269 ----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (434)
T PRK15075 269 ----LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFL 344 (434)
T ss_pred ----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 246666777777788888999999999999999999988776554433221 1111 12222222333444555
Q ss_pred HHhhhHhHhhhhccccccccccC
Q 014820 396 VMGAFTVSLIYAAEVKLMTLFTV 418 (418)
Q Consensus 396 ~~~~~~~~~~~~~e~~p~~~R~~ 418 (418)
.+...+..+.+..|.+|++.|+.
T Consensus 345 ~g~~~~~~~~~~~e~~p~~~rg~ 367 (434)
T PRK15075 345 YGSYNGAMVVALTEVMPAEVRTA 367 (434)
T ss_pred HHHHHhhHHHHHHHHCCCCccch
Confidence 56666667788999999999973
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-31 Score=244.86 Aligned_cols=310 Identities=14% Similarity=0.096 Sum_probs=227.5
Q ss_pred HHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 014820 39 MEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLIT 118 (418)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (418)
...+..++..|.+.+++|+|.++.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (377)
T TIGR00890 17 GYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYL 96 (377)
T ss_pred hHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHH-h
Q 014820 119 LRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL-G 196 (418)
Q Consensus 119 ~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~-~ 196 (418)
+|++.|++.+.. +.....+.|++| ++|+++.++...+.++|..+++++...+.+..+||+.|++.+++.++..+.. +
T Consensus 97 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 175 (377)
T TIGR00890 97 TYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAF 175 (377)
T ss_pred HHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887 666677888887 6799999999999999998877777777777899999999888877765443 3
Q ss_pred hccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHh
Q 014820 197 FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLML 276 (418)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 276 (418)
+++++|+.. .+. +++ .+++..+.++.
T Consensus 176 ~~~~~~~~~---~~~--------------~~~-------------------------------------~~~~~~~~~~~ 201 (377)
T TIGR00890 176 LIGYPPGQL---IKT--------------NIE-------------------------------------VSVKDYTVWEM 201 (377)
T ss_pred heecCchhc---ccc--------------Ccc-------------------------------------cchhhhhHHHH
Confidence 444432100 000 000 00001123344
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 014820 277 FSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA 356 (418)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~ 356 (418)
++++..+... ...+...........+.+.+.++. +.+..+.........++.++++++.|++.||+
T Consensus 202 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 267 (377)
T TIGR00890 202 LRTPQFWVLY---LSFFLNAVSGLLLIGLYKPYGQSL-----------GLSDGFLVLAVSISSIFNGGGRPFLGALSDKI 267 (377)
T ss_pred HcCccHHHHH---HHHHHHhHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443322222 222222222222333344443222 35666677778888899999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhchh--HHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 357 GRKLSITIMFTLSCLFLLPLVTYQSN--ILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 357 grr~~l~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
+||+.+..+..+.+++.+.+.+.++. .......++.+++.+...+....+..|.+|++.|+
T Consensus 268 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 330 (377)
T TIGR00890 268 GRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSA 330 (377)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhh
Confidence 99999988888888877766654322 22223345556666666677788899999999886
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-30 Score=245.91 Aligned_cols=339 Identities=15% Similarity=0.085 Sum_probs=233.9
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHH
Q 014820 16 HVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLG 95 (418)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~ 95 (418)
+...++++++.+...+...+..........+..|.+.+++|++.++.+++.+.+.+++.+++++.|+++||+|||+++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~ 106 (476)
T PLN00028 27 LFSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAF 106 (476)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence 33455556667777777777777777888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh---
Q 014820 96 EALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM--- 172 (418)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--- 172 (418)
+.++++++.++.+++++++.++++|++.|++.+.......++.|++|+++||+++++......+|..+++.+.+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~ 186 (476)
T PLN00028 107 LLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLI 186 (476)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998766445567899999999999999998777777777665554432
Q ss_pred -c-----CcchHHHHHHhHHHHHHHHHHHhhccCc-hhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCC
Q 014820 173 -P-----RLDWRWLLGLSSIPSFILLAFLGFQPES-PRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGE 245 (418)
Q Consensus 173 -~-----~~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (418)
+ ..|||+.|++.+++.++..+..++++++ |+ ++.++. .+. .
T Consensus 187 ~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~-------~~~-~------------------- 234 (476)
T PLN00028 187 KDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYREL-------KKS-G------------------- 234 (476)
T ss_pred HhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhH-------Hhc-C-------------------
Confidence 2 2589999999888887765554444432 21 000000 000 0
Q ss_pred CCCccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCC
Q 014820 246 RAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHH 325 (418)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (418)
+.++.+....+++.++. ++++...+.++......+....+.|.++.+. .+
T Consensus 235 -----------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----------~g 284 (476)
T PLN00028 235 -----------------TMPKDSFSKVLRYGVTN---YRTWILALTYGYSFGVELTMDNIIAEYFYDR----------FG 284 (476)
T ss_pred -----------------ccccccHHHHHHHHHcC---chhHHHHHHHHHHHHHHHHHHhHHHHHHHHh----------cC
Confidence 00000111233444443 2233344444444444455566677776432 25
Q ss_pred CCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchh-------HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 014820 326 PQDANLYIDEFITSLAEIPGLLLAAILVDTAGRK-------LSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMG 398 (418)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr-------~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 398 (418)
.+..+++....+.+++++++++++|+++||++|| ........+.+++.+.+....+.+......++.+++.+.
T Consensus 285 ~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ 364 (476)
T PLN00028 285 LSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQA 364 (476)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 7778888888889999999999999999999865 233333333333334333343433444445555565555
Q ss_pred hhHhHhhhhcccccccccc
Q 014820 399 AFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 399 ~~~~~~~~~~e~~p~~~R~ 417 (418)
..+..+.+..+..| +.||
T Consensus 365 ~~~~~~~~~~~~~~-~~~g 382 (476)
T PLN00028 365 ACGATFGIVPFVSR-RSLG 382 (476)
T ss_pred hhhhhcccCcccCh-hhch
Confidence 66667777777665 4554
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-29 Score=235.45 Aligned_cols=319 Identities=12% Similarity=0.059 Sum_probs=230.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHH
Q 014820 21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVT 100 (418)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 100 (418)
+..|+.+..+.++.+......+......|.+.+++|+++++.++..+++.++..+++++.|+++||+|||+++..+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~ 95 (394)
T PRK10213 16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLL 95 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHH
Confidence 34566555555555555555556666788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHH
Q 014820 101 AGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRW 179 (418)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~ 179 (418)
+++.+++.+++|++.+++.|++.|++.|.. +...+++.|++|+++|++++++...+.++|..++|++++.+.+.++||+
T Consensus 96 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~ 175 (394)
T PRK10213 96 TLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRN 175 (394)
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Confidence 999999999999999999999999999988 7778899999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHH-hhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccC
Q 014820 180 LLGLSSIPSFILLAFL-GFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSN 258 (418)
Q Consensus 180 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (418)
.|++.+++.++..+.. ...||.|+. + ++
T Consensus 176 ~f~~~~~l~~~~~l~~~~~~p~~~~~-----~-~~--------------------------------------------- 204 (394)
T PRK10213 176 VFNAAAVMGVLCIFWIIKSLPSLPGE-----P-SH--------------------------------------------- 204 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCcc-----c-cc---------------------------------------------
Confidence 9998877666543332 234543210 0 00
Q ss_pred CCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhccccccCCCccCCCCCChhHHHHHHH
Q 014820 259 GGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLI-SELSSLDTRCRSPLMFSHHPQDANLYIDEFI 337 (418)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (418)
...+.+..++++..+...+ ..+.....++....+. |.+.++ .+.+....+.....
T Consensus 205 ----------~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~-----------~g~s~~~~g~~~~~ 260 (394)
T PRK10213 205 ----------QKQNTFRLLQRPGVMAGMI---AIFMSFAGQFAFFTYIRPVYMNL-----------AGFGVDGLTLVLLS 260 (394)
T ss_pred ----------chhHHHHHhcCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh-----------cCCChhHHHHHHHH
Confidence 0001223344332222222 2222223333333343 444422 24777777888888
Q ss_pred HHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhccccccc
Q 014820 338 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMT 414 (418)
Q Consensus 338 ~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 414 (418)
.+++.+++.++.+++.||.+++..........+..+++.....+.+......++.|++.+...+...+++.+..|++
T Consensus 261 ~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~ 337 (394)
T PRK10213 261 FGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ 337 (394)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc
Confidence 88999999999999999965444333333333333333334444555556667777777777777777788877754
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-31 Score=245.95 Aligned_cols=334 Identities=18% Similarity=0.175 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhH
Q 014820 34 WVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNY 113 (418)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 113 (418)
++....+...++...|.+.+++|++..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++..+.++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 82 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY 82 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH
Confidence 34566777888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHH
Q 014820 114 ITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL 192 (418)
Q Consensus 114 ~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~ 192 (418)
+.+++.|++.|++.+.. +....++.|++|+++|++++++.+....+|..+++.+++.+.+..+||+.|++.+++.++..
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG 162 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 99999999999999988 77888999999999999999999999999999999999998888999999998887777664
Q ss_pred HH-HhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhh
Q 014820 193 AF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLS 271 (418)
Q Consensus 193 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (418)
+. .+..+|+|+.. +...++.++... +... . + . +.++++++...
T Consensus 163 ~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~-~----------~---~---------------~~~~~~~~~~~ 206 (399)
T TIGR00893 163 VLWLKFIPDPPQKA--KWLTEEEKYIVV-----GGLL-A----------E---Q---------------QGKGPSTPKKY 206 (399)
T ss_pred HHhhheecCCCCcc--ccCCHHHHhhcc-----hhhc-c----------c---c---------------ccccccCCCcc
Confidence 44 34455554311 000111000000 0000 0 0 0 00000011122
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHH
Q 014820 272 LFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAI 351 (418)
Q Consensus 272 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~ 351 (418)
+.++.+++ +..+......+.....++....+.|.+..+. .+.+..+.+.......++++++.++.|+
T Consensus 207 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (399)
T TIGR00893 207 QIKELLKD---RRVWGLALGQFLVNIGLGFFLTWFPTYLVQE----------RGLSILEAGFMASLPGIVGFIGMILGGR 273 (399)
T ss_pred chHHHhcC---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------hcccHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34455554 3344444555555556666666777666432 2466677777888888999999999999
Q ss_pred HHhhhchhH--HHHHHHH--HHH--HHHHHHHh--hchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 352 LVDTAGRKL--SITIMFT--LSC--LFLLPLVT--YQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 352 l~d~~grr~--~l~~~~~--~~~--~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
+.||++||+ ....... ... .+...... ....+.. ......+.+..+..+..+.+..|.+|++.|+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 346 (399)
T TIGR00893 274 LSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAA-LALVALGFFGLGAGAIGWALISDNAPGNIAG 346 (399)
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHH-HHHHHHHHhchhhhhHHHHHHHhhcChhHHH
Confidence 999999985 1111111 111 11111111 1222222 2233333333346789999999999999886
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-30 Score=239.11 Aligned_cols=321 Identities=12% Similarity=0.121 Sum_probs=245.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHH
Q 014820 22 YQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTA 101 (418)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 101 (418)
.+++..+.+.+.++..+......+...|.+.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45566667778888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh-cCcchHH
Q 014820 102 GAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM-PRLDWRW 179 (418)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~w~~ 179 (418)
++.++..++++++.+++.|++.|++.|.. +...+++.|++|+++|+++++..+....+|..++|.+.+.+. +..+||+
T Consensus 84 i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~ 163 (394)
T PRK03699 84 LAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYW 163 (394)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 99999999999999999999999999887 777788999999999999999999999999999998887765 4579999
Q ss_pred HHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCC
Q 014820 180 LLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNG 259 (418)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (418)
.|.+.+++.++..+..++ .+.|+. ++.++ ++ .+
T Consensus 164 ~f~~~~~~~~~~~~~~~~-~~~p~~----~~~~~------------~~-----------------~~------------- 196 (394)
T PRK03699 164 VYACIGLVYVAIFILTLF-SEFPAL----GKHAP------------KA-----------------DK------------- 196 (394)
T ss_pred HHHHHHHHHHHHHHHHHh-cCCccc----cccCc------------cc-----------------cC-------------
Confidence 999887776665443332 222210 00000 00 00
Q ss_pred CCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHH
Q 014820 260 GNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITS 339 (418)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (418)
+ .. +....+.++...+..++....++....|.|.+.++. .+.+..+.+.......
T Consensus 197 -------~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----------~g~s~~~~~~~~~~~~ 251 (394)
T PRK03699 197 -------P----VA----KEKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKK----------FGMSLEDAGNLVSNFW 251 (394)
T ss_pred -------c----cc----cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCChHHhhHHHHHHH
Confidence 0 00 000012334444555555566677778889888543 2577777778788888
Q ss_pred hhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhccccccc
Q 014820 340 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMT 414 (418)
Q Consensus 340 ~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 414 (418)
++.++++++.++++||+++|+.+.....+.++...++....+.+...+..++.|++.++.++...++..|..|.+
T Consensus 252 ~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 326 (394)
T PRK03699 252 MAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA 326 (394)
T ss_pred HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 899999999999999999999888777776666655555555445555666777777777788777777777644
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-29 Score=240.46 Aligned_cols=347 Identities=13% Similarity=0.136 Sum_probs=230.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHH
Q 014820 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL 98 (418)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 98 (418)
.++++|..+..+.+.....+.++..++...|.+.++ |+|..+.+++.+.+.+++.+++++.|+++||+|||++++.+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~ 101 (452)
T PRK11273 23 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 101 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHH
Confidence 345566666666677777777777778888998888 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh----hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH-HHHHHHHHhh
Q 014820 99 VTAGAGLLSSFS----PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSV-SEAIGAWIIM 172 (418)
Q Consensus 99 ~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~ 172 (418)
+.+++.++++++ .+++.+++.|++.|++.|.. +.....+.|++|+++|++++++++.+..+|.. .+++++..+.
T Consensus 102 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 181 (452)
T PRK11273 102 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA 181 (452)
T ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999998888775 37888899999999999887 66677888999999999999999999999874 4555443343
Q ss_pred cCcchHHHHHHhHHHHHHH-HHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccc
Q 014820 173 PRLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPEL 251 (418)
Q Consensus 173 ~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (418)
...+||+.|++.+++.++. ++..+++||+|+....+ +.++.+ .+. +. +.+
T Consensus 182 ~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~-------~~~----~~------------~~~----- 232 (452)
T PRK11273 182 WFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP-PIEEYK-------NDY----PD------------DYN----- 232 (452)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-Chhhhh-------hcc----cc------------ccc-----
Confidence 3459999999888776665 44556678776421000 000000 000 00 000
Q ss_pred hhhcccCCCCCcccccchhhHH-HHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChh
Q 014820 252 VHLLSSNGGNKTTEGKSGLSLF-LMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDAN 330 (418)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (418)
+ ++.++.+....+ +.++++ +.++...+..+......++...+.|.|+++.. +.+...
T Consensus 233 --------~-~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~----------g~s~~~ 290 (452)
T PRK11273 233 --------E-KHEQELTAKQIFMQYVLPN---KLLWYIAIANVFVYLLRYGILDWSPTYLKEVK----------HFALDK 290 (452)
T ss_pred --------c-ccCCCccHHHHHHHHHHcC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHH
Confidence 0 000000001111 123333 33444555555555666777888998885432 466667
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhh--chhHHH-HHHHHHHHHHHHHHHh--hchhHHHHHHHHHHHHHHHhhhHhHhh
Q 014820 331 LYIDEFITSLAEIPGLLLAAILVDTA--GRKLSI-TIMFTLSCLFLLPLVT--YQSNILTTGLLFGARMCVMGAFTVSLI 405 (418)
Q Consensus 331 ~~~~~~~~~~~~~~g~~~~g~l~d~~--grr~~l-~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (418)
.+....+..++.+++.++.|+++||+ +||... .....+..++.+.+.. ..+.+...+..+..+....+.......
T Consensus 291 ~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 370 (452)
T PRK11273 291 SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGL 370 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHH
Confidence 77777788889999999999999998 555432 2222333333332222 222222333334444433333344456
Q ss_pred hhcccccccccc
Q 014820 406 YAAEVKLMTLFT 417 (418)
Q Consensus 406 ~~~e~~p~~~R~ 417 (418)
++.|.+|++.||
T Consensus 371 ~~~~~~p~~~~g 382 (452)
T PRK11273 371 HALELAPKKAAG 382 (452)
T ss_pred HHHHHcChhhhh
Confidence 778999999886
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-30 Score=237.15 Aligned_cols=323 Identities=13% Similarity=0.032 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhh
Q 014820 32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSP 111 (418)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 111 (418)
.+.+..........+..|.+..+++.+..+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 85 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVA 85 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666667777888889999999999999999999999999999999999999999999999999888888888777
Q ss_pred -----hHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhH
Q 014820 112 -----NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS 185 (418)
Q Consensus 112 -----~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~ 185 (418)
+++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+..+||+.|++.+
T Consensus 86 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 165 (365)
T TIGR00900 86 LLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDA 165 (365)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999988 7788899999999999999999999999999999999999998899999998877
Q ss_pred HHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCccc
Q 014820 186 IPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTE 265 (418)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (418)
+..++..+..+.++++++. +++.++.. ++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----------------------------------------------~~~ 195 (365)
T TIGR00900 166 VGFAISALLIVSVRIPELA---ASEIQALS-----------------------------------------------NAV 195 (365)
T ss_pred HHHHHHHHHHHhcccccCC---Cccccccc-----------------------------------------------hhH
Confidence 7665554443333211100 00000000 000
Q ss_pred ccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhH
Q 014820 266 GKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVV-LLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIP 344 (418)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (418)
.++....++.+++++..+..... .+.....+.... .+.|.+..+. .+.+..+.+......+++.++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 262 (365)
T TIGR00900 196 LRDTREGIKFVLKNPLLRTLLLL---ALLFNLVFAPAIVALFPYVQSKY----------LGRGSTHYGWVLAAFGLGALL 262 (365)
T ss_pred HHHHHhHHHHHHcCcHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHH----------hCCchHHHHHHHHHHHHHHHH
Confidence 00112244555555443332222 222222222222 3445444321 246777888888888899999
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 345 GLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS-NILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 345 g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
+.++.+++.||.+||+.+..+..+.+++.+.+.+..+ .+...+..++.+++.+...+...++..|.+|++.|+
T Consensus 263 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 336 (365)
T TIGR00900 263 GALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLG 336 (365)
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999988887777777776666543 555666677788888888889999999999999886
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=252.07 Aligned_cols=363 Identities=23% Similarity=0.273 Sum_probs=258.8
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHhhhhhhhhhc-----CCCc--chhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHH
Q 014820 23 QCFVLAYAGLGWVAEAME--IMILSFVGPTVKSEW-----NLSS--TEESLITTSVFAGLVVGAYAWGLVADNYGRRMGF 93 (418)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~s~--~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~ 93 (418)
.........++.+..+++ ....+.....+.++. ..+. .+.+++.+...++..++++++|+++|++|||+.+
T Consensus 43 ~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l 122 (513)
T KOG0254|consen 43 VILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTL 122 (513)
T ss_pred hHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 334444445555555554 344445555554432 2222 3458999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014820 94 LGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM 172 (418)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 172 (418)
+++.++..++.++.++++|+++++++|++.|+|.|.. .+...+++|..|++.||...+..+....+|..++..++....
T Consensus 123 ~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~ 202 (513)
T KOG0254|consen 123 LLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTS 202 (513)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999999 677789999999999999999999999999999966666554
Q ss_pred cC-cchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccc
Q 014820 173 PR-LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPEL 251 (418)
Q Consensus 173 ~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (418)
+. ++||..+.+..+++++..+..+++||+|+|+.++++.+++++.+.++...++.+.+.. . ++.+ .
T Consensus 203 ~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~--~-------~~~~----~ 269 (513)
T KOG0254|consen 203 KVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVE--L-------ELLK----I 269 (513)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHH--H-------HHHH----H
Confidence 43 5899999999998888877788899999999999999999999988876331110000 0 0000 0
Q ss_pred hhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChh
Q 014820 252 VHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLF-GNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDAN 330 (418)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (418)
+.. .+....+....+++++++..+++......... .+...+.....+.++++...+ .+...
T Consensus 270 -~~~------~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g-----------~~~~~ 331 (513)
T KOG0254|consen 270 -KLL------VEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAG-----------LKSDT 331 (513)
T ss_pred -HHH------HhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcC-----------CCCch
Confidence 000 00000111114666666656665555444443 333333444455555554333 33222
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh----ch---------hHHHHHHHHHHHHHHH
Q 014820 331 LYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY----QS---------NILTTGLLFGARMCVM 397 (418)
Q Consensus 331 ~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~----~~---------~~~~~~~~~~~~~~~~ 397 (418)
.....+.++..+++..++.++.||+|||+.++.+...+.++.++++.. .. ........+....+..
T Consensus 332 -~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~ 410 (513)
T KOG0254|consen 332 -FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAI 410 (513)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhc
Confidence 566677788889999999999999999999999999999999888751 10 1122223333344455
Q ss_pred hhhHhHhhhhcccccccccc
Q 014820 398 GAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 398 ~~~~~~~~~~~e~~p~~~R~ 417 (418)
+..++.|.+.+|++|.+.|+
T Consensus 411 g~g~v~w~~~sEifp~~~r~ 430 (513)
T KOG0254|consen 411 GWGPVPWVIVSEIFPLRLRS 430 (513)
T ss_pred ccccchhhhhhccCcHhHHh
Confidence 56689999999999999986
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-29 Score=243.64 Aligned_cols=350 Identities=18% Similarity=0.246 Sum_probs=242.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHH
Q 014820 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV 99 (418)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 99 (418)
++.+|+.+..++++.+...++....++..|.+.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+.++.+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 94 (496)
T PRK03893 15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL 94 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 45677888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchH
Q 014820 100 TAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 178 (418)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~ 178 (418)
.+++.++..+++|++.+++.|++.|++.+.. +....++.|++|+++|++++++...+..+|..+++.+.+.+.+.++||
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~ 174 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWR 174 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 9999999999999999999999999998887 777889999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccC
Q 014820 179 WLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSN 258 (418)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (418)
+.|++..+..++.++.....||++++...+++.++.++..+.... ++
T Consensus 175 ~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------------------------- 221 (496)
T PRK03893 175 ALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYR-GE-------------------------------- 221 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhc-ch--------------------------------
Confidence 999875444433333344456654321111110000000000000 00
Q ss_pred CCCCcccccchhh------HHHHhh----------------------------chhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014820 259 GGNKTTEGKSGLS------LFLMLF----------------------------SSKLARTTILLWLLLFGNSFAYYAVVL 304 (418)
Q Consensus 259 ~~~~~~~~~~~~~------~~~~l~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (418)
.+...... .....+ +...++.........+......+....
T Consensus 222 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (496)
T PRK03893 222 -----HRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQA 296 (496)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHH
Confidence 00000000 000000 000001111111111111111223456
Q ss_pred HHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc-hh-
Q 014820 305 LISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-SN- 382 (418)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~-~~- 382 (418)
+.|.+.++. .+.+..+.+.......++.+++.++.|+++||++||+.+..+..+..+..+.+.... ..
T Consensus 297 ~lp~~l~~~----------~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (496)
T PRK03893 297 LLPTYLKTD----------LGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANV 366 (496)
T ss_pred HHHHHHHhh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHH
Confidence 677777422 257778888888899999999999999999999999988877766665554433322 22
Q ss_pred HHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 383 ILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
+......++.++...+..+....+..|.+|++.|+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 401 (496)
T PRK03893 367 WVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRA 401 (496)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhh
Confidence 22222223333333344566777889999998886
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.5e-30 Score=245.51 Aligned_cols=362 Identities=15% Similarity=0.085 Sum_probs=256.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHH
Q 014820 26 VLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL 105 (418)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 105 (418)
.+..+.++.+....+....++..|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 45566778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHh
Q 014820 106 LSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLS 184 (418)
Q Consensus 106 ~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~ 184 (418)
++++++|++.+++.|++.|++.+.. +...+++.|++|+++|+++++++..+..+|..++|.+++++.++++||+.|++.
T Consensus 83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~ 162 (485)
T TIGR00711 83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN 162 (485)
T ss_pred HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence 9999999999999999999999888 788889999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHH-HHhhccCchhHHHhhcChHHHHHHHH-------HHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcc
Q 014820 185 SIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALE-------KIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLS 256 (418)
Q Consensus 185 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (418)
+++.++..+ ..++.||+++. .+++.+....... .......++..+ .++........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~ 226 (485)
T TIGR00711 163 VPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGW--------------FDSNEILILSI 226 (485)
T ss_pred hHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCC--------------CCchHHHHHHH
Confidence 777666543 34455654321 1111111110000 000000000000 00000000000
Q ss_pred -c-----CCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChh
Q 014820 257 -S-----NGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDAN 330 (418)
Q Consensus 257 -~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (418)
. .....+.+++++..+. ++++++. +.......+...+.+++...+.|.+..+. .+.++.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----------~g~s~~~ 292 (485)
T TIGR00711 227 TGLVAIIAFVVWELTDDNPLVDL-RLFKYRN---FTIGCVYMSLLGLGLYGSFYLLPLYLQQV----------LGYTALQ 292 (485)
T ss_pred HHHHHHHHHHHHHHcCCCCccCH-HHHcCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHH
Confidence 0 0000000000111111 2344322 22233334444555566666677776432 2578888
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh----hchhHHHHHHHHHHHHHHHhhhHhHhhh
Q 014820 331 LYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----YQSNILTTGLLFGARMCVMGAFTVSLIY 406 (418)
Q Consensus 331 ~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (418)
.+.......++.+++.++.|++.||++||+.+..+..+.+++...+.+ ..+.+......++.+++.+...+.....
T Consensus 293 ~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~ 372 (485)
T TIGR00711 293 AGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTI 372 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999999999999999999998888888887776662 1233344555667777777777777777
Q ss_pred hcccccccccc
Q 014820 407 AAEVKLMTLFT 417 (418)
Q Consensus 407 ~~e~~p~~~R~ 417 (418)
..+..|++.|+
T Consensus 373 ~~~~~~~~~~g 383 (485)
T TIGR00711 373 ALSGLPPHKIA 383 (485)
T ss_pred HHhcCCHHHHh
Confidence 77888988776
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=233.18 Aligned_cols=325 Identities=22% Similarity=0.263 Sum_probs=241.4
Q ss_pred HHHHHHHHHHHHHHHhhhh-hhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhh
Q 014820 31 GLGWVAEAMEIMILSFVGP-TVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF 109 (418)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 109 (418)
+++.+..........+..| .+.+++|.|.++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..+
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence 3456667777778888888 889999999999999999999999999999999999999999999999999999666667
Q ss_pred hhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHH
Q 014820 110 SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPS 188 (418)
Q Consensus 110 ~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~ 188 (418)
++|.+.+++.|++.|++.+.. +...+++.|++|+++|++++++...+..+|..++|.+++.+.+..+||+.|++.+++.
T Consensus 82 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~ 161 (352)
T PF07690_consen 82 ASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILS 161 (352)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHH
T ss_pred hhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchh
Confidence 688889999999999999888 8888999999999999999999999999999999999999998899999999998888
Q ss_pred HHHHHH-HhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCccccc
Q 014820 189 FILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGK 267 (418)
Q Consensus 189 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (418)
++..++ ..+++++++....+++.++ +++++
T Consensus 162 ~~~~il~~~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~ 192 (352)
T PF07690_consen 162 LIAAILFILFLPEPPPPRERESPKES-------------------------------------------------ESKKP 192 (352)
T ss_dssp HHHHHHHHCCC---STTTT--SSTTT-------------------------------------------------T--HH
T ss_pred hhhhhhHhhhhhhccccccccccccc-------------------------------------------------ccccc
Confidence 877553 3444443321000000000 00001
Q ss_pred chhh-HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCC-ChhHHHHHHHHHhhhhHH
Q 014820 268 SGLS-LFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQ-DANLYIDEFITSLAEIPG 345 (418)
Q Consensus 268 ~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 345 (418)
++.. .++.+++++..+ ......+.....++....+.|.+..+. .+.+ ..+.+....+..+.++++
T Consensus 193 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 259 (352)
T PF07690_consen 193 KPLKPGFKSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYLQEV----------LGFSGPSQAGLLFSIFGIVGIIG 259 (352)
T ss_dssp HCCCH-CTHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCCHH----------HHCCTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhh---hhhhhhhHHHHHHHHhhcccchhhhhc----------cCCCHHHHHHHHHHHHHHHHHHH
Confidence 1111 244555544322 233333333445555666777663222 2456 567777788888889999
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh---hchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 346 LLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT---YQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 346 ~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
.++.+++.||+++|+..........+..+.+.. ..+........++.+++.+...+....+..|.+|++.||
T Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 334 (352)
T PF07690_consen 260 SLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRG 334 (352)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999887777766666666555554 323455566677788888888999999999999998876
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-29 Score=232.50 Aligned_cols=314 Identities=17% Similarity=0.164 Sum_probs=234.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhh
Q 014820 32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSP 111 (418)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 111 (418)
...+..........+..|.+.+++|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++..+++
T Consensus 12 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 91 (385)
T TIGR00710 12 CLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN 91 (385)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 33445556667777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHH
Q 014820 112 NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFI 190 (418)
Q Consensus 112 ~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~ 190 (418)
+++.+++.|++.|++.+.. +...+++.|++|+++|+++.++.+....+|..+++.+++.+.+..+||..+++.++..++
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 171 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGIL 171 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 9999999999999999988 777889999999999999999999999999999999999998889999999888777666
Q ss_pred HHHH-HhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccch
Q 014820 191 LLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSG 269 (418)
Q Consensus 191 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (418)
..+. .+..||+++. ++.++ .++.
T Consensus 172 ~~~~~~~~~~~~~~~----~~~~~----------------------------------------------------~~~~ 195 (385)
T TIGR00710 172 LSALIFFILPETLPY----EARIQ----------------------------------------------------ISTY 195 (385)
T ss_pred HHHHHHHhCCCCCCC----cccCC----------------------------------------------------HHHH
Confidence 5443 3445554321 00000 0011
Q ss_pred hhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHH
Q 014820 270 LSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLA 349 (418)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 349 (418)
..++++.++++..+ ...+........++....+.|.+..+ ..+.++.+.+.......++.+++.++.
T Consensus 196 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~g~~~~~~~~~~~~~~~~~ 262 (385)
T TIGR00710 196 FETFLLLLKSKMFW---GYALIYGASFGGFFAFFSGAPFVYID----------IMGVSPSVFGLLFALNIIAMIFGGFLN 262 (385)
T ss_pred HHHHHHHHcCchhH---HHHHHHHHHHHHHHHHHHcChHHHHH----------HcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344444443322 22222222233334444444544422 125777788888888889999999999
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHHhh-----chhHHHHHHHHHHHHHHHhhhHhHhhhhccccccc
Q 014820 350 AILVDTAGRKLSITIMFTLSCLFLLPLVTY-----QSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMT 414 (418)
Q Consensus 350 g~l~d~~grr~~l~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 414 (418)
+++.||+++|+.+..+..+..++.+++... ...........+.+++.+...+.......|..|++
T Consensus 263 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 332 (385)
T TIGR00710 263 GRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPHV 332 (385)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 999999999998888877776666555432 12223333455566777777788888888888753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=241.64 Aligned_cols=288 Identities=14% Similarity=0.137 Sum_probs=223.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----------------------hcCCCcchhHHHHHHHHHHHHHH
Q 014820 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKS----------------------EWNLSSTEESLITTSVFAGLVVG 76 (418)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~~~~~s~~~~~~~i~ 76 (418)
+.+.+|.+..+++++....+.++..++...+.+.+ +++++..+.|++.+.+.+++.++
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~ 92 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII 92 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence 46678888888899999999999999998888876 78999999999999999999999
Q ss_pred HhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHH
Q 014820 77 AYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS--PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIF 153 (418)
Q Consensus 77 ~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~ 153 (418)
+++.|+++||+|||+++..+.++++++.++..++ .+++.+++.|+++|++.+.. +....++.|++|+++|++++++.
T Consensus 93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 172 (465)
T TIGR00894 93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS 172 (465)
T ss_pred HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999999999888876544 56888999999999999998 78888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCc-chHHHHHHhHHHHHHHHHHHh-hccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCC
Q 014820 154 SSFWTIGSVSEAIGAWIIMPRL-DWRWLLGLSSIPSFILLAFLG-FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPN 231 (418)
Q Consensus 154 ~~~~~~g~~~~~~~~~~l~~~~-~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (418)
..+..+|.++++++++.+.+.. +||.+|++.+++.++..+.++ +.+|+|+.. .+.+.+| ++. ..+..++
T Consensus 173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~-~~~---i~~~~~~---- 243 (465)
T TIGR00894 173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH-PCISKFE-KKY---INSSLQG---- 243 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC-CCCCHHH-HHH---HHhhccc----
Confidence 9999999999999999998884 999999999888877655444 455665421 0111111 111 1000000
Q ss_pred CcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014820 232 GKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSS 311 (418)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (418)
++++.+.+.++++++++ +.++...+..++....++....|.|.|+.
T Consensus 244 -------------------------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~lp~~l~ 289 (465)
T TIGR00894 244 -------------------------------QKGSTRQSLPIKAIPKS---LPVWAIWFAIFGHFWLYTILPTYLPTFIS 289 (465)
T ss_pred -------------------------------ccCCCCCCCCHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000011245666665 34555666667777777888889998885
Q ss_pred ccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchh
Q 014820 312 LDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRK 359 (418)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr 359 (418)
+. .+.+..+.++...+..++.+++.+++|+++||+++|
T Consensus 290 ~~----------~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~ 327 (465)
T TIGR00894 290 WV----------LRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSS 327 (465)
T ss_pred HH----------hCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 43 257778888888888899999999999999997643
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=233.39 Aligned_cols=300 Identities=14% Similarity=0.096 Sum_probs=223.8
Q ss_pred HHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 014820 41 IMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLR 120 (418)
Q Consensus 41 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 120 (418)
....++..|.+.+++|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.+++.|
T Consensus 25 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r 104 (393)
T PRK09705 25 LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSA 104 (393)
T ss_pred hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHH
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCc-chHHHHHHhHHHHHHHHHHHhhc
Q 014820 121 CLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL-DWRWLLGLSSIPSFILLAFLGFQ 198 (418)
Q Consensus 121 ~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~w~~~~~~~~~~~~~~~~~~~~~ 198 (418)
++.|++.+.. +.....+.+++| ++|+++++++..+..+|..+++.+++++.++. +||..+.+.++..++..+..+..
T Consensus 105 ~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 183 (393)
T PRK09705 105 LLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQ 183 (393)
T ss_pred HHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 666678889887 88999999999999999999999999888765 89998877665544433332222
Q ss_pred cC-chhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhh
Q 014820 199 PE-SPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLF 277 (418)
Q Consensus 199 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 277 (418)
.+ .|+ .++ ++ + . ..++.+
T Consensus 184 ~~~~~~-------~~~------------~~----------------------------------~----~----~~~~~l 202 (393)
T PRK09705 184 SAREVA-------SSH------------KT----------------------------------T----T----TPVRVV 202 (393)
T ss_pred hcCCCc-------ccc------------CC----------------------------------C----c----CCcccc
Confidence 11 110 000 00 0 0 000111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhc
Q 014820 278 SSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAG 357 (418)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~g 357 (418)
++ +..+......+.....+++...|.|.+..+. +.+..+.+....+.+++.++++++.+++.||++
T Consensus 203 ~~---~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~-----------g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~ 268 (393)
T PRK09705 203 FT---PRAWTLGVYFGLINGGYASLIAWLPAFYIEI-----------GASAQYSGSLLALMTLGQAAGALLMPAMARHQD 268 (393)
T ss_pred cC---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 11 2223333444445567777888888887543 577788888888999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhccccc-ccccc
Q 014820 358 RKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKL-MTLFT 417 (418)
Q Consensus 358 rr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~R~ 417 (418)
||+....+..+.+++.+.+........ .....+.+++.+...+.......+.++ ++.|+
T Consensus 269 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g 328 (393)
T PRK09705 269 RRKLLMLALVLQLVGFCGFIWLPLQLP-VLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAG 328 (393)
T ss_pred chHHHHHHHHHHHHHHHHHHHccchHH-HHHHHHHHHhccchHHHHHHHHHhhcCCHHHHH
Confidence 999988887777776655443222111 122344566666777777666667764 45543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=236.76 Aligned_cols=335 Identities=18% Similarity=0.195 Sum_probs=231.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhh
Q 014820 33 GWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPN 112 (418)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 112 (418)
+++..+.+...++...|.+.+++|+|.++.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++..++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 82 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS 82 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh
Confidence 45667788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHH-HHHHHhhcCcchHHHHHHhHHHHHH
Q 014820 113 YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEA-IGAWIIMPRLDWRWLLGLSSIPSFI 190 (418)
Q Consensus 113 ~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~w~~~~~~~~~~~~~ 190 (418)
++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..+++ .++..+.+..+||+.|++.+++.++
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAII 162 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 999999999999999987 78888999999999999999999999999999999 5777777788999999888877666
Q ss_pred H-HHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccch
Q 014820 191 L-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSG 269 (418)
Q Consensus 191 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (418)
. ++..++.+|+|+.. +..++ ++. + ++ +.++.+ ++.+++.+..
T Consensus 163 ~~~~~~~~~~~~~~~~---~~~~~-----------~~~--~------~~--~~~~~~-------------~~~~~~~~~~ 205 (379)
T TIGR00881 163 VSLICFLLLRDSPQSC---GLPPA-----------EEM--P------NE--EPDGDA-------------EKKEEELTKK 205 (379)
T ss_pred HHHHHheeeCCCcccc---ccCcc-----------ccC--c------cc--cccccc-------------ccccccccch
Confidence 5 34444556654310 00000 000 0 00 000000 0000001111
Q ss_pred hhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHH
Q 014820 270 LSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLA 349 (418)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 349 (418)
....+.+++++. .+...+..+......+....+.|.+..+. .+.++.+.+.......++.+++.++.
T Consensus 206 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~ 272 (379)
T TIGR00881 206 QIFLQYVLLNKV---LWYISLGYVFVYVVRTGILDWSPLYLTQE----------KGFSKEKASWAFTLYELGGLVGTLLA 272 (379)
T ss_pred HHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHcchhHHHH
Confidence 223444555432 33333444444445555566667666432 25777788888888889999999999
Q ss_pred HHHHhhhc-hhHH-HHHH-HHHHHHHHHHHHh--hchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 350 AILVDTAG-RKLS-ITIM-FTLSCLFLLPLVT--YQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 350 g~l~d~~g-rr~~-l~~~-~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
+++.||.. ||+. .... .....++...+.. ..+........++.++...+..+....+..|.+|++.|+
T Consensus 273 g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 345 (379)
T TIGR00881 273 GWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAG 345 (379)
T ss_pred HHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhH
Confidence 99999863 3332 2222 2222222222222 222233334445555555555566778899999999886
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-28 Score=227.58 Aligned_cols=326 Identities=11% Similarity=0.022 Sum_probs=235.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHH
Q 014820 21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVT 100 (418)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 100 (418)
+.....+....+.++..+......++..|.+++++|+|+.+.++..+.+.+++.+++++.|+++||+|||+++..+.+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~ 101 (438)
T PRK10133 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 33455556666777888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---hhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc-C-
Q 014820 101 AGAGLLS---SFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-R- 174 (418)
Q Consensus 101 ~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~- 174 (418)
+++.+++ .++++++.++++|+++|++.|.. ....+++.|+.|+++|.+.+++.+....+|..+++.++..+.. .
T Consensus 102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~ 181 (438)
T PRK10133 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999875 46889999999999999999998 7778888898777777778999999999999999998875430 0
Q ss_pred ------------------------cchHHHHHHhHHH-HHHHHHH-HhhccCchhHHHhhcChHHHHHHHHHHHHhcCCC
Q 014820 175 ------------------------LDWRWLLGLSSIP-SFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTK 228 (418)
Q Consensus 175 ------------------------~~w~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (418)
.+||.+|+....+ .++..+. ....||.+. ++.++
T Consensus 182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~-----~~~~~--------------- 241 (438)
T PRK10133 182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS-----DNHSD--------------- 241 (438)
T ss_pred cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----ccccc---------------
Confidence 2566666543332 2222222 222332110 00000
Q ss_pred CCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014820 229 LPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISE 308 (418)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (418)
++..+...+.+++++++..+...+. .++.....++...|.+.
T Consensus 242 -----------------------------------~~~~~~~~~~~~ll~~~~~~~~~l~---~~~~~~~~~~~~~~~~~ 283 (438)
T PRK10133 242 -----------------------------------AKQGSFSASLSRLARIRHWRWAVLA---QFCYVGAQTACWSYLIR 283 (438)
T ss_pred -----------------------------------ccccchhhhHHHHHhCchHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 0000011234455555433322222 23333444444445555
Q ss_pred hhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 014820 309 LSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGL 388 (418)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 388 (418)
+..+ +..+.++.+.+.......++.++|+++++++.||+++|+.+..+..+.++.+++..+..+. .....
T Consensus 284 ~l~~---------~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 353 (438)
T PRK10133 284 YAVE---------EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIA 353 (438)
T ss_pred HHhh---------hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHH
Confidence 5311 1236888888999999999999999999999999999999888877776665555443332 33455
Q ss_pred HHHHHHHHHhhhHhHhhhhccccccc
Q 014820 389 LFGARMCVMGAFTVSLIYAAEVKLMT 414 (418)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~e~~p~~ 414 (418)
..+.+++.+..+|..++...|.+|++
T Consensus 354 ~~l~glg~~~i~P~~~s~a~~~~~~~ 379 (438)
T PRK10133 354 LTLCSAFMSIQYPTIFSLGIKNLGQD 379 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchh
Confidence 67788999999999999999998874
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-29 Score=232.32 Aligned_cols=313 Identities=14% Similarity=-0.000 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHH
Q 014820 25 FVLAYAGLGWVAEAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGA 103 (418)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 103 (418)
+.+....+..+....+..+..+.+|. +.+++|.|..+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 94 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS 94 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence 33444556666667777777777776 57889999999999999999999999999999999999999999999888877
Q ss_pred HHHHhhh--------hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014820 104 GLLSSFS--------PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR 174 (418)
Q Consensus 104 ~~~~~~~--------~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 174 (418)
.+.+.++ .+++.+++.|++.|++.+.. +....++.|++|+++|++++++...+..+|.++++.+++.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 174 (399)
T PRK05122 95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW 174 (399)
T ss_pred HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence 6655443 25678899999999999988 77778889999999999999999999999999999999999989
Q ss_pred cchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhh
Q 014820 175 LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHL 254 (418)
Q Consensus 175 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (418)
.||+..+++..+..++..+.....|++++ +.++
T Consensus 175 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----------------------------------------- 207 (399)
T PRK05122 175 GGLAGLGLLIMLLALLGLLLARPRPAVPP------VKGE----------------------------------------- 207 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCCCCC------CCcc-----------------------------------------
Confidence 99999887765554433322221121110 0000
Q ss_pred cccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHH
Q 014820 255 LSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYID 334 (418)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (418)
+.++++.+++. ++. ..........+.....+.+.+..+. +.+ +....
T Consensus 208 ---------------~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~--~~~~~ 254 (399)
T PRK05122 208 ---------------RLPFRRVLGRV-WPY----GMGLALASIGFGTIATFITLYYAAR-----------GWD--GAALA 254 (399)
T ss_pred ---------------chhHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHc-----------ccc--cchHH
Confidence 00111111111 111 1111122233334444555554322 122 23344
Q ss_pred HHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhccccccc
Q 014820 335 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMT 414 (418)
Q Consensus 335 ~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 414 (418)
....+++.+++.++.|++.||+++|+.+..+..+.+++.+.+....+.+...+..++.+++.+..++.......|.+|++
T Consensus 255 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~ 334 (399)
T PRK05122 255 LTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQ 334 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHH
Confidence 55667888899999999999999999988888888877777766655555666667788888777787778888999988
Q ss_pred ccc
Q 014820 415 LFT 417 (418)
Q Consensus 415 ~R~ 417 (418)
.|+
T Consensus 335 ~~g 337 (399)
T PRK05122 335 NRG 337 (399)
T ss_pred HHH
Confidence 876
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=229.50 Aligned_cols=316 Identities=15% Similarity=0.095 Sum_probs=227.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHH
Q 014820 27 LAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLL 106 (418)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 106 (418)
+....+..+..+.......+.+|.+.+++|.+.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l 84 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM 84 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 44455566777777778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhH
Q 014820 107 SSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS 185 (418)
Q Consensus 107 ~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~ 185 (418)
+++++|++.+++.|++.|++.+.. +....++.|++|+++|++++++...+..+|..+++++++++.+..+||+.|++.+
T Consensus 85 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~ 164 (382)
T PRK10091 85 FTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIA 164 (382)
T ss_pred HHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHH
Confidence 999999999999999999999887 6667788999999999999999999999999999999999988899999999988
Q ss_pred HHHHHHHH-HHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcc
Q 014820 186 IPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT 264 (418)
Q Consensus 186 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (418)
+..++..+ ....+||.++ +.+. +
T Consensus 165 ~~~~~~~~~~~~~lp~~~~----~~~~-~--------------------------------------------------- 188 (382)
T PRK10091 165 VFNIAVLASIYFWVPDIRD----EAKG-G--------------------------------------------------- 188 (382)
T ss_pred HHHHHHHHHHHHhCCCCCc----cccc-C---------------------------------------------------
Confidence 77666543 3445665421 0000 0
Q ss_pred cccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhH
Q 014820 265 EGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIP 344 (418)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (418)
.+..++ .++++. .+......+......+....+.+.+..+ ..+.++.+.+......+++.++
T Consensus 189 ----~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~s~~~~~~~~~~~~~~~~i 250 (382)
T PRK10091 189 ----LREQFH-FLRSPA---PWLIFAATMFGNAGVFAWFSYIKPYMMF----------ISGFSETSMTFIMMLVGLGMVL 250 (382)
T ss_pred ----HHHHHH-HhcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCCCHHHHHHHHHHHHHHHHH
Confidence 000111 122211 1122121222222222222333334322 1257778888888889999999
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHhhhH-hHhhhhccccccccc
Q 014820 345 GLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQSNILTTGLLFGARMCVMGAFT-VSLIYAAEVKLMTLF 416 (418)
Q Consensus 345 g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~R 416 (418)
+.++.+++.||+++|+.+..+..+.+++.+++.. .++.+...+..++.+.+..+..+ .......+..|.+.+
T Consensus 251 g~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (382)
T PRK10091 251 GNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELL 324 (382)
T ss_pred HhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHH
Confidence 9999999999999999988888877777655543 33333333444444444433333 233344454554443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=229.28 Aligned_cols=330 Identities=15% Similarity=0.142 Sum_probs=229.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 014820 29 YAGLGWVAEAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS 107 (418)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 107 (418)
..+++++.........++..|. +.+++|+|..+.+++.+++.+++.+++++.|+++||+|||+.++++.++.+++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~ 84 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA 84 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 4556666777777888999995 889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh-hHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc----------Ccc
Q 014820 108 SFSP-NYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP----------RLD 176 (418)
Q Consensus 108 ~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----------~~~ 176 (418)
.+++ +++.+++.|++.|++.+......+++.|++|+++|++++++......+|..+++.+++.+.. +.+
T Consensus 85 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~ 164 (366)
T TIGR00886 85 GLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLA 164 (366)
T ss_pred HHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9999 99999999999999866556667889999999999999999997777887777777665543 348
Q ss_pred hHHHHH-HhHHHHHHH-HHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhh
Q 014820 177 WRWLLG-LSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHL 254 (418)
Q Consensus 177 w~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (418)
||+.|+ ..++...+. .+...+.+|+|+. +.++.+. +.+. . .
T Consensus 165 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--------~~~~------------~----~-------- 207 (366)
T TIGR00886 165 WGWAFVIVPAGILLLPALLIFFVGADTPPG-----KPATGKL--------SFKG------------A----R-------- 207 (366)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcccCCcc-----cccchhc--------cccc------------c----c--------
Confidence 999984 434444443 3344445655431 0000000 0000 0 0
Q ss_pred cccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHH
Q 014820 255 LSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYID 334 (418)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (418)
...+++...+.++.++++ ..+...+..+.....++....+.+.+..+. .+.++.+.+..
T Consensus 208 --------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~ 266 (366)
T TIGR00886 208 --------WSVGTGALGDQLKVFRDR---HTWILALLYSVTFGSFLGVSSIFAMFFKDQ----------FGLSKVTAGAY 266 (366)
T ss_pred --------ccccchhHHHHHHHHhcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCcHHHHHHH
Confidence 000000111333344432 233333333444444555566667666432 25677777777
Q ss_pred HHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh--hc--hhHHHHHHHHHHHHHHHhhhHhHhhhhccc
Q 014820 335 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--YQ--SNILTTGLLFGARMCVMGAFTVSLIYAAEV 410 (418)
Q Consensus 335 ~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 410 (418)
.....+.++++++++|++.||+|||+.+..+....+.+..++.. .. +.+.......+..+..+...+..+.+..|+
T Consensus 267 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 346 (366)
T TIGR00886 267 ASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHI 346 (366)
T ss_pred HHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhh
Confidence 77888889999999999999999988777776666655555443 22 333344445555556666667788888888
Q ss_pred ccccccc
Q 014820 411 KLMTLFT 417 (418)
Q Consensus 411 ~p~~~R~ 417 (418)
+|. .||
T Consensus 347 ~~~-~~g 352 (366)
T TIGR00886 347 FRR-ATG 352 (366)
T ss_pred chh-hcc
Confidence 874 444
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=225.83 Aligned_cols=315 Identities=12% Similarity=0.025 Sum_probs=229.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHH
Q 014820 22 YQCFVLAYAGLGWVAEAMEIMILSFVGPTVKS-EWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVT 100 (418)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 100 (418)
-.++.+.+..++.+.........+++.+.+.+ ++|+|.+|.+++.+++.+++.++.++.|++.||+|+|+++.++.++.
T Consensus 31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~ 110 (462)
T PRK15034 31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAIL 110 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 35678888888888999999999999998876 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh-----hhHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh---
Q 014820 101 AGAGLLSSFS-----PNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM--- 172 (418)
Q Consensus 101 ~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--- 172 (418)
++..+..+++ ++++.+++.|++.|++.+..++....+++++|+++||+++|+.....++|..+++++...+.
T Consensus 111 ~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~ 190 (462)
T PRK15034 111 IIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVP 190 (462)
T ss_pred HHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999998886 89999999999999984434778889999999999999999997677777766655554422
Q ss_pred --c-------------CcchHHHHHHhHHHHHHHHHHHhh-ccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccc
Q 014820 173 --P-------------RLDWRWLLGLSSIPSFILLAFLGF-QPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVA 236 (418)
Q Consensus 173 --~-------------~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (418)
. ..+||.+.++..++.++..+..++ .++.|+ .+
T Consensus 191 l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~---------------------------- 239 (462)
T PRK15034 191 VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SR---------------------------- 239 (462)
T ss_pred HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cc----------------------------
Confidence 1 334888877777766665444443 333221 00
Q ss_pred cCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 014820 237 RRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRC 316 (418)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (418)
....+....+|+ +.+|..++.+++....+.+...+.|.|.++.
T Consensus 240 -------------------------------~~~~~~~~vlk~---~~~Wllslly~~tFG~fvg~s~~lp~~~~~~--- 282 (462)
T PRK15034 240 -------------------------------ASIADQLPVLQR---LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQ--- 282 (462)
T ss_pred -------------------------------cCHHHHHHHhCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 011133334444 4456667777777777777777888776431
Q ss_pred cCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh-hc-----hhHHHHHHHH
Q 014820 317 RSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQ-----SNILTTGLLF 390 (418)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~-~~-----~~~~~~~~~~ 390 (418)
.+.........+..+...++++++|+++||+|+++++.++++.+.++...... .+ +.+......+
T Consensus 283 ---------~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~ 353 (462)
T PRK15034 283 ---------FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFM 353 (462)
T ss_pred ---------cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 22233333344556778888999999999999999999888877776543322 11 2233333333
Q ss_pred HHHHHHHhhhHhHhhhhcccccc
Q 014820 391 GARMCVMGAFTVSLIYAAEVKLM 413 (418)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~e~~p~ 413 (418)
...++.+......+-++.+++|+
T Consensus 354 ~l~~~~G~gngsvfk~ip~~f~~ 376 (462)
T PRK15034 354 GLFLTAGLGSGSTFQMIAVIFRQ 376 (462)
T ss_pred HHHHHhcccchHHHHhhHHHHhh
Confidence 33455555666777777788874
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-28 Score=227.01 Aligned_cols=328 Identities=14% Similarity=-0.021 Sum_probs=236.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHH
Q 014820 21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVT 100 (418)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 100 (418)
+..+.....+.+..+........+.+..|.+.+++|.|..+.++..+.+.+++.+++++.|.++||+|||+++..+..+.
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 88 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF 88 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 44555666667777777777788888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHH
Q 014820 101 AGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRW 179 (418)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~ 179 (418)
+++.++..++++++.+++.|++.|++.+.. +...+.+.|.+|+++|+++.++......+|..++|.+++.+.++.+||+
T Consensus 89 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~ 168 (406)
T PRK15402 89 ILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRG 168 (406)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccH
Confidence 999999999999999999999999999887 7777889999999999999999988888999999999999988889999
Q ss_pred HHHHhHHHHHHHHHH-HhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccC
Q 014820 180 LLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSN 258 (418)
Q Consensus 180 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (418)
.|++.++..++..+. ....||+++.. ++..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------------------------------------------- 200 (406)
T PRK15402 169 MFVLFAALAALSFFGLWRAMPETAGRV---GEKLS--------------------------------------------- 200 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCccc---ccccc---------------------------------------------
Confidence 998888777665443 34456543210 00000
Q ss_pred CCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHH
Q 014820 259 GGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFIT 338 (418)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (418)
.++...+++.+++++..+ ...+..+.....++....+.|.+..+. .+.++.+.+......
T Consensus 201 -------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~----------~g~~~~~~g~~~~~~ 260 (406)
T PRK15402 201 -------LKELGRDYKLVLKNRRFV---AGALALGLVSLPLLAWIALSPVILISG----------EQLSSYEYGLLQVPV 260 (406)
T ss_pred -------HHHHHHHHHHHHcCcHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHH----------hCCCHHHHHHHHHHH
Confidence 001122445555554322 222222222233333333445444221 246666666666666
Q ss_pred HhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh-----chhHHHHHHHHHHHHHHHhhhHhHhhhhcccccc
Q 014820 339 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-----QSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLM 413 (418)
Q Consensus 339 ~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 413 (418)
.++.+++.++.+++.||+++|+.+..+..+.+++.+.+... .+.+......++.+++.+...+..+.......|
T Consensus 261 ~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~- 339 (406)
T PRK15402 261 FGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD- 339 (406)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-
Confidence 77888999999999999999999888887777666655442 223334445566666666666655554443333
Q ss_pred cccc
Q 014820 414 TLFT 417 (418)
Q Consensus 414 ~~R~ 417 (418)
+.|+
T Consensus 340 ~~~g 343 (406)
T PRK15402 340 VSKG 343 (406)
T ss_pred cccc
Confidence 5554
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-28 Score=228.40 Aligned_cols=345 Identities=15% Similarity=0.118 Sum_probs=225.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHH
Q 014820 21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVT 100 (418)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 100 (418)
+.++..+....+.+...+.+...+....|.+.+ +|++.++.+++.+++.++..+++++.|+++||+|||+++..+.++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~ 101 (438)
T TIGR00712 23 RLRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence 345666666667777777777777777888775 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh----hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh-cC
Q 014820 101 AGAGLLSSFS----PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM-PR 174 (418)
Q Consensus 101 ~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~ 174 (418)
+++.++..+. ++++.+.+.|++.|++.|.. +.....+.|++|+++|++++++++.+..+|..+++.+.+... ..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 181 (438)
T TIGR00712 102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF 181 (438)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence 9988877654 46778889999999999887 767788899999999999999999999999999887766544 45
Q ss_pred cchHHHHHHhHHHHHHH-HHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchh
Q 014820 175 LDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVH 253 (418)
Q Consensus 175 ~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (418)
.+||..|++.+++.++. ++..+++||+|+.. +..+. ++ . ++ +.++ +..
T Consensus 182 ~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~-~~----~---~~-~~~~------------~~~------- 230 (438)
T TIGR00712 182 NDWHAALYFPAICAIIVALFAFAMMRDTPQSC---GLPPI-EE----Y---RN-DYPD------------DYN------- 230 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhc---CCCCc-hh----c---cc-cccc------------ccc-------
Confidence 79999999988887765 44556677765421 00000 00 0 00 0000 000
Q ss_pred hcccCCCCCcccccchhhH-HHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHH
Q 014820 254 LLSSNGGNKTTEGKSGLSL-FLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLY 332 (418)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (418)
+ +++.+.+.+.. .+.+++++ .++......+......++...+.|.+..+. .+.++.+.+
T Consensus 231 ------~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----------~g~s~~~~~ 290 (438)
T TIGR00712 231 ------E-KAEQELTAKEIFMQYVLPNK---LLWYIAIANVFVYLLRYGVLDWSPTYLKEV----------KHFALDKSS 290 (438)
T ss_pred ------c-ccccccchHHHHHHHHccCc---hHHHHHHHHHHHHHHHHHHHHhHHHHHHHc----------cCCChhhHH
Confidence 0 00000001111 12234443 233333333344455667777888888543 256777778
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHH---HHHHHHHHhh--chhHHHHHHHHHHHHHHHhhhHhHhhhh
Q 014820 333 IDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLS---CLFLLPLVTY--QSNILTTGLLFGARMCVMGAFTVSLIYA 407 (418)
Q Consensus 333 ~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~---~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (418)
+...+..+.++++.+++|++.||+++++....+.... .++.+.+... .+.+......+..++...+.........
T Consensus 291 ~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 370 (438)
T TIGR00712 291 WAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHA 370 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 8888888999999999999999995432212222211 1122222221 1222222333333333322222334567
Q ss_pred cccccccccc
Q 014820 408 AEVKLMTLFT 417 (418)
Q Consensus 408 ~e~~p~~~R~ 417 (418)
.|.+|++.|+
T Consensus 371 ~~~~~~~~~g 380 (438)
T TIGR00712 371 LELAPKKAAG 380 (438)
T ss_pred HHhcChhhee
Confidence 8999998886
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-28 Score=231.95 Aligned_cols=350 Identities=11% Similarity=0.037 Sum_probs=241.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHH
Q 014820 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL 98 (418)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 98 (418)
.+.++|.++..+.+...........++...|.+.+++|++.++.+++.+.+.++..++.++.|+++||+|||++++.+.+
T Consensus 13 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 92 (455)
T TIGR00892 13 DGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGL 92 (455)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHH
Confidence 35677877777777766655566667888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHH-HHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 014820 99 VTAGAGLLSSFSPNYITLIT-LRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD 176 (418)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 176 (418)
+.+++.++++++++++.+++ .|++.|++.+.. +.....+.++++ ++|+++.++.+.+..+|..++|++++.+.+.+|
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g 171 (455)
T TIGR00892 93 LASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG 171 (455)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998875 578999999876 666677788886 789999999999999999999999999988899
Q ss_pred hHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcc
Q 014820 177 WRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLS 256 (418)
Q Consensus 177 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (418)
||++|++.+++.++..+..+++.+.++.. +...++. .++. .++.. .++.+
T Consensus 172 wr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~---------~~~~-~~~~~--------~~~~~---------- 221 (455)
T TIGR00892 172 WRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSKSKS---------KEGL-PPDGS--------TKKLS---------- 221 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCccc--ccccccc---------cccC-CCCCc--------ccccc----------
Confidence 99999999887776544444433221100 0000000 0000 00000 00000
Q ss_pred cCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHH
Q 014820 257 SNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEF 336 (418)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (418)
.++..++..+..++ ++++++ .++......+.....++....+.+.+..+. +.+..+.+....
T Consensus 222 ---~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-----------g~s~~~~g~~~~ 283 (455)
T TIGR00892 222 ---KKSTAEKINRFLDF-SLFTHR---GFLVYLSGNVIMFLGFFAPIIFLVPYAKDK-----------GVDEYEAAFLLS 283 (455)
T ss_pred ---ccchhhhhhhhcch-HHhcCc---hHHHHHHHHHHHHHHccchHHHHHHHHHHc-----------CCCHHHHHHHHH
Confidence 00000000001112 244432 233333344444555566666777776432 577788888888
Q ss_pred HHHhhhhHHHHHHHHHHhhh--chhHHHHH--HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhccccc
Q 014820 337 ITSLAEIPGLLLAAILVDTA--GRKLSITI--MFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKL 412 (418)
Q Consensus 337 ~~~~~~~~g~~~~g~l~d~~--grr~~l~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 412 (418)
+.+++.++++++.|++.||. ++|+.... +....+++.++.....+.+...+..++.+++.+...+..++++.|.+|
T Consensus 284 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~ 363 (455)
T TIGR00892 284 IIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVG 363 (455)
T ss_pred HHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhh
Confidence 88999999999999999973 33333322 333334444444445555566666777888888788888899999999
Q ss_pred ccccc
Q 014820 413 MTLFT 417 (418)
Q Consensus 413 ~~~R~ 417 (418)
++.|+
T Consensus 364 ~~~~g 368 (455)
T TIGR00892 364 AQRFS 368 (455)
T ss_pred HHHHh
Confidence 88765
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-29 Score=218.78 Aligned_cols=327 Identities=16% Similarity=0.102 Sum_probs=262.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHH
Q 014820 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL 98 (418)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 98 (418)
.++.+++.+.+..+.........+.++++.+.+.+++|+|++|.+++.++..+...+..++.|.+.||+|.|++..++.+
T Consensus 8 ~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~ 87 (417)
T COG2223 8 GKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSML 87 (417)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHH
Confidence 34566777888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh---hHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 014820 99 VTAGAGLLSSFSP---NYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL 175 (418)
Q Consensus 99 ~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 175 (418)
+..+.++..+++. +++++++.+.+.|++.+...+..+++++++||+++|.++|++. ..++|..+..++++.+....
T Consensus 88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~ 166 (417)
T COG2223 88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF 166 (417)
T ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence 9999999888875 4569999999999998888999999999999999999999999 88999999999999988888
Q ss_pred c---hHHHHHHhHHHHHHH-HHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccc
Q 014820 176 D---WRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPEL 251 (418)
Q Consensus 176 ~---w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (418)
+ |+.+-.+..+..++. +..++...|.|+... +.++.+
T Consensus 167 g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~---~~~~~~------------------------------------ 207 (417)
T COG2223 167 GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRA---SVKPQL------------------------------------ 207 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhc---cccccc------------------------------------
Confidence 8 999888877776665 444555666554210 000000
Q ss_pred hhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhH
Q 014820 252 VHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL 331 (418)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (418)
..+++.++++ +..|..++.++.+...+-+...+.|.|.++ .++.++.++
T Consensus 208 ------------------~~~~~~v~~~---~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~----------~fg~~~~~A 256 (417)
T COG2223 208 ------------------PAQLKAVFSN---KDTWLLSLLYFATFGGFVGFSAYLPMYLVT----------QFGLSPVTA 256 (417)
T ss_pred ------------------hhHHHHHhcC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCCChhhH
Confidence 0234444444 566777888888788888888888888854 347888888
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc-------hhHHHHHHHHHHHHHHHhhhHhHh
Q 014820 332 YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-------SNILTTGLLFGARMCVMGAFTVSL 404 (418)
Q Consensus 332 ~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 404 (418)
+.......+.+.+.++.+|+++||+|.++.+...+..++++..++.... +........+..+.+.+......+
T Consensus 257 g~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvf 336 (417)
T COG2223 257 GLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVF 336 (417)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchhe
Confidence 8888888899999999999999999999999999999998888877632 333444444555566666666777
Q ss_pred hhhccccccccc
Q 014820 405 IYAAEVKLMTLF 416 (418)
Q Consensus 405 ~~~~e~~p~~~R 416 (418)
-++..++|.+..
T Consensus 337 k~Ip~if~~~~G 348 (417)
T COG2223 337 KMIPVIFPKETG 348 (417)
T ss_pred eechHHHHhhhh
Confidence 777777776543
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=237.29 Aligned_cols=326 Identities=29% Similarity=0.416 Sum_probs=259.7
Q ss_pred hhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-H
Q 014820 53 SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-H 131 (418)
Q Consensus 53 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~ 131 (418)
+.++.+.....+..+++.+|..+|++++|.++||+|||++++.+.++.+++.++.++++|++.+++.|++.|++.+.. .
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 455667778899999999999999999999999999999999999999999999999999999999999999999888 8
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcCh
Q 014820 132 VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRT 211 (418)
Q Consensus 132 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (418)
+...++.|+.++++|+.+..+ ......+..+++..++++.. +||+.+++..++.++.++.+++.+|+|+|+..+++.
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~ 267 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRI 267 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCch
Confidence 888899999999999999999 66666677777777777765 999999999999888877777777999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchh-hHHHHHHHHH
Q 014820 212 AEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSK-LARTTILLWL 290 (418)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~ 290 (418)
+++.+..++..+.|+............. ..++......++...+.++++.+ .++..+...+
T Consensus 268 ~~a~~~l~~~a~~n~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~ 329 (521)
T KOG0255|consen 268 DEAIKILKKIAKLNGRKLSVKELLRLEL------------------LLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLF 329 (521)
T ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHHH------------------HhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHH
Confidence 9999998888776622211111000000 00001111122234577777755 7788888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHH
Q 014820 291 LLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSC 370 (418)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~ 370 (418)
.++.....+|+.......+. .+.+......+.....+....+...|+.|||..+..+..+..
T Consensus 330 ~~~~~~~~y~gl~~~~~~lg------------------~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~ 391 (521)
T KOG0255|consen 330 IWFVFSLVYYGLSLNVSGLG------------------GNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAG 391 (521)
T ss_pred HHHHHhHHHHhhhhhhhhcC------------------chHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 88889999999887777543 455566666667888888899999999999999999999999
Q ss_pred HHHHHHHhhchh---HHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 371 LFLLPLVTYQSN---ILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 371 ~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
++++...+.... +..++...+..++.+..+.+.+.+.+|++|+..|.
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~ 441 (521)
T KOG0255|consen 392 IGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN 441 (521)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 998888873322 24666667777778888888899999999999885
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-28 Score=225.48 Aligned_cols=309 Identities=15% Similarity=0.041 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 014820 29 YAGLGWVAEAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS 107 (418)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 107 (418)
.+.++.+..........+.+|. +.+++|.|.++.|++.+++.+++.++++++|+++||+|||++++.+.++.+++.+..
T Consensus 19 ~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~ 98 (392)
T PRK12382 19 RIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAY 98 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 3334455555556666667775 578999999999999999999999999999999999999999999888777655432
Q ss_pred ---h-----hhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchH
Q 014820 108 ---S-----FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 178 (418)
Q Consensus 108 ---~-----~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~ 178 (418)
. ..++++.+++.|++.|++.+.. +...+++.|+.|+++|++++++.+.+..+|..++|++++.+.+.+|||
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~ 178 (392)
T PRK12382 99 LLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFA 178 (392)
T ss_pred HhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChH
Confidence 1 1358899999999999999887 677788999999999999999999999999999999999998889999
Q ss_pred HHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccC
Q 014820 179 WLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSN 258 (418)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (418)
..+.+..+..++........||.++ + ++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~--------------------------------------------- 206 (392)
T PRK12382 179 ALALTTMVLPLLAWAFNGTVRKVPA------H-AG--------------------------------------------- 206 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCC------C-cc---------------------------------------------
Confidence 8766544433322222111121100 0 00
Q ss_pred CCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHH
Q 014820 259 GGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFIT 338 (418)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (418)
+ ++ +.++..+........ .+.....+.....+.+.+..+. +.+ ..+......
T Consensus 207 ------~-~~---~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~-----------~~~--~~~~~~~~~ 258 (392)
T PRK12382 207 ------E-RP---SLWSVVGLIWKPGLG-----LALQGVGFAVIGTFVSLYFASK-----------GWA--MAGFTLTAF 258 (392)
T ss_pred ------c-Cc---hHHHHHHHHHHhHHH-----HHHHHHHHhHHHHHHHHHHHhc-----------CCc--hhHHHHHHH
Confidence 0 00 111111110001111 1112223333444455554322 222 233445556
Q ss_pred HhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 339 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 339 ~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
+++.+++.++.|++.||+++|+.+..+..+.+++.+.+....+.+...+..++.+++.+...+.......|.+|++.|+
T Consensus 259 ~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g 337 (392)
T PRK12382 259 GGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRG 337 (392)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHH
Confidence 7778889999999999999999988888888887777666555555555666777777777788888888999998886
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-27 Score=221.65 Aligned_cols=321 Identities=11% Similarity=-0.005 Sum_probs=235.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHH
Q 014820 27 LAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLL 106 (418)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 106 (418)
+..++..++..++.....++..|.+++++|+|..+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l 84 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL 84 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 44555667777788888889999999999999999999999999999999999999999999999999999999999887
Q ss_pred Hhh---hhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC--------
Q 014820 107 SSF---SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR-------- 174 (418)
Q Consensus 107 ~~~---~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-------- 174 (418)
... .++++.+++.|++.|+|.|.. +...+++.+..|+++|++.+++.+...++|..+++.++..+...
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 644 468999999999999999998 78888999999999999999999999999999999998876421
Q ss_pred ------------------cchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccc
Q 014820 175 ------------------LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVA 236 (418)
Q Consensus 175 ------------------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (418)
.+||.+|++.+++.++..+...+.+. |+. ++ .++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~-p~~---~~-~~~~---------------------- 217 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKM-PAL---NH-SDAK---------------------- 217 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC---Cc-cccc----------------------
Confidence 36999998888776665444332221 110 00 0000
Q ss_pred cCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 014820 237 RRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRC 316 (418)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (418)
+.+...+.+++++++..+. .....+.......+...+.+.+..+.+
T Consensus 218 -----------------------------~~~~~~~~~~~~~~~~~~~---~~l~~f~yvg~e~~~~s~l~~y~~~~~-- 263 (410)
T TIGR00885 218 -----------------------------QISFSASLSRLARIRHYRE---GVIAQFFYVGVQIMCWTFIIQYAVRLI-- 263 (410)
T ss_pred -----------------------------cccchhhHHHHHhChhHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcc--
Confidence 0000112334444433222 333333334444455566777764321
Q ss_pred cCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 014820 317 RSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCV 396 (418)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 396 (418)
.+.+................+|+++++++.||+++|+.+.++..+.+++.++.....+. .......+.+++.
T Consensus 264 -------~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~-~~~~~l~~~glf~ 335 (410)
T TIGR00885 264 -------PGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGH-VGLYCLTLCSAFM 335 (410)
T ss_pred -------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHH
Confidence 12222322333444446678999999999999999999888888888887777775543 3355667777888
Q ss_pred HhhhHhHhhhhccccccccc
Q 014820 397 MGAFTVSLIYAAEVKLMTLF 416 (418)
Q Consensus 397 ~~~~~~~~~~~~e~~p~~~R 416 (418)
+..+|..++...+..+++.+
T Consensus 336 s~~fp~i~sl~~~~~g~~~~ 355 (410)
T TIGR00885 336 SLMFPTIYGIALKGLGQDTK 355 (410)
T ss_pred HHHHHHHHHHHHhhhhhhhh
Confidence 88999999999999988765
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-27 Score=226.45 Aligned_cols=362 Identities=14% Similarity=0.055 Sum_probs=243.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHH
Q 014820 26 VLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL 105 (418)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 105 (418)
.++.++++.+....+...+++..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 90 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL 90 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 34555667778888888888999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHh
Q 014820 106 LSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLS 184 (418)
Q Consensus 106 ~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~ 184 (418)
++.++++++.+++.|++.|++.+.. +....++.|++|+++|+++.++.....++|..++|.+++.+.++.+||+.|.+.
T Consensus 91 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~ 170 (471)
T PRK10504 91 FCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN 170 (471)
T ss_pred HHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence 8889999999999999999999988 777889999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHH-HhhccCchhHHHhhcChHHHHHHHH---H---HHHhcCCCCCCCcccccCCCCCCCCCCCccchhhc--
Q 014820 185 SIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALE---K---IAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLL-- 255 (418)
Q Consensus 185 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 255 (418)
.....+..+. ....|+.+. .+.+.+....... . ....++.+.. .. ..........
T Consensus 171 ~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------~~~~~~~~~~~~ 234 (471)
T PRK10504 171 IPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGL-GL------------SPLAIAGLVAVG 234 (471)
T ss_pred HHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcC-Cc------------chHHHHHHHHHH
Confidence 7766655443 333444322 1111111111000 0 0000000000 00 0000000000
Q ss_pred ---ccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHH
Q 014820 256 ---SSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLY 332 (418)
Q Consensus 256 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (418)
-.....++++.+++..+. ++++++..+..+...+ .....+.....+.|.|.+.. .+.++...+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~g 300 (471)
T PRK10504 235 VVALLLYLLHARNNNRALFSL-KLFRTRTFSLGLAGSF---AGRIGSGMLPFMTPVFLQIG----------LGFSPFHAG 300 (471)
T ss_pred HHHHHHHHHHHhcCCCCccCH-HHhcccchHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----------cCCCHHHHH
Confidence 000000000000111122 2455443333332222 22222333333444444221 257777888
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh---chhHHHHHHHHHHHHHHHhhhHhHhhhhcc
Q 014820 333 IDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY---QSNILTTGLLFGARMCVMGAFTVSLIYAAE 409 (418)
Q Consensus 333 ~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 409 (418)
+......++.+++.++.+++.||+|||+.+..+..+.++..+++.+. ...+......++.+++.+...+..+.+..+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 380 (471)
T PRK10504 301 LMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLK 380 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888999999999999999988888777776655542 222222334455566777777888888889
Q ss_pred cccccccc
Q 014820 410 VKLMTLFT 417 (418)
Q Consensus 410 ~~p~~~R~ 417 (418)
.+|++.|+
T Consensus 381 ~~~~~~~g 388 (471)
T PRK10504 381 DLPDNLAS 388 (471)
T ss_pred cCCHHhcc
Confidence 99988876
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=231.72 Aligned_cols=182 Identities=20% Similarity=0.231 Sum_probs=168.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHH
Q 014820 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV 99 (418)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 99 (418)
.+..++.+.++++.++.++.+++.+....+.+++.+|++++..|++.+.+.+.+.+++|++|+++||+.||+++.+|..+
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i 107 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI 107 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence 34566777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc-h
Q 014820 100 TAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-W 177 (418)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w 177 (418)
+.++.++++++..+|++.++|.+.|+|.+.. +++.++++|.+|.++|++++++++.+..+|..+|.+.+..+.+..+ |
T Consensus 108 W~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W 187 (493)
T KOG1330|consen 108 WTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW 187 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence 9999999999999999999999999999998 9999999999999999999999999999999999999999887655 9
Q ss_pred HHHHHHhHHHHHHHHHHHhh-ccCc
Q 014820 178 RWLLGLSSIPSFILLAFLGF-QPES 201 (418)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~-~~~~ 201 (418)
|+.|...+++++++.++.++ .+|.
T Consensus 188 r~af~~~avl~vi~~~L~~~f~~eP 212 (493)
T KOG1330|consen 188 RWAFRGSAVLGVIVGLLVFLFVREP 212 (493)
T ss_pred EEEEEeehHHHHHHHHHHHhhccCc
Confidence 99999999999998665544 4543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-26 Score=218.54 Aligned_cols=310 Identities=13% Similarity=0.108 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhH
Q 014820 34 WVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNY 113 (418)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 113 (418)
..........+.+..|.+.+++|.++++.+++.+++.+++.++++++|+++||+|||+.+..+.++.+++.++..+++++
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 94 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESA 94 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence 33444555667777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHH
Q 014820 114 ITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL 192 (418)
Q Consensus 114 ~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~ 192 (418)
+.+++.|++.|++.+.. +...+.+.|++|++++++..+.......+|..++|.+++++.++.+||..|++.+++.++..
T Consensus 95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~ 174 (401)
T PRK11043 95 AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLI 174 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 99999999999998877 66667889999999999999999989999999999999999998999999998887777765
Q ss_pred HHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhH
Q 014820 193 AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSL 272 (418)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (418)
+..++++|+++. ++.+ +...+
T Consensus 175 ~~~~~~~~~~~~----~~~~-------------------------------------------------------~~~~~ 195 (401)
T PRK11043 175 LPTLRLKPSKKA----RKQS-------------------------------------------------------QDALT 195 (401)
T ss_pred HHHHHcCCCCCc----cccc-------------------------------------------------------hHHHH
Confidence 555555544210 0000 01123
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHH
Q 014820 273 FLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAIL 352 (418)
Q Consensus 273 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l 352 (418)
++++++++..+... +........++....+.|.+.++. +.+..+.+.......++.++|.+..+++
T Consensus 196 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~-----------g~s~~~~g~~~~~~~~~~~~g~~~~~~l 261 (401)
T PRK11043 196 FKQLLKSKTYLGNV---LIFAACSAAFFAWLTGSPFILEQM-----------GYSPADIGLSYVPQTIAFLVGGYGCRAA 261 (401)
T ss_pred HHHHHcChhHHHHH---HHHHHHHHHHHHHHHHhHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455443222221 122222333344445566655332 4777777777777778888999999999
Q ss_pred HhhhchhHHHHHHHHHHHHHHHHH---Hh--hchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 353 VDTAGRKLSITIMFTLSCLFLLPL---VT--YQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 353 ~d~~grr~~l~~~~~~~~~~~~~l---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
.||+++|+.........+++.+.+ .. ..+.+.......+.+++.+..++.......|..|+ .|+
T Consensus 262 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g 330 (401)
T PRK11043 262 LQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-ATG 330 (401)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-cCh
Confidence 999999887655554444433322 22 22333333445556677777778888887787775 444
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-27 Score=222.42 Aligned_cols=317 Identities=17% Similarity=0.188 Sum_probs=224.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhcC--CCcchhHHHHHH-----HHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 014820 35 VAEAMEIMILSFVGPTVKSEWN--LSSTEESLITTS-----VFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS 107 (418)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~s~-----~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 107 (418)
+.++++++.+++..+.+.+++. .++++.+.+.+. ..++..+++++.|+++||+|||+++..+.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888877754 445666665443 333345789999999999999999999999999999999
Q ss_pred hhhhhHH--------HHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh------
Q 014820 108 SFSPNYI--------TLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM------ 172 (418)
Q Consensus 108 ~~~~~~~--------~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------ 172 (418)
.++++++ .+++.|+++|++.+.. +....++.|++|+++|++..++.+.+..+|..+++.++..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9988875 4788999999999887 777889999999999999999999999999999998876653
Q ss_pred --cCcchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCcc
Q 014820 173 --PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPE 250 (418)
Q Consensus 173 --~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (418)
+.++||..|.+.+++.++........+|+++....++ +++
T Consensus 163 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~---------------------- 204 (394)
T TIGR00883 163 ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE----------------KHK---------------------- 204 (394)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh----------------ccc----------------------
Confidence 3579999998877666555544445566543210000 000
Q ss_pred chhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChh
Q 014820 251 LVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDAN 330 (418)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (418)
+...+.++.++++. +..+......+.....++....+.|.+..+. .+.++.+
T Consensus 205 -----------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~ 256 (394)
T TIGR00883 205 -----------------KKRGPIRETLTKHR-KPFLLGLGLVIATTTTFYLITTYLPTYLTQT----------LGLSANS 256 (394)
T ss_pred -----------------cccCCHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCChhH
Confidence 00012333333322 2244444445555566666677777776332 2466677
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHH-HHH-Hh--hchhHHHHHHHHHHHHHHHhhhHhHhhh
Q 014820 331 LYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFL-LPL-VT--YQSNILTTGLLFGARMCVMGAFTVSLIY 406 (418)
Q Consensus 331 ~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~-~~l-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (418)
.+.......+..+++.++.|++.||+|||+.+..+..+..+.. ..+ .. ..+.+......++.+++.+...+..+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 336 (394)
T TIGR00883 257 ALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSF 336 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 7777778888999999999999999999998775554443322 222 22 2334444455566677777788889999
Q ss_pred hcccccccccc
Q 014820 407 AAEVKLMTLFT 417 (418)
Q Consensus 407 ~~e~~p~~~R~ 417 (418)
..|.+|++.|+
T Consensus 337 ~~~~~p~~~~~ 347 (394)
T TIGR00883 337 LPELFPTEVRY 347 (394)
T ss_pred HHHhCCcccee
Confidence 99999999886
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-26 Score=217.84 Aligned_cols=310 Identities=15% Similarity=0.066 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhH
Q 014820 34 WVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNY 113 (418)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 113 (418)
.+..........+..|.+.+++|.|..+.++..+.+.++..+++++.|+++||+|||+.++.+.++.+++.+++..++++
T Consensus 12 ~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~ 91 (392)
T PRK10473 12 VLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETS 91 (392)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcH
Confidence 33344444555577899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHH
Q 014820 114 ITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL 192 (418)
Q Consensus 114 ~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~ 192 (418)
+.+++.|++.|++.+.. +...+++.|++|+++|+++.++.+....+|..++|.+++.+.+..+||+.|++.++..++..
T Consensus 92 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~ 171 (392)
T PRK10473 92 SLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVL 171 (392)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHH
Confidence 99999999999999887 77788999999999999999999999999999999999988888899999998887766654
Q ss_pred H-HHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhh
Q 014820 193 A-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLS 271 (418)
Q Consensus 193 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (418)
+ ....++|+++. +++.+ ++...
T Consensus 172 ~~~~~~~~~~~~~---~~~~~------------------------------------------------------~~~~~ 194 (392)
T PRK10473 172 LLSLFILKETRPA---RAPAA------------------------------------------------------SSKPR 194 (392)
T ss_pred HHHHHHcCCCCCc---ccCCc------------------------------------------------------cchHH
Confidence 4 34455654320 00000 00001
Q ss_pred HHHHhhchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHH
Q 014820 272 LFLMLFSSK-LARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAA 350 (418)
Q Consensus 272 ~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g 350 (418)
..++.++++ .+............ ......+.|.+..+ ..+.++.+.+......+++.+++.++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~i~~~~~~~ 260 (392)
T PRK10473 195 ENSESLLNRFFLSRLVITTLSVTV----ILTFVNTSPVLLME----------QMGFSRGEYAIIMALTAGVSMTVSFSTP 260 (392)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHH----HHHHHHhCHHHHHH----------HcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233332 22222221111111 11112223333321 1246667777777788899999999999
Q ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhccccccccc
Q 014820 351 ILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLF 416 (418)
Q Consensus 351 ~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R 416 (418)
++.||+|||+.+..+..+..++.+.+......+.......+.+.+.+...+.. ...+..|.+.|
T Consensus 261 ~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~ 324 (392)
T PRK10473 261 FALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVA--MSQALGPFSLR 324 (392)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHhccCccc
Confidence 99999999999988888777777766664444333333333333333333332 33445555544
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=219.32 Aligned_cols=309 Identities=15% Similarity=0.112 Sum_probs=218.6
Q ss_pred HHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 014820 41 IMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLR 120 (418)
Q Consensus 41 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 120 (418)
...+.+..|.+.+++|+|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|
T Consensus 7 ~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 86 (377)
T PRK11102 7 IDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMR 86 (377)
T ss_pred HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHH-HHhhc
Q 014820 121 CLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQ 198 (418)
Q Consensus 121 ~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~-~~~~~ 198 (418)
++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+||+.|++.+++.++..+ ..++.
T Consensus 87 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (377)
T PRK11102 87 FLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFI 166 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999887 777889999999999999999999999999999999999998888999999888777766543 34455
Q ss_pred cCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhc
Q 014820 199 PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS 278 (418)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 278 (418)
||+++.. ++.+ .+.++...++++.++
T Consensus 167 ~~~~~~~---~~~~---------------------------------------------------~~~~~~~~~~~~~~~ 192 (377)
T PRK11102 167 PETLPKE---RRQP---------------------------------------------------FHLRTTIRNFASLFR 192 (377)
T ss_pred CccCccc---ccCC---------------------------------------------------CChHHHHHHHHHHHc
Confidence 6543200 0000 000011123444554
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhch
Q 014820 279 SKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR 358 (418)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~gr 358 (418)
++... ...+..+......+....+.|.+..+. .+.++.+.+.......++.+++.++.+++.||+||
T Consensus 193 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~ 259 (377)
T PRK11102 193 HKRVL---GYMLASGFSFAGMFSFLTAGPFVYIEL----------NGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGA 259 (377)
T ss_pred ChHHH---HHHHHHHHHHHHHHHHHHcCHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 43222 222222222222333333334333221 25777888888888889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHH---h-hchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 359 KLSITIMFTLSCLFLLPLV---T-YQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 359 r~~l~~~~~~~~~~~~~l~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
|+.+..+..+..+..+.+. . ..+.+...+...+.+...+...+.......|..| +.|+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g 321 (377)
T PRK11102 260 LNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAG 321 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccch
Confidence 9998887765444332222 1 1222222223333333334444455566677777 4443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=218.58 Aligned_cols=295 Identities=26% Similarity=0.325 Sum_probs=250.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhh
Q 014820 30 AGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF 109 (418)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 109 (418)
+.+..+....+.....+..|.+.+++|.+..+.+++.+...++..+++++.|+++||+|||+.+..+.++..++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~ 83 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF 83 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence 34556677777788888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHH
Q 014820 110 SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPS 188 (418)
Q Consensus 110 ~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~ 188 (418)
.++++.+++.|++.|++.+.. +...+++.|++|+++|++.+++.+.+..+|..+++.+++.+.+..+||+.+++.++..
T Consensus 84 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (352)
T cd06174 84 ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG 163 (352)
T ss_pred hccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999988 7788899999999999999999999999999999999999998889999999888777
Q ss_pred HHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccc
Q 014820 189 FILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKS 268 (418)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (418)
++..+...+++
T Consensus 164 ~~~~~~~~~~~--------------------------------------------------------------------- 174 (352)
T cd06174 164 LLLALLLLFLL--------------------------------------------------------------------- 174 (352)
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 76655443332
Q ss_pred hhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHH
Q 014820 269 GLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLL 348 (418)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 348 (418)
+..+......+...........+.+.+..+. .+.++.+.+.......++.+++.++
T Consensus 175 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~~~~ 230 (352)
T cd06174 175 --------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEV----------LGLSAAEAGLLLSLFGLGGILGALL 230 (352)
T ss_pred --------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1122333344444455555556666666432 1467788888888999999999999
Q ss_pred HHHHHhhhchhH-HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 349 AAILVDTAGRKL-SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 349 ~g~l~d~~grr~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
.+++.||++||+ .+..+..+..++.+.+....+.+...+..++.+++.+...+....+..|..|++.|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
T cd06174 231 GGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARG 300 (352)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHH
Confidence 999999999999 989999998888888887766667777888888888989999999999999998886
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=219.28 Aligned_cols=312 Identities=14% Similarity=0.048 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHH-HHHHHHHHHHHHhhh
Q 014820 33 GWVAEAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLG-EALVTAGAGLLSSFS 110 (418)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~~~~~~~~~~ 110 (418)
.++..+.......+.+|. +.+++|.|..+.|++.+.+.++..+.+++.|+++||+||||.++. +.++.+++.++++++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 84 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN 84 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence 355566666666776765 568899999999999999999999999999999999999987654 566666777788889
Q ss_pred hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhH--HHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHH
Q 014820 111 PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMW--MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187 (418)
Q Consensus 111 ~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~ 187 (418)
++++.+++.|++.|.+.+.. +...++..|+.|+++|+++ .+....+.++|.+++|++++.+.+..+||+.|++.+++
T Consensus 85 ~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~ 164 (375)
T TIGR00899 85 RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALA 164 (375)
T ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHH
Confidence 99999999999988777666 6667788898888777755 57888888999999999999999889999999998887
Q ss_pred HHHHHHH-HhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccc
Q 014820 188 SFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEG 266 (418)
Q Consensus 188 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (418)
.++..+. .+++||.|+.. +.++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~----~~~~~---------------------------------------------------- 188 (375)
T TIGR00899 165 FVLCGVLVWLFLPSYPRGA----PGALT---------------------------------------------------- 188 (375)
T ss_pred HHHHHHHHHHhCCCcccCc----ccccC----------------------------------------------------
Confidence 6665444 44577754310 00000
Q ss_pred cchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHH
Q 014820 267 KSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGL 346 (418)
Q Consensus 267 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 346 (418)
..+.++.++++..+......+... ........+.|.+..+. .+.++.+.+.......+..+++.
T Consensus 189 ---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~g~~~~~~g~~~~~~~~~~~~~~ 252 (375)
T TIGR00899 189 ---RLEVRGLLASRDTRLLFVACTLMW---GCNILYIINMPLLIIHE----------LGLPDKLAGLMMGTAAGLEIPFM 252 (375)
T ss_pred ---cchhhhhhcCcchHHHHHHHHHHH---HHHHHHHhhhHHHHHHH----------cCCCHHHHHHHHHHHHHHHHHHH
Confidence 001111222222222222221111 11222223344443221 24666666666666666778888
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhccccccccc
Q 014820 347 LLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLF 416 (418)
Q Consensus 347 ~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R 416 (418)
++.|++.||++||+.+..+..+..+....+...++.+......++.+++.+...+....+..|..|++.+
T Consensus 253 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 322 (375)
T TIGR00899 253 LLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRAG 322 (375)
T ss_pred HhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh
Confidence 9999999999999988887776666555555555555555556666777777778888889999987643
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=219.41 Aligned_cols=319 Identities=14% Similarity=0.089 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcch-----hHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHH
Q 014820 29 YAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTE-----ESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGA 103 (418)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 103 (418)
..+++.+..........+.+|.+.+++|++..+ .|++.+.+.++..+++++.|+++||+|||+++..+.++.+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 97 (408)
T PRK09874 18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV 97 (408)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence 344556666777777888899999999998765 388999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHH
Q 014820 104 GLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGL 183 (418)
Q Consensus 104 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~ 183 (418)
.++..++++++.+++.|++.|++.+..+....++.+++|+++|+++.++...+..+|..++|.+++.+.+..+||..|++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 177 (408)
T PRK09874 98 MVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI 177 (408)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 99888999999999999999998665566677888999999999999999999999999999999999888999999998
Q ss_pred hHHHHHHHHHH-HhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCC
Q 014820 184 SSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNK 262 (418)
Q Consensus 184 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (418)
.++..++..+. .++++|+++.. ++ ++..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~---------------------------------------------- 207 (408)
T PRK09874 178 TASVLFLCFLVTLFCIRENFQPV---SK-KEMLH---------------------------------------------- 207 (408)
T ss_pred HHHHHHHHHHHHHHHhccCcccc---cc-hhhhH----------------------------------------------
Confidence 88776665443 44455542110 00 00000
Q ss_pred cccccchhhHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCCh---hHHHHHHHH
Q 014820 263 TTEGKSGLSLFLMLFS-SKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA---NLYIDEFIT 338 (418)
Q Consensus 263 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 338 (418)
..+..+.++ ++.+....... +...........+.+.+..+.. +.... ..+....+.
T Consensus 208 -------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~g~~~~~~ 267 (408)
T PRK09874 208 -------MREVVTSLKNPKLVLSLFVTT---LIIQVATGSIAPILTLYVRELA----------GNVSNIAFISGMIASVP 267 (408)
T ss_pred -------HHHHHHhCcCCchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh----------ccchHHHHHHHHHHHHH
Confidence 001111122 21111111111 1111122222233343332211 11111 123344455
Q ss_pred HhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 339 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 339 ~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
+++.+++.+..|++.||++||+.+..+..+.+++.+.+....+.+...+..++.+++.+...+...++..+..|++.|+
T Consensus 268 ~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 346 (408)
T PRK09874 268 GVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAG 346 (408)
T ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccce
Confidence 6777888899999999999999998888877777766665555555566667778888888888888888888888775
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=217.15 Aligned_cols=316 Identities=13% Similarity=-0.026 Sum_probs=221.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhh
Q 014820 31 GLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS 110 (418)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 110 (418)
+++.+.............+.+.++++.+..+.+++.+.+.+++.+.++++|+++||+|||++++.+.++.+++.+.+.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~ 88 (393)
T PRK11195 9 MAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG 88 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH
Confidence 34455555544444555566678999999999999999999999999999999999999999999999999888877776
Q ss_pred hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHH
Q 014820 111 PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSF 189 (418)
Q Consensus 111 ~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~ 189 (418)
.+. ++.|+++|++.+.. ++..+++.|++|+++|++++++.+....+|.++||.+++++.+. .|+..+.+.+...+
T Consensus 89 ~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~ 164 (393)
T PRK11195 89 IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL 164 (393)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 664 77899999999998 88889999999999999999999999999999999999999874 47777766665544
Q ss_pred HHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccch
Q 014820 190 ILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSG 269 (418)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (418)
+..+....+||+|+....+ +.++ ....+ +.
T Consensus 165 ~~~~~~~~l~~~~~~~~~~-~~~~-~~~~~------------------------------------------------~~ 194 (393)
T PRK11195 165 LAALFNLFIPRLGARRPGQ-SWNP-IALLR------------------------------------------------DF 194 (393)
T ss_pred HHHHHHhcCCCCccccccc-CCCH-HHHHH------------------------------------------------HH
Confidence 4445556677654311000 0000 00000 00
Q ss_pred hhHHHHhhchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHH
Q 014820 270 LSLFLMLFSSKLARTTILL-WLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLL 348 (418)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 348 (418)
...++.+++++..+..... .+.++......+....|.+... +.++.+.+......+++.+++.+.
T Consensus 195 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------------g~s~~~~G~~~~~~~~g~i~g~~~ 260 (393)
T PRK11195 195 FHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVAL--------------GITLNQPAYLQAVVAIGIAVGAGA 260 (393)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------------CCChhHHHHHHHHHHHHHHHHHHH
Confidence 1123445554443333222 2223333333344444555444 577888888889999999999999
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccc
Q 014820 349 AAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTL 415 (418)
Q Consensus 349 ~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 415 (418)
.+++.||.++++.+..+. +.++..+.+.+.++.+......++.|++.+...+...+...|..|++.
T Consensus 261 ~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~ 326 (393)
T PRK11195 261 AARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV 326 (393)
T ss_pred HHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc
Confidence 999999998888777664 334444444444444445555666777766666667777778766654
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=225.07 Aligned_cols=316 Identities=18% Similarity=0.058 Sum_probs=232.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhh----
Q 014820 34 WVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF---- 109 (418)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---- 109 (418)
.+..........+..|.+.++++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+....
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~ 105 (417)
T PRK10489 26 RFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL 105 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc
Confidence 3344445566677788888899889999999999999999999999999999999999998888777776654432
Q ss_pred -hhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHH
Q 014820 110 -SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187 (418)
Q Consensus 110 -~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~ 187 (418)
.++++.+++.|++.|++.+.. +...+++.|+.|+++|+++.++...+.++|..++|.+++.+.+..+|++.|.+.++.
T Consensus 106 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~ 185 (417)
T PRK10489 106 PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAG 185 (417)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 567889999999999998877 677788999999999999999999999999999999999998888999999887776
Q ss_pred HHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCccccc
Q 014820 188 SFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGK 267 (418)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (418)
.++..+..+.+|++++. +++.++ ..+
T Consensus 186 ~~~~~~~~~~l~~~~~~---~~~~~~---------------------------------------------------~~~ 211 (417)
T PRK10489 186 TFITLLPLLRLPALPPP---PQPREH---------------------------------------------------PLR 211 (417)
T ss_pred HHHHHHHHHhCCCCCCC---Cccccc---------------------------------------------------chH
Confidence 66665555566654321 000000 000
Q ss_pred chhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHH
Q 014820 268 SGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLL 347 (418)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 347 (418)
+....++.+++++..+...+...... ...+...+.|.+..+. .+.++...+......+++.+++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~----------~g~~~~~~g~~~~~~~~g~~ig~~ 277 (417)
T PRK10489 212 SLLAGFRFLLASPVVGGIALLGGLLT----MASAVRVLYPALADEV----------WQMGAAQIGLLYAAVPLGAALGAL 277 (417)
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHH----HHHhHHHhhHHHHHhc----------cCCChhHhHHHHHHHHHHHHHHHH
Confidence 11123444555443333322222111 1234455667666432 256777778888888899999999
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 348 LAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 348 ~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
+.+++.||.++++.+..+..+.+++.+.+.+.++.+...+..++.+++.+...+...++..|..|++.||
T Consensus 278 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g 347 (417)
T PRK10489 278 TSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLG 347 (417)
T ss_pred HHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH
Confidence 9999999988787888888777777776666555555555666677766666677788999999998886
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=217.02 Aligned_cols=311 Identities=15% Similarity=0.121 Sum_probs=219.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHH
Q 014820 27 LAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLL 106 (418)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 106 (418)
+..+.++.+..........+..|.+.+++|.|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~ 87 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG 87 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhH
Q 014820 107 SSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS 185 (418)
Q Consensus 107 ~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~ 185 (418)
+++++|++.++++|++.|++.+.. +...+.+.+..++++|+++++.+..+..+|..+++.+++.+.+...|...+.. +
T Consensus 88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~-~ 166 (381)
T PRK03633 88 LGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVT-G 166 (381)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHH-H
Confidence 999999999999999999999887 66677778889999999999999999999999999999988765433333322 2
Q ss_pred HHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCccc
Q 014820 186 IPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTE 265 (418)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (418)
......... .+.+.+++ +++ + +
T Consensus 167 ~~~~~~~~~-~~~~~~~~----~~~---------------~-----------------------------------~--- 188 (381)
T PRK03633 167 LVLAAILPL-LFTRILNQ----QAE---------------N-----------------------------------H--- 188 (381)
T ss_pred HHHHHHHHH-HHhcccCC----CCC---------------C-----------------------------------C---
Confidence 221111111 11111110 000 0 0
Q ss_pred ccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHH
Q 014820 266 GKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG 345 (418)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 345 (418)
+..+.++.++++..+..... .+.....+.....+.|.+..+. +.+....+.......++.+++
T Consensus 189 ---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~lp~~~~~~-----------g~s~~~~g~~~~~~~~~~~~~ 251 (381)
T PRK03633 189 ---DSTSIWPMLKLRQARLGVNG---CIISGIVLGSLYGLMPLYLNHQ-----------GMSDASIGFWMALLVSAGILG 251 (381)
T ss_pred ---CCCCHHHHHHhcchHHHHHH---HHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHH
Confidence 00012233333322222111 1112222233334566666432 466667777777888899999
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhccccccccc
Q 014820 346 LLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLF 416 (418)
Q Consensus 346 ~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R 416 (418)
++..|++.||+++|+.+..+..+.+++.+.+.. . ........+.+++.....|...+.+.|..|++.+
T Consensus 252 ~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~--~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~ 319 (381)
T PRK03633 252 QWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS--Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHEL 319 (381)
T ss_pred HhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh--h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHH
Confidence 999999999999999988887777766554431 1 1222334445555556678888888898887643
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=214.59 Aligned_cols=309 Identities=14% Similarity=0.092 Sum_probs=224.3
Q ss_pred HHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhh-----cchHHH-HHHHHHHHHHHHHHhhh---hh
Q 014820 42 MILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY-----GRRMGF-LGEALVTAGAGLLSSFS---PN 112 (418)
Q Consensus 42 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~~-~~~~~~~~~~~~~~~~~---~~ 112 (418)
...++..|.+.+|+|+|.++.|+.... .+...+ .+++|+++||+ ||||.+ +.+.++.++.....++. .+
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 456677899999999999999999755 445554 99999999998 899974 56777777776666666 45
Q ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc--------hHHHHHH
Q 014820 113 YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD--------WRWLLGL 183 (418)
Q Consensus 113 ~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--------w~~~~~~ 183 (418)
.+.+....++.+++.+.. ++..+++.|++|+++|+++.++...+..+|.++++.++..+.+..+ ||.+|++
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i 162 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW 162 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence 666777777888877777 7778899999999999999999999999999999999998887777 9999998
Q ss_pred hHHHHHHHHHHHhh-ccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCC
Q 014820 184 SSIPSFILLAFLGF-QPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNK 262 (418)
Q Consensus 184 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (418)
.++..++..+..++ .+|+++. +++.++..
T Consensus 163 ~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~----------------------------------------------- 192 (356)
T TIGR00901 163 TALLILPGLLVTLFLAKEPQED---ASVPKPLT----------------------------------------------- 192 (356)
T ss_pred HHHHHHHHHHHHHHhccCCCcc---cccchhHH-----------------------------------------------
Confidence 88876665544443 4543210 00000000
Q ss_pred cccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHH-hh
Q 014820 263 TTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITS-LA 341 (418)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 341 (418)
++.+..++++++++..+..+...+..+.....++....+.+.+..+. +.++.+.+......+ +.
T Consensus 193 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------g~~~~~~g~~~~~~~~~~ 257 (356)
T TIGR00901 193 ----QAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDM-----------GFSKEEIALVAKINGLLG 257 (356)
T ss_pred ----HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHhHHHHHHH
Confidence 00112455555554433444445555555666667777777776442 577777766666555 56
Q ss_pred hhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh-----------chhHHHHHHHHHHHHHHHhhhHhHhhhhccc
Q 014820 342 EIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-----------QSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410 (418)
Q Consensus 342 ~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 410 (418)
.+++.++++++.||+|||+.+..+.++.++....+.+. .+.+......++.+++.+...+...++..|.
T Consensus 258 ~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (356)
T TIGR00901 258 AILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKL 337 (356)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 78999999999999999999888887777665544432 2334455555666788888899999999999
Q ss_pred ccccccc
Q 014820 411 KLMTLFT 417 (418)
Q Consensus 411 ~p~~~R~ 417 (418)
+|+++||
T Consensus 338 ~p~~~~g 344 (356)
T TIGR00901 338 SNPKFGA 344 (356)
T ss_pred cCCCccH
Confidence 9999987
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-26 Score=214.16 Aligned_cols=307 Identities=14% Similarity=0.034 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhh
Q 014820 31 GLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS 110 (418)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 110 (418)
.+..+..........+.+|.+.+++|.+.++.++..+++.+++.+++++.|+++||+|||++++.+.++.+++.+++.++
T Consensus 22 ~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a 101 (413)
T PRK15403 22 ILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT 101 (413)
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc
Confidence 44445566777788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHH
Q 014820 111 PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSF 189 (418)
Q Consensus 111 ~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~ 189 (418)
+|++.++++|+++|++.+.. +....++.|++|+++|++++++...+..+|..++|++++.+.++.|||+.|++.++..+
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~ 181 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGL 181 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999998876 55567888999999999999999999999999999999999888899999999888777
Q ss_pred HHHHH-HhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccc
Q 014820 190 ILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKS 268 (418)
Q Consensus 190 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (418)
+..+. .+.+||+++. +++..+ .++
T Consensus 182 i~~~~~~~~lp~~~~~---~~~~~~----------------------------------------------------~~~ 206 (413)
T PRK15403 182 IAFVGLLLAMPETVKR---GAVPFS----------------------------------------------------AKS 206 (413)
T ss_pred HHHHHHHHhCCCCccc---cCCCCC----------------------------------------------------hHH
Confidence 66443 4456765320 000000 001
Q ss_pred hhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHH
Q 014820 269 GLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLL 348 (418)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 348 (418)
..++++.+++++ .++......+.....++....+.|.+..+. .+.++.+.++.......+.+++..+
T Consensus 207 ~~~~~~~ll~~~---~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~----------~g~s~~~~gl~~~~~~~~~~i~~~l 273 (413)
T PRK15403 207 VLRDFRNVFRNR---LFLTGAATLSLSYIPMMSWVAVSPVILIDA----------GGMTTSQFAWTQVPVFGAVIVANAI 273 (413)
T ss_pred HHHHHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHhChHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 123455566653 333333333444444555555667666433 2577777777776667777777777
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHH-----hhchhHHHHHHHHHHHHHHHhhhHhHhh
Q 014820 349 AAILVDTAGRKLSITIMFTLSCLFLLPLV-----TYQSNILTTGLLFGARMCVMGAFTVSLI 405 (418)
Q Consensus 349 ~g~l~d~~grr~~l~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (418)
.+.+.++..+++.......+..++.+++. .....+..+...++.+++.+...|....
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~ 335 (413)
T PRK15403 274 VARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFR 335 (413)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 77766544333332222222222222221 1222222344555566666666666653
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-26 Score=212.96 Aligned_cols=320 Identities=12% Similarity=0.021 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHH
Q 014820 23 QCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAG 102 (418)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~ 102 (418)
.++.+.+..+..+..........+..|.+.+++|.|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~ 85 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL 85 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence 44455555555556566667777888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHH
Q 014820 103 AGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLL 181 (418)
Q Consensus 103 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~ 181 (418)
+.++..++++++.+++.|++.|++.+.. +....+..|.+++++|+++.++.+.+..+|..++|.+++.+.+..+||+.|
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f 165 (394)
T PRK11652 86 GTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACY 165 (394)
T ss_pred HHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHH
Confidence 9999999999999999999999998877 666678889999999999999999999999999999999998889999999
Q ss_pred HHhHHHHHHHH-HHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCC
Q 014820 182 GLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGG 260 (418)
Q Consensus 182 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (418)
++.++..++.. +..++.||+++. ++.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----------------------------------------------- 194 (394)
T PRK11652 166 LFLLLLGAGVTFSMARWMPETRPA----DARRT----------------------------------------------- 194 (394)
T ss_pred HHHHHHHHHHHHHHHHhCCccCcc----ccchh-----------------------------------------------
Confidence 98877666553 344556665321 00000
Q ss_pred CCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHh
Q 014820 261 NKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSL 340 (418)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (418)
+....++..++++..+..+...+..+.....+ ..+.+.+..+ ..+.++.+.+.......+
T Consensus 195 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~ 254 (394)
T PRK11652 195 -------RVLASYRTLLSNRRFNCYLLMLIGTLAGIAVF---EACSGVLMGA----------VLGLSSMTVSILFILPIP 254 (394)
T ss_pred -------HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH---HHhChHHHHH----------HcCCCHHHHHHHHHHHHH
Confidence 01123444555443333333222222111111 1112222221 124666676776666677
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHH-HHHHHHHHHHHh--hchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccc
Q 014820 341 AEIPGLLLAAILVDTAGRKLSITIMF-TLSCLFLLPLVT--YQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLM 413 (418)
Q Consensus 341 ~~~~g~~~~g~l~d~~grr~~l~~~~-~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 413 (418)
+.+++..+.+++.||.+++....... ....+....... ..+.+.......+.+++.+...+....+..|.+|+
T Consensus 255 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 330 (394)
T PRK11652 255 AAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY 330 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 77788888888888887443332222 222222222222 22334445556667777777888888888898874
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-27 Score=217.83 Aligned_cols=275 Identities=23% Similarity=0.309 Sum_probs=223.7
Q ss_pred hhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhhhhh
Q 014820 53 SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSP--NYITLITLRCLVGVGLGSG 130 (418)
Q Consensus 53 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~ 130 (418)
.++++|.++.+++.+.++.|+.++++++|++.||+|.|+++..+.++.++++++...+. +++.+++.|+++|++.|..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence 46889999999999999999999999999999999999999999999999999988764 5567899999999999998
Q ss_pred -HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC-cchHHHHHHhHHHHHHHHHHHh-hccCchhHHHh
Q 014820 131 -HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR-LDWRWLLGLSSIPSFILLAFLG-FQPESPRYLCL 207 (418)
Q Consensus 131 -~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 207 (418)
++.....+.|.|+++|++..++..++..+|.+++.++++++.+. +||+.+|++.++.+++..++++ +..|+|.. .+
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~-h~ 224 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK-HP 224 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc-CC
Confidence 88888999999999999999999999999999999999999987 9999999999999999866654 45666652 11
Q ss_pred hcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHH
Q 014820 208 KGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTIL 287 (418)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 287 (418)
.-..+|.+ .+.+...+ +..+++...+++.+++. +.++.
T Consensus 225 ~is~~El~----~I~~~k~~-----------------------------------~~~~~~~~vP~~~i~ts---~~vwa 262 (466)
T KOG2532|consen 225 NISEKELK----YIEKGKSE-----------------------------------AHVKKKPPVPYKAILTS---PPVWA 262 (466)
T ss_pred CCCHHHHH----HHHhcccc-----------------------------------cccCCCCCCCHHHHHcC---HHHHH
Confidence 11112211 11110000 00001145689999988 66788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhch---------
Q 014820 288 LWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR--------- 358 (418)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~gr--------- 358 (418)
.++..++....++.+..+.|.|++++. +++..+.++...+..+...+..+++|.++||..+
T Consensus 263 i~~~~f~~~~~~~~l~~y~PtY~~~VL----------~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~r 332 (466)
T KOG2532|consen 263 IWISAFGGNWGFYLLLTYLPTYLKEVL----------GFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVR 332 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHh----------CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHH
Confidence 888889999999999999999997765 7888999999999999999999999999999744
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc
Q 014820 359 KLSITIMFTLSCLFLLPLVTYQ 380 (418)
Q Consensus 359 r~~l~~~~~~~~~~~~~l~~~~ 380 (418)
|..-.++....+++++.+.+..
T Consensus 333 kifn~i~~~~~ai~l~~l~~~~ 354 (466)
T KOG2532|consen 333 KIFNTIAFGGPAVFLLVLAFTS 354 (466)
T ss_pred HHHHhHHHHHHHHHHHeeeecC
Confidence 3444567777777777777643
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-26 Score=213.96 Aligned_cols=303 Identities=13% Similarity=0.000 Sum_probs=205.6
Q ss_pred hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHh---h-hhhHHHHHHHHH
Q 014820 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSS---F-SPNYITLITLRC 121 (418)
Q Consensus 46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~ 121 (418)
...+.+.+++|.|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+++. . .++++.+++.|+
T Consensus 34 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 113 (402)
T TIGR00897 34 GWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYG 113 (402)
T ss_pred HhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHH
Confidence 345556688999999999999999999999999999999999999999999999888876542 3 357888899999
Q ss_pred HHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHH-HHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHH-Hhhc
Q 014820 122 LVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGS-VSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQ 198 (418)
Q Consensus 122 l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~-~~~~ 198 (418)
+.|++.+.. +...+++.+++|+++|++++|+.+.+.++|. .++|.+++.+.+..||+..++......++..+. .++.
T Consensus 114 i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 193 (402)
T TIGR00897 114 IRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSN 193 (402)
T ss_pred HHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhcc
Confidence 999998877 6666788899999999999999999999997 578999988888888766655443333332222 2333
Q ss_pred cCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhc
Q 014820 199 PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS 278 (418)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 278 (418)
++.++.. +.+.++ +.++....++.+++
T Consensus 194 ~~~~~~~--~~~~~~---------------------------------------------------~~~~~~~~~~~~~~ 220 (402)
T TIGR00897 194 KDIFTPQ--HMQTRE---------------------------------------------------KFSELGKAATILFT 220 (402)
T ss_pred CCCCCcc--cccCCc---------------------------------------------------chhhHHHHHHHHHc
Confidence 3321100 000000 00001123445555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhch
Q 014820 279 SKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR 358 (418)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~gr 358 (418)
++ .++...+..++....+++...+.|.+.++. +.+..+.+.......++.+++.+..|+++||++|
T Consensus 221 ~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~ 286 (402)
T TIGR00897 221 NP---NVLLGGMVRIINTIGLFGFAVFLPMFVAEL-----------GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGW 286 (402)
T ss_pred Ch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 53 334444445556666777778888877543 4676777777777889999999999999999998
Q ss_pred hHHHH-HHHHHHHHHHHHHHh-----hchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 359 KLSIT-IMFTLSCLFLLPLVT-----YQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 359 r~~l~-~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
|+... .+....+++.+.+.. ..+.+...+..++.+++.+...+. .....|..| +.|+
T Consensus 287 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g 349 (402)
T TIGR00897 287 MNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKG 349 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhH
Confidence 87653 333333333222221 123334445556666666655443 455567655 4565
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-26 Score=214.16 Aligned_cols=315 Identities=11% Similarity=-0.013 Sum_probs=219.6
Q ss_pred HHHHHHHHHHHHHhhh-hhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhh
Q 014820 33 GWVAEAMEIMILSFVG-PTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSP 111 (418)
Q Consensus 33 ~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 111 (418)
..++.........+.+ +++.+++|+|..+.|++.+.+.+++.+++++.|+++||+|||++++++.++.+++.++..+++
T Consensus 15 ~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~ 94 (395)
T PRK10054 15 SSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555544 456678999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHH
Q 014820 112 NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFI 190 (418)
Q Consensus 112 ~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~ 190 (418)
+++.++++|++.|.+.+.. +....+..|..|+++|+++.++.....++|.+++|.+++++.+ .+|+.+|++.++..++
T Consensus 95 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i 173 (395)
T PRK10054 95 NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAF 173 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHH
Confidence 9999999999888877766 6777889999999999999999999999999999999998875 7999999988777666
Q ss_pred HHH-HHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccch
Q 014820 191 LLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSG 269 (418)
Q Consensus 191 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (418)
..+ ..+++||+++. ++.++ . +
T Consensus 174 ~~i~~~~~~~~~~~~----~~~~~-~-----------------------------------------------------~ 195 (395)
T PRK10054 174 PLVFIQIWVQRSEKA----IATET-G-----------------------------------------------------S 195 (395)
T ss_pred HHHHHHHHHhccccc----cccch-h-----------------------------------------------------h
Confidence 543 33445543210 00000 0 0
Q ss_pred hhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHH
Q 014820 270 LSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLA 349 (418)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 349 (418)
..+.++.++++..+ ......+.....+.....+.+.+.... ++.+.+....+......++..+......
T Consensus 196 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 264 (395)
T PRK10054 196 VWSPSVLLQDKALL---WFTCSGFLASFVSGAFASCISQYVMVV--------ADSDFAEKVVAVVLPVNAAMVVSLQYSV 264 (395)
T ss_pred hhhhhhhccCceeh---HHHHHHHHHHHHHHHhhhhHHHHHHHh--------cccchHHHHHHHHHHhhhhheeeehhHH
Confidence 00112333332222 222222222222222222223322110 1113444455556666666666667888
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 350 AILVDTAGRKLSITIMFTLSCLFLLPLVTY-QSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 350 g~l~d~~grr~~l~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
|++.||.++|+.+..+..+.++..+.+.+. .+.+...+...+.+++.....|.....+.+..|++.|+
T Consensus 265 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~ 333 (395)
T PRK10054 265 GRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKA 333 (395)
T ss_pred HHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccce
Confidence 999999999999888888777777666553 34444555666777777777788888999999998876
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-25 Score=208.58 Aligned_cols=300 Identities=12% Similarity=0.006 Sum_probs=213.7
Q ss_pred HHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 014820 44 LSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLV 123 (418)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 123 (418)
++...+++.+++|+|..+.|++.+...++..+.+++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.
T Consensus 30 ~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 109 (400)
T PRK11646 30 FPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILS 109 (400)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33344456789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHH-HHhhccCc
Q 014820 124 GVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPES 201 (418)
Q Consensus 124 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~ 201 (418)
|++.+.. +...+++.|++|+++|++++++......+|..++|.+++++. +++||+.|++.++..++..+ ..++.||.
T Consensus 110 g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 110 GLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9998877 777889999999999999999999999999999999999998 68999999988776665533 33344432
Q ss_pred hhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhh
Q 014820 202 PRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKL 281 (418)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 281 (418)
+. ++.++ +...+++++++++.
T Consensus 189 ~~-----~~~~~------------------------------------------------------~~~~~~~~~~~~~~ 209 (400)
T PRK11646 189 KL-----STVRT------------------------------------------------------PVREGMTRVLRDKR 209 (400)
T ss_pred cc-----cccch------------------------------------------------------hhHHHHHHHHcCch
Confidence 10 00000 00113444454432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHH-hhhchhH
Q 014820 282 ARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILV-DTAGRKL 360 (418)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~-d~~grr~ 360 (418)
... .....+.....+.....+.|.+.++.+ .++.+.+......++..+.+....++.. ||++.++
T Consensus 210 ~~~---~~~~~~~~~~~~~~~~~~~p~~~~~~~-----------~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~ 275 (400)
T PRK11646 210 FVT---YVLTLTGYYMLAVQVMLMLPIMVNDIA-----------GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEH 275 (400)
T ss_pred HHH---HHHHHHHHHHHHHHHHHhhhhhHHhhc-----------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 221 112222222222233455676664432 3455666666665665555544445555 4566666
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 361 SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 361 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
.+..+..+.+++.+.+...++.+...+...+.+.+.+...|...++..|..|++.||
T Consensus 276 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g 332 (400)
T PRK11646 276 RLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARG 332 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccch
Confidence 667777777777666665555544444555666666667788889999999999887
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=216.84 Aligned_cols=346 Identities=16% Similarity=0.228 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHH
Q 014820 22 YQCFVLAYAGLGWVAEAMEIMILSF-VGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVT 100 (418)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 100 (418)
..+.++..++..++....+...++. .+--+.++.++...+.+.+.++++++|+++.+++|.+.||++..+.+....+++
T Consensus 42 ~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w 121 (495)
T KOG2533|consen 42 LDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILW 121 (495)
T ss_pred HHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHH
Confidence 3445555556666666666655442 223356889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh------c
Q 014820 101 AGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM------P 173 (418)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------~ 173 (418)
++..++....+|++.+++.|++.|+.++.. |....+++.|+.+++|++.++++.+..++|+++|.+++..+. .
T Consensus 122 ~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~ 201 (495)
T KOG2533|consen 122 GLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG 201 (495)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence 888888888999999999999999999998 888889999999999999999999999999999999998863 3
Q ss_pred CcchHHHHHHhHHHHHHH-HHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccch
Q 014820 174 RLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELV 252 (418)
Q Consensus 174 ~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (418)
..|||+.|++.+++.++. ++.++++|+.|.... -.+.+|..-..++.++.+...
T Consensus 202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~-fl~~~ek~~~~~~~~~~~~~~------------------------ 256 (495)
T KOG2533|consen 202 LAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAW-FLTDEEKELVVERLRESPSGG------------------------ 256 (495)
T ss_pred cCCceeehhHHHHHHHHHHheEEEEecCChhhcc-ccchHHHHHHHHHHHhccCCC------------------------
Confidence 579999999999998887 455777899886220 011111111111111111100
Q ss_pred hhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHH
Q 014820 253 HLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLY 332 (418)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (418)
.+++.++.++++.++. +.++...++.++.....++...|.|.+.++. .+.+..++.
T Consensus 257 -----------~~~~~~~~~~~~a~~d---p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~----------~~~s~~~a~ 312 (495)
T KOG2533|consen 257 -----------IENKFKWKGFKEALKD---PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSN----------GGYSELQAN 312 (495)
T ss_pred -----------cccccCHHHHHHHHhc---hhHHHHHHHHHHHhhccccHHHHHHHHHHcC----------CCcChHHhc
Confidence 0001234455555555 6778888888888899999999999998652 258888888
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhh----hchhHHHHHHHHHHHH-HHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhh
Q 014820 333 IDEFITSLAEIPGLLLAAILVDT----AGRKLSITIMFTLSCL-FLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYA 407 (418)
Q Consensus 333 ~~~~~~~~~~~~g~~~~g~l~d~----~grr~~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (418)
.......++++++.+++|+++|| ..+|........+..+ +.+.+.............+....+.....++....+
T Consensus 313 ~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 392 (495)
T KOG2533|consen 313 LLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWT 392 (495)
T ss_pred cccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhc
Confidence 99999999999999999999999 5555555544444333 334444433233333333444444455555666666
Q ss_pred ccccccccc
Q 014820 408 AEVKLMTLF 416 (418)
Q Consensus 408 ~e~~p~~~R 416 (418)
++....+.|
T Consensus 393 s~~~~g~~k 401 (495)
T KOG2533|consen 393 SANLAGNTK 401 (495)
T ss_pred cccccchHH
Confidence 665554444
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-33 Score=266.19 Aligned_cols=350 Identities=27% Similarity=0.416 Sum_probs=244.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh--hhcCCCc---------chhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHH
Q 014820 31 GLGWVAEAMEIMILSFVGPTVK--SEWNLSS---------TEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV 99 (418)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~---------~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 99 (418)
.++.+..+++....+...+... .+++.+. .+.++..+...+|..+|++++|.++||+|||+.++++.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 3445667777766665554433 2222222 2468899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh---hHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC-
Q 014820 100 TAGAGLLSSFSP---NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR- 174 (418)
Q Consensus 100 ~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~- 174 (418)
..++.++.++++ |++.+.++|++.|++.|.. .....++.|..|+++|++..++.+.+..+|..++..++..+.+.
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 165 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS 165 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999 9999999999999999998 78888999999999999999999999999999988877655432
Q ss_pred --cchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccch
Q 014820 175 --LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELV 252 (418)
Q Consensus 175 --~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (418)
.+||..+.+.++++++..+...++||+|+|+..+++.+|+++..++.++.+..+.+ .+++.+
T Consensus 166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~-----------~~~~~~----- 229 (451)
T PF00083_consen 166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEE-----------IEEIKA----- 229 (451)
T ss_pred ccccccccccccccccccccccccccccccceeccccccccccccccccccccccccc-----------cccccc-----
Confidence 45999999999888887777788999999999999999888877664332111100 000000
Q ss_pred hhcccCCCCCcccccchhhHHHHhhchhh-HHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccccccCCCccCCCCCChh
Q 014820 253 HLLSSNGGNKTTEGKSGLSLFLMLFSSKL-ARTTILLWLLLFGNSF-AYYAVVLLISELSSLDTRCRSPLMFSHHPQDAN 330 (418)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (418)
+.++.++.+..++++++++. +++............. .++....+.+.+.... +.+..
T Consensus 230 ---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~-----------~~~~~- 288 (451)
T PF00083_consen 230 ---------EKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENA-----------GISNS- 288 (451)
T ss_pred ---------ccccccccceeeeecccccccccccccccccccccccccccccccccccccccc-----------ccccc-
Confidence 00000011145666776532 3444444444333322 2233334445444222 23333
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH--h---hch----hHHHHHHHHHHHHH-HHhhh
Q 014820 331 LYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV--T---YQS----NILTTGLLFGARMC-VMGAF 400 (418)
Q Consensus 331 ~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~--~---~~~----~~~~~~~~~~~~~~-~~~~~ 400 (418)
.......++..+++.+++.+++||+|||+.++.+..+++++.+.+. . ... ....+....+..+. ..+..
T Consensus 289 -~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~ 367 (451)
T PF00083_consen 289 -FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWG 367 (451)
T ss_pred -cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccc
Confidence 3444556677788888888999999999999999888888777664 1 111 12222222222222 23556
Q ss_pred HhHhhhhccccccccccC
Q 014820 401 TVSLIYAAEVKLMTLFTV 418 (418)
Q Consensus 401 ~~~~~~~~e~~p~~~R~~ 418 (418)
++.+.+++|++|++.|+.
T Consensus 368 ~~~~~~~~ElfPt~~R~~ 385 (451)
T PF00083_consen 368 PLPWIYTAELFPTKVRST 385 (451)
T ss_pred cccccccccccccccccc
Confidence 788899999999999973
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-26 Score=209.55 Aligned_cols=296 Identities=17% Similarity=0.154 Sum_probs=213.7
Q ss_pred HHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 014820 42 MILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRC 121 (418)
Q Consensus 42 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 121 (418)
...++.+|.+.+++|+|.++.+++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+.. .+++.+.+++.|+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 95 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA 95 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999998888887777 7789999999999
Q ss_pred HHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCc--chHHHHHHhHHHHHHHHHHHhhc
Q 014820 122 LVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL--DWRWLLGLSSIPSFILLAFLGFQ 198 (418)
Q Consensus 122 l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--~w~~~~~~~~~~~~~~~~~~~~~ 198 (418)
+.|++.+.. ......+.|++| ++|++++++++.+..+|..+++.+++.+.++. +||..|.+.+++.++... .++
T Consensus 96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~ 172 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AWI 172 (355)
T ss_pred HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHh
Confidence 999999887 556667788886 68999999999999999999999988887654 399988776654433322 223
Q ss_pred cCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhc
Q 014820 199 PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS 278 (418)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 278 (418)
|+.++ +.+ +++ + ......++.++
T Consensus 173 ~~~~~------~~~------------~~~--~-------------------------------------~~~~~~~~~~~ 195 (355)
T TIGR00896 173 PQVRR------RVA------------ANQ--T-------------------------------------TTRLTPVRIWR 195 (355)
T ss_pred hhhcc------ccC------------CCC--C-------------------------------------CCCCCCchhhc
Confidence 33211 000 000 0 00001122333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhh-c
Q 014820 279 SKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA-G 357 (418)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~-g 357 (418)
++ ..+......+.....++....+.|.+.++. +.+..+.+.......++.++++++.|++.||+ +
T Consensus 196 ~~---~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-----------g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~ 261 (355)
T TIGR00896 196 SP---LAWQVTVFFGLQSGLYYSLIGWLPAILISH-----------GASAATAGSLLALMQLAQAASALLIPALARRVKD 261 (355)
T ss_pred CH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcc
Confidence 32 222333333445556666777888777543 47777888888888999999999999999999 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccc
Q 014820 358 RKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLM 413 (418)
Q Consensus 358 rr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 413 (418)
||+.+..+..+.+++.+.+.+..+.... ....+.+++.+..++...+...+..++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~ 316 (355)
T TIGR00896 262 QRGIVAVLAVLQLVGLCGLLFAPMHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQ 316 (355)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccC
Confidence 6666677777777766666553332222 245567788877777777766655443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-28 Score=213.02 Aligned_cols=370 Identities=19% Similarity=0.264 Sum_probs=258.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc-C-------CCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcch
Q 014820 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEW-N-------LSSTEESLITTSVFAGLVVGAYAWGLVADNYGRR 90 (418)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr 90 (418)
.++++.+.+.+..++++...++...++.+.|.+...+ | +++...+.+..+.++|..+||+++|++.||+|||
T Consensus 35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK 114 (538)
T KOG0252|consen 35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK 114 (538)
T ss_pred hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 3566777888888999999999999999888775543 2 4556678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH
Q 014820 91 MGFLGEALVTAGAGLLSSFSP-------NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSV 162 (418)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 162 (418)
+++...++++.+++++++++. -.+++.+.|+++|+|.|+- |...+..+|..-++.||...+...+..+.|..
T Consensus 115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil 194 (538)
T KOG0252|consen 115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL 194 (538)
T ss_pred hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence 999999999999998777642 2578889999999999998 77778889999999999999988777777777
Q ss_pred HHHHHHHHhhc----C-----------cchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhc-ChHHHHHHHHHHHHhcC
Q 014820 163 SEAIGAWIIMP----R-----------LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG-RTAEAHRALEKIAQVNK 226 (418)
Q Consensus 163 ~~~~~~~~l~~----~-----------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 226 (418)
.|.+++..+.. . .-||..+.+.++++++++...+.+||++++..... +.+.+.+. ..
T Consensus 195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d-------~~ 267 (538)
T KOG0252|consen 195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGD-------MK 267 (538)
T ss_pred hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhc-------cc
Confidence 77666655431 1 23999999888888888888888999987652222 11111100 00
Q ss_pred CCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014820 227 TKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLI 306 (418)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (418)
+..+. +.++.++ .+......++....+...+..+.-+..+..+..||...+.+|+..++.
T Consensus 268 k~~~~---------~~~~~~~-----------~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~ 327 (538)
T KOG0252|consen 268 KVLSV---------DIEAEST-----------AESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQ 327 (538)
T ss_pred ccccc---------ccchhhc-----------cccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHH
Confidence 00000 0000000 011111122222344555544466788888999999999999999999
Q ss_pred HHhhhccccccCCCccCCCCCC-hhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchh---
Q 014820 307 SELSSLDTRCRSPLMFSHHPQD-ANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSN--- 382 (418)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~--- 382 (418)
.+.....+..+..... ... ..+-....+.....++|..+...++|++||++..+-+++++.+..+.++...+.
T Consensus 328 s~I~~~ig~~~~~~~~---~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~ 404 (538)
T KOG0252|consen 328 SVIFSAIGVIPSANTY---HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLEN 404 (538)
T ss_pred HHHHHhhccCCCcchH---HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccc
Confidence 9888654422111100 000 011222333334445677888899999999999999999999999999875441
Q ss_pred --HHHHHHHHHHHHHHHhhhHhHhhhhccccccccccC
Q 014820 383 --ILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFTV 418 (418)
Q Consensus 383 --~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~ 418 (418)
...+...+...++..+.......+.+|.||+++|+.
T Consensus 405 ~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t 442 (538)
T KOG0252|consen 405 TIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRST 442 (538)
T ss_pred cCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhh
Confidence 122222333334444555678899999999999984
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-25 Score=205.13 Aligned_cols=314 Identities=11% Similarity=-0.066 Sum_probs=228.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHH----HHHHHHHHHHHH
Q 014820 30 AGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGF----LGEALVTAGAGL 105 (418)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~----~~~~~~~~~~~~ 105 (418)
+.+.++..+.......+.+|.+.+++|.|.++.|++.+.+.+...+++++.|.++||+||+... ..+..+..+ .
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~ 86 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A 86 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence 3345666666667788889999999999999999999999999999999999999999985433 222222222 2
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHh
Q 014820 106 LSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLS 184 (418)
Q Consensus 106 ~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~ 184 (418)
....+++++.+++.|++.|.+.+.. +...++..++ +++|+++.|....+.++|.+++|++++.+.+++|||..|++.
T Consensus 87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~ 164 (382)
T TIGR00902 87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL 164 (382)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 3346789999999999999888776 7666666554 478899999999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcc
Q 014820 185 SIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT 264 (418)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (418)
++..++.+ ..+.++++++. ++.++.
T Consensus 165 ~~~~~~~~-~~~~~~~~~~~----~~~~~~-------------------------------------------------- 189 (382)
T TIGR00902 165 TAGLAFML-IGFLIKPTIPP----KDAIPE-------------------------------------------------- 189 (382)
T ss_pred HHHHHHHH-HHHHcCCCCCC----Cccccc--------------------------------------------------
Confidence 55433222 22233332110 000000
Q ss_pred cccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhH
Q 014820 265 EGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIP 344 (418)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (418)
++.+...+.+++++++..+.. ....+.....+.....+.+.+.++. |.++...+.......++.++
T Consensus 190 ~~~~~~~~~~~~l~~~~~~~~---l~~~~l~~~~~~~~~~~~~~~l~~~-----------g~s~~~~g~l~~~~~~~~i~ 255 (382)
T TIGR00902 190 DESQGDSAFIALLKNPMNLRF---LAAVCLIQGAHAAYYGFSAIYWQAA-----------GISASATGLLWGIGVLAEII 255 (382)
T ss_pred cccccchhHHHHHcChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHC-----------CCCHhHHHHHHHHHHHHHHH
Confidence 000011234566665433333 3333333334444444666666433 57888888888888899999
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 345 GLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 345 g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
+.++.+++.||+|+|+.+.++.+...+..+.+.+.++.+..+...++.++..+...+....++.+. |++.|+
T Consensus 256 ~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~ 327 (382)
T TIGR00902 256 IFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIA 327 (382)
T ss_pred HHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHH
Confidence 999999999999999999999999999988888877777777788888999999888888899888 877764
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-24 Score=202.38 Aligned_cols=307 Identities=12% Similarity=0.086 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHhhhhh-hhhhcCCCcchhHHHHHHHHH-HHHHHHhHHHHhhhhhcchHHH-HHHHHHHHHHHHHHhhh
Q 014820 34 WVAEAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFA-GLVVGAYAWGLVADNYGRRMGF-LGEALVTAGAGLLSSFS 110 (418)
Q Consensus 34 ~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~-~~~~~~~~~~~~~~~~~ 110 (418)
.+..........+..|. +.+++|+|.++.|++.+...+ ++.++.+++++ +||+||||.+ ..+.++.+++..+.+++
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 102 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN 102 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence 44445554555555544 578899999999999776555 56666655666 9999999875 45566666777778888
Q ss_pred hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHH
Q 014820 111 PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNR--GMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187 (418)
Q Consensus 111 ~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~ 187 (418)
++++.+++.+.+.|...+.. +....+..++.+++.| +...++.+.+.++|.+++|++++.+.+++|||..|++.++.
T Consensus 103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~ 182 (393)
T PRK15011 103 RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVA 182 (393)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence 99988876655554444444 6666777888776655 34457888999999999999999999889999999988877
Q ss_pred HHHHHH-HHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccc
Q 014820 188 SFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEG 266 (418)
Q Consensus 188 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (418)
.++..+ ..+++||.++. ++ ++. ++ .+
T Consensus 183 ~~~~~~~~~~~~~~~~~~----~~-~~~----------~~---------------~~----------------------- 209 (393)
T PRK15011 183 FIVCGVMVWLFLPSMRKE----LP-LAT----------GT---------------LE----------------------- 209 (393)
T ss_pred HHHHHHHHHhhcCccCCC----Cc-ccc----------cc---------------cc-----------------------
Confidence 766544 34456665320 00 000 00 00
Q ss_pred cchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHH
Q 014820 267 KSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGL 346 (418)
Q Consensus 267 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 346 (418)
..++ ++ +..+......+.....++....+.|.+.++. .+.++.+.+.......+..+++.
T Consensus 210 -----~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----------~~~~~~~~g~~~~~~~~~~i~~~ 269 (393)
T PRK15011 210 -----APRR--NR---RDTLLLFVICTLMWGTNSLYIINMPLFIINE----------LHLPEKLAGVMMGTAAGLEIPTM 269 (393)
T ss_pred -----cccc--cc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCCHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 0011111111111222333344566555322 24666666666666667778899
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhccccccc
Q 014820 347 LLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMT 414 (418)
Q Consensus 347 ~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 414 (418)
++.|+++||++||+.+..+.....+....+....+.+......++.++..+...+....+..|.+|++
T Consensus 270 ~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~ 337 (393)
T PRK15011 270 LIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ 337 (393)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999877766555554444333444433344444444555555556667788999876
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-24 Score=204.29 Aligned_cols=322 Identities=15% Similarity=0.091 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhh-----cchHH-HHHHHHHH
Q 014820 27 LAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY-----GRRMG-FLGEALVT 100 (418)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~ 100 (418)
.....+..+..+......+..+|.+.++.|.|.++.+.+ +.....+ ++.+++|+++||+ ||||. ++.+.++.
T Consensus 14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~ 91 (491)
T PRK11010 14 SAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL 91 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence 333445566677777888888999999999999999987 3334444 6899999999999 99986 55777777
Q ss_pred HHHHHHHhhh---hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc-Cc
Q 014820 101 AGAGLLSSFS---PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-RL 175 (418)
Q Consensus 101 ~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~ 175 (418)
+++...+++. ++++.+.+.+++.|++.+.. +...++..|++|+++|+++.++...+..+|.++++.++.++.+ ..
T Consensus 92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~ 171 (491)
T PRK11010 92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL 171 (491)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7777766664 47888999999999998887 7777899999999999999999999999999999999999988 57
Q ss_pred chHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhc
Q 014820 176 DWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLL 255 (418)
Q Consensus 176 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (418)
|||..|++.++..++..+..++.||+++.. ++.++.
T Consensus 172 GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~~----------------------------------------- 207 (491)
T PRK11010 172 GWQGMYWLMAALLIPCIIATLLAPEPTDTI---PVPKTL----------------------------------------- 207 (491)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcccc---ccccch-----------------------------------------
Confidence 999999998887776655555566653210 000000
Q ss_pred ccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHH
Q 014820 256 SSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE 335 (418)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (418)
+++...+++++++++..+......+ ......+....+.+.+..+ ..|.+..+.+...
T Consensus 208 ----------~~~~~~~l~~~~~~~~~~~~ll~~~---l~~~~~~~~~~~~~~~l~~----------~~G~s~~~~g~~~ 264 (491)
T PRK11010 208 ----------EQAVVAPLRDFFGRNNAWLILLLIV---LYKLGDAFAMSLTTTFLIR----------GVGFDAGEVGLVN 264 (491)
T ss_pred ----------hhhHHHHHHHHHcCcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----------hcCCCHHHHHHHH
Confidence 0001124555665433232222222 2222222233344444321 1257878877776
Q ss_pred -HHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH---Hhh-chhHHHHHHHHHHHHHHHhhhHhHhhhhccc
Q 014820 336 -FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL---VTY-QSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410 (418)
Q Consensus 336 -~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 410 (418)
....++.++|.+++|+++||+++|+.+.++..+.++..+.+ ... .+.+......++..++.+...+..+++..++
T Consensus 265 ~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l 344 (491)
T PRK11010 265 KTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTL 344 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35557889999999999999999888776665544433222 222 2222222233333333343445556676777
Q ss_pred ccccccc
Q 014820 411 KLMTLFT 417 (418)
Q Consensus 411 ~p~~~R~ 417 (418)
.|++.++
T Consensus 345 ~~~~~~~ 351 (491)
T PRK11010 345 CNKSFSA 351 (491)
T ss_pred cCCCCcH
Confidence 7766553
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-25 Score=209.65 Aligned_cols=368 Identities=15% Similarity=0.080 Sum_probs=267.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHH
Q 014820 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL 98 (418)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 98 (418)
.+.+.|.+.+..++..+.........+...+.+.++++.+.++++|+.++....+.+..|+.+.+.||+|.|.+.+.|.+
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~ 119 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL 119 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence 45678888888888888777777888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHH-HHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 014820 99 VTAGAGLLSSFSPNYITLITL-RCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD 176 (418)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~~-r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 176 (418)
+.+++.++.++++++|++++. -++.|+|.|.. ......+. .+.+|+|+.+.|+...+.++|..+-|.+...+.+.+|
T Consensus 120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G 198 (509)
T KOG2504|consen 120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG 198 (509)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC
Confidence 999999999999999998876 58889999998 44444555 5557899999999999999999999999999999999
Q ss_pred hHHHHHHhHHHHHHHHHHHhhccC-chhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCC-c----c
Q 014820 177 WRWLLGLSSIPSFILLAFLGFQPE-SPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAP-P----E 250 (418)
Q Consensus 177 w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~ 250 (418)
||+.+++.+.+.+-.++.....++ .++. +++.++..+. ...+.+..+... +.+..+.... . .
T Consensus 199 ~r~~~l~~~~~~l~~~~~~~~~rp~~~~~---~~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 266 (509)
T KOG2504|consen 199 WRGALLIFGGISLNVLVAGALLRPLSPPK---KPNEEKDLRN-------SAASVESTPKPV--ELRISERDSGLKKLSLS 266 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCcCC---Cchhhhhhcc-------cccccccccccc--ccccccCCCCCCccccc
Confidence 999999888877666554444333 3221 1110010000 000000000000 0000000000 0 0
Q ss_pred chhhcccCCCCCcccccchhhHH---HHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCC
Q 014820 251 LVHLLSSNGGNKTTEGKSGLSLF---LMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQ 327 (418)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (418)
.....++. +++.+......... .++++. +.++...+......+.++....+++.+..+. +.+
T Consensus 267 ~~~~~~~~-~~~~~~~~~~~~~~~~d~~ll~~---~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~-----------g~~ 331 (509)
T KOG2504|consen 267 NLATLKRG-PDKWRNSPLQAFLSMLDLSLLKD---PKFLLLALSNLFAYLGFNVPFVYLPSYAKSL-----------GLS 331 (509)
T ss_pred chhhhhhC-CccccccchhhhhhhhhHHHHcC---chHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------CCC
Confidence 00000000 00001001111111 344554 4556666666677888888888999888544 588
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHHHHhhhc--hhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhh
Q 014820 328 DANLYIDEFITSLAEIPGLLLAAILVDTAG--RKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLI 405 (418)
Q Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~g~l~d~~g--rr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (418)
..++.....+.++..++++++.|++.|+.. ++....++.++.+++.+.+.+.++.+.++...+++|+..+...+....
T Consensus 332 ~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~ 411 (509)
T KOG2504|consen 332 SNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPV 411 (509)
T ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999976 556667788888888888888888888999999999999988888888
Q ss_pred hhccccccc
Q 014820 406 YAAEVKLMT 414 (418)
Q Consensus 406 ~~~e~~p~~ 414 (418)
.+.|+.+.+
T Consensus 412 i~~~~~g~~ 420 (509)
T KOG2504|consen 412 ILVDLVGLE 420 (509)
T ss_pred HHHHHcChh
Confidence 888887765
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-24 Score=198.79 Aligned_cols=308 Identities=7% Similarity=-0.105 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcch----HHHHHHHHHHHHHHHHHhh
Q 014820 34 WVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRR----MGFLGEALVTAGAGLLSSF 109 (418)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr----~~~~~~~~~~~~~~~~~~~ 109 (418)
++..........+.+|.+.+++|.|.++.|++.+++.++..+++++.|+++||+||| +.+.++..+. .......
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~ 90 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG 90 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence 333445556777888888899999999999999999999999999999999999984 3332222221 2223344
Q ss_pred hhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHH
Q 014820 110 SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPS 188 (418)
Q Consensus 110 ~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~ 188 (418)
+++++.+++.|++.|++.+.. +...++..++ .++|+++.+....+.++|.+++|++++++.+++|||..|++.++..
T Consensus 91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~ 168 (382)
T PRK11128 91 AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGV 168 (382)
T ss_pred cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 688999999999999988877 7666666666 4568888999999999999999999999999999999998777544
Q ss_pred HHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccc
Q 014820 189 FILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKS 268 (418)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (418)
++..+...+.||.++ +++.++ + .++
T Consensus 169 ~~~~~~~~~~~~~~~----~~~~~~-------------------------------------------------~--~~~ 193 (382)
T PRK11128 169 ASMLLGQLLRPTIMP----QGESRQ-------------------------------------------------Q--ESA 193 (382)
T ss_pred HHHHHHHHccCCCCC----cccccc-------------------------------------------------c--ccc
Confidence 444333333333210 000000 0 000
Q ss_pred hhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHH
Q 014820 269 GLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLL 348 (418)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 348 (418)
...+++++++++..+.... ..+.....+.....+.+.+..+. +.+..+.+.......+..++..++
T Consensus 194 ~~~~~~~i~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~-----------g~s~~~~g~~~~~~~~~~~~~~~~ 259 (382)
T PRK11128 194 GWPAWKALLKEPTVWRFLL---CVSLLQGSHAAYYGFSAIYWQAA-----------GYSASTIGYLWSLGVVAEVLIFAF 259 (382)
T ss_pred ccchHHHHHcChhHHHHHH---HHHHHHHHhHhHHHHHHHHHHHC-----------CCCHhHHHHHHHHHHHHHHHHHHH
Confidence 1124566666643333222 22222222333333445554332 467777777777778888899999
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhccccccc
Q 014820 349 AAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMT 414 (418)
Q Consensus 349 ~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 414 (418)
.+++.||+++|+.+..+.++.++..+.+...++.+..++..++.+++.+...+....+..+..|++
T Consensus 260 ~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 325 (382)
T PRK11128 260 SNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSE 325 (382)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhh
Confidence 999999999999999999888888777777666666666777778877777777777777764443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.6e-24 Score=192.32 Aligned_cols=350 Identities=13% Similarity=0.026 Sum_probs=220.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcch-hHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHH
Q 014820 22 YQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTE-ESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVT 100 (418)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 100 (418)
+++..+.+|..+++. -.+...+...|.+.+++|+|.++ .|.+.++++.+|++++++.|+++||+|.|+++.++.+.+
T Consensus 25 W~~~~~~lC~fGF~~--e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~W 102 (511)
T TIGR00806 25 WRVLVLYLCFYGFMA--QFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSF 102 (511)
T ss_pred hhHHHHHHHHHHHHH--HhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 344444444444433 34678888899999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHH
Q 014820 101 AGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 180 (418)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~ 180 (418)
++..++.++++++..+.+.|++.|++.|...+...++..|+|+++|+++.++...+..+|.+++++++.+ ...+|||..
T Consensus 103 sl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y 181 (511)
T TIGR00806 103 VCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISY 181 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhH
Confidence 9999999999999999999999999999988667899999999999999999999999999999999999 456899985
Q ss_pred HHHh--H-HHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhccc
Q 014820 181 LGLS--S-IPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSS 257 (418)
Q Consensus 181 ~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (418)
+.+. . ....+.+++.+++|..++.+.-+++.++. +. ... +.++. .+.+. . +.
T Consensus 182 ~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~-~~-------~~~-------------~~~~~-~~~~~--~-~~ 236 (511)
T TIGR00806 182 STLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVR-GA-------LPC-------------ELDQM-VPGPG--G-KL 236 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccc-cc-------ccc-------------ccccC-CCCCc--c-cc
Confidence 5432 2 22333456677788554433222111000 00 000 00000 00000 0 00
Q ss_pred CCCCCcccc---cchhhHHHHhhchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHH
Q 014820 258 NGGNKTTEG---KSGLSLFLMLFSSK--LARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLY 332 (418)
Q Consensus 258 ~~~~~~~~~---~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (418)
.+..+.... +.-..++++-.+++ ..+.+|-......-....+|.-.+|...-. ..+.-+ +
T Consensus 237 ~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~--------------~~~~yN-G 301 (511)
T TIGR00806 237 EDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDE--------------SLNKYN-G 301 (511)
T ss_pred chhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCC--------------CccccC-C
Confidence 000000000 11122233333322 122223222222223334444444433111 000112 1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhchh--HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhccc
Q 014820 333 IDEFITSLAEIPGLLLAAILVDTAGRK--LSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410 (418)
Q Consensus 333 ~~~~~~~~~~~~g~~~~g~l~d~~grr--~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 410 (418)
..-.+..+.+.++.+..|++-.++.+- ..+.++.++.+..++++...++.|..++..++++.......++...-+++.
T Consensus 302 ~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~ 381 (511)
T TIGR00806 302 AVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASS 381 (511)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344455667788888886666442 334445556666666666778888888888888877777777766665554
Q ss_pred cccc
Q 014820 411 KLMT 414 (418)
Q Consensus 411 ~p~~ 414 (418)
...+
T Consensus 382 L~~~ 385 (511)
T TIGR00806 382 LSKE 385 (511)
T ss_pred hccc
Confidence 4433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.8e-24 Score=224.34 Aligned_cols=314 Identities=12% Similarity=-0.041 Sum_probs=218.6
Q ss_pred HHHHhhhhhhhhhcCCCcc--hhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHH---hhhhhHHHH
Q 014820 42 MILSFVGPTVKSEWNLSST--EESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS---SFSPNYITL 116 (418)
Q Consensus 42 ~~~~~~~~~~~~~~~~s~~--~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l 116 (418)
.....+.+.+..+++.+.+ ..+++.+++.+++.++++++|+++||+|||++++.+.++.+++.++. ..+++++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (1146)
T PRK08633 27 GHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLA 106 (1146)
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 3344445556666666543 46899999999999999999999999999999998887766555543 345789999
Q ss_pred HHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC--------c-chHHHHHHhHH
Q 014820 117 ITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR--------L-DWRWLLGLSSI 186 (418)
Q Consensus 117 ~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~-~w~~~~~~~~~ 186 (418)
+++|++.|++.+.. ++..+++.|++|+++|++++++...+..+|.++++++++++... + +|++.+.+..+
T Consensus 107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 186 (1146)
T PRK08633 107 FAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLL 186 (1146)
T ss_pred HHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHH
Confidence 99999999999998 88888999999999999999999999999999999999998765 2 34444433333
Q ss_pred HHH-HHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCccc
Q 014820 187 PSF-ILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTE 265 (418)
Q Consensus 187 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (418)
... +.++..+.+|+.++....+.+ ++ ....
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------------------------------------------~~~~ 217 (1146)
T PRK08633 187 AVAVLGLIFAYRLPKVPAAAPEVFD-KK------------------------------------------------KYLF 217 (1146)
T ss_pred HHHHHHHHHHhcCcCCCCCCccccc-cc------------------------------------------------cccc
Confidence 322 333444556665431000000 00 0000
Q ss_pred ccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCCh-hHHHHHHHHHhhhhH
Q 014820 266 GKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA-NLYIDEFITSLAEIP 344 (418)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 344 (418)
.+.....++.+++++..+..++... ......+....+.+.+..+. .+.+.. ..++.....+++.++
T Consensus 218 ~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------~g~s~~~~~g~~~~~~~ig~~~ 284 (1146)
T PRK08633 218 PKLLWRNLKLLRSDRVLWLAIIGLS---YFWFISQLAQANFPAYAKEV----------LGLDNTFQVQYLLAASAIGIGI 284 (1146)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHH----------hCCCcHHHHHHHHHHHHHHHHH
Confidence 0111234555666544333222222 22222233334445444322 246666 777888888899999
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 345 GLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 345 g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
+.++.+++.||+++++.+.++.++.+++.+++.+..+.+...+..++.+++.+...+...++..+..|++.||
T Consensus 285 g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg 357 (1146)
T PRK08633 285 GSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELG 357 (1146)
T ss_pred HHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchh
Confidence 9999999999999998888888888877777776666666666777778888877788899999999999887
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-25 Score=214.74 Aligned_cols=302 Identities=13% Similarity=0.101 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 014820 28 AYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS 107 (418)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 107 (418)
+...+..+.........+..++.+.++|+++.++.|++.+.+.++++++.++.|++.||+|||+.+.++.++++++.+++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 33445666677777888889999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhh---------------------------------------------------hHHHHHHHHHHHHhhhhhh-HHHHH
Q 014820 108 SFSP---------------------------------------------------NYITLITLRCLVGVGLGSG-HVFLS 135 (418)
Q Consensus 108 ~~~~---------------------------------------------------~~~~l~~~r~l~G~~~g~~-~~~~~ 135 (418)
++.+ .+..++++|+++|+|.+.. +...+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 7653 2456778999999999988 88889
Q ss_pred HHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCc----------------------chHHHHHHhHHHHHHHHH
Q 014820 136 WFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL----------------------DWRWLLGLSSIPSFILLA 193 (418)
Q Consensus 136 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----------------------~w~~~~~~~~~~~~~~~~ 193 (418)
++.|++|+++|++.++++..+..+|.++|+++++++.+.+ +|+..|++.+++.++..+
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v 275 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI 275 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877532 278888888888777766
Q ss_pred HHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHH
Q 014820 194 FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLF 273 (418)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (418)
.++++|++.+....+.+.+..++ . ..+. .+.+. + .+.....++....+
T Consensus 276 ~l~~~p~~lp~~~~~~~~~~~~~---~--~~~~----------------~~~~~--~---------~~~~~~~~~~~~~~ 323 (633)
T TIGR00805 276 PFFFFPKALPKEGKRVNVDVHET---E--KLEK----------------SEDKS--R---------KKNSDITKDFPKII 323 (633)
T ss_pred HHHhCccccCCcccccchhhhhh---h--cccc----------------ccccc--c---------hhhhhhHHHHHHHH
Confidence 66666654221000000000000 0 0000 00000 0 00000001122345
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHh-hhhHHHHHHHHH
Q 014820 274 LMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSL-AEIPGLLLAAIL 352 (418)
Q Consensus 274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~g~l 352 (418)
+.+++++ .++...+..+.....+++...|.|.|+.+. ++.++.+++.......+ +.++|.+++|++
T Consensus 324 ~~Ll~n~---~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~----------~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l 390 (633)
T TIGR00805 324 KRLLCNP---IYMLVILAQVIDSLAFNGYITFLPKYLENQ----------YGISSAEANFLIGVVNLPAAGLGYLIGGFI 390 (633)
T ss_pred HHHHcCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCcHHHHHHHhhhhhhhHHHHHHhhhhhe
Confidence 6667663 445555555666677778888888888543 36777787777766555 567899999999
Q ss_pred Hhhhc--hhHHHHHHHHHHHHHHH
Q 014820 353 VDTAG--RKLSITIMFTLSCLFLL 374 (418)
Q Consensus 353 ~d~~g--rr~~l~~~~~~~~~~~~ 374 (418)
+||++ .|+.+..+.++..++.+
T Consensus 391 ~~r~~~~~~~~~~~~~~~~~~~~~ 414 (633)
T TIGR00805 391 MKKFKLNVKKAAYFAICLSTLSYL 414 (633)
T ss_pred eeeecccHHHHHHHHHHHHHHHHH
Confidence 99987 45666666665555543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-23 Score=193.06 Aligned_cols=317 Identities=16% Similarity=0.059 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhh-----cchH-HHHHHHHHHHHHHH
Q 014820 32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY-----GRRM-GFLGEALVTAGAGL 105 (418)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~-~~~~~~~~~~~~~~ 105 (418)
..++.++.........+|.+.++.|+|.+++|++..+... .+..+++|+++||+ |||| .+.++.++.+++..
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~ 83 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA 83 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence 4466777888888888999999999999999999777775 69999999999999 8876 67788888887777
Q ss_pred HHhhh---hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC-cchHHH
Q 014820 106 LSSFS---PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR-LDWRWL 180 (418)
Q Consensus 106 ~~~~~---~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~w~~~ 180 (418)
...+. .+++.+++..++.++..+.. ++..+++.|+.|+++|+++.++...+.++|.++++.++..+.+. +|||..
T Consensus 84 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~ 163 (402)
T PRK11902 84 AMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNT 163 (402)
T ss_pred HHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHH
Confidence 77766 35777777877888777777 77788999999999999999999999999999999999888875 599999
Q ss_pred HHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCC
Q 014820 181 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGG 260 (418)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (418)
|++.++..++..+..++.||+++. +++.++..
T Consensus 164 f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~~~--------------------------------------------- 195 (402)
T PRK11902 164 YLLMAGLMLAGALTTLWAPEPEVP---ARPPRSLG--------------------------------------------- 195 (402)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccc---ccccchhH---------------------------------------------
Confidence 999888776655555556654321 00000000
Q ss_pred CCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHH-
Q 014820 261 NKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITS- 339 (418)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 339 (418)
++...+++++++++..+..+.............+.. ..+.+.. ..+.++.+.+......+
T Consensus 196 ------~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~--~~~~l~~-----------~~G~~~~~~g~~~~~~~~ 256 (402)
T PRK11902 196 ------EAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSL--STTFLIR-----------GAGFSAGEVGIVNKTLGL 256 (402)
T ss_pred ------HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHH--HHHHHHH-----------hcCCCHHHHHHHHhHHHH
Confidence 011235666777655444443333322211111111 1121211 12567777777665444
Q ss_pred hhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH---Hhh-chhHHHHHHH----HHHHHHHHhhhHhHhhhhcccc
Q 014820 340 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL---VTY-QSNILTTGLL----FGARMCVMGAFTVSLIYAAEVK 411 (418)
Q Consensus 340 ~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l---~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~~ 411 (418)
++.+++.++++++.||+++|+.+..+..+.++..+.+ ... .+.+...... +..++..+...+....++.+.+
T Consensus 257 ~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 336 (402)
T PRK11902 257 AATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSF 336 (402)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4578999999999999999988777666655544333 232 2333333333 2344555666777888888888
Q ss_pred cccccc
Q 014820 412 LMTLFT 417 (418)
Q Consensus 412 p~~~R~ 417 (418)
|.+.++
T Consensus 337 ~~~~~~ 342 (402)
T PRK11902 337 SATQYA 342 (402)
T ss_pred cHHHHH
Confidence 876543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=221.76 Aligned_cols=323 Identities=12% Similarity=-0.063 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHHHHHhhhh-hhhhhcCCCc-chhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHH---HHHHHHHHHH
Q 014820 31 GLGWVAEAMEIMILSFVGP-TVKSEWNLSS-TEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLG---EALVTAGAGL 105 (418)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~-~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~---~~~~~~~~~~ 105 (418)
++..+..+.....+..+.. .+..+.+.+. ...++..+++.+.+.++++++|+++||+|||+++.. +.+...+..+
T Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~ 100 (1140)
T PRK06814 21 FFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAI 100 (1140)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333332 3333443333 346888899999999999999999999999997643 2222222223
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHh
Q 014820 106 LSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLS 184 (418)
Q Consensus 106 ~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~ 184 (418)
.....++++.++++|+++|++.+.. ++..+++.+++|+++|++++|+.+++.++|.++||++++++....+|+..|...
T Consensus 101 ~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~ 180 (1140)
T PRK06814 101 YGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALL 180 (1140)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3334489999999999999999988 888999999999999999999999999999999999999999999999998555
Q ss_pred HHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcc
Q 014820 185 SIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT 264 (418)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (418)
++..++.+++.+++++.+.. +...+....
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------------------------------------------------ 209 (1140)
T PRK06814 181 MGIAVLGWLASLFIPKTGNA---APDLKIDRN------------------------------------------------ 209 (1140)
T ss_pred HHHHHHHHHHHhhCCCCCCC---CCCCeeccc------------------------------------------------
Confidence 55555555555566654320 000000000
Q ss_pred cccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhH
Q 014820 265 EGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIP 344 (418)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (418)
..++....++.+.+++..+ ...+..+...+..+....+.|.|..+. .+.+....+......+++.++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~----------~g~~~~~~g~~~~~~~~g~~i 276 (1140)
T PRK06814 210 IIRSTITLLKYAKADKRIW---LAILGISWFWLVGAVVLSQLPLLAKET----------LGGDENVATLFLAVFSVGVAV 276 (1140)
T ss_pred hHHHHHHHHHHHhcCchHH---HHHHHHHHHHHHHHHHHHHhHHHHHHH----------cCCchHHHHHHHHHHHHHHHH
Confidence 0001112445555543333 333333333344445555667666432 257778888888899999999
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh--------------------chhHHHHHHHHHHHHHHHhhhHhHh
Q 014820 345 GLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--------------------QSNILTTGLLFGARMCVMGAFTVSL 404 (418)
Q Consensus 345 g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (418)
|.++.|++.|+..+++.+..+.++.+++.+.+.+. .+.+...+..++.|++.+...+...
T Consensus 277 g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 356 (1140)
T PRK06814 277 GSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLF 356 (1140)
T ss_pred HHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999988776665555555544444333321 4445556667777888787778899
Q ss_pred hhhcccccccccc
Q 014820 405 IYAAEVKLMTLFT 417 (418)
Q Consensus 405 ~~~~e~~p~~~R~ 417 (418)
+++.+..|++.||
T Consensus 357 ~~~~~~~p~~~~G 369 (1140)
T PRK06814 357 AALQAWANPAHRA 369 (1140)
T ss_pred HHHHhhCCcccce
Confidence 9999999999987
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-22 Score=177.07 Aligned_cols=318 Identities=15% Similarity=0.105 Sum_probs=246.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHH
Q 014820 26 VLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL 105 (418)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 105 (418)
.+.++...++..++......++.|.+++.++++..|.+++...++.||.+.+++.|++.+|+|+|+.+++|+.++++++.
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~ 93 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA 93 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 44455555667777778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh---hhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC-------
Q 014820 106 LSS---FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR------- 174 (418)
Q Consensus 106 ~~~---~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------- 174 (418)
+.. ...++..++++.++.|.|.+.. ..+.+++....++++..+.+++.+...++|.+++|+++..+..+
T Consensus 94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~ 173 (422)
T COG0738 94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMS 173 (422)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccC
Confidence 884 5678999999999999999999 89999999999999999999999999999999999999887652
Q ss_pred ------------cchHHHHHHhHHHHHHHHHHHhhc--cCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCC
Q 014820 175 ------------LDWRWLLGLSSIPSFILLAFLGFQ--PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 240 (418)
Q Consensus 175 ------------~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (418)
..||.+|...+...+++.+..... |+.++ +
T Consensus 174 ~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~--------~---------------------------- 217 (422)
T COG0738 174 AAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV--------A---------------------------- 217 (422)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc--------c----------------------------
Confidence 136777766665555444433322 21110 0
Q ss_pred CCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 014820 241 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPL 320 (418)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (418)
++++.++......++++++..+ ...+..|+..........|.+.|..+..
T Consensus 218 ---------------------~~~~~~~~~~~~~~l~~~~~~~---~gvl~~FlYVG~Eva~gsfl~~y~~~~~------ 267 (422)
T COG0738 218 ---------------------APSLGASGSAGLSSLFQNKHLR---LGVLAIFLYVGAEVAIGSFLVSYLEELL------ 267 (422)
T ss_pred ---------------------cccccccccchHHHHHhChHHH---HHHHHHHHHHhHHHHHHHHHHHHHHhcC------
Confidence 0000000011456666665444 4444445455555556667777775432
Q ss_pred ccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhh
Q 014820 321 MFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAF 400 (418)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 400 (418)
+.+..+.....+....+.++|++++.++..|+...+.+.....+..+.++...+..+. ..+...++.|++.+..+
T Consensus 268 ----g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~-v~~~~l~~ig~F~simf 342 (422)
T COG0738 268 ----GLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGV-VALYALFLIGLFNSIMF 342 (422)
T ss_pred ----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHhHHHH
Confidence 5788888888888899999999999999999999999888887777777766666664 45566777888899999
Q ss_pred HhHhhhhccccccc
Q 014820 401 TVSLIYAAEVKLMT 414 (418)
Q Consensus 401 ~~~~~~~~e~~p~~ 414 (418)
|+.++...+..|.+
T Consensus 343 PTIfslal~~l~~~ 356 (422)
T COG0738 343 PTIFSLALKNLGEH 356 (422)
T ss_pred HHHHHHHHhccCcc
Confidence 99999999998844
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=193.83 Aligned_cols=175 Identities=17% Similarity=0.132 Sum_probs=138.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHH
Q 014820 21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVT 100 (418)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 100 (418)
.++|..+..........+ ..+.++...|.+.+++|+|.++.+++.++. ..+.++++++|++.||+|||+++.++.+++
T Consensus 24 ~~Rw~~lva~~~~~~~~g-~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~ 101 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTS-FMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVF 101 (591)
T ss_pred cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 456665555554444443 345677788999999999999999998874 445667888999999999999999999999
Q ss_pred HHHHHHHhhh------hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHH-HHHHHHHhh
Q 014820 101 AGAGLLSSFS------PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS-EAIGAWIIM 172 (418)
Q Consensus 101 ~~~~~~~~~~------~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~ 172 (418)
+++.++++++ ++++.+++.|++.|+|.+.. +.....+.+++| ++||++.|+...+.++|.++ +++...++.
T Consensus 102 ~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~ 180 (591)
T PTZ00207 102 CLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS 180 (591)
T ss_pred HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887 68999999999999999887 666778889986 78999999999999999976 454455544
Q ss_pred cCcchHHHHHHhHHHHHHHHH-HHhhccC
Q 014820 173 PRLDWRWLLGLSSIPSFILLA-FLGFQPE 200 (418)
Q Consensus 173 ~~~~w~~~~~~~~~~~~~~~~-~~~~~~~ 200 (418)
.+|+..|++.+++.+++.+ ...++++
T Consensus 181 --~~~~~~fl~l~vl~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 181 --DNTSAYFFFLMSFALVVGILAIVFMRL 207 (591)
T ss_pred --HhHHHHHHHHHHHHHHHHHHHHhheeC
Confidence 4688888888877777644 3444433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=192.16 Aligned_cols=322 Identities=14% Similarity=0.012 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHhhhh-hhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHh---h
Q 014820 34 WVAEAMEIMILSFVGP-TVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSS---F 109 (418)
Q Consensus 34 ~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~ 109 (418)
++..........+..| ++.+++|+|..+.|++.+++.+++.+++++.|+++||+|||++++++..+.+++..... .
T Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 98 (420)
T PRK09528 19 FFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVF 98 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333343334444444 45566999999999999999999999999999999999999999887666554433211 1
Q ss_pred hhh-----HHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHH
Q 014820 110 SPN-----YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGL 183 (418)
Q Consensus 110 ~~~-----~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~ 183 (418)
++. .....+.++..|.+.... +....+. +.. .+++++.++......++|..++|++++.+.+ .+|+.+|++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~ 175 (420)
T PRK09528 99 APLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERV-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWL 175 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHH-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHH
Confidence 111 111122233333332222 2222232 222 3467888899999999999999999998876 589999988
Q ss_pred hHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCc
Q 014820 184 SSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKT 263 (418)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (418)
.+++.++..+..++.+++++.. .+..++. + +
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----------~------------------------------------~ 206 (420)
T PRK09528 176 GSGSALILLVLLFFAKPDAPST--AKVANAL-----------G------------------------------------A 206 (420)
T ss_pred HHHHHHHHHHHHhcccccccch--hhhccch-----------h------------------------------------c
Confidence 8877776655554443322100 0000000 0 0
Q ss_pred ccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhh
Q 014820 264 TEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEI 343 (418)
Q Consensus 264 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (418)
++++....+.+..++++..+...+.. +.....+.....+.|.+..+.. ...+.+....+....+..+..+
T Consensus 207 ~~~~~~~~~~~~~l~~~~~~~l~l~~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~ 276 (420)
T PRK09528 207 NASAVSLKDALALLKLPKFWFLVLYV---IGVACFYDVFDQQFPNFFASFF-------ATPEQGTRVFGYLNSFQVFLEA 276 (420)
T ss_pred ccccccHHHHHHHccCCCeEeehHHH---HHHHHHHHHHHHHHHHHHHHHH-------hccCcchHHHHHHHHHHHHHHH
Confidence 00001122334455443322222211 1111111112222233221100 0112344555667777778888
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 344 PGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 344 ~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
++.+++|++.||+|+|+.+..+..+.++..+++.+.++.+..+....+.+...+...+....+..|.+|++.|+
T Consensus 277 ~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a 350 (420)
T PRK09528 277 LIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSA 350 (420)
T ss_pred HHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccee
Confidence 99999999999999999998888888888777777666665555566666666666666778889999998886
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-22 Score=185.19 Aligned_cols=324 Identities=15% Similarity=0.067 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHH--
Q 014820 31 GLGWVAEAMEIMILSFVGPTV-KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS-- 107 (418)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~-- 107 (418)
...+++.+.......+..|.+ .+++|++..+.|++.+.+.+++.+++++.|+++||+|||+.++.+....+++....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~ 87 (396)
T TIGR00882 8 GLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFI 87 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555566666654 56789999999999999999999999999999999999999988766665543322
Q ss_pred -hhh-----hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHH
Q 014820 108 -SFS-----PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 180 (418)
Q Consensus 108 -~~~-----~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~ 180 (418)
.+. +....+++.+++.|++.+.. +....+..+.. ++++...+......++|.+++|.+++.+.+ .+||.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~ 164 (396)
T TIGR00882 88 YVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIV 164 (396)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHH
Confidence 111 12334566788888887776 66666666643 334567778888889999999999888765 699999
Q ss_pred HHHhHHHHHHHHHHHhhc-cCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCC
Q 014820 181 LGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNG 259 (418)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (418)
|++.+++.++..+..+.. +|+|+. ++..+ +.+
T Consensus 165 f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--------~~~-------------------------------- 197 (396)
T TIGR00882 165 FWLGSGFALILMLLLMFAKPKAPSS-------ATVAN--------ALG-------------------------------- 197 (396)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchh-------hhhhc--------ccc--------------------------------
Confidence 998887777765444443 332210 00000 000
Q ss_pred CCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHH
Q 014820 260 GNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITS 339 (418)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (418)
. ++++++..+.+++++++..+... +..+.....+.....+.+.+..+.. ...+.+....+.......
T Consensus 198 --~-~~~~~~~~~~~~~l~~~~~~~~~---l~~~~~~~~~~~~~~~~~~y~~~~~-------~~~~~~~~~~g~~~~~~~ 264 (396)
T TIGR00882 198 --A-NASAFSLKLALELFRQRKFWMFV---LYVVGVACVYDVFDQQFANFFTSFF-------ATPQQGTRVFGYVTTMGE 264 (396)
T ss_pred --c-ccCCCCHHHHHHHHcCCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhc-------cccccchHHHHHHHHHHH
Confidence 0 00011123456666654332222 2222222222223223343332110 011233445566666777
Q ss_pred hhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 340 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 340 ~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
+...++.+..+++.||+|||+.+.++..+.++.........+.+......++.+.+..........+..+..|++.|+
T Consensus 265 i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a 342 (396)
T TIGR00882 265 LLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSA 342 (396)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEE
Confidence 888888999999999999999999888888887766666555555555555555555444445555667777777664
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-22 Score=190.26 Aligned_cols=169 Identities=13% Similarity=-0.017 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh-hhh--cCCCcchhHHHHHHHHHHHHHHHhHHHHhhhh-hcchHHHHHHHHHHHHHH
Q 014820 29 YAGLGWVAEAMEIMILSFVGPTV-KSE--WNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YGRRMGFLGEALVTAGAG 104 (418)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~ 104 (418)
.+.+..+......+...+.+|.+ .++ +|++..+.+++.+.+.+++.++++++|+++|| +|||+++.++.++.+++.
T Consensus 14 ~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~ 93 (475)
T TIGR00924 14 TLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGH 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 33445555566656556666655 445 89999999999999999999999999999999 899999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCC---chhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHH
Q 014820 105 LLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN---RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 180 (418)
Q Consensus 105 ~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~ 180 (418)
++.+++++++.+++.|++.|++.|.. +...++++|++|+++ |+++.+++..+.++|.+++|++++++.++.||++.
T Consensus 94 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~ 173 (475)
T TIGR00924 94 FMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVG 173 (475)
T ss_pred HHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 99999988899999999999999988 888889999998764 88999999999999999999999999998999999
Q ss_pred HHHhHHHHHHHHHHHhh
Q 014820 181 LGLSSIPSFILLAFLGF 197 (418)
Q Consensus 181 ~~~~~~~~~~~~~~~~~ 197 (418)
|.+.++..++..+.+.+
T Consensus 174 f~~~~~~~~~~~l~~~~ 190 (475)
T TIGR00924 174 FNLAAVGMVIGLLTFFA 190 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98877655544444333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-21 Score=184.71 Aligned_cols=365 Identities=18% Similarity=0.140 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhh
Q 014820 30 AGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF 109 (418)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 109 (418)
+++.....+......+..++.+..++|- .....|+.+...++.+++.++.|+++|.||||.+++.+.++..+|.++++.
T Consensus 49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at 127 (599)
T PF06609_consen 49 FSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT 127 (599)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence 3344444455555556778889999985 468889999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHH
Q 014820 110 SPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSF 189 (418)
Q Consensus 110 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~ 189 (418)
++|...++++..+.|+|.|........++|..|.|.|+...++...........++.++..+..+.+|||.|++..+...
T Consensus 128 A~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~ 207 (599)
T PF06609_consen 128 AQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSG 207 (599)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHH
Confidence 99999999999999999888765666789999999999888877766666666788888877777899999999888766
Q ss_pred HHHHHHhhccCchhHHHhhcC---hHHHHHHHHHHHH-------------h--cC-CCCCCCcccccCCCCCCCCCCCcc
Q 014820 190 ILLAFLGFQPESPRYLCLKGR---TAEAHRALEKIAQ-------------V--NK-TKLPNGKLVARRSTLPTGERAPPE 250 (418)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------------~--~~-~~~~~~~~~~~~~~~~~~~~~~~~ 250 (418)
+.++..+++...|++...+++ .++..+.++.+.. . .. ...+++...... ..-. .--
T Consensus 208 i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa--~lvi---G~~ 282 (599)
T PF06609_consen 208 IALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIA--PLVI---GFV 282 (599)
T ss_pred HHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchh--hHHH---HHH
Confidence 654433332222332222221 1222222222110 0 01 111221110000 0000 000
Q ss_pred chhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCC--
Q 014820 251 LVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQD-- 328 (418)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 328 (418)
.....- .=|.....+++..+ .++++++ |.+....+..+.....+|+...+.|...... ++.+.
T Consensus 283 ~Lv~F~--~wE~~~~~~~Pl~P-~~Lf~~~--r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~v----------f~~d~~~ 347 (599)
T PF06609_consen 283 LLVAFV--VWEWFGAPKDPLFP-HRLFKDR--RGFAALLVISFISGMNFFSVNILWPQQVVNV----------FGSDPIS 347 (599)
T ss_pred HHHHHH--HhhhhccCCCCcCC-HHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------ccCCCcc
Confidence 000000 00000000011112 2344431 3445555566666667777776666554211 11222
Q ss_pred -hhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHH-HHHHHHHHHHHHHHHHh--hchhHHHHHHHHHHHHHHHhhhHhHh
Q 014820 329 -ANLYIDEFITSLAEIPGLLLAAILVDTAGRKLS-ITIMFTLSCLFLLPLVT--YQSNILTTGLLFGARMCVMGAFTVSL 404 (418)
Q Consensus 329 -~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~-l~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (418)
...+......+++..+|..+.|.+..+++|-|. ++++..++.+++.+++. ..+....+...++.+++.++......
T Consensus 348 ~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~ 427 (599)
T PF06609_consen 348 ITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAI 427 (599)
T ss_pred cceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHH
Confidence 244566667778888889999999998887544 45666666655555544 33333455677788888888777777
Q ss_pred hhhcccccccc
Q 014820 405 IYAAEVKLMTL 415 (418)
Q Consensus 405 ~~~~e~~p~~~ 415 (418)
..+.-..|++.
T Consensus 428 ~~~ql~~p~~~ 438 (599)
T PF06609_consen 428 VIAQLIVPDED 438 (599)
T ss_pred HeeEeeeCchH
Confidence 77777777654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=176.59 Aligned_cols=310 Identities=15% Similarity=0.057 Sum_probs=201.8
Q ss_pred CcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHH
Q 014820 58 SSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWF 137 (418)
Q Consensus 58 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 137 (418)
+..-.|.+.|.+.++.++.++.+|.++||+|||.++++|.+..++...+.+.+.|+..++++|++.|+..|...+..+++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAii 145 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAII 145 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHH
Confidence 44557999999999999999999999999999999999999999999999999999777777999999999999999999
Q ss_pred HhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc-C-cchHHHHHHh----HHHHHH-HHHHHhhccCchhHHHhhcC
Q 014820 138 LEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-R-LDWRWLLGLS----SIPSFI-LLAFLGFQPESPRYLCLKGR 210 (418)
Q Consensus 138 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~-~~w~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~ 210 (418)
+|.+++++|+++++....+.++|.++||.+++++.. . ..-+++|... .++... .....+++||+-+. +++
T Consensus 146 sdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~---rk~ 222 (451)
T KOG2615|consen 146 SDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPL---RKR 222 (451)
T ss_pred HhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccc---hhh
Confidence 999999999999999999999999999999999876 1 1112222221 222222 23445677887321 111
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhc-hhhHH--HHH-
Q 014820 211 TAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS-SKLAR--TTI- 286 (418)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~--~~~- 286 (418)
.++..+.. +..+ .+++.. +..........+ ++... ..+
T Consensus 223 ~~~~~~~~-~~~~---------------------------~~~~~~----------~~~~~~~v~~lrn~p~~~~i~~~~ 264 (451)
T KOG2615|consen 223 NDEHSTLQ-EAAD---------------------------DRLALL----------KFARIFKVAALRNPPLLDFISVLR 264 (451)
T ss_pred cccccchh-hhhh---------------------------hhhhhc----------chhhhhhhhhhcCccccchHHHHH
Confidence 11000000 0000 000000 000000001111 11111 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhc--hhHHHHH
Q 014820 287 LLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAG--RKLSITI 364 (418)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~g--rr~~l~~ 364 (418)
...+..+.....+-........+. .+.+++++.+.+-.....++...+....-....||.+ -+-.+..
T Consensus 265 i~~l~~~ly~~l~s~~~~t~~~l~----------~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~ 334 (451)
T KOG2615|consen 265 IFGLHYFLYLELFSGLENTVLFLT----------HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLF 334 (451)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhh----------cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHH
Confidence 111112222222222222222221 2346789999888888888877777777777777765 4445555
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhccccccccccC
Q 014820 365 MFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFTV 418 (418)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~ 418 (418)
+..++.-.++.+..........+...+..+......+....+.....|.+.||.
T Consensus 335 ~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~ 388 (451)
T KOG2615|consen 335 SLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGT 388 (451)
T ss_pred HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchH
Confidence 555555566666666666666777777777777788889999999999999873
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=186.98 Aligned_cols=326 Identities=15% Similarity=0.022 Sum_probs=242.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHH
Q 014820 26 VLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL 105 (418)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 105 (418)
.+..++++.+....+..+.....+.+..+..-|+...+++..+..+...+.++++|.++||++|||+++.+.++.++..+
T Consensus 11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~ 90 (524)
T PF05977_consen 11 NFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVAL 90 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 33344455556666666666667777777777888999999999999999999999999999999999998887766554
Q ss_pred HHhhh-----hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHH
Q 014820 106 LSSFS-----PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRW 179 (418)
Q Consensus 106 ~~~~~-----~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~ 179 (418)
+.++. .+.+.+++.-++.|++.+.. |...+.+.|..|+++...+.++.+...++..++||.+++.+....|-.+
T Consensus 91 ~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~ 170 (524)
T PF05977_consen 91 LLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAA 170 (524)
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 44332 47889999999999999998 8888999999999999999999999999999999999999988888888
Q ss_pred HHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCC
Q 014820 180 LLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNG 259 (418)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (418)
+|.+.++..++.+......+..++. ++..+| +..
T Consensus 171 ~f~inalsfl~~i~~l~~~~~~~~~---~~~~~e--~~~----------------------------------------- 204 (524)
T PF05977_consen 171 AFLINALSFLISILALLRWKPPPPP---SSLPRE--RFF----------------------------------------- 204 (524)
T ss_pred HHHHHHHHHHHHHHHHHHccccccc---cccchh--hhh-----------------------------------------
Confidence 8888776655544443333322110 000000 000
Q ss_pred CCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHH
Q 014820 260 GNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITS 339 (418)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (418)
+.-+..++.+.+++..+..+.....+......++ ..+|.+..+. .+.++...++.....+
T Consensus 205 -------~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~---aLlPl~a~~~----------l~~~a~~yGll~a~~g 264 (524)
T PF05977_consen 205 -------SALREGLRYVRSSPPLRSVLLRSFLFNLFASAVW---ALLPLFARDV----------LGGGASGYGLLLAAFG 264 (524)
T ss_pred -------hhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHH---HhhhHHHHHH----------hCCcHHHHHHHHHHHH
Confidence 0112245555555444444443333332222222 2344443221 2577788889999999
Q ss_pred hhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 340 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 340 ~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
++.++|.++.+++.+|+++++.+..+.++.+++++.+++..+.+...+..++.|++.........+...+..|+++||
T Consensus 265 vGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~G 342 (524)
T PF05977_consen 265 VGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRG 342 (524)
T ss_pred HHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHh
Confidence 999999999999999999999988999999998888888888888888888888888888888899999999999987
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-22 Score=185.29 Aligned_cols=317 Identities=11% Similarity=-0.040 Sum_probs=198.7
Q ss_pred HHHHHHHHHH-HhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcc-hHHHHHHHHHHHHHHHHHhhhhh
Q 014820 35 VAEAMEIMIL-SFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGR-RMGFLGEALVTAGAGLLSSFSPN 112 (418)
Q Consensus 35 ~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~~~~~~ 112 (418)
+..+...... ++..+.+.+++|++..+.|++.+++.++..+++++.|.++||+|| |+++.++.++.+++..+..+.++
T Consensus 12 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~ 91 (418)
T TIGR00889 12 FLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTT 91 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333333 566677778899999999999999999999999999999999965 77888888888888888888899
Q ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHH----H----hhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHH
Q 014820 113 YITLITLRCLVGVGLGSG-HVFLSWF----L----EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGL 183 (418)
Q Consensus 113 ~~~l~~~r~l~G~~~g~~-~~~~~~~----~----~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~ 183 (418)
++.+++.|++.|++.+.. +...+.. . |......|.+..| .+|.+++|.+++.+.....|+ +|++
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~ 164 (418)
T TIGR00889 92 PAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYI 164 (418)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHH
Confidence 999999999999987655 4444332 2 2222334445444 367888888888774333455 3555
Q ss_pred hHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCc
Q 014820 184 SSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKT 263 (418)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (418)
.++..++..+..+.+||+|+. +++.++..+
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~---~~~~~~~~~----------------------------------------------- 194 (418)
T TIGR00889 165 TAGSSALLGVFALTLPDIPVA---KSTAKMSIK----------------------------------------------- 194 (418)
T ss_pred HHHHHHHHHHHHhcCCCCCCC---ccccccCHH-----------------------------------------------
Confidence 555555554445567775421 000000000
Q ss_pred ccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhh
Q 014820 264 TEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEI 343 (418)
Q Consensus 264 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (418)
+....+.+++++++....+.+.. +...........+.+.+.++.+.. .....+.+....+....+..+..+
T Consensus 195 ---~~~~~~~~~~~k~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~g~~~~~~~i~~i 265 (418)
T TIGR00889 195 ---VMLGLDAFILFKNKRMAIFFFFS---MLLGAPLQITNIFGNGFLHEFGRN---PEFADSFVVKNASIWMSLSQFSEI 265 (418)
T ss_pred ---HHhhhhHHHHhcCCCeeeHHHHH---HHHHhHHHHHHHhHHHHHHHhccc---ccccchhhhhhHHHHHHHHHHHHH
Confidence 00001223344433222222222 211222222223334444322100 000001223555777778888899
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc-h---hHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 344 PGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-S---NILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 344 ~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
++.+..|++.||+|||+.+..+.++.+++..++.... + .+..++..++.+++.+...+....++.|.+|++.|+
T Consensus 266 ~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g 343 (418)
T TIGR00889 266 FFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRA 343 (418)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 9999999999999999999999998888776665522 1 233444566677777777788888999999998876
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.5e-22 Score=187.72 Aligned_cols=173 Identities=15% Similarity=0.024 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhh-hcchHHHHHHHHHHHHH
Q 014820 26 VLAYAGLGWVAEAMEIMILS-FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YGRRMGFLGEALVTAGA 103 (418)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~ 103 (418)
.+..+++..+......+... ....++.+++|++.++.+++.+.+.....+..+++|+++|| +||||+++.+.++++++
T Consensus 15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g 94 (489)
T PRK10207 15 PFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIG 94 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHH
Confidence 34444444555555555444 44456678899999999999999998888999999999999 99999999999999999
Q ss_pred HHHHhhhhhHHH-HHHHHHHHHhhhhhh-HHHHHHHHhhcCCC--CchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHH
Q 014820 104 GLLSSFSPNYIT-LITLRCLVGVGLGSG-HVFLSWFLEFVPPS--NRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRW 179 (418)
Q Consensus 104 ~~~~~~~~~~~~-l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~ 179 (418)
.+++.++.+... ++++|+++|+|.|.. +...+++.|.+|++ +|+++.+++..+.++|..++|.+++++.++.|||+
T Consensus 95 ~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~ 174 (489)
T PRK10207 95 YFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSV 174 (489)
T ss_pred HHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHH
Confidence 999998876444 558899999999998 88888999999887 45889999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhhc
Q 014820 180 LLGLSSIPSFILLAFLGFQ 198 (418)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~ 198 (418)
.|++.++..++.++.+...
T Consensus 175 ~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 175 TYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9988655333333333333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-21 Score=166.77 Aligned_cols=314 Identities=18% Similarity=0.131 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHH
Q 014820 24 CFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGA 103 (418)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 103 (418)
+..+..+.+..+..-......+++++.+.+++|+|.+.+|++.++..+...+.+++..++.+|+|.++.+..++++.+++
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44444455555555666788889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCc-chHHHH
Q 014820 104 GLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL-DWRWLL 181 (418)
Q Consensus 104 ~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~w~~~~ 181 (418)
..+-... +.+.++.+-.+.|++.+.. ...+..+-+.+| |+-+..+|+|....++|..+++.+...+.++. +||...
T Consensus 91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL 168 (395)
T COG2807 91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL 168 (395)
T ss_pred HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence 9999888 7888889999999999998 455668888887 67899999999999999999999998888776 799999
Q ss_pred HHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCC
Q 014820 182 GLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGN 261 (418)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (418)
.+.+.++++.++.++--. .+ ++... .
T Consensus 169 ~~WAl~allAl~~WlPq~--~r-----~~~~~----------~------------------------------------- 194 (395)
T COG2807 169 GFWALLALLALLIWLPQA--LR-----EQAAS----------I------------------------------------- 194 (395)
T ss_pred HHHHHHHHHHHHHHhhhc--cc-----ccccc----------c-------------------------------------
Confidence 999999888877665321 11 00000 0
Q ss_pred CcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhh
Q 014820 262 KTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLA 341 (418)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (418)
+.+..+...++++ +..|.+.+.+..++..+|....|+|.+..|.| .|+.+++....+..+.
T Consensus 195 -----~~~~~~~~~vw~~---~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G-----------~sa~~aG~llsl~~l~ 255 (395)
T COG2807 195 -----ATKLVSVRKVWRS---PLAWQVTLFMGLQSLLYYIVIGWLPAILIDRG-----------LSAAEAGSLLSLMQLA 255 (395)
T ss_pred -----ccccccccccccC---chhHHHHHHHHhhHHHHHHHHHHHHHHHHHcC-----------CCHHHhhhHHHHHHHH
Confidence 0000011223443 44566667777899999999999999997765 9999999999999999
Q ss_pred hhHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHhhhHhHhhhhccccccc
Q 014820 342 EIPGLLLAAILVDTA-GRKLSITIMFTLSCLFLLPLVTYQS-NILTTGLLFGARMCVMGAFTVSLIYAAEVKLMT 414 (418)
Q Consensus 342 ~~~g~~~~g~l~d~~-grr~~l~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 414 (418)
+++..+....+.+|. ++|+..+....++.++.+-+.+.+. ....+ .++.|++.++.+|.....+....++.
T Consensus 256 ~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a 328 (395)
T COG2807 256 QLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW--ALLLGLGQGGAFPLALTLILLRSSDA 328 (395)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH--HHHHhCccchHHHHHHHHHHhhcCCh
Confidence 999999999999975 5667767677777777766655332 22222 58888889999998888877666544
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=184.57 Aligned_cols=299 Identities=14% Similarity=0.009 Sum_probs=202.2
Q ss_pred hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhh----hcchH-HHHHHHHHHHHHHHHHhhhhh------HH
Q 014820 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN----YGRRM-GFLGEALVTAGAGLLSSFSPN------YI 114 (418)
Q Consensus 46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~------~~ 114 (418)
...+.+.+++|+++.++|++.++..+..++..|+.|+++|| +|||| .++.+....+++.+++...++ ..
T Consensus 21 ~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~ 100 (437)
T TIGR00792 21 YLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLV 100 (437)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHH
Confidence 45566778899999999999999999999999999999997 68855 566777888877777666543 45
Q ss_pred HHHHHHHHHHhhhhhh-HHHHHHHHhhc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHhh-------cCcchHHHHHHhH
Q 014820 115 TLITLRCLVGVGLGSG-HVFLSWFLEFV-PPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM-------PRLDWRWLLGLSS 185 (418)
Q Consensus 115 ~l~~~r~l~G~~~g~~-~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-------~~~~w~~~~~~~~ 185 (418)
.+++.+++.+++.+.. .+..++..|.. ++++|++..++.+.+..+|..+++.+.+.+. +..+||..+.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~ 180 (437)
T TIGR00792 101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLA 180 (437)
T ss_pred HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHH
Confidence 6667788888888877 55567778877 5689999999999888888877766554443 2468999998888
Q ss_pred HHHHHHHHH-HhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcc
Q 014820 186 IPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT 264 (418)
Q Consensus 186 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (418)
++.++..+. .+..+|+++. +.++ ++
T Consensus 181 ~l~~~~~~~~~~~~~e~~~~-----~~~~-------------------------------------------------~~ 206 (437)
T TIGR00792 181 LIGVVSLIICFFGTKERYSE-----IPKN-------------------------------------------------IE 206 (437)
T ss_pred HHHHHHHHHHHcCCEecCCC-----CCcc-------------------------------------------------cc
Confidence 877766444 3445543210 0000 00
Q ss_pred cccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhH
Q 014820 265 EGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIP 344 (418)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (418)
++.+..+.++.+++++..+.. ....+.....++....+.+.+.... .+ ++........+..++.++
T Consensus 207 ~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~i~~ii 272 (437)
T TIGR00792 207 KKLSLKQIFKALFKNDQLLIL---CLAYLFYNLAFNIKNGVQVYYFTYV----------LG-DPELFSYMGSIAIVAGLI 272 (437)
T ss_pred cCCCHHHHHHHHhCCHHHHHH---HHHHHHHHHHHHHHcchhheeEeee----------cC-ChHHHHHHHHHHHHHHHH
Confidence 001123356666665433322 2222323333333333333333111 12 234445555666888899
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHhhhHhHhhhhccccc
Q 014820 345 GLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEVKL 412 (418)
Q Consensus 345 g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 412 (418)
+.++.++++||+|+|+.+..+..+.+++.+.+.+.. +.+...+..++.+++.+...+..+++.+|..|
T Consensus 273 ~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 341 (437)
T TIGR00792 273 GVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVD 341 (437)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999988888877776665532 33445555667777788888889999998876
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=181.20 Aligned_cols=162 Identities=15% Similarity=0.024 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHhhh-hhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhh-hcchHHHHHHHHHHHHHHHHH
Q 014820 30 AGLGWVAEAMEIMILSFVG-PTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YGRRMGFLGEALVTAGAGLLS 107 (418)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~ 107 (418)
+++..+......+...... .++.+++|++.++.+++.+.+........+++|+++|| +|||+.++.+.++.+++..++
T Consensus 26 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~ 105 (500)
T PRK09584 26 IFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALV 105 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444 45568899999999998888776666777899999999 599999999999999998888
Q ss_pred hhhh-hHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCC--chhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHH
Q 014820 108 SFSP-NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN--RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGL 183 (418)
Q Consensus 108 ~~~~-~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~ 183 (418)
++++ +.+.+++.|++.|++.|.. +...+++.|++|+++ |..+.++++.+.++|..++|.+++++.++.|||+.|.+
T Consensus 106 ~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i 185 (500)
T PRK09584 106 AWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFAL 185 (500)
T ss_pred HHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 8874 5667778899999999987 777789999998654 45678889999999999999999999999999999998
Q ss_pred hHHHHHHH
Q 014820 184 SSIPSFIL 191 (418)
Q Consensus 184 ~~~~~~~~ 191 (418)
.++..++.
T Consensus 186 ~~i~~~i~ 193 (500)
T PRK09584 186 SVVGMLIT 193 (500)
T ss_pred HHHHHHHH
Confidence 77554443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-22 Score=175.15 Aligned_cols=286 Identities=16% Similarity=0.032 Sum_probs=204.1
Q ss_pred hcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HH
Q 014820 54 EWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HV 132 (418)
Q Consensus 54 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~ 132 (418)
+.+-+++++|++.+...+...+.+++.|.+.||+|+|-.+++|++.+..+++++++.+++++++++|.++|+|.++. ..
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ts 179 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTS 179 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhh
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999998 77
Q ss_pred HHHHHHhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcCh
Q 014820 133 FLSWFLEFVPPSN-RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRT 211 (418)
Q Consensus 133 ~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (418)
..+++++.+|+++ |++++|+...+.++|..+||++++.+.+..|.+.+|.+.+++.++-..+.+++-|..+ .+.
T Consensus 180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~-----~~~ 254 (464)
T KOG3764|consen 180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE-----MDP 254 (464)
T ss_pred hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc-----cCc
Confidence 8899999999764 7999999999999999999999999999999999999999999887666555433211 000
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhhHH-HHHHHHH
Q 014820 212 AEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLAR-TTILLWL 290 (418)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~ 290 (418)
+ +.+...++.++++.++.. .......
T Consensus 255 ~-----------------------------------------------------~~~~~~~~~~Ll~dP~I~~~agai~~ 281 (464)
T KOG3764|consen 255 D-----------------------------------------------------STEQGTPMWSLLMDPYILLIAGAITF 281 (464)
T ss_pred c-----------------------------------------------------ccccCccHHHHHhCchHhhhhcchhh
Confidence 0 001112444555543311 1111122
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhc--hhHHHHHHHHH
Q 014820 291 LLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAG--RKLSITIMFTL 368 (418)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~g--rr~~l~~~~~~ 368 (418)
+.....+.--.+..|... ....+.-+.++......+...++..+.|.+.||++ |......+.+.
T Consensus 282 ~n~~lafLePtlslwm~e--------------~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~ 347 (464)
T KOG3764|consen 282 SNSSLAFLEPTLSLWMLE--------------TMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLAT 347 (464)
T ss_pred ccchHHHhCcccHHHHHH--------------hccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHH
Confidence 222223333333333332 22333336777777888999999999999999999 54444556666
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccc
Q 014820 369 SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVK 411 (418)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 411 (418)
.+++.....+.++...+++..+..+++.+...+.......++.
T Consensus 348 ~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lv 390 (464)
T KOG3764|consen 348 VGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLV 390 (464)
T ss_pred HHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhc
Confidence 6666666666666555555555555544444433333333333
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-19 Score=168.30 Aligned_cols=320 Identities=11% Similarity=-0.085 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHH--HHHHHHHHHHHHhHH-HHhhhhhcchHHHHHHHHHH-HH
Q 014820 27 LAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLI--TTSVFAGLVVGAYAW-GLVADNYGRRMGFLGEALVT-AG 102 (418)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~s~~~~~~~i~~~~~-g~l~dr~Grr~~~~~~~~~~-~~ 102 (418)
...+...++.++.......+..|.+.++.|.|.++.|++ .++..+...+.+|+. ++..||+||||.+++...+. +.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence 445566778889988889999999999999999999997 466688888888888 45799999999876555332 22
Q ss_pred HHHHHh---hhhh-HHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcch
Q 014820 103 AGLLSS---FSPN-YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDW 177 (418)
Q Consensus 103 ~~~~~~---~~~~-~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w 177 (418)
...... ...+ ...++...++.++..+.. +....+..|..++++++...+....+..+|..+++.+.+++.++.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw 162 (390)
T TIGR02718 83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ 162 (390)
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 222222 2222 223334444455555555 66667888999988889999999999999999999998899888999
Q ss_pred HHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhccc
Q 014820 178 RWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSS 257 (418)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (418)
|.+|++.+++.++..+..++++|+++. +++.+
T Consensus 163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~--------------------------------------------- 194 (390)
T TIGR02718 163 RPAFLLVACVPLASLVCVLWLKDRAVA---SPEAP--------------------------------------------- 194 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccc---------------------------------------------
Confidence 999999988877665554444433210 00000
Q ss_pred CCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHH
Q 014820 258 NGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFI 337 (418)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (418)
++...+++++++++..+......+.... .......+.+.+..+. +.++.+.+.....
T Consensus 195 ---------~~~~~~~~~~l~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~l~~~-----------G~s~~~ig~~~~~ 251 (390)
T TIGR02718 195 ---------LARRASLFRFFRRPLAWSLLALALLSAM---TAVSGFGLSKLYLVDA-----------GWPLEWIGRLGMA 251 (390)
T ss_pred ---------hhhHHHHHHHHcCcCHHHHHHHHHHHHH---HHHHHHHHhhHHHHhc-----------CCCHHHHHHHHhH
Confidence 0001234556665443333333333322 2222233445555433 5788888887766
Q ss_pred HHh-hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh-h-----chhHHHHHHHHHHHHHHHhhhHhHhhhhccc
Q 014820 338 TSL-AEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-Y-----QSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410 (418)
Q Consensus 338 ~~~-~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 410 (418)
.++ ..+++.+++|++.||+|+|+.+..+..+.++..+.... . ...........+.++..+...+..+....+.
T Consensus 252 ~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 331 (390)
T TIGR02718 252 GGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRF 331 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 56678899999999999999988777665333222221 1 1112222223333444566666666666666
Q ss_pred ccc-cccc
Q 014820 411 KLM-TLFT 417 (418)
Q Consensus 411 ~p~-~~R~ 417 (418)
.++ +.|+
T Consensus 332 ~~~~~~~g 339 (390)
T TIGR02718 332 AGDGDQAG 339 (390)
T ss_pred hCcccchH
Confidence 655 5544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-18 Score=163.85 Aligned_cols=330 Identities=14% Similarity=0.058 Sum_probs=206.9
Q ss_pred HHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhh----hhcchHHHHHH-HHHHHHHHHHHhhhhh
Q 014820 38 AMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD----NYGRRMGFLGE-ALVTAGAGLLSSFSPN 112 (418)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~~~~~-~~~~~~~~~~~~~~~~ 112 (418)
.+.........+.+.+++|.+....+++..+..+...+.+|+.|+++| |+||||+++++ .+..+++.++.+++++
T Consensus 17 q~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~ 96 (477)
T TIGR01301 17 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAAD 96 (477)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCch
Confidence 444555556666678899999999999999999999999999999999 59999998874 6666666677777665
Q ss_pred HH-----------------HHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHh-
Q 014820 113 YI-----------------TLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNR--GMWMVIFSSFWTIGSVSEAIGAWII- 171 (418)
Q Consensus 113 ~~-----------------~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~l- 171 (418)
.+ .++++-.+..++.... .+..++++|..|+++| +.+.++.+...++|.++++.+++..
T Consensus 97 ~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~ 176 (477)
T TIGR01301 97 IGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSG 176 (477)
T ss_pred hhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 42 2223333444566666 6667899999998865 6899999999999999999998764
Q ss_pred -hcC-------------cchHHHHHHhHHHHHHHHH-HHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccc
Q 014820 172 -MPR-------------LDWRWLLGLSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVA 236 (418)
Q Consensus 172 -~~~-------------~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (418)
.+. .+.|..|++.++..++..+ ..+..+|.|... .++..+ ++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~-----~~~~~~--~~~--------------- 234 (477)
T TIGR01301 177 LYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG-----SDDFIN--SEA--------------- 234 (477)
T ss_pred HHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc-----cccchh--hhc---------------
Confidence 111 1568889887777666644 455577764210 000000 000
Q ss_pred cCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 014820 237 RRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSS--KLARTTILLWLLLFGNSFAYYAVVLLISELSSLDT 314 (418)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (418)
++. ++. +....++++++. ..-+.+...+..++...+.++....+..++..+.-
T Consensus 235 ------~~~----------------~~~---~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v 289 (477)
T TIGR01301 235 ------APP----------------SKH---GEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREV 289 (477)
T ss_pred ------ccc----------------ccc---chhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 000 000 000122333321 11134445555555555555555555444432110
Q ss_pred cccCCCc-cCCCCCC--hhHHHHHHHHHhhhhHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHHhhch---------
Q 014820 315 RCRSPLM-FSHHPQD--ANLYIDEFITSLAEIPGLLLAAILVDTAGR-KLSITIMFTLSCLFLLPLVTYQS--------- 381 (418)
Q Consensus 315 ~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~g~~~~g~l~d~~gr-r~~l~~~~~~~~~~~~~l~~~~~--------- 381 (418)
+..+. ....+++ ....+.....++...+.+++..++.+|+|+ |+...++.++.+++++...+..+
T Consensus 290 --~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~ 367 (477)
T TIGR01301 290 --YGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYD 367 (477)
T ss_pred --cCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence 00000 0000000 012334445556656777788889999985 66768888888888777765321
Q ss_pred ------------hHHHHHHHHHHHHHHHhhhHhHhhhhccccccccc
Q 014820 382 ------------NILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLF 416 (418)
Q Consensus 382 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R 416 (418)
.+...+.....|+......+++++++++..|++.|
T Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~ 414 (477)
T TIGR01301 368 GDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGA 414 (477)
T ss_pred ccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCC
Confidence 25566677788888899999999999999996544
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-18 Score=160.51 Aligned_cols=164 Identities=15% Similarity=0.105 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhh-cchHHHHHHHHHHHHHHHHH
Q 014820 30 AGLGWVAEAMEIMILSFVGPTV-KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY-GRRMGFLGEALVTAGAGLLS 107 (418)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~ 107 (418)
++...+......+.+...+|.+ .+++|++..+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++.
T Consensus 14 l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll 93 (493)
T PRK15462 14 VVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVL 93 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555544 567899999999999999999999999999999999 99999999999999988766
Q ss_pred hhhh-hHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCC--CchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHH
Q 014820 108 SFSP-NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPS--NRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGL 183 (418)
Q Consensus 108 ~~~~-~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~ 183 (418)
...+ +...+++...+.+++.|.. +...++++|.+|++ +|..+.++...+.++|..++|.+.+++.+.+||++.|.+
T Consensus 94 ~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~i 173 (493)
T PRK15462 94 GASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGL 173 (493)
T ss_pred HHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHH
Confidence 6543 2233444444555667766 66678899999976 799999999999999999999999999998999999988
Q ss_pred hHHHHHHHHH
Q 014820 184 SSIPSFILLA 193 (418)
Q Consensus 184 ~~~~~~~~~~ 193 (418)
.++..++.++
T Consensus 174 aaigm~l~li 183 (493)
T PRK15462 174 AAVGMIAGLV 183 (493)
T ss_pred HHHHHHHHHH
Confidence 7654444333
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.2e-18 Score=159.89 Aligned_cols=296 Identities=12% Similarity=0.005 Sum_probs=186.3
Q ss_pred hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhh----hcchHHH-HHHHHHHHHHHHHHhhhh------hHH
Q 014820 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN----YGRRMGF-LGEALVTAGAGLLSSFSP------NYI 114 (418)
Q Consensus 46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~~-~~~~~~~~~~~~~~~~~~------~~~ 114 (418)
.+..++.+++|+|..++|.+.++..+..++..|+.|+++|| +||||.+ +.+.+..+++.++....+ ..+
T Consensus 31 ~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~ 110 (444)
T PRK09669 31 FLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKII 110 (444)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence 44566778899999999999999999999999999999998 7886654 456666666665444333 245
Q ss_pred HHHHHHHHHHhhhhhh-HHHHHHHHhhc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc-------CcchHHHHHHhH
Q 014820 115 TLITLRCLVGVGLGSG-HVFLSWFLEFV-PPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-------RLDWRWLLGLSS 185 (418)
Q Consensus 115 ~l~~~r~l~G~~~g~~-~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~w~~~~~~~~ 185 (418)
.+++..++.+.+.... .+..++.+|+. ++++|++..+....+..+|..+++.+...+.. ..+|+..+.+.+
T Consensus 111 ~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ 190 (444)
T PRK09669 111 YACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMG 190 (444)
T ss_pred HHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence 5566666777766665 44557888987 56889998888888888877776654433221 347888777777
Q ss_pred HHHHHHHHHHh-hccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcc
Q 014820 186 IPSFILLAFLG-FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT 264 (418)
Q Consensus 186 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (418)
++.++..+..+ ..+|.++. + + +
T Consensus 191 ii~~v~~~~~~~~~~e~~~~----~---~--------------------------------------------------~ 213 (444)
T PRK09669 191 LLGVVLFFCCFFMTKERYTP----E---V--------------------------------------------------D 213 (444)
T ss_pred HHHHHHHHHHhCCeEEecCC----C---C--------------------------------------------------c
Confidence 76665544332 23332110 0 0 0
Q ss_pred cccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhH
Q 014820 265 EGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIP 344 (418)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (418)
++.+...+++.+++++.++......+..........+. ...+.... .+ .+...........+..++
T Consensus 214 ~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~---~~y~~~~~----------~~-~~~~~~~~~~~~~i~~ii 279 (444)
T PRK09669 214 NSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGA---TLYYVNYV----------LL-RPDLATLFLVTGMIAGLF 279 (444)
T ss_pred CCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhh---hheeeeee----------cC-CHHHHHHHHHHHHHHHHH
Confidence 00122346677777665554433333222111111111 11111100 01 222233344455577788
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh--hchhHHHHHHHHHHHHHHHhhhHhHhhhhccccc
Q 014820 345 GLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--YQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKL 412 (418)
Q Consensus 345 g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 412 (418)
+.++.++++||+|+|+....+..+.+++.+.+.+ ..+.+...+..++.+++.+...+..+++.+|..+
T Consensus 280 ~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d 349 (444)
T PRK09669 280 GALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVD 349 (444)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 8899999999999999988877665544333322 3344455666677888888888999999999886
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-16 Score=148.61 Aligned_cols=315 Identities=17% Similarity=0.121 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhc-chHHHHHHHHHHHHHHHHHhhhhh
Q 014820 34 WVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYG-RRMGFLGEALVTAGAGLLSSFSPN 112 (418)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~~~~~~~~~~~~~~~~~~~~~ 112 (418)
++..+.......+..+.+.++.|+|..|+|.+.++..+...++++++|.++||.+ +||.+.+..++.++........++
T Consensus 11 ~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~ 90 (400)
T PF03825_consen 11 YFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSS 90 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444555666778888999999999999999999999999999999999986 577777777777777777777888
Q ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHH-HHHhhcCc---chHHHHHHhHHH
Q 014820 113 YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIG-AWIIMPRL---DWRWLLGLSSIP 187 (418)
Q Consensus 113 ~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~---~w~~~~~~~~~~ 187 (418)
++.+++..++..+..... +...++..+... +++.-.|-.....++|-+++... +..+.... +....+++.+..
T Consensus 91 f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 168 (400)
T PF03825_consen 91 FWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAIL 168 (400)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHH
Confidence 988888888888777665 666676666664 34444555556666666655433 22222222 223345555555
Q ss_pred HHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCccccc
Q 014820 188 SFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGK 267 (418)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (418)
.++.....+.+|+.|.. ++.++ +.++
T Consensus 169 ~~ll~~~~l~lp~~~~~----~~~~~--------------------------------------------------~~~~ 194 (400)
T PF03825_consen 169 SLLLAGFALFLPKTPPK----RSAKE--------------------------------------------------SVKK 194 (400)
T ss_pred HHHHHHHHHhCCCCccc----cccCC--------------------------------------------------Cccc
Confidence 55444445566766520 00000 0001
Q ss_pred chhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHH
Q 014820 268 SGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLL 347 (418)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 347 (418)
....+..+++|++....+++..+........+| .+.+.+.++.+ +.+....+....+..+++++.-.
T Consensus 195 ~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~---~f~~~yl~~~g----------g~~~~~~g~~~~l~~~aEi~~f~ 261 (400)
T PF03825_consen 195 LLGLDALKLLKNPRFLVFLLAAFLIGISHAAYY---TFFSIYLQELG----------GYSGSTIGILWALGVVAEIPFFF 261 (400)
T ss_pred ccchHHHHHhcCccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHcc----------cchhhHHHHHHHHHHHHHHHHHH
Confidence 111133456655433333333332222222222 23333443332 24555666666777888999999
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHH----HHHHHHHhhhHhHhhhhcccccccccc
Q 014820 348 LAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-QSNILTTGLLF----GARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 348 ~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
..+++..|+|.++++.++.+..++=..+++.. ++.+..+.... +-|..++..+.....++.+..|++.|+
T Consensus 262 ~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~a 336 (400)
T PF03825_consen 262 FSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRA 336 (400)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchH
Confidence 99999999999999999999999988888775 44443333333 468888888889999999999999985
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.2e-18 Score=161.12 Aligned_cols=341 Identities=11% Similarity=0.004 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhc-----chHHHHHHHH
Q 014820 24 CFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYG-----RRMGFLGEAL 98 (418)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~~~~~~~ 98 (418)
...+.++...++..+..........+.+.+++|+|.++.+...+...+...+-.+ +|.++||++ ||+.++++.+
T Consensus 25 ~~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~ 103 (468)
T TIGR00788 25 RVVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGL 103 (468)
T ss_pred chHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHH
Confidence 3445555566778888744444566777778999999999999999999999655 999999997 6777777776
Q ss_pred HH-HHHHHHHhhhhhHHHHH-HHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHH---HHHHHHHHHHHHHHHHHHHHhh
Q 014820 99 VT-AGAGLLSSFSPNYITLI-TLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWM---VIFSSFWTIGSVSEAIGAWIIM 172 (418)
Q Consensus 99 ~~-~~~~~~~~~~~~~~~l~-~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~g~~~~~~~~~~l~ 172 (418)
+. +++....+..++..... +..++.+++.+.. .+...+..|..+ +++.... +.......+|.++++.+++.+.
T Consensus 104 l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~ 182 (468)
T TIGR00788 104 LGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL 182 (468)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 66 34434444445544444 4788999998888 777889999988 5554433 3333444589999999999999
Q ss_pred cCcchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccch
Q 014820 173 PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELV 252 (418)
Q Consensus 173 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (418)
+..+|+..|++.+++.++..+...+++|++.....+.+.++. ....... .
T Consensus 183 ~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~-~~~~~~~----------------------------~- 232 (468)
T TIGR00788 183 DKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLE-MNMALLT----------------------------L- 232 (468)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccch-hhhhhhh----------------------------h-
Confidence 889999999988887777655566777753100000000000 0000000 0
Q ss_pred hhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHH
Q 014820 253 HLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLY 332 (418)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (418)
......++...+....++++..+..++..+. . +......... ......+..+.++...+
T Consensus 233 --------~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl---~---~~~~~~~~~~-------~f~~~~~~lG~s~~~~G 291 (468)
T TIGR00788 233 --------GVLANVKVQILGLRGAIQLLEIAKPLIFIFL---S---YANLPGASGS-------VFCATTQCLPGGPSFSG 291 (468)
T ss_pred --------hHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH---H---HhhcCCCCce-------eEEEEcccCCCCcchhh
Confidence 0000000011122223333222221111111 0 0000000000 00011134578999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh----------hchhHHHHHHHHHHHHHHHhhhHh
Q 014820 333 IDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----------YQSNILTTGLLFGARMCVMGAFTV 402 (418)
Q Consensus 333 ~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 402 (418)
......+++.+++..+.+++.+|++.|+++.++.++.+++.+.... ..+.+......++.++..+..+..
T Consensus 292 ~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~ 371 (468)
T TIGR00788 292 MSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMP 371 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999998888887655431 122223444455666666777777
Q ss_pred Hhhhhcccccccccc
Q 014820 403 SLIYAAEVKLMTLFT 417 (418)
Q Consensus 403 ~~~~~~e~~p~~~R~ 417 (418)
...++.+..|++.+|
T Consensus 372 ~~~~~~~~~p~~~eg 386 (468)
T TIGR00788 372 FLVLLARLCPSGCES 386 (468)
T ss_pred HHHHHHHhCCCCcee
Confidence 899999999999876
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.1e-17 Score=154.05 Aligned_cols=300 Identities=10% Similarity=-0.049 Sum_probs=182.0
Q ss_pred hhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhh----hhcchH-HHHHHHHHHHHHHHHHhhhh------hHHH
Q 014820 47 VGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD----NYGRRM-GFLGEALVTAGAGLLSSFSP------NYIT 115 (418)
Q Consensus 47 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~-~~~~~~~~~~~~~~~~~~~~------~~~~ 115 (418)
...++.+.+|++..++|.+..+..+.-++..|+.|.++| |+|||| .++.+.+..+++.+++...+ .+..
T Consensus 29 l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~ 108 (473)
T PRK10429 29 LMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVF 108 (473)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHH
Confidence 345566778999999999999999999999999999999 669955 55567777777765554322 1334
Q ss_pred HHHHHHHHHhhhhhh-HHHHHHHHhhc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHh----hc---CcchHHHHHHhHH
Q 014820 116 LITLRCLVGVGLGSG-HVFLSWFLEFV-PPSNRGMWMVIFSSFWTIGSVSEAIGAWII----MP---RLDWRWLLGLSSI 186 (418)
Q Consensus 116 l~~~r~l~G~~~g~~-~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l----~~---~~~w~~~~~~~~~ 186 (418)
+++..++.+++.... .+..++..|.. ++++|.+..+.-..+.++|..+.+.+...+ .. ..+|+....+.++
T Consensus 109 ~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~ 188 (473)
T PRK10429 109 VCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIA 188 (473)
T ss_pred HHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 555566677777777 55567889998 589999999987777777765555443332 11 2356666555555
Q ss_pred HHHHHHHH-HhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCccc
Q 014820 187 PSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTE 265 (418)
Q Consensus 187 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (418)
+.++..+. .+..+|.++. +..+ +++++
T Consensus 189 ~~~~~~~~~~~~~~e~~~~----~~~~------------------------------------------------~~~~~ 216 (473)
T PRK10429 189 FFIVSTIITLRNVHEVYSS----DNQV------------------------------------------------SAEGS 216 (473)
T ss_pred HHHHHHHHHHcCceecCCc----cccc------------------------------------------------ccccc
Confidence 55544333 3334443210 0000 00000
Q ss_pred ccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHH
Q 014820 266 GKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG 345 (418)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 345 (418)
+.+.+..++.+++++..+.. ....+......+....+.+.+.... ..+...........+++.+++
T Consensus 217 ~~~~~~~~~~~~~n~~~~~l---l~~~~~~~~~~~~~~~~~~y~~~y~-----------~~~~~~~~~~~~~~~i~~ii~ 282 (473)
T PRK10429 217 HLTLKDIVALIYKNDQLSCL---LGMALAYNIASNIINGFAIYYFTYV-----------IGDADLFPYYLSYAGAANLVT 282 (473)
T ss_pred CCCHHHHHHHHhcCHHHHHH---HHHHHHHHHHHHHHhhheeeEEEEE-----------CCCHHHHHHHHHHHHHHHHHH
Confidence 01223345555565433322 2223322233333333333333211 122333444555556788899
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh-----hchhHHHHHHHHHHHHHHHhhhHhHhhhhccccc
Q 014820 346 LLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-----YQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKL 412 (418)
Q Consensus 346 ~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 412 (418)
.++.+++.||+|+|+.+.++..+.+++.+.+.. ..+.+...+..++.+++.+...+..+++.+|..+
T Consensus 283 ~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id 354 (473)
T PRK10429 283 LILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVD 354 (473)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999988777765554444322 2333444555566777788888888999999965
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.3e-18 Score=159.76 Aligned_cols=299 Identities=19% Similarity=0.148 Sum_probs=210.5
Q ss_pred hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhh----hhcchHHHH-HHHHHHHHHHHHHhhh-h-------h
Q 014820 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD----NYGRRMGFL-GEALVTAGAGLLSSFS-P-------N 112 (418)
Q Consensus 46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~~~-~~~~~~~~~~~~~~~~-~-------~ 112 (418)
...+.+.+.+|+++...|.+..+..+..++..|+.|.++| |+||||.++ +|.++.+++.+++... + .
T Consensus 23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~ 102 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK 102 (428)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence 4456677788999999999999999999999999999999 899888655 6778888877766655 3 2
Q ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHHHhhcC-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC-------cchHHHHHH
Q 014820 113 YITLITLRCLVGVGLGSG-HVFLSWFLEFVP-PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR-------LDWRWLLGL 183 (418)
Q Consensus 113 ~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-------~~w~~~~~~ 183 (418)
...+.+..++..++.... .+..++..|..+ +++|.+..+.-..+..+|..+...+.+.+.+. .+|++...+
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v 182 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV 182 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence 233456666667777777 555678899997 57999999999888888887666665554421 168888888
Q ss_pred hHHHHHHHHHH-HhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCC
Q 014820 184 SSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNK 262 (418)
Q Consensus 184 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (418)
.+++.++..+. .+..+|+++ +.+ +
T Consensus 183 ~~iv~~v~~~i~~~~~ke~~~------~~~-------------------------------------------------~ 207 (428)
T PF13347_consen 183 LAIVGLVFFLITFFFVKERSV------EVT-------------------------------------------------E 207 (428)
T ss_pred HHHHHHHHhhhhhheeeeccc------ccc-------------------------------------------------c
Confidence 77777766444 444454110 000 0
Q ss_pred cccccchhhHHHHhhchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhh
Q 014820 263 TTEGKSGLSLFLMLFSSKLARTTILLWLLL-FGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLA 341 (418)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (418)
++++.+.++.++.+++++..+......+.. +..........++..++. +.+ ...........++
T Consensus 208 ~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl--------------~~~-~~~~~~~~~~~~~ 272 (428)
T PF13347_consen 208 QEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVL--------------GNE-GLISIFMLIFFVA 272 (428)
T ss_pred cccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh--------------cCc-hhhHHHHHHHHHH
Confidence 011112233567777765544444443333 333333333333444333 222 3445556677888
Q ss_pred hhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHhhhHhHhhhhccccccc
Q 014820 342 EIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ--SNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMT 414 (418)
Q Consensus 342 ~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 414 (418)
.+++.++.++++||+|+|+.+..+..+.+++.+.+.+.. +.+...+..++.+++.+..+...+++.+|+.+.+
T Consensus 273 ~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~ 347 (428)
T PF13347_consen 273 SIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYD 347 (428)
T ss_pred HHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhH
Confidence 899999999999999999999999999999888877754 7778888888999999999999999999998743
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-15 Score=144.72 Aligned_cols=294 Identities=12% Similarity=-0.005 Sum_probs=182.8
Q ss_pred hhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhh----hcchHHHH-HHHHHHHHHHHHHhhhhh------HHH
Q 014820 47 VGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN----YGRRMGFL-GEALVTAGAGLLSSFSPN------YIT 115 (418)
Q Consensus 47 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~~~-~~~~~~~~~~~~~~~~~~------~~~ 115 (418)
+..++.+..|+++..+|.+..+.-+.-++.-|+.|.++|| +||||..+ ++.+..+++.+++...++ ...
T Consensus 32 l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y 111 (460)
T PRK11462 32 MMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIY 111 (460)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 4455667789999999999999999999999999999995 79887665 566777777665544332 344
Q ss_pred HHHHHHHHHhhhhhh-HHHHHHHHhhcC-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC-------cchHHHHHHhHH
Q 014820 116 LITLRCLVGVGLGSG-HVFLSWFLEFVP-PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR-------LDWRWLLGLSSI 186 (418)
Q Consensus 116 l~~~r~l~G~~~g~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-------~~w~~~~~~~~~ 186 (418)
+.+.-++..++.... .+-.++..|..+ +++|++..++...+..+|..+++.+...+.+. .+|+....+.++
T Consensus 112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~i 191 (460)
T PRK11462 112 AAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSV 191 (460)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 555666777787777 444568888887 78999999999999998887776665443322 357776666666
Q ss_pred HHHHHHHHHh-hccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCccc
Q 014820 187 PSFILLAFLG-FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTE 265 (418)
Q Consensus 187 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (418)
+.+++..+.+ ..+|.++. +. +
T Consensus 192 i~~i~~~i~~~~~kE~~~~-----~~-----------------------------------------------------~ 213 (460)
T PRK11462 192 VAFMMLAFCFFTTKERVEA-----PP-----------------------------------------------------T 213 (460)
T ss_pred HHHHHHHHHHhcceeccCC-----Cc-----------------------------------------------------c
Confidence 6555543332 23332110 00 0
Q ss_pred ccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHH
Q 014820 266 GKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG 345 (418)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 345 (418)
+.+.++.++..++++.++......+..........+...+...|.. +. +...........++++++
T Consensus 214 ~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~-------------g~-~~~~~~~l~~~~i~~iig 279 (460)
T PRK11462 214 TTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWIL-------------GT-PEVFVAFLTTYCVGNLIG 279 (460)
T ss_pred CCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhc-------------CC-hHHHHHHHHHHHHHHHHH
Confidence 0012235666677665554444433333333333333333333331 12 222334455667888899
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh-hc-hhHHHHHHHHHHHHHHHhhhHhHhhhhccccc
Q 014820 346 LLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEVKL 412 (418)
Q Consensus 346 ~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 412 (418)
.+++++++||+++|+....+..+.++..+++.+ .. +.....+..++.+++.+...+..+++.+|..+
T Consensus 280 ~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d 348 (460)
T PRK11462 280 SALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVD 348 (460)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 999999999999998876555444433333333 22 22233344455566666666677788887765
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.2e-17 Score=155.16 Aligned_cols=184 Identities=14% Similarity=0.006 Sum_probs=136.6
Q ss_pred HHHHHHHhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHH---HhhhhhHH
Q 014820 39 MEIMILSFVGPTVK-SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLL---SSFSPNYI 114 (418)
Q Consensus 39 ~~~~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~---~~~~~~~~ 114 (418)
...+......|.+. +++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+. ...+++..
T Consensus 264 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (490)
T PRK10642 264 VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIG 343 (490)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 33344445566654 667988888888888889999999999999999999999988877654433322 22345677
Q ss_pred HHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCc-chHHHHHHhHHHHHHHH
Q 014820 115 TLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL-DWRWLLGLSSIPSFILL 192 (418)
Q Consensus 115 ~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~w~~~~~~~~~~~~~~~ 192 (418)
.+++++++.|++.+.. .....++.|.+|++.|++++++......+++.++|.+.+++.+.. +|+.++++..+++++.+
T Consensus 344 ~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~ 423 (490)
T PRK10642 344 LIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGL 423 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 7888899999887766 556678889999999999999744444555677888888877643 57777776666766666
Q ss_pred HHHhhccCchhHHHhh-----cChHHHHHHHHHHH
Q 014820 193 AFLGFQPESPRYLCLK-----GRTAEAHRALEKIA 222 (418)
Q Consensus 193 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 222 (418)
+..+++||+|++..++ ++.+|+++.+.+++
T Consensus 424 ~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 424 ITGVTMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence 6667789999887654 77778887777664
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.8e-16 Score=139.19 Aligned_cols=327 Identities=15% Similarity=0.085 Sum_probs=229.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHH
Q 014820 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL 98 (418)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 98 (418)
..++||.++++.++..+.+++.+-.+++...+....|| +...+-|.+-+|.+.+....+++-|+.|++|-|...+++..
T Consensus 39 Vy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ 117 (480)
T KOG2563|consen 39 VYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTV 117 (480)
T ss_pred cchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHH
Confidence 45778999999899999998888888888888888888 77788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh------hHH--HHHHHHHHHHhhhhhhHHH-HHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 014820 99 VTAGAGLLSSFSP------NYI--TLITLRCLVGVGLGSGHVF-LSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAW 169 (418)
Q Consensus 99 ~~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 169 (418)
+..++..+-.++. .++ ....+..+.+.++-..... .....-|+|+++|..+..+-..+..+|.+++.++..
T Consensus 118 ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llpp 197 (480)
T KOG2563|consen 118 LNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPP 197 (480)
T ss_pred HHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccc
Confidence 9999998876652 344 5567777777777766444 346678999999999999999999999999988888
Q ss_pred HhhcC------cchHH--HHHHhHHHHHHHHH-HHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCC
Q 014820 170 IIMPR------LDWRW--LLGLSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 240 (418)
Q Consensus 170 ~l~~~------~~w~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (418)
.+..+ ..|.. .|+..+.+..+.+. ..+..++.|+.. .....+.. +
T Consensus 198 ilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP---ps~s~~~~--~--------------------- 251 (480)
T KOG2563|consen 198 ILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP---PSASQAAL--Q--------------------- 251 (480)
T ss_pred eecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC---CchhHhhh--h---------------------
Confidence 77643 34655 34444444433332 233334433210 00000000 0
Q ss_pred CCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 014820 241 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPL 320 (418)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (418)
+.+-..+.+..+++ +.+++..+++......+++....+..-+
T Consensus 252 -------------------------~~~f~~si~~~~~n---~~F~il~~~ygi~~g~F~~l~~~l~~~l---------- 293 (480)
T KOG2563|consen 252 -------------------------DASFPKSIKSCFKN---RQFIILAICYGIGLGLFNSLSTLLNLAL---------- 293 (480)
T ss_pred -------------------------cCcHHHHHHHHHcC---ccHHHHHHHHhhhHHHHHHHHHHhhhcc----------
Confidence 01233467777777 5566777777777777777766555222
Q ss_pred ccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhch-hHHHHHHHHHHHHH-HHHHHh---hchhHHHHHHHHHHHHH
Q 014820 321 MFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR-KLSITIMFTLSCLF-LLPLVT---YQSNILTTGLLFGARMC 395 (418)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~gr-r~~l~~~~~~~~~~-~~~l~~---~~~~~~~~~~~~~~~~~ 395 (418)
...+++...++.......++++++..+.|.+.||.++ |....+.+....++ +.+... ..+.+.......+.|++
T Consensus 294 -~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~ 372 (480)
T KOG2563|consen 294 -CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFF 372 (480)
T ss_pred -ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHh
Confidence 2224555777788888889999999999999999875 44444444444444 222222 23344555666777788
Q ss_pred HHhhhHhHhhhhcccc
Q 014820 396 VMGAFTVSLIYAAEVK 411 (418)
Q Consensus 396 ~~~~~~~~~~~~~e~~ 411 (418)
..+..|+..-+..|..
T Consensus 373 ~~~~~Pig~ElgvE~T 388 (480)
T KOG2563|consen 373 GTGYLPIGFELGVETT 388 (480)
T ss_pred hcCCCCcceeeeeeec
Confidence 8888888888888863
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-15 Score=143.89 Aligned_cols=298 Identities=11% Similarity=-0.073 Sum_probs=173.1
Q ss_pred hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhh----cchHHH-HHHHHHHHHHHHHH-hh----hh--hH
Q 014820 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY----GRRMGF-LGEALVTAGAGLLS-SF----SP--NY 113 (418)
Q Consensus 46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~----Grr~~~-~~~~~~~~~~~~~~-~~----~~--~~ 113 (418)
+..+++.+.+|++..++|.+.+...+..++..++.|+++||. ||||.+ +.+.+...+..++. .. ++ ..
T Consensus 30 ~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (448)
T PRK09848 30 FLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKV 109 (448)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHH
Confidence 344566777899999999999999999999999999999996 777755 45555444443332 11 11 22
Q ss_pred HHHHHHHHHHHhhhhhh-HHHHHHHHhhcC-CCCchhHHHHHHHHHH-----HHHHHHHHHHHHhhcCc--chHHHHHHh
Q 014820 114 ITLITLRCLVGVGLGSG-HVFLSWFLEFVP-PSNRGMWMVIFSSFWT-----IGSVSEAIGAWIIMPRL--DWRWLLGLS 184 (418)
Q Consensus 114 ~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~-----~g~~~~~~~~~~l~~~~--~w~~~~~~~ 184 (418)
+..++..++.+++.+.. +...++..+..+ +++|.+..+.-..+.+ ++..++|.+.....+.. +|.....+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~ 189 (448)
T PRK09848 110 VYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVL 189 (448)
T ss_pred HHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 33444556677777777 555566666654 4678887776554433 44555565555432211 121111222
Q ss_pred HHHHHHHHHH-HhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCc
Q 014820 185 SIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKT 263 (418)
Q Consensus 185 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (418)
+++.++..+. ....+|+++. +
T Consensus 190 ~v~~~~~~~~~~~~~~e~~~~-----~----------------------------------------------------- 211 (448)
T PRK09848 190 AIAGMVLYFICFKSTRENVVR-----I----------------------------------------------------- 211 (448)
T ss_pred HHHHHHHHHHHHcCcEeccCC-----C-----------------------------------------------------
Confidence 2222222111 2222332110 0
Q ss_pred ccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhh
Q 014820 264 TEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEI 343 (418)
Q Consensus 264 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (418)
.++......++.+++++..... ....+.....++......+.+..+. .+.++....+......++.+
T Consensus 212 ~~~~~~~~~~~~l~~n~~f~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~ 278 (448)
T PRK09848 212 VAQPSLKISLQTLKRNRPLFML---CIGALCVLISTFAVSASSLFYVRYV----------LNDTGLFTVLVLVQNLVGTV 278 (448)
T ss_pred ccCCCHHHHHHHHhCCchHHHH---HHHHHHHHHHHHHHhhhheeeEeee----------cCChHHHHHHHHHHHHHHHH
Confidence 0001122356667776443332 2323333333333333444444221 23444444343333356677
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHhhhHhHhhhhccccccc
Q 014820 344 PGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ--SNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMT 414 (418)
Q Consensus 344 ~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 414 (418)
++.++.+++.||+|+|+.+.++..+.+++.+.+.+.. +.+......++.+++.+...+..+++.+|..|.+
T Consensus 279 ~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~ 351 (448)
T PRK09848 279 ASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYG 351 (448)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 8899999999999999999999888877776665532 3344445566677888888888899998888753
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-15 Score=136.93 Aligned_cols=238 Identities=10% Similarity=0.015 Sum_probs=170.5
Q ss_pred hhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC-------------
Q 014820 109 FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR------------- 174 (418)
Q Consensus 109 ~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------------- 174 (418)
...+++.++++-++.|.|.+.. +..++++++..|++++++.+++.+.+.++|..++|.+++.+...
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 4578999999999999999999 89999999999999999999999999999999999999987631
Q ss_pred ---cchHHHHHHhHHHHHHHHHHHhhc--cCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCc
Q 014820 175 ---LDWRWLLGLSSIPSFILLAFLGFQ--PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPP 249 (418)
Q Consensus 175 ---~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (418)
.+|+++|++.+.+.++..+.+.+. ||.++ +.++ + . +
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~--~----~---~------------------------ 126 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA--R----V---S------------------------ 126 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc--c----c---c------------------------
Confidence 478999987766655554444333 32210 0000 0 0 0
Q ss_pred cchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCCh
Q 014820 250 ELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA 329 (418)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (418)
.+ ++ .+.+..++. +..+...+..++......+...|.+.|+.+. +..+.++.
T Consensus 127 ------------~~---~~--~~~~~~~~~---~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~--------~~~g~s~~ 178 (310)
T TIGR01272 127 ------------SG---DT--TQKTSAFQF---THLVLGALGIFVYVGAEVSAGSFLVNFLSDP--------HALGLPED 178 (310)
T ss_pred ------------cc---cc--cchhhHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccCCCCHH
Confidence 00 00 001112222 3444455555666656777777888888432 12367888
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcc
Q 014820 330 NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAE 409 (418)
Q Consensus 330 ~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 409 (418)
+..........+.++|+++++++.||+++|+.+.++..+.+++.++....++. .......+.+++.+..+|...+...+
T Consensus 179 ~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~-~~~~~~~l~g~~~s~i~P~~~s~a~~ 257 (310)
T TIGR01272 179 QAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGY-VAMWFVLALGLFNSIMFPTIFSLALN 257 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888999999999999999999999998888877777766555443333 23345567888999999999999998
Q ss_pred ccccc
Q 014820 410 VKLMT 414 (418)
Q Consensus 410 ~~p~~ 414 (418)
.+|++
T Consensus 258 ~~~~~ 262 (310)
T TIGR01272 258 ALGRH 262 (310)
T ss_pred hhhhh
Confidence 88765
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-15 Score=136.71 Aligned_cols=313 Identities=14% Similarity=0.092 Sum_probs=185.1
Q ss_pred HHHHHHHHHhhhhhhhh-hcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHH--H-HHHHHHhhh--
Q 014820 37 EAMEIMILSFVGPTVKS-EWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVT--A-GAGLLSSFS-- 110 (418)
Q Consensus 37 ~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~--~-~~~~~~~~~-- 110 (418)
..+.....-+..+.+.+ +.|+|.++.|.+.++..+...+.+|+.|.++||+|.||-++...... . ...+...+.
T Consensus 19 ~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pl 98 (412)
T PF01306_consen 19 YFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPL 98 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555565555 58999999999999999999999999999999999777654332222 1 222222222
Q ss_pred --hhHH-HHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHH
Q 014820 111 --PNYI-TLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI 186 (418)
Q Consensus 111 --~~~~-~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~ 186 (418)
.|.+ ..+++-+..|+..... ++.-+++.++. ++.+.-.|-.....++|.+++..+++.+.+ .+-+..|++...
T Consensus 99 l~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~ 175 (412)
T PF01306_consen 99 LQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASA 175 (412)
T ss_dssp HHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHH
Confidence 2322 2222233334433333 55555555544 345566677788889999999999998875 455677777666
Q ss_pred HHHHHHHHHhhc-cCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCccc
Q 014820 187 PSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTE 265 (418)
Q Consensus 187 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (418)
.+++..++.... |+.++.. +. .+ .+..++
T Consensus 176 ~~~il~lll~~~~~~~~~~~----~~-------------------------------~~---------------~~~~~~ 205 (412)
T PF01306_consen 176 AAIILLLLLLLLKPDVPPQA----EV-------------------------------AD---------------ALGAKK 205 (412)
T ss_dssp HHHHHHHHHHSS---SSSSS-----S-------------------------------ST---------------TSSS--
T ss_pred HHHHHHHHHHHcCCcCchhh----hh-------------------------------hc---------------ccccCC
Confidence 555544443333 2221100 00 00 000001
Q ss_pred ccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhh
Q 014820 266 GKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYA----VVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLA 341 (418)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (418)
++.+.++..++++.+. +|...+........|+. ...+...+..+. +.+....+....+..+.
T Consensus 206 ~~~~~~~~~~l~k~~~---fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~-----------~~g~~~~G~l~s~~v~~ 271 (412)
T PF01306_consen 206 DKVSLKDVLSLFKMRN---FWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSA-----------GQGNQMYGYLWSVQVFL 271 (412)
T ss_dssp ----HHHHHHHTTSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSH-----------HHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHhcchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------ccChhHHhHHHHHHHHH
Confidence 1112234455666543 33333322222222222 222333333111 13334556667777788
Q ss_pred hhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhccccccccc
Q 014820 342 EIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLF 416 (418)
Q Consensus 342 ~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R 416 (418)
+++...+..++.+|+|.|+.++++..++++=.+..++.++.+.....-.+-++-.........-|+.+.+|++..
T Consensus 272 E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rls 346 (412)
T PF01306_consen 272 EALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLS 346 (412)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGH
T ss_pred HHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHH
Confidence 889999999999999999999999999999999999988888888888888888888888888999999998864
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-14 Score=133.98 Aligned_cols=296 Identities=16% Similarity=0.102 Sum_probs=195.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHH-HHHHHHHHHHHhhh-hh-HHHHHHHHHHHHhhhhhh-HHHHHH
Q 014820 61 EESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGE-ALVTAGAGLLSSFS-PN-YITLITLRCLVGVGLGSG-HVFLSW 136 (418)
Q Consensus 61 ~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~-~~~~~~~~~~~~~~-~~-~~~l~~~r~l~G~~~g~~-~~~~~~ 136 (418)
..++..++..+..++..|+.|.++|+-|+||.++.. ..+..+++..+.+. ++ ++...+.-++.-++.+.. ....++
T Consensus 71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~ 150 (477)
T PF11700_consen 71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY 150 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999999999999988866654 44444555555553 33 444444445555566666 555679
Q ss_pred HHhhcCCCCc--------------------------hhHHHHHHHHHHHHHHHHHHHHHHhhc--------CcchHHHHH
Q 014820 137 FLEFVPPSNR--------------------------GMWMVIFSSFWTIGSVSEAIGAWIIMP--------RLDWRWLLG 182 (418)
Q Consensus 137 ~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~--------~~~w~~~~~ 182 (418)
+.|..+++++ ++..+.-.....+|+++...+...+.. ..+-|..+.
T Consensus 151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~ 230 (477)
T PF11700_consen 151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL 230 (477)
T ss_pred hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence 9999999988 999999888888888887766555431 123577777
Q ss_pred HhHHHHHHH-HHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCC
Q 014820 183 LSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGN 261 (418)
Q Consensus 183 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (418)
+.++.-++. ....+++||.|+....++.........+++
T Consensus 231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l---------------------------------------- 270 (477)
T PF11700_consen 231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRL---------------------------------------- 270 (477)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHH----------------------------------------
Confidence 777665554 445666777654200000011111111111
Q ss_pred CcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhh
Q 014820 262 KTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLA 341 (418)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (418)
...+++..+. +.+....+.++...-....+......|..+. .+.+..+......+..+.
T Consensus 271 --------~~t~k~~~~~---~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~----------lg~s~~~l~~~~l~~~i~ 329 (477)
T PF11700_consen 271 --------WRTFKEIRKL---RQLFLFLIAYFLYSDGVNTIISFAGIYATEV----------LGMSTTQLIVFGLVVQIV 329 (477)
T ss_pred --------HHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCcCHHHHHHHHHHHHHH
Confidence 1133333333 3444444444443344444444444444322 368888988899999999
Q ss_pred hhHHHHHHHHHHhhhchh--HHHHHHHHHHHHHHHHHHh--------hchhHHHHHHHHHHHHHHHhhhHhHhhhhcccc
Q 014820 342 EIPGLLLAAILVDTAGRK--LSITIMFTLSCLFLLPLVT--------YQSNILTTGLLFGARMCVMGAFTVSLIYAAEVK 411 (418)
Q Consensus 342 ~~~g~~~~g~l~d~~grr--~~l~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 411 (418)
+++|.++.|++.||+|.| +++..+..+..+..+.-.+ ..+.+..+++.++.|.+.++..+..-++.+|+.
T Consensus 330 a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~Li 409 (477)
T PF11700_consen 330 AIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLI 409 (477)
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhC
Confidence 999999999999999988 7777766665333333222 456677888888999999999999999999999
Q ss_pred cccccc
Q 014820 412 LMTLFT 417 (418)
Q Consensus 412 p~~~R~ 417 (418)
|++.++
T Consensus 410 P~g~e~ 415 (477)
T PF11700_consen 410 PPGREA 415 (477)
T ss_pred CCchhh
Confidence 998654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-14 Score=130.14 Aligned_cols=300 Identities=19% Similarity=0.097 Sum_probs=203.3
Q ss_pred hhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhh----hcchHHH-HHHHHHHHHHHHHHhhhh------hHHH
Q 014820 47 VGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN----YGRRMGF-LGEALVTAGAGLLSSFSP------NYIT 115 (418)
Q Consensus 47 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~~-~~~~~~~~~~~~~~~~~~------~~~~ 115 (418)
++-.+.+.+|++...+|.+..+.-+--++.-|+.|.++|| +||+|.+ +.+.+..++...++-.++ +...
T Consensus 35 Ll~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~y 114 (467)
T COG2211 35 LLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIY 114 (467)
T ss_pred HHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHH
Confidence 3345667789999999999999999999999999999995 7887765 456688888877776665 3455
Q ss_pred HHHHHHHHHhhhhhh-HHHHHHHHhhcC-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhc-------CcchHHHHHHhHH
Q 014820 116 LITLRCLVGVGLGSG-HVFLSWFLEFVP-PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-------RLDWRWLLGLSSI 186 (418)
Q Consensus 116 l~~~r~l~G~~~g~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~w~~~~~~~~~ 186 (418)
.++.-.+.++++... .+-.++.+|..+ +++|.+..+.-+.+..+|..+...+...+.+ ..||+..-.+.++
T Consensus 115 a~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~v 194 (467)
T COG2211 115 ALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGV 194 (467)
T ss_pred HHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHH
Confidence 667778889999888 445567788875 6899999999999999997666555544432 3478877777776
Q ss_pred HHHHHHHHH-hhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCccc
Q 014820 187 PSFILLAFL-GFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTE 265 (418)
Q Consensus 187 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (418)
++.+..+.. +-.+|++.. +... ++..
T Consensus 195 i~~i~~l~~~~~v~ER~~~---~~~~--------------------------------------------------~~~~ 221 (467)
T COG2211 195 IGVILLLFCFFNVKERVVE---TQPT--------------------------------------------------KTGV 221 (467)
T ss_pred HHHHHHHHHHHHhhcccCc---cccC--------------------------------------------------cccc
Confidence 666654433 334443210 0000 0001
Q ss_pred ccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHH
Q 014820 266 GKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG 345 (418)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 345 (418)
+.+...++..+++++.++..++..++.++......+. ...|.. ...+.++............+.+.+
T Consensus 222 ~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~---~~yy~~----------y~lg~~~l~~~~~~~~~~~~~l~~ 288 (467)
T COG2211 222 KLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSI---MVYYVT----------YVLGDPELFAYLLLLASGAGLLIG 288 (467)
T ss_pred cccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhh---hheeEE----------EEcCChHHHHHHHHHHHHHHHHHH
Confidence 1122234455666654444433333332222222222 222221 112556666666777777777788
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHhhhHhHhhhhccccc
Q 014820 346 LLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ--SNILTTGLLFGARMCVMGAFTVSLIYAAEVKL 412 (418)
Q Consensus 346 ~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 412 (418)
.++...+.+|+|+|++..++.++.+++.+.+.+.. +.+..++..++.+++.+...++.|++.+|..+
T Consensus 289 ~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vD 357 (467)
T COG2211 289 LILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVD 357 (467)
T ss_pred HHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhh
Confidence 99999999999999999999999999988888743 45556666678888889999999999998764
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-14 Score=134.50 Aligned_cols=154 Identities=13% Similarity=0.095 Sum_probs=126.2
Q ss_pred hhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 014820 46 FVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVG 124 (418)
Q Consensus 46 ~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 124 (418)
...|. +.+++|++..+.+++.+...++..++.++.|+++||+|||+.+..+.....+........++.+.+++.+++.+
T Consensus 237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 316 (393)
T PRK15011 237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNA 316 (393)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34454 45678999999999988888888899999999999999999888776666655555556678888888899888
Q ss_pred hhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHhhccC
Q 014820 125 VGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPE 200 (418)
Q Consensus 125 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 200 (418)
++.|.. .....+..|..|+ +|++++++++....+|..+++.+++.+.+.+||+..|.+.+++.++.++..++.||
T Consensus 317 ~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 317 IYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 887776 5566778898885 69999999999999999999999999999899999998888777777666666554
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=143.31 Aligned_cols=139 Identities=14% Similarity=0.076 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhc
Q 014820 63 SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFV 141 (418)
Q Consensus 63 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~ 141 (418)
.+...+..++..++.+++|+++||+|||++++++.++.+++.++.++.++.+.+++.+++.|++.+.. ++..++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456677889999999999999999999999999999999999999888888888888888877766 77788999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHhhccCch
Q 014820 142 PPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESP 202 (418)
Q Consensus 142 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (418)
|++.|++++|+......+|.+++|.+++.+.+. +...+|++.+++.++..++.+++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999877653 456677777777777666666778864
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-15 Score=118.98 Aligned_cols=131 Identities=20% Similarity=0.262 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCC
Q 014820 66 TTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPS 144 (418)
Q Consensus 66 ~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~ 144 (418)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+.....++++.+.+.+++.|++.+.. +....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567788999999999999999999999999999999888888899999999999999999887 77778999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHh
Q 014820 145 NRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG 196 (418)
Q Consensus 145 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~ 196 (418)
+|++..++.+....+|..+++.+.+.+.+..+|++.+.+.++..++..+...
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLA 135 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999889999999888777666644433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-13 Score=124.42 Aligned_cols=173 Identities=18% Similarity=0.096 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hhhhhhhcC----CCcchhHHHHHHHHHHHHHHHhHHHHhhhhh-cchHHHHHHHHHH
Q 014820 27 LAYAGLGWVAEAMEIMILSFV-GPTVKSEWN----LSSTEESLITTSVFAGLVVGAYAWGLVADNY-GRRMGFLGEALVT 100 (418)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~ 100 (418)
+..+...-+...++.+.+... .-++..+++ +|++++.-+.+.|..-.-+...++|+++||+ |+|+.+..|.++.
T Consensus 23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~ 102 (498)
T COG3104 23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILM 102 (498)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 334444455555555444433 334455555 9999998889998888889999999999996 9999999999999
Q ss_pred HHHHHHHhhhh--hHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCC--CchhHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 014820 101 AGAGLLSSFSP--NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPS--NRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL 175 (418)
Q Consensus 101 ~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 175 (418)
.++.++.+.+. +...++++..+.++|.|.. +...+++.|.+|++ +|-...+++..+.++|+.++|++.+++.+++
T Consensus 103 ~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~ 182 (498)
T COG3104 103 AIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY 182 (498)
T ss_pred HHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh
Confidence 99999999884 7889999999999999999 99999999999864 4778888999999999999999999999999
Q ss_pred chHHHHHHhHHHHHHHHHHHhhcc
Q 014820 176 DWRWLLGLSSIPSFILLAFLGFQP 199 (418)
Q Consensus 176 ~w~~~~~~~~~~~~~~~~~~~~~~ 199 (418)
||...|...++-..+.++.+++.+
T Consensus 183 g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 183 GWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999988877776666555543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=137.09 Aligned_cols=148 Identities=7% Similarity=-0.050 Sum_probs=126.6
Q ss_pred hcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HH
Q 014820 54 EWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HV 132 (418)
Q Consensus 54 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~ 132 (418)
+.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+.. +.
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34666678899999999999999999999999999999999999999998888888999999999999999988877 66
Q ss_pred HHHHHHhhcCCCCchhHHHH-HHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHH-HhhccCc
Q 014820 133 FLSWFLEFVPPSNRGMWMVI-FSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPES 201 (418)
Q Consensus 133 ~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~ 201 (418)
...++.|.+|++.|+...+. ++.+..+|.++++.+.+++.+..||+..|.+.+++.++..++ ...++++
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 67889999999999988766 677889999999999999999999999999888777665443 3344443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=136.76 Aligned_cols=156 Identities=15% Similarity=0.070 Sum_probs=126.8
Q ss_pred hhhhhhhhhcCCCc--------chhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhh----hH
Q 014820 46 FVGPTVKSEWNLSS--------TEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSP----NY 113 (418)
Q Consensus 46 ~~~~~~~~~~~~s~--------~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----~~ 113 (418)
...+.+.++.|.++ +..+...++..++..++.++.|+++||+|+|+++..+.++.+++..+..... ++
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~ 308 (418)
T TIGR00889 229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY 308 (418)
T ss_pred HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 33455555666443 5669999999999999999999999999999999999999988876666532 34
Q ss_pred HHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHH-HHHHHHHHHHHHHHHHhhcC------cchHHHHHHhH
Q 014820 114 ITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFS-SFWTIGSVSEAIGAWIIMPR------LDWRWLLGLSS 185 (418)
Q Consensus 114 ~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~------~~w~~~~~~~~ 185 (418)
+.+++.+++.|++.+.. +....++.|++|+++|+++.|+.+ ...++|.+++|++++.+.++ +||+..|.+.+
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~ 388 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA 388 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 66778899999999887 666788999999999999999997 67899999999999998876 56999999888
Q ss_pred HHHHHHH-HHHhhccCc
Q 014820 186 IPSFILL-AFLGFQPES 201 (418)
Q Consensus 186 ~~~~~~~-~~~~~~~~~ 201 (418)
++.++.. +..++++|+
T Consensus 389 ~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 389 GYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 7777764 445556655
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-15 Score=126.62 Aligned_cols=340 Identities=12% Similarity=-0.034 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhh-hcchHHHHHHHHHH
Q 014820 22 YQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YGRRMGFLGEALVT 100 (418)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~ 100 (418)
+|...+...++..+..++.+...+....+...+.+++.++..++-+.++.-..+.++++|++.|| +|-|..-++-++..
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv 120 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV 120 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence 34445555555556666666777777778888889999999999999999999999999999996 68777666555555
Q ss_pred HHHHHHHh---hhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 014820 101 AGAGLLSS---FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD 176 (418)
Q Consensus 101 ~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 176 (418)
.++.++++ ..+.+|.+.++||+.|+|.-.. .+...+...|+..|+.+.++|+......+|+.+-..+.+++.+..+
T Consensus 121 ~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 121 FLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred HHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence 66666554 4689999999999999987665 5566799999999999999999999999998876666666654221
Q ss_pred hHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcCh-HHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhc
Q 014820 177 WRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRT-AEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLL 255 (418)
Q Consensus 177 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (418)
--.+=.-...+++...+-......+--.....+-. +.+++.+. ..++..-+
T Consensus 201 ~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh---~e~g~~Ge------------------------- 252 (459)
T KOG4686|consen 201 RMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILH---LEEGFLGE------------------------- 252 (459)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh---hhcCcccC-------------------------
Confidence 10000000000000000000000000000001111 11111111 11110000
Q ss_pred ccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHH
Q 014820 256 SSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE 335 (418)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (418)
.++..+.+ -+++++ +.+.+.++++....+.+++ ..|.+.. +.+|.++.+++...
T Consensus 253 -----------~pkLtdv~-~f~ppf-w~~~iicv~yyva~fPFi~---lg~~fF~----------~rfGlS~~~a~~i~ 306 (459)
T KOG4686|consen 253 -----------EPKLTDVN-TFYPPF-WVLVIICVLYYVAWFPFIT---LGPMFFQ----------KRFGLSAVSAGNIL 306 (459)
T ss_pred -----------Cccccccc-ccCccH-HHHHHHHHHHHHHHHHHhh---hhHHHHH----------HhhCCChhhccchh
Confidence 00000000 112222 2233333333333333333 3444432 23468888777777
Q ss_pred HHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHH-HHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhccccccc
Q 014820 336 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLS-CLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMT 414 (418)
Q Consensus 336 ~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 414 (418)
...-....+.+++.|.++||.|++...+.+..+. ..+...+.+.. +..++.+.+.|..........|.+++.+.|.+
T Consensus 307 s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~--lsPy~~m~~lGLsysllAcslWP~va~~vpE~ 384 (459)
T KOG4686|consen 307 STVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF--LSPYTSMTFLGLSYSLLACSLWPCVASLVPEE 384 (459)
T ss_pred hhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh--ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH
Confidence 7777778888999999999999997766654433 33444444321 22344455566655555555677777777766
Q ss_pred ccc
Q 014820 415 LFT 417 (418)
Q Consensus 415 ~R~ 417 (418)
.-|
T Consensus 385 qLG 387 (459)
T KOG4686|consen 385 QLG 387 (459)
T ss_pred Hhc
Confidence 533
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-14 Score=133.43 Aligned_cols=146 Identities=13% Similarity=0.039 Sum_probs=123.9
Q ss_pred hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHH
Q 014820 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNY--ITLITLRCLV 123 (418)
Q Consensus 46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~ 123 (418)
...+.+.+++|.+..+.+++.+...++..+++++.|++.||+|||+.+.++.++.+++.++..+.++. ..+++..++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (377)
T TIGR00890 226 GLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV 305 (377)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence 34455667889898899999999999999999999999999999999999988888888777766543 3344567788
Q ss_pred Hhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHH
Q 014820 124 GVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL 191 (418)
Q Consensus 124 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~ 191 (418)
|++.+.. .....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.++.||+..|.+.+++.++.
T Consensus 306 g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 8888776 5666788999999999999999999999999999999999999999999998877766554
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.8e-14 Score=130.86 Aligned_cols=157 Identities=15% Similarity=0.077 Sum_probs=127.2
Q ss_pred HHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 014820 42 MILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRC 121 (418)
Q Consensus 42 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 121 (418)
.......|.+.++.|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+.+..+++.++..+.++.+.+.+..+
T Consensus 237 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (406)
T PRK11551 237 YFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGF 316 (406)
T ss_pred HHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33444567777888999999999999999999999999999999999999998877777777777777778877778888
Q ss_pred HHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCc-chHHHHHHhHHHHHHHHHHHhhc
Q 014820 122 LVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL-DWRWLLGLSSIPSFILLAFLGFQ 198 (418)
Q Consensus 122 l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~w~~~~~~~~~~~~~~~~~~~~~ 198 (418)
+.|++.+.. +...++..|.+|+++|+++.|+.+....+|..++|.+++.+.++. +|...++......++..+..+.+
T Consensus 317 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 317 AAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 888877666 677788899999999999999999999999999999999988764 45555655555554444444433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.9e-12 Score=112.57 Aligned_cols=300 Identities=15% Similarity=0.116 Sum_probs=193.8
Q ss_pred hhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhc-----chHHHHH-HHHHHHHHHHHHhhh-----h-------
Q 014820 50 TVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYG-----RRMGFLG-EALVTAGAGLLSSFS-----P------- 111 (418)
Q Consensus 50 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~~~~-~~~~~~~~~~~~~~~-----~------- 111 (418)
.+..|++++....+.+.++.++... ..+.+|+.+|+.+ ||..+++ |..+...+..+..++ .
T Consensus 5 VMIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 5 VMIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 4668899999999999998887665 5899999999998 8877664 555555555544432 2
Q ss_pred hH--H--HHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHH
Q 014820 112 NY--I--TLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI 186 (418)
Q Consensus 112 ~~--~--~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~ 186 (418)
+. + ...+...+.|+|.+.. ....++++|..|+++|+++.++.....-+|.+++..+.+.+.+.++-....-+...
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~ 163 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG 163 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence 22 2 2334556778888887 66778999999999999999999999999999999999988887764443333222
Q ss_pred HHH---HHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCc
Q 014820 187 PSF---ILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKT 263 (418)
Q Consensus 187 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (418)
..+ ...++..+-.|.+... +. +..+
T Consensus 164 ~a~i~~~l~~ia~wg~E~r~~~----~~------------------------------------------------~~~~ 191 (403)
T PF03209_consen 164 VALIALLLNLIALWGQEPRRSR----RA------------------------------------------------AAAE 191 (403)
T ss_pred HHHHHHHHHHHHHHhcccCCcc----cc------------------------------------------------cCCC
Confidence 222 2222222222221100 00 0011
Q ss_pred ccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhh
Q 014820 264 TEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEI 343 (418)
Q Consensus 264 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (418)
+++.+....++++...+..+++....+.. ...++.--..+..|.. +-++.+..+........+.+.+
T Consensus 192 ~~~~~f~~a~~~~~~~~~a~~f~~fl~l~---t~a~~~QD~iLEPygg----------~Vfgmsv~eTT~Lta~~~~G~L 258 (403)
T PF03209_consen 192 RPRPPFREAWRQVWASPQARRFFVFLFLG---TLAFFMQDVILEPYGG----------EVFGMSVGETTRLTAFWGGGTL 258 (403)
T ss_pred CCCccHHHHHHHHHhCCChhHHHHHHHHH---HHHHHhhHHHcCCchh----------HHcCCCHHHHHHHHHHHHHHHH
Confidence 11233445677777655444444333222 2222222222222332 2347888998888989999999
Q ss_pred HHHHHHHHHHh-hhchhHHHHHHHHHHHHHHHHHHh---hchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccc
Q 014820 344 PGLLLAAILVD-TAGRKLSITIMFTLSCLFLLPLVT---YQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTL 415 (418)
Q Consensus 344 ~g~~~~g~l~d-~~grr~~l~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 415 (418)
+|....|++.. |.++++...++...+.+++.++.. ..+.+......+++|++.+.......+...++.+++.
T Consensus 259 ~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~ 334 (403)
T PF03209_consen 259 LGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR 334 (403)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc
Confidence 99989888776 577777777888877777766654 4456677777888888777766556666666665554
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=127.41 Aligned_cols=162 Identities=24% Similarity=0.287 Sum_probs=142.0
Q ss_pred HHHHHHHHHHhhhhhhhhhc-CCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchH-HHHHHHHHHHHHHHHHhhhhhH
Q 014820 36 AEAMEIMILSFVGPTVKSEW-NLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRM-GFLGEALVTAGAGLLSSFSPNY 113 (418)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~~~~ 113 (418)
.............|.+.++. |.+..+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 265 (352)
T cd06174 186 LLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL 265 (352)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccH
Confidence 33344444455566666554 889999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHH
Q 014820 114 ITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL 192 (418)
Q Consensus 114 ~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~ 192 (418)
+.+.+..++.|++.+.. +....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+|+..+.+.+++.++..
T Consensus 266 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~ 345 (352)
T cd06174 266 ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAA 345 (352)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Confidence 99999999999999988 88888999999999999999999999999999999999999988999999999888887765
Q ss_pred HHHhh
Q 014820 193 AFLGF 197 (418)
Q Consensus 193 ~~~~~ 197 (418)
+..++
T Consensus 346 i~~~~ 350 (352)
T cd06174 346 LLLLL 350 (352)
T ss_pred HHhee
Confidence 55443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-13 Score=127.67 Aligned_cols=149 Identities=14% Similarity=0.126 Sum_probs=124.6
Q ss_pred hhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 014820 50 TVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGS 129 (418)
Q Consensus 50 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 129 (418)
.+.+++|.++.+.+++.+.......++.++.|++.||+|||+.+.++.++..+......+.++.+.+.+.+++.|++.|.
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999988888878888999999999999999999888777666666666677888888889999998887
Q ss_pred h-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHhhcc
Q 014820 130 G-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQP 199 (418)
Q Consensus 130 ~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 199 (418)
. +....++.|..|+ +++++.++++....+|..++|.+++.+.+..||+..|++.++..++..+...+++
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheec
Confidence 7 6667788888875 5679999999999999999999999999989999999988887777666555544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-13 Score=127.59 Aligned_cols=153 Identities=10% Similarity=-0.052 Sum_probs=132.1
Q ss_pred HHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 014820 41 IMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLR 120 (418)
Q Consensus 41 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 120 (418)
...+....|.+.+++|.+..+.|.+.+...++..++.++.+++.||+|+|+.+.++.++.++..++.+++++.+.+++.+
T Consensus 221 ~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q 300 (382)
T TIGR00902 221 HAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQ 300 (382)
T ss_pred HHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Confidence 33344455666677999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHH-HHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHH
Q 014820 121 CLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFS-SFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL 195 (418)
Q Consensus 121 ~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~ 195 (418)
++.|+..|.. +....++.+. |+++|++..++++ ...++|..+++.+++++.+++|+ ..|.+.+.++++.+++.
T Consensus 301 ~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 301 ILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 9999999998 7777899988 9999999999986 57889999999999999999886 56767776666554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-13 Score=127.91 Aligned_cols=155 Identities=15% Similarity=0.091 Sum_probs=128.7
Q ss_pred HhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 014820 45 SFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVG 124 (418)
Q Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 124 (418)
....+.+.++.|. ++.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|
T Consensus 236 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 313 (399)
T PRK05122 236 ATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTG 313 (399)
T ss_pred HHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344555555665 34567778888999999999999999999999999998888888888888888888888999999
Q ss_pred hhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHhhccCc
Q 014820 125 VGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPES 201 (418)
Q Consensus 125 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 201 (418)
++.+.. +.......|..|+++||++.++++....+|..+++++.+.+.+..||+..+++.+++.++..+..++++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 314 FGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999877 66667778999999999999999999999999999999999988999999998887777765555555443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.6e-12 Score=111.32 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=112.8
Q ss_pred HHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 014820 43 ILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL 122 (418)
Q Consensus 43 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 122 (418)
..++..-.+.+++|+++.|++.+....+....+..++.|.++||+|||+.-++..++.+++++ .-..++++.++++|++
T Consensus 52 LQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvl 130 (354)
T PF05631_consen 52 LQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVL 130 (354)
T ss_pred hhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHH
Confidence 344444455578999999999999999999999999999999999999999999999999885 5556899999999999
Q ss_pred HHhhhhhh-HHHHHH-HHhhcCC----CCchhHHHHHH-HHHHHHHHHHHHHHHHhhcCcch--HHHHHHhHHHHHHHHH
Q 014820 123 VGVGLGSG-HVFLSW-FLEFVPP----SNRGMWMVIFS-SFWTIGSVSEAIGAWIIMPRLDW--RWLLGLSSIPSFILLA 193 (418)
Q Consensus 123 ~G~~~g~~-~~~~~~-~~~~~~~----~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~w--~~~~~~~~~~~~~~~~ 193 (418)
.|++.... .+--++ +.|.-.. +..+...+... ...++-.+.+.+++.++.+..+. ..+|.....+.++..+
T Consensus 131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~ 210 (354)
T PF05631_consen 131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAV 210 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 99999988 666664 4565332 22233333333 23344455566666666665444 6788776666555533
Q ss_pred H-HhhccCc
Q 014820 194 F-LGFQPES 201 (418)
Q Consensus 194 ~-~~~~~~~ 201 (418)
+ ....+|.
T Consensus 211 ~I~~~W~EN 219 (354)
T PF05631_consen 211 LILKTWPEN 219 (354)
T ss_pred HHHhccccc
Confidence 3 3334443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8e-12 Score=111.88 Aligned_cols=294 Identities=15% Similarity=0.067 Sum_probs=193.1
Q ss_pred chhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHH-HHHHHHHHHHHHhhhhh--HH-HHHHHHHHHHhhhhhh-HHHH
Q 014820 60 TEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLG-EALVTAGAGLLSSFSPN--YI-TLITLRCLVGVGLGSG-HVFL 134 (418)
Q Consensus 60 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~~~~~~~~~~~~--~~-~l~~~r~l~G~~~g~~-~~~~ 134 (418)
+-.+...++..+..++.+|+.|.++|+.|+||..+. ...+..++.+...++++ ++ ..++...+..++.... ..-.
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 345778888888999999999999999998876654 45555555566666544 44 4445566777777777 4456
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh---h---------------cCcchHHHHHHhHHHHHHHH-HHH
Q 014820 135 SWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWII---M---------------PRLDWRWLLGLSSIPSFILL-AFL 195 (418)
Q Consensus 135 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l---~---------------~~~~w~~~~~~~~~~~~~~~-~~~ 195 (418)
+++.+..++++-++..++......+|+.+.-++.... . +...-|.++.+.++--++.. ..+
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~ 217 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI 217 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence 7999999999999998887777777776655443211 1 12345666666665555543 334
Q ss_pred hhccCchhHHHhhcCh-HHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHH
Q 014820 196 GFQPESPRYLCLKGRT-AEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFL 274 (418)
Q Consensus 196 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (418)
+..++.++- +... +...+..+ +-+.+++
T Consensus 218 ~~v~~~~~~---~~~~~~~l~~g~k------------------------------------------------~L~~t~k 246 (438)
T COG2270 218 LNVHDAEKI---SSPPPTALRNGFK------------------------------------------------ELKSTFK 246 (438)
T ss_pred hcccccccc---cccchHHHHHHHH------------------------------------------------HHHHHHH
Confidence 444443320 0000 01111111 1223555
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHh
Q 014820 275 MLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVD 354 (418)
Q Consensus 275 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d 354 (418)
+..+++....+++..+.+. =...++..+...+... .+|.+..+..+.....++.+++|.++.|++.|
T Consensus 247 ~i~~~~~i~~FLiA~~~~~---DGv~til~~~~~fg~~----------~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~ 313 (438)
T COG2270 247 EIRGRKNLVLFLIARFFYI---DGVNTILAMGGVFGAA----------DLGLSSTELLLIGIALSVVAALGAIIAGFLDE 313 (438)
T ss_pred HHhcccchHHHHHHHHHHH---hhHHHHHHHHHHHHHH----------HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555543333333333222 1122222223333321 23688899999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 355 TAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 355 ~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
|+|-|+++..+.++..+..+...+.......+++.++.|.+.++..+..-++.++++|++.-+
T Consensus 314 rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~ 376 (438)
T COG2270 314 RFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEG 376 (438)
T ss_pred HhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccc
Confidence 999999999998888887777777666667777888899999999999999999999988643
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-13 Score=124.61 Aligned_cols=185 Identities=17% Similarity=0.107 Sum_probs=145.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--cCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcc-hHHHHH
Q 014820 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSE--WNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGR-RMGFLG 95 (418)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~~ 95 (418)
-.+.+|+.+.+..+..+......+.+.+..-.+.++ .+.+.+..|++.++..++.+++++.+|+...|.|. |+.++.
T Consensus 28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~ 107 (488)
T KOG2325|consen 28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIV 107 (488)
T ss_pred ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHH
Confidence 346778888888888888877776666555455555 56677788999999999999999999999999997 889999
Q ss_pred HHHHHHHHHHHH-hhh---h-hHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 014820 96 EALVTAGAGLLS-SFS---P-NYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWI 170 (418)
Q Consensus 96 ~~~~~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 170 (418)
+.++..++.++. ++. + ..+.++++|++.|+|.|...+.-.|+++....++|.++++....+..+|.++||.+...
T Consensus 108 s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~ 187 (488)
T KOG2325|consen 108 SFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA 187 (488)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence 999999999988 332 3 57889999999999999999999999999999999999999999889999998888776
Q ss_pred hhcC--cc-----------hHHHHHHhHHHHHHHHH-HHhhccCchh
Q 014820 171 IMPR--LD-----------WRWLLGLSSIPSFILLA-FLGFQPESPR 203 (418)
Q Consensus 171 l~~~--~~-----------w~~~~~~~~~~~~~~~~-~~~~~~~~~~ 203 (418)
+..- -| +..+-++.+++.++.++ +.++++|.++
T Consensus 188 f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 188 FTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 5421 11 22344566666666533 4455666543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.6e-13 Score=128.48 Aligned_cols=170 Identities=14% Similarity=0.100 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHH
Q 014820 27 LAYAGLGWVAEAMEIMILSFVGPTV-KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL 105 (418)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 105 (418)
++.+++..++............|.+ .+++|+|..+.++..+...++..++.+++|+++||+|||+.+.....+..++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~ 339 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFT 339 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 3344444544444444455666754 567999999999999999999999999999999999999887665444443332
Q ss_pred --HHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHH-HHHHHHHHHHHhhc--------
Q 014820 106 --LSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTI-GSVSEAIGAWIIMP-------- 173 (418)
Q Consensus 106 --~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~-------- 173 (418)
.....++.+.+.+.+++.|++.... ........|.+|++.||++.|+.+....+ |..++|.+.+.+.+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~ 419 (467)
T PRK09556 340 LGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPI 419 (467)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccc
Confidence 2233456666777888888654333 33345667999999999999999988886 77899999999988
Q ss_pred ----CcchHHHHHHhHHHHHHHHHHHh
Q 014820 174 ----RLDWRWLLGLSSIPSFILLAFLG 196 (418)
Q Consensus 174 ----~~~w~~~~~~~~~~~~~~~~~~~ 196 (418)
..+|+..|.+..+..++..+..+
T Consensus 420 ~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 420 FGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHH
Confidence 57899999887776666544444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=132.22 Aligned_cols=152 Identities=11% Similarity=0.076 Sum_probs=122.7
Q ss_pred HHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhh--cchHHHHH--HHHHHHHHHHHHhhhhhHHHHH
Q 014820 42 MILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY--GRRMGFLG--EALVTAGAGLLSSFSPNYITLI 117 (418)
Q Consensus 42 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~~~--~~~~~~~~~~~~~~~~~~~~l~ 117 (418)
......+|.+.+++|++..+.+++.++..++..+++++.|+++||. ++|+...+ +.++.+++.++....++++.++
T Consensus 258 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 337 (455)
T TIGR00892 258 FAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLV 337 (455)
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 3334455666678899999999999999999999999999999973 34443333 3344445555666778899999
Q ss_pred HHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCc-chHHHHHHhHHHHHHHHH
Q 014820 118 TLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL-DWRWLLGLSSIPSFILLA 193 (418)
Q Consensus 118 ~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~w~~~~~~~~~~~~~~~~ 193 (418)
+.+++.|++.+.. +...+.+.|.+|++++++++++++....+|.+++|.+++.+.+.. +|+..|++.+++.++..+
T Consensus 338 i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 338 IYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999887 777788899999999999999999999999999999999998876 599999888776655443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.2e-13 Score=124.79 Aligned_cols=150 Identities=14% Similarity=0.091 Sum_probs=126.4
Q ss_pred HHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 014820 44 LSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLV 123 (418)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 123 (418)
.....|.+.++.+.+ +.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.
T Consensus 235 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (392)
T PRK12382 235 IGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALT 312 (392)
T ss_pred HHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 334445555666654 356667778888899999999999999999999999988888888888888888888899999
Q ss_pred Hhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHH
Q 014820 124 GVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL 195 (418)
Q Consensus 124 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~ 195 (418)
|++.+.. +.....+.|.+|+++||++.++++....+|..++|.+.+.+.++.||+..|.+.+++.++..+..
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 313 GAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred HHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 9998877 66667888999999999999999999999999999999999999999999998887777664443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=123.05 Aligned_cols=164 Identities=13% Similarity=0.095 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHH-HHHHHHHHHHHHHh----
Q 014820 34 WVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFL-GEALVTAGAGLLSS---- 108 (418)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~~~~~---- 108 (418)
.+.............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...
T Consensus 231 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~ 310 (402)
T TIGR00897 231 RIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ 310 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455556678888889999999999999999999999999999999999998764 33333333332222
Q ss_pred -hhhhHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHH
Q 014820 109 -FSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187 (418)
Q Consensus 109 -~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~ 187 (418)
..++.+.+++..++.|++.+........+.|.. +++||++.|+.+....+|..++|.+++.+.+..||+..+++.+++
T Consensus 311 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~ 389 (402)
T TIGR00897 311 HFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAAL 389 (402)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 124567777788888988776633345556754 568999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHhhc
Q 014820 188 SFILLAFLGFQ 198 (418)
Q Consensus 188 ~~~~~~~~~~~ 198 (418)
.++..+...++
T Consensus 390 ~~i~~~~~~~~ 400 (402)
T TIGR00897 390 YVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHh
Confidence 77765555443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-12 Score=121.93 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=119.7
Q ss_pred HhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHH
Q 014820 45 SFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAG-LLSSFSPNYITLITLRCLV 123 (418)
Q Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~ 123 (418)
+...|.+.+++|.|..+.+++.+...++..+++++.|+++||+|||+... +..+..++. .+....++.+.+++..++.
T Consensus 226 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 304 (390)
T PRK03545 226 SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFW 304 (390)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 33345556668999999999999999999999999999999999887544 444444443 3344567788888888999
Q ss_pred Hhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHh
Q 014820 124 GVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG 196 (418)
Q Consensus 124 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~ 196 (418)
|++.+.. +.....+.+..| ++|+++++++.....+|..+||++++.+.+++|++..|.+.+++.++..+...
T Consensus 305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSI 377 (390)
T ss_pred HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Confidence 9988766 555667778766 68999999999999999999999999999999999999988877776654433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.5e-13 Score=124.22 Aligned_cols=165 Identities=8% Similarity=-0.015 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhh
Q 014820 34 WVAEAMEIMILSFVGPTVK-SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPN 112 (418)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 112 (418)
.+........+....|.+. +++|+|..+.+.+.+.+.++..++.++.|+++||+|||+.+.....+.++...+....++
T Consensus 214 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~ 293 (394)
T PRK03699 214 ALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDD 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCC
Confidence 3333333344455566665 678999999999999999999999999999999999999998887777777666667777
Q ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHH
Q 014820 113 YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL 191 (418)
Q Consensus 113 ~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~ 191 (418)
.+.+.+..++.|++.+.. +...++..|..| +++++..+.......+|..++|.+.+++.+..||+..+++.+++.++.
T Consensus 294 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~ 372 (394)
T PRK03699 294 PSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVV 372 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHH
Confidence 777777788888877766 666667777776 456788899888899999999999999999999999998888777766
Q ss_pred HHHHhhcc
Q 014820 192 LAFLGFQP 199 (418)
Q Consensus 192 ~~~~~~~~ 199 (418)
.+.....+
T Consensus 373 ~~~~~~~~ 380 (394)
T PRK03699 373 FVMCILLG 380 (394)
T ss_pred HHHHHHHH
Confidence 55444443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-13 Score=125.09 Aligned_cols=152 Identities=14% Similarity=0.096 Sum_probs=124.5
Q ss_pred HhhhhhhhhhcCCCcch----hHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 014820 45 SFVGPTVKSEWNLSSTE----ESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLR 120 (418)
Q Consensus 45 ~~~~~~~~~~~~~s~~~----~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 120 (418)
.+..+.+..+.+.+..+ .+.+.++..++..++.+..|+++||+|||+.+..+..+.+++.+...+.++.+.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (408)
T PRK09874 239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILR 318 (408)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34445444443333322 45666777788889999999999999999999999888888777777778888888999
Q ss_pred HHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHh
Q 014820 121 CLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG 196 (418)
Q Consensus 121 ~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~ 196 (418)
++.|++.+.. +...+.+.+..|+++||+.+++.+....+|..++|.+++.+.+..||+..|++.+++.++..+..+
T Consensus 319 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 319 FLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred HHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 9999999887 777778889999999999999999999999999999999999999999999988887777655443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.6e-13 Score=124.87 Aligned_cols=158 Identities=16% Similarity=0.103 Sum_probs=133.0
Q ss_pred HHhhhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 014820 44 LSFVGPTVKSE-WNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL 122 (418)
Q Consensus 44 ~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 122 (418)
.....|.+.++ +|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.++.++
T Consensus 242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (417)
T PRK10489 242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL 321 (417)
T ss_pred HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 33445666666 89999999999999999999999999999999888888888888888888888888888888888899
Q ss_pred HHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHH-HHHHhhccC
Q 014820 123 VGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL-LAFLGFQPE 200 (418)
Q Consensus 123 ~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~ 200 (418)
.|++.+.. +...+++.|..|++.||+++|++.....+|..+++.+.+++.+..|++..+...+...++. .+....+++
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (417)
T PRK10489 322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE 401 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 99988877 5566788999999999999999999999999999999999999889998888777665554 444455555
Q ss_pred c
Q 014820 201 S 201 (418)
Q Consensus 201 ~ 201 (418)
.
T Consensus 402 ~ 402 (417)
T PRK10489 402 L 402 (417)
T ss_pred c
Confidence 4
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-10 Score=106.11 Aligned_cols=162 Identities=13% Similarity=0.084 Sum_probs=130.9
Q ss_pred HHHHhhhhhhhhh-cCCCcchhH-HHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 014820 42 MILSFVGPTVKSE-WNLSSTEES-LITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITL 119 (418)
Q Consensus 42 ~~~~~~~~~~~~~-~~~s~~~~~-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (418)
..-++..|++.+. .|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++...+-+.
T Consensus 21 PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~ 100 (412)
T PF01770_consen 21 PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLM 100 (412)
T ss_pred CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHH
Confidence 4445566777665 788888774 45566666778888999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc--CcchHHHHHHhHHHHHHHHHHHhh
Q 014820 120 RCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP--RLDWRWLLGLSSIPSFILLAFLGF 197 (418)
Q Consensus 120 r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~w~~~~~~~~~~~~~~~~~~~~ 197 (418)
.+..|++.+.-.+-.+++-...|+++--++.+...++.-+|..++.+++..+.. ..+++...++......+.++..++
T Consensus 101 q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~f 180 (412)
T PF01770_consen 101 QFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALF 180 (412)
T ss_pred HHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988877788899888898888899999999999999999999888765 345565655555555555666677
Q ss_pred ccCchh
Q 014820 198 QPESPR 203 (418)
Q Consensus 198 ~~~~~~ 203 (418)
+|..++
T Consensus 181 LP~~~~ 186 (412)
T PF01770_consen 181 LPMPKR 186 (412)
T ss_pred cCCCCc
Confidence 887654
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-12 Score=126.54 Aligned_cols=144 Identities=16% Similarity=0.077 Sum_probs=113.1
Q ss_pred Hhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHH
Q 014820 45 SFVGPTVK-SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS--PNYITLITLRC 121 (418)
Q Consensus 45 ~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~ 121 (418)
....|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++..+..++.... .+.+.+.+..+
T Consensus 295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (496)
T PRK03893 295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLF 374 (496)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 34556665 5889999999999999999999999999999999999999888877766655443332 34444444555
Q ss_pred HHHhhh-hhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHH
Q 014820 122 LVGVGL-GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPS 188 (418)
Q Consensus 122 l~G~~~-g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~ 188 (418)
+.++.. +.......++.|.+|+++|++++++......+|..++|.+++.+.+++||+..+...+...
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 544433 3335556788899999999999999999999999999999999999999998876655443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-12 Score=120.32 Aligned_cols=149 Identities=16% Similarity=0.131 Sum_probs=121.2
Q ss_pred hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 014820 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGV 125 (418)
Q Consensus 46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 125 (418)
...|.+.++.|.+.++.+++.+...++..+++++.|++.||+|+|+++..+..+.+++.+... . ........++.|+
T Consensus 221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~ 297 (381)
T PRK03633 221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGA 297 (381)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHH
Confidence 346777777899999999999999999999999999999999999999888877777665443 2 2333456677787
Q ss_pred hhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHhh
Q 014820 126 GLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGF 197 (418)
Q Consensus 126 ~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~ 197 (418)
+.+.. +....++.|..|+++++.+.+....+.++|.+++|.+++++.++.+|++.|.+.+.+.++..+..+.
T Consensus 298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 66655 7777888899999888888888888999999999999999999999999999887777665544443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=123.00 Aligned_cols=158 Identities=15% Similarity=0.059 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHH--HHHh
Q 014820 32 LGWVAEAMEIMILSFVGPTVK-SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAG--LLSS 108 (418)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~--~~~~ 108 (418)
...+.............|.+. +++|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+..+.. +...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 305 (394)
T TIGR00883 226 GLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA 305 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555566655 7789999999999999999999999999999999999998775554443332 1222
Q ss_pred h--hhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHH-HHHHHHHHHHHHHHHHHHhhcCcc-hHHHHHH
Q 014820 109 F--SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI-FSSFWTIGSVSEAIGAWIIMPRLD-WRWLLGL 183 (418)
Q Consensus 109 ~--~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~-w~~~~~~ 183 (418)
. .++.+.+.+..++.|++.+.. +...+++.|.+|+++|+++.++ ++.+..+|..++|.+++++.++.| |+..++.
T Consensus 306 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~ 385 (394)
T TIGR00883 306 LLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYY 385 (394)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHH
Confidence 2 246677777788889888777 7778899999999999999998 566677899999999999998887 8877766
Q ss_pred hHHHHH
Q 014820 184 SSIPSF 189 (418)
Q Consensus 184 ~~~~~~ 189 (418)
.....+
T Consensus 386 ~~~~~l 391 (394)
T TIGR00883 386 LAALAL 391 (394)
T ss_pred HHHHHH
Confidence 554433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-12 Score=118.78 Aligned_cols=161 Identities=15% Similarity=0.056 Sum_probs=121.0
Q ss_pred HHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhh-hhHHHHHH
Q 014820 40 EIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS-PNYITLIT 118 (418)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 118 (418)
.........|.+.+++|.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+.+++..+.... ++...+.
T Consensus 220 ~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~- 298 (393)
T PRK09705 220 GYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW- 298 (393)
T ss_pred HHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH-
Confidence 33444455666667789999999999999999999999999999999999999988887777776654432 2322222
Q ss_pred HHHHHHhhhhhh-HHHHHHHHhhcC-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc-hHHHHHHhHHHHHHHHH-H
Q 014820 119 LRCLVGVGLGSG-HVFLSWFLEFVP-PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-WRWLLGLSSIPSFILLA-F 194 (418)
Q Consensus 119 ~r~l~G~~~g~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~~~~~~~~~~~~~~-~ 194 (418)
-++.|++.+.. +.......+..+ +++|++..++.+....++..++|.+.+++.+..| |...|++.++..++..+ .
T Consensus 299 -~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK09705 299 -AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIIT 377 (393)
T ss_pred -HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 24567777766 655555666664 6789999999999999999999999999998765 77778777666665533 3
Q ss_pred HhhccCch
Q 014820 195 LGFQPESP 202 (418)
Q Consensus 195 ~~~~~~~~ 202 (418)
..+.||++
T Consensus 378 ~~~~~~~~ 385 (393)
T PRK09705 378 LRFAPARF 385 (393)
T ss_pred HHhccccc
Confidence 45556654
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-11 Score=117.58 Aligned_cols=157 Identities=13% Similarity=0.022 Sum_probs=114.6
Q ss_pred Hhhhh-hhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhh---h-hhHHHHHHH
Q 014820 45 SFVGP-TVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF---S-PNYITLITL 119 (418)
Q Consensus 45 ~~~~~-~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~ 119 (418)
....| ++.+++|.+......+.....+...++.++.|+++||+|||+++..+.++.+++.+.... . ++.+.+++.
T Consensus 270 ~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (438)
T PRK09952 270 TAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFS 349 (438)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 33344 445678888876666666667777889999999999999999988887766554433322 2 234444555
Q ss_pred HHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHH-HHHHHHHHHHHHHHHHHHhhcC--cchHHHHHHhHHHHHHHHHHH
Q 014820 120 RCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI-FSSFWTIGSVSEAIGAWIIMPR--LDWRWLLGLSSIPSFILLAFL 195 (418)
Q Consensus 120 r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~--~~w~~~~~~~~~~~~~~~~~~ 195 (418)
.++.|++.+.. +...+++.|.+|++.|+.+.++ ++.+..+|+.++|.+.+++.+. .+|+.++.+.++..++..+..
T Consensus 350 ~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~ 429 (438)
T PRK09952 350 IMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA 429 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 66778887776 6677899999999999999998 4555668999999999998763 358888887777777766665
Q ss_pred hhccCc
Q 014820 196 GFQPES 201 (418)
Q Consensus 196 ~~~~~~ 201 (418)
+.++|+
T Consensus 430 ~~~~~~ 435 (438)
T PRK09952 430 LLMKDN 435 (438)
T ss_pred HHcccc
Confidence 666653
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=5e-12 Score=118.52 Aligned_cols=164 Identities=18% Similarity=0.085 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchH--HHH------HHHHHHH
Q 014820 31 GLGWVAEAMEIMILSFVGPTV-KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRM--GFL------GEALVTA 101 (418)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~--~~~------~~~~~~~ 101 (418)
.+..+.............|.+ .+++|.+..+.+++.+...++..++.++.|+++||+|||+ ... .+.++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (399)
T TIGR00893 221 ALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLS 300 (399)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Confidence 333444444444555555554 4668999999999999999999999999999999999996 111 1111111
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc-hHHH
Q 014820 102 GAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-WRWL 180 (418)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~ 180 (418)
+........++.+.......+.+.+.+..+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..| |+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~ 380 (399)
T TIGR00893 301 LLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGA 380 (399)
T ss_pred HHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHH
Confidence 111222223344444444455555555337778899999999999999999999999999999999999999888 9999
Q ss_pred HHHhHHHHHHHHHH
Q 014820 181 LGLSSIPSFILLAF 194 (418)
Q Consensus 181 ~~~~~~~~~~~~~~ 194 (418)
+.+.++..++..+.
T Consensus 381 ~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 381 LMVVAALALIGALS 394 (399)
T ss_pred HHHHHHHHHHHHHH
Confidence 98887776665444
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.8e-15 Score=140.27 Aligned_cols=302 Identities=16% Similarity=0.106 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhh-
Q 014820 32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS- 110 (418)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~- 110 (418)
+..+.+..........++.+.+.|+++.++.|++.+.+-++..+..++..+..+|..|-|.+-.|.++.+++.+++++-
T Consensus 10 ~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPh 89 (539)
T PF03137_consen 10 LLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPH 89 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccH
Confidence 3344446666667778889999999999999999999999999999999999999888888999999999998875530
Q ss_pred ---h----------------------------------------------hHHHHHHHHHHHHhhhhhh-HHHHHHHHhh
Q 014820 111 ---P----------------------------------------------NYITLITLRCLVGVGLGSG-HVFLSWFLEF 140 (418)
Q Consensus 111 ---~----------------------------------------------~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~ 140 (418)
+ -+..++++.++.|+|.... +...+|+=|.
T Consensus 90 f~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDn 169 (539)
T PF03137_consen 90 FLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDN 169 (539)
T ss_dssp --------------------------------------------------------------SSS---------------
T ss_pred hhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccc
Confidence 0 0256778899999999988 8889999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCc----------------------chHHHHHHhHHHHHHHHHHHhhc
Q 014820 141 VPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL----------------------DWRWLLGLSSIPSFILLAFLGFQ 198 (418)
Q Consensus 141 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----------------------~w~~~~~~~~~~~~~~~~~~~~~ 198 (418)
.++++-+..+|+..+...+|.++|.++++.+.+.+ .|..-|++.+++.++..+.++++
T Consensus 170 v~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F 249 (539)
T PF03137_consen 170 VSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF 249 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999888765311 26666777777777766666666
Q ss_pred cCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhc
Q 014820 199 PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS 278 (418)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 278 (418)
|++-+.. ++..++.+...++..+.+. ++.++++ ..+.....-+.-....+++++
T Consensus 250 Pk~lp~~--~~~~~~~~~~~~~~~~~~~----------------~~~~~~~--------~~~~~~~~~~df~~~l~~Ll~ 303 (539)
T PF03137_consen 250 PKKLPGT--SERQEEKESSERKEEDSDK----------------DSFKDPK--------SKKSFGKSIKDFPKALKRLLT 303 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccCCCc--ccccchhhhhhcchhhhhh----------------hcccccc--------cccchhhhhhhHHHHHHHHhc
Confidence 6543211 0000000000000000000 0000000 000000111222334455555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHh-hhhHHHHHHHHHHhhhc
Q 014820 279 SKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSL-AEIPGLLLAAILVDTAG 357 (418)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~g~l~d~~g 357 (418)
+ +.+....+..........+...+.|.|.+. .++.++..+.+......+ +.++|.+++|++++|++
T Consensus 304 N---p~f~~~~la~~~~~~~~~G~~tF~pKylE~----------QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~k 370 (539)
T PF03137_consen 304 N---PVFMCLILAGVFESFIVSGFATFLPKYLES----------QFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFK 370 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhCCCHHHHHHHHhhhhcchhheehheEEEEEEEec
Confidence 5 334444555555666666777788887743 235565555555444333 55688999999999974
Q ss_pred --hhHHHHHHHHHHHHH
Q 014820 358 --RKLSITIMFTLSCLF 372 (418)
Q Consensus 358 --rr~~l~~~~~~~~~~ 372 (418)
.|..+..+.+...++
T Consensus 371 l~~~~~~~~~~v~~~v~ 387 (539)
T PF03137_consen 371 LSARGAAKFCIVVSIVS 387 (539)
T ss_dssp -----------------
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 344444444444333
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-11 Score=116.05 Aligned_cols=146 Identities=10% Similarity=-0.091 Sum_probs=121.4
Q ss_pred hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 014820 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGV 125 (418)
Q Consensus 46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 125 (418)
...|.+.++.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++....++.+.+++..++.|+
T Consensus 226 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 305 (382)
T PRK11128 226 GFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCG 305 (382)
T ss_pred HHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33455557789999999999999999999999999999999999999999999999888888888999999999999999
Q ss_pred hhhhh-HHHHHHHHhhcCCCCchhHHHHHH-HHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHH
Q 014820 126 GLGSG-HVFLSWFLEFVPPSNRGMWMVIFS-SFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLA 193 (418)
Q Consensus 126 ~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~ 193 (418)
+.+.. +....++.+. +++++++..+.++ ...++|..++|.+++.+.+..|+ ..++..+++.++.++
T Consensus 306 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 306 TFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 99887 6666777776 5666789999876 66678889999999999998887 466666665554433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-12 Score=123.46 Aligned_cols=176 Identities=16% Similarity=0.111 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHH
Q 014820 26 VLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL 105 (418)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 105 (418)
.+....+..+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 364 (481)
T TIGR00879 285 LFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLF 364 (481)
T ss_pred HHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33333343443333334445566788888999998889999999999999999999999999999999988888777766
Q ss_pred HHhh-----hh------hHHHHHHHHHHH-HhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014820 106 LSSF-----SP------NYITLITLRCLV-GVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP 173 (418)
Q Consensus 106 ~~~~-----~~------~~~~l~~~r~l~-G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 173 (418)
+..+ .+ +...+....++. +.+.+..+....++.|.+|+++|++++++.+....+|.++++.+.+.+.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~ 444 (481)
T TIGR00879 365 VLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE 444 (481)
T ss_pred HHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6552 11 222222222222 22223235556677999999999999999999999999999999999988
Q ss_pred CcchHHHHHHhHHHHHHHHHHH-hhccCc
Q 014820 174 RLDWRWLLGLSSIPSFILLAFL-GFQPES 201 (418)
Q Consensus 174 ~~~w~~~~~~~~~~~~~~~~~~-~~~~~~ 201 (418)
+.+|+..|++.++++++..+.. ++.||.
T Consensus 445 ~~~~~~~f~~~~~~~~~~~i~~~~~~~~~ 473 (481)
T TIGR00879 445 SIGVGGVFIFFGGLNVLGLIFVYFFLPET 473 (481)
T ss_pred hcCccceehhHHHHHHHHHHHHheecccC
Confidence 8899999988887777765544 445554
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-11 Score=113.42 Aligned_cols=334 Identities=16% Similarity=0.090 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcc-hhHHHHH----HHHHHHHHHHhHHHHhhhhhcchHHHHHHHHH
Q 014820 25 FVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSST-EESLITT----SVFAGLVVGAYAWGLVADNYGRRMGFLGEALV 99 (418)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~s----~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 99 (418)
.......+-.+..++.........+.....++-+.. ..+.... ...+...+.++..|.++||+|||..+....+.
T Consensus 22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~ 101 (463)
T KOG2816|consen 22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFG 101 (463)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHH
Confidence 334444444444444444444444444444433221 2233333 33677889999999999999999999999888
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhh--h-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 014820 100 TAGAGLLSSFSPNYITLITLRCLVGVGLGS--G-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD 176 (418)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~--~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 176 (418)
..+..+...+.. +|.++ +.|+..+. . ....+++++....++|....|+.......+..++|.+++.+.+..|
T Consensus 102 ~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~ 176 (463)
T KOG2816|consen 102 TILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG 176 (463)
T ss_pred HHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 888877776666 33332 44443332 2 5667899999999999999999999999999999999999999889
Q ss_pred hHHHHHHhHHHHHHH-HHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhc
Q 014820 177 WRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLL 255 (418)
Q Consensus 177 w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (418)
.-.+|.+..+..++. .....++||+.... ++.++ . ..+..+. ..
T Consensus 177 ~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~---~~~~~---~-------~~~~~~~------------~~---------- 221 (463)
T KOG2816|consen 177 IALVFLIAAASGILSLLYMLLFLPESLQEK---ERSDA---T-------LRELTPG------------SL---------- 221 (463)
T ss_pred chHHHHHHHHHHHHHHHHHhhccccccCcc---ccccc---c-------ccccCCC------------cc----------
Confidence 999998888877776 44566778764310 00000 0 0000000 00
Q ss_pred ccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHH
Q 014820 256 SSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE 335 (418)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (418)
.........+...+....|..+...+..+... .+.........+......++.+..+.....
T Consensus 222 ---------~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~---------~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~ 283 (463)
T KOG2816|consen 222 ---------DSSHVADAFQSLTKVGPDRLLLLLLLVAFLSS---------LPEAGGASDVLLLYLKAKFGWNKKEFSDLL 283 (463)
T ss_pred ---------cchhhhhhhhhhcccCCCccchHHHHHHHHHH---------HHHhcCceeEEEEEEeeecCcCHHHHHHHH
Confidence 00000011222222222233333333322222 122111110111112234578888888788
Q ss_pred HHHHhhhhHHHHHHH-HHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhccccccc
Q 014820 336 FITSLAEIPGLLLAA-ILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMT 414 (418)
Q Consensus 336 ~~~~~~~~~g~~~~g-~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 414 (418)
......+.++.++.. .+...++.|+....|.....+.....++.++.|..+....+.. ......+...+..+...+++
T Consensus 284 ~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~-~~~~~~pa~~s~~s~~v~~~ 362 (463)
T KOG2816|consen 284 SLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVA-LAGIVFPAIRAFASILVSPE 362 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHH-hhcchhHHHHhHHHhhcccc
Confidence 888888888888777 6777889899888999999999999999888777665555543 34556677888888777777
Q ss_pred ccc
Q 014820 415 LFT 417 (418)
Q Consensus 415 ~R~ 417 (418)
.||
T Consensus 363 e~g 365 (463)
T KOG2816|consen 363 EQG 365 (463)
T ss_pred ccc
Confidence 665
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-11 Score=117.19 Aligned_cols=151 Identities=16% Similarity=0.082 Sum_probs=133.6
Q ss_pred Hhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 014820 45 SFVGPTVK-SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLV 123 (418)
Q Consensus 45 ~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 123 (418)
...+|.+. +++|.+....|++.+.+.+|..+|+++.+++.+|+++++.+..+.++.+++.+..+++++.+...+..++.
T Consensus 238 ~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~ 317 (524)
T PF05977_consen 238 WALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLA 317 (524)
T ss_pred HHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 34567665 56899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHH
Q 014820 124 GVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL 195 (418)
Q Consensus 124 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~ 195 (418)
|++.... ....+.+.+..|++.||+.++++++....+..+|.++.+.+.+.+|-+..+.+.++..++..++.
T Consensus 318 G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 318 GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 9998887 66677889999999999999999999999999999999999999999999887776555544433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-11 Score=118.85 Aligned_cols=160 Identities=14% Similarity=0.025 Sum_probs=118.9
Q ss_pred HHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhh--h-HH-HHHH
Q 014820 43 ILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSP--N-YI-TLIT 118 (418)
Q Consensus 43 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~-~~-~l~~ 118 (418)
......|.+.++.|.+....++......++..++.+++|+++||+|||+.++.+.++.+++.++..... + .+ ....
T Consensus 289 ~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~ 368 (479)
T PRK10077 289 VVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 368 (479)
T ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 344556888888999887778888888889999999999999999999999999999888877665431 1 11 2223
Q ss_pred HHHHHHhhhhhh--HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh------hcCcchHHHHHHhHHHHHH
Q 014820 119 LRCLVGVGLGSG--HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWII------MPRLDWRWLLGLSSIPSFI 190 (418)
Q Consensus 119 ~r~l~G~~~g~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l------~~~~~w~~~~~~~~~~~~~ 190 (418)
+.++.+.+.+.. +....++.|.+|+++|++++|+......+|.++++.+.+.+ .++.+|+..|++.++..++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (479)
T PRK10077 369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL 448 (479)
T ss_pred HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHH
Confidence 344444444432 55678899999999999999999999999988886665544 3567898888887776666
Q ss_pred HHHH-HhhccCch
Q 014820 191 LLAF-LGFQPESP 202 (418)
Q Consensus 191 ~~~~-~~~~~~~~ 202 (418)
..+. +++.||++
T Consensus 449 ~~~~~~~~~~e~~ 461 (479)
T PRK10077 449 AALFMWKFVPETK 461 (479)
T ss_pred HHHHHHhccccCC
Confidence 5444 44566653
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.4e-12 Score=118.38 Aligned_cols=135 Identities=18% Similarity=0.192 Sum_probs=110.8
Q ss_pred hhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHhhh
Q 014820 49 PTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL-LSSFSPNYITLITLRCLVGVGL 127 (418)
Q Consensus 49 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~ 127 (418)
+.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+..+.++.++..+ .....++.+.+.+..++.|+..
T Consensus 263 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (405)
T TIGR00891 263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLV 342 (405)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 344567899999999999999999999999999999999999998888776543333 3334456666667767777666
Q ss_pred hhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc-hHHHHHH
Q 014820 128 GSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-WRWLLGL 183 (418)
Q Consensus 128 g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~~~~ 183 (418)
+.. +....++.|.+|+++|++++|+.+....+|..++|++.+.+.++.| |+..+..
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 343 QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 555 6677888999999999999999999999999999999999999888 8776654
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-11 Score=116.30 Aligned_cols=139 Identities=18% Similarity=0.146 Sum_probs=104.7
Q ss_pred HHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 014820 44 LSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLV 123 (418)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 123 (418)
+....|.+.++.|.+..+.+.+.+...++..++.++.|++.||+|||+.+..+.++.++..+.....++.....+.-++.
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (426)
T PRK12307 250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF 329 (426)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 34456777777899998999999999999999999999999999999999888877766655444332211122222333
Q ss_pred Hhh--hhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHH
Q 014820 124 GVG--LGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 182 (418)
Q Consensus 124 G~~--~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~ 182 (418)
|++ .... .....++.|.+|+++||+++|+......+|..++|.+.+++.+++|+....+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~ 391 (426)
T PRK12307 330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALT 391 (426)
T ss_pred HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 332 2222 4455678899999999999999999999999999999999998888765433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-11 Score=116.13 Aligned_cols=164 Identities=13% Similarity=0.001 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh-hcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhh--cchHHH-HHHHHHHHHHHHHH
Q 014820 32 LGWVAEAMEIMILSFVGPTVKS-EWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY--GRRMGF-LGEALVTAGAGLLS 107 (418)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~-~~~~~~~~~~~~~~ 107 (418)
+..+......+......|.+.+ ++|++..+.++..+.+.++..++.++.|+++||+ |||+.. .....+..++.+..
T Consensus 260 l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~ 339 (452)
T PRK11273 260 IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 339 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHH
Confidence 3333333333444556666654 5789988999999999999999999999999999 555432 22223333333222
Q ss_pred hh--hhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHH-HHHHHHHhhcCcchHHHHHH
Q 014820 108 SF--SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS-EAIGAWIIMPRLDWRWLLGL 183 (418)
Q Consensus 108 ~~--~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~w~~~~~~ 183 (418)
.. ..+.+...++.++.|.+.... .....+..|.+|++.||+++|+.+....+|..+ +|.+.+.+.++.||+..|.+
T Consensus 340 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~ 419 (452)
T PRK11273 340 WLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 419 (452)
T ss_pred HHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHH
Confidence 22 234444445555555543222 333346679999999999999998888887654 79999999999999999988
Q ss_pred hHHHHHHHHHHH
Q 014820 184 SSIPSFILLAFL 195 (418)
Q Consensus 184 ~~~~~~~~~~~~ 195 (418)
.++.+++.++..
T Consensus 420 ~~~~~~~~~~~~ 431 (452)
T PRK11273 420 MIGGSILAVILL 431 (452)
T ss_pred HHHHHHHHHHHH
Confidence 877766654443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-11 Score=113.81 Aligned_cols=139 Identities=9% Similarity=-0.005 Sum_probs=119.3
Q ss_pred CCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHH
Q 014820 56 NLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFL 134 (418)
Q Consensus 56 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~ 134 (418)
+.+....|.+.++..+...++.+..|++.||+|+|+.+.++.++.++...+...+++.+.+++.+++.|++.+.. ....
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567788999999999999999999999999999999999988888888788889998899999999987766 4555
Q ss_pred HHHHhhcCCCCchhHHHH-HHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHH
Q 014820 135 SWFLEFVPPSNRGMWMVI-FSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF 194 (418)
Q Consensus 135 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~ 194 (418)
.+..+..+++.+++..+. ++....+|..+++.+++++.+..||+.+|.+.+++.++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 677888888888887776 678899999999999999999899999999988877665443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.8e-11 Score=112.75 Aligned_cols=154 Identities=13% Similarity=0.100 Sum_probs=119.0
Q ss_pred hhhhhhhhcCCCcchhHHHHH-HHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHH---hhh-hhHHHHHHHHH
Q 014820 47 VGPTVKSEWNLSSTEESLITT-SVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS---SFS-PNYITLITLRC 121 (418)
Q Consensus 47 ~~~~~~~~~~~s~~~~~~~~s-~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~ 121 (418)
..|.+.+++|++.++.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.+.. +.. ++.+.+.+.-+
T Consensus 245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~ 324 (491)
T PRK11010 245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF 324 (491)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 345556778999999999874 6668999999999999999999998877666555543322 232 35555555566
Q ss_pred HHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHhhccC
Q 014820 122 LVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPE 200 (418)
Q Consensus 122 l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 200 (418)
+..++.|.. ....++..+..+++.+++..++.+....+|..+++.+.+++.+..||+..|.+.+++++..++....+++
T Consensus 325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666655 5556788899999999999999999999999988889999999899999998888888777665555443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=119.16 Aligned_cols=299 Identities=14% Similarity=0.098 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHH
Q 014820 27 LAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLL 106 (418)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 106 (418)
+.+.++..+..++....+...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|.-|-|.+-+|.++++++.++
T Consensus 99 l~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll 178 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLL 178 (735)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHH
Confidence 44445566667776677788889999999999999999999999999999999999999999999999999999999887
Q ss_pred Hhhh--------------------h-----------------------------h--HH-HHHHHHHHHHhhhhhh-HHH
Q 014820 107 SSFS--------------------P-----------------------------N--YI-TLITLRCLVGVGLGSG-HVF 133 (418)
Q Consensus 107 ~~~~--------------------~-----------------------------~--~~-~l~~~r~l~G~~~g~~-~~~ 133 (418)
.++- + + ++ .++++.++.|+|.... +..
T Consensus 179 ~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlG 258 (735)
T KOG3626|consen 179 FALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLG 258 (735)
T ss_pred HhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCC
Confidence 6541 0 0 22 4567889999999888 889
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCc-------------------chHHHHHHhHHHHHHHHHH
Q 014820 134 LSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL-------------------DWRWLLGLSSIPSFILLAF 194 (418)
Q Consensus 134 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------------------~w~~~~~~~~~~~~~~~~~ 194 (418)
.+|+=|...+++-+..+|+..+...+|-++|.++++++.+.+ .|+.-|++.+.+.++..+.
T Consensus 259 isYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p 338 (735)
T KOG3626|consen 259 ISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVP 338 (735)
T ss_pred CccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865311 2777788888888888777
Q ss_pred HhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHH
Q 014820 195 LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFL 274 (418)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (418)
++++|++.+.. .+..+. ++.+..+. +....+ ..+...+.-+.-....+
T Consensus 339 ~f~fPk~lp~~---~~~~~~----~~~~~~k~--------------~~~~~~-----------~~~~~~~~ikdfp~s~~ 386 (735)
T KOG3626|consen 339 LFFFPKELPKS---QKRKRA----RDLHVLKT--------------ESGGAK-----------SDKTFGKKIKDFPKSIK 386 (735)
T ss_pred HHhCcccCccc---cccchh----hhhccccc--------------cccccc-----------CCcchhhhHHHHHHHHH
Confidence 78887654311 100000 00000000 000000 00000001122334555
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhh-hhHHHHHHHHHH
Q 014820 275 MLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLA-EIPGLLLAAILV 353 (418)
Q Consensus 275 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~g~l~ 353 (418)
.++++ +.+....+...+....+.+...++|-|++. .++.++..+.......++. ..+|.+++|+++
T Consensus 387 ~ll~N---~if~~~~l~~~~~~~~~~G~~tFlPKyLE~----------Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~ii 453 (735)
T KOG3626|consen 387 RLLSN---PIFMLVVLASVIESLAITGYITFLPKYLET----------QFGISASLANILTGSIGVPAAAVGIFLGGLII 453 (735)
T ss_pred HHhcC---chHHHHHHHHHHHHHHHhhHHHhhHHHHHH----------HcCCCHHHHHHHhhhhhhhhhhhhhhccceee
Confidence 56665 344556666667777788888889988853 3467766666666444443 467889999999
Q ss_pred hhhc--hhHHHHHHHHHHH
Q 014820 354 DTAG--RKLSITIMFTLSC 370 (418)
Q Consensus 354 d~~g--rr~~l~~~~~~~~ 370 (418)
.|+. .|....+..+...
T Consensus 454 kkfkl~~r~~a~~~~~~~~ 472 (735)
T KOG3626|consen 454 KKFKLSARGAAKFVIVCSV 472 (735)
T ss_pred eeecccHHHHHHHHHHHHH
Confidence 9864 4444444433333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-11 Score=115.24 Aligned_cols=165 Identities=15% Similarity=0.074 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhh--cchHHH-HH---HHHHHHHH
Q 014820 31 GLGWVAEAMEIMILSFVGPTVK-SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY--GRRMGF-LG---EALVTAGA 103 (418)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~-~~---~~~~~~~~ 103 (418)
.+..+.............|.+. +++|++..+.+...+.+.++..++.++.|+++||+ ++|+.. .. +.....++
T Consensus 249 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~ 328 (434)
T PRK11663 249 SFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGS 328 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHH
Confidence 3334444444444455566555 67899999999999999999999999999999999 333322 22 11111111
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHH
Q 014820 104 GLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 182 (418)
Q Consensus 104 ~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~ 182 (418)
..... ..+...+.+..+..|++.... ........|.+|+++|++++|+.+....+|..++|.+.+++.++.||+..|+
T Consensus 329 ~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~ 407 (434)
T PRK11663 329 LWLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFV 407 (434)
T ss_pred HHHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHH
Confidence 11122 233333334444445433222 2334466899999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHh
Q 014820 183 LSSIPSFILLAFLG 196 (418)
Q Consensus 183 ~~~~~~~~~~~~~~ 196 (418)
+.+++.++..+..+
T Consensus 408 ~~~~~~~~~~~~~~ 421 (434)
T PRK11663 408 VISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777654443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-11 Score=109.37 Aligned_cols=161 Identities=15% Similarity=0.157 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhh-hhH
Q 014820 35 VAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS-PNY 113 (418)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~ 113 (418)
+........++++-|.+.+..|+|.+.++++.-++.++..+|+.+.|+++|| +.|+.+.....+.++..+...+. ++.
T Consensus 222 l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~ 300 (394)
T COG2814 222 LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASP 300 (394)
T ss_pred HHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchH
Confidence 3344445667778899999999999999999999999999999999999999 99999998888887777766655 455
Q ss_pred HHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHH
Q 014820 114 ITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL 192 (418)
Q Consensus 114 ~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~ 192 (418)
+...+.-++.|++.+.. ......+++ .-++.++.+.++.....++|..+|..+++.+.+++|+....++.+++.++..
T Consensus 301 ~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~ 379 (394)
T COG2814 301 ALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLAL 379 (394)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 66666667777766665 334455566 5578999999999999999999999999999999999999999888888776
Q ss_pred HHHhh
Q 014820 193 AFLGF 197 (418)
Q Consensus 193 ~~~~~ 197 (418)
++.+.
T Consensus 380 ~~~~~ 384 (394)
T COG2814 380 LLALL 384 (394)
T ss_pred HHHHH
Confidence 55443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=119.61 Aligned_cols=169 Identities=15% Similarity=0.093 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCCCcchhHH------------HHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHH
Q 014820 34 WVAEAMEIMILSFVGPTVKSEWNLSSTEESL------------ITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTA 101 (418)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 101 (418)
++......+......|.+.++.|.+..+.+. ...+..++..++.+++++++||+|||+.++++..+.+
T Consensus 297 ~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~ 376 (502)
T TIGR00887 297 WFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILT 376 (502)
T ss_pred HHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Confidence 3333333334444567777888886543221 2334455667788999999999999999988887777
Q ss_pred HHHHHHhhhhh----HHHHHHHHHHHHh-hhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC--
Q 014820 102 GAGLLSSFSPN----YITLITLRCLVGV-GLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR-- 174 (418)
Q Consensus 102 ~~~~~~~~~~~----~~~l~~~r~l~G~-~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-- 174 (418)
++.++..+..+ ...+...-+...+ +.+..+....+.+|.+|++.|+++.++.+....+|.++++.+.+.+.+.
T Consensus 377 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (502)
T TIGR00887 377 VLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGD 456 (502)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccc
Confidence 77665554321 1111111111112 1222245566779999999999999999999999999999999888763
Q ss_pred --------cchHHHHHHhHHHHHHHHHHHhhccCch
Q 014820 175 --------LDWRWLLGLSSIPSFILLAFLGFQPESP 202 (418)
Q Consensus 175 --------~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (418)
.++...|++.+++.++..+..+++||++
T Consensus 457 ~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 457 PTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHheEeccCC
Confidence 3456677777777666655556778864
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-11 Score=104.62 Aligned_cols=177 Identities=18% Similarity=0.110 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHH
Q 014820 23 QCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAG 102 (418)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~ 102 (418)
||..+..........+ ..+.++.+.|.+++.+|+|.+|...+.+...+|..+| ++.|.+.|++|++.++.+|.+...+
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~ 78 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFV 78 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3555555545454444 4577888899999999999999999999999999875 8899999999999999999999999
Q ss_pred HHHHHhhh-------hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014820 103 AGLLSSFS-------PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR 174 (418)
Q Consensus 103 ~~~~~~~~-------~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 174 (418)
+......+ .++|.+.+..++.|.+.+.. .+......+.+| ++||++.|+.-...++++.+-..+...+.+.
T Consensus 79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 98766542 36778888888888887766 555556668887 5899999999999999988877776666554
Q ss_pred cchHHHHHHhHHHHHHHHHHHhhccCch
Q 014820 175 LDWRWLLGLSSIPSFILLAFLGFQPESP 202 (418)
Q Consensus 175 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (418)
..-+..+.....+.++.++..++++..|
T Consensus 158 ~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 158 DPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 3334433333334444455555554443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.4e-11 Score=112.26 Aligned_cols=160 Identities=19% Similarity=0.198 Sum_probs=135.6
Q ss_pred HHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcch--HHHHHHHHHHHHHHHHHhh--------hh
Q 014820 42 MILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRR--MGFLGEALVTAGAGLLSSF--------SP 111 (418)
Q Consensus 42 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~--------~~ 111 (418)
..+.....+..+++|++..+...+.-+..+...+|++++|++.||+|.| ++++++.+++.+..+...+ .+
T Consensus 299 ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~ 378 (477)
T PF11700_consen 299 TIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLK 378 (477)
T ss_pred HHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcc
Confidence 3444444555679999999999999999999999999999999999999 8988888888665555554 57
Q ss_pred hHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc-hHHHHHHhHHHHH
Q 014820 112 NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-WRWLLGLSSIPSF 189 (418)
Q Consensus 112 ~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~~~~~~~~~~ 189 (418)
+.+.+++.-++.|+..|.. +..-++.+|..|+++.+..+|++....-..+.+||++.+.+.+..| -|..+....++.+
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~ 458 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFL 458 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 8888999999999999998 8888999999999999999999999999999999999999987665 8888887777777
Q ss_pred HHHHHHhhccCc
Q 014820 190 ILLAFLGFQPES 201 (418)
Q Consensus 190 ~~~~~~~~~~~~ 201 (418)
+.+++++.++.+
T Consensus 459 ~gl~ll~~v~~~ 470 (477)
T PF11700_consen 459 IGLILLFFVDVE 470 (477)
T ss_pred HHHHHHhhccch
Confidence 766666666543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=114.06 Aligned_cols=130 Identities=22% Similarity=0.167 Sum_probs=115.3
Q ss_pred hhhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHH
Q 014820 46 FVGPTVKSE-WNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPN-YITLITLRCLV 123 (418)
Q Consensus 46 ~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~ 123 (418)
...|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+.+..+..+.+++..+..+.++ .+.+++..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI 311 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 456766655 8999999999999999999999999999999999999999888888888777777764 88888899999
Q ss_pred Hhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 014820 124 GVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL 175 (418)
Q Consensus 124 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 175 (418)
|++.+.. +...+++.|..|+++|+++.++.+....+|..+++.+++.+.++.
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999888 777789999999999999999999999999999999999987754
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-11 Score=114.04 Aligned_cols=140 Identities=20% Similarity=0.144 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhh
Q 014820 32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSP 111 (418)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 111 (418)
+..+.............|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+....+......++....+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (398)
T TIGR00895 257 LLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLF 336 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444555566788888999999999999999999999999999999999999554444433333333333356
Q ss_pred hHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 014820 112 NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWII 171 (418)
Q Consensus 112 ~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 171 (418)
+.+.+++..++.|++.+.. +...+++.|.+|+++|+++.|+......+|..++|.+++++
T Consensus 337 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 337 SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 7777788889999998887 77788999999999999999999999999999999998865
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.2e-11 Score=111.88 Aligned_cols=142 Identities=14% Similarity=0.111 Sum_probs=102.4
Q ss_pred HHHHHHHHHhhhhhhhh-hcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHH-HH---hhhh
Q 014820 37 EAMEIMILSFVGPTVKS-EWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL-LS---SFSP 111 (418)
Q Consensus 37 ~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~-~~---~~~~ 111 (418)
............|.+.+ .+|++..+.++......++..++.++.|+++||+|||++++.+.++..+... .. ...+
T Consensus 250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (434)
T PRK15075 250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAP 329 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33334445555676655 4799999999999999999999999999999999999988876554433221 11 1223
Q ss_pred hHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHH-HHHHHHHHHHHHHHHHHhhcCcchH
Q 014820 112 NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIF-SSFWTIGSVSEAIGAWIIMPRLDWR 178 (418)
Q Consensus 112 ~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~w~ 178 (418)
++..+.+..++.|++.+.. +....++.|.+|+++|+.+.++. +.+..+++.++|.+.+++.++.|++
T Consensus 330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 330 SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 4444445556667777666 55567889999999999999995 4455556778999999998877754
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-11 Score=111.68 Aligned_cols=147 Identities=10% Similarity=0.022 Sum_probs=110.9
Q ss_pred hhhhhhhhcCCCcchhHHHHHHHH-HHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhh------hhhHHHHHHH
Q 014820 47 VGPTVKSEWNLSSTEESLITTSVF-AGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF------SPNYITLITL 119 (418)
Q Consensus 47 ~~~~~~~~~~~s~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~ 119 (418)
..+.+.+|.|++.++.|++..... ....++.++.|++.||+|+|+.+..+..+.++..+.... .++...+...
T Consensus 230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (390)
T TIGR02718 230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC 309 (390)
T ss_pred HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence 345555678999999999988776 466778899999999999999988877665333322211 2233444455
Q ss_pred HHHHHhhhhhh-HHHHHHHHhhcCC-CCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHH
Q 014820 120 RCLVGVGLGSG-HVFLSWFLEFVPP-SNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLA 193 (418)
Q Consensus 120 r~l~G~~~g~~-~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~ 193 (418)
..+.+++.|.. +...+...+..++ +++++.+++.+...++|..++|.+++.+.+..|++..|...+++.++..+
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 55666677776 5666676677665 88999999999999999999999999999988999999887776665433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.1e-11 Score=115.37 Aligned_cols=140 Identities=15% Similarity=0.087 Sum_probs=111.5
Q ss_pred HHHHHHHHhhhhhhhh-hcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhh---hhH
Q 014820 38 AMEIMILSFVGPTVKS-EWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS---PNY 113 (418)
Q Consensus 38 ~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---~~~ 113 (418)
...........|.+.+ .+|.++.+.++......++..++.++.|++.||+|||+++..+.++.+++..+..+. ++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (471)
T PRK10504 274 RIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWY 353 (471)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccH
Confidence 3333445556676665 589999999999999999999999999999999999999998888888776665543 334
Q ss_pred HHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcch
Q 014820 114 ITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDW 177 (418)
Q Consensus 114 ~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w 177 (418)
+.+.+..++.|++.+.. +.......+..|++.|+.+.++.+....+|..+|+.+++.+.+..++
T Consensus 354 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 354 YLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44455667788888876 66677888999999999999999999999999999999887665444
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-10 Score=109.73 Aligned_cols=158 Identities=10% Similarity=-0.068 Sum_probs=100.2
Q ss_pred HHHHhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHh--h--hhhHHHH
Q 014820 42 MILSFVGPTV-KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSS--F--SPNYITL 116 (418)
Q Consensus 42 ~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--~--~~~~~~l 116 (418)
+......|.+ .+++|.+..+.+...++..++..+++++.|+++||+|||+.+.++.++.++..+... . .++....
T Consensus 260 ~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (432)
T PRK10406 260 YTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAA 339 (432)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 3344455554 466899988999989988888899999999999999999988776655433332111 1 2233322
Q ss_pred HHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHH-HHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHH
Q 014820 117 ITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWT-IGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF 194 (418)
Q Consensus 117 ~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~ 194 (418)
+..-.+.++..+.. .....+.+|.+|++.|++++|+.+.... ++....|.+.+.+.....|...+++.++..++..+.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~ 419 (432)
T PRK10406 340 FGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLV 419 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 22222233333443 4455678999999999999999765544 334457777775543323555565555555555444
Q ss_pred Hhhcc
Q 014820 195 LGFQP 199 (418)
Q Consensus 195 ~~~~~ 199 (418)
.++++
T Consensus 420 ~~~l~ 424 (432)
T PRK10406 420 SLMLH 424 (432)
T ss_pred HHHhh
Confidence 44443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-11 Score=115.30 Aligned_cols=151 Identities=11% Similarity=-0.019 Sum_probs=105.5
Q ss_pred hhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchH-------HHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 014820 47 VGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRM-------GFLGEALVTAGAGLLSSFSPNYITLIT 118 (418)
Q Consensus 47 ~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (418)
..|. +.+++|++..+.+.+.+...++..++.+++|+++||+|||+ ...+..++.++..++....++.+...+
T Consensus 274 ~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~ 353 (476)
T PLN00028 274 IIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIV 353 (476)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 3444 45678999999999999999999999999999999998762 233333334444444555566665555
Q ss_pred HHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHhh
Q 014820 119 LRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGF 197 (418)
Q Consensus 119 ~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~ 197 (418)
..++.+++.+.. ....+++.+.. ++.||.+.|+.+.+..+|..+++.+.. ..+..+|+..|++.+++.++..++.++
T Consensus 354 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 354 VMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAF 431 (476)
T ss_pred HHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHh
Confidence 556666665544 44445555654 578999999998887788877776643 223457999999888777777666555
Q ss_pred cc
Q 014820 198 QP 199 (418)
Q Consensus 198 ~~ 199 (418)
++
T Consensus 432 ~~ 433 (476)
T PLN00028 432 IH 433 (476)
T ss_pred ee
Confidence 54
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-10 Score=107.40 Aligned_cols=181 Identities=16% Similarity=0.113 Sum_probs=137.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHH
Q 014820 21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVT 100 (418)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 100 (418)
..|+.....+.+.......+...+..+...+.++-|++..++.++.....+...+..+++..+.||+|||+.++.+..++
T Consensus 266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLM 345 (485)
T ss_pred chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 34454444444444455555566667778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhh---hHH------HHHHHHHHHHhh--hhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 014820 101 AGAGLLSSFSP---NYI------TLITLRCLVGVG--LGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAW 169 (418)
Q Consensus 101 ~~~~~~~~~~~---~~~------~l~~~r~l~G~~--~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 169 (418)
.+..+++.... +.. ..+++.++..++ .|..|+..-+.+|.+|++.|+.++++......+...+-.....
T Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp 425 (485)
T KOG0569|consen 346 AVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFP 425 (485)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887766531 111 123444444444 4444777778899999999999999999999998888887777
Q ss_pred HhhcCcchHHHHHHhHHHHHHH-HHHHhhccCch
Q 014820 170 IIMPRLDWRWLLGLSSIPSFIL-LAFLGFQPESP 202 (418)
Q Consensus 170 ~l~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~ 202 (418)
.+.+.+|- +.|....+++++. +..+..+||++
T Consensus 426 ~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 426 PLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 77776666 6666666666665 55677899984
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-10 Score=110.74 Aligned_cols=130 Identities=15% Similarity=0.178 Sum_probs=104.4
Q ss_pred hhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHH
Q 014820 47 VGPTVKSE-WNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS-PNYITLITLRCLVG 124 (418)
Q Consensus 47 ~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G 124 (418)
..+.+.++ ++ +..+.+++.+...++..++.+++++++||+|+|+++..+.++.+++.+...+. ++.+.+++..++.|
T Consensus 244 ~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 322 (437)
T TIGR00792 244 VQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAG 322 (437)
T ss_pred hhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHH
Confidence 34444433 34 55677888888899999999999999999999999999988888887766654 46677777888889
Q ss_pred hhhhhh-HHHHHHHHhhcC-------CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcch
Q 014820 125 VGLGSG-HVFLSWFLEFVP-------PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDW 177 (418)
Q Consensus 125 ~~~g~~-~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w 177 (418)
++.+.. +...++++|..+ ++.+|...|+.+....+|..+++.+.+.+.+..||
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 323 FGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 998887 666778777765 56689999999999999999999999988776555
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-10 Score=103.27 Aligned_cols=158 Identities=12% Similarity=0.052 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhh---hcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHH
Q 014820 26 VLAYAGLGWVAEAMEIMILSFVGPTVKS---EWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAG 102 (418)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~ 102 (418)
.+.+..+..++............+.+.+ .+|+++++.+...+.+..+..++.++.+++.||+|+||.+.++..+..+
T Consensus 141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~ 220 (310)
T TIGR01272 141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVL 220 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3334444444444344455555555553 3689999999999999999999999999999999999999888888877
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHH
Q 014820 103 AGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLL 181 (418)
Q Consensus 103 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~ 181 (418)
+.++....++...+ ..-++.|++.+.. |...+...+..|++ .+.+.++. ....+|.++.|++.+.+.+..|.+.+|
T Consensus 221 ~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~ 297 (310)
T TIGR01272 221 LSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAF 297 (310)
T ss_pred HHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHH
Confidence 77666555544333 3555788888887 77788777777753 45666765 556789999999999999988988888
Q ss_pred HHhHH
Q 014820 182 GLSSI 186 (418)
Q Consensus 182 ~~~~~ 186 (418)
++..+
T Consensus 298 ~v~~~ 302 (310)
T TIGR01272 298 ALPVP 302 (310)
T ss_pred HHHHH
Confidence 74433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.8e-11 Score=114.10 Aligned_cols=137 Identities=20% Similarity=0.124 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHhhhhhh-HHHHHHHHhh
Q 014820 64 LITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNY--ITLITLRCLVGVGLGSG-HVFLSWFLEF 140 (418)
Q Consensus 64 ~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~-~~~~~~~~~~ 140 (418)
+......+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+..++.+++.+.. +....+..|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33445566777889999999999999999999999988888877766543 44455556666666665 6677888999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHhhccCch
Q 014820 141 VPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESP 202 (418)
Q Consensus 141 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (418)
+|++.|++++|+.+....+|.+++|.+.+ + ...++..++.+.+...++..+..+++||+.
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999999999999999999999988 4 345677778787777777766677788764
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.1e-10 Score=103.97 Aligned_cols=145 Identities=10% Similarity=0.043 Sum_probs=113.6
Q ss_pred hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 014820 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGV 125 (418)
Q Consensus 46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 125 (418)
...|.+.+++|++..+.+.+.+.+.++..++.++.+++.||.+++..+....+......++....++.+.+.+..++.|+
T Consensus 238 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~ 317 (394)
T PRK10213 238 YIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGL 317 (394)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33577778889999999999999999999999999999999654433443333344444444556677888888899999
Q ss_pred hhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHH
Q 014820 126 GLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL 191 (418)
Q Consensus 126 ~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~ 191 (418)
+.+.. +...+++.+..| +++++..++......+|..+|+.+++++.+..|++..+...+...++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 318 TFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 99888 566668888887 567788888888889999999999999999999998888776655444
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-10 Score=107.88 Aligned_cols=139 Identities=12% Similarity=0.014 Sum_probs=113.9
Q ss_pred hhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhh-
Q 014820 53 SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS-PNYITLITLRCLVGVGLGSG- 130 (418)
Q Consensus 53 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~- 130 (418)
++.+.+....+++.+...+.....+++.|++.||+++|+.+..+..+.+++.....+. ++.+.+++..++.|++.+..
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 316 (395)
T PRK10054 237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA 316 (395)
T ss_pred cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677888888888888888999999999999999999988888887777664 57777778889999998876
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHH
Q 014820 131 HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL 192 (418)
Q Consensus 131 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~ 192 (418)
+.....+.+..|++.|++..+..+ ...+|..+||.+++.+.++.|....|++.+....+..
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~ 377 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAW 377 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHH
Confidence 777788999999999999988765 5568999999999999999988888877655554443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-10 Score=104.40 Aligned_cols=147 Identities=8% Similarity=-0.026 Sum_probs=124.6
Q ss_pred hcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HH
Q 014820 54 EWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HV 132 (418)
Q Consensus 54 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~ 132 (418)
+-+.+....|.+.++..+.-++...+..++.+|+|.|+.++++..++++=..++++++|.+.+.+.+.+.|+..+.. ..
T Consensus 253 ~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva 332 (412)
T PF01306_consen 253 SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVA 332 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 33445566899999999999999999999999999999999999999999999999999999999999999999998 77
Q ss_pred HHHHHHhhcCCCCchhHHHH-HHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHH-HhhccC
Q 014820 133 FLSWFLEFVPPSNRGMWMVI-FSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPE 200 (418)
Q Consensus 133 ~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~ 200 (418)
...|+.+.+|+|..++...+ .+.+.++|..+.+.+++.+.|+.|.+.+|++.+.+.+...++ .+.+++
T Consensus 333 ~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 333 AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 77899999999988888888 578899999999999999999999999999888877766444 444543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.2e-10 Score=105.03 Aligned_cols=144 Identities=15% Similarity=0.088 Sum_probs=112.1
Q ss_pred hhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHH
Q 014820 47 VGPTV-KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS-----PNYITLITLR 120 (418)
Q Consensus 47 ~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r 120 (418)
..|.+ .+++|+++.+.++......++..++.++.|+++||+|+|+.+.++.++.+++.++.... .+.+.+++..
T Consensus 237 ~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (406)
T PRK15402 237 LSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGL 316 (406)
T ss_pred HhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHH
Confidence 34544 56789999999998888888999999999999999999999998888777776665543 3566677788
Q ss_pred HHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHH
Q 014820 121 CLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL 191 (418)
Q Consensus 121 ~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~ 191 (418)
++.|++.+.. +....... ..++++||+..+..+....+|..+|+.+++.+.+..++.......++.+++.
T Consensus 317 ~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 317 SLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 8899998876 44444443 3445899999999999999999999999999988777766555544444444
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-10 Score=103.93 Aligned_cols=170 Identities=16% Similarity=0.123 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhh--cchHHHH-HHHHHH
Q 014820 25 FVLAYAGLGWVAEAMEIMILSFVGPTV-KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY--GRRMGFL-GEALVT 100 (418)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~~-~~~~~~ 100 (418)
+.++.+++++++.+..++.+.-..|.+ .|..|.|..++++..+++-.+...|.+++|+++||+ |||.+.. +.+++.
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 467777888999999999888888866 466799999999999999999999999999999996 6776554 445555
Q ss_pred HHHHHHHhhhh--hHHHHHHHHHHHHhhhhh-hHHHHHHHHhhcCCCCchhHHHHHHHHHHH-HHHHHHHHHHHhhcCcc
Q 014820 101 AGAGLLSSFSP--NYITLITLRCLVGVGLGS-GHVFLSWFLEFVPPSNRGMWMVIFSSFWTI-GSVSEAIGAWIIMPRLD 176 (418)
Q Consensus 101 ~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~ 176 (418)
.++.+..-.++ |+++..++.++.|+..-+ .........|..|++--|++.|+...+..+ |.+.+....+++.+.+|
T Consensus 332 ~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g 411 (448)
T COG2271 332 TASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG 411 (448)
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC
Confidence 55555555555 558888888889987644 455566778999999999999999999988 88888888889988899
Q ss_pred hHHHHHHhHHHHHHHHHH
Q 014820 177 WRWLLGLSSIPSFILLAF 194 (418)
Q Consensus 177 w~~~~~~~~~~~~~~~~~ 194 (418)
|...|++..+.+++..++
T Consensus 412 W~g~Fi~~~~~a~l~~ll 429 (448)
T COG2271 412 WDGGFIVLSIAALLAILL 429 (448)
T ss_pred CcchHHHHHHHHHHHHHH
Confidence 999998887777666443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.1e-11 Score=111.02 Aligned_cols=159 Identities=14% Similarity=0.092 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhc--CCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHH-HHHHHHHHHHHHH
Q 014820 29 YAGLGWVAEAMEIMILSFVGPTVKSEW--NLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMG-FLGEALVTAGAGL 105 (418)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~-~~~~~~~~~~~~~ 105 (418)
...+.+++.......+....|.+.+++ +.+..+.+...+...++..++.++.|+++||+|||+. .....++.+++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~ 325 (412)
T TIGR02332 246 LYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWL 325 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHH
Confidence 334444444555555666778777765 5677888999999999999999999999999997774 3344444444433
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCc-chHHHHHH
Q 014820 106 LSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL-DWRWLLGL 183 (418)
Q Consensus 106 ~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~w~~~~~~ 183 (418)
+....++....+++-.+.+++.... +.......|.+|+++|+++.|+.+....+|.+++|.+.+.+.+.. +|+..+.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~ 405 (412)
T TIGR02332 326 LASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWF 405 (412)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHH
Confidence 3222333222222222223332222 223334467899999999999999999999999999999988876 49998876
Q ss_pred hHHH
Q 014820 184 SSIP 187 (418)
Q Consensus 184 ~~~~ 187 (418)
.++.
T Consensus 406 ~~~~ 409 (412)
T TIGR02332 406 VAAL 409 (412)
T ss_pred HHHH
Confidence 6554
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-10 Score=109.72 Aligned_cols=159 Identities=12% Similarity=-0.015 Sum_probs=106.2
Q ss_pred HHHhhhhhhhh-hcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHH---HHHHHHhh--hhhHHHH
Q 014820 43 ILSFVGPTVKS-EWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTA---GAGLLSSF--SPNYITL 116 (418)
Q Consensus 43 ~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~---~~~~~~~~--~~~~~~l 116 (418)
......|.+.+ ..|.+..+.++..+.+.++..+++++.|+++||+|+++....+..+.. ++.+.... ..+.+..
T Consensus 269 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (438)
T TIGR00712 269 GVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVD 348 (438)
T ss_pred HHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 33445565554 579999999999999999999999999999999975432222322221 11111111 2234444
Q ss_pred HHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHH-HHHHHHHHHHhhcCcchHHHHHHhHHHHHHH-HH
Q 014820 117 ITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIG-SVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL-LA 193 (418)
Q Consensus 117 ~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~-~~ 193 (418)
.+..++.|++.... ........|.+|+++||+++|+.+....+| .+++|.+.+.+.++.||...+++.....++. +.
T Consensus 349 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~ 428 (438)
T TIGR00712 349 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 428 (438)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 44445555543222 222345679999999999999998877776 5689999999999899999988776665555 34
Q ss_pred HHhhccCc
Q 014820 194 FLGFQPES 201 (418)
Q Consensus 194 ~~~~~~~~ 201 (418)
....++|+
T Consensus 429 ~~~~~~~~ 436 (438)
T TIGR00712 429 LIVVMIGE 436 (438)
T ss_pred HHHHHhhc
Confidence 44555654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.8e-10 Score=106.93 Aligned_cols=149 Identities=13% Similarity=0.068 Sum_probs=114.1
Q ss_pred hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhh-hhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 014820 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD-NYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVG 124 (418)
Q Consensus 46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 124 (418)
...|.+.++.+.++.+.+++.+...++...+..+.+++.| |++.++.+..+.++.+++.++.+++++++.+.+..++.|
T Consensus 229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 308 (400)
T PRK11646 229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFY 308 (400)
T ss_pred HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4467766666557788898888887777666666666665 567677777888888888878888888888877888888
Q ss_pred hhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCc---ch-HHHHHHhHHHHHHHHHH
Q 014820 125 VGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL---DW-RWLLGLSSIPSFILLAF 194 (418)
Q Consensus 125 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~w-~~~~~~~~~~~~~~~~~ 194 (418)
++.+.. +...+++.+..|+++||+++|+.+....+|..+||.+++++.++. +. ..++...++..++..+.
T Consensus 309 ~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 309 IGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 888877 677788899999999999999999999999999999999998753 32 44555545554444333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.1e-10 Score=104.02 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=101.4
Q ss_pred hhhhhhhcCCCcchhHHHHHHHH-HHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHH---hhh-hhHHHHHHHHHH
Q 014820 48 GPTVKSEWNLSSTEESLITTSVF-AGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS---SFS-PNYITLITLRCL 122 (418)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l 122 (418)
.+.+.+++|++.++.+++.+... ++..++.+++|++.||+|+|+.+..+..+.++..+.. +.. ++.+.+.+.-++
T Consensus 233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 312 (402)
T PRK11902 233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI 312 (402)
T ss_pred HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 34566778999999999886654 5689999999999999999998877776665554332 343 455665555544
Q ss_pred H----Hhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHh
Q 014820 123 V----GVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG 196 (418)
Q Consensus 123 ~----G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~ 196 (418)
. |++.+.. .....++.+.+|. +..++.+...++|...++.+++.+.+..||+..|.+.++++++.+++..
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 313 ENLCGGMGTAAFVALLMALCNRSFSA----TQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 3 4444444 3334455555554 4456666666778877777899999999999999988877777655543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-09 Score=102.54 Aligned_cols=146 Identities=15% Similarity=0.094 Sum_probs=109.2
Q ss_pred hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHH
Q 014820 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSS-FSPNYITLITLRCLVG 124 (418)
Q Consensus 46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G 124 (418)
...|.+.+.+|.+..+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++.. ..++.+...+..++.+
T Consensus 221 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 300 (382)
T PRK10091 221 YIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICC 300 (382)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334566667899999999999999999999999999999999999999988888787776554 3455566666666677
Q ss_pred hhhhhh-HHHHH-HHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC-cchHHHHHHhHHHHHHHHH
Q 014820 125 VGLGSG-HVFLS-WFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR-LDWRWLLGLSSIPSFILLA 193 (418)
Q Consensus 125 ~~~g~~-~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~w~~~~~~~~~~~~~~~~ 193 (418)
++.+.. +.... ...+..+++.++.+ ..+....+|..+||.+++++.+. .+|+..+.+.++..++.+.
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~ 370 (382)
T PRK10091 301 AGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMS 370 (382)
T ss_pred HHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHH
Confidence 765544 43333 33444444555544 34677889999999999998884 6899999888776666543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=8e-10 Score=102.78 Aligned_cols=158 Identities=12% Similarity=0.101 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhcC-CCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhh-hh
Q 014820 35 VAEAMEIMILSFVGPTVKSEWN-LSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS-PN 112 (418)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~ 112 (418)
+..+.....+....+.+.++.| .+....+.+.++..+.=.+.-...+++..|+|.|+++.++.+..++=..+.+.. ++
T Consensus 217 ~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~ 296 (400)
T PF03825_consen 217 FLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDP 296 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3344444445555566667777 677777888888888888999999999999999999999999999998888887 55
Q ss_pred HHHHHHH----HHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHH-HHHHHHHHHHHHHHHhhcCcchH------HH
Q 014820 113 YITLITL----RCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSS-FWTIGSVSEAIGAWIIMPRLDWR------WL 180 (418)
Q Consensus 113 ~~~l~~~----r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~w~------~~ 180 (418)
.+...+. ..+.|+..|.. .....++.+..|++.|+++.+++.. ..++|..+|..+++++.+++|-+ ..
T Consensus 297 ~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~ 376 (400)
T PF03825_consen 297 WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAV 376 (400)
T ss_pred cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 4444333 45689999998 7778899999999999999999765 57899999999999999876644 34
Q ss_pred HHHhHHHHHHHH
Q 014820 181 LGLSSIPSFILL 192 (418)
Q Consensus 181 ~~~~~~~~~~~~ 192 (418)
+.+.+.+.++..
T Consensus 377 ~~v~a~~~~~~~ 388 (400)
T PF03825_consen 377 FLVFAVMALVIL 388 (400)
T ss_pred HHHHHHHHHHHH
Confidence 445555444443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.7e-10 Score=101.35 Aligned_cols=159 Identities=21% Similarity=0.169 Sum_probs=131.9
Q ss_pred HHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 014820 43 ILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL 122 (418)
Q Consensus 43 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 122 (418)
.++.....-..++|++..+..++....++..+++++++|+|.||+|.|+++..+.++..+.++...+......+.+.-.+
T Consensus 271 il~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll 350 (438)
T COG2270 271 ILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLL 350 (438)
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 33333344456999999999999999999999999999999999999999999999998888877777777777778889
Q ss_pred HHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC-cchHHHHHHhHHHHHHHHHHHhhccC
Q 014820 123 VGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR-LDWRWLLGLSSIPSFILLAFLGFQPE 200 (418)
Q Consensus 123 ~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~ 200 (418)
.|...|.. ...-++.++..|+++-++.+|+++.....++.+||.+.+.+.+. .+-|..+....++..+.++++..+|+
T Consensus 351 ~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~ 430 (438)
T COG2270 351 VGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKV 430 (438)
T ss_pred HHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecC
Confidence 99999998 78889999999999999999999999999999999999888763 34666666555555555555555554
Q ss_pred c
Q 014820 201 S 201 (418)
Q Consensus 201 ~ 201 (418)
.
T Consensus 431 ~ 431 (438)
T COG2270 431 P 431 (438)
T ss_pred C
Confidence 3
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=109.77 Aligned_cols=175 Identities=17% Similarity=0.177 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhc--chHHHHHHHHHHHH
Q 014820 25 FVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYG--RRMGFLGEALVTAG 102 (418)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~~ 102 (418)
+.+....+...+...........+|.+.++.+.+..+.+.+.++..+...++.+..|+++|+.. ++.+..++.+..++
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl 377 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL 377 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence 3455555666666777777788889999999999999999999999999999999999999988 45566778888888
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHH-HHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc-hHHH
Q 014820 103 AGLLSSFSPNYITLITLRCLVGVGLGSGHVFL-SWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-WRWL 180 (418)
Q Consensus 103 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~ 180 (418)
+.+.+.+.++++.+...-.+.|++.|...... ..+.|..+.++-..+.|+.....+++..+||++++++.+..+ |...
T Consensus 378 ~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~ 457 (509)
T KOG2504|consen 378 ARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHA 457 (509)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeee
Confidence 88899999999999999999999999985444 578899999999999999999999999999999998888666 9999
Q ss_pred HHHhHHHHHHHHHHHhhcc
Q 014820 181 LGLSSIPSFILLAFLGFQP 199 (418)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~ 199 (418)
|+..++..++....++..+
T Consensus 458 f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 458 FYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred hhhcChHHHHHHHHHHHhH
Confidence 9999988888776666655
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-09 Score=100.22 Aligned_cols=137 Identities=16% Similarity=0.233 Sum_probs=100.1
Q ss_pred Hhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhh-----hhHHHHHH
Q 014820 45 SFVGPTV-KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS-----PNYITLIT 118 (418)
Q Consensus 45 ~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~ 118 (418)
....|.+ .+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.++.... ++.+.+.+
T Consensus 226 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (385)
T TIGR00710 226 FSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIG 305 (385)
T ss_pred HHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 3344544 45789999999999999999999999999999999999999988887777776655443 23445555
Q ss_pred HHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHH-HHHHHHHHHHHhhcCcchHHHHHH
Q 014820 119 LRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTI-GSVSEAIGAWIIMPRLDWRWLLGL 183 (418)
Q Consensus 119 ~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~w~~~~~~ 183 (418)
..++.|++.+.. +.......|..| ++|+++.++.+..... |.+.++.++ .+.+..+|...+..
T Consensus 306 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 306 PMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccccChHHHHHHH
Confidence 677788888877 666677778776 6899999998776654 555555544 55444455544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=106.80 Aligned_cols=150 Identities=17% Similarity=0.082 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcc-hHHHH-HH-HHHHHHHHHHH
Q 014820 32 LGWVAEAMEIMILSFVGPTV-KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGR-RMGFL-GE-ALVTAGAGLLS 107 (418)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~-~~-~~~~~~~~~~~ 107 (418)
+..+.............|.+ .+++|.+..+.++..+...++..++.++.|++.||.++ |+... .. .....++....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 302 (379)
T TIGR00881 223 LGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVY 302 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence 33333333334444445544 46689999999999999999999999999999998643 33222 11 11222222222
Q ss_pred hh--hhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHH
Q 014820 108 SF--SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLL 181 (418)
Q Consensus 108 ~~--~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~ 181 (418)
.. ..+.+...+..++.|+..... +....+..|..|+++|+++.++.+....+|..++|.+.+.+.+++||+..|
T Consensus 303 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 303 WLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred hcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 22 335555566667777655444 555667889999999999999999999999999999999999999998754
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.9e-10 Score=102.70 Aligned_cols=134 Identities=10% Similarity=-0.054 Sum_probs=104.6
Q ss_pred HHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhh-cchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 014820 42 MILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY-GRRMGFLGEALVTAGAGLLSSFSPNYITLITLR 120 (418)
Q Consensus 42 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 120 (418)
.......|.+.++.|.+..+.+.+.+...++..+++++.|++.||+ +||+.+..+.++.+++.+...+.++.+... .-
T Consensus 214 ~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 292 (355)
T TIGR00896 214 YSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WA 292 (355)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HH
Confidence 3344556777778899999999999999999999999999999999 566677777777777777666655433322 44
Q ss_pred HHHHhhhhhh-HHHHHHHHhhc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 014820 121 CLVGVGLGSG-HVFLSWFLEFV-PPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD 176 (418)
Q Consensus 121 ~l~G~~~g~~-~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 176 (418)
++.|++.|.. +...+.+.+.. ++++++...++.+....+|..++|.+.+++.++.|
T Consensus 293 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 293 LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6789988887 66666665544 45677999999998889999999999999987654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-09 Score=117.14 Aligned_cols=141 Identities=15% Similarity=0.037 Sum_probs=118.3
Q ss_pred hhhhhhhcCCCcc-hhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 014820 48 GPTVKSEWNLSST-EESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVG 126 (418)
Q Consensus 48 ~~~~~~~~~~s~~-~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 126 (418)
.+.+.+.+|++.. +.+++.+...++..++++++|+++||+++|+.+.++.++.+++.++..+..+.+.+++..++.|++
T Consensus 256 ~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 335 (1146)
T PRK08633 256 PAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFS 335 (1146)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3445577899998 999999999999999999999999999999999999888888888888888888888889999999
Q ss_pred hhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc-CcchHHHHHHhHHHH
Q 014820 127 LGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-RLDWRWLLGLSSIPS 188 (418)
Q Consensus 127 ~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~w~~~~~~~~~~~ 188 (418)
.+.. +...+++.+..|++.||+++++.+....+|.++++.+++.+.. .+++...+++.+.+.
T Consensus 336 ~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 399 (1146)
T PRK08633 336 AGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVT 399 (1146)
T ss_pred HHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 9887 6677888999999999999999999999999888877776643 245555565544443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-09 Score=98.88 Aligned_cols=167 Identities=16% Similarity=0.107 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcc---hHHHH-HHHHHHHHH
Q 014820 28 AYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGR---RMGFL-GEALVTAGA 103 (418)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr---r~~~~-~~~~~~~~~ 103 (418)
+.+.+.+++.....+.+....|.+.++.|.+.. .+...++..+...++ .++++||..| |+... ...++.++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~ 270 (368)
T TIGR00903 195 WIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAF 270 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 333344555555555666677888788787754 566655555555555 4677777654 33333 234444444
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHH
Q 014820 104 GLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 182 (418)
Q Consensus 104 ~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~ 182 (418)
.....+..+.+..++.-++.|++.... +...++.+|.+|++.|++++|+.+....+|+.++|++.+.+.. +-+..|.
T Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~ 348 (368)
T TIGR00903 271 FLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFT 348 (368)
T ss_pred HHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHH
Confidence 444455555555555556667666655 6667889999999999999999999999999999988887763 6777777
Q ss_pred HhHHHHHHHHHHHhhccC
Q 014820 183 LSSIPSFILLAFLGFQPE 200 (418)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~ 200 (418)
+.+++.++..+....+++
T Consensus 349 ~~~~~~~i~~~~~~~~~~ 366 (368)
T TIGR00903 349 FLAILITIAFAIALLLPN 366 (368)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 777776666544444444
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.15 E-value=8e-10 Score=106.87 Aligned_cols=133 Identities=12% Similarity=0.057 Sum_probs=110.2
Q ss_pred HHHHhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhh----hhhHHHH
Q 014820 42 MILSFVGPTVK-SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF----SPNYITL 116 (418)
Q Consensus 42 ~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~l 116 (418)
.......|.+. +.+|.+..+.++......++..++.++.|++.||+|||+.+.++..+.+++..+..+ ..+++.+
T Consensus 272 ~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 351 (485)
T TIGR00711 272 YGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAI 351 (485)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 33344556554 457999999999999999999999999999999999999999998888888876652 2356667
Q ss_pred HHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014820 117 ITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR 174 (418)
Q Consensus 117 ~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 174 (418)
....++.|++.+.. +.......+..|+++|+++.++.+....+|..+|+.+.+.+.++
T Consensus 352 ~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 352 ALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788999999887 55566677889999999999999999999999999998877653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.9e-09 Score=99.62 Aligned_cols=154 Identities=16% Similarity=0.195 Sum_probs=114.6
Q ss_pred HhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhh---c-chH-HHHHHHHHHHHHHHHHhhh----hhHHH
Q 014820 45 SFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY---G-RRM-GFLGEALVTAGAGLLSSFS----PNYIT 115 (418)
Q Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~---G-rr~-~~~~~~~~~~~~~~~~~~~----~~~~~ 115 (418)
....+.+.+++|+++++.....+...+...+ .++.|.++|-+ | ||| -++++.++.+++.+..+.. .+...
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~ 88 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI 88 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence 3456788899999999998888887776655 68899999976 3 444 4556666665555544443 34666
Q ss_pred HHHHHHHHHhhhhhh-HHHHHHHHhhcC--CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHH
Q 014820 116 LITLRCLVGVGLGSG-HVFLSWFLEFVP--PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL 192 (418)
Q Consensus 116 l~~~r~l~G~~~g~~-~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~ 192 (418)
..+.-++..+|.... .+..+.+.|... ++.||...+.......+|.+++..+++.+.+..+++..|.+.+++..+..
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~ 168 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML 168 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence 666777888888887 666778877763 33478888888889999999999999999999999999988877766665
Q ss_pred HHHhhcc
Q 014820 193 AFLGFQP 199 (418)
Q Consensus 193 ~~~~~~~ 199 (418)
+..+++.
T Consensus 169 ~~~~~~~ 175 (433)
T PF03092_consen 169 IVALFLL 175 (433)
T ss_pred HHHHHhh
Confidence 4444443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.7e-10 Score=99.28 Aligned_cols=163 Identities=17% Similarity=0.110 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhh
Q 014820 31 GLGWVAEAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF 109 (418)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 109 (418)
++.++........++..+|. +.++|+.++.+.|...+.+.+...+..+.+|+++||+|.+|++......++++..+.++
T Consensus 224 sllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~ 303 (417)
T COG2223 224 SLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSL 303 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHc
Confidence 34444444444455555665 46789999999999999999999999999999999999999999988888888887766
Q ss_pred hh-------hHHHHH----HHHHHHHhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc-h
Q 014820 110 SP-------NYITLI----TLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-W 177 (418)
Q Consensus 110 ~~-------~~~~l~----~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w 177 (418)
.. +....+ ...+..|+|.|.. ...+...+| ++-|.+.|+.....++|+..-|...+...+..| +
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsv---fk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~ 379 (417)
T COG2223 304 FLTGFGHGGSFVVFVAVFLALFVFAGLGNGSV---FKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSY 379 (417)
T ss_pred cccccccCcchHHHHHHHHHHHHHhccCcchh---eeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccH
Confidence 53 333333 3445555555543 444555554 478899999999999999888888887777666 8
Q ss_pred HHHHHHhHHHHHHHHHHHhh
Q 014820 178 RWLLGLSSIPSFILLAFLGF 197 (418)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~ 197 (418)
...|++.....+++.+..+.
T Consensus 380 ~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 380 TGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888887777777655443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.9e-09 Score=100.89 Aligned_cols=134 Identities=16% Similarity=0.073 Sum_probs=101.1
Q ss_pred HHHhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhh--hHHHHHHH
Q 014820 43 ILSFVGPTVK-SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSP--NYITLITL 119 (418)
Q Consensus 43 ~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~ 119 (418)
......|.+. +.+|.+....++......++..++.++.+++.||+|+|+.+.++.++.+++.+...+.+ +.+.+++.
T Consensus 246 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 325 (448)
T PRK09848 246 AVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVA 325 (448)
T ss_pred HHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 3334455443 44676655455545555677888999999999999999999999988888877766643 56777777
Q ss_pred HHHHHhhhhhh-HHHHHHHHhhcCCC-------CchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 014820 120 RCLVGVGLGSG-HVFLSWFLEFVPPS-------NRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD 176 (418)
Q Consensus 120 r~l~G~~~g~~-~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 176 (418)
.++.|+|.+.. +...+..+|..|.+ ++|...|+.+....+|..+++.+.+.+.+..|
T Consensus 326 ~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 326 LAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88899998887 66677777777643 46999999999999999999998887754443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-09 Score=91.93 Aligned_cols=147 Identities=16% Similarity=0.131 Sum_probs=112.2
Q ss_pred hhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHhhhh
Q 014820 50 TVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGA-GLLSSFSPNYITLITLRCLVGVGLG 128 (418)
Q Consensus 50 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~r~l~G~~~g 128 (418)
.+.+.+|+|+...+.+.+..+.-.++.+++.|.++||+|++...+.+..+..+. -....+ +.+.=+++..++|+...
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYS 367 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHH
Confidence 457889999999999999999999999999999999999999887765554433 222222 33334566778899888
Q ss_pred hh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc---hHHHHHH-hHHHHHHHHHHHhhc
Q 014820 129 SG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD---WRWLLGL-SSIPSFILLAFLGFQ 198 (418)
Q Consensus 129 ~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~---w~~~~~~-~~~~~~~~~~~~~~~ 198 (418)
.. ....+.++...|+++.|++.|..++..++|-.+.|++++.+.++-| |--+|.+ .+.+++....+.+.+
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 87 5678899999999999999999999999999999999999987544 4334433 344444444444443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-09 Score=114.44 Aligned_cols=144 Identities=12% Similarity=0.077 Sum_probs=114.5
Q ss_pred HHhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhh------------
Q 014820 44 LSFVGPTV-KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS------------ 110 (418)
Q Consensus 44 ~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------------ 110 (418)
+....|.+ .+.+|.+..+.|++.+.+.++..+++++.|+++|+.++++.+..+.++.+++.+...+.
T Consensus 244 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (1140)
T PRK06814 244 VLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLK 323 (1140)
T ss_pred HHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccccc
Confidence 33345555 45589999999999999999999999999999998888776666666555555433332
Q ss_pred --------hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc-CcchHHH
Q 014820 111 --------PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-RLDWRWL 180 (418)
Q Consensus 111 --------~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~w~~~ 180 (418)
++.+.+++..++.|++.+.. +...+++.+.+|++.||+++|+.+....+|..+++++.+.+.+ ..++...
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~ 403 (1140)
T PRK06814 324 SILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWI 403 (1140)
T ss_pred chhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 67778888889999998887 6777899999999999999999999999999999999888863 4566666
Q ss_pred HHHhHHH
Q 014820 181 LGLSSIP 187 (418)
Q Consensus 181 ~~~~~~~ 187 (418)
+++.+++
T Consensus 404 ~~~~~~~ 410 (1140)
T PRK06814 404 ILFIALA 410 (1140)
T ss_pred HHHHHHH
Confidence 6555444
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-09 Score=98.76 Aligned_cols=117 Identities=17% Similarity=0.184 Sum_probs=94.4
Q ss_pred HHHHhhhhhhhhhcCCCcchhHHHHHHHH-HHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhh----------
Q 014820 42 MILSFVGPTVKSEWNLSSTEESLITTSVF-AGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS---------- 110 (418)
Q Consensus 42 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---------- 110 (418)
.......|.+.+++|++.++.+.+.+... ++..++.+++|++.||+|||+.+..+.++.+++..+..+.
T Consensus 226 ~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (356)
T TIGR00901 226 SAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGIT 305 (356)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 33444556665669999999998887665 6788999999999999999999988888877776655442
Q ss_pred -hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 014820 111 -PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWT 158 (418)
Q Consensus 111 -~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 158 (418)
++.+.+..+.++.+++.+.. +...+++.|.+|+++||+.+|+.+...+
T Consensus 306 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 306 FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 35577778888999999988 7788899999999999999999887654
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.2e-09 Score=96.91 Aligned_cols=132 Identities=17% Similarity=0.082 Sum_probs=90.0
Q ss_pred hhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh
Q 014820 51 VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG 130 (418)
Q Consensus 51 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 130 (418)
..+++|.+..+.+.+.+...++..++.++.+++.||+|||+.+..+.++..++.++..+.++.+..+..-.+.+.+.+..
T Consensus 230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 309 (392)
T PRK10473 230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVG 309 (392)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999888888887777666554444444444444433
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHH
Q 014820 131 HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI 186 (418)
Q Consensus 131 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~ 186 (418)
. ......+..|.++|+ +......+++..+++.+++++.+..|+.......+.
T Consensus 310 ~-~~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 310 F-GVAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred h-HHHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 1 112334455555543 333344456666666667676666666654444443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-09 Score=103.37 Aligned_cols=131 Identities=15% Similarity=0.090 Sum_probs=108.9
Q ss_pred HHHhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhh---hhhHHHHHH
Q 014820 43 ILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF---SPNYITLIT 118 (418)
Q Consensus 43 ~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~ 118 (418)
......|. ++..+|.|+.+.|.......++..++.++.|++.||+|+|+.+..+.++.+++.++... .++.+...+
T Consensus 277 ~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (495)
T PRK14995 277 GFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWG 356 (495)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 33344454 45568999999999999999999999999999999999999998888888777665543 245666677
Q ss_pred HHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014820 119 LRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP 173 (418)
Q Consensus 119 ~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 173 (418)
..++.|++.|.. +.....+.+..|+++++.+.++.+....+|..+|+.+.+.+.+
T Consensus 357 ~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 357 LMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999988 6667778888999999999999999999999999999887743
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.8e-09 Score=98.60 Aligned_cols=137 Identities=8% Similarity=-0.005 Sum_probs=108.1
Q ss_pred hhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-
Q 014820 52 KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG- 130 (418)
Q Consensus 52 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~- 130 (418)
++.+|+++.+.++..+.+.++..++.++.|++.||+|+|+++..+.++.+++..+..+.++.+ .+..-.+.|++.+..
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~ 365 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY 365 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999988888777766666655543 245567889999988
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc-hHHHHHHhHHHHHHH
Q 014820 131 HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-WRWLLGLSSIPSFIL 191 (418)
Q Consensus 131 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~~~~~~~~~~~~ 191 (418)
|...+...+..|+ +.+.+.++... ..+|..++|.+.+.+.+..| -|..|.+..+..+..
T Consensus 366 P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~ 425 (438)
T PRK10133 366 PTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_pred HHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 8888888888765 46777777764 44678888888888888887 788887655444443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-07 Score=93.57 Aligned_cols=151 Identities=14% Similarity=0.071 Sum_probs=120.6
Q ss_pred hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhh-hcchHHHHHHHHHHHHHHHHHhhhhh--------HHHH
Q 014820 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YGRRMGFLGEALVTAGAGLLSSFSPN--------YITL 116 (418)
Q Consensus 46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~--------~~~l 116 (418)
.+..++.+.+|++.+.+..+...+....-+...++|+++|+ +|+++.+.++.++..++.++.+++.. ....
T Consensus 9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~ 88 (654)
T TIGR00926 9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLD 88 (654)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence 33445566789999999888888888889999999999996 69999999999999999887766421 2335
Q ss_pred HHHHHHHHhhhhhh-HHHHHHHHhhcCCC---CchhHHHHHHHHHHHHHHHHHHHHHHhhcC-------cchHHHHHHhH
Q 014820 117 ITLRCLVGVGLGSG-HVFLSWFLEFVPPS---NRGMWMVIFSSFWTIGSVSEAIGAWIIMPR-------LDWRWLLGLSS 185 (418)
Q Consensus 117 ~~~r~l~G~~~g~~-~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-------~~w~~~~~~~~ 185 (418)
+++..+..+|.|++ +...+...|.++++ +|-....++..+.++|+.+++++..++.++ .+|...|.+.+
T Consensus 89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~ 168 (654)
T TIGR00926 89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA 168 (654)
T ss_pred HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence 56777788888988 88889999998764 366778888899999999999998888743 36999999888
Q ss_pred HHHHHHHHHHh
Q 014820 186 IPSFILLAFLG 196 (418)
Q Consensus 186 ~~~~~~~~~~~ 196 (418)
+..++.+++..
T Consensus 169 i~m~ia~lvf~ 179 (654)
T TIGR00926 169 ILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHH
Confidence 88777655543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-09 Score=98.35 Aligned_cols=126 Identities=24% Similarity=0.324 Sum_probs=105.7
Q ss_pred HHHHHHhhhhhh-hhhcCCC-cchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhh---hhHH
Q 014820 40 EIMILSFVGPTV-KSEWNLS-STEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS---PNYI 114 (418)
Q Consensus 40 ~~~~~~~~~~~~-~~~~~~s-~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---~~~~ 114 (418)
.........|.+ .+++|.+ ..+.+.+.+...++..++.++.|++.||+|+|+..........+..+..... ++..
T Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
T PF07690_consen 221 VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPV 300 (352)
T ss_dssp HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHH
T ss_pred HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 334455666765 7889999 7899999999999999999999999999999888877777777666655544 3557
Q ss_pred HHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHH
Q 014820 115 TLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEA 165 (418)
Q Consensus 115 ~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 165 (418)
..++..++.|++.+.. +...+++.|..|+++||++.|+.+...++|..++|
T Consensus 301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 7777888899998888 88888999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.1e-09 Score=96.82 Aligned_cols=140 Identities=10% Similarity=-0.049 Sum_probs=109.2
Q ss_pred hhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 014820 50 TVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGS 129 (418)
Q Consensus 50 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 129 (418)
...+.+|.++.+.|++.+...++..++++..+++.||.++|+++..+. +.++...+..+.++++...+..++.|++.+.
T Consensus 231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~ 309 (393)
T PRK11195 231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGF 309 (393)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence 445668999999999999999999999999999999999999888775 3444444556667777777788889999888
Q ss_pred h-HHHHHHHHhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHH
Q 014820 130 G-HVFLSWFLEFVPPSN-RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL 191 (418)
Q Consensus 130 ~-~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~ 191 (418)
. +...+.+.+..|++. +|++.++.+....+|..++..+.+.+ ...|-+..+.+.+...++.
T Consensus 310 ~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 372 (393)
T PRK11195 310 FVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVA 372 (393)
T ss_pred hhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHH
Confidence 7 556677777766654 79999999999999999999888865 4566666665544443333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.6e-08 Score=93.00 Aligned_cols=120 Identities=10% Similarity=-0.031 Sum_probs=84.3
Q ss_pred hhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHh---h-hhhHHHHHHHHHHHHh
Q 014820 50 TVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSS---F-SPNYITLITLRCLVGV 125 (418)
Q Consensus 50 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l~G~ 125 (418)
.+.+++|.++.+.+++.+...++..++.++.|++.||+|||+.+..+..+..+..+... . ..+.+.+.+.-.+.+.
T Consensus 220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (377)
T PRK11102 220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVG 299 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44566899999999999999999999999999999999999999888766544333222 2 2244444444444444
Q ss_pred hhhhh-HHHHHHHHhhcCCCCchhHHHHHHHH-HHHHHHHHHHHHHH
Q 014820 126 GLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSF-WTIGSVSEAIGAWI 170 (418)
Q Consensus 126 ~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~ 170 (418)
+.+.. ......+.|..| ++++++.++.+.. ..+|..++++++..
T Consensus 300 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 300 CVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA 345 (377)
T ss_pred HHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444 444456667666 8899999986553 45777777766543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.2e-09 Score=100.58 Aligned_cols=172 Identities=14% Similarity=0.031 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHH--------HHH
Q 014820 26 VLAYAGLGWVAEAMEIMILSFVGPTV-KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGF--------LGE 96 (418)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~--------~~~ 96 (418)
.++...+..+........+...+|.+ .+++|.+..+.++..++..++..++.++.|+++||+++|+.. ..+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 341 (465)
T TIGR00894 262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNG 341 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 34444555555555555555666765 466899999999999999999999999999999998755321 111
Q ss_pred HHHH--HHHHHHHhh-hhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014820 97 ALVT--AGAGLLSSF-SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM 172 (418)
Q Consensus 97 ~~~~--~~~~~~~~~-~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 172 (418)
.... ++..+.... ..+....++.-.+.+.+.+.. ........|..| +.+|.+.++.+....+|..++|.+.+.+.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~ 420 (465)
T TIGR00894 342 IGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNIL 420 (465)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 1111 111111222 234444444445555554444 333334446665 58999999999999999999999999887
Q ss_pred cC---cchHHHHHHhHHHHHHHHHHHhhc
Q 014820 173 PR---LDWRWLLGLSSIPSFILLAFLGFQ 198 (418)
Q Consensus 173 ~~---~~w~~~~~~~~~~~~~~~~~~~~~ 198 (418)
+. .+|+..|.+.++..++..+...+.
T Consensus 421 ~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 421 SQDSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 64 348888888877777665554443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.6e-08 Score=92.16 Aligned_cols=133 Identities=12% Similarity=0.100 Sum_probs=98.5
Q ss_pred hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHH---hh--hhhHHHHHHHH
Q 014820 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS---SF--SPNYITLITLR 120 (418)
Q Consensus 46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~--~~~~~~l~~~r 120 (418)
...|.+.+++|.+..+.++......++..++.+..+++.||+|+|+......+..+++.+.. .. .++.+.+++..
T Consensus 224 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (401)
T PRK11043 224 TGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPF 303 (401)
T ss_pred HHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34566777889999999998888888999999999999999999997766555544443322 12 34555555666
Q ss_pred HHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHH
Q 014820 121 CLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRW 179 (418)
Q Consensus 121 ~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~ 179 (418)
.+.|++.+.. +.......+..| ++||++.++.+.....+...++.+.+.+.+......
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 304 CVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence 7778887776 666666667665 689999999998888888888888888866433333
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.8e-07 Score=82.10 Aligned_cols=131 Identities=18% Similarity=0.051 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhc
Q 014820 63 SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFV 141 (418)
Q Consensus 63 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~ 141 (418)
+.+.-+-.+-..+..+.+.+..+|...+.=..++.++..++.++.++++|.+.-+++-.+.+++.|.. .....+ ...+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence 44555556667777788888999987665566777788889999999999998888889999988887 444444 4566
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc-CcchHHHHHHhHHHHHHHHHHHhhc
Q 014820 142 PPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-RLDWRWLLGLSSIPSFILLAFLGFQ 198 (418)
Q Consensus 142 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~w~~~~~~~~~~~~~~~~~~~~~ 198 (418)
++ ...+-+..|.+.++++|+..-..+.+ ..+-|..+.+...+.++..+.++++
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~ 194 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFL 194 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 54 35677888888888888776555554 2344777777666665554444443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.7e-08 Score=93.47 Aligned_cols=136 Identities=10% Similarity=-0.028 Sum_probs=100.4
Q ss_pred HHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhh-----hhhHHH
Q 014820 41 IMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF-----SPNYIT 115 (418)
Q Consensus 41 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~ 115 (418)
........+++.++..-+.+..+++.+...++..++.+++++++||+|+|+.+.++..+.+++.+...+ .++.+.
T Consensus 247 ~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
T PRK10429 247 SNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALL 326 (473)
T ss_pred HHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHH
Confidence 344444455555554445566777777777899999999999999999999998888776665554332 345667
Q ss_pred HHHHHHHHHhhhhhh-HHHHHHHHhhcC-------CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 014820 116 LITLRCLVGVGLGSG-HVFLSWFLEFVP-------PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD 176 (418)
Q Consensus 116 l~~~r~l~G~~~g~~-~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 176 (418)
+++.-++.|++.+.. ....++++|..+ .+..|...+......-+|..+++.+.+++.+..|
T Consensus 327 ~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 327 IVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 777778888888887 666778888855 3445668888999999999999998888765443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-08 Score=93.26 Aligned_cols=162 Identities=9% Similarity=-0.067 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHh-hh--
Q 014820 34 WVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSS-FS-- 110 (418)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~-~~-- 110 (418)
+++.+.....++...|.+.++ ..+.........+..+...+..+++|+++||+|+|+++.++.+...++..... ..
T Consensus 261 y~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~ 339 (462)
T PRK15034 261 YLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPG 339 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444455555655444 22333333334455677888999999999999999999988887777654321 11
Q ss_pred ---hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCC---------------------CCchhHHHHHHHHHHHHHHHHH
Q 014820 111 ---PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPP---------------------SNRGMWMVIFSSFWTIGSVSEA 165 (418)
Q Consensus 111 ---~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~ 165 (418)
.+++.+.+..+...++.|.. .....++.+.+|+ ++-|.+.|+.....++|+.+.|
T Consensus 340 ~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p 419 (462)
T PRK15034 340 TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIP 419 (462)
T ss_pred ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhh
Confidence 24555555554444444544 4445566666663 1567888999999999998888
Q ss_pred HHHHHhhcC-cchHHHHHHhHHHHHHHHHHHh
Q 014820 166 IGAWIIMPR-LDWRWLLGLSSIPSFILLAFLG 196 (418)
Q Consensus 166 ~~~~~l~~~-~~w~~~~~~~~~~~~~~~~~~~ 196 (418)
.+.+...+. .++...|+...+..+++.++.+
T Consensus 420 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w 451 (462)
T PRK15034 420 QAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW 451 (462)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 776665543 4577788877777777655433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.4e-06 Score=77.82 Aligned_cols=348 Identities=12% Similarity=-0.025 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCC-CcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHH--
Q 014820 29 YAGLGWVAEAMEIMILSFVGPTVKSEWNL-SSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL-- 105 (418)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~-- 105 (418)
.+....+....+.-+..+..+.+..+..- +--..+...-.-.+...+.++..|.+.||..|.++...+.+.--++..
T Consensus 6 ~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s 85 (432)
T PF06963_consen 6 RLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAAS 85 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHH
Confidence 34555666666666666666666555521 322334444455566788889999999999999987766554333222
Q ss_pred --HHh--hh--h----h---HHHHHHHHHHHHhhhhhhHHHHHHH--Hhh----c--CCCCchhHHHHHHHHHHHHHHHH
Q 014820 106 --LSS--FS--P----N---YITLITLRCLVGVGLGSGHVFLSWF--LEF----V--PPSNRGMWMVIFSSFWTIGSVSE 164 (418)
Q Consensus 106 --~~~--~~--~----~---~~~l~~~r~l~G~~~g~~~~~~~~~--~~~----~--~~~~r~~~~~~~~~~~~~g~~~~ 164 (418)
+.. +. + + ...+++.-.+.|.-.-......... -|| . +++.+.+..+...-.--+-.+++
T Consensus 86 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~cklla 165 (432)
T PF06963_consen 86 CALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLA 165 (432)
T ss_pred HHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 111 11 1 1 1222222222332222222222211 234 2 34455566666666667788999
Q ss_pred HHHHHHhhcCcchHHHHHHhHHHHHHHHHH-Hhhcc----CchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCC
Q 014820 165 AIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQP----ESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRS 239 (418)
Q Consensus 165 ~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (418)
|++.+.+.+..+.+....+.+...++.++. ++++. ..|+ +..+++.++.. ...+.+
T Consensus 166 Pl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~------------------~~~~~~ 226 (432)
T PF06963_consen 166 PLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESE------------------SSSDEE 226 (432)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCcccc------------------cccccc
Confidence 999999988888888777776666665443 22221 1111 10010000000 000000
Q ss_pred CCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 014820 240 TLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSP 319 (418)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (418)
+..+..+.....+. ..+.-++....|+..++.+....-+...+.++. .-+.......|+...
T Consensus 227 -~~~~~~~~~~~~~~-------~~~~~~~~~~~w~~Y~~q~vflas~alalLY~T----VLsf~~lmt~yl~~~------ 288 (432)
T PF06963_consen 227 -SSSESSSDPSILKR-------LWNPLRTIIRGWRTYFRQPVFLASFALALLYFT----VLSFGGLMTAYLKSQ------ 288 (432)
T ss_pred -ccccccchhhHHHH-------HHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH----HhcCcHHHHHHHHHC------
Confidence 00000000000000 000001111233444443333333333333332 222222333444322
Q ss_pred CccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh----hch---hH---HHHHHH
Q 014820 320 LMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----YQS---NI---LTTGLL 389 (418)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~----~~~---~~---~~~~~~ 389 (418)
|.++...+..-...++.++.|.++..++.+|+|..+.-.++.....+++.+... ..+ .. ......
T Consensus 289 -----G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi 363 (432)
T PF06963_consen 289 -----GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGI 363 (432)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Confidence 588888888888999999999999999999999988877777655544433322 221 11 122222
Q ss_pred HHHHHHHHhhhHhHhhhhccccccccccC
Q 014820 390 FGARMCVMGAFTVSLIYAAEVKLMTLFTV 418 (418)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~e~~p~~~R~~ 418 (418)
++.-++.-+.--...-+..|..|++.|+.
T Consensus 364 ~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~ 392 (432)
T PF06963_consen 364 ALSRIGLWSFDLAVTQIMQENVPESERGA 392 (432)
T ss_pred HHHHHHHHhhhHHHHHhhcccCCHHHhhH
Confidence 23333333333567788889999999873
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-09 Score=92.72 Aligned_cols=130 Identities=14% Similarity=0.042 Sum_probs=95.9
Q ss_pred HHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh-hhHHHHHHHHhhcCCCCchh
Q 014820 70 FAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLG-SGHVFLSWFLEFVPPSNRGM 148 (418)
Q Consensus 70 ~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g-~~~~~~~~~~~~~~~~~r~~ 148 (418)
.+.-.-|.++.+++.||+|||+.+..+.+++++..++...+.+-....+..|..-++.. +..+.+.|..|.+|.+.|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 44567788999999999999999999999999998887776543333333333333333 33677788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHhhccCc
Q 014820 149 WMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPES 201 (418)
Q Consensus 149 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 201 (418)
+.|.-.....+|+++.|+++ +....+-..+..+.+.+.++..+...++|-.
T Consensus 471 gvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiE 521 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIE 521 (528)
T ss_pred chhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeec
Confidence 99999999999999999998 3223333445556666666666666666643
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.8e-08 Score=93.29 Aligned_cols=118 Identities=14% Similarity=0.052 Sum_probs=89.7
Q ss_pred chhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHh-h-hhhHHHHHHHHHHHHhhhhhh-HHHHHH
Q 014820 60 TEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSS-F-SPNYITLITLRCLVGVGLGSG-HVFLSW 136 (418)
Q Consensus 60 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~-~-~~~~~~l~~~r~l~G~~~g~~-~~~~~~ 136 (418)
+..+.+.....+...++.+++++++||+|+|+.+..+.++.++...... . .++.+.+++..++.|++.+.. +...+.
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666778888999999999999999999888776665433222 2 356777788888999999887 777778
Q ss_pred HHhhcC-------CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcch
Q 014820 137 FLEFVP-------PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDW 177 (418)
Q Consensus 137 ~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w 177 (418)
++|..+ .+..|...+.......+|..+++.+++.+.+..|+
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 888775 33456778889999999999999999887765544
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-08 Score=96.44 Aligned_cols=141 Identities=17% Similarity=0.227 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhh--
Q 014820 34 WVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSP-- 111 (418)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-- 111 (418)
.++............+++.++.--++...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+
T Consensus 234 ~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~ 313 (428)
T PF13347_consen 234 FFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPG 313 (428)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhh
Confidence 344444444455555666555322336778888899999999999999999999999999999999999999888876
Q ss_pred hHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcC-------CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014820 112 NYITLITLRCLVGVGLGSG-HVFLSWFLEFVP-------PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR 174 (418)
Q Consensus 112 ~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 174 (418)
|.+.+++..++.|++.+.. ....+.++|..+ +++.|...|+......+|..+++.+.+.+.+.
T Consensus 314 ~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 314 SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988 666778877776 34468889999999999999999888877543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5e-08 Score=87.90 Aligned_cols=151 Identities=26% Similarity=0.368 Sum_probs=119.8
Q ss_pred HHHHHHHhhhhhhhhhcCCCc--chhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhh--HH
Q 014820 39 MEIMILSFVGPTVKSEWNLSS--TEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPN--YI 114 (418)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~s~--~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~--~~ 114 (418)
.+........+.+..+++.+. .+.++..+.+.++..+++++.|.+.||+|||+.+..+.....++.++..+..+ .+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA 95 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence 555556666777777777666 47899999999999999999999999999998888887765666666666665 89
Q ss_pred HHHHHHHHHHhhhhhh-HHHHHHHHhhcCC-CCchhHHHHHHH-HHHHHHHHHHHHHHHhhcC--cchHHHHHHhHHHHH
Q 014820 115 TLITLRCLVGVGLGSG-HVFLSWFLEFVPP-SNRGMWMVIFSS-FWTIGSVSEAIGAWIIMPR--LDWRWLLGLSSIPSF 189 (418)
Q Consensus 115 ~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~--~~w~~~~~~~~~~~~ 189 (418)
.+++.|+..|++.+.. +...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+... .+||..|........
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999999999877 7788899999998 688999999888 5788888888777666543 578885555444443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.7e-08 Score=89.25 Aligned_cols=143 Identities=13% Similarity=0.039 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhh----hcchHHHHH-HHHHHHHH
Q 014820 29 YAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN----YGRRMGFLG-EALVTAGA 103 (418)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~~~~-~~~~~~~~ 103 (418)
......+..-+.+..--.+.+++..+.|++..-.+.+-....+...+.+|+.|..+|| |||||.++. +.++..++
T Consensus 36 ~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~ 115 (498)
T KOG0637|consen 36 SVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVS 115 (498)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHH
Confidence 3333333334444455556677888999999888888888888889999999999994 799887664 56666777
Q ss_pred HHHHhhhhhHHH------------HHHHHHHHH-----hhhhhh-HHHHHHHHhhcCCCCchh-HHHHHHHHHHHHHHHH
Q 014820 104 GLLSSFSPNYIT------------LITLRCLVG-----VGLGSG-HVFLSWFLEFVPPSNRGM-WMVIFSSFWTIGSVSE 164 (418)
Q Consensus 104 ~~~~~~~~~~~~------------l~~~r~l~G-----~~~g~~-~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~ 164 (418)
.++..++.++.. .-+..++.| ++.-.. ...-+++.|...++++.+ +.+.+....++|+.+|
T Consensus 116 l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLG 195 (498)
T KOG0637|consen 116 LFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLG 195 (498)
T ss_pred HhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceee
Confidence 777777654321 222333334 344444 566789999988777777 9999999999999999
Q ss_pred HHHHHHh
Q 014820 165 AIGAWII 171 (418)
Q Consensus 165 ~~~~~~l 171 (418)
..++++.
T Consensus 196 Y~~g~y~ 202 (498)
T KOG0637|consen 196 YALGSYL 202 (498)
T ss_pred eeccccc
Confidence 8888743
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-07 Score=87.15 Aligned_cols=128 Identities=17% Similarity=0.075 Sum_probs=94.0
Q ss_pred hhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHH-HHHHHHHHhh--hhhHHHHHHHHHHHHhh
Q 014820 50 TVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV-TAGAGLLSSF--SPNYITLITLRCLVGVG 126 (418)
Q Consensus 50 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~-~~~~~~~~~~--~~~~~~l~~~r~l~G~~ 126 (418)
.+.+.+|.+..+.+++.....++..+++++.+++.||+|++......... ..+....... ..+.+.+.+..++.|++
T Consensus 233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 312 (394)
T PRK11652 233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFG 312 (394)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 33445899999999999999999999999999999999844333222222 2222122222 23566777788889999
Q ss_pred hhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchH
Q 014820 127 LGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 178 (418)
Q Consensus 127 ~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~ 178 (418)
.+.. +...++..|..| +++|.+.++.+....+|..+++.+++.+.....+.
T Consensus 313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 364 (394)
T PRK11652 313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFS 364 (394)
T ss_pred HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence 9887 777788888886 67899999999999999999999988876554333
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-07 Score=89.95 Aligned_cols=134 Identities=13% Similarity=0.054 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHhhhhhcc-----hHHH--HHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHh
Q 014820 62 ESLITTSVFAGLVVGAYAWGLVADNYGR-----RMGF--LGEALVTAGAGLLSSF---------SPNYITLITLRCLVGV 125 (418)
Q Consensus 62 ~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-----r~~~--~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~ 125 (418)
.+++.+...+...+.+++..++-.|.+| +... .+|.++.+++.+..++ ..|++++++..++.|+
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 6788999999999998886654444443 3333 6788888888777664 4689999999999999
Q ss_pred hhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHH
Q 014820 126 GLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL 195 (418)
Q Consensus 126 ~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~ 195 (418)
|.... +...+++.+..|++.||+.+|++..+..+|..+++.+.....+..+|...|...++..++..++.
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVM 464 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence 99998 88899999999999999999999999999999999998887777788888877777666654443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-07 Score=88.54 Aligned_cols=138 Identities=7% Similarity=-0.085 Sum_probs=99.8
Q ss_pred hhhhhhhhhc--CCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 014820 46 FVGPTVKSEW--NLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLV 123 (418)
Q Consensus 46 ~~~~~~~~~~--~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 123 (418)
..++.+.++. +.+....+...+.+..+..+|.++++++.||+++|+++.++.++..+..++..+.++... ...-++.
T Consensus 253 s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~ 331 (410)
T TIGR00885 253 TFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLC 331 (410)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence 4444444443 334444455667777888999999999999999999999998888888888888776544 4556677
Q ss_pred Hhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCc------chHHHHHHhHH
Q 014820 124 GVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL------DWRWLLGLSSI 186 (418)
Q Consensus 124 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~w~~~~~~~~~ 186 (418)
|++.+.. |...+...+..+++.+..+.++.. + .+|.++.|++.+.+.|+. +.+..|++..+
T Consensus 332 glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~ 399 (410)
T TIGR00885 332 SAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-A-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLL 399 (410)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-H-HhccchHHHHHHHHHHHhcccccCccchHHHHHHH
Confidence 7777666 888888888888665433444333 3 399999999999999853 46777765433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-07 Score=89.42 Aligned_cols=131 Identities=13% Similarity=0.012 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHHHHHhHH----HHhhhhhcchHHHHHHHHHHHHHHHHHhhhhh---------HHHHHHHHHHHHhhhh
Q 014820 62 ESLITTSVFAGLVVGAYAW----GLVADNYGRRMGFLGEALVTAGAGLLSSFSPN---------YITLITLRCLVGVGLG 128 (418)
Q Consensus 62 ~~~~~s~~~~~~~i~~~~~----g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~r~l~G~~~g 128 (418)
.+++.++..+...+..++. +++.||++..+.+.+|.++.+++.+......+ .++++...++.|+|.+
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 5777778887777777776 55566666667888999999999888776654 4678889999999999
Q ss_pred hh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc----------CcchHHHHHHhHHHHHHHH
Q 014820 129 SG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP----------RLDWRWLLGLSSIPSFILL 192 (418)
Q Consensus 129 ~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----------~~~w~~~~~~~~~~~~~~~ 192 (418)
.. +...+++.+..|++.||+++|++..+..+|..++..+...... ..+....|...++..++..
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a 472 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIA 472 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 98 8899999999999999999999998888888887777653221 1235677777776655443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.7e-08 Score=89.75 Aligned_cols=147 Identities=14% Similarity=0.108 Sum_probs=131.5
Q ss_pred hhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh
Q 014820 51 VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG 130 (418)
Q Consensus 51 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 130 (418)
-.++++..+..-|........|-.+.-++.+++.+|+|+-+++..++.+.++=.+..+...|.|+.+...+++|+..+..
T Consensus 397 Hled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~ali 476 (618)
T KOG3762|consen 397 HLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALI 476 (618)
T ss_pred HHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHH
Confidence 35778878888898888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHhhcCCCCchhHHHHHH-HHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHhh
Q 014820 131 -HVFLSWFLEFVPPSNRGMWMVIFS-SFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGF 197 (418)
Q Consensus 131 -~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~ 197 (418)
....+|++...||+.|..+.++.+ ...++|-.+|.++++.+.+.++-|..|.+.++.+++.++....
T Consensus 477 Waa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 477 WAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 777889999999999999999965 5568999999999999999999999999988888777655444
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.7e-08 Score=93.58 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=117.3
Q ss_pred hhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhh----------hhhHHHHHHHHHH
Q 014820 53 SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF----------SPNYITLITLRCL 122 (418)
Q Consensus 53 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l 122 (418)
+.+|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+.... .++.+.+...-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 568999999999999999999999999999999999999999999998887755421 1333445556788
Q ss_pred HHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc-----hHHHHHH---hHHHHHHHHH
Q 014820 123 VGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-----WRWLLGL---SSIPSFILLA 193 (418)
Q Consensus 123 ~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-----w~~~~~~---~~~~~~~~~~ 193 (418)
.+++.+.. .+...++.+..|++.+|+..++.++..++|..+++.+++.+.+..| ++..+.. ..+..++.+.
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~ 440 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP 440 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence 88888887 6677899999999999999999999999999999999999887655 4433332 2333344444
Q ss_pred HHhhccC
Q 014820 194 FLGFQPE 200 (418)
Q Consensus 194 ~~~~~~~ 200 (418)
...++|+
T Consensus 441 ~~~llP~ 447 (468)
T TIGR00788 441 LLHLLPR 447 (468)
T ss_pred HHHhCCC
Confidence 4556775
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.1e-07 Score=85.86 Aligned_cols=117 Identities=14% Similarity=0.016 Sum_probs=76.5
Q ss_pred CcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhhhhh-HHHH
Q 014820 58 SSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSP--NYITLITLRCLVGVGLGSG-HVFL 134 (418)
Q Consensus 58 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~-~~~~ 134 (418)
++...+.+.+.+.++..++.+++++++||+|+|+.+..+..+.++..++..+.+ +.+.+++.-++.|++.+.. +...
T Consensus 261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~ 340 (460)
T PRK11462 261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW 340 (460)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677788888999999999999999999987755554444333333322 2334445556677777665 4445
Q ss_pred HHHHhhcC-------CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014820 135 SWFLEFVP-------PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR 174 (418)
Q Consensus 135 ~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 174 (418)
++++|..+ .+..|...+......-+|..+++.+++.+.+.
T Consensus 341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~ 387 (460)
T PRK11462 341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY 387 (460)
T ss_pred HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56665554 33335556777778888888888887776543
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.7e-08 Score=68.95 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 014820 37 EAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITL 116 (418)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (418)
.+..++.+.+.+|.+.+|.++|.++.|++.+..++||.+|++...++.++..+++.+..+.+...+..+.+++.++.+.+
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999887665
Q ss_pred H
Q 014820 117 I 117 (418)
Q Consensus 117 ~ 117 (418)
.
T Consensus 84 ~ 84 (85)
T PF06779_consen 84 S 84 (85)
T ss_pred h
Confidence 3
|
Note that many members are hypothetical proteins. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.7e-07 Score=84.83 Aligned_cols=141 Identities=18% Similarity=0.180 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhh-
Q 014820 34 WVAEAMEIMILSFVGPTVKSE-WNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSP- 111 (418)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~- 111 (418)
+++........+....++.+. +|.++.+..+.......+..++.++..++++|+|+|+++.++.++.+++.++.-+.+
T Consensus 245 ~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~ 324 (467)
T COG2211 245 NLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA 324 (467)
T ss_pred HHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC
Confidence 333444444445555555433 455666667778888888888899999999999999999999999999999887765
Q ss_pred -hHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcC-------CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014820 112 -NYITLITLRCLVGVGLGSG-HVFLSWFLEFVP-------PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR 174 (418)
Q Consensus 112 -~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 174 (418)
+.+.+++..++.+++.+.. +...++++|..+ .+.-|...+......=+|.+++..+.++....
T Consensus 325 ~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~ 396 (467)
T COG2211 325 GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA 396 (467)
T ss_pred cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888999999999887 666666654433 34447777888888888888888777776543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.8e-07 Score=79.94 Aligned_cols=157 Identities=14% Similarity=0.090 Sum_probs=123.8
Q ss_pred HHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhh-cchHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014820 37 EAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY-GRRMGFLGEALVTAGAGLLSSFSPNYIT 115 (418)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (418)
+....++.-..+|.+..|.|+|..+.|++.+...+.....++....+++|. .+|+..+....++.++.+.+.+.+.-..
T Consensus 220 qS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~ 299 (395)
T COG2807 220 QSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLP 299 (395)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 344445666778999999999999999999999999999999999999965 5677777788888888887777764433
Q ss_pred HHHHHHHHHhhhhhh-HHHHHHHHhhc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC-cchHHHHHHhHHHHHHHH
Q 014820 116 LITLRCLVGVGLGSG-HVFLSWFLEFV-PPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR-LDWRWLLGLSSIPSFILL 192 (418)
Q Consensus 116 l~~~r~l~G~~~g~~-~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~w~~~~~~~~~~~~~~~ 192 (418)
++- -++.|+|.|.. +.....+.... .+++-++..++.+....+=...||.+.+++.|. .+|+..+...+...+...
T Consensus 300 ~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~ 378 (395)
T COG2807 300 ILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLML 378 (395)
T ss_pred HHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHH
Confidence 333 48999999887 88888877555 456667777888888888888899999999874 579988877766666654
Q ss_pred HH
Q 014820 193 AF 194 (418)
Q Consensus 193 ~~ 194 (418)
+.
T Consensus 379 i~ 380 (395)
T COG2807 379 IF 380 (395)
T ss_pred HH
Confidence 44
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.5e-06 Score=76.66 Aligned_cols=108 Identities=16% Similarity=0.065 Sum_probs=88.0
Q ss_pred hHHH-HHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHH-HHHHHh
Q 014820 62 ESLI-TTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVF-LSWFLE 139 (418)
Q Consensus 62 ~~~~-~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~ 139 (418)
.|.. .++.+..+.+++++++.+.|+.|+|..++++...........-+ .|-+.++++-.+.|+|.+..... ..+++|
T Consensus 51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~ 129 (461)
T KOG3098|consen 51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTS 129 (461)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhh
Confidence 3443 78888889999999999999999999999999888776554444 46778888999999999988544 569999
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 014820 140 FVPPSNRGMWMVIFSSFWTIGSVSEAIGAWI 170 (418)
Q Consensus 140 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 170 (418)
..+++++.+..++.-.....+.++|......
T Consensus 130 ~st~~tie~Nisi~Wai~~~~li~Ggi~l~~ 160 (461)
T KOG3098|consen 130 NSTRETIERNISIFWAIGQSSLIIGGIILFI 160 (461)
T ss_pred cCChhhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence 9999999999999887777777777555433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-05 Score=72.21 Aligned_cols=143 Identities=9% Similarity=0.004 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCC-----cchhHHHHHHHHHHHHHH-HhHHHHhhhhhcchHHHHHHHHH
Q 014820 26 VLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLS-----STEESLITTSVFAGLVVG-AYAWGLVADNYGRRMGFLGEALV 99 (418)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-----~~~~~~~~s~~~~~~~i~-~~~~g~l~dr~Grr~~~~~~~~~ 99 (418)
.++...+..++....++. +-++++.+.++ .....++-+...+...+. .++.+++++|++|++++-.....
T Consensus 8 k~~~~~l~fF~il~~Y~i----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~ 83 (472)
T TIGR00769 8 KFLPLFLMFFCILFNYTI----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISP 83 (472)
T ss_pred HHHHHHHHHHHHHHHHHH----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHH
Confidence 344444444444443333 35566666553 346788888877777666 89999999999999988776666
Q ss_pred HHHHHHHHhhh--h-----------------------------hHHHHHHHHHHHHhhhhhh-H-HHHHHHHhhcCCCCc
Q 014820 100 TAGAGLLSSFS--P-----------------------------NYITLITLRCLVGVGLGSG-H-VFLSWFLEFVPPSNR 146 (418)
Q Consensus 100 ~~~~~~~~~~~--~-----------------------------~~~~l~~~r~l~G~~~g~~-~-~~~~~~~~~~~~~~r 146 (418)
+.....++++. + +.|...+.-+...+-.... + .-..+.+|.+..++-
T Consensus 84 F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qa 163 (472)
T TIGR00769 84 FLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEA 163 (472)
T ss_pred HHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 55555544432 1 1122223333333333333 3 456788999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014820 147 GMWMVIFSSFWTIGSVSEAIGAWIIM 172 (418)
Q Consensus 147 ~~~~~~~~~~~~~g~~~~~~~~~~l~ 172 (418)
.|..++...+.++|.++++.+..++.
T Consensus 164 kRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 164 KRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-07 Score=77.51 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=74.7
Q ss_pred HHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 014820 43 ILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL 122 (418)
Q Consensus 43 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 122 (418)
..++..-++.+.+|....++|.+.........+...+.|-++|+-|||+.-+.-++...+++ +.-.++.+-.++++|.+
T Consensus 55 LQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~L 133 (454)
T KOG4332|consen 55 LQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVL 133 (454)
T ss_pred hcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhh
Confidence 34455555667888888899888777777777888889999999999997665555444433 34457889999999999
Q ss_pred HHhhhhhh-HHHHH-HHHhhcC
Q 014820 123 VGVGLGSG-HVFLS-WFLEFVP 142 (418)
Q Consensus 123 ~G~~~g~~-~~~~~-~~~~~~~ 142 (418)
.|++.+.. ..--+ +++|.-.
T Consensus 134 GGiaTsLLFSaFEsWliaEHne 155 (454)
T KOG4332|consen 134 GGIATSLLFSAFESWLIAEHNE 155 (454)
T ss_pred hhHHHHHHHHHHHHHHHHHhhh
Confidence 99999887 66656 5677763
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-08 Score=91.79 Aligned_cols=179 Identities=14% Similarity=0.022 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHH--------HH-HHHHHHHHHHHhHHHHhhhhhcchHHHHH
Q 014820 25 FVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESL--------IT-TSVFAGLVVGAYAWGLVADNYGRRMGFLG 95 (418)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--------~~-s~~~~~~~i~~~~~g~l~dr~Grr~~~~~ 95 (418)
+.++..+..+|......+..+.....+.++.|+.+.+... .. -+...++..|-.+...++|+.|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 5666777788887777777888888888888876554433 11 11222333466677789999999999999
Q ss_pred HHHHHHHHHHHHhhhhhH----HHHHHHHHHHHhhhhhhHHHH--HHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 014820 96 EALVTAGAGLLSSFSPNY----ITLITLRCLVGVGLGSGHVFL--SWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAW 169 (418)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~----~~l~~~r~l~G~~~g~~~~~~--~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 169 (418)
|.+++.+..+..+...|. .-+++...+..+....-|... .+-+|.+|.+.|+.+-|+..+..-.|++++.....
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 999999999888887651 222222233333222223333 34579999999999999999999999999999999
Q ss_pred Hhhc-----CcchHHHHHHhHHHHHHHHHHHhhccCchh
Q 014820 170 IIMP-----RLDWRWLLGLSSIPSFILLAFLGFQPESPR 203 (418)
Q Consensus 170 ~l~~-----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (418)
++.+ ..+.+.++++.+.+.++..+..+++||+.+
T Consensus 464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred HhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 9988 778999999999999998888888998753
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.2e-08 Score=87.37 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=119.3
Q ss_pred HHHhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhc--chHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 014820 43 ILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYG--RRMGFLGEALVTAGAGLLSSFSPNYITLITL 119 (418)
Q Consensus 43 ~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (418)
..-+.++. +.+.+..+..+.|...--..+.+.++..+.|.++||++ |-.....+++..++++....+++++.++.+-
T Consensus 288 fLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp 367 (464)
T KOG3764|consen 288 FLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVP 367 (464)
T ss_pred HhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhh
Confidence 33344444 45666755558888888889999999999999999999 5444456677777777778889999999999
Q ss_pred HHHHHhhhhhh-HHHHHHHHhhcCC---C---CchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHH
Q 014820 120 RCLVGVGLGSG-HVFLSWFLEFVPP---S---NRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL 192 (418)
Q Consensus 120 r~l~G~~~g~~-~~~~~~~~~~~~~---~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~ 192 (418)
++..|++.+.. ....+...+..+. + .-|...++...++++|..+||.+++.+.+.+|++|.-.+.++..++..
T Consensus 368 ~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iya 447 (464)
T KOG3764|consen 368 NFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYA 447 (464)
T ss_pred hHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHH
Confidence 99999988887 5555555555443 2 457899999999999999999999999999999998888888777754
Q ss_pred HH
Q 014820 193 AF 194 (418)
Q Consensus 193 ~~ 194 (418)
.+
T Consensus 448 pv 449 (464)
T KOG3764|consen 448 PV 449 (464)
T ss_pred HH
Confidence 33
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.1e-07 Score=86.37 Aligned_cols=178 Identities=14% Similarity=0.030 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHH
Q 014820 24 CFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGA 103 (418)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 103 (418)
.+....+.+..+....+......+.+.+.+..|.+... .+......+...++..++..+.||+|||+.++.+...+.++
T Consensus 294 ~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~ 372 (513)
T KOG0254|consen 294 KRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSIC 372 (513)
T ss_pred HHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHH
Confidence 33444444555555555556666778888888877554 55566666677788888899999999999999999999999
Q ss_pred HHHHhhhhhH--------------HHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 014820 104 GLLSSFSPNY--------------ITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAW 169 (418)
Q Consensus 104 ~~~~~~~~~~--------------~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 169 (418)
.++.+..... .....+-++..+..|..++...+.+|.+|.+.|+++.++......+...+-.....
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~ 452 (513)
T KOG0254|consen 373 LVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFP 452 (513)
T ss_pred HHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8877654211 12222334444444555666678899999999999999977776666655444444
Q ss_pred HhhcCcchHHHHHHhHHHHHHH-H-HHHhhccCch
Q 014820 170 IIMPRLDWRWLLGLSSIPSFIL-L-AFLGFQPESP 202 (418)
Q Consensus 170 ~l~~~~~w~~~~~~~~~~~~~~-~-~~~~~~~~~~ 202 (418)
.+.+..++...|...+....+. . ...+++||+.
T Consensus 453 ~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 453 FITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence 4444333344555444444443 4 4667788874
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.6e-06 Score=75.60 Aligned_cols=146 Identities=16% Similarity=0.133 Sum_probs=117.7
Q ss_pred hhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhh-hhcchHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHH
Q 014820 49 PTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD-NYGRRMGFLGEALVTAGAGLLSSF---SPNYITLITLRCLVG 124 (418)
Q Consensus 49 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G 124 (418)
|+=-+-||+|..+..-+.+....|..++....|++.. |.++|+.-.+++...+++..+..+ ..+.+.+...-++.|
T Consensus 233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G 312 (403)
T PF03209_consen 233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG 312 (403)
T ss_pred CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 4445779999999999999999999999999999888 678888888888887777665443 467889999999999
Q ss_pred hhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC----------cchHHHHHHhHHHHHHHHH
Q 014820 125 VGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR----------LDWRWLLGLSSIPSFILLA 193 (418)
Q Consensus 125 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~----------~~w~~~~~~~~~~~~~~~~ 193 (418)
++.|.+ ....+...+...+++.|..+|.+.....++..++..+++.+.|. .+|..+|.+.++..++.+.
T Consensus 313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 999999 55567888999999999999999999999999998888876541 2455666666655555433
Q ss_pred H
Q 014820 194 F 194 (418)
Q Consensus 194 ~ 194 (418)
+
T Consensus 393 l 393 (403)
T PF03209_consen 393 L 393 (403)
T ss_pred H
Confidence 3
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-06 Score=78.62 Aligned_cols=161 Identities=10% Similarity=0.008 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 014820 29 YAGLGWVAEAMEIMILSFVGPTVKSE-WNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS 107 (418)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 107 (418)
...++.++...........++.+.++ .|.+..+.+...+.+..+..+|.+++.++..|+...|.+.+..+...+.++..
T Consensus 240 ~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~ 319 (422)
T COG0738 240 LGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAV 319 (422)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555566666666666 88899999999999999999999999999999999999999988888888888
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHH
Q 014820 108 SFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI 186 (418)
Q Consensus 108 ~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~ 186 (418)
.++++...++ +-++.|+..+.. |...+...+..| +-....|..-+...+|+++.|.+.+++.|+.|-+..+.....
T Consensus 320 ~l~~g~v~~~-~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pl 396 (422)
T COG0738 320 ALIGGVVALY-ALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPL 396 (422)
T ss_pred HHhcChHHHH-HHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 8888855554 456777877777 888888888888 333344445555678888999999999999998887764444
Q ss_pred HHHHHH
Q 014820 187 PSFILL 192 (418)
Q Consensus 187 ~~~~~~ 192 (418)
++.+.+
T Consensus 397 lc~lyV 402 (422)
T COG0738 397 LCYLYV 402 (422)
T ss_pred HHHHHH
Confidence 444433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=87.20 Aligned_cols=116 Identities=15% Similarity=0.074 Sum_probs=84.6
Q ss_pred HHhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhh--hh--hHHHHHH
Q 014820 44 LSFVGPTV-KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF--SP--NYITLIT 118 (418)
Q Consensus 44 ~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~--~~--~~~~l~~ 118 (418)
.....|.+ .+.+|.+..+.+.+.+...++..++.++.|+++||+|+|+.+..+..+...+..+..+ .+ +.+...+
T Consensus 244 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (366)
T TIGR00886 244 VSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIV 323 (366)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence 33344444 4668999999999999999999999999999999999998887777666665554443 22 5555555
Q ss_pred HHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHH
Q 014820 119 LRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIG 160 (418)
Q Consensus 119 ~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 160 (418)
...+.+++.|.. ....+.+.+..| +++|.+.|+.+....+|
T Consensus 324 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 324 LFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 555555555554 455566777776 69999999988877665
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-06 Score=82.12 Aligned_cols=133 Identities=10% Similarity=-0.018 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHhhhhhcchHH-------HHHHHHHHHHHHHHHh-----hh-----hhHHHHHHHHHHHH
Q 014820 62 ESLITTSVFAGLVVGAYAWGLVADNYGRRMG-------FLGEALVTAGAGLLSS-----FS-----PNYITLITLRCLVG 124 (418)
Q Consensus 62 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~-------~~~~~~~~~~~~~~~~-----~~-----~~~~~l~~~r~l~G 124 (418)
.+++.+...+...+.+++.+++.||+|+|+. +.+|.++.+++.+..+ .+ .+.+.++..-++.|
T Consensus 311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g 390 (489)
T PRK10207 311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS 390 (489)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence 3566777778888999999999999999973 6677777776654321 11 35677788899999
Q ss_pred hhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc----------CcchHHHHHHhHHHHHHHHH
Q 014820 125 VGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP----------RLDWRWLLGLSSIPSFILLA 193 (418)
Q Consensus 125 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----------~~~w~~~~~~~~~~~~~~~~ 193 (418)
+|.+.. ++..+++.+..|++.+|.++|++....++|..++..++..... .....+.|...++..+++.+
T Consensus 391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v 470 (489)
T PRK10207 391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV 470 (489)
T ss_pred HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999 8888999999999999999999999999999999888765521 11244556656655555433
Q ss_pred H
Q 014820 194 F 194 (418)
Q Consensus 194 ~ 194 (418)
+
T Consensus 471 ~ 471 (489)
T PRK10207 471 V 471 (489)
T ss_pred H
Confidence 3
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.6e-07 Score=85.69 Aligned_cols=174 Identities=13% Similarity=0.060 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcc---------hHHHH
Q 014820 25 FVLAYAGLGWVAEAMEIMILSFVGPTVK-SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGR---------RMGFL 94 (418)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr---------r~~~~ 94 (418)
..++.+++..+........+....|.+. +-+|.+..+.|+++++..+...+..+++|.++||.-+ |..-.
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 3566677777777777777777777665 5589999999999999999999999999999998854 22223
Q ss_pred HHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhhhhhhHHHHHHHHhhc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014820 95 GEALVTAGAGLLSSFSPNYIT-LITLRCLVGVGLGSGHVFLSWFLEFV-PPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM 172 (418)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~g~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 172 (418)
++....++..+..++.++-.. ..+.-+..+++..+.....-+....- .++.-+..+|+.+....+...++|.+.+.+.
T Consensus 338 i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~ 417 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIV 417 (466)
T ss_pred HHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEe
Confidence 555666666666666653211 11111222222222211112222222 5678899999999999999999999999988
Q ss_pred cC---cchHHHHHHhHHHHHHHHHHHhhc
Q 014820 173 PR---LDWRWLLGLSSIPSFILLAFLGFQ 198 (418)
Q Consensus 173 ~~---~~w~~~~~~~~~~~~~~~~~~~~~ 198 (418)
.+ ..||.+|++.+++.++..+.+.++
T Consensus 418 ~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 418 TDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 43 489999999988888775544333
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.6e-07 Score=85.59 Aligned_cols=125 Identities=13% Similarity=-0.037 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhh-chhHH
Q 014820 283 RTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA-GRKLS 361 (418)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~-grr~~ 361 (418)
+.++..+...+...+.+|+...+.+.|+.+. .+.++.++............++.+++|+++||+ |||+.
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~----------lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~ 78 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQ----------LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMA 78 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH
Confidence 5566667777778889999999999887532 367888888888888888899999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHhhhHhHhhhhccccccc--ccc
Q 014820 362 ITIMFTLSCLFLLPLVTYQS-NILTTGLLFGARMCVMGAFTVSLIYAAEVKLMT--LFT 417 (418)
Q Consensus 362 l~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~R~ 417 (418)
+.++.++.+++.+++..... .........+..++.+...+...++.+|.+|++ .|.
T Consensus 79 iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~ 137 (493)
T PRK15462 79 VMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRD 137 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcccc
Confidence 99999998888776654321 122233333344445555577788999999986 453
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-05 Score=63.74 Aligned_cols=114 Identities=14% Similarity=0.123 Sum_probs=92.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHH
Q 014820 57 LSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLS 135 (418)
Q Consensus 57 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~ 135 (418)
.++..--.-.++.+....+++++.+.+.+++|.|+.+++|.+...+-... -+-++.+.++.+-.+.|++.+.. .....
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 33334444567777888899999999999999999999999988754433 35677889999999999999998 66667
Q ss_pred HHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 014820 136 WFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWII 171 (418)
Q Consensus 136 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 171 (418)
++.+..++++|++..+++-.....+.++|.++...+
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888888888877665544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.3e-05 Score=74.07 Aligned_cols=147 Identities=10% Similarity=0.027 Sum_probs=92.5
Q ss_pred HHHHhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHh-----hhhhHHH
Q 014820 42 MILSFVGPTVK-SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSS-----FSPNYIT 115 (418)
Q Consensus 42 ~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~-----~~~~~~~ 115 (418)
.......|.+. +.+|.+..+.++.......+..+++.+.+.+.++.++++.......+..++..+.. ..++++.
T Consensus 235 ~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~ 314 (413)
T PRK15403 235 MSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLW 314 (413)
T ss_pred HHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence 34444556554 45699999999998888888888888888877555554443322222222222221 1234444
Q ss_pred HHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHH
Q 014820 116 LITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFI 190 (418)
Q Consensus 116 l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~ 190 (418)
.++..++.|+|.+.. +...... ..-.+..+|++.++++.....+...++..++++.++ +-+..|...+++..+
T Consensus 315 ~~~~~~l~~~G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~ 388 (413)
T PRK15403 315 SVLGTSLYAFGIGLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGV 388 (413)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence 567778888888877 5554322 222233589999999988888888888888887654 445555554444333
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.4e-05 Score=73.29 Aligned_cols=139 Identities=9% Similarity=0.001 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhhcc-hHHHHHHHHHHHHHHHHHhhhhh---------------------HHHHHHHHH
Q 014820 64 LITTSVFAGLVVGAYAWGLVADNYGR-RMGFLGEALVTAGAGLLSSFSPN---------------------YITLITLRC 121 (418)
Q Consensus 64 ~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~~~~~~---------------------~~~l~~~r~ 121 (418)
+....+.+...+.+++..++.+|+|+ |++..++.++.+++.....+.++ .+..++.-.
T Consensus 309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (477)
T TIGR01301 309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA 388 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence 34445555556777788889999995 77778898888888777665432 266777788
Q ss_pred HHHhhhhhh-HHHHHHHHhhcCC--CCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc--hHHHHHHhHHHHHHHHH-HH
Q 014820 122 LVGVGLGSG-HVFLSWFLEFVPP--SNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD--WRWLLGLSSIPSFILLA-FL 195 (418)
Q Consensus 122 l~G~~~g~~-~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--w~~~~~~~~~~~~~~~~-~~ 195 (418)
+.|+..+.. .+.++++++..++ ++.|..+|+.+.+..+..++..+..+.+.+..| -...+.+.++..++..+ ..
T Consensus 389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~ 468 (477)
T TIGR01301 389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL 468 (477)
T ss_pred HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence 899999888 8888999999985 556999999999999999998877776544333 45567777777777644 45
Q ss_pred hhccCch
Q 014820 196 GFQPESP 202 (418)
Q Consensus 196 ~~~~~~~ 202 (418)
+.+|+.+
T Consensus 469 ~~~~~~~ 475 (477)
T TIGR01301 469 ILLPRPR 475 (477)
T ss_pred HhCCCCC
Confidence 5566653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.9e-05 Score=76.37 Aligned_cols=143 Identities=17% Similarity=0.082 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhh-hcCCCc---chhHHHHHHHHHHHHHHHhHHHHhhhhhcchHH-HHHHHHHH
Q 014820 26 VLAYAGLGWVAEAMEIMILSFVGPTVKS-EWNLSS---TEESLITTSVFAGLVVGAYAWGLVADNYGRRMG-FLGEALVT 100 (418)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~---~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~-~~~~~~~~ 100 (418)
.+....+..+..+...+....+.|.... -++-+. ...++....+.++..+++.+.|.+..+++|-|. ++++.+++
T Consensus 311 ~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ 390 (599)
T PF06609_consen 311 GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLM 390 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 3444445555555555555555665533 344443 357888889999999999999999999887554 45666665
Q ss_pred HHHHHHHhh--hhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 014820 101 AGAGLLSSF--SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGA 168 (418)
Q Consensus 101 ~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 168 (418)
.++.-+++. .+|....+..-++.|++.|.. ........-..|++.-|.+.++..+.-.+|+.+|..+.
T Consensus 391 ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy 461 (599)
T PF06609_consen 391 TAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIY 461 (599)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 554333333 346666677888999999887 55555555678889999999999888888887776654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.4e-06 Score=58.93 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHH
Q 014820 33 GWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVT 100 (418)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 100 (418)
.++..........+..|.+.++.|+|..+.|.+.++..+...++.+++|.++||+|+++..+....++
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 34555555566777788888899999999999999999999999999999999999999887765543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.8e-10 Score=105.52 Aligned_cols=159 Identities=18% Similarity=0.152 Sum_probs=105.0
Q ss_pred HHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHh--h---hhh----
Q 014820 42 MILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSS--F---SPN---- 112 (418)
Q Consensus 42 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--~---~~~---- 112 (418)
.......+.+.++.+.+.. -.......+...++.+.+..+.||+|||+.++.+.++.+++.+..+ . .++
T Consensus 270 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (451)
T PF00083_consen 270 NFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW 347 (451)
T ss_pred ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4445556777777777766 2222333345556777777999999999999999888888777664 1 111
Q ss_pred HHHHHHHHHHH--HhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHH
Q 014820 113 YITLITLRCLV--GVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFI 190 (418)
Q Consensus 113 ~~~l~~~r~l~--G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~ 190 (418)
-...+++-.+. +.+.+..+....+..|.+|++.|+++.++......++..+++.+...+.+..+-...+.+.+.+.++
T Consensus 348 ~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i 427 (451)
T PF00083_consen 348 SILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLI 427 (451)
T ss_pred ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHH
Confidence 11112222222 2222333556678899999999999999999888899998888887777666623344444444444
Q ss_pred -HHHHHhhccCch
Q 014820 191 -LLAFLGFQPESP 202 (418)
Q Consensus 191 -~~~~~~~~~~~~ 202 (418)
.++.++++||+.
T Consensus 428 ~~i~~~~~lpET~ 440 (451)
T PF00083_consen 428 AIIFVYFFLPETK 440 (451)
T ss_pred HHhheeEEEeeCC
Confidence 455677889984
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.2e-06 Score=79.57 Aligned_cols=159 Identities=15% Similarity=0.046 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHhHHHHhhhh----hcchHHHHHHHHHH
Q 014820 26 VLAYAGLGWVAEAMEIMILSFVGPTVKSE-WNLSSTEESLITTSVFAGLVVGAYAWGLVADN----YGRRMGFLGEALVT 100 (418)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~~~~~~~~~ 100 (418)
.++..++.+++.....+.+...+|.+.++ .|.|..+.+.+...+.++.+++.+++|+++|| ..+|........+.
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455666777777777788888888777 56899999999999999999999999999999 66777666665555
Q ss_pred HHHH-HHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCC-CchhHHHHHHHHHHHHHHHHHHHH-HHhhcCcc
Q 014820 101 AGAG-LLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPS-NRGMWMVIFSSFWTIGSVSEAIGA-WIIMPRLD 176 (418)
Q Consensus 101 ~~~~-~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~~~-~~l~~~~~ 176 (418)
.+.. +......+......+-+....+.+.. +....+.++...++ +|-...+....+.+.++.+++.+- +.....++
T Consensus 354 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~ 433 (495)
T KOG2533|consen 354 AIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYG 433 (495)
T ss_pred HHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchh
Confidence 5444 33333333333333333333333443 55566776665544 444555556666666665555443 33444578
Q ss_pred hHHHHHHh
Q 014820 177 WRWLLGLS 184 (418)
Q Consensus 177 w~~~~~~~ 184 (418)
|...|...
T Consensus 434 ~~~~f~~~ 441 (495)
T KOG2533|consen 434 WGAVFYML 441 (495)
T ss_pred hhhHHHHH
Confidence 88888443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.7e-05 Score=72.52 Aligned_cols=92 Identities=11% Similarity=0.009 Sum_probs=79.9
Q ss_pred CCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhh
Q 014820 326 PQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLI 405 (418)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (418)
..+.-.+......-.+.++.-++.+++.+|+|+-+++..++.+..+=++.+....++|..+.+-++-++..+..+.+..+
T Consensus 403 ~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~s 482 (618)
T KOG3762|consen 403 GIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIIS 482 (618)
T ss_pred CcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHH
Confidence 33333345555556777888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccc
Q 014820 406 YAAEVKLMTLFT 417 (418)
Q Consensus 406 ~~~e~~p~~~R~ 417 (418)
|++...|++.|+
T Consensus 483 Y~s~vaPp~l~a 494 (618)
T KOG3762|consen 483 YASHVAPPGLRA 494 (618)
T ss_pred HHHhhCCCcchH
Confidence 999999999885
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00026 Score=66.79 Aligned_cols=86 Identities=13% Similarity=-0.009 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHHHHh------------hchhHHHHHHHHHHHHHH
Q 014820 330 NLYIDEFITSLAEIPGLLLAAILVDTAGRK-LSITIMFTLSCLFLLPLVT------------YQSNILTTGLLFGARMCV 396 (418)
Q Consensus 330 ~~~~~~~~~~~~~~~g~~~~g~l~d~~grr-~~l~~~~~~~~~~~~~l~~------------~~~~~~~~~~~~~~~~~~ 396 (418)
.........+++..+|+.+..+..- -++| +.+.+..+.=.+..-++.+ ..+.+..++..+++|+..
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 3446667778999999986654321 1222 1222222222222222111 134556677788888888
Q ss_pred HhhhHhHhhhhccccccccc
Q 014820 397 MGAFTVSLIYAAEVKLMTLF 416 (418)
Q Consensus 397 ~~~~~~~~~~~~e~~p~~~R 416 (418)
|-..+....+..+..+++.|
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~ 406 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHER 406 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHH
Confidence 88878888888888776655
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.1e-06 Score=76.57 Aligned_cols=94 Identities=11% Similarity=-0.118 Sum_probs=87.7
Q ss_pred CCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhH
Q 014820 324 HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVS 403 (418)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (418)
++.++...++......+...++++++|++.||++|++++.+|..+-.++.+.-.+..+.|...++-.+.|++.....|+.
T Consensus 63 fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia 142 (493)
T KOG1330|consen 63 FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIA 142 (493)
T ss_pred cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccc
Confidence 35777888888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccccc
Q 014820 404 LIYAAEVKLMTLFT 417 (418)
Q Consensus 404 ~~~~~e~~p~~~R~ 417 (418)
.++++|.||.+.|+
T Consensus 143 ~s~IaD~f~~~~Rs 156 (493)
T KOG1330|consen 143 PSLIADSFPDDKRS 156 (493)
T ss_pred hhHhhhcCcchhhh
Confidence 99999999999997
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00057 Score=66.46 Aligned_cols=153 Identities=13% Similarity=0.101 Sum_probs=118.1
Q ss_pred HHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhh-cchHHHHHHHHHHHHHHHHHhhhhh----------
Q 014820 44 LSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY-GRRMGFLGEALVTAGAGLLSSFSPN---------- 112 (418)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~---------- 112 (418)
...++.++.++++.+...+.-..+.+.-......+.++.++|-| ||-+++.++.++..++.++...+..
T Consensus 57 ~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~ 136 (571)
T KOG1237|consen 57 VSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK 136 (571)
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence 34566777888888888888888888888888889999999965 9999999988888888654433211
Q ss_pred ---------------HHHHHHHHHHHHhhhhhh-HHHHHHHHhhcC---CC---CchhHHHHHHHHHHHHHHHHHHHHHH
Q 014820 113 ---------------YITLITLRCLVGVGLGSG-HVFLSWFLEFVP---PS---NRGMWMVIFSSFWTIGSVSEAIGAWI 170 (418)
Q Consensus 113 ---------------~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~---~~---~r~~~~~~~~~~~~~g~~~~~~~~~~ 170 (418)
...++.+.-+..+|.|+. +...++-+|.++ ++ .+..-+.++....++|..++..+..+
T Consensus 137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy 216 (571)
T KOG1237|consen 137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY 216 (571)
T ss_pred CCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 135566667777888888 888888899998 32 22367788899999999999999999
Q ss_pred hhcCcchHHHHHHhHHHHHHHHHHHh
Q 014820 171 IMPRLDWRWLLGLSSIPSFILLAFLG 196 (418)
Q Consensus 171 l~~~~~w~~~~~~~~~~~~~~~~~~~ 196 (418)
..++.+|...|.+..+..++.+++++
T Consensus 217 iq~~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 217 IQDNVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred hhhcccceeeccHHHHHHHHHHHHHH
Confidence 98899999999887776666544433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.6e-06 Score=63.82 Aligned_cols=80 Identities=14% Similarity=0.004 Sum_probs=68.0
Q ss_pred HHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 338 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 338 ~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
..++.+++.++.+++.||+|||+.+..+.....++.+......+.+......++.+++.+...+..+.+..|.+|++.|+
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 86 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERG 86 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhh
Confidence 45677888999999999999999999988888888777777666666777778888888888899999999999999886
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.8e-05 Score=68.38 Aligned_cols=158 Identities=15% Similarity=0.135 Sum_probs=111.1
Q ss_pred hhhhhhh-hhcCCCcchhH-HHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 014820 46 FVGPTVK-SEWNLSSTEES-LITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLV 123 (418)
Q Consensus 46 ~~~~~~~-~~~~~s~~~~~-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 123 (418)
.+.|+.. .+.|++..+.. =+.-+..-.+.+.-.+.=.+.|..-.|+++++-.+.......+..+.++.+.+=+.-+..
T Consensus 26 ~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~Fy 105 (433)
T KOG3810|consen 26 YLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFY 105 (433)
T ss_pred ccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhc
Confidence 3344443 34456655442 122333445566667777899999999999888777778888888899999888888888
Q ss_pred HhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchH--HHHHHhHHHHHHHHHHHhhccCc
Q 014820 124 GVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR--WLLGLSSIPSFILLAFLGFQPES 201 (418)
Q Consensus 124 G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~--~~~~~~~~~~~~~~~~~~~~~~~ 201 (418)
|...+.-.+-++++-+..+++++-++.+.-.+..-.|-..|..++..+.+...+. ..=.+......+..+..+++|..
T Consensus 106 G~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v 185 (433)
T KOG3810|consen 106 GPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRV 185 (433)
T ss_pred ChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCC
Confidence 8887776777789989999999999999999988888888888888877543333 22223333333345566677766
Q ss_pred hh
Q 014820 202 PR 203 (418)
Q Consensus 202 ~~ 203 (418)
++
T Consensus 186 ~r 187 (433)
T KOG3810|consen 186 KR 187 (433)
T ss_pred ch
Confidence 54
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00071 Score=60.59 Aligned_cols=145 Identities=17% Similarity=0.171 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhh-----hhcchHHHHH
Q 014820 21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD-----NYGRRMGFLG 95 (418)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d-----r~Grr~~~~~ 95 (418)
+.....+..+.+.+..++....... .+|.+.+.-|.|-++.+..+-++.= .---+++.++.| |+||||..++
T Consensus 27 ~~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 27 KGDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred hhhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceee
Confidence 3344455556667888888887777 8899988888888888765544321 223567788888 9999997543
Q ss_pred -HHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH
Q 014820 96 -EALVTAGAGLLSSF-----------SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSV 162 (418)
Q Consensus 96 -~~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 162 (418)
+..+.+..+...+. .++...+....++.-+..+.. .+...+...+..+++.|-+...-..+...|..
T Consensus 104 p~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~Gyf 183 (510)
T KOG3574|consen 104 PCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYF 183 (510)
T ss_pred ehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHH
Confidence 33333333333222 234444444555666666666 55667777788888888888887777777777
Q ss_pred HHHHHH
Q 014820 163 SEAIGA 168 (418)
Q Consensus 163 ~~~~~~ 168 (418)
++..+.
T Consensus 184 L~~~if 189 (510)
T KOG3574|consen 184 LGNVVF 189 (510)
T ss_pred hhccee
Confidence 765543
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00021 Score=69.64 Aligned_cols=170 Identities=8% Similarity=-0.148 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhc-CC-CcchhHH-HHHHHHHHHHHHHhHHHHhhhhhc--------chHHHHH
Q 014820 27 LAYAGLGWVAEAMEIMILSFVGPTVKSEW-NL-SSTEESL-ITTSVFAGLVVGAYAWGLVADNYG--------RRMGFLG 95 (418)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-s~~~~~~-~~s~~~~~~~i~~~~~g~l~dr~G--------rr~~~~~ 95 (418)
+++++..+++.......+..-..++.+.+ |. ++++... ..++..++.++|.+..|.+....- +|...+.
T Consensus 355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~ 434 (591)
T PTZ00207 355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALF 434 (591)
T ss_pred HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHH
Confidence 34444444444333333333456677777 66 3332233 788888899999998888772211 1222222
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHH-HHHHHHhhc
Q 014820 96 EALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE-AIGAWIIMP 173 (418)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~~~~~l~~ 173 (418)
...++.++.++..+.-....+++.-++.|++.|.. ++....++|.|. |+-|+-..+...+..+|..+- ..+.+.+.|
T Consensus 435 ~~~~~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd 513 (591)
T PTZ00207 435 IPSVCIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYT 513 (591)
T ss_pred HHHHHHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 22225555555555433368999999999999998 777889999999 999999999999999998775 455555543
Q ss_pred C-------------cchHHHHHHhHHHHHHHHHHHhh
Q 014820 174 R-------------LDWRWLLGLSSIPSFILLAFLGF 197 (418)
Q Consensus 174 ~-------------~~w~~~~~~~~~~~~~~~~~~~~ 197 (418)
. .=.|.+|++.+.++++..+....
T Consensus 514 ~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~ 550 (591)
T PTZ00207 514 QQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY 550 (591)
T ss_pred HHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence 1 12788898888888777554333
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00016 Score=70.62 Aligned_cols=131 Identities=19% Similarity=0.175 Sum_probs=94.0
Q ss_pred HHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCch
Q 014820 72 GLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYIT---LITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRG 147 (418)
Q Consensus 72 ~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~ 147 (418)
....+....+.+.|++|||.....+.++..++.++.++..+... ..+...+..++.+.. .....+.+|.+|+..|.
T Consensus 362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~ 441 (521)
T KOG0255|consen 362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN 441 (521)
T ss_pred HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 55555666689999999999999999999999998888764433 444445555555555 55577889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHH-HHHHhhccCchh
Q 014820 148 MWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL-LAFLGFQPESPR 203 (418)
Q Consensus 148 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~ 203 (418)
.+.+.......+|.+++|.+...... ......+.+.+....+. .+...++||+..
T Consensus 442 ~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~ 497 (521)
T KOG0255|consen 442 TAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKG 497 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCC
Confidence 99999999999999999988765543 22222222234444444 444578888754
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.016 Score=55.32 Aligned_cols=150 Identities=11% Similarity=0.015 Sum_probs=92.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC---CCcchhHHHHHHHHH-HHHHHHhHHHHhhhhhcchHHHHH
Q 014820 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWN---LSSTEESLITTSVFA-GLVVGAYAWGLVADNYGRRMGFLG 95 (418)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~~~ 95 (418)
.+..+..++.+.+..++..+....+ -.+.+.+= .......++-....+ +..+...+..+++++++|.+++-+
T Consensus 19 ~~~E~~k~~~l~~m~f~i~f~y~~l----R~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~ 94 (491)
T PF03219_consen 19 HRSELKKFLPLALMFFFILFNYTIL----RDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYI 94 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3555666666666666665554443 33333321 144455666554444 445667789999999999998876
Q ss_pred HHHHHHHHHHHHhhh---------hh----------------------HHHHHHHHHHHHhhhhhh-H-HHHHHHHhhcC
Q 014820 96 EALVTAGAGLLSSFS---------PN----------------------YITLITLRCLVGVGLGSG-H-VFLSWFLEFVP 142 (418)
Q Consensus 96 ~~~~~~~~~~~~~~~---------~~----------------------~~~l~~~r~l~G~~~g~~-~-~~~~~~~~~~~ 142 (418)
....+.....+.++. ++ .|...+.-+..-+-.... + .-..+..|.++
T Consensus 95 ~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt 174 (491)
T PF03219_consen 95 IIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITT 174 (491)
T ss_pred HHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 555554444443331 11 122222222222222222 2 23567789999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014820 143 PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP 173 (418)
Q Consensus 143 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 173 (418)
.++-.+..+++..+.++|.++++.+..++.+
T Consensus 175 ~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 175 VEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.8e-05 Score=69.25 Aligned_cols=127 Identities=11% Similarity=-0.105 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhh-hchhHH
Q 014820 283 RTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT-AGRKLS 361 (418)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~-~grr~~ 361 (418)
|.++.++..-+.--++||++.-.+..|+...- -++.+.++.++......++...-+..+++||++|| +|+|+.
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~------~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQL------GDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhc------cccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 56667777778888899998877777763221 12245788877777777776667788999999999 599999
Q ss_pred HHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccc
Q 014820 362 ITIMFTLSCLFLLPLVTYQ--SNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTL 415 (418)
Q Consensus 362 l~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 415 (418)
+..+.+++.++.++++... ......+.+.+.+++.+..=+...++.+|++|++.
T Consensus 95 I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~D 150 (498)
T COG3104 95 IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDD 150 (498)
T ss_pred HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCC
Confidence 9999999999999999863 55566677777778888888999999999998763
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00011 Score=68.67 Aligned_cols=92 Identities=9% Similarity=-0.080 Sum_probs=85.1
Q ss_pred CCCChh-HHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhH
Q 014820 325 HPQDAN-LYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVS 403 (418)
Q Consensus 325 ~~~~~~-~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (418)
+.+..+ .+........+..+..+++|+++||+|.|+++..+.+..++..+++++..+.....++-++.|++.+..+ ..
T Consensus 57 glT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~ 135 (511)
T TIGR00806 57 NFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AY 135 (511)
T ss_pred CCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 588888 8888889999999999999999999999999999999999999999998888888899999999999988 99
Q ss_pred hhhhcccccccccc
Q 014820 404 LIYAAEVKLMTLFT 417 (418)
Q Consensus 404 ~~~~~e~~p~~~R~ 417 (418)
..++...+|++.|+
T Consensus 136 ~syI~~WfP~kER~ 149 (511)
T TIGR00806 136 SSYIFSLVPPSRYQ 149 (511)
T ss_pred HHHHHHHCCHHHHH
Confidence 99999999999886
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00043 Score=65.56 Aligned_cols=123 Identities=15% Similarity=0.034 Sum_probs=109.9
Q ss_pred hhhhhcCCCcchhHHHHHHHHHHHHHHHhHHH-HhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 014820 50 TVKSEWNLSSTEESLITTSVFAGLVVGAYAWG-LVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLG 128 (418)
Q Consensus 50 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g-~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 128 (418)
+....++++..+.+...+.......+++.+.. .+...+|-|+++.+|+....+..+..+++++.|+++....+.++...
T Consensus 267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~ 346 (463)
T KOG2816|consen 267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGI 346 (463)
T ss_pred EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcc
Confidence 44567899999999999998888888888877 78888999999999999999999999999999999999998888877
Q ss_pred hhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014820 129 SGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM 172 (418)
Q Consensus 129 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 172 (418)
..+...+.++.+.+++++|++.++.....++...++|.+-+.+.
T Consensus 347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 77888899999999999999999999999999998888866553
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00012 Score=68.26 Aligned_cols=107 Identities=18% Similarity=0.125 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh---h------hHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCC---CchhHHHHHHHHH
Q 014820 91 MGFLGEALVTAGAGLLSSFS---P------NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPS---NRGMWMVIFSSFW 157 (418)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~---~------~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~---~r~~~~~~~~~~~ 157 (418)
|+++++.++..+|.++..++ . +.+.++++..+.++|.|+. +...++.+|.++++ +|.+...++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56778888888888874443 1 2367888999999999999 99999999999876 4566777889999
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHhh
Q 014820 158 TIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGF 197 (418)
Q Consensus 158 ~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~ 197 (418)
++|..++..+.+++.++++|...|.+.++..++.++.++.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988877776555444
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.019 Score=53.87 Aligned_cols=143 Identities=13% Similarity=0.051 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhh--cCCCcchhHHHHHHH---HHHHHHHHhHHHHhhhhhcchHHHHH-HHHHHHH
Q 014820 29 YAGLGWVAEAMEIMILSFVGPTVKSE--WNLSSTEESLITTSV---FAGLVVGAYAWGLVADNYGRRMGFLG-EALVTAG 102 (418)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~s~~---~~~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~~ 102 (418)
++.+.++.++..........|.+.++ -+.|.+|.+..+-+. ++=..-+.++=...+.|+||||..++ .-.+.++
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~ 83 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGI 83 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHH
Confidence 34455777776655544567888777 678888877643321 11112222233344448999997654 2233333
Q ss_pred HHHHHhhhh----------------------h--HHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHH
Q 014820 103 AGLLSSFSP----------------------N--YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFW 157 (418)
Q Consensus 103 ~~~~~~~~~----------------------~--~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~ 157 (418)
..+..+... + ...+....++.=+-.+.. .++..+.-....+++++.|..--..|.
T Consensus 84 ~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~ 163 (544)
T PF13000_consen 84 LMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQ 163 (544)
T ss_pred HHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHh
Confidence 333222111 1 112223333333334444 455567677778888988888888888
Q ss_pred HHHHHHHHHHHHHh
Q 014820 158 TIGSVSEAIGAWII 171 (418)
Q Consensus 158 ~~g~~~~~~~~~~l 171 (418)
+.|..++..+.-.+
T Consensus 164 ~~Gyfls~tvFlal 177 (544)
T PF13000_consen 164 TAGYFLSFTVFLAL 177 (544)
T ss_pred hhhHHHHHHHHHhh
Confidence 88888776665544
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00043 Score=62.08 Aligned_cols=122 Identities=19% Similarity=0.151 Sum_probs=107.8
Q ss_pred hhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhc--chHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 014820 52 KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYG--RRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGS 129 (418)
Q Consensus 52 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 129 (418)
.+.+|.++.|.|-+.+...++..+.+....+..||.. -+..+..++.++.-..++.+.++....++++-.+-.+..+.
T Consensus 289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~ 368 (451)
T KOG2615|consen 289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTAS 368 (451)
T ss_pred cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999987 77788888888888888888888888888888888888777
Q ss_pred h-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014820 130 G-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP 173 (418)
Q Consensus 130 ~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 173 (418)
. +....++....|+++||.++|+.....+++-++||++++.+..
T Consensus 369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 7 7777889999999999999999999999999999999987643
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.65 E-value=7.3e-05 Score=74.31 Aligned_cols=95 Identities=8% Similarity=-0.033 Sum_probs=79.0
Q ss_pred CCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc----------------------
Q 014820 323 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ---------------------- 380 (418)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~---------------------- 380 (418)
.++.++.+.++......++.+++.++.+++.||.+||+.+.++.++++++.++.++..
T Consensus 62 ~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~ 141 (633)
T TIGR00805 62 RFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSAN 141 (633)
T ss_pred hhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccc
Confidence 3568888888888899999999999999999999999999999999988888776531
Q ss_pred -----------------------------hhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 381 -----------------------------SNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 381 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
.....++.-++.|++.+..++...+++.|.+|++.|+
T Consensus 142 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~ 207 (633)
T TIGR00805 142 SFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSP 207 (633)
T ss_pred cccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccH
Confidence 1223445677778888888899999999999999886
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0049 Score=56.43 Aligned_cols=79 Identities=20% Similarity=0.177 Sum_probs=43.8
Q ss_pred HHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH-------hhchhHHHHHHHHHHHHHHHhhhHhHhhhhccc
Q 014820 338 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV-------TYQSNILTTGLLFGARMCVMGAFTVSLIYAAEV 410 (418)
Q Consensus 338 ~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 410 (418)
.++...+|.....+..++-.|........=...+-++.+. ...+.++.+....++++..|-..++...++.+-
T Consensus 292 fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~ 371 (406)
T KOG1479|consen 292 FNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQ 371 (406)
T ss_pred hHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhheehhcCCC
Confidence 6677777766555554443333222222222222222211 134455667777777777777777888888887
Q ss_pred cccccc
Q 014820 411 KLMTLF 416 (418)
Q Consensus 411 ~p~~~R 416 (418)
+|++.+
T Consensus 372 v~~~e~ 377 (406)
T KOG1479|consen 372 VKPSEK 377 (406)
T ss_pred CChHHH
Confidence 776643
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0017 Score=44.77 Aligned_cols=60 Identities=15% Similarity=0.036 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHH
Q 014820 298 AYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTL 368 (418)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~ 368 (418)
.......+.+.+.++. |.++.+.+....+..+..+++.++.|.++||.++++.......+
T Consensus 15 ~~g~~~Pfl~~~~~~~-----------Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 15 ALGCLYPFLPLYLKQL-----------GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHhhhhHhhhhc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3334444566665433 59999999999999999999999999999999998887665544
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.007 Score=56.77 Aligned_cols=154 Identities=14% Similarity=0.020 Sum_probs=107.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHH
Q 014820 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL 98 (418)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 98 (418)
|+.|.....+...++..+.++....++..+..+....|+++..+|..-+...+....+.+...++.+|+|..|.=+.+..
T Consensus 252 w~~Y~~q~vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~ 331 (432)
T PF06963_consen 252 WRTYFRQPVFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLW 331 (432)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 33444445666666666666665566666666777779999999999999999999999999999999999988777766
Q ss_pred HHHHHHHHHhh---h---h----hHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHH
Q 014820 99 VTAGAGLLSSF---S---P----NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIG 167 (418)
Q Consensus 99 ~~~~~~~~~~~---~---~----~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 167 (418)
.-..+..++.. . + +...++.+-.+.-+|.=.+ ....-.+.|..|+++||...|.-....++-.++...+
T Consensus 332 ~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 332 WQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 55444433322 1 1 2223333333333333233 4455578899999999999999999888888877766
Q ss_pred HHHhh
Q 014820 168 AWIIM 172 (418)
Q Consensus 168 ~~~l~ 172 (418)
+-.+.
T Consensus 412 ~ii~~ 416 (432)
T PF06963_consen 412 TIIFP 416 (432)
T ss_pred HhccC
Confidence 65443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0011 Score=57.18 Aligned_cols=118 Identities=17% Similarity=-0.025 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHH
Q 014820 287 LLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMF 366 (418)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~ 366 (418)
.............|....|.|.+-+. .+.+..+.........++..+| ++.|.+.||+|.+..+.++.
T Consensus 6 ~a~~~v~~~~Gt~Y~Fs~yS~~Lk~~-----------l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~ 73 (250)
T PF06813_consen 6 VASIWVQLCSGTTYTFSAYSPQLKSR-----------LGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGA 73 (250)
T ss_pred HHHHHHHHhcCcccchhhhhHHHHHH-----------hCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHH
Confidence 33333334455666666777766533 3588888888888888887765 88899999999999999999
Q ss_pred HHHHHHHHHHHhh-------chhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 367 TLSCLFLLPLVTY-------QSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 367 ~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
+...++...+... .+.|...+..++.+.+.............+.||. .||
T Consensus 74 ~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG 130 (250)
T PF06813_consen 74 VLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRG 130 (250)
T ss_pred HHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccC
Confidence 9999988877651 1223333333333333333334455556688985 576
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0023 Score=58.86 Aligned_cols=133 Identities=17% Similarity=0.056 Sum_probs=88.4
Q ss_pred HHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcc-hHHHHHHHHHHHHHHH-HHhhh---hhHHHHHH
Q 014820 44 LSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGR-RMGFLGEALVTAGAGL-LSSFS---PNYITLIT 118 (418)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~-~~~~~---~~~~~l~~ 118 (418)
++..+......-|.+....|++.....++..+++.+.|.+.||... |.+.++......++.+ +.... ...+.++.
T Consensus 285 l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~ 364 (480)
T KOG2563|consen 285 LSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFT 364 (480)
T ss_pred HHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhh
Confidence 3333433334456677889999999999999999999999999865 5555555555555532 22222 23455566
Q ss_pred HHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 014820 119 LRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD 176 (418)
Q Consensus 119 ~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 176 (418)
.-.+.|++.... |+...+-.|..-|..-+...|+.+...++-+.+-...-+...+..+
T Consensus 365 t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~ 423 (480)
T KOG2563|consen 365 TCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLG 423 (480)
T ss_pred hHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccC
Confidence 666777766555 8777777777666666777888777666666665666666655444
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.25 Score=46.46 Aligned_cols=151 Identities=11% Similarity=-0.001 Sum_probs=98.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCC---cchhHHHHHHHHH-HHHHHHhHHHHhhhhhcchHHHH
Q 014820 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLS---STEESLITTSVFA-GLVVGAYAWGLVADNYGRRMGFL 94 (418)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~~ 94 (418)
.++..+..+..+.+..++..+.... +-.+.+.+.++ +....++-+..-+ +..+..++.+++.+++-+.+++-
T Consensus 21 i~r~E~~kflpl~Ll~f~I~~ny~~----lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~ 96 (509)
T COG3202 21 IRRYELKKFLPLALLFFCILFNYNL----LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFY 96 (509)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHH
Confidence 4455666666666666655554443 34455665444 4455777776666 67888999999999999999887
Q ss_pred HHHHHHHHHHHHHhhh---------hh-----------------------HHHHHHHHHHHHhhhhhh-H-HHHHHHHhh
Q 014820 95 GEALVTAGAGLLSSFS---------PN-----------------------YITLITLRCLVGVGLGSG-H-VFLSWFLEF 140 (418)
Q Consensus 95 ~~~~~~~~~~~~~~~~---------~~-----------------------~~~l~~~r~l~G~~~g~~-~-~~~~~~~~~ 140 (418)
.....+....+++++. ++ .|...+.....=+-.... . .-.....|.
T Consensus 97 ~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNei 176 (509)
T COG3202 97 IILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEI 176 (509)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6665555555554432 11 022222222222222222 2 234567899
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014820 141 VPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP 173 (418)
Q Consensus 141 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 173 (418)
...++-.|..++++.+.+++..++..+..++.+
T Consensus 177 tt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 177 TTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred hhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999888876
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0075 Score=57.27 Aligned_cols=146 Identities=17% Similarity=0.144 Sum_probs=103.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhh----------hhhHHHHHHHHHHHHhh
Q 014820 57 LSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF----------SPNYITLITLRCLVGVG 126 (418)
Q Consensus 57 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l~G~~ 126 (418)
.++...+.+..+..++..++..+.....-++.-|+++..+.++.++..+.-.. .++.+..+.--++..+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 78888888888888899999999988888888899988887777666553221 12222233334555555
Q ss_pred hhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc--------hHHHHHHhHHHHHHHHHHHhh
Q 014820 127 LGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD--------WRWLLGLSSIPSFILLAFLGF 197 (418)
Q Consensus 127 ~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--------w~~~~~~~~~~~~~~~~~~~~ 197 (418)
.+.. .+...+++|..|+...|...++.....++|..++..++..+.+.++ -.+..++..+..++.+.+..+
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l 411 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL 411 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 5555 5566788999999999999999999999999999999888765433 223344445555555555666
Q ss_pred ccCch
Q 014820 198 QPESP 202 (418)
Q Consensus 198 ~~~~~ 202 (418)
+|+..
T Consensus 412 Lp~~~ 416 (433)
T PF03092_consen 412 LPPQK 416 (433)
T ss_pred cCCCc
Confidence 77643
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.026 Score=52.15 Aligned_cols=114 Identities=13% Similarity=0.059 Sum_probs=79.8
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHH--HH---HHHhhhhhHHHHHHHHHHHHhhhhh
Q 014820 55 WNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAG--AG---LLSSFSPNYITLITLRCLVGVGLGS 129 (418)
Q Consensus 55 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~--~~---~~~~~~~~~~~l~~~r~l~G~~~g~ 129 (418)
+.-..++..+....+.+|-.++.--...+ |+ |+..+...+-..- .. ...-+.++.|..++.-+..|+..|.
T Consensus 276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa 351 (402)
T PF02487_consen 276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGA 351 (402)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhH
Confidence 33345677888888888877765433222 33 4444433322221 11 2233467899999999999998888
Q ss_pred h-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014820 130 G-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM 172 (418)
Q Consensus 130 ~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 172 (418)
. .-....+.|..|+++|..++|....+-++|..++.+++-++-
T Consensus 352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7 555667788899999999999999999999999988877653
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.19 Score=48.85 Aligned_cols=138 Identities=14% Similarity=0.100 Sum_probs=77.1
Q ss_pred hhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHH--H-HHHHHHHhhhhh----H-HHHHHHHHHH
Q 014820 52 KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV--T-AGAGLLSSFSPN----Y-ITLITLRCLV 123 (418)
Q Consensus 52 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~--~-~~~~~~~~~~~~----~-~~l~~~r~l~ 123 (418)
.--+|-+..+.+.+.+++..|..+|+.+++++.++--++... +-..+ . +++..+...... . ..++...++.
T Consensus 42 ~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~-~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 120 (521)
T PRK03612 42 SYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVA-VELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLI 120 (521)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677888889999999999999999999887443333221 11111 1 111111111111 1 1122334455
Q ss_pred Hhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh-cCcchHHHHHHhHHHHHHH
Q 014820 124 GVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM-PRLDWRWLLGLSSIPSFIL 191 (418)
Q Consensus 124 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~w~~~~~~~~~~~~~~ 191 (418)
++..|+. |.......+.. .++-|...|-......+|+++|.++.+++. ...|-....++.+.+.+++
T Consensus 121 ~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~ 189 (521)
T PRK03612 121 GLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLA 189 (521)
T ss_pred HHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 6666665 44444443322 223466778888888888888888877654 3566555544545444443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.049 Score=49.15 Aligned_cols=80 Identities=13% Similarity=-0.089 Sum_probs=62.1
Q ss_pred CCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHh
Q 014820 325 HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSL 404 (418)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (418)
+.+..++...+....+.+.+...+.|.++||+|||+..+...++..++++.-.. ++.+.+++.=++.|+.....++..=
T Consensus 65 g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-~~~~~L~~GRvlgGiaTSLLfS~FE 143 (354)
T PF05631_consen 65 GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-SNYPVLLLGRVLGGIATSLLFSAFE 143 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888888888999999999999999999998888888888764433 4455666666777777666665544
Q ss_pred h
Q 014820 405 I 405 (418)
Q Consensus 405 ~ 405 (418)
+
T Consensus 144 s 144 (354)
T PF05631_consen 144 S 144 (354)
T ss_pred H
Confidence 3
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.38 Score=42.79 Aligned_cols=100 Identities=15% Similarity=0.229 Sum_probs=62.3
Q ss_pred HHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcC--CCC
Q 014820 69 VFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVP--PSN 145 (418)
Q Consensus 69 ~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~--~~~ 145 (418)
.++....++++.+.+..++|-|.+++++....... +..-+-+.+..++.+-...|++.+.. ..--+|+++... .++
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~ 145 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ 145 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence 34445566777779999999999998887766553 22233467788888899999998876 333344433322 123
Q ss_pred c-------------hhHHHHHHHHHHHHHHHHHHHHH
Q 014820 146 R-------------GMWMVIFSSFWTIGSVSEAIGAW 169 (418)
Q Consensus 146 r-------------~~~~~~~~~~~~~g~~~~~~~~~ 169 (418)
| |....+++...-.|..++.++-.
T Consensus 146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~ 182 (390)
T KOG3097|consen 146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMT 182 (390)
T ss_pred hhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33445555666666555554433
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.41 Score=45.29 Aligned_cols=104 Identities=17% Similarity=0.276 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhh---hhcchHHHHHHHHHHHHHHHHHhhh------------------hhHHHHHHHHH
Q 014820 63 SLITTSVFAGLVVGAYAWGLVAD---NYGRRMGFLGEALVTAGAGLLSSFS------------------PNYITLITLRC 121 (418)
Q Consensus 63 ~~~~s~~~~~~~i~~~~~g~l~d---r~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~ 121 (418)
+.-.-...+|..++..+.+.+.+ ++||++.+.++..+..++.++.... +++....+.-+
T Consensus 282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF 361 (461)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence 33344445566666777777775 5789999998888888777765432 24556777789
Q ss_pred HHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHH
Q 014820 122 LVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIG 167 (418)
Q Consensus 122 l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 167 (418)
+.|++-+.. ...+..+...+ +++|..+.+++..-..++..++-..
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 999999998 77777888888 6888889888877777777654433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.061 Score=42.80 Aligned_cols=88 Identities=11% Similarity=-0.036 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhc
Q 014820 329 ANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAA 408 (418)
Q Consensus 329 ~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (418)
........+.-....++.++.+.+.+++|.|+.++++.+...+-...... .+.+..+....+.|++.+..+...-.++.
T Consensus 37 ~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-~~~~~l~~~s~l~G~~~a~lW~aqg~ylt 115 (156)
T PF05978_consen 37 GLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-PNSYTLYPASALLGFGAALLWTAQGTYLT 115 (156)
T ss_pred cccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhhHHhhHhhhHHHH
Confidence 33344444555566777788999999999999999999888866665544 34567777888899999998888888888
Q ss_pred ccccccccc
Q 014820 409 EVKLMTLFT 417 (418)
Q Consensus 409 e~~p~~~R~ 417 (418)
+..+++.|+
T Consensus 116 ~~s~~~~~~ 124 (156)
T PF05978_consen 116 SYSTEETIG 124 (156)
T ss_pred HcCCHHHHh
Confidence 877766553
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.034 Score=47.62 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=36.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHh---h--cCcchHHHHHHhHHHHHHHHHHHhhc
Q 014820 144 SNRGMWMVIFSSFWTIGSVSEAIGAWII---M--PRLDWRWLLGLSSIPSFILLAFLGFQ 198 (418)
Q Consensus 144 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l---~--~~~~w~~~~~~~~~~~~~~~~~~~~~ 198 (418)
|+|+..+.+...+.++|.++.......- . -.-+|++.+.+.+++.++.++++..+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777788888887764442221 1 12369999988887777766655444
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0049 Score=58.07 Aligned_cols=175 Identities=11% Similarity=0.002 Sum_probs=107.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhcCCCcchhHHHH----HHHHHHHHHHHhHHHHhh-hhhcch
Q 014820 17 VGFGKYQCFVLAYAGLGWVAEAMEIMILSF-VGPTVKSEWNLSSTEESLIT----TSVFAGLVVGAYAWGLVA-DNYGRR 90 (418)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~----s~~~~~~~i~~~~~g~l~-dr~Grr 90 (418)
....+..|...+.+.+..+........... ..+.....++++.++.-+.. ++..+-.....+..+... -++..|
T Consensus 254 ~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r 333 (488)
T KOG2325|consen 254 VKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKR 333 (488)
T ss_pred hccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 345667777777777777766666555333 33444566788777764433 333333333333333333 233456
Q ss_pred HHHHHHHHHHHHHHHHHhh----h---------------------------hhHHHHHHH-HHHHHhhhhhh-HHHHHHH
Q 014820 91 MGFLGEALVTAGAGLLSSF----S---------------------------PNYITLITL-RCLVGVGLGSG-HVFLSWF 137 (418)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~----~---------------------------~~~~~l~~~-r~l~G~~~g~~-~~~~~~~ 137 (418)
+.+..+.+.......+... - .+.+.+++. -++.|.+.-.. ....+.-
T Consensus 334 ~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tly 413 (488)
T KOG2325|consen 334 RIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLY 413 (488)
T ss_pred eeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHH
Confidence 6666554444443332211 0 011233333 34456666555 4556788
Q ss_pred HhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHH
Q 014820 138 LEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL 191 (418)
Q Consensus 138 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~ 191 (418)
+|...|++++.+.++++.....+..++|++........|.|+...+.....++.
T Consensus 414 SkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~ 467 (488)
T KOG2325|consen 414 SKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVV 467 (488)
T ss_pred HHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888888888776665554444
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.072 Score=46.75 Aligned_cols=137 Identities=12% Similarity=-0.018 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHhhc
Q 014820 62 ESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFV 141 (418)
Q Consensus 62 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~ 141 (418)
.|.+.-+-.+-..+..+.+....||+---.=..+..++.+.+.++.+++++.++-+.+-.+..++.|..-+..--++..+
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y 143 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY 143 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC
Confidence 35555555566667777778888886433334556677788888999999999999888888888877644443344455
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc--CcchHHHHHHhHHHHHHHHHHHhhccCch
Q 014820 142 PPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP--RLDWRWLLGLSSIPSFILLAFLGFQPESP 202 (418)
Q Consensus 142 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (418)
|+.. .+-+..+.+.++.+|..-=..+.+ +.+-|.+.++...+.++....++++-++|
T Consensus 144 ~~~~----i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 144 PSIV----IAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred CCce----eccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 4433 223333333333333322222222 45677777777666666555555554444
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.064 Score=37.44 Aligned_cols=73 Identities=15% Similarity=0.026 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh
Q 014820 300 YAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY 379 (418)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~ 379 (418)
+.....+|.+.++. +.+..+.+.......++.++|.+...++.++.++++.+..+.+...+..+.+.+.
T Consensus 9 FayTplLP~M~~~~-----------~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 9 FAYTPLLPLMQADG-----------GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHhHhHHHHHhc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444667665443 5899999999999999999999999999999888899999999999998888886
Q ss_pred chhH
Q 014820 380 QSNI 383 (418)
Q Consensus 380 ~~~~ 383 (418)
.+.+
T Consensus 78 ~~~~ 81 (85)
T PF06779_consen 78 HSFW 81 (85)
T ss_pred hchH
Confidence 6554
|
Note that many members are hypothetical proteins. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.1 Score=52.05 Aligned_cols=91 Identities=11% Similarity=-0.076 Sum_probs=65.6
Q ss_pred CCCChhHHHHHHHHHhhhhHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHHhhch--------hHHHHHHHHHHHHH
Q 014820 325 HPQDANLYIDEFITSLAEIPGLLLAAILVDT-AGRKLSITIMFTLSCLFLLPLVTYQS--------NILTTGLLFGARMC 395 (418)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~-~grr~~l~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~~ 395 (418)
+.+...+...........-+..+++|+++|+ +||++.+.++.++..++..++.+... ....++.+.+...+
T Consensus 19 g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G 98 (654)
T TIGR00926 19 GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALG 98 (654)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhh
Confidence 4666666666655556666777899999997 69999999999998888887766211 12244556666677
Q ss_pred HHhhhHhHhhhhcccccccc
Q 014820 396 VMGAFTVSLIYAAEVKLMTL 415 (418)
Q Consensus 396 ~~~~~~~~~~~~~e~~p~~~ 415 (418)
.++.-|...+...|.++++.
T Consensus 99 ~GgiKp~vsaf~gdqf~~~~ 118 (654)
T TIGR00926 99 TGGIKPCVSAFGGDQFEERQ 118 (654)
T ss_pred ccccccCchhhhHhhcCccc
Confidence 77777888888888887543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.6 Score=44.34 Aligned_cols=108 Identities=14% Similarity=0.016 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhhcch-HHHHHHHH---HHHHHHHHHhh---------hhhHHHHHHHHHHHHhhhhh
Q 014820 63 SLITTSVFAGLVVGAYAWGLVADNYGRR-MGFLGEAL---VTAGAGLLSSF---------SPNYITLITLRCLVGVGLGS 129 (418)
Q Consensus 63 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr-~~~~~~~~---~~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~g~ 129 (418)
-.....+++|-.+|..+..+.. .-++| +.+.+..+ +.....+++.. -++-+..++..++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4566777888888877554431 11222 12222222 22222233322 24556777789999999998
Q ss_pred h-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 014820 130 G-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWII 171 (418)
Q Consensus 130 ~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 171 (418)
. .....+..+..++++|..+..+...+..+|..+|..++..+
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 77777888889999999999999999999988887775543
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.0094 Score=53.82 Aligned_cols=85 Identities=16% Similarity=0.079 Sum_probs=3.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHH--HHHH-----------hhchhHHHHHHHHHHHHHHHhh
Q 014820 333 IDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFL--LPLV-----------TYQSNILTTGLLFGARMCVMGA 399 (418)
Q Consensus 333 ~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~--~~l~-----------~~~~~~~~~~~~~~~~~~~~~~ 399 (418)
.....++++..+|+.+.++..-+..+++.+.+..+.-.+.. +++. ..++.+..++..+++++..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 34567889999999998875322113333333222222111 1111 1223455666777888888878
Q ss_pred hHhHhhhhcccccccccc
Q 014820 400 FTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 400 ~~~~~~~~~e~~p~~~R~ 417 (418)
.+....+..+..+++.|.
T Consensus 266 ~tl~m~~~p~~v~~~e~e 283 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERE 283 (309)
T ss_dssp -HHHH-------------
T ss_pred hhceeeeCCCcCCHHHHH
Confidence 788888888888876653
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.74 Score=40.71 Aligned_cols=84 Identities=23% Similarity=-0.010 Sum_probs=59.2
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhch--hHHHHHHHHHHHHHHHhhhHhHhhhh
Q 014820 330 NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS--NILTTGLLFGARMCVMGAFTVSLIYA 407 (418)
Q Consensus 330 ~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (418)
..........+...++.++.|.+.||.|||+.+..+......+.+...+..+ .+...+.....+++.+...+....+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 119 (338)
T COG0477 40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALL 119 (338)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4566666777777888899999999999997777776654444344444333 34444444446777777888899999
Q ss_pred cccccc
Q 014820 408 AEVKLM 413 (418)
Q Consensus 408 ~e~~p~ 413 (418)
.|.+|.
T Consensus 120 ~~~~~~ 125 (338)
T COG0477 120 SEWFPE 125 (338)
T ss_pred HHhcCc
Confidence 999986
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=91.43 E-value=12 Score=35.02 Aligned_cols=97 Identities=14% Similarity=-0.016 Sum_probs=72.5
Q ss_pred CcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHH
Q 014820 58 SSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFL--GEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFL 134 (418)
Q Consensus 58 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~ 134 (418)
+..--|.+-++..+..+++++..|++..++.+-.-+. ...++.+...++++..+|.|..+++-++.+...... +++.
T Consensus 283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~ 362 (412)
T PF01770_consen 283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIAS 362 (412)
T ss_pred CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344588999999999999999999988887754443 444555666778888999999999998888877776 6666
Q ss_pred HHHHhhcCCCCchhHHHHHH
Q 014820 135 SWFLEFVPPSNRGMWMVIFS 154 (418)
Q Consensus 135 ~~~~~~~~~~~r~~~~~~~~ 154 (418)
.-++.....+.-|...|+-.
T Consensus 363 ~qIA~~l~~e~yaLVFGiNt 382 (412)
T PF01770_consen 363 FQIAKNLSEERYALVFGINT 382 (412)
T ss_pred HHHHHhccccceeeeeeeHH
Confidence 66676666666666665543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.071 Score=52.02 Aligned_cols=149 Identities=20% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh-hhhhhcCCCcchhHHHHHHHHH-HHHHHHhHHHHhhhhhc--chHHHHHHHHHHH
Q 014820 26 VLAYAGLGWVAEAMEIMILSFVGP-TVKSEWNLSSTEESLITTSVFA-GLVVGAYAWGLVADNYG--RRMGFLGEALVTA 101 (418)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~ 101 (418)
.+....++..........+....| ++..+|++++++++++.+...+ +.++|.+++|++..|+. .|..+....+...
T Consensus 306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~ 385 (539)
T PF03137_consen 306 VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSI 385 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHH
Confidence 444445555555555555555555 5567899999999998877666 67899999999999874 4555544444443
Q ss_pred HHHHHHh---h--------h---hh----------------------------------------HHHHHHHHHHHHhhh
Q 014820 102 GAGLLSS---F--------S---PN----------------------------------------YITLITLRCLVGVGL 127 (418)
Q Consensus 102 ~~~~~~~---~--------~---~~----------------------------------------~~~l~~~r~l~G~~~ 127 (418)
++.+... + + .. +..+++..++.-+..
T Consensus 386 v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~ 465 (539)
T PF03137_consen 386 VSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFT 465 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHH
Confidence 3333200 0 0 00 112222222222222
Q ss_pred hhh-HHHHHHHHhhcCCCCchhHHHHHHHHH-HHHHHHHHHHHHHhhcC
Q 014820 128 GSG-HVFLSWFLEFVPPSNRGMWMVIFSSFW-TIGSVSEAIGAWIIMPR 174 (418)
Q Consensus 128 g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~l~~~ 174 (418)
+.. ......+-+..|+++|+.|+|+..... -+|.+-+|++.+.+.|.
T Consensus 466 ~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 466 FMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -------------------------------------------------
T ss_pred HhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 333 333345568889999999999965544 55777788888877763
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.91 E-value=2.8 Score=39.41 Aligned_cols=128 Identities=13% Similarity=0.028 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhc
Q 014820 63 SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFV 141 (418)
Q Consensus 63 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~ 141 (418)
.|-..++.+...+.+....++.||+|-|+.+..+...+.++..+.+..++.+.....+-..|+-.+.. .+....++++.
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~ 414 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA 414 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence 45566677778888999999999999888888777778888888888888888888888888544433 33222222111
Q ss_pred ---------------------CC--CCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc-hHHHHHHhHHHHHH
Q 014820 142 ---------------------PP--SNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-WRWLLGLSSIPSFI 190 (418)
Q Consensus 142 ---------------------~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~~~~~~~~~~~ 190 (418)
.+ ..+|...|+.++...+-.++..+..+.+.+..| -+.+-...+..++.
T Consensus 415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~ 487 (498)
T KOG0637|consen 415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALL 487 (498)
T ss_pred HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHH
Confidence 11 123556666777777777665555554444333 33333344444443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=85.86 E-value=35 Score=32.93 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=47.9
Q ss_pred HHhhhhhh-HHHHHHHHhhcCC-CCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHH
Q 014820 123 VGVGLGSG-HVFLSWFLEFVPP-SNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFI 190 (418)
Q Consensus 123 ~G~~~g~~-~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~ 190 (418)
.|+..... ...-..+.+.+|. ++|...+|-++...++..++..++++.+.+..||.....+.-+..++
T Consensus 276 y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 276 YGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33443444 2233466777774 57889999998888888877777778888899999887766555544
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.51 E-value=3.5 Score=38.28 Aligned_cols=108 Identities=15% Similarity=0.046 Sum_probs=72.0
Q ss_pred hHHHHHH-HHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHH-------hhhhhHHHHHHHHHHHHhhhhhh-HH
Q 014820 62 ESLITTS-VFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS-------SFSPNYITLITLRCLVGVGLGSG-HV 132 (418)
Q Consensus 62 ~~~~~s~-~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~r~l~G~~~g~~-~~ 132 (418)
.-....+ +++.-.+|.+.+.++-++=.|+......+=+..+-.+.+ .+-.+-+++.+.-.+.|+..|=. ..
T Consensus 284 ~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl 363 (406)
T KOG1479|consen 284 ALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSL 363 (406)
T ss_pred HHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhh
Confidence 3445555 888888887776666554433332222222222222221 22356678888889999999987 66
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 014820 133 FLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAW 169 (418)
Q Consensus 133 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 169 (418)
.+.+..+..|++++-.+-.+.......|...|..++.
T Consensus 364 ~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~ 400 (406)
T KOG1479|consen 364 IMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW 400 (406)
T ss_pred eehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 6778888899999988888888888888887766654
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.61 E-value=25 Score=30.28 Aligned_cols=25 Identities=16% Similarity=0.008 Sum_probs=15.5
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHH
Q 014820 348 LAAILVDTAGRKLSITIMFTLSCLF 372 (418)
Q Consensus 348 ~~g~l~d~~grr~~l~~~~~~~~~~ 372 (418)
-+-+++.|+.-|++.+++.++..+.
T Consensus 259 gGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 259 GGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred hhHHHhhhheeEEEEEecchhHHHH
Confidence 3345777888777766665554443
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.80 E-value=44 Score=30.99 Aligned_cols=164 Identities=9% Similarity=-0.034 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC-CcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHH
Q 014820 27 LAYAGLGWVAEAMEIMILSFVGPTVKSEWNL-SSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL 105 (418)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 105 (418)
.+.+.++++....+.-+..+....+..+++- |....+.-..+-.....+..++.|...|+..|+|++...+.+-=++.+
T Consensus 29 ~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~ 108 (503)
T KOG2601|consen 29 VIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVI 108 (503)
T ss_pred eehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHH
Confidence 3345566777666666666666555555543 333333333344445667788889999999999998776655433332
Q ss_pred H------Hhhh------hhHHHHHHHHHHHHhhhhhh---HHHHHHH--Hhhc----CCCCchhHH---HHHHHHHHHHH
Q 014820 106 L------SSFS------PNYITLITLRCLVGVGLGSG---HVFLSWF--LEFV----PPSNRGMWM---VIFSSFWTIGS 161 (418)
Q Consensus 106 ~------~~~~------~~~~~l~~~r~l~G~~~g~~---~~~~~~~--~~~~----~~~~r~~~~---~~~~~~~~~g~ 161 (418)
+ ..+. .+...+..+..+.-...+.. ..+...+ -||. ..+.+.... +.....-..-.
T Consensus 109 vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn 188 (503)
T KOG2601|consen 109 VAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTN 188 (503)
T ss_pred HHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhh
Confidence 2 2222 24454444444333222221 1111111 1332 334444444 55555556667
Q ss_pred HHHHHHHHHhhcCcchHHHHHHhHHHHHH
Q 014820 162 VSEAIGAWIIMPRLDWRWLLGLSSIPSFI 190 (418)
Q Consensus 162 ~~~~~~~~~l~~~~~w~~~~~~~~~~~~~ 190 (418)
.++|.+.+.+....+-|..-.+.++-.++
T Consensus 189 ~Lapv~tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 189 LLAPVITGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred chhhhhhcccceeechhhhhhhhHHHHHH
Confidence 88899999888777777644444444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 418 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 1e-08 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 25/186 (13%), Positives = 59/186 (31%), Gaps = 15/186 (8%)
Query: 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAY 78
+ + + + G+ A + + P + + S + + + +
Sbjct: 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKF 80
Query: 79 AWGLVADNYGRR----MGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH--- 131
G V+D R G + A V G + + + + L L G G G
Sbjct: 81 IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 140
Query: 132 --VFLSWFLEFVPPSNRGMWMVIFSSFWTIGS-VSEAIGAWIIMPRLDWRWLLGLSSIPS 188
+ W+ RG + +++ +G + + + DW L + + +
Sbjct: 141 GRTMVHWW----SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCA 196
Query: 189 FILLAF 194
++ F
Sbjct: 197 ILVALF 202
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 418 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.97 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.93 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.91 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.61 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.54 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.48 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.41 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.36 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.17 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.83 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=291.80 Aligned_cols=359 Identities=18% Similarity=0.214 Sum_probs=262.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC--------CcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchH
Q 014820 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNL--------SSTEESLITTSVFAGLVVGAYAWGLVADNYGRRM 91 (418)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 91 (418)
+++.+.+.++.+++.+..+++...++...|.+.++++. +..+.|++.+++.+|+.+|++++|+++||+|||+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 45667777777888899999999999999988887743 2345789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHH
Q 014820 92 GFLGEALVTAGAGLLSS------------------FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI 152 (418)
Q Consensus 92 ~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~ 152 (418)
+++++.+++.++.++++ +++|+++++++|+++|++.|.. ++...+++|+.|+++|++..++
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 99999999999999887 4789999999999999999998 8888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--------CcchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHh
Q 014820 153 FSSFWTIGSVSEAIGAWIIMP--------RLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQV 224 (418)
Q Consensus 153 ~~~~~~~g~~~~~~~~~~l~~--------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (418)
.+.+..+|..+++.++..... ..+||..+.+..++.++..+..+++||+|+++..+++.+++++..++....
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 999999999999988877653 246888888888888888888889999999999999999988887766543
Q ss_pred cCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014820 225 NKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVL 304 (418)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (418)
+..+.+.. +.++ ..+++++.......++.+ +..+......+......+....
T Consensus 247 ~~~~~~~~-----------------~~~~---------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 298 (491)
T 4gc0_A 247 TLATQAVQ-----------------EIKH---------SLDHGRKTGGRLLMFGVG--VIVIGVMLSIFQQFVGINVVLY 298 (491)
T ss_dssp HHHHHHHH-----------------HHHH---------HHHHHHHHTTHHHHSCCT--HHHHHHHHHHHHHHTCHHHHHH
T ss_pred chhHHHHH-----------------HHHH---------HHHhhhhhhhHHHHhccc--HHHHHHHHHHHHHHhhhhHHHh
Confidence 22110000 0000 000000011111112211 2222223333333333444555
Q ss_pred HHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh----hc
Q 014820 305 LISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----YQ 380 (418)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~----~~ 380 (418)
+.+.+.... +.+...........++..+++.++++++.||+|||+.++.+...++++++.+.. ..
T Consensus 299 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~ 367 (491)
T 4gc0_A 299 YAPEVFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA 367 (491)
T ss_dssp HHHHHHHHS-----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHhc-----------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc
Confidence 555554332 355556666777788899999999999999999999999998888887776654 12
Q ss_pred hhHHHHHHHHH-HHHHHHhhhHhHhhhhcccccccccc
Q 014820 381 SNILTTGLLFG-ARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 381 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
..+...+..++ ......+..++.+.+.+|++|++.|+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~ 405 (491)
T 4gc0_A 368 PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG 405 (491)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHH
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHH
Confidence 22222222222 22333445578899999999999996
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-35 Score=276.68 Aligned_cols=347 Identities=12% Similarity=0.105 Sum_probs=268.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHH
Q 014820 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV 99 (418)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 99 (418)
++.+++.+..+++..+..+.+...+++..|.+.+++ .+..+.|++.+++.+++.++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 456677788888888888999889999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----hhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014820 100 TAGAGLLSSF----SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR 174 (418)
Q Consensus 100 ~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 174 (418)
.+++.+++++ +++++.++++|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|.+++|.+++++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999988 88889999999999999999999999999999999999998888
Q ss_pred cc-hHHHHHHhHHHHHHHH-HHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccch
Q 014820 175 LD-WRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELV 252 (418)
Q Consensus 175 ~~-w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (418)
.+ ||+.|++.+++.++.. +..+++||+|+....+++. +.+ .+ .+ .+.
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~------~~-~~----~~~- 230 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE-------------------EYK------ND-YP----DDY- 230 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT-------------------TTC------CC-----------
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChh-------------------hhc------cc-cc----ccc-
Confidence 88 9999999888877654 4456678776421000000 000 00 00 000
Q ss_pred hhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHH
Q 014820 253 HLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLY 332 (418)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (418)
+ ++.+++........++++++ +.++...+..+.....++....+.|.+..+. .+.+..+.+
T Consensus 231 ---~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~ 291 (451)
T 1pw4_A 231 ---N---EKAEQELTAKQIFMQYVLPN---KLLWYIAIANVFVYLLRYGILDWSPTYLKEV----------KHFALDKSS 291 (451)
T ss_dssp --------------CCTHHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB----------SCCCHHHHH
T ss_pred ---h---hhhhcccccccchHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHHHH
Confidence 0 00000001111123555554 3445555556666677777888889887542 367888888
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhh--chhHHHHHHHHHHH-HHHHHHHhh--chhHHHHHHHHHHHHHHHhhhHhHhhhh
Q 014820 333 IDEFITSLAEIPGLLLAAILVDTA--GRKLSITIMFTLSC-LFLLPLVTY--QSNILTTGLLFGARMCVMGAFTVSLIYA 407 (418)
Q Consensus 333 ~~~~~~~~~~~~g~~~~g~l~d~~--grr~~l~~~~~~~~-~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (418)
.......++.+++.++.|++.||+ +||+.+..+..+.. ++++++.+. .+.+......++.+++.+...+..+.+.
T Consensus 292 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 371 (451)
T 1pw4_A 292 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHA 371 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 888899999999999999999999 99998887777666 555555543 2455566667777787788888889999
Q ss_pred cccccccccc
Q 014820 408 AEVKLMTLFT 417 (418)
Q Consensus 408 ~e~~p~~~R~ 417 (418)
.|.+|++.|+
T Consensus 372 ~~~~~~~~~g 381 (451)
T 1pw4_A 372 LELAPKKAAG 381 (451)
T ss_dssp HHTSCTTHHH
T ss_pred HHHhchhhhh
Confidence 9999999876
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-34 Score=269.12 Aligned_cols=325 Identities=10% Similarity=0.014 Sum_probs=259.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHH
Q 014820 21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVT 100 (418)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 100 (418)
+.+++.+..+++..+..+.+....++..|.+.+++|++..+.+++.+++.+++.+++++.|+++||+|||++++++.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 44555666677778888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---hhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh-cCc
Q 014820 101 AGAGLLS---SFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM-PRL 175 (418)
Q Consensus 101 ~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~ 175 (418)
+++.++. .++++++.++++|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|..+++.+++.+. +..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999998 88899999999999999999998 788899999999999999999999999999999999999887 554
Q ss_pred c-------------------------hHHHHHHhHHHHHHHHHHHhhc--cCchhHHHhhcChHHHHHHHHHHHHhcCCC
Q 014820 176 D-------------------------WRWLLGLSSIPSFILLAFLGFQ--PESPRYLCLKGRTAEAHRALEKIAQVNKTK 228 (418)
Q Consensus 176 ~-------------------------w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (418)
+ ||+.|++.+++.++..+..++. ||+++. +
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~------------------- 238 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----N------------------- 238 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT----C-------------------
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc----c-------------------
Confidence 4 9999988777666654444333 322110 0
Q ss_pred CCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014820 229 LPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISE 308 (418)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (418)
++++++++...+++++++++..+ ...+..+.....++....+.+.
T Consensus 239 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 283 (438)
T 3o7q_A 239 --------------------------------HSDAKQGSFSASLSRLARIRHWR---WAVLAQFCYVGAQTACWSYLIR 283 (438)
T ss_dssp --------------------------------CCCSSTTSHHHHHHHHTTCSHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------cccccccchhhhHHHHHhChHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 00001122344667777764433 3333444445555666677777
Q ss_pred h-hhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 014820 309 L-SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTG 387 (418)
Q Consensus 309 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 387 (418)
+ ..+. .+.+..+.+.......++.+++.++.|++.||++||+.+..+..+.+++.+++.+..+.+. ..
T Consensus 284 ~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 352 (438)
T 3o7q_A 284 YAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-LI 352 (438)
T ss_dssp HHHHHS----------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHH-HH
T ss_pred Hhhhcc----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHH-HH
Confidence 7 5433 2578888888888899999999999999999999999999999888888877777655544 34
Q ss_pred HHHHHHHHHHhhhHhHhhhhccccccc
Q 014820 388 LLFGARMCVMGAFTVSLIYAAEVKLMT 414 (418)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~e~~p~~ 414 (418)
..++.+++.+..++..+++..|.+|++
T Consensus 353 ~~~~~g~~~~~~~~~~~~~~~~~~~~~ 379 (438)
T 3o7q_A 353 ALTLCSAFMSIQYPTIFSLGIKNLGQD 379 (438)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 456777888888899999999999977
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=245.69 Aligned_cols=316 Identities=13% Similarity=-0.016 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 014820 28 AYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS 107 (418)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 107 (418)
..+++..+....+.....+..|.+.+++|.|.++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 34556667777888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHH
Q 014820 108 SFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI 186 (418)
Q Consensus 108 ~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~ 186 (418)
.++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..++|.+++++.+..+||..|++.++
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV 162 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999988 77888999999999999999999999999999999999999988899999998887
Q ss_pred HHHHHHH-HHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCccc
Q 014820 187 PSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTE 265 (418)
Q Consensus 187 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (418)
..++..+ ..+.+||+++.. ++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~---~~~------------------------------------------------------ 185 (375)
T 2gfp_A 163 LCAGVTFSMARWMPETRPVD---APR------------------------------------------------------ 185 (375)
T ss_dssp HHHHHHCCCCCSSCCCSTTT---CCC------------------------------------------------------
T ss_pred HHHHHHHHHHHHCcccCCCC---ccc------------------------------------------------------
Confidence 7766654 445566654210 000
Q ss_pred ccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHH
Q 014820 266 GKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG 345 (418)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 345 (418)
++.+.+++++++++ ..+...+..+.....++....+.|.+..+. .+.++.+.+.......++.+++
T Consensus 186 -~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~g~~~~~~~~~~~~~ 251 (375)
T 2gfp_A 186 -TRLLTSYKTLFGNS---GFNCYLLMLIGGLAGIAAFEACSGVLMGAV----------LGLSSMTVSILFILPIPAAFFG 251 (375)
T ss_dssp -CCTTTCSTHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCSCSSHHH----------HHHHHHHHHHHHHTHHHHHHHH
T ss_pred -ccHHHHHHHHhcCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHH
Confidence 00011233444442 333344444444555555555666554321 2456667777888888888999
Q ss_pred HHHHHHHHhhhchhHHHHHHHHH-HHHHHH--HHHh--hchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 346 LLLAAILVDTAGRKLSITIMFTL-SCLFLL--PLVT--YQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 346 ~~~~g~l~d~~grr~~l~~~~~~-~~~~~~--~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
.++.+++.||.+++. ..+... ..++.. .... ..+.+...+..++.+++.+...+....+..|.+| +.|+
T Consensus 252 ~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g 325 (375)
T 2gfp_A 252 AWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAG 325 (375)
T ss_dssp HHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccc
Confidence 999999999988732 222222 222222 1222 2244445566677788888888999999999998 6665
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-29 Score=238.13 Aligned_cols=337 Identities=12% Similarity=-0.015 Sum_probs=211.7
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHhHHHHhhhh-hcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HH
Q 014820 55 WNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HV 132 (418)
Q Consensus 55 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~ 132 (418)
+|++..+.+++.+.+.+++.++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|++.|++.+.. +.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999988 88
Q ss_pred HHHHHHhhcCCCC--chhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHhhc-cCchh----HH
Q 014820 133 FLSWFLEFVPPSN--RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQ-PESPR----YL 205 (418)
Q Consensus 133 ~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~ 205 (418)
..+++.|++|+++ |+.+.++++.+.++|..++|.+++.+.++.|||+.|++.++..++..+..++. ++..+ ..
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRP 208 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCC
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCC
Confidence 8899999999998 77788889999999999999999999998999999998877666654443322 21110 00
Q ss_pred HhhcChHHHHHHHHH--------------HHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhh
Q 014820 206 CLKGRTAEAHRALEK--------------IAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLS 271 (418)
Q Consensus 206 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (418)
..+.+.++.++..+. ....+..+ .++...... ............... ++...
T Consensus 209 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~-------~~~~~ 274 (491)
T 4aps_A 209 TDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS--LPAYINLLT-----IVAIAIPVFYFAWMI-------SSVKV 274 (491)
T ss_dssp SCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC--TTHHHHHHH-----HHHHHHHHHHHHHHC------------
T ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc--cccchhhhh-----HHHHHHHHHHHHHHh-------hcccc
Confidence 001111222221111 00001000 000000000 000000000000000 00000
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHH
Q 014820 272 LFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAI 351 (418)
Q Consensus 272 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~ 351 (418)
...+ +++. ...+......+.....+.....+.+.+..+.. +.+....+.......+..+++.++.++
T Consensus 275 ~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (491)
T 4aps_A 275 TSTE--HLRV-VSYIPLFIAAVLFWAIEEQGSVVLATFAAERV----------DSSWFPVSWFQSLNPLFIMLYTPFFAW 341 (491)
T ss_dssp ---------C-TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSC----------CCSSSCSGGGTTHHHHHHHHHHHHHHH
T ss_pred cHHH--HHHH-HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHh----------ccCccCHHHHhccchHHHHHHHHHHHH
Confidence 0000 0000 11112222222222333333334444443211 233234445556667788888999999
Q ss_pred HHhhhchhHHHH-----HHHHHHHHHHHHHHhh---------chhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 352 LVDTAGRKLSIT-----IMFTLSCLFLLPLVTY---------QSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 352 l~d~~grr~~l~-----~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
+.||++||+... .+..+.+++.+++... .+.+......++.+++.+...+..+.++.|.+|++.|+
T Consensus 342 l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g 421 (491)
T 4aps_A 342 LWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS 421 (491)
T ss_dssp HHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH
Confidence 999999886544 6666666666555542 24455666677777888877889999999999999997
Q ss_pred C
Q 014820 418 V 418 (418)
Q Consensus 418 ~ 418 (418)
.
T Consensus 422 ~ 422 (491)
T 4aps_A 422 Q 422 (491)
T ss_dssp S
T ss_pred H
Confidence 4
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=207.76 Aligned_cols=316 Identities=14% Similarity=0.057 Sum_probs=191.5
Q ss_pred HHHHhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHH---HHHhhhhhHH-HH
Q 014820 42 MILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAG---LLSSFSPNYI-TL 116 (418)
Q Consensus 42 ~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~~-~l 116 (418)
....+..|. +.+++|+|..+.|++.+.+.+++.++++++|+++||+|||++++++..+.++.. ....+++... .+
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI 103 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555 456789999999999999999999999999999999999999998887765432 1122222211 23
Q ss_pred HHHHHHHHhhhhhh-HHHHHHHHhhcCC--CCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHH
Q 014820 117 ITLRCLVGVGLGSG-HVFLSWFLEFVPP--SNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLA 193 (418)
Q Consensus 117 ~~~r~l~G~~~g~~-~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~ 193 (418)
...+++.|++.|.. +...+...++.++ ++|+...+....+..+|..++|.+++++.+ .+||..|++.++..++..+
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~ 182 (417)
T 2cfq_A 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAV 182 (417)
T ss_dssp CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHH
Confidence 34555555554443 2223333333332 456777788888888999999999998876 5899999877766544444
Q ss_pred HHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHH
Q 014820 194 FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLF 273 (418)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (418)
..++.+|+++. +.+. + +. ++ +++++....++
T Consensus 183 ~~~~~~~~~~~---~~~~---------------~----------~~---~~------------------~~~~~~~~~~~ 213 (417)
T 2cfq_A 183 LLFFAKTDAPS---SATV---------------A----------NA---VG------------------ANHSAFSLKLA 213 (417)
T ss_dssp HSCSSCCCCSC---SSCS---------------S----------SS---SS------------------SCCCCCCHHHH
T ss_pred HHHHcCccccc---cccc---------------c----------cc---cc------------------cccccccHHHH
Confidence 44444432210 0000 0 00 00 00001112245
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHH
Q 014820 274 LMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILV 353 (418)
Q Consensus 274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~ 353 (418)
+++++++..+..... .+.....++....+.|.+..+.. +..+.+....+....+..++.+++.++.++++
T Consensus 214 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~ 283 (417)
T 2cfq_A 214 LELFRQPKLWFLSLY---VIGVSCTYDVFDQQFANFFTSFF-------ATGEQGTRVFGYVTTMGELLNASIMFFAPLII 283 (417)
T ss_dssp HHHTTCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTS-------SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchhhHHHH---HHHHHHHHHHHHHHHHHHHHHHH-------hccCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556654433322222 22222233333333454442210 00011233445556666778888999999999
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 354 DTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 354 d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
||+|||+.+..+..+.++..+.+.+..+.+...+..++.+++.....+..+.+..|.+|++.|+
T Consensus 284 dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g 347 (417)
T 2cfq_A 284 NRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA 347 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 9999999998888888877766666555545544555555555555666788999999999886
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=203.41 Aligned_cols=164 Identities=15% Similarity=0.151 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHhh-hhhhhhhcC------CCcchhHHHHHHHHHHHHHHHhHHHHhhhhh-cchHHHHHHHHHHHHHHH
Q 014820 34 WVAEAMEIMILSFV-GPTVKSEWN------LSSTEESLITTSVFAGLVVGAYAWGLVADNY-GRRMGFLGEALVTAGAGL 105 (418)
Q Consensus 34 ~~~~~~~~~~~~~~-~~~~~~~~~------~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~ 105 (418)
.+......+..... .+++.+++| ++..+.+++.+.+.+++.++++++|+++||+ |||+++.++.++.+++.+
T Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (524)
T 2xut_A 21 EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA 100 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33333333333333 445677889 9999999999999999999999999999999 999999999999999999
Q ss_pred HHhhhh-hHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHH---HHHHHHHHHHHHHHHHHHhhcCcchHHH
Q 014820 106 LSSFSP-NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI---FSSFWTIGSVSEAIGAWIIMPRLDWRWL 180 (418)
Q Consensus 106 ~~~~~~-~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~l~~~~~w~~~ 180 (418)
+..+++ +++.+++.|++.|++.+.. +...+++.|++|+++|+++.+. .+.+.++|..++|.+++.+.+..+||+.
T Consensus 101 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~ 180 (524)
T 2xut_A 101 FLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVA 180 (524)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 999998 9999999999999999988 8888999999999999877766 8999999999999999999888999999
Q ss_pred HHHhHHHHHHHHHHHhh
Q 014820 181 LGLSSIPSFILLAFLGF 197 (418)
Q Consensus 181 ~~~~~~~~~~~~~~~~~ 197 (418)
|++.+++.++..+..++
T Consensus 181 f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 181 FGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888776665544433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.5e-14 Score=132.97 Aligned_cols=170 Identities=15% Similarity=0.017 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhh--cchHHHHHHHHHHH-HHH
Q 014820 29 YAGLGWVAEAMEIMILSFVGPTVKSE-WNLSSTEESLITTSVFAGLVVGAYAWGLVADNY--GRRMGFLGEALVTA-GAG 104 (418)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~-~~~ 104 (418)
...+..+.............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (451)
T 1pw4_A 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 335 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 33344444444455556666766665 899999999999999999999999999999999 99999888877766 666
Q ss_pred HHHhhh--hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHH-HHHHHHHHHHHhhcCcchHHH
Q 014820 105 LLSSFS--PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTI-GSVSEAIGAWIIMPRLDWRWL 180 (418)
Q Consensus 105 ~~~~~~--~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~w~~~ 180 (418)
++..+. .+.+.+.+..++.|++.+.. +....++.|.+|+++|+++.|+.+....+ |..++|.+.+.+.+..||+..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 415 (451)
T 1pw4_A 336 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 415 (451)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 666665 36777888888999988777 66778999999999999999999999999 999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHhhc
Q 014820 181 LGLSSIPSFILLAFLGFQ 198 (418)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~ 198 (418)
|++.+++.++..+..++.
T Consensus 416 ~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 416 FMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 998888777765554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.1e-14 Score=130.96 Aligned_cols=143 Identities=9% Similarity=-0.021 Sum_probs=119.8
Q ss_pred cchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHH
Q 014820 59 STEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWF 137 (418)
Q Consensus 59 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~ 137 (418)
....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+.. +....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888889999999999999999999999998888888878888888888888888888887666 5667799
Q ss_pred HhhcCCCCchhHHHH-HHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHH-hhccCc
Q 014820 138 LEFVPPSNRGMWMVI-FSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL-GFQPES 201 (418)
Q Consensus 138 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~ 201 (418)
.|.+|++.||++.++ ++....+|..++|.+++++.+..|++..|.+.+++.++..+.. ...+|+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 999999999999999 5888899999999999999888889999988887777765543 334544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.7e-13 Score=126.06 Aligned_cols=150 Identities=10% Similarity=0.007 Sum_probs=121.8
Q ss_pred HHHHhhhhhh-hh-hcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 014820 42 MILSFVGPTV-KS-EWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITL 119 (418)
Q Consensus 42 ~~~~~~~~~~-~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (418)
.......|.+ .+ .+|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.++..+.++.+.++..
T Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL 354 (438)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 3444445555 44 459999999999999999999999999999999999999999999999998888888877665544
Q ss_pred HHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc-hHHHHHHhHHHHHHHHHH
Q 014820 120 RCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-WRWLLGLSSIPSFILLAF 194 (418)
Q Consensus 120 r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~~~~~~~~~~~~~~~ 194 (418)
++.|++.+.. +...++..|.+|++ |+.+.++.. ...+|..++|.+.+++.+..| ++..|.+.++..++..+.
T Consensus 355 -~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 355 -TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp -HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 7888888877 77788888999866 888888877 556999999999999998888 998888765554444333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-12 Score=123.00 Aligned_cols=171 Identities=16% Similarity=0.067 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhh-
Q 014820 32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS- 110 (418)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~- 110 (418)
...+........+....+.+.+..+.+............+...++.++++++.||+|||+.++.+....+++.+..+..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~ 363 (491)
T 4gc0_A 284 LSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF 363 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHH
Confidence 3334444444555666778888888888778888888889999999999999999999999999888888777655432
Q ss_pred ---hhHHHHHH--HHHHHHhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc------CcchHH
Q 014820 111 ---PNYITLIT--LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP------RLDWRW 179 (418)
Q Consensus 111 ---~~~~~l~~--~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~~w~~ 179 (418)
.+.+..++ ..+..+++.+..++...+.+|.+|++.|++++|+......+|..+++.+.+.+.+ ..++..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~ 443 (491)
T 4gc0_A 364 YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGF 443 (491)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCH
T ss_pred hcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 11122222 2233333444446777899999999999999999999999999988887766543 235566
Q ss_pred HHHHhHHHHHHH-HHHHhhccCch
Q 014820 180 LLGLSSIPSFIL-LAFLGFQPESP 202 (418)
Q Consensus 180 ~~~~~~~~~~~~-~~~~~~~~~~~ 202 (418)
.|++.++++++. ++.++++||++
T Consensus 444 ~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 444 SYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHheecCCC
Confidence 777777777766 44567899984
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.1e-12 Score=120.36 Aligned_cols=154 Identities=15% Similarity=-0.036 Sum_probs=119.8
Q ss_pred HHHhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHH-----HHHHHHHHHHHHHhhhh-----
Q 014820 43 ILSFVGPTVK-SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFL-----GEALVTAGAGLLSSFSP----- 111 (418)
Q Consensus 43 ~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~-----~~~~~~~~~~~~~~~~~----- 111 (418)
......|.+. +.++.+..+.++..+...++..++.++.|++.||+|||+... .+.++.+++.++..+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4aps_A 301 QGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT 380 (491)
T ss_dssp GGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC
T ss_pred hccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3344444444 446777678888899999999999999999999999987654 67777777766665543
Q ss_pred ----hHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHH
Q 014820 112 ----NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI 186 (418)
Q Consensus 112 ----~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~ 186 (418)
+.+.+.+.-++.|++.+.. +....++.|.+|++.|+++.|+.+....+|..+++.+.+.+.+ .++...|.+.++
T Consensus 381 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~ 459 (491)
T 4aps_A 381 SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGL 459 (491)
T ss_dssp CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHH
Confidence 6777788889999999887 7788899999999999999999999999999999999888765 467777777777
Q ss_pred HHHHHHHHHhh
Q 014820 187 PSFILLAFLGF 197 (418)
Q Consensus 187 ~~~~~~~~~~~ 197 (418)
..++..+..++
T Consensus 460 ~~~~~~~~~~~ 470 (491)
T 4aps_A 460 GSVVLGIVLVF 470 (491)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76666544443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-11 Score=112.60 Aligned_cols=153 Identities=17% Similarity=0.065 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHH-HHHHHH-
Q 014820 29 YAGLGWVAEAMEIMILSFVGPTVKSE-WNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV-TAGAGL- 105 (418)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~-~~~~~~- 105 (418)
...+..+.............|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|++. ..+..+ ...+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~ 280 (375)
T 2gfp_A 203 CYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLM 280 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 33344444444555556666766555 8999999999999999999999999999999999832 333322 222222
Q ss_pred -HHhh--hhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHH
Q 014820 106 -LSSF--SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLL 181 (418)
Q Consensus 106 -~~~~--~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~ 181 (418)
.... .++.+.+++..++.|++.+.. +...+++.|..| ++|+++.++.+....+|..+++.+.+.+.+..+|+..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 359 (375)
T 2gfp_A 281 WIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGL 359 (375)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHH
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 1122 236777778888999999887 788889999998 89999999999999999999999988887777777776
Q ss_pred HHh
Q 014820 182 GLS 184 (418)
Q Consensus 182 ~~~ 184 (418)
.+.
T Consensus 360 ~~~ 362 (375)
T 2gfp_A 360 LMT 362 (375)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.9e-09 Score=99.95 Aligned_cols=135 Identities=10% Similarity=-0.011 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHhh----hhhcc----hHHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHH
Q 014820 61 EESLITTSVFAGLVVGAYAWGLVA----DNYGR----RMGFLGEALVTAGAGLLSSFS---------PNYITLITLRCLV 123 (418)
Q Consensus 61 ~~~~~~s~~~~~~~i~~~~~g~l~----dr~Gr----r~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~ 123 (418)
..+++.+...++..++.++.+++. ||.|+ ++.+.++.++.+++.++..+. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 466666666677777777777765 55543 356677888888887777664 3677788888999
Q ss_pred Hhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCc--ch---------HHHHHHhHHHHHHH
Q 014820 124 GVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL--DW---------RWLLGLSSIPSFIL 191 (418)
Q Consensus 124 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--~w---------~~~~~~~~~~~~~~ 191 (418)
|++.+.. +...+++.|..|+++||+++|+.+....+|..+++.+.+.+.+.. +| +..|++.+.+.++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 9999888 777789999999999999999999999999999999999887632 23 33355555555555
Q ss_pred HHHH
Q 014820 192 LAFL 195 (418)
Q Consensus 192 ~~~~ 195 (418)
.+..
T Consensus 496 ~~~~ 499 (524)
T 2xut_A 496 AIVF 499 (524)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 418 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-09 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 2e-05 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 56.6 bits (135), Expect = 2e-09
Identities = 24/227 (10%), Positives = 64/227 (28%), Gaps = 8/227 (3%)
Query: 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAY 78
+ + + + G+ A + + P + E S + + + +
Sbjct: 19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKF 77
Query: 79 AWGLVADNYGRR----MGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL-GSGHVF 133
G V+D R G + A V G + + + + L L G
Sbjct: 78 IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 137
Query: 134 LSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAI--GAWIIMPRLDWRWLLGLSSIPSFIL 191
+ + RG + +++ +G + + L + +
Sbjct: 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 197
Query: 192 LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 238
L ++P+ L + + + + +L ++ +
Sbjct: 198 LFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQY 244
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 19/186 (10%), Positives = 43/186 (23%), Gaps = 7/186 (3%)
Query: 42 MILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTA 101
F + ++S ++ +I ++ ++ +GL++D G R L
Sbjct: 25 AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84
Query: 102 GAGLLSSFSPNYITLITLRCLVGVGLGSGH-------VFLSWFLEFVPPSNRGMWMVIFS 154
L + + G
Sbjct: 85 VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRAR 144
Query: 155 SFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEA 214
F +G A I+ + S + + + ++P +
Sbjct: 145 MFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGAN 204
Query: 215 HRALEK 220
H A
Sbjct: 205 HSAFSL 210
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 418 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.93 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.64 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.45 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.7e-34 Score=268.07 Aligned_cols=348 Identities=12% Similarity=0.080 Sum_probs=254.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHH
Q 014820 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL 98 (418)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 98 (418)
.++++|.++..++++++..+.+...++...|.+. |+|+|.++.|++.+++.+++.++++++|+++||+|||+++.++.+
T Consensus 19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 97 (447)
T d1pw4a_ 19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 97 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 4567888888888889999988888898888775 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh----hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014820 99 VTAGAGLLSSFS----PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP 173 (418)
Q Consensus 99 ~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 173 (418)
+.+++.++++++ ++++.+++.|++.|++.|.. +....++.|++|+++|++++++.+.+..+|..+++.++..+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~ 177 (447)
T d1pw4a_ 98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 177 (447)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence 999999888776 47789999999999999988 7888899999999999999999999999999999998887655
Q ss_pred -CcchHHHHHHhHHHHHHHHH-HHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccc
Q 014820 174 -RLDWRWLLGLSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPEL 251 (418)
Q Consensus 174 -~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (418)
..+||+.|++.+++.++..+ .+.+.++.|+..... +.++ .+.+.
T Consensus 178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------------------------~~~~~------- 223 (447)
T d1pw4a_ 178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP-PIEE--------------------------YKNDY------- 223 (447)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC-SCTT--------------------------TCCC--------
T ss_pred hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccc-hhhh--------------------------hhhhc-------
Confidence 45899999888877776644 445555554311000 0000 00000
Q ss_pred hhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhH
Q 014820 252 VHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL 331 (418)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (418)
.++..++.+++........+..+++ +..+......+......++...+.+.+..+.. +.+..+.
T Consensus 224 ---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 287 (447)
T d1pw4a_ 224 ---PDDYNEKAEQELTAKQIFMQYVLPN---KLLWYIAIANVFVYLLRYGILDWSPTYLKEVK----------HFALDKS 287 (447)
T ss_dssp ---------------CCTHHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBS----------CCCHHHH
T ss_pred ---ccchhhccccccchhhHHHHHHHcC---chHHHHHHHhhhhhhhhhcchhhhhhhccccc----------ccccchh
Confidence 0000000111112223344555554 34445555555666667777788888875433 6778888
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHH---HHHHHHHh--hchhHHHHHHHHHHHHHHHhhhHhHhhh
Q 014820 332 YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSC---LFLLPLVT--YQSNILTTGLLFGARMCVMGAFTVSLIY 406 (418)
Q Consensus 332 ~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~---~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (418)
........+..+++.+++|++.||++|++.......... ++.+.+.. ..+.+...+..++.+++.++..+..+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 367 (447)
T d1pw4a_ 288 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLH 367 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999987654333322222 22222222 3344556666677777777888889999
Q ss_pred hcccccccccc
Q 014820 407 AAEVKLMTLFT 417 (418)
Q Consensus 407 ~~e~~p~~~R~ 417 (418)
..|.+|++.|+
T Consensus 368 ~~~~~p~~~~g 378 (447)
T d1pw4a_ 368 ALELAPKKAAG 378 (447)
T ss_dssp HHHTSCTTHHH
T ss_pred HHHHcCHHHHH
Confidence 99999999886
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=2.1e-24 Score=199.22 Aligned_cols=325 Identities=12% Similarity=-0.032 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHHHHhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhh
Q 014820 32 LGWVAEAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS 110 (418)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 110 (418)
+..+..........+..|. +.+++|+|.++.|++.+++.+++.++++++|+++||+|||++++++..+..++..+..+.
T Consensus 14 ~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~ 93 (417)
T d1pv7a_ 14 LFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF 93 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555666665 567799999999999999999999999999999999999999999999988888888777
Q ss_pred hhHHHHH----HHHHHHHhhhhhh-HHHHHHHHhhcC--CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHH
Q 014820 111 PNYITLI----TLRCLVGVGLGSG-HVFLSWFLEFVP--PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGL 183 (418)
Q Consensus 111 ~~~~~l~----~~r~l~G~~~g~~-~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~ 183 (418)
.+..... +.+.+.+.+.+.. ........+..+ .+++....+........+..+++.+++.+.+. +|+..+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 172 (417)
T d1pv7a_ 94 IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWL 172 (417)
T ss_dssp THHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccccc
Confidence 6655544 3344444444433 233322222222 23455567777888888899999998888764 55555555
Q ss_pred hHHHHHH-HHHHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCC
Q 014820 184 SSIPSFI-LLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNK 262 (418)
Q Consensus 184 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (418)
......+ ..+..+..+++++. +++.++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----------------------------------------------- 202 (417)
T d1pv7a_ 173 GSGCALILAVLLFFAKTDAPSS---ATVANAVG----------------------------------------------- 202 (417)
T ss_dssp HHHHHHHHHHHHHSSCCCSCSS---SCSSHHHH-----------------------------------------------
T ss_pred hhhHHHHHHHHHHHHhcccccc---hhhhhhhh-----------------------------------------------
Confidence 4444444 45555556655431 11110000
Q ss_pred cccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhh
Q 014820 263 TTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAE 342 (418)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (418)
+.+++..........+.+..+........................... ....+.+............++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 272 (417)
T d1pv7a_ 203 ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF----------FATGEQGTRVFGYVTTMGELLN 272 (417)
T ss_dssp SCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----------SSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccccccccchhhhhHHHHHHHHhhhcccccccccc----------ccccccchhhhccccccccccc
Confidence 000011112223333332223222222222222222222211112111 0111233345556666777888
Q ss_pred hHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 343 IPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 343 ~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
.++..+.+++.||.++|+.+..+..+.+++.+.+.+.++.+...+..++.+++.+...+...++..|.+|++.|+
T Consensus 273 ~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 347 (417)
T d1pv7a_ 273 ASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA 347 (417)
T ss_dssp HHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH
T ss_pred ccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHH
Confidence 889999999999999999999999999999999888888888888888889999999999999999999999886
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=2.3e-15 Score=137.80 Aligned_cols=152 Identities=8% Similarity=-0.040 Sum_probs=131.6
Q ss_pred hhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 014820 49 PTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLG 128 (418)
Q Consensus 49 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 128 (418)
+...++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 327 (417)
T d1pv7a_ 248 TSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVP 327 (417)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHH
Confidence 33444445566777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh-HHHHHHHHhhcCCCCchhHHHHH-HHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHH-HhhccC
Q 014820 129 SG-HVFLSWFLEFVPPSNRGMWMVIF-SSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPE 200 (418)
Q Consensus 129 ~~-~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~ 200 (418)
.. +...+++.|.+|++.|+++.++. +....+|..++|.+.+++.++.||+..|++.+++.++..++ .+.+++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 88 77888999999999999999985 56778999999999999999999999999888877776544 444443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=2e-12 Score=119.62 Aligned_cols=148 Identities=14% Similarity=0.006 Sum_probs=114.6
Q ss_pred hhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHH---HHHHHHHh--hhhhHHHHHHHHHH
Q 014820 48 GPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVT---AGAGLLSS--FSPNYITLITLRCL 122 (418)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~---~~~~~~~~--~~~~~~~l~~~r~l 122 (418)
...+.+.++.+..+.++..+...++..++.++.|++.||++||+......... .++..... ...+.+...++-++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (447)
T d1pw4a_ 273 PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIV 352 (447)
T ss_dssp HHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHH
T ss_pred hhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 34455678999999999999999999999999999999999876443333322 22222222 24577778888888
Q ss_pred HHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHH-HHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHH
Q 014820 123 VGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTI-GSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL 195 (418)
Q Consensus 123 ~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~ 195 (418)
.|++.+.. +....+..|.+|++.||++.|+.+....+ |.+++|.+.+++.++.||+..|++.+...++..++.
T Consensus 353 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 427 (447)
T d1pw4a_ 353 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 427 (447)
T ss_dssp HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 89888776 67778899999999999999998877766 567789999999999999999988777666654443
|