Citrus Sinensis ID: 014837

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
MGDRSPTSDNVYSIFGHAIGKTYKFVTKWNTDKSPTNKSENEAEAKFDAKFEAYKKGLQRNESSTAGKYNSRGSVDDNFISRSSVFEKCASRRSHTPSPKTAYISNSTSWHNQDQRSTSRKSGPLLLYEQSSDGSIRRGVRTTSSESTEGSVRRGIRTTSSEMSEGSSRRGSRTSSQVSEGSSRRGRTSTDSTEGSTRRGRTSETTMESTADPSLSRNMSRRSPIIFSQTTAARRKPPPVERKLTCTLEELCEGSVKKITINREIVSDDGKIYQEEETLRVKLKPGWKKGTKITFEGKGDRKPGYLPADIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCSLAVPLLGKEKMNLSFDEIIYPDFEKVIQGQGMPKPKEEGKRGDLRIRFLVEFPTNLSNAQRHEAYTILQDCY
ccccccccccHHHHccccccccccEEEEcccccccccHHHHHHHHHHccHHHHHHccccccccccccccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccEEEEEccccccccccccEEEEccccEEcccccEEEEEEEEEEEcccccccccEEEEccccccccccccccEEEEEccccccccEEEcccEEEEEEcccccccccEEEEEEcccccEEEEccccccccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHcc
ccccccccccHHEEEcccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccEEccccccccHHHHHccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccHccccccccEEcccccccccccccccccccccccccccccHHHHHHHHccccccccEcccccccccccccccccccccccccccccccccccccccEEccccccEEEEEcccHHHHcccccEEEEccccccccccEEEEEEEEEEEEEccccccccEEEEccccccccccccccEEEEEEEcccccEEEccccEEEEEEEEHHHHHcccEEEEEcccccEEEEEccccccccEEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHccc
mgdrsptsdnvySIFGHAIGKTYKFvtkwntdksptnkseneAEAKFDAKFEAYKKGlqrnesstagkynsrgsvddnfisRSSVFEKcasrrshtpspktayisnstswhnqdqrstsrksgplllyeqssdgsirrgvrttssestegsvrrgirttssemsegssrrgsrtssqvsegssrrgrtstdstegstrrgrtsettmestadpslsrnmsrrspiifsqttaarrkpppverklTCTLEELCEGsvkkitinreivsddgkiyqeEETLRVklkpgwkkgtkitfegkgdrkpgylpadivfsidekrhplfrrtgddleigVEIPLVqaltgcslavpllgkekmnlsfdeiiypdfekviqgqgmpkpkeegkrgdLRIRFLVEfptnlsnaqrHEAYTILQDCY
mgdrsptsdnVYSIFGHAIGKTYKFVTKWNtdksptnkseneaeAKFDAKFEAYKKglqrnesstagkynsrgsvddnfiSRSSVFEkcasrrshtpspktayisnstswhnqdqrstsrksgplllyeqssdgsirrgvrttssestegsvrrgirttssemsegssrrgsrtssqvsegssrrgrtstdstegstrrgrtsettmestadpslsrnmsrrspiifsqttaarrkpppverkltctleelcegsvkkitinreivsddgkiyqeeetlrvklkpgwkkgtkitfegkgdrkpgyLPADIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCSLAVPLLGKEKMNLSFDEIIYPDFekviqgqgmpkpkeegkrgDLRIRFLVefptnlsnaqrheaYTILQDCY
MGDRSPTSDNVYSIFGHAIGKTYKFVTKWNTDKSPTNKSeneaeakfdakfeaykkGLQRNESSTAGKYNSRGSVDDNFISRSSVFEKCASRRSHTPSPKTAYISNSTSWHNQDQRSTSRKSGPLLLYEQSSDGSIRRGVRTTSSESTEGSVRRGIrttssemsegssrrgsrtssQVsegssrrgrtstdstegstrrgrtsettmestADPSLSRNMSRRSPIIFSQTTAARRKPPPVERKLTCTLEELCEGSVKKITINREIVSDDGKIYQEEETLRVKLKPGWKKGTKITFEGKGDRKPGYLPADIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCSLAVPLLGKEKMNLSFDEIIYPDFEKVIQGQGMPKPKEEGKRGDLRIRFLVEFPTNLSNAQRHEAYTILQDCY
**********VYSIFGHAIGKTYKFVTKWN********************************************************************************************************************************************************************************************************************KLTCTLEELCEGSVKKITINREIVSDDGKIYQEEETLRVKLKPGWKKGTKITFEGKGDRKPGYLPADIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCSLAVPLLGKEKMNLSFDEIIYPDFEKVIQ***************LRIRFLVEFPTNLSNAQRHEAYTIL****
******T***VYSIFGHAIGKTYKFVT*********************************************************V*******************************************EQSSD************************************************************************************************************RKLTCTLEELCEGSVKKITINREIV*****IYQEEETLRVKLKPGWKKGTKITFEGKGDRKPGYLPADIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCSLAVPLLGKEKMNLSFDEIIYPDFEKVIQGQGMPKPKEEGKRGDLRIRFLVEFPTNLSNAQRHEAYTILQDC*
********DNVYSIFGHAIGKTYKFVTKWNTD***********EAKFDAKFEAYKKGLQRNESSTAGKYNSRGSVDDNFISRSSVFE**************AYISNS**************SGPLLLYEQS**************************************************************************************NMSRRSPIIFSQT**********ERKLTCTLEELCEGSVKKITINREIVSDDGKIYQEEETLRVKLKPGWKKGTKITFEGKGDRKPGYLPADIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCSLAVPLLGKEKMNLSFDEIIYPDFEKVIQG***********RGDLRIRFLVEFPTNLSNAQRHEAYTILQDCY
*******SDNVYSIFGHAIGKTYKFVTKWNTDK**TNKSENEAEAKFDAKFEAYKKGLQ*****T*GK**SRGSVDDNFISRSSVFEKCASRRSHTPSPKTAYISNSTSWHNQDQRSTSRKSGPLLLYEQSSDGSIRRGVRTTSSESTEGSVRR**************RRGSRTSSQVSEGSSRRGRTSTDSTEGSTRRGRTSETTM*******LSRNMSRRSPIIFSQTTAARRKPPPVERKLTCTLEELCEGSVKKITINREIVSDDGKIYQEEETLRVKLKPGWKKGTKITFEGKGDRKPGYLPADIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCSLAVPLLGKEKMNLSFDEIIYPDFEKVIQGQGMPKPKEEGKRGDLRIRFLVEFPTNLSNAQRHEAYTILQDCY
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MGDRSPTSDNVYSIFGHAIGKTYKFVTKWNTDKSPTNKSENEAEAKFDAKFEAYKKGLQRNESSTAGKYNSRGSVDDNFISRSSVFEKCASRRSHTPSPKTAYISNSTSWHNQDQRSTSRKSGPLLLYEQSSDGSIRRGVRTTSSESTEGSVRRGIRTTSSEMSEGSSRRGSRTSSQVSEGSSRRGRTSTDSTEGSTRRGRTSETTMESTADPSLSRNMSRRSPIIFSQTTAARRKPPPVERKLTCTLEELCEGSVKKITINREIVSDDGKIYQEEETLRVKLKPGWKKGTKITFEGKGDRKPGYLPADIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCSLAVPLLGKEKMNLSFDEIIYPDFEKVIQGQGMPKPKEEGKRGDLRIRFLVEFPTNLSNAQRHEAYTILQDCY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query417 2.2.26 [Sep-21-2011]
P59910316 DnaJ homolog subfamily B yes no 0.424 0.560 0.412 4e-35
Q80Y75316 DnaJ homolog subfamily B yes no 0.417 0.550 0.396 7e-35
Q24133334 DnaJ protein homolog 1 OS no no 0.429 0.535 0.425 1e-33
Q5R8J8337 DnaJ homolog subfamily B yes no 0.412 0.510 0.410 3e-32
Q9UDY4337 DnaJ homolog subfamily B no no 0.412 0.510 0.410 3e-32
Q9D832337 DnaJ homolog subfamily B no no 0.405 0.501 0.411 4e-32
Q2KIT4337 DnaJ homolog subfamily B no no 0.405 0.501 0.405 1e-31
P25685340 DnaJ homolog subfamily B no no 0.429 0.526 0.394 1e-30
Q9QYJ3340 DnaJ homolog subfamily B no no 0.455 0.558 0.388 2e-30
Q09912379 Protein psi1 OS=Schizosac yes no 0.407 0.448 0.411 5e-30
>sp|P59910|DJB13_HUMAN DnaJ homolog subfamily B member 13 OS=Homo sapiens GN=DNAJB13 PE=2 SV=1 Back     alignment and function desciption
 Score =  149 bits (376), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 75/182 (41%), Positives = 118/182 (64%), Gaps = 5/182 (2%)

Query: 229 QTTAARRKPPPVERKLTCTLEELCEGSVKKITINREIVSDDGKIYQ---EEETLRVKLKP 285
           Q    +++ P VER L  +LE+L  G  KKI I+R ++++DG  Y    +++ L + +KP
Sbjct: 129 QGRGVKKQDPQVERDLYLSLEDLFFGCTKKIKISRRVLNEDG--YSSTIKDKILTIDVKP 186

Query: 286 GWKKGTKITFEGKGDRKPGYLPADIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCS 345
           GW++GT+ITFE +GD+ P  +PADI+F + EK HP FRR  D+L     IPL +ALT C+
Sbjct: 187 GWRQGTRITFEKEGDQGPNIIPADIIFIVKEKLHPRFRRENDNLFFVNPIPLGKALTCCT 246

Query: 346 LAVPLLGKEKMNLSFDEIIYPDFEKVIQGQGMPKPKEEGKRGDLRIRFLVEFPTNLSNAQ 405
           + V  L    +N+  ++II+P + K + G+GMP P++  K+GDL I F ++FPT L+  +
Sbjct: 247 VEVRTLDDRLLNIPINDIIHPKYFKKVPGEGMPLPEDPTKKGDLFIFFDIQFPTRLTPQK 306

Query: 406 RH 407
           + 
Sbjct: 307 KQ 308
May be involved in inhibiting testis spermatogenesis apoptosis.
Homo sapiens (taxid: 9606)
>sp|Q80Y75|DJB13_MOUSE DnaJ homolog subfamily B member 13 OS=Mus musculus GN=Dnajb13 PE=2 SV=1 Back     alignment and function description
>sp|Q24133|DNAJ1_DROME DnaJ protein homolog 1 OS=Drosophila melanogaster GN=DnaJ-1 PE=1 SV=3 Back     alignment and function description
>sp|Q5R8J8|DNJB4_PONAB DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2 SV=1 Back     alignment and function description
>sp|Q9UDY4|DNJB4_HUMAN DnaJ homolog subfamily B member 4 OS=Homo sapiens GN=DNAJB4 PE=1 SV=1 Back     alignment and function description
>sp|Q9D832|DNJB4_MOUSE DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2 SV=1 Back     alignment and function description
>sp|Q2KIT4|DNJB4_BOVIN DnaJ homolog subfamily B member 4 OS=Bos taurus GN=DNAJB4 PE=2 SV=1 Back     alignment and function description
>sp|P25685|DNJB1_HUMAN DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4 Back     alignment and function description
>sp|Q9QYJ3|DNJB1_MOUSE DnaJ homolog subfamily B member 1 OS=Mus musculus GN=Dnajb1 PE=2 SV=3 Back     alignment and function description
>sp|Q09912|PSI1_SCHPO Protein psi1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psi1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query417
449444945333 PREDICTED: dnaJ homolog subfamily B memb 0.482 0.603 0.714 8e-82
298204500316 unnamed protein product [Vitis vinifera] 0.577 0.762 0.573 3e-77
356557491381 PREDICTED: uncharacterized protein LOC10 0.604 0.661 0.561 5e-76
255577322257 heat shock protein binding protein, puta 0.458 0.743 0.726 2e-75
297849468438 predicted protein [Arabidopsis lyrata su 0.498 0.474 0.633 6e-74
357445485382 DnaJ homolog subfamily B member [Medicag 0.894 0.976 0.429 2e-73
15220265438 HSP40/DnaJ peptide-binding protein [Arab 0.484 0.461 0.634 2e-73
359486056259 PREDICTED: dnaJ homolog subfamily B memb 0.460 0.741 0.652 3e-72
356528801257 PREDICTED: dnaJ homolog subfamily B memb 0.474 0.770 0.668 3e-71
356507648302 PREDICTED: dnaJ homolog subfamily B memb 0.477 0.658 0.608 6e-67
>gi|449444945|ref|XP_004140234.1| PREDICTED: dnaJ homolog subfamily B member 4-like [Cucumis sativus] gi|449511912|ref|XP_004164087.1| PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily B member 4-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  310 bits (794), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 148/207 (71%), Positives = 172/207 (83%), Gaps = 6/207 (2%)

Query: 214 SLSRNMSRRSP----IIFSQTTAARRKPPPVERKLTCTLEELCEGSVKKITINREIVSDD 269
           SLSRN SRRSP    II+SQ+TA + KPPPVE+KL CTLEELCEG +KKI I R+ + + 
Sbjct: 127 SLSRNTSRRSPKSTPIIYSQSTALK-KPPPVEKKLECTLEELCEGCIKKIMITRDAIVN- 184

Query: 270 GKIYQEEETLRVKLKPGWKKGTKITFEGKGDRKPGYLPADIVFSIDEKRHPLFRRTGDDL 329
           G I QEEE LR+++KPGWKKGTKITFEGKGD KPG+LPADI FSIDE+RHPLF R GDDL
Sbjct: 185 GIIVQEEELLRIEVKPGWKKGTKITFEGKGDEKPGFLPADITFSIDERRHPLFSRDGDDL 244

Query: 330 EIGVEIPLVQALTGCSLAVPLLGKEKMNLSFDEIIYPDFEKVIQGQGMPKPKEEGKRGDL 389
           ++GVEIPLV ALTGCS+ VPLLG EKM+LSFD IIYP F+K I+GQGMP PK++G RGDL
Sbjct: 245 DLGVEIPLVNALTGCSITVPLLGGEKMSLSFDNIIYPGFQKAIKGQGMPNPKQQGIRGDL 304

Query: 390 RIRFLVEFPTNLSNAQRHEAYTILQDC 416
           RI+FLV FP+ L+  QR EA TILQDC
Sbjct: 305 RIQFLVNFPSQLTQQQRSEAATILQDC 331

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|298204500|emb|CBI23775.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356557491|ref|XP_003547049.1| PREDICTED: uncharacterized protein LOC100799984 [Glycine max] Back     alignment and taxonomy information
>gi|255577322|ref|XP_002529542.1| heat shock protein binding protein, putative [Ricinus communis] gi|223530990|gb|EEF32845.1| heat shock protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297849468|ref|XP_002892615.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297338457|gb|EFH68874.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357445485|ref|XP_003593020.1| DnaJ homolog subfamily B member [Medicago truncatula] gi|355482068|gb|AES63271.1| DnaJ homolog subfamily B member [Medicago truncatula] Back     alignment and taxonomy information
>gi|15220265|ref|NP_172571.1| HSP40/DnaJ peptide-binding protein [Arabidopsis thaliana] gi|1931643|gb|AAB65478.1| DnaJ isolog; 47062-48761 [Arabidopsis thaliana] gi|67633364|gb|AAY78607.1| DNAJ chaperone C-terminal domain-containing protein [Arabidopsis thaliana] gi|332190555|gb|AEE28676.1| HSP40/DnaJ peptide-binding protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359486056|ref|XP_002269109.2| PREDICTED: dnaJ homolog subfamily B member 13-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356528801|ref|XP_003532986.1| PREDICTED: dnaJ homolog subfamily B member 13-like [Glycine max] Back     alignment and taxonomy information
>gi|356507648|ref|XP_003522576.1| PREDICTED: dnaJ homolog subfamily B member 13-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query417
TAIR|locus:2197429438 AT1G11040 [Arabidopsis thalian 0.484 0.461 0.634 3.2e-77
TAIR|locus:2205856357 AT1G44160 [Arabidopsis thalian 0.462 0.540 0.518 2.4e-53
TAIR|locus:2054809337 AT2G20560 [Arabidopsis thalian 0.412 0.510 0.476 2.9e-46
TAIR|locus:2097638323 AT3G08910 [Arabidopsis thalian 0.462 0.597 0.433 1.2e-45
TAIR|locus:2121368348 AT4G28480 [Arabidopsis thalian 0.419 0.502 0.468 5.3e-45
TAIR|locus:2179127335 AT5G01390 [Arabidopsis thalian 0.448 0.558 0.422 3.7e-44
TAIR|locus:2012743349 AT1G10350 [Arabidopsis thalian 0.462 0.553 0.430 4.1e-43
TAIR|locus:2179429347 AT5G25530 [Arabidopsis thalian 0.448 0.538 0.449 8.5e-43
TAIR|locus:2825170331 AT1G59725 [Arabidopsis thalian 0.446 0.561 0.430 5.2e-41
TAIR|locus:2054799284 AT2G20550 [Arabidopsis thalian 0.412 0.605 0.453 3.3e-40
TAIR|locus:2197429 AT1G11040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 692 (248.7 bits), Expect = 3.2e-77, Sum P(2) = 3.2e-77
 Identities = 130/205 (63%), Positives = 162/205 (79%)

Query:   214 SLSRNMSRRS--PIIFSQTTAARRKPPPVERKLTCTLEELCEGSVKKITINREIVSDDGK 271
             S+++++SRRS  PI+FSQ+T  + KPP VE+KL CTLEELC G VK I I R+I++D+G 
Sbjct:   232 SIAKSISRRSTTPIVFSQSTPPK-KPPAVEKKLECTLEELCHGGVKNIKIKRDIITDEGL 290

Query:   272 IYQEEETLRVKLKPGWKKGTKITFEGKGDRKPGYLPADIVFSIDEKRHPLFRRTGDDLEI 331
             I Q+EE LRV ++PGWKKGTKITFEG G+ KPGYLP DI F ++EKRHPLF+R GDDLEI
Sbjct:   291 IMQQEEMLRVNIQPGWKKGTKITFEGVGNEKPGYLPEDITFVVEEKRHPLFKRRGDDLEI 350

Query:   332 GVEIPLVQALTGCSLAVPLLGKEKMNLSFDEIIYPDFEKVIQGQGMPKPKEEGKRGDLRI 391
              VEIPL++ALTGC L+VPLL  E M+++  ++I+  FEK I+GQGMP  KEEGKRGDLRI
Sbjct:   351 AVEIPLLKALTGCKLSVPLLSGESMSITVGDVIFHGFEKAIKGQGMPNAKEEGKRGDLRI 410

Query:   392 RFLVEFPTNLSNAQRHEAYTILQDC 416
              FLV FP  LS  QR  AY +L+DC
Sbjct:   411 TFLVNFPEKLSEEQRSMAYEVLKDC 435
GO:0005634 "nucleus" evidence=ISM
GO:0006457 "protein folding" evidence=IEA;ISS
GO:0031072 "heat shock protein binding" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
TAIR|locus:2205856 AT1G44160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2054809 AT2G20560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097638 AT3G08910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121368 AT4G28480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179127 AT5G01390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012743 AT1G10350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179429 AT5G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825170 AT1G59725 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2054799 AT2G20550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
cd10747158 cd10747, DnaJ_C, C-terminal substrate binding doma 4e-44
PTZ00037421 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov 1e-22
COG0484371 COG0484, DnaJ, DnaJ-class molecular chaperone with 8e-21
pfam0155681 pfam01556, DnaJ_C, DnaJ C terminal domain 2e-18
TIGR02349354 TIGR02349, DnaJ_bact, chaperone protein DnaJ 1e-16
PRK14291382 PRK14291, PRK14291, chaperone protein DnaJ; Provis 3e-16
PRK14284391 PRK14284, PRK14284, chaperone protein DnaJ; Provis 3e-14
PRK14278378 PRK14278, PRK14278, chaperone protein DnaJ; Provis 2e-13
PRK14298377 PRK14298, PRK14298, chaperone protein DnaJ; Provis 3e-12
PRK10767371 PRK10767, PRK10767, chaperone protein DnaJ; Provis 9e-11
PRK14282369 PRK14282, PRK14282, chaperone protein DnaJ; Provis 1e-09
PRK14286372 PRK14286, PRK14286, chaperone protein DnaJ; Provis 2e-09
PRK14277386 PRK14277, PRK14277, chaperone protein DnaJ; Provis 7e-09
PRK14292371 PRK14292, PRK14292, chaperone protein DnaJ; Provis 9e-09
PRK14283378 PRK14283, PRK14283, chaperone protein DnaJ; Provis 1e-08
PRK14294366 PRK14294, PRK14294, chaperone protein DnaJ; Provis 8e-08
PRK14301373 PRK14301, PRK14301, chaperone protein DnaJ; Provis 2e-07
PRK14293374 PRK14293, PRK14293, chaperone protein DnaJ; Provis 3e-07
PRK14299291 PRK14299, PRK14299, chaperone protein DnaJ; Provis 3e-07
PRK14281397 PRK14281, PRK14281, chaperone protein DnaJ; Provis 4e-07
PRK14295389 PRK14295, PRK14295, chaperone protein DnaJ; Provis 4e-07
PRK14285365 PRK14285, PRK14285, chaperone protein DnaJ; Provis 5e-07
PRK14300372 PRK14300, PRK14300, chaperone protein DnaJ; Provis 7e-07
PRK14290365 PRK14290, PRK14290, chaperone protein DnaJ; Provis 1e-06
PRK10266306 PRK10266, PRK10266, curved DNA-binding protein Cbp 1e-06
PRK14289386 PRK14289, PRK14289, chaperone protein DnaJ; Provis 2e-06
PRK14287371 PRK14287, PRK14287, chaperone protein DnaJ; Provis 4e-06
PRK14279392 PRK14279, PRK14279, chaperone protein DnaJ; Provis 1e-05
PRK14297380 PRK14297, PRK14297, chaperone protein DnaJ; Provis 6e-05
PRK14296372 PRK14296, PRK14296, chaperone protein DnaJ; Provis 5e-04
PRK14280376 PRK14280, PRK14280, chaperone protein DnaJ; Provis 0.002
>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40 Back     alignment and domain information 
 Score =  150 bits (382), Expect = 4e-44
 Identities = 61/165 (36%), Positives = 84/165 (50%), Gaps = 8/165 (4%)

Query: 238 PPVERKLTCTLEELCEGSVKKITINREIVSDDGKIYQEEETLRVKLKPGWKKGTKITFEG 297
             +   L  TLEE   G  K+I I R++        +E++TL VK+  G   G ++   G
Sbjct: 1   ADLRYDLELTLEEAYFGKEKEIKIPRKVT-----RVREKKTLTVKIPAGVDDGQRLRLRG 55

Query: 298 KGDRKP-GYLPADIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCSLAVPLLGKEKM 356
           +GD  P G  P D+   I  K HP+FRR G+DL   V I L +AL G  + VP LG  K+
Sbjct: 56  EGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLYCEVPISLTEALLGGEIEVPTLGG-KV 114

Query: 357 NLSFDEIIYPDFEKVIQGQGMPKPKEEGKRGDLRIRFLVEFPTNL 401
            L       P     ++G+GMP+ +  G RGDL +   VEFP  L
Sbjct: 115 KLKIPPGTQPGTVLRLKGKGMPRLR-GGGRGDLYVEVKVEFPKKL 158

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain Back     alignment and domain information
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ Back     alignment and domain information
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 417
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 100.0
PRK14288369 chaperone protein DnaJ; Provisional 100.0
PRK14296372 chaperone protein DnaJ; Provisional 100.0
PRK14286372 chaperone protein DnaJ; Provisional 100.0
PTZ00037421 DnaJ_C chaperone protein; Provisional 100.0
PRK14279392 chaperone protein DnaJ; Provisional 100.0
PRK14295389 chaperone protein DnaJ; Provisional 100.0
PRK14281397 chaperone protein DnaJ; Provisional 100.0
PRK14277386 chaperone protein DnaJ; Provisional 100.0
PRK14278378 chaperone protein DnaJ; Provisional 100.0
PRK14298377 chaperone protein DnaJ; Provisional 100.0
PRK14297380 chaperone protein DnaJ; Provisional 100.0
PRK14285365 chaperone protein DnaJ; Provisional 100.0
PRK14287371 chaperone protein DnaJ; Provisional 100.0
PRK14284391 chaperone protein DnaJ; Provisional 100.0
PRK14282369 chaperone protein DnaJ; Provisional 100.0
PRK14280376 chaperone protein DnaJ; Provisional 100.0
PRK14276380 chaperone protein DnaJ; Provisional 100.0
PRK14301373 chaperone protein DnaJ; Provisional 100.0
PRK14294366 chaperone protein DnaJ; Provisional 100.0
PRK14299291 chaperone protein DnaJ; Provisional 100.0
PRK10767371 chaperone protein DnaJ; Provisional 100.0
PRK14283378 chaperone protein DnaJ; Provisional 100.0
PRK14291382 chaperone protein DnaJ; Provisional 100.0
PRK14290365 chaperone protein DnaJ; Provisional 100.0
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 100.0
PRK14300372 chaperone protein DnaJ; Provisional 100.0
PRK10266306 curved DNA-binding protein CbpA; Provisional 100.0
PRK14289386 chaperone protein DnaJ; Provisional 100.0
PRK14293374 chaperone protein DnaJ; Provisional 100.0
PRK14292371 chaperone protein DnaJ; Provisional 100.0
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 100.0
TIGR03835871 termin_org_DnaJ terminal organelle assembly protei 99.97
KOG0713336 consensus Molecular chaperone (DnaJ superfamily) [ 99.92
KOG0714306 consensus Molecular chaperone (DnaJ superfamily) [ 99.89
PF0155681 CTDII: DnaJ C terminal domain; InterPro: IPR002939 99.82
KOG0715288 consensus Molecular chaperone (DnaJ superfamily) [ 99.71
COG2214237 CbpA DnaJ-class molecular chaperone [Posttranslati 99.41
PRK14284391 chaperone protein DnaJ; Provisional 99.38
TIGR03835871 termin_org_DnaJ terminal organelle assembly protei 99.38
PRK14282369 chaperone protein DnaJ; Provisional 99.37
PRK14299291 chaperone protein DnaJ; Provisional 99.33
PRK14288369 chaperone protein DnaJ; Provisional 99.33
PRK14291382 chaperone protein DnaJ; Provisional 99.33
PRK14279392 chaperone protein DnaJ; Provisional 99.32
PRK14290365 chaperone protein DnaJ; Provisional 99.31
PRK14295389 chaperone protein DnaJ; Provisional 99.3
PRK14294366 chaperone protein DnaJ; Provisional 99.29
PRK14285365 chaperone protein DnaJ; Provisional 99.27
PRK10266306 curved DNA-binding protein CbpA; Provisional 99.25
PRK14298377 chaperone protein DnaJ; Provisional 99.25
PRK14286372 chaperone protein DnaJ; Provisional 99.25
KOG0691296 consensus Molecular chaperone (DnaJ superfamily) [ 99.24
PRK10767371 chaperone protein DnaJ; Provisional 99.23
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 99.23
PRK14276380 chaperone protein DnaJ; Provisional 99.22
PRK14287371 chaperone protein DnaJ; Provisional 99.17
PRK14301373 chaperone protein DnaJ; Provisional 99.17
PRK14281397 chaperone protein DnaJ; Provisional 99.15
PRK14300372 chaperone protein DnaJ; Provisional 99.14
PTZ00037421 DnaJ_C chaperone protein; Provisional 99.13
PRK14293374 chaperone protein DnaJ; Provisional 99.11
PRK14278378 chaperone protein DnaJ; Provisional 99.1
PRK14280376 chaperone protein DnaJ; Provisional 99.09
PRK14297380 chaperone protein DnaJ; Provisional 99.09
PTZ00341 1136 Ring-infected erythrocyte surface antigen; Provisi 99.08
PRK14292371 chaperone protein DnaJ; Provisional 99.07
PRK14296372 chaperone protein DnaJ; Provisional 99.04
PRK14277386 chaperone protein DnaJ; Provisional 99.04
PRK14283378 chaperone protein DnaJ; Provisional 99.02
PRK14289386 chaperone protein DnaJ; Provisional 98.99
KOG0716279 consensus Molecular chaperone (DnaJ superfamily) [ 98.96
PF0155681 CTDII: DnaJ C terminal domain; InterPro: IPR002939 98.96
KOG0717 508 consensus Molecular chaperone (DnaJ superfamily) [ 98.94
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 98.93
PF0022664 DnaJ: DnaJ domain; InterPro: IPR001623 The prokary 98.92
KOG0719264 consensus Molecular chaperone (DnaJ superfamily) [ 98.91
cd0625755 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho 98.89
smart0027160 DnaJ DnaJ molecular chaperone homology domain. 98.83
KOG0718 546 consensus Molecular chaperone (DnaJ superfamily) [ 98.73
PRK01356166 hscB co-chaperone HscB; Provisional 98.65
PRK03578176 hscB co-chaperone HscB; Provisional 98.59
PRK05014171 hscB co-chaperone HscB; Provisional 98.58
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 98.55
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 98.53
PHA03102153 Small T antigen; Reviewed 98.49
PRK00294173 hscB co-chaperone HscB; Provisional 98.35
PRK09430267 djlA Dna-J like membrane chaperone protein; Provis 98.34
KOG0721230 consensus Molecular chaperone (DnaJ superfamily) [ 97.99
PTZ00100116 DnaJ chaperone protein; Provisional 97.98
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 97.85
TIGR00714157 hscB Fe-S protein assembly co-chaperone HscB. This 97.74
PHA02624 647 large T antigen; Provisional 97.56
COG5407610 SEC63 Preprotein translocase subunit Sec63 [Intrac 97.54
KOG1789 2235 consensus Endocytosis protein RME-8, contains DnaJ 97.18
KOG0720490 consensus Molecular chaperone (DnaJ superfamily) [ 96.75
KOG0722329 consensus Molecular chaperone (DnaJ superfamily) [ 96.61
PRK01773173 hscB co-chaperone HscB; Provisional 96.42
KOG0714306 consensus Molecular chaperone (DnaJ superfamily) [ 95.91
KOG1150250 consensus Predicted molecular chaperone (DnaJ supe 93.6
KOG0568342 consensus Molecular chaperone (DnaJ superfamily) [ 90.55
COG5269379 ZUO1 Ribosome-associated chaperone zuotin [Transla 82.25
KOG0431453 consensus Auxilin-like protein and related protein 81.4
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-57  Score=457.60  Aligned_cols=280  Identities=30%  Similarity=0.454  Sum_probs=236.1

Q ss_pred             ccchhhhhhh-------chhchh-ceeecccCCCCCCCcchhHHHHhHHHHHHHHHhccccCCccccccccCCCcccccc
Q 014837            8 SDNVYSIFGH-------AIGKTY-KFVTKWNTDKSPTNKSENEAEAKFDAKFEAYKKGLQRNESSTAGKYNSRGSVDDNF   79 (417)
Q Consensus         8 ~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (417)
                      ..|||.||||       +|+||| |||||||||+||.++   |||+|||+|+|||+                        
T Consensus         3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~---~AeeKFKEI~eAYE------------------------   55 (371)
T COG0484           3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDK---EAEEKFKEINEAYE------------------------   55 (371)
T ss_pred             ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH---HHHHHHHHHHHHHH------------------------
Confidence            3589999999       999999 999999999999955   59999999999999                        


Q ss_pred             ccccccccccccccCCCCCCceeeecCCcccccccCCCCccCCCCccccccCCCCCcccccccCCCCcchhhhccceecc
Q 014837           80 ISRSSVFEKCASRRSHTPSPKTAYISNSTSWHNQDQRSTSRKSGPLLLYEQSSDGSIRRGVRTTSSESTEGSVRRGIRTT  159 (417)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (417)
                           ||||        |++|.+| |++++...+.   .            ...|.+-.|+-- ++.+.|+++|+     
T Consensus        56 -----VLsD--------~eKRa~Y-D~fG~~~~~~---g------------g~gg~g~~~fgg-~~~DIF~~~Fg-----  100 (371)
T COG0484          56 -----VLSD--------PEKRAAY-DQFGHAGFKA---G------------GFGGFGFGGFGG-DFGDIFEDFFG-----  100 (371)
T ss_pred             -----HhCC--------HHHHHHh-hccCcccccc---C------------CcCCCCcCCCCC-CHHHHHHHhhc-----
Confidence                 9999        9999999 9999988551   0            111111111111 34455555442     


Q ss_pred             cCccCCCCCCCCCccceeecCCcccCCcccccCCCCCccCCCcCCccccccCCCcchhcccccccccccCCccCCCCCCC
Q 014837          160 SSEMSEGSSRRGSRTSSQVSEGSSRRGRTSTDSTEGSTRRGRTSETTMESTADPSLSRNMSRRSPIIFSQTTAARRKPPP  239 (417)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sls~~~~r~~~~iF~~~~~~~rkG~D  239 (417)
                                           +|    ..      +..+                                ...+++|.|
T Consensus       101 ---------------------Gg----~~------~~~~--------------------------------~~~~~rG~D  117 (371)
T COG0484         101 ---------------------GG----GG------GRRR--------------------------------PNRPRRGAD  117 (371)
T ss_pred             ---------------------CC----Cc------ccCC--------------------------------CCCcccCCc
Confidence                                 01    00      0001                                112689999


Q ss_pred             EEEEEEeeHHHHhcCcEEEEEEeeeEecCC---------------------------------------------C----
Q 014837          240 VERKLTCTLEELCEGSVKKITINREIVSDD---------------------------------------------G----  270 (417)
Q Consensus       240 I~~~L~ITLEEa~~G~~k~I~i~r~vic~~---------------------------------------------G----  270 (417)
                      +.+.|+|||+||+.|+++.|.+.+.+.|..                                             |    
T Consensus       118 l~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~  197 (371)
T COG0484         118 LRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK  197 (371)
T ss_pred             eEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC
Confidence            999999999999999999999998877631                                             0    


Q ss_pred             ---------ceEEeeEEEEEEeCCCCcCCCEEEEcccCCCCC-CCCCccEEEEEEeecCCcccccccceeEEEEeCHHhH
Q 014837          271 ---------KIYQEEETLRVKLKPGWKKGTKITFEGKGDRKP-GYLPADIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQA  340 (417)
Q Consensus       271 ---------kvv~e~~tL~V~IPpGv~dG~rIrfkGeGd~~~-gg~~GDLiV~I~Vkph~~FrR~G~DL~~~v~IsL~eA  340 (417)
                               +.+.+.++++|.||+|+.+|++|++.|+|++.+ ++.+|||||.|+|++|+.|.|+|+||+++++|++.+|
T Consensus       198 ~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~A  277 (371)
T COG0484         198 DPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEA  277 (371)
T ss_pred             CCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHH
Confidence                     257889999999999999999999999999987 4578999999999999999999999999999999999


Q ss_pred             hCCCEEEEecCCCceeeeeeccccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHhh
Q 014837          341 LTGCSLAVPLLGKEKMNLSFDEIIYPDFEKVIQGQGMPKPKEEGKRGDLRIRFLVEFPTNLSNAQRHEAYTILQ  414 (417)
Q Consensus       341 L~G~ti~I~tLdGr~l~V~IP~~t~~G~~lrL~GeGmP~~~~~g~rGDL~V~f~V~~P~~Ls~~QkelL~eiL~  414 (417)
                      ++|+++.||||+|+ ++|+||+++++|++++|+|+|||..++ ..+|||||+|+|++|++|+.+|+++|+++.+
T Consensus       278 alG~~i~vptl~g~-~~l~ip~Gtq~G~~~rl~gkG~p~~~~-~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~  349 (371)
T COG0484         278 ALGGEIEVPTLDGR-VKLKIPAGTQTGEVFRLRGKGMPKLRS-GGRGDLYVRVKVETPKNLSDEQKELLEEFAK  349 (371)
T ss_pred             hcCCEEEEEecCCC-EEEecCCCCccCcEEEEcCCCccccCC-CCcCCEEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            99999999999998 999999999999999999999998765 4679999999999999999999999999876

>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress Back     alignment and domain information
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] Back     alignment and domain information
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06257 DnaJ DnaJ domain or J-domain Back     alignment and domain information
>smart00271 DnaJ DnaJ molecular chaperone homology domain Back     alignment and domain information
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK01356 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK03578 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK05014 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA03102 Small T antigen; Reviewed Back     alignment and domain information
>PRK00294 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional Back     alignment and domain information
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00100 DnaJ chaperone protein; Provisional Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB Back     alignment and domain information
>PHA02624 large T antigen; Provisional Back     alignment and domain information
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK01773 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
3agz_A190 Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi 2e-31
2qld_A183 Human Hsp40 Hdj1 Length = 183 2e-30
3agx_A181 Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi 3e-30
2q2g_A180 Crystal Structure Of Dimerization Domain Of Hsp40 F 1e-25
1c3g_A170 S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 1 2e-20
2b26_A173 The Crystal Structure Of The Protein Complex Of Yea 3e-20
1nlt_A248 The Crystal Structure Of Hsp40 Ydj1 Length = 248 7e-20
1xao_A121 Hsp40-Ydj1 Dimerization Domain Length = 121 1e-08
3lz8_A329 Structure Of A Putative Chaperone Dnaj From Klebsie 9e-05
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 Length = 190 Back     alignment and structure 
Iteration: 1

 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/187 (38%), Positives = 110/187 (58%), Gaps = 1/187 (0%)
Query: 228 SQTTAARRKPPPVERKLTCTLEELCEGSVKKITINREIVSDDGK-IYQEEETLRVKLKPG 286
           +Q  A +++ PPV   L  +LEE+  G  KK+ I+ + ++ DGK I  E++ L +++K G
Sbjct: 2   AQEPARKKQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKG 61
Query: 287 WKKGTKITFEGKGDRKPGYLPADIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCSL 346
           WK+GTKITF  +GD+    +PADIVF + +K H +F+R G D+     I L +AL GC++
Sbjct: 62  WKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTV 121
Query: 347 AVPLLGKEKMNLSFDEIIYPDFEKVIQGQGMPKPKEEGKRGDLRIRFLVEFPTNLSNAQR 406
            VP L    + + F ++I P   + + G+G+P PK   KRGDL I F V FP  +    R
Sbjct: 122 NVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSR 181
Query: 407 HEAYTIL 413
                +L
Sbjct: 182 TVLEQVL 188
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1 Length = 183 Back     alignment and structure
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Length = 181 Back     alignment and structure
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From Cryptosporidium Parvum, Cgd2_1800 Length = 180 Back     alignment and structure
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 170 Back     alignment and structure
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast Hsp40 Sis1 And Hsp70 Ssa1 Length = 173 Back     alignment and structure
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248 Back     alignment and structure
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain Length = 121 Back     alignment and structure
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 9e-80
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 4e-79
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 5e-73
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 2e-36
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 3e-25
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 5e-23
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 4e-10
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180 Back     alignment and structure
 Score =  242 bits (621), Expect = 9e-80
 Identities = 69/179 (38%), Positives = 98/179 (54%), Gaps = 2/179 (1%)

Query: 236 KPPPVERKLTCTLEELCEGSVKKITINREIVSDDGKIYQEEETLRVKLKPGWKKGTKITF 295
            P   E  L  TLEEL  G  KKI + R+    + K+  EE  + V++KPGWK GTK+T+
Sbjct: 2   APRSHEVPLLVTLEELYLGKRKKIKVTRKRF-IEHKVRNEENIVEVEIKPGWKDGTKLTY 60

Query: 296 EGKGDR-KPGYLPADIVFSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCSLAVPLLGKE 354
            G+GD+  PG  P D+V  I  K HP F R    L + V IPLV+ALTG +  V  L   
Sbjct: 61  SGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNR 120

Query: 355 KMNLSFDEIIYPDFEKVIQGQGMPKPKEEGKRGDLRIRFLVEFPTNLSNAQRHEAYTIL 413
            + +   EI+ P   K++  +GMP   + G++GDL + F + FP +L+  Q+      L
Sbjct: 121 NLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL 179
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181 Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170 Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248 Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query417
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 100.0
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 100.0
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 100.0
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 100.0
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 100.0
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 99.9
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 99.89
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 99.55
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 99.53
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 99.49
2ej7_A82 HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati 99.45
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 99.41
1wjz_A94 1700030A21RIK protein; J-domain, DNAJ like protein 99.37
2dmx_A92 DNAJ homolog subfamily B member 8; DNAJ J domain, 99.37
1iur_A88 KIAA0730 protein; DNAJ like domain, riken structur 99.36
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 99.35
2dn9_A79 DNAJ homolog subfamily A member 3; J-domain, TID1, 99.34
2yua_A99 Williams-beuren syndrome chromosome region 18 prot 99.3
2lgw_A99 DNAJ homolog subfamily B member 2; J domain, HSJ1A 99.29
2ctq_A112 DNAJ homolog subfamily C member 12; J-domain, chap 99.28
2ctr_A88 DNAJ homolog subfamily B member 9; J-domain, chape 99.27
1bq0_A103 DNAJ, HSP40; chaperone, heat shock, protein foldin 99.27
1hdj_A77 Human HSP40, HDJ-1; molecular chaperone; NMR {Homo 99.26
2qwo_B92 Putative tyrosine-protein phosphatase auxilin; cha 99.26
2ctp_A78 DNAJ homolog subfamily B member 12; J-domain, chap 99.26
2cug_A88 Mkiaa0962 protein; DNAJ-like domain, structural ge 99.23
2ctw_A109 DNAJ homolog subfamily C member 5; J-domain, chape 99.23
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 99.22
2och_A73 Hypothetical protein DNJ-12; HSP40, J-domain, chap 99.21
1n4c_A182 Auxilin; four helix bundle, protein binding; NMR { 99.15
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 99.13
2l6l_A155 DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, 99.13
3apq_A210 DNAJ homolog subfamily C member 10; thioredoxin fo 99.12
2o37_A92 Protein SIS1; HSP40, J-domain, cochaperone, APC900 99.11
2ys8_A90 RAB-related GTP-binding protein RABJ; DNAJ domain, 99.11
2qsa_A109 DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s 99.1
3ag7_A106 Putative uncharacterized protein F9E10.5; J-domain 99.07
1gh6_A114 Large T antigen; tumor suppressor, oncoprotein, an 99.04
3bvo_A207 CO-chaperone protein HSCB, mitochondrial precurso; 98.92
1fpo_A171 HSC20, chaperone protein HSCB; molecular chaperone 98.89
3hho_A174 CO-chaperone protein HSCB homolog; structural geno 98.88
2pf4_E174 Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, 98.87
1faf_A79 Large T antigen; J domain, HPD motif, anti-paralle 98.82
3uo3_A181 J-type CO-chaperone JAC1, mitochondrial; structura 98.79
3apo_A 780 DNAJ homolog subfamily C member 10; PDI family, th 98.75
2guz_A71 Mitochondrial import inner membrane translocase su 98.71
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 98.18
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 90.76
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
Probab=100.00  E-value=3.9e-54  Score=429.83  Aligned_cols=177  Identities=25%  Similarity=0.325  Sum_probs=165.0

Q ss_pred             CCCCCCEEEEEEeeHHHHhcCcEEEEEEeeeEecCCCceEEe-eEEEEEEeCCCCcCCCEEEEcccCCCCC-CCCCccEE
Q 014837          234 RRKPPPVERKLTCTLEELCEGSVKKITINREIVSDDGKIYQE-EETLRVKLKPGWKKGTKITFEGKGDRKP-GYLPADIV  311 (417)
Q Consensus       234 ~rkG~DI~~~L~ITLEEa~~G~~k~I~i~r~vic~~Gkvv~e-~~tL~V~IPpGv~dG~rIrfkGeGd~~~-gg~~GDLi  311 (417)
                      +++|.|+.++|.|+|+|+|.||++.|.+.+.+||..|.+..+ .++++|.||||+.+|++|+|+|+|++.+ ++.+|||+
T Consensus       137 ~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~gg~~GDL~  216 (329)
T 3lz8_A          137 AARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLW  216 (329)
T ss_dssp             CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC---CCCCCEE
T ss_pred             cCCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCCCCCCcEE
Confidence            568999999999999999999999999999999998876543 7799999999999999999999999876 45799999


Q ss_pred             EEEEeecCCcccccccceeEEEEeCHHhHhCCCEEEEecCCCceeeeeeccccCCCcEEEEcCCCCCCCCCCCCCCCEEE
Q 014837          312 FSIDEKRHPLFRRTGDDLEIGVEIPLVQALTGCSLAVPLLGKEKMNLSFDEIIYPDFEKVIQGQGMPKPKEEGKRGDLRI  391 (417)
Q Consensus       312 V~I~Vkph~~FrR~G~DL~~~v~IsL~eAL~G~ti~I~tLdGr~l~V~IP~~t~~G~~lrL~GeGmP~~~~~g~rGDL~V  391 (417)
                      |+|++++|+.|+|+|+||+++++|+|++|++|+++.|+||||+ +.|+||+++++|++++|+|+|||..   +.+|||||
T Consensus       217 v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~-v~l~ip~gt~~g~~~rl~G~GmP~~---~~rGDL~v  292 (329)
T 3lz8_A          217 LVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPGSQAGQRLRIKGKGLVSK---THTGDLFA  292 (329)
T ss_dssp             EEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTTCCTTCEEEETTCSCBCS---SCBCCEEE
T ss_pred             EEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCC-EEEEECCCCCCCCEEEEcCCCCCCC---CCCCCEEE
Confidence            9999999999999999999999999999999999999999997 7999999999999999999999976   36899999


Q ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Q 014837          392 RFLVEFPTNLSNAQRHEAYTILQ  414 (417)
Q Consensus       392 ~f~V~~P~~Ls~~QkelL~eiL~  414 (417)
                      +|+|.||++|+++|+++|+++.+
T Consensus       293 ~~~V~~P~~l~~~q~~~l~~~~~  315 (329)
T 3lz8_A          293 VIKIVMPTKPDEKARELWQQLAA  315 (329)
T ss_dssp             EEEECCCSSCCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            99999999999999999999876
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Back     alignment and structure
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Back     alignment and structure
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Back     alignment and structure
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Back     alignment and structure
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Back     alignment and structure
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Back     alignment and structure
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Back     alignment and structure
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Back     alignment and structure
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Back     alignment and structure
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Back     alignment and structure
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Back     alignment and structure
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Back     alignment and structure
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Back     alignment and structure
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Back     alignment and structure
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Back     alignment and structure
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Back     alignment and structure
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Back     alignment and structure
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Back     alignment and structure
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 417
d1c3ga290 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba 4e-22
d1c3ga180 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba 1e-17
d1nlta280 b.4.1.1 (A:258-337) Mitochondrial protein import p 8e-17
d1nlta174 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei 4e-11
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90 Back     information, alignment and structure

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.7 bits (217), Expect = 4e-22
 Identities = 27/85 (31%), Positives = 48/85 (56%)

Query: 322 FRRTGDDLEIGVEIPLVQALTGCSLAVPLLGKEKMNLSFDEIIYPDFEKVIQGQGMPKPK 381
           F+R GDDL   + +   ++L G S  +  +    + LS  + + P       GQGMP PK
Sbjct: 2   FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPK 61

Query: 382 EEGKRGDLRIRFLVEFPTNLSNAQR 406
              +RG+L +++ V++P +L++AQ+
Sbjct: 62  NPSQRGNLIVKYKVDYPISLNDAQK 86
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 Back     information, alignment and structure
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query417
d1c3ga290 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.89
d1nlta280 Mitochondrial protein import protein mas5 (Hsp40, 99.8
d1nlta174 Mitochondrial protein import protein mas5 (Hsp40, 99.69
d1c3ga180 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.65
d1xbla_75 DnaJ chaperone, N-terminal (J) domain {Escherichia 99.42
d1wjza_94 CSL-type zinc finger-containing protein 3 (J-domai 99.38
d1iura_88 Hypothetical protein KIAA0730 {Human (Homo sapiens 99.36
d1gh6a_114 Large T antigen, the N-terminal J domain {Simian v 99.25
d1nlta174 Mitochondrial protein import protein mas5 (Hsp40, 99.2
d1hdja_77 HSP40 {Human (Homo sapiens) [TaxId: 9606]} 99.17
d1c3ga290 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.13
d1nlta280 Mitochondrial protein import protein mas5 (Hsp40, 99.06
d1nz6a_98 Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} 99.05
d1fpoa176 HSC20 (HSCB), N-terminal (J) domain {Escherichia c 99.02
d1fafa_79 Large T antigen, the N-terminal J domain {Murine p 98.84
d1c3ga180 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 98.64
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=5.1e-24  Score=173.46  Aligned_cols=89  Identities=30%  Similarity=0.575  Sum_probs=85.3

Q ss_pred             cccccccceeEEEEeCHHhHhCCCEEEEecCCCceeeeeeccccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEECCCC
Q 014837          321 LFRRTGDDLEIGVEIPLVQALTGCSLAVPLLGKEKMNLSFDEIIYPDFEKVIQGQGMPKPKEEGKRGDLRIRFLVEFPTN  400 (417)
Q Consensus       321 ~FrR~G~DL~~~v~IsL~eAL~G~ti~I~tLdGr~l~V~IP~~t~~G~~lrL~GeGmP~~~~~g~rGDL~V~f~V~~P~~  400 (417)
                      .|+|+|+||+++++|++++|++|+++.|+|+||+.+.|++|+++++|+.++|+|+|||..++++.+|||||+|+|.+|++
T Consensus         1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~   80 (90)
T d1c3ga2           1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPIS   80 (90)
T ss_dssp             SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSS
T ss_pred             CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCC
Confidence            38999999999999999999999999999999999999999999999999999999999877678999999999999999


Q ss_pred             CCHHHHHHH
Q 014837          401 LSNAQRHEA  409 (417)
Q Consensus       401 Ls~~QkelL  409 (417)
                      ||++|+++|
T Consensus        81 ls~~qk~~l   89 (90)
T d1c3ga2          81 LNDAQKRAI   89 (90)
T ss_dssp             CCTTHHHHT
T ss_pred             CCHHHHHhh
Confidence            999999876
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure