Citrus Sinensis ID: 014872

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
Protein Sequence
MKWLCSSLDARSLKPLVRYNKSDFHFSQSLVLEKLPTHFNTKLALKPSKCCIKTSSASASIDIDMVRNKQGIYTQKQNNKVVVLWDLDNKPPRGPPYDAAMSLRRVAERFGEVTDISAYANRHAFIHLPQWVIQERRERKQFDILERRGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKERYISGNDKYNEAARSLLKPKVGYGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNRGLGQHADLWVPWIEVENGELTERDLVPRTRRTTTEDFERDGLGLFSLTEFDGVVGFEDETDLDSVVNELVAERTEFGGVRISMFSEGEEEEDYWVTEEAGGDYLLEGGELEEQDSYF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccHHHHHHHHHHHHHcccEEEEHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHccccEEEEccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEcccccccccccHHHHcccccEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEccccccccccccccccccccccccccccHHHHEEccccccccEEEEEccccEEEEcccccEEEEEEEccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcHHHHHHHHHHHccccccccHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHccccEEEEcccccccccEcEEEEcHHHHHcccccHHHcccccccccccccccccccccccccccccEcccccccccccccEEEEEEcccccEEEEEEcccccccccEEEEcccccEEEcccccHHccccc
Coil and Loop (DISEMBL)
mkwlcssldarslkplvrynksdfhfsqslvleklpthfntklalkpskcciktssasasidiDMVRnkqgiytqkqnnKVVVLWdldnkpprgppydaaMSLRRVAERFGEVTDISAYANRHAFIHLPQWVIQERRERKQFDIlerrgvavpndpyicgvcgrkcktnlDLKKHFKQLHERERQKKLNRMkslkgkkrqKYKERYISGNDKYNEAARSLlkpkvgyglgsELRRAGVFVktvrdkpqAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARdanlgtvvvgdsnrglgqhadlwvpwievengelterdlvprtrrtttedferdglglfsltefdgvvgfedetdLDSVVNELVAERTefggvrismfsegeeeedywvteeaggdylleggeleeqdsyf
Flexible Loop (DISEMBL)
mkwlcssldarslkpLVRYNKSDFHFSQSLVLEKLPTHFNtklalkpskcciktssasasididmVRNKQGiytqkqnnkVVVLWDLDNKPPRGPPYDAAMSLRRVAERFGEVTDISAYANRHAFIHLPQWVIQERRERKQFDilerrgvavpndpyicgVCGRKCKTNLDLKKhfkqlhererqkklnrmkslkgkkrqkykeryisgndkyneAARSLLKPKVGYGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKArdanlgtvvvgdsnrglgqhadlwvPWIEvengelterdlvprtrrtttedferdglglfsLTEFDGVVGFEDETDLDSVVNELVAertefggvrismfsegeeeedywVTEEAGGdylleggeleeqdsyf
Low Complexity Region (SEG)
MKWLCSSLDARSLKPLVRYNKSDFHFSQSLVLEKLPTHFNTKLALKPSKCCIKTSSASASIDIDMVRNKQGIYTQKQNNKVVVLWDLDNKPPRGPPYDAAMSLRRVAERFGEVTDISAYANRHAFIHLPQWVIQERRERKQFDILERRGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKERYISGNDKYNEAARSLLKPKVGYGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNRGLGQHADLWVPWIEVENGELTERDLVPrtrrtttEDFERDGLGLFSLTEFDGVVGFEDETDLDSVVNELVAERTEFGGVRISMFSEGEEEEDYWVTeeaggdylleggeleeQDSYF
Disordered region (IsUnstruct)
***LCSSLDARSLKPLVRYNKSDFHFSQSLVLEKLPTHFNTKLALKPSKCCIKTSSASASIDIDMVRNKQGIYTQKQNNKVVVLWDLDN*********AAMSLRRVAERFGEVTDISAYANRHAFIHLPQWVIQERRERKQFDILERRGVAVPNDPYICGVCGRKCKTNLDLKKHF******************************************SLLKPKVGYGLGSELRRAGVFVKTVRDKPQAADWALKR******SSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNRGLGQHADLWVPWIEVE************************GLGLFSLTEFDGVVGFEDETDLDSVVNELVAERTEFGGVRI************************************
Disordered Region (DISOPRED)
*******LDARSLKPLVRYNKSDFHFS************************************************KQNNKVVVLWDLDNKPPRGPPYDAAMSLRRVAERFGEVTDISAYANRHAFIHLPQWV*****************VAVPNDPYICGVCGRKCKTNLDLKKHFKQLH*************************YISGNDKYNEAARSLLKPKVGYGLGSELRRAGVFVKTVR*********LKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNRGLGQHADLWVPWIEVENGELTERDLV******************FSLTEFDGVVGFEDETDLDSVVNELVAERTEFGGVRISMFSEGEEEEDYWVTEEAGGDYLLEGGE********
Disordered Region (DISEMBL)
MKWLCSSLDARSLKPLVRYNKSDFHFSQSLVLEKLPTHFNTKLALKPSKCCIKTSSASASIDIDMVRNKQGIYTQKQNNKVVVLWDLDNKPPRGPPYDAAMSLRRVAERFGEVTDISAYANRHAFIHLPQWVIQERRERKQFDILERRGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRM**********YKERYISGNDKYNEAARSLLKPKVGYGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNRGLGQHADLWVPWIEVENGELTERDLVPRTRRTTTEDFERDGLGLFSLTEFDGVVGFEDETDLDSVVNELVAERTEFGGVRISMFSEGEEEEDYWVTEEAGGDYLLEGGELEEQDSYF
Disordered Region (DISPRO)
*KWLCSSLDARSLKPLVRYNKSDFHFSQSLVLEKLPTHFNTKLALKPSKCCIKTSSASASIDIDMVRNKQGIYTQKQNNKVVVLWDLDNKPPRGPPYDAAMSLRRVAERFGEVTDISAYANRHAFIHLPQWVIQERRERKQFDILERRGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKERYISGNDKYNEAARSLLKPKVGYGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNRGLGQHADLWVPWIEVENGELTERDLVPRTRRTTTEDFERDGLGLFSLTEFDGVVGFEDETDLDSVVNELVAERTEFGGVRISMFSEGEEEEDYWVTEEAGGDYLLEGGEL******F
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKWLCSSLDARSLKPLVRYNKSDFHFSQSLVLEKLPTHFNTKLALKPSKCCIKTSSASASIDIDMVRNKQGIYTQKQNNKVVVLWDLDNKPPRGPPYDAAMSLRRVAERFGEVTDISAYANRHAFIHLPQWVIQERRERKQFDILERRGVAVPNDPYICGVCGRKCKTNLDLKKHFxxxxxxxxxxxxxxxxxxxxxKRQKYKERYISGNDKYNEAARSLLKPKVGYGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNRGLGQHADLWVPWIEVENGELTERDLVPRTRRTTTEDFERDGLGLFSLTEFDGVVGFEDETDLDSVVNELVAERTEFGGVRISMFSEGEEEEDYWVTEEAGGDYLLEGGELEEQDSYF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
449447265	420	PREDICTED: uncharacterized protein LOC10	0.940	0.933	0.647	1e-142
449532009	420	PREDICTED: uncharacterized LOC101206044	0.928	0.921	0.655	1e-142
224137612	345	predicted protein [Populus trichocarpa]	0.805	0.973	0.706	1e-137
255538232	413	nucleic acid binding protein, putative [	0.928	0.937	0.620	1e-137
225458686	444	PREDICTED: uncharacterized protein LOC10	0.872	0.819	0.670	1e-137
15242250	396	C2H2-like zinc finger protein [Arabidops	0.918	0.967	0.592	1e-130
357437399	360	hypothetical protein MTR_1g015930 [Medic	0.741	0.858	0.696	1e-129
21553540	336	unknown [Arabidopsis thaliana]	0.774	0.961	0.653	1e-124
297796005	338	hypothetical protein ARALYDRAFT_357440 [	0.769	0.949	0.650	1e-121
356562259	403	PREDICTED: uncharacterized protein LOC10	0.745	0.771	0.650	1e-120

>gi|449447265|ref|XP_004141389.1| PREDICTED: uncharacterized protein LOC101206044 [Cucumis sativus]

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 261/403 (64%), Positives = 318/403 (78%), Gaps = 11/403 (2%)

Query: 19  YNKSDFHFSQSLVLEKLPTHFNTKLALKPSKCCIKTSSASASIDIDMVRNKQGIYTQKQN 78
           ++ +  HF   + +   PT F      +        +S++++  IDMVRN++GI+T KQ+
Sbjct: 25  FSNNPIHFKHRVSVVVKPT-FQASFRWRIRATAENGASSASTSQIDMVRNREGIFTAKQS 83

Query: 79  NKVVVLWDLDNKPPRGPPYDAAMSLRRVAERFGEVTDISAYANRHAFIHLPQWVIQERRE 138
            KVVVLWDLDNKPPRGPPY+AAM+L+RVA+RFG+V D+SAYANRHAFIHLPQWV++ERRE
Sbjct: 84  -KVVVLWDLDNKPPRGPPYEAAMALKRVAQRFGQVVDMSAYANRHAFIHLPQWVVEERRE 142

Query: 139 RKQFDILERRGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKK 198
           R+Q DILER+G+  P++ Y+CGVCGRKCKTNLDLKKHFKQLHERERQKKLNRM+SLKGKK
Sbjct: 143 RRQLDILERKGLFTPSESYVCGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMRSLKGKK 202

Query: 199 RQKYKERYISGNDKYNEAARSLLKPKVGYGLGSELRRAGVFVKTVRDKPQAADWALKRQM 258
           RQ+YKER++SGN KYNEAARS++ PKVGYGL SELRRAG FVKTV DKPQAADWALK+QM
Sbjct: 203 RQRYKERFVSGNHKYNEAARSVITPKVGYGLASELRRAGFFVKTVEDKPQAADWALKKQM 262

Query: 259 QHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNRGLGQHADLWVPWIEVENG 318
           QHSMS G+DWMFLVSDD+DF EMLRKA++ANLGTVVVGD +R LG+HADLWVPW+ VENG
Sbjct: 263 QHSMSRGIDWMFLVSDDSDFSEMLRKAKEANLGTVVVGDRDRALGRHADLWVPWMGVENG 322

Query: 319 ELTERDLVPRTRRTTTEDFERD-GLGLFSLTEFDGVVGFEDETDLDSVVNELVAERTEFG 377
           ++TE DLVP+  R    D E D G   FS++ F G +     +DL+SVV EL +  TEF 
Sbjct: 323 DVTEEDLVPKKWRMRRRDKEVDEGDDGFSVSSFYGDIA---GSDLESVVEELASTSTEFN 379

Query: 378 GVRISMFSEG---EEEEDYWVTEEAGGDYLLEGGELEEQDSYF 417
           G+RIS FSEG   EEE+D WV E+   DYLL     +E+D YF
Sbjct: 380 GLRISAFSEGEDDEEEDDDWVEEDVAPDYLLVMS--DEEDGYF 420

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532009|ref|XP_004172977.1| PREDICTED: uncharacterized LOC101206044 [Cucumis sativus]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 261/398 (65%), Positives = 315/398 (79%), Gaps = 11/398 (2%)

Query: 24  FHFSQSLVLEKLPTHFNTKLALKPSKCCIKTSSASASIDIDMVRNKQGIYTQKQNNKVVV 83
            HF   + +   PT F      +        +S++++  IDMVRN++GI+T KQ+ KVVV
Sbjct: 30  IHFKHRVSVVVKPT-FQASFRWRIRATAENGASSASTSQIDMVRNREGIFTAKQS-KVVV 87

Query: 84  LWDLDNKPPRGPPYDAAMSLRRVAERFGEVTDISAYANRHAFIHLPQWVIQERRERKQFD 143
           LWDLDNKPPRGPPY+AAM+L+RVA+RFG+V D+SAYANRHAFIHLPQWV++ERRER+Q D
Sbjct: 88  LWDLDNKPPRGPPYEAAMALKRVAQRFGQVVDMSAYANRHAFIHLPQWVVEERRERRQLD 147

Query: 144 ILERRGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYK 203
           ILER+G+  P++ Y+CGVCGRKCKTNLDLKKHFKQLHERERQKKLNRM+SLKGKKRQ+YK
Sbjct: 148 ILERKGLFTPSESYVCGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMRSLKGKKRQRYK 207

Query: 204 ERYISGNDKYNEAARSLLKPKVGYGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMS 263
           ER++SGN KYNEAARS++ PKVGYGL SELRRAG FVKTV DKPQAADWALK+QMQHSMS
Sbjct: 208 ERFVSGNHKYNEAARSVITPKVGYGLASELRRAGFFVKTVEDKPQAADWALKKQMQHSMS 267

Query: 264 SGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNRGLGQHADLWVPWIEVENGELTER 323
            G+DWMFLVSDD+DF EMLRKA++ANLGTVVVGD +R LG+HADLWVPW+ VENG++TE 
Sbjct: 268 RGIDWMFLVSDDSDFSEMLRKAKEANLGTVVVGDRDRALGRHADLWVPWMGVENGDVTEE 327

Query: 324 DLVPRTRRTTTEDFERD-GLGLFSLTEFDGVVGFEDETDLDSVVNELVAERTEFGGVRIS 382
           DLVP+  R    D E D G   FS++ F G +     +DL+SVV EL +  TEF G+RIS
Sbjct: 328 DLVPKKWRMRRRDKEVDEGDDGFSVSSFYGDIA---GSDLESVVEELASTSTEFNGLRIS 384

Query: 383 MFSEG---EEEEDYWVTEEAGGDYLLEGGELEEQDSYF 417
            FSEG   EEE+D WV E+   DYLL     +E+D YF
Sbjct: 385 AFSEGEDDEEEDDDWVEEDVAPDYLLVMS--DEEDGYF 420

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137612|ref|XP_002327169.1| predicted protein [Populus trichocarpa] gi|222835484|gb|EEE73919.1| predicted protein [Populus trichocarpa]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/348 (70%), Positives = 285/348 (81%), Gaps = 12/348 (3%)

Query: 65  MVRNKQGIYTQKQNNKVVVLWDLDNKPPRGPPYDAAMSLRRVAERFGEVTDISAYANRHA 124
           MV+N+QGIYT KQN KVVVLWDLDNKPPRGPPY AAM+L+ VA+RFGEV D+ AYANRHA
Sbjct: 1   MVKNRQGIYTSKQN-KVVVLWDLDNKPPRGPPYPAAMALKTVAQRFGEVIDMCAYANRHA 59

Query: 125 FIHLPQWVIQERRERKQFDILERRGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLHERER 184
           FIHLP WV++ERRERK  DILER+ +  P+ PY+CGVCGRKCKTNLDLKKHFKQLHERER
Sbjct: 60  FIHLPHWVLEERRERKHLDILERKEIVSPSQPYVCGVCGRKCKTNLDLKKHFKQLHERER 119

Query: 185 QKKLNRMKSLKGKKRQKYKERYISGNDKYNEAARSLLKPKVGYGLGSELRRAGVFVKTVR 244
           QKK+NRM+SLKGKKRQ+YKER++SGN KYNE AR LL PK+GYGL +EL+RAGV+VKTV 
Sbjct: 120 QKKVNRMRSLKGKKRQRYKERFVSGNHKYNEEARRLLTPKIGYGLAAELKRAGVYVKTVE 179

Query: 245 DKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNRGLGQ 304
           DKPQAADWALKRQ++HSMS GVDW+ LVSDD+DF E+LRKAR+ANLGTVVVGD +R LG+
Sbjct: 180 DKPQAADWALKRQIEHSMSRGVDWLVLVSDDSDFSEILRKAREANLGTVVVGDRDRALGR 239

Query: 305 HADLWVPWIEVENGELTERDLVPRTRRTTTEDFERDGLGLFSLTEFDGVVGFEDETDLDS 364
           HADLWVPWI VENGELTE+DLVP+  R  +ED E D  GLFS+T+FD   G     DL+ 
Sbjct: 240 HADLWVPWIGVENGELTEKDLVPKG-RWRSEDLENDE-GLFSVTDFD-EDGDYGGNDLEG 296

Query: 365 VVNELVAERTEFGGVRISMFSEGEEEEDYWVTEEAGGDYLLEGGELEE 412
            V+ LV  R+ F G RIS FSEGEEE++         DYLL   E EE
Sbjct: 297 FVDGLVMARSGFNGTRISAFSEGEEEDEQ--------DYLLYDSEYEE 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538232|ref|XP_002510181.1| nucleic acid binding protein, putative [Ricinus communis] gi|223550882|gb|EEF52368.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 252/406 (62%), Positives = 320/406 (78%), Gaps = 19/406 (4%)

Query: 1   MKWLCSS-LDARS--LKPLVRYNKSDFHFSQSLVLEKLPTHFNTKLALK-----PSKCCI 52
           M  LCS+ L+  S  LKP    +    HFS      +     + KL+L      P++C +
Sbjct: 1   MPPLCSNPLNTYSPLLKPRFHLHYPILHFSH-----QFRNSSSKKLSLTCKPSLPNRCLV 55

Query: 53  KTSSASASIDIDMVRNKQGIYTQKQNNKVVVLWDLDNKPPRGPPYDAAMSLRRVAERFGE 112
             +S++++ +IDMV N+QG+YT K++ KVVVLWDLDNKPPRGPPY AA++L+ +A++FGE
Sbjct: 56  INASSASTSEIDMVPNRQGVYTSKKS-KVVVLWDLDNKPPRGPPYLAALALKNLAQKFGE 114

Query: 113 VTDISAYANRHAFIHLPQWVIQERRERKQFDILERRGVAVPNDPYICGVCGRKCKTNLDL 172
           + ++SAYANRHAFIHLP WV+QERRERKQ DILER+G+    DPYICGVCGRKCKTN++L
Sbjct: 115 IIEMSAYANRHAFIHLPNWVLQERRERKQLDILERKGLVNQTDPYICGVCGRKCKTNMEL 174

Query: 173 KKHFKQLHERERQKKLNRMKSLKGKKRQKYKERYISGNDKYNEAARSLLKPKVGYGLGSE 232
           KKHFKQLHERERQKKLNRM+SLKGKKRQ++KER+ISGN KYNE A+ LL PKVGYGL  E
Sbjct: 175 KKHFKQLHERERQKKLNRMRSLKGKKRQRFKERFISGNHKYNEEAKKLLTPKVGYGLAQE 234

Query: 233 LRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGT 292
           L+RAGV+VKTV+DKPQAADWALKRQ++HSMS GVDW+FL+SDD+DF ++LR+AR+ANLGT
Sbjct: 235 LKRAGVYVKTVQDKPQAADWALKRQIEHSMSRGVDWLFLISDDSDFSDILRRAREANLGT 294

Query: 293 VVVGDSNRGLGQHADLWVPWIEVENGELTERDLVPRTRRTTTEDFERDGL-GLFSLTEFD 351
           VVVGD +R LG+HADLWVPWI VENGE+TE DLV ++ R  +E+F  DG  G FS+T FD
Sbjct: 295 VVVGDRDRALGRHADLWVPWIGVENGEVTENDLVLKS-RIESENF--DGKDGFFSITHFD 351

Query: 352 GVVGFEDETDLDSVVNELVAERTEFGGVRISMFSEGEEE-EDYWVT 396
           G +G   E D+D V+ EL    +E+   R+S+FSEGEEE EDY+++
Sbjct: 352 GEIGGVVEGDMDGVIEELAGVSSEWDSARVSVFSEGEEEKEDYFLS 397

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458686|ref|XP_002282947.1| PREDICTED: uncharacterized protein LOC100248940 [Vitis vinifera]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 252/376 (67%), Positives = 294/376 (78%), Gaps = 12/376 (3%)

Query: 45  LKPSKCCIKTSSASASIDIDMVRNKQGIYTQKQNNKVVVLWDLDNKPPRGPPYDAAMSLR 104
           L PSK  I    ASA+ +IDMVRNK G+YT K+  KVVVLWDLDNKPPRGPPY AA +L 
Sbjct: 62  LNPSKWRINVR-ASAADEIDMVRNKDGVYTAKRK-KVVVLWDLDNKPPRGPPYAAATALI 119

Query: 105 RVAERFGEVTDISAYANRHAFIHLPQWVIQERRERKQFDILERRGVAVPNDPYICGVCGR 164
            +A+RFG++ DISAYANRHAF+HLPQWV++ER ER++ D LER+G+  P +PYICGVCGR
Sbjct: 120 ELAQRFGDIVDISAYANRHAFVHLPQWVLEERHERRRMDFLERKGITTPAEPYICGVCGR 179

Query: 165 KCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKERYISGNDKYNEAARSLLKPK 224
           KC+TNLDLKKHFKQLHERERQKKLNRM+SLKGKKRQ+YKE++ISGN KY EAARSL+ PK
Sbjct: 180 KCRTNLDLKKHFKQLHERERQKKLNRMRSLKGKKRQRYKEKFISGNTKYEEAARSLITPK 239

Query: 225 VGYGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRK 284
           VGYGL SELRRAGVFVKTV DKPQAADWALKRQMQHSMS G+DW+ LVSDD+DF +MLR+
Sbjct: 240 VGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWLVLVSDDSDFADMLRR 299

Query: 285 ARDANLGTVVVGDSNRGLGQHADLWVPWIEVENGELTERDLVPRTRRTTTEDFERDGLGL 344
           AR++NLGTVVVGD +R LG+HADLWVPW  VEN E+TE DL PR RR +  DFE    GL
Sbjct: 300 ARESNLGTVVVGDWHRALGRHADLWVPWTGVENREVTEEDLRPRNRRRS--DFEDRDDGL 357

Query: 345 FSLTEFDGVVGFEDETDLDSVVNELVAERTEFGGVRISMFSEGEEEEDYWVTEEA---GG 401
           FS+T F+G         LD +V+ELV  R+E  GV IS FSEGEE+   W+ EE    G 
Sbjct: 358 FSVTHFNGDG--IGGGILDGLVDELVVNRSECNGVNISAFSEGEED---WIGEELDKRGR 412

Query: 402 DYLLEGGELEEQDSYF 417
                G  L+E D Y 
Sbjct: 413 VQFQAGQSLDEDDDYI 428

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242250|ref|NP_200014.1| C2H2-like zinc finger protein [Arabidopsis thaliana] gi|10177736|dbj|BAB11049.1| unnamed protein product [Arabidopsis thaliana] gi|14517514|gb|AAK62647.1| AT5g52010/MSG15_9 [Arabidopsis thaliana] gi|22136578|gb|AAM91075.1| AT5g52010/MSG15_9 [Arabidopsis thaliana] gi|332008775|gb|AED96158.1| C2H2-like zinc finger protein [Arabidopsis thaliana]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/405 (59%), Positives = 294/405 (72%), Gaps = 22/405 (5%)

Query: 1   MKWLCSSLDARSLKPLVRYNKSDFHFSQSLVLEKLPTHFNTKLALKPSKCCIKTSSASAS 60
           M   C+S++    KP + +    F FS S       T F  +   +  + C+K++S+S  
Sbjct: 1   MSLFCNSIETLYPKPFLSHKSHFFTFSNSKFQNPKFTSFPLRHQWR-IESCLKSASSS-- 57

Query: 61  IDIDMVRNKQGIYTQKQNNKVVVLWDLDNKPPRGPPYDAAMSLRRVAERFGEVTDISAYA 120
            +IDMVRNK+GI+  K+  KVVVLWDLDNKPPRGPPY+AA +LR+VAE+ G V +ISAYA
Sbjct: 58  -EIDMVRNKEGIFAPKEK-KVVVLWDLDNKPPRGPPYEAATALRKVAEKLGRVVEISAYA 115

Query: 121 NRHAFIHLPQWVIQERRERKQFDILERRGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLH 180
           NRHAFIHLP WV++ERRER+  D +ER+G   P DPYICGVCGRKCKTNLDLKKHFKQLH
Sbjct: 116 NRHAFIHLPHWVVEERRERRNLDFMERKGEVTPIDPYICGVCGRKCKTNLDLKKHFKQLH 175

Query: 181 ERERQKKLNRMKSLKGKKRQKYKERYISGNDKYNEAARSLLKPKVGYGLGSELRRAGVFV 240
           ERERQKK+NRM+SLKGKKRQK+KERY+SGN+KYNEAARSLL PKVGYGL +ELRRAGV+V
Sbjct: 176 ERERQKKVNRMRSLKGKKRQKFKERYVSGNEKYNEAARSLLTPKVGYGLEAELRRAGVYV 235

Query: 241 KTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNR 300
           KTV DKPQAADWA+KRQ+QHSM+ G+DW+ LVSDD DF +MLRKAR+A+LGT+VV D +R
Sbjct: 236 KTVEDKPQAADWAVKRQIQHSMTRGIDWLVLVSDDKDFSDMLRKAREADLGTLVVSDMDR 295

Query: 301 GLGQHADLWVPWIEVENGELTERDLVPRTRRTTTEDFERDGLGLFSLTEFDGVVGFEDET 360
            LG+HADLWVPW  VE GE+ E+DL+P  R      FE D +G     E   +   EDE 
Sbjct: 296 ALGRHADLWVPWSGVEKGEIGEKDLIPGKR----PRFEEDEVGFGGNDELFSLSYDEDEK 351

Query: 361 DLDSVVNELVAERTEFGGVRISMFSEGEEEEDYWVTEEAGGDYLL 405
                  E+  E   FG   +S FS     ED WV +E  GD++L
Sbjct: 352 ------AEMTVESDGFGRFNVSAFS-----EDEWVEDE--GDFVL 383

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437399|ref|XP_003588975.1| hypothetical protein MTR_1g015930 [Medicago truncatula] gi|355478023|gb|AES59226.1| hypothetical protein MTR_1g015930 [Medicago truncatula]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/323 (69%), Positives = 263/323 (81%), Gaps = 14/323 (4%)

Query: 32  LEKLPTHFNTK---LALKPS-----KCCIKTSSASASIDIDMVRNKQGIYTQKQNNKVVV 83
           +  L  HF T    L+LKP      +CC  +++ +   DIDMV+ KQG Y QKQN KV V
Sbjct: 1   MNTLSLHFYTPHSFLSLKPKPQPRIQCC--STNNNIIDDIDMVKTKQGTYEQKQN-KVCV 57

Query: 84  LWDLDNKPPRGPPYDAAMSLRRVAERFGEVTDISAYANRHAFIHLPQWVIQERRERKQFD 143
           LWDLDNKPPRGPPY+AA+SL+ +AERFG+VTDISAYANRHAFIHLPQWV+ +RRERK  D
Sbjct: 58  LWDLDNKPPRGPPYNAAVSLKNLAERFGDVTDISAYANRHAFIHLPQWVLNQRRERKNLD 117

Query: 144 ILERRGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYK 203
           ILER+G+  P +PY+C VCGRKCKTN+DLKKHFKQLH+RERQKKLNR+ SLKGKKRQKYK
Sbjct: 118 ILERKGIINPPEPYVCSVCGRKCKTNVDLKKHFKQLHQRERQKKLNRLNSLKGKKRQKYK 177

Query: 204 ERYISGNDKYNEAARSLLKPKVGYGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMS 263
           ER++SG+DKYN+A R +LKPKVGYGL SELRRAGVFVKTV DKPQAADWALK+QM HSMS
Sbjct: 178 ERFVSGDDKYNDAVREILKPKVGYGLASELRRAGVFVKTVEDKPQAADWALKKQMMHSMS 237

Query: 264 SGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNRGLGQHADLWVPWIEVENGELTER 323
            G+DW+FLVSDD+DF EMLRKAR+ANLGTVVVGD +R LG+HADLWVPW  VENGE+ + 
Sbjct: 238 RGIDWLFLVSDDSDFSEMLRKAREANLGTVVVGDVDRALGRHADLWVPWNAVENGEVMDM 297

Query: 324 DLVPRT---RRTTTEDFERDGLG 343
           DL+PR    RRT +     D  G
Sbjct: 298 DLIPRNRDRRRTNSTSTTMDDFG 320

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553540|gb|AAM62633.1| unknown [Arabidopsis thaliana]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/341 (65%), Positives = 264/341 (77%), Gaps = 18/341 (5%)

Query: 65  MVRNKQGIYTQKQNNKVVVLWDLDNKPPRGPPYDAAMSLRRVAERFGEVTDISAYANRHA 124
           MVRNK+GI+  K+  KVVVLWDLDNKPPRGPPY+AA +LR+VAE+ G V +ISAYANRHA
Sbjct: 1   MVRNKEGIFAPKEK-KVVVLWDLDNKPPRGPPYEAATALRKVAEKLGRVVEISAYANRHA 59

Query: 125 FIHLPQWVIQERRERKQFDILERRGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLHERER 184
           FIHLP WV++ERRER+  D +ER+G   P DPYICGVCGRKCKTNLDLKKHFKQLHERER
Sbjct: 60  FIHLPHWVVEERRERRNLDFMERKGEVTPIDPYICGVCGRKCKTNLDLKKHFKQLHERER 119

Query: 185 QKKLNRMKSLKGKKRQKYKERYISGNDKYNEAARSLLKPKVGYGLGSELRRAGVFVKTVR 244
           QKK+NRM+SLKGKKRQK+KERY+SGN+KYNEAARSLL PKVGYGL +ELRRAGV+VKTV 
Sbjct: 120 QKKVNRMRSLKGKKRQKFKERYVSGNEKYNEAARSLLTPKVGYGLEAELRRAGVYVKTVE 179

Query: 245 DKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNRGLGQ 304
           DKPQAADWA+KRQ+QHSM+ G+DW+ LVSDD DF +MLRKAR+A+LGT+VV D +R LG+
Sbjct: 180 DKPQAADWAVKRQIQHSMTRGIDWLVLVSDDKDFSDMLRKAREADLGTLVVSDMDRALGR 239

Query: 305 HADLWVPWIEVENGELTERDLVPRTRRTTTEDFERDGLGLFSLTEFDGVVGFEDETDLDS 364
           HADLWVPW  VE GE+ E+DL+P  R      FE D +G     E   +   EDE     
Sbjct: 240 HADLWVPWSGVEKGEIGEKDLIPGKRPR----FEEDEVGFGGNDELFSLSYDEDEK---- 291

Query: 365 VVNELVAERTEFGGVRISMFSEGEEEEDYWVTEEAGGDYLL 405
              E+  E   FG   +S FS     ED WV +E  GD++L
Sbjct: 292 --AEMTVESDGFGRFNVSAFS-----EDEWVEDE--GDFVL 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796005|ref|XP_002865887.1| hypothetical protein ARALYDRAFT_357440 [Arabidopsis lyrata subsp. lyrata] gi|297311722|gb|EFH42146.1| hypothetical protein ARALYDRAFT_357440 [Arabidopsis lyrata subsp. lyrata]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/346 (65%), Positives = 263/346 (76%), Gaps = 25/346 (7%)

Query: 65  MVRNKQGIYTQKQNNKVVVLWDLDNKPPRGPPYDAAMSLRRVAERFGEVTDISAYANRHA 124
           MVRNK+GI+  K+  KVVVLWDLDNKPPRGPPY+AA +LR+VAE  G V +ISAYANRHA
Sbjct: 1   MVRNKEGIFAPKEK-KVVVLWDLDNKPPRGPPYEAATALRKVAENLGRVVEISAYANRHA 59

Query: 125 FIHLPQWVIQERRERKQFDILERRGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLHERER 184
           FIHLP WV++ERRER+  D +ER+G   P DPYICGVCGRKCKTNLDLKKHFKQLHERER
Sbjct: 60  FIHLPHWVVEERRERRNLDFMERKGEVTPIDPYICGVCGRKCKTNLDLKKHFKQLHERER 119

Query: 185 QKKLNRMKSLKGKKRQKYKERYISGNDKYNEAARSLLKPKVGYGLGSELRRAGVFVKTVR 244
           QKK+NRM+SLKGKKRQK+KERY+S NDKYNEAAR LL PKVGYGL +ELRRAGV+VKTV 
Sbjct: 120 QKKVNRMRSLKGKKRQKFKERYVSRNDKYNEAARRLLTPKVGYGLEAELRRAGVYVKTVE 179

Query: 245 DKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNRGLGQ 304
           DKPQAADWA+KRQ+QHSM+ G+DW+ LVSDD DF +MLRKAR+A+LGT+VV D +R LG+
Sbjct: 180 DKPQAADWAVKRQIQHSMTRGIDWLVLVSDDKDFSDMLRKAREADLGTLVVSDRDRALGR 239

Query: 305 HADLWVPWIEVENGELTERDLVPRTRRTTTEDFERD-----GLGLFSLTEFDGVVGFEDE 359
           HADLWVPW  VE GE+ E DL+P  R    ED E +     G  LFSL+ +D     EDE
Sbjct: 240 HADLWVPWSGVEKGEIGEMDLIPGKRPRFEEDEESEVGFSGGDELFSLS-YD-----EDE 293

Query: 360 TDLDSVVNELVAERTEFGGVRISMFSEGEEEEDYWVTEEAGGDYLL 405
                   E+  E    G   +S FS     ED WV +E  GD+ L
Sbjct: 294 R------AEMTVESDGLGRFNVSAFS-----EDEWVEDE--GDFAL 326

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562259|ref|XP_003549389.1| PREDICTED: uncharacterized protein LOC100787323 [Glycine max]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/326 (65%), Positives = 257/326 (78%), Gaps = 15/326 (4%)

Query: 12  SLKPLVRYNKSDFHFSQSLVLEKLPTHFNTKLALKP---------SKCCIKTSSASASID 62
           SL  L   N   F+    + L  +P    T    KP          +CC   ++ + SI+
Sbjct: 12  SLFLLHNANTIHFNLHSQITLPSIP--LTTITTTKPFPHNRHFPRIQCC-SNNNNNNSIE 68

Query: 63  IDMVRNKQGIYTQKQNNKVVVLWDLDNKPPRGPPYDAAMSLRRVAERFGEVTDISAYANR 122
           IDMV+N QGIY  K + KVVVLWDLDNKPPRGPPYD A+SL+ +A RFG++ D SAYANR
Sbjct: 69  IDMVKNSQGIYAPKAS-KVVVLWDLDNKPPRGPPYDVAISLKTLAARFGDLVDFSAYANR 127

Query: 123 HAFIHLPQWVIQERRERKQFDILERRGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLHER 182
           HAF+HLPQWV+Q+RR+RK  DILER+G+  P +PY CGVCGRKCKT+LDLKKHFKQLH+R
Sbjct: 128 HAFVHLPQWVLQQRRDRKNLDILERKGIITPPEPYTCGVCGRKCKTHLDLKKHFKQLHQR 187

Query: 183 ERQKKLNRMKSLKGKKRQKYKERYISGNDKYNEAARSLLKPKVGYGLGSELRRAGVFVKT 242
           ERQKKLNR+KSLKGKKR ++KER++ GN KY++AAR+L+ PKVGYGL +ELRRAGVFVKT
Sbjct: 188 ERQKKLNRLKSLKGKKRHRFKERFLRGNHKYDDAARTLVVPKVGYGLAAELRRAGVFVKT 247

Query: 243 VRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNRGL 302
           V+DKPQAADWALKRQM HSMS G+DW+FLVSDD+DF EMLR+AR+A+LGTVVVGD +R L
Sbjct: 248 VQDKPQAADWALKRQMVHSMSRGIDWLFLVSDDSDFSEMLRRAREADLGTVVVGDWDRAL 307

Query: 303 GQHADLWVPWIEVENGELTERDLVPR 328
           G+HADLWVPW  VENGE+   DLVP+
Sbjct: 308 GRHADLWVPWSGVENGEVG--DLVPK 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
TAIR|locus:2173038	396	AT5G52010 "AT5G52010" [Arabido	0.904	0.952	0.599	3.6e-121
TAIR|locus:2139119	364	AT4G12240 "AT4G12240" [Arabido	0.585	0.670	0.485	4.8e-55

TAIR|locus:2173038 AT5G52010 "AT5G52010" [Arabidopsis thaliana (taxid:3702)]

 Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
 Identities = 235/392 (59%), Positives = 286/392 (72%)

Query:     1 MKWLCSSLDARSLKPLVRYNKSDFHFSQSLVLEKLPTHFNTKLALKPSKCCIKTSSASAS 60
             M   C+S++    KP + +    F FS S       T F  +   +  + C+K++S+S  
Sbjct:     1 MSLFCNSIETLYPKPFLSHKSHFFTFSNSKFQNPKFTSFPLRHQWR-IESCLKSASSS-- 57

Query:    61 IDIDMVRNKQGIYTQKQNNKVVVLWDLDNKPPRGPPYDAAMSLRRVAERFGEVTDISAYA 120
              +IDMVRNK+GI+  K+  KVVVLWDLDNKPPRGPPY+AA +LR+VAE+ G V +ISAYA
Sbjct:    58 -EIDMVRNKEGIFAPKEK-KVVVLWDLDNKPPRGPPYEAATALRKVAEKLGRVVEISAYA 115

Query:   121 NRHAFIHLPQWVIQERRERKQFDILERRGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLH 180
             NRHAFIHLP WV++ERRER+  D +ER+G   P DPYICGVCGRKCKTNLDLKKHFKQLH
Sbjct:   116 NRHAFIHLPHWVVEERRERRNLDFMERKGEVTPIDPYICGVCGRKCKTNLDLKKHFKQLH 175

Query:   181 ERERQKKLNRMKSLKGKKRQKYKERYISGNDKYNEAARSLLKPKVGYGLGSELRRAGVFV 240
             ERERQKK+NRM+SLKGKKRQK+KERY+SGN+KYNEAARSLL PKVGYGL +ELRRAGV+V
Sbjct:   176 ERERQKKVNRMRSLKGKKRQKFKERYVSGNEKYNEAARSLLTPKVGYGLEAELRRAGVYV 235

Query:   241 KTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNR 300
             KTV DKPQAADWA+KRQ+QHSM+ G+DW+ LVSDD DF +MLRKAR+A+LGT+VV D +R
Sbjct:   236 KTVEDKPQAADWAVKRQIQHSMTRGIDWLVLVSDDKDFSDMLRKAREADLGTLVVSDMDR 295

Query:   301 GLGQHADLWVPWIEVENGELTERDLVPXXXXXXXEDFERDGLGLFSLTEFDGVVGFEDET 360
              LG+HADLWVPW  VE GE+ E+DL+P         FE D +G     E   +   EDE 
Sbjct:   296 ALGRHADLWVPWSGVEKGEIGEKDLIPGKRPR----FEEDEVGFGGNDELFSLSYDEDEK 351

Query:   361 DLDSVVNELVAERTEFGGVRISMFSEGEEEED 392
                    E+  E   FG   +S FSE E  ED
Sbjct:   352 A------EMTVESDGFGRFNVSAFSEDEWVED 377

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2139119 AT4G12240 "AT4G12240" [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 120/247 (48%), Positives = 160/247 (64%)

Query:    76 KQNNKVVVLWDLDNKPPRG-PPYDAAMSLRRVAERFGEVTDISAYANRHAFIHLPQWVIQ 134
             K   +V V WDLDNKPP   PPYDAA+ LR  A  FG V  + AYANRHAF ++P  V +
Sbjct:    35 KPKIRVGVWWDLDNKPPASFPPYDAAVKLRTAASSFGTVKLMMAYANRHAFSYVPLEVRE 94

Query:   135 ERRERKQFDILERRGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSL 194
             +R++RK  + LE +G+  P +PY CGVC R+  TN  L  HFKQ+HE E QK++ +++S 
Sbjct:    95 QRKDRKLLNKLENKGLVKPPEPYFCGVCDRRFYTNEKLINHFKQIHETENQKRMRQIESS 154

Query:   195 KGKKRQKYKERYISGNDKYNEAARSLLKPKVGYGLGSELRRAGVFVKTVRDKPQAADWAL 254
             KG +R +   +Y    +KY  AAR++L PK GYGL  EL+RAG +VK V DKP AAD AL
Sbjct:   155 KGHRRVRLVAKYSMKIEKYKRAARNVLTPKEGYGLADELKRAGFWVKMVSDKPDAADKAL 214

Query:   255 KRQMQHSMSSG-VDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNRG-LGQHADLWVPW 312
             K  +   M    V+ + LVSDD+DF  +L +A++  L TVV+GDSN G L + AD+   W
Sbjct:   215 KEHLVEVMDKREVECVVLVSDDSDFAGILWEAKERCLRTVVIGDSNEGALKRVADVAYSW 274

Query:   313 IEVENGE 319
              EV  G+
Sbjct:   275 KEVTMGK 281


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      417       394   0.00095  117 3  11 22  0.40    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  268 KB (2141 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  39.27u 0.10s 39.37t   Elapsed:  00:00:02
  Total cpu time:  39.27u 0.11s 39.38t   Elapsed:  00:00:02
  Start:  Mon May 20 23:44:50 2013   End:  Mon May 20 23:44:52 2013

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014863001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (489 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	417
cd06167	151	cd06167, LabA_like, LabA_like proteins	5e-07

>gnl|CDD|199895 cd06167, LabA_like, LabA_like proteins

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 13/150 (8%)

Query: 171 DLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKERYISGNDKYNEAARSLLKPKVGYGLG 230
           D +  +  L      K+L+    L+  +   Y +  +     Y     +   P       
Sbjct: 6   DGENLYIGLKRLLGLKRLDLEALLE--RLLSYADGRLVLARAY--YNTARPDPSSPDRFQ 61

Query: 231 SELRRAGVFVKTV-----RDKPQAADWALKRQMQHSM-SSGVDWMFLVSDDNDFKEMLRK 284
             LRR G  V  V     + + +  D AL            +D + LVS D+DF  +L +
Sbjct: 62  EALRRLGFEVIRVPRLRGKGEEKGVDVALALDALELAYERRIDTIVLVSGDSDFVPLLER 121

Query: 285 ARDANLGTVVVGDS---NRGLGQHADLWVP 311
            R+     +VVG     +  L   AD ++ 
Sbjct: 122 LRERGKRVIVVGFRRSASSALKNAADEFID 151

A well conserved group of domains found in all three kingdoms of life, with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression. Another member is the N-terminal domain of limkain b1, a human autoantigen associated with cytoplasmic vesicles. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls in the LabA_like family. LabA_like domains exhibit some similarity to the NYN domain, a distant relative of the PIN-domain nucleases. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	417
cd06167	149	LabA_like LabA_like proteins. A well conserved gro	98.68
PF01936	146	NYN: NYN domain; InterPro: IPR021139 This highly c	98.51
TIGR00288	160	conserved hypothetical protein TIGR00288. This fam	98.45
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.37
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.29
COG1432	181	Uncharacterized conserved protein [Function unknow	97.15
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	95.96
smart00355	26	ZnF_C2H2 zinc finger.	95.9
PHA00616	44	hypothetical protein	95.67
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.32
PHA02768	55	hypothetical protein; Provisional	94.87
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	94.47
PHA00732	79	hypothetical protein	94.22
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.14
cd05013	139	SIS_RpiR RpiR-like protein. RpiR contains a SIS (S	93.81
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	93.63
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	93.4
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	93.39
cd01542	259	PBP1_TreR_like Ligand-binding domain of DNA transc	92.06
PF13407	257	Peripla_BP_4: Periplasmic binding protein domain;	91.93
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	91.77
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	91.46
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	91.35
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	91.29
PRK15482	285	transcriptional regulator MurR; Provisional	90.89
cd05014	128	SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5	90.82
cd06281	269	PBP1_LacI_like_5 Ligand-binding domain of uncharac	90.81
PHA00733	128	hypothetical protein	90.54
cd06282	266	PBP1_GntR_like_2 Ligand-binding domain of putative	90.53
cd06305	273	PBP1_methylthioribose_binding_like Methylthioribos	90.11
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	90.09
COG5189	423	SFP1 Putative transcriptional repressor regulating	90.0
cd06312	271	PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-bi	89.79
PRK14101	638	bifunctional glucokinase/RpiR family transcription	89.62
cd06318	282	PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-bi	89.59
cd01545	270	PBP1_SalR Ligand-binding domain of DNA transcripti	89.38
PRK15408	336	autoinducer 2-binding protein lsrB; Provisional	88.6
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	88.56
TIGR02634	302	xylF D-xylose ABC transporter, substrate-binding p	88.29
PRK11557	278	putative DNA-binding transcriptional regulator; Pr	88.14
cd06313	272	PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-bi	88.11
cd06306	268	PBP1_TorT-like TorT-like proteins, a periplasmic b	87.98
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	87.83
cd06299	265	PBP1_LacI_like_13 Ligand-binding domain of DNA-bin	87.63
cd06324	305	PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-b	87.57
PHA00733	128	hypothetical protein	87.4
cd01540	289	PBP1_arabinose_binding Periplasmic L-arabinose-bin	87.26
cd05005	179	SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI	87.15
cd01541	273	PBP1_AraR Ligand-binding domain of DNA transcripti	87.08
cd06317	275	PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-bi	86.89
KOG3576	267	consensus Ovo and related transcription factors [T	86.36
cd06302	298	PBP1_LsrB_Quorum_Sensing Periplasmic binding domai	86.34
TIGR03127	179	RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of	86.23
cd06270	268	PBP1_GalS_like Ligand binding domain of DNA transc	85.89
TIGR02637	302	RhaS rhamnose ABC transporter, rhamnose-binding pr	85.83
cd06320	275	PBP1_allose_binding Periplasmic allose-binding dom	85.52
PRK10653	295	D-ribose transporter subunit RbsB; Provisional	85.33
cd06303	280	PBP1_LuxPQ_Quorum_Sensing Periplasmic binding prot	85.29
cd06308	270	PBP1_sensor_kinase_like Periplasmic binding domain	85.24
cd06289	268	PBP1_MalI_like Ligand-binding domain of MalI, a tr	85.23
cd06323	268	PBP1_ribose_binding Periplasmic sugar-binding doma	85.08
cd06319	277	PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-b	84.77
cd06301	272	PBP1_rhizopine_binding_like Periplasmic binding pr	84.7
cd06295	275	PBP1_CelR Ligand binding domain of a transcription	84.63
cd01538	288	PBP1_ABC_xylose_binding Periplasmic xylose-binding	84.59
cd06322	267	PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-b	84.48
PF04423	54	Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IP	84.42
cd06316	294	PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-bi	84.32
cd06314	271	PBP1_tmGBP Periplasmic sugar-binding domain of The	84.08
PF01380	131	SIS: SIS domain SIS domain web page.; InterPro: IP	83.83
cd06342	334	PBP1_ABC_LIVBP_like Type I periplasmic ligand-bind	83.6
PRK13937	188	phosphoheptose isomerase; Provisional	83.5
cd06309	273	PBP1_YtfQ_like Periplasmic binding domain of ABC-t	83.29
cd06315	280	PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-bi	83.27
cd06347	334	PBP1_ABC_ligand_binding_like_12 Type I periplasmic	83.16
cd01539	303	PBP1_GGBP Periplasmic glucose/galactose-binding pr	83.06
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	83.01
cd06311	274	PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-bi	82.91
PRK11337	292	DNA-binding transcriptional repressor RpiR; Provis	82.8
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	82.78
cd05008	126	SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repea	82.7
PF04123	344	DUF373: Domain of unknown function (DUF373); Inter	82.52
PRK10014	342	DNA-binding transcriptional repressor MalI; Provis	82.44
PRK10936	343	TMAO reductase system periplasmic protein TorT; Pr	82.19
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	82.14
cd06278	266	PBP1_LacI_like_2 Ligand-binding domain of uncharac	81.8
cd06294	270	PBP1_ycjW_transcription_regulator_like Ligand-bind	81.5
TIGR00441	154	gmhA phosphoheptose isomerase. Involved in lipopol	81.47
cd06267	264	PBP1_LacI_sugar_binding_like Ligand binding domain	81.43
cd06296	270	PBP1_CatR_like Ligand-binding domain of a LacI-lik	81.27
COG1737	281	RpiR Transcriptional regulators [Transcription]	80.71
cd06292	273	PBP1_LacI_like_10 Ligand-binding domain of unchara	80.39
cd06268	298	PBP1_ABC_transporter_LIVBP_like Periplasmic bindin	80.26
cd01536	267	PBP1_ABC_sugar_binding_like Periplasmic sugar-bind	80.2

>cd06167 LabA_like LabA_like proteins

Probab=98.68  E-value=6.2e-08  Score=81.78  Aligned_cols=81  Identities=28%  Similarity=0.318  Sum_probs=69.3

Q ss_pred             CCchHHHHhcceEEEEeCC-----CchhHHHHHHHHHHHhh-hCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCCC-
Q 014872          227 YGLGSELRRAGVFVKTVRD-----KPQAADWALKRQMQHSM-SSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSN-  299 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~d-----KPqAAD~ALkrhm~~~m-~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~~-  299 (417)
                      -.+..+|++.||.|..++.     .+.++|.+|.-.|...+ .++++++||||.|+||+++++.+|++|.+++|+|-.. 
T Consensus        55 ~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~~~  134 (149)
T cd06167          55 RGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDSDFVPLVERLRELGKRVIVVGFEAK  134 (149)
T ss_pred             HHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCccHHHHHHHHHHcCCEEEEEccCcc
Confidence            3467889999999999984     56799999987766555 4689999999999999999999999999999999852 


Q ss_pred             --Cccccccc
Q 014872          300 --RGLGQHAD  307 (417)
Q Consensus       300 --~~L~R~AD  307 (417)
                        ..|...||
T Consensus       135 ~s~~L~~~~d  144 (149)
T cd06167         135 TSRELRKAAD  144 (149)
T ss_pred             ChHHHHHhCC
Confidence              47788887

A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.

>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function

Probab=98.51  E-value=2e-07  Score=77.14  Aligned_cols=81  Identities=31%  Similarity=0.417  Sum_probs=53.3

Q ss_pred             HHHHhcceEEEEeCC------CchhHHHHHHHHHHHhhh-CCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcC--C-CC
Q 014872          231 SELRRAGVFVKTVRD------KPQAADWALKRQMQHSMS-SGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGD--S-NR  300 (417)
Q Consensus       231 ~ELkRAGV~VrtV~d------KPqAAD~ALkrhm~~~m~-rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd--~-~~  300 (417)
                      ..|++.|+.|+.++-      ...++|.+|.-.|...+. ..++.+||||.|+||+++++.+|++|.+++|+|.  . ..
T Consensus        54 ~~L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~v~~l~~~g~~V~v~~~~~~~s~  133 (146)
T PF01936_consen   54 EALQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAYENPPDTIVLVSGDSDFAPLVRKLRERGKRVIVVGAEDSASE  133 (146)
T ss_dssp             HHHHHHT-EEEE------S---S---HHHHHHHHHHHG--GG-SEEEEE---GGGHHHHHHHHHH--EEEEEE-GGGS-H
T ss_pred             HHHHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhhccCCCEEEEEECcHHHHHHHHHHHHcCCEEEEEEeCCCCCH
Confidence            346788888887755      567999999999877774 4479999999999999999999999999999993  1 24


Q ss_pred             ccccccccccc
Q 014872          301 GLGQHADLWVP  311 (417)
Q Consensus       301 ~L~R~ADl~fS  311 (417)
                      .|.+.||-.++
T Consensus       134 ~L~~~ad~f~~  144 (146)
T PF01936_consen  134 ALRSAADEFIS  144 (146)
T ss_dssp             HHHHHSSEEEE
T ss_pred             HHHHhcCEEEe
Confidence            78888885543

However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.

>TIGR00288 conserved hypothetical protein TIGR00288

Probab=98.45  E-value=2.8e-06  Score=77.55  Aligned_cols=77  Identities=22%  Similarity=0.321  Sum_probs=59.4

Q ss_pred             HHHhcceEEEEeCCCchhHHHHHHHHHHHhh-hCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC---CCccccccc
Q 014872          232 ELRRAGVFVKTVRDKPQAADWALKRQMQHSM-SSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS---NRGLGQHAD  307 (417)
Q Consensus       232 ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m-~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~---~~~L~R~AD  307 (417)
                      .|++.||.+..+.+   +.|++|-=-+..++ +..++++||||.|+||+.++..+|++|.+++|||--   ...|.+.||
T Consensus        74 ~l~~~Gf~pv~~kG---~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd  150 (160)
T TIGR00288        74 AVVNQGFEPIIVAG---DVDVRMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKENGKETIVIGAEPGFSTALQNSAD  150 (160)
T ss_pred             HHHHCCceEEEecC---cccHHHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeCCCCChHHHHHhcC
Confidence            56666666655433   88998865544444 578999999999999999999999999999999942   237788887


Q ss_pred             cccc
Q 014872          308 LWVP  311 (417)
Q Consensus       308 l~fS  311 (417)
                      -++.
T Consensus       151 ~FI~  154 (160)
T TIGR00288       151 IAII  154 (160)
T ss_pred             eEEe
Confidence            6543

This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.37  E-value=0.00011  Score=45.82  Aligned_cols=23  Identities=35%  Similarity=0.999  Sum_probs=22.0

Q ss_pred             eecccCCCCCCChHHHHHHHHHhh
Q 014872          157 YICGVCGRKCKTNLDLKKHFKQLH  180 (417)
Q Consensus       157 Y~C~VCGRkf~T~~kL~kHFKQLH  180 (417)
                      |.|+.||+.|++...|++|.+. |
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~-H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR-H   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH-H
T ss_pred             CCCCCCCCccCCHHHHHHHHhH-C
Confidence            7899999999999999999998 6

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.29  E-value=0.00018  Score=43.75  Aligned_cols=24  Identities=25%  Similarity=0.895  Sum_probs=20.9

Q ss_pred             eecccCCCCCCChHHHHHHHHHhh
Q 014872          157 YICGVCGRKCKTNLDLKKHFKQLH  180 (417)
Q Consensus       157 Y~C~VCGRkf~T~~kL~kHFKQLH  180 (417)
                      |.|++||..|++...|.+|+++-|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999999877

...

>COG1432 Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.00052  Score=62.61  Aligned_cols=51  Identities=29%  Similarity=0.381  Sum_probs=44.7

Q ss_pred             hhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCCC---Cccccccccccch
Q 014872          262 MSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSN---RGLGQHADLWVPW  312 (417)
Q Consensus       262 m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~~---~~L~R~ADl~fSW  312 (417)
                      .+-.++++||||.|.||..+++.|+++|.+|+|+|-..   .+|...||-...=
T Consensus       107 ~~~~~D~ivl~SgD~DF~p~v~~~~~~G~rv~v~~~~~~~s~~L~~~aD~~i~L  160 (181)
T COG1432         107 DKKNVDTIVLFSGDGDFIPLVEAARDKGKRVEVAGIEPMTSSDLRNAADYYIDL  160 (181)
T ss_pred             cccCCCEEEEEcCCccHHHHHHHHHHcCCEEEEEecCCcCHHHHHHhhcceEEc
Confidence            45689999999999999999999999999999999976   3889999866543

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=95.96  E-value=0.0035  Score=40.35  Aligned_cols=24  Identities=25%  Similarity=0.661  Sum_probs=22.0

Q ss_pred             CeecccCCCCCCChHHHHHHHHHh
Q 014872          156 PYICGVCGRKCKTNLDLKKHFKQL  179 (417)
Q Consensus       156 PY~C~VCGRkf~T~~kL~kHFKQL  179 (417)
                      ||.|.+|++.|.+...|..|.+.=
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            799999999999999999998653

>smart00355 ZnF_C2H2 zinc finger

Probab=95.90  E-value=0.0061  Score=36.94  Aligned_cols=24  Identities=38%  Similarity=0.815  Sum_probs=21.9

Q ss_pred             eecccCCCCCCChHHHHHHHHHhhh
Q 014872          157 YICGVCGRKCKTNLDLKKHFKQLHE  181 (417)
Q Consensus       157 Y~C~VCGRkf~T~~kL~kHFKQLHE  181 (417)
                      |.|..||+.|.+...|..|.+ .|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~-~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR-THX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH-Hhc
Confidence            689999999999999999988 764

>PHA00616 hypothetical protein

Probab=95.67  E-value=0.0045  Score=46.59  Aligned_cols=27  Identities=22%  Similarity=0.550  Sum_probs=25.1

Q ss_pred             CeecccCCCCCCChHHHHHHHHHhhhh
Q 014872          156 PYICGVCGRKCKTNLDLKKHFKQLHER  182 (417)
Q Consensus       156 PY~C~VCGRkf~T~~kL~kHFKQLHER  182 (417)
                      ||.|+-||+.|.....|.+|.++-|-.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~   27 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQ   27 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCC
Confidence            799999999999999999999988865

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.32  E-value=0.011  Score=39.01  Aligned_cols=21  Identities=43%  Similarity=0.661  Sum_probs=18.5

Q ss_pred             eecccCCCCCCChHHHHHHHHH
Q 014872          157 YICGVCGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       157 Y~C~VCGRkf~T~~kL~kHFKQ  178 (417)
                      ..|+.|||+| ..+.|.+|.++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4699999999 88999999864

>PHA02768 hypothetical protein; Provisional

Probab=94.87  E-value=0.015  Score=45.62  Aligned_cols=25  Identities=24%  Similarity=0.654  Sum_probs=23.2

Q ss_pred             CeecccCCCCCCChHHHHHHHHHhhh
Q 014872          156 PYICGVCGRKCKTNLDLKKHFKQLHE  181 (417)
Q Consensus       156 PY~C~VCGRkf~T~~kL~kHFKQLHE  181 (417)
                      .|.|+.||+.|.....|.+|.|. |.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~-H~   29 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRK-HN   29 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHh-cC
Confidence            48999999999999999999998 66

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.47  E-value=0.027  Score=44.28  Aligned_cols=30  Identities=23%  Similarity=0.640  Sum_probs=22.5

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHER  182 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHER  182 (417)
                      .+.|..||+||+.++..-+|.+|.+--|.-
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~   50 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFK   50 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcc
Confidence            457999999999999999999999988864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PHA00732 hypothetical protein

Probab=94.22  E-value=0.026  Score=46.26  Aligned_cols=27  Identities=30%  Similarity=0.555  Sum_probs=24.5

Q ss_pred             CeecccCCCCCCChHHHHHHHHHhhhh
Q 014872          156 PYICGVCGRKCKTNLDLKKHFKQLHER  182 (417)
Q Consensus       156 PY~C~VCGRkf~T~~kL~kHFKQLHER  182 (417)
                      ||.|+.||+.|.+...|.+|.+..|..
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~   27 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL   27 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC
Confidence            799999999999999999999877764

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.14  E-value=0.051  Score=36.46  Aligned_cols=33  Identities=18%  Similarity=0.500  Sum_probs=28.3

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhhHHHH
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERERQKK  187 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KR  187 (417)
                      .+|.|.+|+..|.....+..|++.-.-+++.++
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            479999999999999999999998776666554

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>cd05013 SIS_RpiR RpiR-like protein

Probab=93.81  E-value=0.33  Score=39.22  Aligned_cols=76  Identities=22%  Similarity=0.232  Sum_probs=53.1

Q ss_pred             chHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCC---cchHHHHHHHHHcCCcEEEEcCC-CCcccc
Q 014872          229 LGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDD---NDFKEMLRKARDANLGTVVVGDS-NRGLGQ  304 (417)
Q Consensus       229 LA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDD---sdF~~~Lr~AR~~~v~TVVVGd~-~~~L~R  304 (417)
                      ++.-|++.|..+.++++-   .   ...+....+.. -+|++++|-.   .+..++++.|+++|.++|+|.+. +..+.+
T Consensus        31 ~~~~l~~~~~~~~~~~~~---~---~~~~~~~~~~~-~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~  103 (139)
T cd05013          31 LAYKLLRLGKPVVLLSDP---H---LQLMSAANLTP-GDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAK  103 (139)
T ss_pred             HHHHHHHcCCceEEecCH---H---HHHHHHHcCCC-CCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHH
Confidence            566788889888888542   1   11111112333 4788888854   44778899999999999999995 467888


Q ss_pred             ccccccc
Q 014872          305 HADLWVP  311 (417)
Q Consensus       305 ~ADl~fS  311 (417)
                      .+|..+.
T Consensus       104 ~~d~~i~  110 (139)
T cd05013         104 LADIVLL  110 (139)
T ss_pred             hcCEEEE
Confidence            8987664

RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=93.63  E-value=0.047  Score=40.95  Aligned_cols=29  Identities=24%  Similarity=0.565  Sum_probs=24.3

Q ss_pred             CeecccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          156 PYICGVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       156 PY~C~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      -|.||+||+ -.+...|..|+.+-|..++.
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~   30 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESK   30 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCC
Confidence            488999999 46678999999999998754

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=93.40  E-value=0.044  Score=34.59  Aligned_cols=22  Identities=18%  Similarity=0.789  Sum_probs=20.4

Q ss_pred             eecccCCCCCCChHHHHHHHHH
Q 014872          157 YICGVCGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       157 Y~C~VCGRkf~T~~kL~kHFKQ  178 (417)
                      |.|.+|++.|.+...|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            6899999999999999999864

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=93.39  E-value=0.031  Score=36.73  Aligned_cols=16  Identities=31%  Similarity=0.887  Sum_probs=13.9

Q ss_pred             CCCCeecccCCCCCCC
Q 014872          153 PNDPYICGVCGRKCKT  168 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T  168 (417)
                      .++||.|+.||++|.+
T Consensus        11 ~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen   11 GEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             SSSSEEESSSSEEESS
T ss_pred             CCCCCCCCCCcCeeCc
Confidence            4589999999999975

...

>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=92.06  E-value=0.68  Score=40.95  Aligned_cols=68  Identities=18%  Similarity=0.171  Sum_probs=51.8

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd  297 (417)
                      .|+..++++.|+.+.........+  ..+..++.+.+.+++.||+++.+.+ ..+++.++++++..|++|.
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~~--~~~~~i~~l~~~~~dgii~~~~~~~-~~~~~~~~~~~ipvv~~~~   86 (259)
T cd01542          19 KGILAALYENGYQMLLMNTNFSIE--KEIEALELLARQKVDGIILLATTIT-DEHREAIKKLNVPVVVVGQ   86 (259)
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCHH--HHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHhcCCCCEEEEec
Confidence            577888999999998775544333  2345556667899999999976543 5788888999999999986

Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh

>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A

Probab=91.93  E-value=0.86  Score=40.63  Aligned_cols=99  Identities=21%  Similarity=0.292  Sum_probs=69.9

Q ss_pred             CchHHHHhcceEEEEe-CCCchhHHHHHHHHHHHhhhCCcceEEEEeCC-cchHHHHHHHHHcCCcEEEEcCCCCccccc
Q 014872          228 GLGSELRRAGVFVKTV-RDKPQAADWALKRQMQHSMSSGVDWMFLVSDD-NDFKEMLRKARDANLGTVVVGDSNRGLGQH  305 (417)
Q Consensus       228 GLA~ELkRAGV~VrtV-~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDD-sdF~~~Lr~AR~~~v~TVVVGd~~~~L~R~  305 (417)
                      |+...++..|+.+.++ ....+.+  .....++++++.|++.|++..-+ ....++|+.|+++|+..|.+... ......
T Consensus        19 g~~~~a~~~g~~~~~~~~~~~d~~--~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~-~~~~~~   95 (257)
T PF13407_consen   19 GAKAAAKELGYEVEIVFDAQNDPE--EQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD-EAPDSP   95 (257)
T ss_dssp             HHHHHHHHHTCEEEEEEESTTTHH--HHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST-HHTTST
T ss_pred             HHHHHHHHcCCEEEEeCCCCCCHH--HHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc-cccccc
Confidence            6678889999999996 4444443  45677888999999999988554 57889999999999988888775 112333


Q ss_pred             cccccchhhhhcCcccccccccCC
Q 014872          306 ADLWVPWIEVENGELTERDLVPRT  329 (417)
Q Consensus       306 ADl~fSW~eV~~Gk~~~~~~~~~~  329 (417)
                      -+.++.+..-+.|+..-+.+....
T Consensus        96 ~~~~v~~d~~~~G~~~a~~l~~~~  119 (257)
T PF13407_consen   96 RAAYVGTDNYEAGKLAAEYLAEKL  119 (257)
T ss_dssp             SSEEEEE-HHHHHHHHHHHHHHHH
T ss_pred             ceeeeeccHHHHHHHHHHHHHHHh
Confidence            334555666667776655554433

...

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=91.77  E-value=0.058  Score=53.82  Aligned_cols=52  Identities=19%  Similarity=0.359  Sum_probs=43.7

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhhhhccccchhHHHHHHhhc
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKERYIS  208 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnrL~S~KGkrR~rl~~~~a~  208 (417)
                      -|..|++||+.|...==|+.|+|+ |+=|+.=.+.++..+ .+-|-+|++++--
T Consensus       186 l~c~C~iCGKaFSRPWLLQGHiRT-HTGEKPF~C~hC~kA-FADRSNLRAHmQT  237 (279)
T KOG2462|consen  186 LPCECGICGKAFSRPWLLQGHIRT-HTGEKPFSCPHCGKA-FADRSNLRAHMQT  237 (279)
T ss_pred             CCcccccccccccchHHhhccccc-ccCCCCccCCcccch-hcchHHHHHHHHh
Confidence            578899999999888888889886 888888888888777 7888888888765

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=91.46  E-value=0.049  Score=35.62  Aligned_cols=22  Identities=27%  Similarity=0.721  Sum_probs=20.4

Q ss_pred             eecccCCCCCCChHHHHHHHHH
Q 014872          157 YICGVCGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       157 Y~C~VCGRkf~T~~kL~kHFKQ  178 (417)
                      |.|.+|++.|.+...|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            7899999999999999999875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=91.35  E-value=0.16  Score=39.61  Aligned_cols=26  Identities=19%  Similarity=0.654  Sum_probs=22.8

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLH  180 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLH  180 (417)
                      .++.|.+|+..|++...|..|++.-|
T Consensus        49 ~~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen   49 ESFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             SSEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             CCCCCCccCCCCcCHHHHHHHHcCcc
Confidence            37999999999999999999999864

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=91.29  E-value=0.18  Score=31.86  Aligned_cols=24  Identities=33%  Similarity=0.701  Sum_probs=19.7

Q ss_pred             eecccCCCCCCChHHHHHHHHHhhh
Q 014872          157 YICGVCGRKCKTNLDLKKHFKQLHE  181 (417)
Q Consensus       157 Y~C~VCGRkf~T~~kL~kHFKQLHE  181 (417)
                      |.|+.|..... ...|.+|.+..|.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            79999999888 9999999998873

>PRK15482 transcriptional regulator MurR; Provisional

Probab=90.89  E-value=0.79  Score=43.54  Aligned_cols=94  Identities=16%  Similarity=0.211  Sum_probs=65.0

Q ss_pred             hHHHHHHHhhcCCCC----CCC--------chHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCC---
Q 014872          211 DKYNEAARSLLKPKV----GYG--------LGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDD---  275 (417)
Q Consensus       211 ~KY~~AArevL~PKv----GYG--------LA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDD---  275 (417)
                      ..+++|+..+...+.    |.|        ++.-|.+.|..|....|...      ...+...+..+ |+++++|-.   
T Consensus       123 ~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~------~~~~~~~~~~~-Dv~i~iS~sg~t  195 (285)
T PRK15482        123 ARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHV------QATVSQALKKG-DVQIAISYSGSK  195 (285)
T ss_pred             HHHHHHHHHHHhCCeeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhH------HHHHHhcCCCC-CEEEEEeCCCCC
Confidence            566677766655432    332        34456688999988754322      12222234445 899999955   


Q ss_pred             cchHHHHHHHHHcCCcEEEEcCCC-Cccccccccccc
Q 014872          276 NDFKEMLRKARDANLGTVVVGDSN-RGLGQHADLWVP  311 (417)
Q Consensus       276 sdF~~~Lr~AR~~~v~TVVVGd~~-~~L~R~ADl~fS  311 (417)
                      .+...+++.|+++|+++|.|.+.. +.|.+.||.-|.
T Consensus       196 ~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~  232 (285)
T PRK15482        196 KEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLD  232 (285)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEE
Confidence            677788999999999999999964 689999998874

>cd05014 SIS_Kpsf KpsF-like protein

Probab=90.82  E-value=0.43  Score=39.22  Aligned_cols=77  Identities=13%  Similarity=0.236  Sum_probs=54.4

Q ss_pred             chHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCC---cchHHHHHHHHHcCCcEEEEcCC-CCcccc
Q 014872          229 LGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDD---NDFKEMLRKARDANLGTVVVGDS-NRGLGQ  304 (417)
Q Consensus       229 LA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDD---sdF~~~Lr~AR~~~v~TVVVGd~-~~~L~R  304 (417)
                      ++..|.+.|..+....+. .    .+..+. ..+ .--++++++|-.   .+...+++.||++|+++|++.+. ++.|.+
T Consensus        18 ~~~~l~~~g~~~~~~~~~-~----~~~~~~-~~~-~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~   90 (128)
T cd05014          18 IAATLSSTGTPAFFLHPT-E----ALHGDL-GMV-TPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAK   90 (128)
T ss_pred             HHHHhhcCCCceEEcccc-h----hhcccc-CcC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhh
Confidence            445567778888877432 1    111110 112 234788889854   78899999999999999999996 478999


Q ss_pred             ccccccch
Q 014872          305 HADLWVPW  312 (417)
Q Consensus       305 ~ADl~fSW  312 (417)
                      .||..+..
T Consensus        91 ~ad~~l~~   98 (128)
T cd05014          91 LSDVVLDL   98 (128)
T ss_pred             hCCEEEEC
Confidence            99988876

KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.

>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=90.81  E-value=1.1  Score=40.28  Aligned_cols=70  Identities=14%  Similarity=0.154  Sum_probs=51.7

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.|-.....-++.  ...++++.+...+++.+++++.+.+-..+++.++++++..|+++..
T Consensus        19 ~~i~~~a~~~g~~~~~~~~~~~~~--~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~ipvV~i~~~   88 (269)
T cd06281          19 SGAEDRLRAAGYSLLIANSLNDPE--RELEILRSFEQRRMDGIIIAPGDERDPELVDALASLDLPIVLLDRD   88 (269)
T ss_pred             HHHHHHHHHcCCEEEEEeCCCChH--HHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHhCCCCEEEEecc
Confidence            467888999999987663322221  2344555667789999999987655567889999999999999863

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>PHA00733 hypothetical protein

Probab=90.54  E-value=0.19  Score=44.13  Aligned_cols=26  Identities=23%  Similarity=0.543  Sum_probs=21.4

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLH  180 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLH  180 (417)
                      .||.|++||+.|.....|.+|..+-|
T Consensus        98 ~~~~C~~CgK~F~~~~sL~~H~~~~h  123 (128)
T PHA00733         98 HSKVCPVCGKEFRNTDSTLDHVCKKH  123 (128)
T ss_pred             cCccCCCCCCccCCHHHHHHHHHHhc
Confidence            35888888888888888888888777

>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=90.53  E-value=1.4  Score=38.95  Aligned_cols=71  Identities=17%  Similarity=0.139  Sum_probs=52.1

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSN  299 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~~  299 (417)
                      .|+..+++..|+.|.......+..+  ....+..+.+.+++.||+.+.+.+..++++.++++|+..|+++...
T Consensus        19 ~~i~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~~   89 (266)
T cd06282          19 QGIQEEARAAGYSLLLATTDYDAER--EADAVETLLRQRVDGLILTVADAATSPALDLLDAERVPYVLAYNDP   89 (266)
T ss_pred             HHHHHHHHHCCCEEEEeeCCCCHHH--HHHHHHHHHhcCCCEEEEecCCCCchHHHHHHhhCCCCEEEEeccC
Confidence            3677788999999988755433321  2234455677899999998776655668999999999999997643

This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding

>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=90.11  E-value=1.5  Score=39.05  Aligned_cols=70  Identities=17%  Similarity=0.225  Sum_probs=51.9

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+..+....+..  .-...+..++..+++.||+.+.++. ..++++.++++|+..|+++..
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~~--~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~~~~   89 (273)
T cd06305          19 AGTKAEAEALGGDLRVYDAGGDDA--KQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAFDVD   89 (273)
T ss_pred             HHHHHHHHHcCCEEEEECCCCCHH--HHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHHcCCCEEEecCC
Confidence            467888999999998875433332  1234455567789999999876544 578899999999999988763

Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=90.09  E-value=0.051  Score=60.88  Aligned_cols=37  Identities=32%  Similarity=0.695  Sum_probs=25.2

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLN  189 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLn  189 (417)
                      -+.||.|.|||++|.|.-.|+-||-.=||.+.-+-||
T Consensus       378 GERPfqCnvCG~~FSTkGNLKvH~~rH~e~~p~~~m~  414 (958)
T KOG1074|consen  378 GERPFQCNVCGNRFSTKGNLKVHFQRHREKYPHVQMN  414 (958)
T ss_pred             CCCCeeecccccccccccceeeeeeeccccCCccccC
Confidence            3567777777777777777777776666666444444

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=90.00  E-value=0.078  Score=54.50  Aligned_cols=34  Identities=32%  Similarity=0.541  Sum_probs=27.8

Q ss_pred             ccCccCCCCCeecccCCCCCCChHHHHHHHHHhh
Q 014872          147 RRGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLH  180 (417)
Q Consensus       147 ~~G~v~p~~PY~C~VCGRkf~T~~kL~kHFKQLH  180 (417)
                      .++.+..++||+|.|||+|.+..--|+-|.+--|
T Consensus       389 ~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~Hsh  422 (423)
T COG5189         389 MNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKHSH  422 (423)
T ss_pred             cccccccCCceeccccchhhccCccceecccccC
Confidence            4556667899999999999999999988876443

>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=89.79  E-value=1.5  Score=39.59  Aligned_cols=97  Identities=19%  Similarity=0.254  Sum_probs=63.4

Q ss_pred             CCchHHHHhcceEEEEeCCCc-hhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcCCCCc---
Q 014872          227 YGLGSELRRAGVFVKTVRDKP-QAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGDSNRG---  301 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKP-qAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd~~~~---  301 (417)
                      .|+..+++..|+.|.+..... +..  .....+..+.+.+++-||+++-+.+ ..++++.++++|+..|+++.....   
T Consensus        20 ~g~~~~~~~~g~~v~~~~~~~~~~~--~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~~~~~~~   97 (271)
T cd06312          20 NGAEDAAKDLGVDVEYRGPETFDVA--DMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAVAAGIPVISFNAGDPKYKE   97 (271)
T ss_pred             HHHHHHHHHhCCEEEEECCCCCCHH--HHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHHCCCeEEEeCCCCCcccc
Confidence            467788888999998875432 221  1234555567889999999987654 678899999999999999753211   


Q ss_pred             cccccccccchhhhhcCccccccccc
Q 014872          302 LGQHADLWVPWIEVENGELTERDLVP  327 (417)
Q Consensus       302 L~R~ADl~fSW~eV~~Gk~~~~~~~~  327 (417)
                      ..+.  .++.++.-..|..--+-|..
T Consensus        98 ~~~~--~~V~~d~~~~g~~~~~~l~~  121 (271)
T cd06312          98 LGAL--AYVGQDEYAAGEAAGERLAE  121 (271)
T ss_pred             ccce--EEeccChHHHHHHHHHHHHH
Confidence            1222  24555656666644444443

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional

Probab=89.62  E-value=3.3  Score=44.36  Aligned_cols=94  Identities=19%  Similarity=0.227  Sum_probs=65.8

Q ss_pred             chHHHHHHHhhcCCCC----CCC--------chHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCC--
Q 014872          210 NDKYNEAARSLLKPKV----GYG--------LGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDD--  275 (417)
Q Consensus       210 ~~KY~~AArevL~PKv----GYG--------LA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDD--  275 (417)
                      .+.+++++..+...+.    |.|        ++..|.|.|+.+....|.      .+.......++.+ +++|++|-.  
T Consensus       455 ~~~l~~aa~~L~~a~rI~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~d~------~~~~~~~~~l~~~-DvvI~iS~sG~  527 (638)
T PRK14101        455 FEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDL------YMQAASAALLGKG-DVIVAVSKSGR  527 (638)
T ss_pred             HHHHHHHHHHHhcCCEEEEEEccHHHHHHHHHHHHHhcCCceEEEcCCH------HHHHHHHhcCCCC-CEEEEEeCCCC
Confidence            3677788877766544    433        244577889888876542      2222112223333 789999975  


Q ss_pred             -cchHHHHHHHHHcCCcEEEEcCCCCcccccccccc
Q 014872          276 -NDFKEMLRKARDANLGTVVVGDSNRGLGQHADLWV  310 (417)
Q Consensus       276 -sdF~~~Lr~AR~~~v~TVVVGd~~~~L~R~ADl~f  310 (417)
                       .+...+++.||++|+++|.|.+..+.|.+.||+-|
T Consensus       528 t~e~i~~~~~Ak~~Ga~vIaIT~~~spLa~~aD~~L  563 (638)
T PRK14101        528 APELLRVLDVAMQAGAKVIAITSSNTPLAKRATVAL  563 (638)
T ss_pred             CHHHHHHHHHHHHCCCeEEEEcCCCChhHhhCCEEE
Confidence             45677888999999999999997788999999877

>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=89.59  E-value=1.8  Score=38.90  Aligned_cols=69  Identities=13%  Similarity=0.187  Sum_probs=52.2

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd  297 (417)
                      .|+..++++.|+.|.+..-..+.+.  -.+.+..+++.+++.|++.+-+++ +.+.++.++++|+..|+++.
T Consensus        19 ~~i~~~~~~~g~~v~~~~~~~~~~~--~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~   88 (282)
T cd06318          19 EAAKAHAKALGYELISTDAQGDLTK--QIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVVDS   88 (282)
T ss_pred             HHHHHHHHHcCCEEEEEcCCCCHHH--HHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHHCCCCEEEecC
Confidence            5788899999999887654334332  234566678899999999865543 35788999999999999986

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators

Probab=89.38  E-value=1.5  Score=38.95  Aligned_cols=70  Identities=19%  Similarity=0.123  Sum_probs=50.4

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHH-HhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQ-HSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~-~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+.+....-..+ . ....+. .+.+.+++.|++++.+....++++.++++++..|+|+..
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~~-~-~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvv~i~~~   89 (270)
T cd01545          19 LGALDACRDTGYQLVIEPCDSGSP-D-LAERVRALLQRSRVDGVILTPPLSDNPELLDLLDEAGVPYVRIAPG   89 (270)
T ss_pred             HHHHHHHHhCCCeEEEEeCCCCch-H-HHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHHhcCCCEEEEecC
Confidence            578888999999988764332211 1 233333 345789999999986655678899999999999999753

Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind

>PRK15408 autoinducer 2-binding protein lsrB; Provisional

Probab=88.60  E-value=1.7  Score=42.72  Aligned_cols=70  Identities=11%  Similarity=0.160  Sum_probs=52.1

Q ss_pred             CCchHHHHhcceEEEEe-CCCchhHHHHHHHHHHHhhhCCcceEEEEeC-CcchHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTV-RDKPQAADWALKRQMQHSMSSGVDWMFLVSD-DNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV-~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSD-DsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      -|+..+.++.|+.|... +....++.  -...|+.++..|++.|++++- ..-+.+.|+.|+++|+..|++...
T Consensus        43 ~Gi~~aa~~~G~~v~~~~~~~~d~~~--q~~~i~~li~~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~  114 (336)
T PRK15408         43 NGAKEAGKELGVDVTYDGPTEPSVSG--QVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSD  114 (336)
T ss_pred             HHHHHHHHHhCCEEEEECCCCCCHHH--HHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence            47788899999999763 22222221  135677788999999999874 445689999999999999988763

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=88.56  E-value=0.31  Score=46.83  Aligned_cols=47  Identities=26%  Similarity=0.517  Sum_probs=30.6

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhhhhccccchhHHHHHHhhcc
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKERYISG  209 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnrL~S~KGkrR~rl~~~~a~k  209 (417)
                      ..-|+|++||+.|+..+=..||++.-|+..    |..+     ++...|...|+.-
T Consensus        75 ~~K~~C~lc~KlFkg~eFV~KHI~nKH~e~----ve~~-----~~ev~~fnnY~~D  121 (214)
T PF04959_consen   75 EDKWRCPLCGKLFKGPEFVRKHIFNKHPEK----VEEV-----KKEVEYFNNYLLD  121 (214)
T ss_dssp             SEEEEE-SSS-EESSHHHHHHHHHHH-HHH----HHHH-----HHHHHHHHHH---
T ss_pred             CCEECCCCCCcccCChHHHHHHHhhcCHHH----HHHH-----HHHHHHHHHHhcC
Confidence            346999999999999999999999999853    2222     1345577777653

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein

Probab=88.29  E-value=3.1  Score=39.18  Aligned_cols=68  Identities=15%  Similarity=0.240  Sum_probs=52.1

Q ss_pred             CchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcC
Q 014872          228 GLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       228 GLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd  297 (417)
                      |+..+++..|+.+.+...-.+.+  .-.++++.+++.+++.|++++-+.. ..+.++.++++++..|+++.
T Consensus        19 ~i~~~a~~~g~~v~~~~~~~~~~--~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~~~iPvV~~d~   87 (302)
T TIGR02634        19 IFVAAAESLGAKVFVQSANGNEA--KQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKDEGIKVVAYDR   87 (302)
T ss_pred             HHHHHHHhcCCEEEEEeCCCCHH--HHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCCCeEEEecC
Confidence            67888999999987664322222  2345677778899999999997755 57899999999999888865

Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.

>PRK11557 putative DNA-binding transcriptional regulator; Provisional

Probab=88.14  E-value=1.6  Score=41.02  Aligned_cols=94  Identities=17%  Similarity=0.215  Sum_probs=62.1

Q ss_pred             chHHHHHHHhhcCCCC----CCC--------chHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCC--
Q 014872          210 NDKYNEAARSLLKPKV----GYG--------LGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDD--  275 (417)
Q Consensus       210 ~~KY~~AArevL~PKv----GYG--------LA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDD--  275 (417)
                      ..+.++++..+...+.    |.|        ++.-|.|.|..+....|.-. .     ......++. -|+++.+|=.  
T Consensus       115 ~~~l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~-~-----~~~~~~~~~-~Dv~I~iS~sg~  187 (278)
T PRK11557        115 EEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHA-L-----LATVQALSP-DDLLLAISYSGE  187 (278)
T ss_pred             HHHHHHHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHH-H-----HHHHHhCCC-CCEEEEEcCCCC
Confidence            3566667666655432    433        34457888998877644211 1     111112333 4677888844  


Q ss_pred             -cchHHHHHHHHHcCCcEEEEcCC-CCcccccccccc
Q 014872          276 -NDFKEMLRKARDANLGTVVVGDS-NRGLGQHADLWV  310 (417)
Q Consensus       276 -sdF~~~Lr~AR~~~v~TVVVGd~-~~~L~R~ADl~f  310 (417)
                       .+...+++.|+++|+++|+|.+. .+.+.+.||.-|
T Consensus       188 ~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l  224 (278)
T PRK11557        188 RRELNLAADEALRVGAKVLAITGFTPNALQQRASHCL  224 (278)
T ss_pred             CHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEE
Confidence             45568899999999999999996 578999999877

>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=88.11  E-value=2.4  Score=38.76  Aligned_cols=70  Identities=16%  Similarity=0.107  Sum_probs=54.4

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..+++..|+.+....-..+..  -...++..++.++++-|++.+-+++ ..+.++.+.++++..|+++..
T Consensus        19 ~gi~~~~~~~G~~~~~~~~~~d~~--~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~   89 (272)
T cd06313          19 QAADEAGKLLGVDVTWYGGALDAV--KQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDMGTL   89 (272)
T ss_pred             HHHHHHHHHcCCEEEEecCCCCHH--HHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHHCCCcEEEeCCC
Confidence            467788889999999875444433  3456677788899999999886655 567889999999999999763

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria

Probab=87.98  E-value=2.2  Score=38.81  Aligned_cols=69  Identities=22%  Similarity=0.287  Sum_probs=51.2

Q ss_pred             CCchHHHHhcceEEEEeCCC--chhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcC
Q 014872          227 YGLGSELRRAGVFVKTVRDK--PQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dK--PqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd  297 (417)
                      .|+..++++.|+.+......  +.+.  .....++.+++.+++-|++++-+.+....+..++.+|+..|+++.
T Consensus        19 ~gi~~~a~~~g~~~~~~~~~~~~~~~--~~~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~~giPvV~~~~   89 (268)
T cd06306          19 YGMVEEAKRLGVSLKLLEAGGYPNLA--KQIAQLEDCAAWGADAILLGAVSPDGLNEILQQVAASIPVIALVN   89 (268)
T ss_pred             HHHHHHHHHcCCEEEEecCCCCCCHH--HHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHCCCCEEEecc
Confidence            47888999999999877422  3232  234556667889999999998665543368889999999998965

TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=87.83  E-value=0.35  Score=36.25  Aligned_cols=25  Identities=20%  Similarity=0.669  Sum_probs=21.3

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhh
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLH  180 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLH  180 (417)
                      .+.++||+|..++..  +|.+|++..|
T Consensus        29 ~~~v~CPiC~~~~~~--~l~~Hl~~~H   53 (54)
T PF05605_consen   29 SKNVVCPICSSRVTD--NLIRHLNSQH   53 (54)
T ss_pred             CCCccCCCchhhhhh--HHHHHHHHhc
Confidence            357999999997664  9999999888

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia

Probab=87.63  E-value=2.8  Score=37.27  Aligned_cols=69  Identities=16%  Similarity=0.185  Sum_probs=51.4

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.|.++...-...  .....++.+++.+++-|++.+.+.+ ...++.++++|+..|+++..
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~~~~ipvV~~~~~   87 (265)
T cd06299          19 TAIQDAASAAGYSTIIGNSDENPE--TENRYLDNLLSQRVDGIIVVPHEQS-AEQLEDLLKRGIPVVFVDRE   87 (265)
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCHH--HHHHHHHHHHhcCCCEEEEcCCCCC-hHHHHHHHhCCCCEEEEecc
Confidence            377888999999999874321111  2345566678899999999876654 35689999999999999874

This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans

>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=87.57  E-value=2.2  Score=39.83  Aligned_cols=70  Identities=13%  Similarity=0.158  Sum_probs=51.1

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhC--CcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSS--GVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~r--gv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..+++..|+.+..+....+..  .....+..+.+.  +++.|++.+.+.....+++.++++|+..|+++..
T Consensus        20 ~gi~~~~~~~g~~v~~~~~~~~~~--~~~~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~   91 (305)
T cd06324          20 RFMQAAADDLGIELEVLYAERDRF--LMLQQARTILQRPDKPDALIFTNEKSVAPELLRLAEGAGVKLFLVNSG   91 (305)
T ss_pred             HHHHHHHHhcCCeEEEEeCCCCHH--HHHHHHHHHHHhccCCCEEEEcCCccchHHHHHHHHhCCCeEEEEecC
Confidence            478888999999987764322221  123344556778  9999999876655677899999999999999753

This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PHA00733 hypothetical protein

Probab=87.40  E-value=0.49  Score=41.67  Aligned_cols=26  Identities=27%  Similarity=0.696  Sum_probs=23.4

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQ  178 (417)
                      ...||.|+.||+.|++...|..|.+.
T Consensus        70 ~~kPy~C~~Cgk~Fss~s~L~~H~r~   95 (128)
T PHA00733         70 AVSPYVCPLCLMPFSSSVSLKQHIRY   95 (128)
T ss_pred             CCCCccCCCCCCcCCCHHHHHHHHhc
Confidence            35789999999999999999999874

>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily

Probab=87.26  E-value=2.6  Score=38.15  Aligned_cols=68  Identities=15%  Similarity=0.169  Sum_probs=50.8

Q ss_pred             CchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcch-HHHHHHHHHcCCcEEEEcCC
Q 014872          228 GLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDF-KEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       228 GLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF-~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      |+..+++..|+.+..+... +.. . ....+..++.++++-||+.+.++.. .++++.++++|+..|+++..
T Consensus        20 gi~~~~~~~g~~~~~~~~~-~~~-~-~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~   88 (289)
T cd01540          20 FAKKAAKEKGFTVVKIDVP-DGE-K-VLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAKAYNMKVVAVDDR   88 (289)
T ss_pred             HHHHHHHHcCCEEEEccCC-CHH-H-HHHHHHHHHHcCCCEEEEccCchhhhHHHHHHHHhCCCeEEEecCC
Confidence            6678888999998876332 322 1 2345666778999999999877654 45789999999999999763

Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a

>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI)

Probab=87.15  E-value=1.6  Score=38.72  Aligned_cols=71  Identities=20%  Similarity=0.223  Sum_probs=53.5

Q ss_pred             hHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCC---cchHHHHHHHHHcCCcEEEEcCC-CCccccc
Q 014872          230 GSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDD---NDFKEMLRKARDANLGTVVVGDS-NRGLGQH  305 (417)
Q Consensus       230 A~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDD---sdF~~~Lr~AR~~~v~TVVVGd~-~~~L~R~  305 (417)
                      +..|.+.|..|..+.+. .+           ..-..-++++.+|-.   .+...+++.|+++|+++|.|.+. .+.|.+.
T Consensus        52 ~~~l~~~g~~~~~~~~~-~~-----------~~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~  119 (179)
T cd05005          52 AMRLMHLGLNVYVVGET-TT-----------PAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKL  119 (179)
T ss_pred             HHHHHhCCCeEEEeCCC-CC-----------CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHh
Confidence            44677889999888652 11           112345788888855   67788999999999999999996 4689999


Q ss_pred             cccccch
Q 014872          306 ADLWVPW  312 (417)
Q Consensus       306 ADl~fSW  312 (417)
                      ||..|..
T Consensus       120 ad~~l~~  126 (179)
T cd05005         120 ADVVVVI  126 (179)
T ss_pred             CCEEEEe
Confidence            9998854

PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.

>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=87.08  E-value=3  Score=37.42  Aligned_cols=70  Identities=14%  Similarity=0.226  Sum_probs=50.1

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc----hHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDND----FKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd----F~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..+++..|+.+-+....-+..  -....++.++..+++.|++.+-+++    ...+++.++++++..|+++..
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~~--~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~~~~ipvV~~~~~   92 (273)
T cd01541          19 RGIESVLSEKGYSLLLASTNNDPE--RERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEKLGIPYVFINAS   92 (273)
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCHH--HHHHHHHHHHHcCCCEEEEeccccccccccHHHHHHHHHCCCCEEEEecC
Confidence            477889999999997654322221  1233455567899999999865432    457889999999999999864

Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i

>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=86.89  E-value=3.4  Score=36.80  Aligned_cols=70  Identities=21%  Similarity=0.284  Sum_probs=51.7

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+.+.....+..  .....+..+...+++.|++.+.+.+ ..+.++.++++++..|.++..
T Consensus        20 ~g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~~~~   90 (275)
T cd06317          20 KAFQAAAEEDGVEVIVLDANGDVA--RQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQAGIPVVITNSN   90 (275)
T ss_pred             HHHHHHHHhcCCEEEEEcCCcCHH--HHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHHHCCCcEEEeCCC
Confidence            366778888999998875433332  2334566677889999999886655 468889999999999988763

Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=86.36  E-value=0.061  Score=52.61  Aligned_cols=41  Identities=24%  Similarity=0.457  Sum_probs=32.3

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhhhhcc
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSL  194 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnrL~S~  194 (417)
                      +.+.|+|..||++|-.-.+|++|.|+ |+--|.=|++.++-+
T Consensus       142 ~vkr~lct~cgkgfndtfdlkrh~rt-htgvrpykc~~c~ka  182 (267)
T KOG3576|consen  142 DVKRHLCTFCGKGFNDTFDLKRHTRT-HTGVRPYKCSLCEKA  182 (267)
T ss_pred             HHHHHHHhhccCcccchhhhhhhhcc-ccCccccchhhhhHH
Confidence            44678888888888888888888876 777888888777655

>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs

Probab=86.34  E-value=3.3  Score=38.59  Aligned_cols=69  Identities=26%  Similarity=0.358  Sum_probs=52.2

Q ss_pred             CCchHHHHhcceEEEEe-CCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcC
Q 014872          227 YGLGSELRRAGVFVKTV-RDKPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV-~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd  297 (417)
                      .|+..++++.|+.|..+ ....+.+  .....+..+.+.+++-|++++-+.+ +.++++.++++++..|+++.
T Consensus        19 ~gi~~~a~~~g~~v~~~~~~~~d~~--~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~~~~iPvV~v~~   89 (298)
T cd06302          19 EGAKEAAKELGVDAIYVGPTTADAA--GQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKAREAGIKVVTHDS   89 (298)
T ss_pred             HHHHHHHHHhCCeEEEECCCCCCHH--HHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEEcC
Confidence            47888999999999875 3333333  1235556667889999999975544 77889999999999999975

Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p

>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase

Probab=86.23  E-value=2.1  Score=37.81  Aligned_cols=69  Identities=20%  Similarity=0.287  Sum_probs=51.5

Q ss_pred             HHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCC---cchHHHHHHHHHcCCcEEEEcCC-CCcccccc
Q 014872          231 SELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDD---NDFKEMLRKARDANLGTVVVGDS-NRGLGQHA  306 (417)
Q Consensus       231 ~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDD---sdF~~~Lr~AR~~~v~TVVVGd~-~~~L~R~A  306 (417)
                      .-|.+.|..+..+.+.-           ...+.. =+++|++|-.   .+-.++++.|+++|+++|.|.+. .+.|.+.|
T Consensus        50 ~~l~~~g~~~~~~~~~~-----------~~~~~~-~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~a  117 (179)
T TIGR03127        50 MRLMHLGFNVYVVGETT-----------TPSIKK-GDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGKLA  117 (179)
T ss_pred             HHHHhCCCeEEEeCCcc-----------cCCCCC-CCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhC
Confidence            44778899998886521           012223 4788888865   56778889999999999999885 57899999


Q ss_pred             ccccc
Q 014872          307 DLWVP  311 (417)
Q Consensus       307 Dl~fS  311 (417)
                      |.-|.
T Consensus       118 d~~l~  122 (179)
T TIGR03127       118 DVVVE  122 (179)
T ss_pred             CEEEE
Confidence            98764

Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.

>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism

Probab=85.89  E-value=3.6  Score=36.86  Aligned_cols=68  Identities=16%  Similarity=0.140  Sum_probs=49.4

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd  297 (417)
                      .|+..++++.|+.+.++......+  .-+..++.+++++++.+++++-+..- ..++.++++|+..|+++.
T Consensus        19 ~g~~~~a~~~g~~~~~~~~~~~~~--~~~~~i~~~~~~~vdgii~~~~~~~~-~~~~~~~~~~ipvV~~~~   86 (268)
T cd06270          19 SGVESVARKAGKHLIITAGHHSAE--KEREAIEFLLERRCDALILHSKALSD-DELIELAAQVPPLVLINR   86 (268)
T ss_pred             HHHHHHHHHCCCEEEEEeCCCchH--HHHHHHHHHHHcCCCEEEEecCCCCH-HHHHHHhhCCCCEEEEec
Confidence            477888999999999775433332  12455666788999999998743221 238889999999999976

Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi

>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein

Probab=85.83  E-value=2.8  Score=38.82  Aligned_cols=70  Identities=14%  Similarity=0.165  Sum_probs=48.5

Q ss_pred             CCchHHHHhcceE-EEEeCCC-chhHHHHHHHHHHHhhhCCcceEEEEeCCc-chHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVF-VKTVRDK-PQAADWALKRQMQHSMSSGVDWMFLVSDDN-DFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~-VrtV~dK-PqAAD~ALkrhm~~~m~rgv~cLvLVSDDs-dF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+. +...... .+.+  -....++.+++.+++-||+++-++ .....++.++++|+..|+++..
T Consensus        18 ~gi~~~a~~~g~~~~i~~~~~~~d~~--~q~~~i~~l~~~~vdgiIi~~~~~~~~~~~l~~~~~~giPvV~~~~~   90 (302)
T TIGR02637        18 KGAEEAAKELGSVYIIYTGPTGTTAE--GQIEVVNSLIAQKVDAIAISANDPDALVPALKKAMKRGIKVVTWDSG   90 (302)
T ss_pred             HHHHHHHHHhCCeeEEEECCCCCCHH--HHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEeCCC
Confidence            4778889999954 3332111 1222  123566777889999999988654 4567899999999999999753

This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.

>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis

Probab=85.52  E-value=3.1  Score=37.37  Aligned_cols=70  Identities=14%  Similarity=0.205  Sum_probs=49.8

Q ss_pred             CCchHHHHhcceEEEEeCC--CchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRD--KPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~d--KPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+..+.-  .....  .-.+.++.+...+++.||+++.+++ ....++.++++++..|.++..
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~~~~--~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~   91 (275)
T cd06320          19 EGYENEAKKLGVSVDIQAAPSEGDQQ--GQLSIAENMINKGYKGLLFSPISDVNLVPAVERAKKKGIPVVNVNDK   91 (275)
T ss_pred             HHHHHHHHHhCCeEEEEccCCCCCHH--HHHHHHHHHHHhCCCEEEECCCChHHhHHHHHHHHHCCCeEEEECCC
Confidence            5888999999999887631  22221  1224455567789999999876544 456789999999999988763

Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.

>PRK10653 D-ribose transporter subunit RbsB; Provisional

Probab=85.33  E-value=3.9  Score=37.84  Aligned_cols=71  Identities=15%  Similarity=0.202  Sum_probs=53.0

Q ss_pred             CCCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcch-HHHHHHHHHcCCcEEEEcCC
Q 014872          226 GYGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDF-KEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       226 GYGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF-~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      ..|+..++++.|+.+.......+.. . ....++++...+++.|++.+.+++. ...++.+++.|+..|+++..
T Consensus        45 ~~~i~~~~~~~G~~~~~~~~~~d~~-~-~~~~~~~l~~~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~  116 (295)
T PRK10653         45 KDGAQKEADKLGYNLVVLDSQNNPA-K-ELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRG  116 (295)
T ss_pred             HHHHHHHHHHcCCeEEEecCCCCHH-H-HHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHCCCCEEEEccC
Confidence            3688999999999988764433332 1 1344556678899999998877654 57899999999999999863

>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs

Probab=85.29  E-value=2.8  Score=38.36  Aligned_cols=70  Identities=9%  Similarity=0.244  Sum_probs=49.1

Q ss_pred             CCchHHHHhcceEEEEe--CCCc-hhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcC
Q 014872          227 YGLGSELRRAGVFVKTV--RDKP-QAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV--~dKP-qAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd  297 (417)
                      -|+..+|+..|+.+...  ...+ ..++ .-...+..+++++++.||+.+++....+.++.+.+++.-.|++.+
T Consensus        20 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~l~~~~vDgiIv~~~~~~~~~~~~~l~~~~~p~V~i~~   92 (280)
T cd06303          20 ASFTARLEELNIPYELTQFSSRPGIDHR-LQSQQLNEALQSKPDYLIFTLDSLRHRKLIERVLASGKTKIILQN   92 (280)
T ss_pred             HHHHHHHHHcCCcEEEEEeccCcccCHH-HHHHHHHHHHHcCCCEEEEcCCchhhHHHHHHHHhCCCCeEEEeC
Confidence            37788999999877764  2222 1111 123556667889999999987665567888888888877788865

Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate

>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems

Probab=85.24  E-value=5.6  Score=35.76  Aligned_cols=69  Identities=10%  Similarity=0.200  Sum_probs=50.7

Q ss_pred             CCchHHHHhc-ceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcC
Q 014872          227 YGLGSELRRA-GVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       227 YGLA~ELkRA-GV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd  297 (417)
                      .|+..++++. |+.|-+... ....+ .....++.+.+++++-|++++.+.+ +.+.++.+++.++..|+++.
T Consensus        19 ~~i~~~~~~~~g~~~~~~~~-~~~~~-~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~   89 (270)
T cd06308          19 DEIQREASNYPDVELIIADA-ADDNS-KQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAYRAGIPVILLDR   89 (270)
T ss_pred             HHHHHHHHhcCCcEEEEEcC-CCCHH-HHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHHHCCCCEEEeCC
Confidence            5778888885 898876633 22221 1234566678899999999886654 57788999999999999986

Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.

>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria

Probab=85.23  E-value=4.5  Score=35.78  Aligned_cols=70  Identities=17%  Similarity=0.268  Sum_probs=50.0

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+.......+..  .....++.+++.+++-|++++-+..-.++++.++++|+..|.++..
T Consensus        19 ~g~~~~a~~~g~~~~~~~~~~~~~--~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~   88 (268)
T cd06289          19 AGLEEVLEEAGYTVFLANSGEDVE--RQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAESGIPVVLVARE   88 (268)
T ss_pred             HHHHHHHHHcCCeEEEecCCCChH--HHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHhcCCCEEEEecc
Confidence            466678888899887764333322  2344556677899999999875544345899999999999999753

This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs

Probab=85.08  E-value=5.7  Score=35.10  Aligned_cols=70  Identities=17%  Similarity=0.277  Sum_probs=52.4

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcch-HHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDF-KEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF-~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..+++..|+.+.......+..  ..+..+..++..+++-+++++.++.. .++++.++++++..|+++..
T Consensus        19 ~~i~~~~~~~g~~v~~~~~~~~~~--~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~~~ipvv~~~~~   89 (268)
T cd06323          19 DGAQKEAKELGYELTVLDAQNDAA--KQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANEAGIPVFTIDRE   89 (268)
T ss_pred             HHHHHHHHHcCceEEecCCCCCHH--HHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHCCCcEEEEccC
Confidence            478889999999998775543333  22355666677899999998876654 46789999999999999774

Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.

>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=84.77  E-value=4.5  Score=36.20  Aligned_cols=70  Identities=14%  Similarity=0.221  Sum_probs=50.9

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+......-+.+.  -...+..+++.+++-+++.+.+++ ..++++.+.++++..|+++..
T Consensus        19 ~~i~~~~~~~g~~~~~~~~~~~~~~--~~~~i~~~~~~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~   89 (277)
T cd06319          19 RGVKSKAKALGYDAVELSAENSAKK--ELENLRTAIDKGVSGIIISPTNSSAAVTLLKLAAQAKIPVVIADIG   89 (277)
T ss_pred             HHHHHHHHhcCCeEEEecCCCCHHH--HHHHHHHHHhcCCCEEEEcCCchhhhHHHHHHHHHCCCCEEEEecC
Confidence            5777889999999987754322221  123344456789999998887766 457899999999999999753

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines

Probab=84.70  E-value=7.4  Score=34.84  Aligned_cols=70  Identities=20%  Similarity=0.255  Sum_probs=53.1

Q ss_pred             CCchHHHHh-cceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRR-AGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkR-AGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++ .|+.+.+....-+.+  -.++.+..+++.+++-|++.+-+++ ..++++.+.++++..|+++..
T Consensus        19 ~gi~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~~~~   90 (272)
T cd06301          19 NAMKEHAKVLGGVELQFEDAKNDVA--TQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAANAAGIPLVYVNRR   90 (272)
T ss_pred             HHHHHHHHHcCCcEEEEeCCCCCHH--HHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHHHHCCCeEEEecCC
Confidence            578888999 899998864432332  2335566778899999999887765 457889999999999999874

Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.

>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators

Probab=84.63  E-value=4.6  Score=36.33  Aligned_cols=64  Identities=16%  Similarity=0.225  Sum_probs=46.2

Q ss_pred             CchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhh-hCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcC
Q 014872          228 GLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSM-SSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       228 GLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m-~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd  297 (417)
                      |+..+++..|+.+.++.-.++ .    ..++.+.+ ..+++.|++++.+.+ ...++.++++|+.+|++|-
T Consensus        31 gi~~~~~~~g~~~~v~~~~~~-~----~~~~~~~l~~~~~dgiii~~~~~~-~~~~~~~~~~~ipvV~~~~   95 (275)
T cd06295          31 GIADALAERGYDLLLSFVSSP-D----RDWLARYLASGRADGVILIGQHDQ-DPLPERLAETGLPFVVWGR   95 (275)
T ss_pred             HHHHHHHHcCCEEEEEeCCch-h----HHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHHhCCCCEEEECC
Confidence            457888999999887754444 1    12333333 578999999876544 5678999999999999975

This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang

>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=84.59  E-value=5.1  Score=36.92  Aligned_cols=69  Identities=19%  Similarity=0.287  Sum_probs=52.5

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd  297 (417)
                      .|+..++++.|+.+.+........  .....+..+...+++-|++++.+.+ ..+.++.++++|+..|+++.
T Consensus        19 ~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~~~ipvV~~~~   88 (288)
T cd01538          19 PNFEAALKELGAEVIVQNANGDPA--KQISQIENMIAKGVDVLVIAPVDGEALASAVEKAADAGIPVIAYDR   88 (288)
T ss_pred             HHHHHHHHHcCCEEEEECCCCCHH--HHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHHCCCCEEEECC
Confidence            478889999999999875533322  1345555677899999999986544 67899999999998888875

Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.

>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=84.48  E-value=5  Score=35.81  Aligned_cols=69  Identities=14%  Similarity=0.175  Sum_probs=49.2

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd  297 (417)
                      .|+..+++..|+.+.+.....+.. . -...+..+++.+++.|++.+-+.+ +.++++.++++|+..|.++.
T Consensus        19 ~~i~~~~~~~g~~~~i~~~~~~~~-~-~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~   88 (267)
T cd06322          19 NAMKEEAKKQKVNLIVSIANQDLN-K-QLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKKAGIPVITVDI   88 (267)
T ss_pred             HHHHHHHHhcCCEEEEecCCCCHH-H-HHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEEcc
Confidence            577888999999987653322221 1 123344567899999999775543 67889999999999999975

This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association

Probab=84.42  E-value=0.65  Score=34.89  Aligned_cols=22  Identities=32%  Similarity=0.683  Sum_probs=11.8

Q ss_pred             ecccCCCCCCCh--HHHHHHHHHh
Q 014872          158 ICGVCGRKCKTN--LDLKKHFKQL  179 (417)
Q Consensus       158 ~C~VCGRkf~T~--~kL~kHFKQL  179 (417)
                      .||||||.|...  .+|.+++++-
T Consensus        22 ~CPlC~r~l~~e~~~~li~~~~~~   45 (54)
T PF04423_consen   22 CCPLCGRPLDEEHRQELIKKYKSE   45 (54)
T ss_dssp             E-TTT--EE-HHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHH
Confidence            999999999844  4555555543

The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.

>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=84.32  E-value=4.7  Score=37.08  Aligned_cols=70  Identities=17%  Similarity=0.237  Sum_probs=51.3

Q ss_pred             CCchHHHHhcceEEEEeCCCc-hhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKP-QAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKP-qAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+..+.... .++  ....++..++..+++-||+++.+.. ..++++.++++|+..|+++..
T Consensus        19 ~gi~~~a~~~g~~~~~~~~~~~~~~--~~~~~l~~~~~~~~dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~   90 (294)
T cd06316          19 RGAKDEFAKLGIEVVATTDAQFDPA--KQVADIETTISQKPDIIISIPVDPVSTAAAYKKVAEAGIKLVFMDNV   90 (294)
T ss_pred             HHHHHHHHHcCCEEEEecCCCCCHH--HHHHHHHHHHHhCCCEEEEcCCCchhhhHHHHHHHHcCCcEEEecCC
Confidence            467888999999987553322 222  2335566677889999999876654 578899999999999998774

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs

Probab=84.08  E-value=6.4  Score=35.53  Aligned_cols=96  Identities=16%  Similarity=0.173  Sum_probs=62.5

Q ss_pred             CCCCchHHHHhcceEEEEeC-CCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcCCCCcc
Q 014872          225 VGYGLGSELRRAGVFVKTVR-DKPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGDSNRGL  302 (417)
Q Consensus       225 vGYGLA~ELkRAGV~VrtV~-dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd~~~~L  302 (417)
                      +..|+..++++.|+.+..+. ....+..  ....+..+++++++-|++.+-+.+ ..++++.+.+ ++.+|+++......
T Consensus        16 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~--~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~-~ipvV~~~~~~~~~   92 (271)
T cd06314          16 AEAGVKAAGKELGVDVEFVVPQQGTVNA--QLRMLEDLIAEGVDGIAISPIDPKAVIPALNKAAA-GIKLITTDSDAPDS   92 (271)
T ss_pred             HHHHHHHHHHHcCCeEEEeCCCCCCHHH--HHHHHHHHHhcCCCEEEEecCChhHhHHHHHHHhc-CCCEEEecCCCCcc
Confidence            34688899999999998874 2222221  234566678899999999876543 5688898888 99999998633222


Q ss_pred             ccccccccchhhhhcCccccccc
Q 014872          303 GQHADLWVPWIEVENGELTERDL  325 (417)
Q Consensus       303 ~R~ADl~fSW~eV~~Gk~~~~~~  325 (417)
                      .+.+  ++..+....|+.-.+-|
T Consensus        93 ~~~~--~V~~D~~~~g~~a~~~l  113 (271)
T cd06314          93 GRYV--YIGTDNYAAGRTAGEIM  113 (271)
T ss_pred             ceeE--EEccChHHHHHHHHHHH
Confidence            3333  34444455555544444

Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).

>PF01380 SIS: SIS domain SIS domain web page

Probab=83.83  E-value=1.3  Score=35.91  Aligned_cols=47  Identities=19%  Similarity=0.316  Sum_probs=37.8

Q ss_pred             CcceEEEEeC---CcchHHHHHHHHHcCCcEEEEcCC-CCccccccccccc
Q 014872          265 GVDWMFLVSD---DNDFKEMLRKARDANLGTVVVGDS-NRGLGQHADLWVP  311 (417)
Q Consensus       265 gv~cLvLVSD---DsdF~~~Lr~AR~~~v~TVVVGd~-~~~L~R~ADl~fS  311 (417)
                      .-++++++|-   ..+..+.++.|+++|+++|+|.+. +..+.+.||.-|.
T Consensus        53 ~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~  103 (131)
T PF01380_consen   53 PDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLY  103 (131)
T ss_dssp             TTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEE
T ss_pred             ccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEE
Confidence            3488888884   456778889999999999999985 5789999987653

; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....

>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine)

Probab=83.60  E-value=2.6  Score=38.95  Aligned_cols=68  Identities=18%  Similarity=0.229  Sum_probs=51.2

Q ss_pred             chHHHHhcceEEEEeCCCch-hHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          229 LGSELRRAGVFVKTVRDKPQ-AADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       229 LA~ELkRAGV~VrtV~dKPq-AAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      +...|++.|+.|-.....|. +.|  ...++..+...+++.|+|.....+...+++.+++.|+...++|..
T Consensus       155 ~~~~~~~~g~~v~~~~~~~~~~~d--~~~~l~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~  223 (334)
T cd06342         155 FKKALKAAGGKVVAREGTTDGATD--FSAILTKIKAANPDAVFFGGYYPEAGPLVRQMRQLGLKAPFMGGD  223 (334)
T ss_pred             HHHHHHHcCCEEEEEecCCCCCcc--HHHHHHHHHhcCCCEEEEcCcchhHHHHHHHHHHcCCCCcEEecC
Confidence            34567777887765544443 333  445566667789999999999999999999999999998888763

This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.

>PRK13937 phosphoheptose isomerase; Provisional

Probab=83.50  E-value=4.2  Score=37.01  Aligned_cols=48  Identities=17%  Similarity=0.167  Sum_probs=40.0

Q ss_pred             ceEEEEeC---CcchHHHHHHHHHcCCcEEEEcCC-CCccccccccccchhh
Q 014872          267 DWMFLVSD---DNDFKEMLRKARDANLGTVVVGDS-NRGLGQHADLWVPWIE  314 (417)
Q Consensus       267 ~cLvLVSD---DsdF~~~Lr~AR~~~v~TVVVGd~-~~~L~R~ADl~fSW~e  314 (417)
                      +.++.+|-   ..+-..+++.|+++|++||.+.+. .+.|.+.||..+....
T Consensus       108 Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~~  159 (188)
T PRK13937        108 DVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVPS  159 (188)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence            88888884   567788999999999999999874 5789999999876543

>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems

Probab=83.29  E-value=5.5  Score=35.87  Aligned_cols=70  Identities=14%  Similarity=0.275  Sum_probs=53.2

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..+++..|+.+......-++..  -.+.+..++..+++-|++.+.+.+ +.+.++.+.++++..|+++..
T Consensus        19 ~~~~~~a~~~g~~~~~~~~~~~~~~--~~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~~~~   89 (273)
T cd06309          19 KSIKDAAEKRGFDLKFADAQQKQEN--QISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAAGIPVILVDRG   89 (273)
T ss_pred             HHHHHHHHhcCCEEEEeCCCCCHHH--HHHHHHHHHHcCCCEEEEcCCccccchHHHHHHHHCCCCEEEEecC
Confidence            4678889999999998754433331  235566678889999999887655 567889999999999999863

Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.

>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=83.27  E-value=5.7  Score=36.49  Aligned_cols=69  Identities=14%  Similarity=0.149  Sum_probs=50.8

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd  297 (417)
                      .|+..+++..|+.+.....-...+.  ..+.+..+...+++.|+|++-+.+ ..+.+..+++.++..|+++.
T Consensus        20 ~gi~~~a~~~gy~~~~~~~~~~~~~--~~~~i~~l~~~~vdgiil~~~~~~~~~~~~~~~~~~~iPvV~~d~   89 (280)
T cd06315          20 EGVREAAKAIGWNLRILDGRGSEAG--QAAALNQAIALKPDGIVLGGVDAAELQAELELAQKAGIPVVGWHA   89 (280)
T ss_pred             HHHHHHHHHcCcEEEEECCCCCHHH--HHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHCCCCEEEecC
Confidence            5777889999999887644333332  234555567899999999986654 35677888889999999976

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=83.16  E-value=2.4  Score=39.12  Aligned_cols=67  Identities=13%  Similarity=0.253  Sum_probs=49.8

Q ss_pred             chHHHHhcceEEEEeCC-CchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcC
Q 014872          229 LGSELRRAGVFVKTVRD-KPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       229 LA~ELkRAGV~VrtV~d-KPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd  297 (417)
                      +..+|+++|+.|-.+.. .+...|  ...++.++...+++.+++.+...+...+++.|++.|++..++|.
T Consensus       156 ~~~~~~~~g~~v~~~~~~~~~~~d--~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~~~~g~~~~i~~~  223 (334)
T cd06347         156 FKEAFKKLGGEIVAEETFNAGDTD--FSAQLTKIKAKNPDVIFLPGYYTEVGLIAKQARELGIKVPILGG  223 (334)
T ss_pred             HHHHHHHcCCEEEEEEEecCCCCc--HHHHHHHHHhcCCCEEEEcCchhhHHHHHHHHHHcCCCCcEEec
Confidence            44466677877654322 233333  56667777889999999999999999999999999998777764

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species

Probab=83.06  E-value=6.4  Score=36.89  Aligned_cols=69  Identities=16%  Similarity=0.219  Sum_probs=50.8

Q ss_pred             CCchHHHHh--cceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcC
Q 014872          227 YGLGSELRR--AGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       227 YGLA~ELkR--AGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd  297 (417)
                      .|+..+++.  .|+.+......-+++  --...++.++..+++-||+...+++ ..++++.+++.|+..|+++.
T Consensus        19 ~gi~~~a~~~~~g~~~~~~~~~~~~~--~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~   90 (303)
T cd01539          19 KNLEDIQKENGGKVEFTFYDAKNNQS--TQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQKNIPVIFFNR   90 (303)
T ss_pred             HHHHHHHHhhCCCeeEEEecCCCCHH--HHHHHHHHHHHcCCCEEEEecCchhhHHHHHHHHHHCCCCEEEeCC
Confidence            467788888  888887664432222  1234466678899999999876654 67899999999999888875

Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=83.01  E-value=0.75  Score=46.19  Aligned_cols=38  Identities=21%  Similarity=0.573  Sum_probs=30.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRM  191 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnrL  191 (417)
                      -++||.|+.|||.|-.+.+|.-|+.+ |-.-.+-.+.|+
T Consensus       212 GEKPF~C~hC~kAFADRSNLRAHmQT-HS~~K~~qC~~C  249 (279)
T KOG2462|consen  212 GEKPFSCPHCGKAFADRSNLRAHMQT-HSDVKKHQCPRC  249 (279)
T ss_pred             CCCCccCCcccchhcchHHHHHHHHh-hcCCccccCcch
Confidence            56899999999999999999999865 554445445554

>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=82.91  E-value=6.8  Score=35.31  Aligned_cols=68  Identities=15%  Similarity=0.152  Sum_probs=47.9

Q ss_pred             CchHHHHhc-----ceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCC-cchHHHHHHHHHcCCcEEEEcC
Q 014872          228 GLGSELRRA-----GVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDD-NDFKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       228 GLA~ELkRA-----GV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDD-sdF~~~Lr~AR~~~v~TVVVGd  297 (417)
                      |+..++++.     |+.+........+.  .....++.++..+++-|++++-+ ..+...++.++++|+..|.++.
T Consensus        20 gi~~~a~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~~vDgiii~~~~~~~~~~~i~~~~~~gIpvV~~d~   93 (274)
T cd06311          20 HAQAAAKKLEAAYPDVEFILVTASNDTE--QQNAQQDLLINRKIDALVILPFESAPLTQPVAKAKKAGIFVVVVDR   93 (274)
T ss_pred             HHHHHHHHhhhhCCCeEEEEEcCCCCHH--HHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHHCCCeEEEEcC
Confidence            566667775     68877765433322  22334445677899999998755 4467889999999999999875

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional

Probab=82.80  E-value=3.8  Score=38.91  Aligned_cols=76  Identities=17%  Similarity=0.190  Sum_probs=53.3

Q ss_pred             chHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCC---cchHHHHHHHHHcCCcEEEEcCCC-Ccccc
Q 014872          229 LGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDD---NDFKEMLRKARDANLGTVVVGDSN-RGLGQ  304 (417)
Q Consensus       229 LA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDD---sdF~~~Lr~AR~~~v~TVVVGd~~-~~L~R  304 (417)
                      ++.-|.|.|+.+..+.|.-...      .....+ .--|++|++|-.   .+...+++.|+++|+++|+|.+.. +.|.+
T Consensus       158 l~~~l~~~g~~~~~~~d~~~~~------~~~~~~-~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~  230 (292)
T PRK11337        158 VQHKFLRIGVRCQAYDDAHIML------MSAALL-QEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAK  230 (292)
T ss_pred             HHHHHhhCCCeEEEcCCHHHHH------HHHhcC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence            3455778999988775432111      001112 234777888864   668889999999999999999964 68899


Q ss_pred             ccccccc
Q 014872          305 HADLWVP  311 (417)
Q Consensus       305 ~ADl~fS  311 (417)
                      .||.-|.
T Consensus       231 ~ad~~l~  237 (292)
T PRK11337        231 LADYVIC  237 (292)
T ss_pred             hCCEEEE
Confidence            9998873

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=82.78  E-value=1.2  Score=37.40  Aligned_cols=32  Identities=31%  Similarity=0.696  Sum_probs=27.7

Q ss_pred             cCccCCCCCeec----ccCCCCCCChHHHHHHHHHhh
Q 014872          148 RGVAVPNDPYIC----GVCGRKCKTNLDLKKHFKQLH  180 (417)
Q Consensus       148 ~G~v~p~~PY~C----~VCGRkf~T~~kL~kHFKQLH  180 (417)
                      .|++.. ..|.|    +.|+..+.+...+.+||++.|
T Consensus        73 ~gLp~~-~G~~C~~~~~~C~y~~~~~~~m~~H~~~~H  108 (109)
T PF12013_consen   73 PGLPVY-DGYRCQCDPPHCGYITRSKKTMRKHWRKEH  108 (109)
T ss_pred             CCCCCC-CCeeeecCCCCCCcEeccHHHHHHHHHHhc
Confidence            355444 67999    999999999999999999998

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD)

Probab=82.70  E-value=2  Score=35.26  Aligned_cols=75  Identities=17%  Similarity=0.159  Sum_probs=50.5

Q ss_pred             chHHHHhcc-eEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCC---cchHHHHHHHHHcCCcEEEEcCCC-Cccc
Q 014872          229 LGSELRRAG-VFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDD---NDFKEMLRKARDANLGTVVVGDSN-RGLG  303 (417)
Q Consensus       229 LA~ELkRAG-V~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDD---sdF~~~Lr~AR~~~v~TVVVGd~~-~~L~  303 (417)
                      ++.-|.+.| ..+....  +  .+...  +. .. -..-+.++.+|-+   .+-..+++.|+++|.++|.|.+.. +.|.
T Consensus        17 ~~~~l~~~~~~~~~~~~--~--~~~~~--~~-~~-~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la   88 (126)
T cd05008          17 AKYLLERLAGIPVEVEA--A--SEFRY--RR-PL-LDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLA   88 (126)
T ss_pred             HHHHHHHhcCCceEEEe--h--hHhhh--cC-CC-CCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHH
Confidence            456677876 7777664  2  21111  11 11 1345677888854   456677889999999999999964 6899


Q ss_pred             cccccccc
Q 014872          304 QHADLWVP  311 (417)
Q Consensus       304 R~ADl~fS  311 (417)
                      +.||..|.
T Consensus        89 ~~ad~~l~   96 (126)
T cd05008          89 READYVLY   96 (126)
T ss_pred             HhCCEEEE
Confidence            99998773

The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont

>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions

Probab=82.52  E-value=4.2  Score=41.73  Aligned_cols=88  Identities=27%  Similarity=0.326  Sum_probs=66.4

Q ss_pred             hHHHHHHHhhc--CCCC--------CCCchHHHHhcc--eEEEEeCCCch---hHHHHHHHHHHHhhh-CCcceEEEEeC
Q 014872          211 DKYNEAARSLL--KPKV--------GYGLGSELRRAG--VFVKTVRDKPQ---AADWALKRQMQHSMS-SGVDWMFLVSD  274 (417)
Q Consensus       211 ~KY~~AArevL--~PKv--------GYGLA~ELkRAG--V~VrtV~dKPq---AAD~ALkrhm~~~m~-rgv~cLvLVSD  274 (417)
                      +.=.+||.++-  -|-.        |.-+.+|||+.|  |.|-+|++-|.   .||.++.+|++..+. -+++-.++|||
T Consensus        28 e~vl~AA~~l~laDPeDSD~N~if~avkiydeL~~~GedveVA~VsG~~~~~v~ad~~I~~qld~vl~~~~~~~~i~VsD  107 (344)
T PF04123_consen   28 EAVLDAAVKLALADPEDSDVNAIFGAVKIYDELKAEGEDVEVAVVSGSPDVGVEADRKIAEQLDEVLSKFDPDSAIVVSD  107 (344)
T ss_pred             HHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCchhhHHHHHHHHHHHHHhCCCCEEEEEec
Confidence            34455666533  3543        467889999999  67778888877   799999999999997 78999999999


Q ss_pred             CcchHHHHHHHHHc----CCcEEEEcCC
Q 014872          275 DNDFKEMLRKARDA----NLGTVVVGDS  298 (417)
Q Consensus       275 DsdF~~~Lr~AR~~----~v~TVVVGd~  298 (417)
                      -.+=.-++---+.+    +++.|||=-+
T Consensus       108 GaeDE~vlPiIqSr~~V~sV~RVVVkQs  135 (344)
T PF04123_consen  108 GAEDERVLPIIQSRVPVDSVKRVVVKQS  135 (344)
T ss_pred             ChhhhhhhHhhhccCceEEEEEEEEEcC
Confidence            88777666655554    5677777553

>PRK10014 DNA-binding transcriptional repressor MalI; Provisional

Probab=82.44  E-value=5.7  Score=37.26  Aligned_cols=69  Identities=16%  Similarity=0.269  Sum_probs=49.7

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd  297 (417)
                      .|+..++++.|+.+-++.......  .....+..+++.+++.|++++.+......+..+++.++..|+++.
T Consensus        84 ~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~~~  152 (342)
T PRK10014         84 AGLTEALEAQGRMVFLLQGGKDGE--QLAQRFSTLLNQGVDGVVIAGAAGSSDDLREMAEEKGIPVVFASR  152 (342)
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCHH--HHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHhhcCCCEEEEec
Confidence            356677888888887664433322  123445556788999999987665566788999999999999975

>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional

Probab=82.19  E-value=4.9  Score=38.83  Aligned_cols=95  Identities=21%  Similarity=0.240  Sum_probs=60.0

Q ss_pred             CCchHHHHhcceEEEEeCCC--chhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcCCCCccc
Q 014872          227 YGLGSELRRAGVFVKTVRDK--PQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGDSNRGLG  303 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dK--PqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd~~~~L~  303 (417)
                      .|+..+++..|+.+......  +++.  .....++.+++.+++-|+|++.+.+ ..+.+ .+++.|+..|.+++....  
T Consensus        66 ~gi~~aa~~~G~~l~i~~~~~~~~~~--~q~~~i~~l~~~~vdgIIl~~~~~~~~~~~l-~~~~~giPvV~~~~~~~~--  140 (343)
T PRK10936         66 YGMVEEAKRLGVDLKVLEAGGYYNLA--KQQQQLEQCVAWGADAILLGAVTPDGLNPDL-ELQAANIPVIALVNGIDS--  140 (343)
T ss_pred             HHHHHHHHHhCCEEEEEcCCCCCCHH--HHHHHHHHHHHhCCCEEEEeCCChHHhHHHH-HHHHCCCCEEEecCCCCC--
Confidence            47778889999998877432  2332  2456677788999999999986644 45677 889999988877543211  


Q ss_pred             cccccccchhhhhcCcccccccc
Q 014872          304 QHADLWVPWIEVENGELTERDLV  326 (417)
Q Consensus       304 R~ADl~fSW~eV~~Gk~~~~~~~  326 (417)
                      -.+.-.+..+..+.|..--+-|+
T Consensus       141 ~~~~~~V~~D~~~~g~~aa~~L~  163 (343)
T PRK10936        141 PQVTTRVGVSWYQMGYQAGRYLA  163 (343)
T ss_pred             ccceEEEecChHHHHHHHHHHHH
Confidence            11122344555555544433333

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=82.14  E-value=0.47  Score=53.58  Aligned_cols=34  Identities=29%  Similarity=0.698  Sum_probs=27.6

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHHHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKK  187 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KR  187 (417)
                      -++||+|.+|||-|.|.-+|+-||- +|--.+.-|
T Consensus       630 GERPFkCKiCgRAFtTkGNLkaH~~-vHka~p~~R  663 (958)
T KOG1074|consen  630 GERPFKCKICGRAFTTKGNLKAHMS-VHKAKPPAR  663 (958)
T ss_pred             CcCccccccccchhccccchhhccc-ccccCcccc
Confidence            4589999999999999999999994 565444444

>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=81.80  E-value=7.4  Score=34.39  Aligned_cols=68  Identities=16%  Similarity=0.237  Sum_probs=51.1

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..+++..|+.+..+...... +  ....++.+..++++-|++++.+.+ ..+++.+.+.|+..|.++..
T Consensus        19 ~~i~~~~~~~g~~~~~~~~~~~~-~--~~~~i~~~~~~~vdgiii~~~~~~-~~~~~~~~~~~ipvV~~~~~   86 (266)
T cd06278          19 EALSRALQARGYQPLLINTDDDE-D--LDAALRQLLQYRVDGVIVTSGTLS-SELAEECRRNGIPVVLINRY   86 (266)
T ss_pred             HHHHHHHHHCCCeEEEEcCCCCH-H--HHHHHHHHHHcCCCEEEEecCCCC-HHHHHHHhhcCCCEEEECCc
Confidence            36788999999999877544332 2  345667778899999999876543 35688999999999999763

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors

Probab=81.50  E-value=5.9  Score=35.17  Aligned_cols=67  Identities=16%  Similarity=0.304  Sum_probs=47.2

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhh-CCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMS-SGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~-rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd  297 (417)
                      .|+..++++.|+.+...... ...  ....++...+. .+++.||+++-+.. ..+++.+.++|+..|+++.
T Consensus        24 ~~~~~~~~~~g~~~~~~~~~-~~~--~~~~~~~~~~~~~~~dgiii~~~~~~-~~~~~~~~~~~ipvV~~~~   91 (270)
T cd06294          24 RGISAVANENGYDISLATGK-NEE--ELLEEVKKMIQQKRVDGFILLYSRED-DPIIDYLKEEKFPFVVIGK   91 (270)
T ss_pred             HHHHHHHHHCCCEEEEecCC-CcH--HHHHHHHHHHHHcCcCEEEEecCcCC-cHHHHHHHhcCCCEEEECC
Confidence            47788899999998765322 222  23345555554 67999999874433 5778899999999999986

This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>TIGR00441 gmhA phosphoheptose isomerase

Probab=81.47  E-value=5.7  Score=34.97  Aligned_cols=48  Identities=15%  Similarity=0.232  Sum_probs=39.3

Q ss_pred             CCcceEEEEeCC---cchHHHHHHHHHcCCcEEEEcCC-CCccccccccccc
Q 014872          264 SGVDWMFLVSDD---NDFKEMLRKARDANLGTVVVGDS-NRGLGQHADLWVP  311 (417)
Q Consensus       264 rgv~cLvLVSDD---sdF~~~Lr~AR~~~v~TVVVGd~-~~~L~R~ADl~fS  311 (417)
                      ..=+.++++|-+   .+-..+++.||++|+++|.+.+. .+.|.+.||..+.
T Consensus        78 ~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~  129 (154)
T TIGR00441        78 QKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELR  129 (154)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEE
Confidence            444889999965   56668889999999999999985 4689999998764

Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.

>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily

Probab=81.43  E-value=8.3  Score=33.45  Aligned_cols=69  Identities=19%  Similarity=0.208  Sum_probs=50.8

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..+++..|+.+.......+.+  -....+..+++++++.||+...++.=.. ++.+.++|+..|.++..
T Consensus        19 ~g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~iii~~~~~~~~~-~~~~~~~~ipvv~~~~~   87 (264)
T cd06267          19 RGIEEAAREAGYSVLLCNSDEDPE--KEREALELLLSRRVDGIILAPSRLDDEL-LEELAALGIPVVLVDRP   87 (264)
T ss_pred             HHHHHHHHHcCCEEEEEcCCCCHH--HHHHHHHHHHHcCcCEEEEecCCcchHH-HHHHHHcCCCEEEeccc
Confidence            466777888898888776654432  2234455678899999999887765544 88999999999988764

Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.

>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation

Probab=81.27  E-value=7.1  Score=34.78  Aligned_cols=69  Identities=16%  Similarity=0.120  Sum_probs=50.3

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..+++..|+.+.......+.  ......+..+...+++-|++++-+.+ ...++.++++++..|.++..
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~--~~~~~~i~~l~~~~~dgiii~~~~~~-~~~~~~~~~~~ipvV~i~~~   87 (270)
T cd06296          19 RGVEEAAAAAGYDVVLSESGRRT--SPERQWVERLSARRTDGVILVTPELT-SAQRAALRRTGIPFVVVDPA   87 (270)
T ss_pred             HHHHHHHHHcCCeEEEecCCCch--HHHHHHHHHHHHcCCCEEEEecCCCC-hHHHHHHhcCCCCEEEEecc
Confidence            57888999999999876544332  12233445567789999998876544 36689999999999999863

This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>COG1737 RpiR Transcriptional regulators [Transcription]

Probab=80.71  E-value=4.4  Score=39.14  Aligned_cols=95  Identities=20%  Similarity=0.217  Sum_probs=66.5

Q ss_pred             hHHHHHHHhhcCCCC----CCC--------chHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcc-eEEEEeCC--
Q 014872          211 DKYNEAARSLLKPKV----GYG--------LGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVD-WMFLVSDD--  275 (417)
Q Consensus       211 ~KY~~AArevL~PKv----GYG--------LA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~-cLvLVSDD--  275 (417)
                      ....+|+..+...+.    |.|        ++.-|.|-|+.|..++|..... +       .+...+.+ ++|.+|-.  
T Consensus       118 ~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~-~-------~~~~~~~~Dv~i~iS~sG~  189 (281)
T COG1737         118 EALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQL-M-------QLALLTPGDVVIAISFSGY  189 (281)
T ss_pred             HHHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcCCceeEecchHHHH-H-------HHHhCCCCCEEEEEeCCCC
Confidence            566666666666652    433        3456788999999998765543 1       22334544 45555544  


Q ss_pred             -cchHHHHHHHHHcCCcEEEEcCC-CCccccccccccchh
Q 014872          276 -NDFKEMLRKARDANLGTVVVGDS-NRGLGQHADLWVPWI  313 (417)
Q Consensus       276 -sdF~~~Lr~AR~~~v~TVVVGd~-~~~L~R~ADl~fSW~  313 (417)
                       .+-..+++.|+++|+++|.|.+. ...|.+.||+.+.=.
T Consensus       190 t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~  229 (281)
T COG1737         190 TREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVP  229 (281)
T ss_pred             cHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEecc
Confidence             34567788999999999999997 679999999988643

>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=80.39  E-value=8.1  Score=34.59  Aligned_cols=70  Identities=14%  Similarity=0.170  Sum_probs=50.0

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeC---Cc-chHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSD---DN-DFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSD---Ds-dF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+.......+..  --.+.++.+.+.+++.|++.+-   +. ...+.++.+.++|+..|+++..
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~~--~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i~~~   92 (273)
T cd06292          19 EAIEAALAQYGYTVLLCNTYRGGV--SEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLAERGLPVVLVNGR   92 (273)
T ss_pred             HHHHHHHHHCCCEEEEEeCCCChH--HHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEEcCC
Confidence            578889999999987654332222  1234556677899999999862   22 2456688889999999999863

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily

Probab=80.26  E-value=4.1  Score=35.72  Aligned_cols=67  Identities=27%  Similarity=0.370  Sum_probs=45.7

Q ss_pred             hHHHHhcceEEEEeCCCc-hhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          230 GSELRRAGVFVKTVRDKP-QAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       230 A~ELkRAGV~VrtV~dKP-qAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      ...+++.|+.+......+ ...|  ....+..+...+++.+++.++..+...+++.+++.|+.-.++|-.
T Consensus       156 ~~~~~~~g~~i~~~~~~~~~~~~--~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~  223 (298)
T cd06268         156 REALKKLGGEVVAEETYPPGATD--FSPLIAKLKAAGPDAVFLAGYGGDAALFLKQAREAGLKVPIVGGD  223 (298)
T ss_pred             HHHHHHcCCEEEEEeccCCCCcc--HHHHHHHHHhcCCCEEEEccccchHHHHHHHHHHcCCCCcEEecC
Confidence            345566665554332222 1122  345566667778999999999899999999999999877777653

Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC

>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily

Probab=80.20  E-value=11  Score=33.10  Aligned_cols=69  Identities=20%  Similarity=0.293  Sum_probs=48.9

Q ss_pred             CchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcch-HHHHHHHHHcCCcEEEEcCC
Q 014872          228 GLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDF-KEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       228 GLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF-~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      |+..+++..|+.+.++....+.. .+ .+.+..+...+++.+++++-+.+. .++++.+++.++..|.++..
T Consensus        20 ~~~~~a~~~g~~~~~~~~~~~~~-~~-~~~~~~l~~~~vdgvi~~~~~~~~~~~~~~~l~~~~ip~V~~~~~   89 (267)
T cd01536          20 GAEAAAKELGVELIVLDAQNDVS-KQ-IQQIEDLIAQGVDGIIISPVDSAALTPALKKANAAGIPVVTVDSD   89 (267)
T ss_pred             HHHHHHHhcCceEEEECCCCCHH-HH-HHHHHHHHHcCCCEEEEeCCCchhHHHHHHHHHHCCCcEEEecCC
Confidence            45566677889988875543322 11 244555677899999999876554 45889999999999999874

Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	417
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 4e-09
 Identities = 61/396 (15%), Positives = 120/396 (30%), Gaps = 117/396 (29%)

Query: 61  IDIDMVRNKQGIYTQKQNNKVVVLW------DLDNKPPRGPPYDAAMSLRRVAERFGEVT 114
           +D +    +     Q Q   ++ ++      + D K       D     + +  +  E+ 
Sbjct: 7   MDFET--GEH----QYQYKDILSVFEDAFVDNFDCK-------DVQDMPKSILSK-EEID 52

Query: 115 DISAYANRHAFIHLPQWVIQERRER--KQF--DILERRGVAVPNDPYICGVCGRKCKTNL 170
            I    +  +      W +  ++E   ++F  ++L        N  ++            
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR------INYKFL------------ 94

Query: 171 DLKKHFKQLHERERQKKLNRMKSLKGKKR-----QKYKERYISGNDKYNEAARSL--LKP 223
                   +   +RQ  +     ++ + R     Q + +  +S    Y +  ++L  L+P
Sbjct: 95  -----MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 224 KVG---YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFL--VSDDNDF 278
                  G+      +G   KT      A D  L  ++Q  M   + W+ L   +     
Sbjct: 150 AKNVLIDGVLG----SG---KTW----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 279 KEMLRKAR---DANLGTVVVGDSNRGLGQHA----------------------DLWVPWI 313
            EML+K     D N  +     SN  L  H+                      ++     
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 314 EVENGELTERDLVPRTRRTTTEDFE-RDGLGLFSLTEF---DGVVGF-EDETD------L 362
                 L+ + L+      TT   +  D L   + T        +    DE        L
Sbjct: 259 -WNAFNLSCKILL------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 363 DSVVNELVAERTEFGGVRISMFSEGEEEE----DYW 394
           D    +L  E       R+S+ +E   +     D W
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	417
2qip_A	165	Protein of unknown function VPA0982; APC85975, vib	98.38
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.87
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.79
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	97.73
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.72
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.72
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	97.71
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.7
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.68
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.67
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.67
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.66
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.66
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.65
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.64
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.77
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	97.6
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.59
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.57
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.57
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.57
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.55
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	97.55
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	97.55
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.69
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.54
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.53
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	97.52
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.52
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	97.51
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.5
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.49
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.48
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	97.48
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	97.48
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.47
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.46
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	97.46
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	97.45
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.45
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.44
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.43
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.43
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.43
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.42
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	97.42
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.42
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.42
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.42
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.41
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.41
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	97.41
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.41
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.41
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.41
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	97.41
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.4
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.4
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.4
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.4
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.4
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	97.39
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.39
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	97.39
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.5
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.38
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.38
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	97.37
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.37
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	97.37
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.37
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.37
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.36
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	97.36
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.35
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.35
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.35
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	97.35
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.35
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.35
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.35
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	97.35
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.35
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.35
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.34
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	97.33
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	97.33
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.33
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	97.33
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.33
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	97.33
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.32
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.32
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.32
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.32
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	97.32
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	97.32
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.32
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.31
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	97.31
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	97.31
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.31
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.3
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	97.3
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.3
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.3
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.3
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.29
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.29
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	97.29
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.29
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.29
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.29
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.28
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.28
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.28
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	97.28
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.28
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.27
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.27
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.27
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.27
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.26
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	97.26
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.26
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.25
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.24
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.24
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	97.22
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.21
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.21
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	97.21
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.2
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.19
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	97.15
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.14
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	97.13
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	97.13
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	97.11
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	97.1
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.1
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.1
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.09
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	97.08
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	97.08
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	97.06
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	97.04
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.03
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	97.03
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.03
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	97.02
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	96.99
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	96.89
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	96.88
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	96.88
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	96.87
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	96.85
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	96.83
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	96.83
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	96.74
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	96.71
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	96.71
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	96.7
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	96.69
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	96.62
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.61
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	96.6
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	96.52
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	96.49
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	96.47
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	96.45
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	96.44
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	96.42
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	96.41
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	96.38
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	96.36
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	96.36
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	96.33
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	96.24
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	96.2
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	96.2
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	96.14
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	96.13
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	96.12
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	96.1
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	96.07
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	96.05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	96.03
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	95.99
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	95.99
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	95.98
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	95.96
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	95.96
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	95.94
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	95.92
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	95.92
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	95.84
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	95.83
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	95.77
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	95.73
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	95.65
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	95.62
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	95.57
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	95.55
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	95.54
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	95.5
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	95.42
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	95.41
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	95.05
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	95.04
2epa_A	72	Krueppel-like factor 10; transforming growth facto	95.01
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	94.99
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	94.88
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	94.83
2epa_A	72	Krueppel-like factor 10; transforming growth facto	94.81
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	94.79
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	94.7
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	94.59
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	94.51
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	94.41
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	94.4
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.31
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	94.3
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	94.14
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	93.74
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	93.71
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	93.32
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	92.65
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	91.68
3sho_A	187	Transcriptional regulator, RPIR family; structural	91.59
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	90.88
3h75_A	350	Periplasmic sugar-binding domain protein; protein	90.4
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	90.29
3l6u_A	293	ABC-type sugar transport system periplasmic compo;	89.88
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	89.84
3jy6_A	276	Transcriptional regulator, LACI family; NYSGXRC, P	89.81
3ksm_A	276	ABC-type sugar transport system, periplasmic COMP;	88.71
3o74_A	272	Fructose transport system repressor FRUR; dual tra	88.69
3etn_A	220	Putative phosphosugar isomerase involved in capsu	88.12
3tb6_A	298	Arabinose metabolism transcriptional repressor; tr	87.7
3l49_A	291	ABC sugar (ribose) transporter, periplasmic substr	87.69
1tjy_A	316	Sugar transport protein; protein-ligand complex, s	87.36
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	87.09
8abp_A	306	L-arabinose-binding protein; binding proteins; HET	87.07
3m9w_A	313	D-xylose-binding periplasmic protein; xylose bindi	87.0
2fn9_A	290	Ribose ABC transporter, periplasmic ribose-bindin;	86.93
2ioy_A	283	Periplasmic sugar-binding protein; ribose binding	86.5
3g1w_A	305	Sugar ABC transporter; sugar-binding protein, baci	86.46
3uug_A	330	Multiple sugar-binding periplasmic receptor CHVE;	86.33
2dri_A	271	D-ribose-binding protein; sugar transport; HET: RI	86.29
1gud_A	288	ALBP, D-allose-binding periplasmic protein; peripl	85.01
2fep_A	289	Catabolite control protein A; CCPA, transcriptiona	84.84
2rgy_A	290	Transcriptional regulator, LACI family; 11011J, NY	84.6
3dbi_A	338	Sugar-binding transcriptional regulator, LACI FAM;	84.54
3rot_A	297	ABC sugar transporter, periplasmic sugar binding;	84.54
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	84.52
3k4h_A	292	Putative transcriptional regulator; structural gen	84.14
3brq_A	296	HTH-type transcriptional regulator ASCG; transcrip	83.91
2fvy_A	309	D-galactose-binding periplasmic protein; periplasm	83.9
2vk2_A	306	YTFQ, ABC transporter periplasmic-binding protein	83.69
3d8u_A	275	PURR transcriptional regulator; APC91343.1, vibrio	83.54
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	83.18
2yva_A	196	DNAA initiator-associating protein DIAA; intermole	83.0
1jx6_A	342	LUXP protein; protein-ligand complex, signaling pr	82.37
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	82.13
2h3h_A	313	Sugar ABC transporter, periplasmic sugar-binding p	82.12
2l69_A	134	Rossmann 2X3 fold protein; structural genomics, no	81.73
3huu_A	305	Transcription regulator like protein; PSI-II, NYSG	81.24
1m3s_A	186	Hypothetical protein YCKF; structural genomics, PS	80.85
3e3m_A	355	Transcriptional regulator, LACI family; structural	80.63
3egc_A	291	Putative ribose operon repressor; structural genom	80.27

>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}

Probab=98.38  E-value=3.4e-07  Score=79.15  Aligned_cols=83  Identities=24%  Similarity=0.210  Sum_probs=65.7

Q ss_pred             HHHhcceEEEEeCC-------CchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHc-CCcEEEEcCC---CC
Q 014872          232 ELRRAGVFVKTVRD-------KPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDA-NLGTVVVGDS---NR  300 (417)
Q Consensus       232 ELkRAGV~VrtV~d-------KPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~-~v~TVVVGd~---~~  300 (417)
                      .|++.||.|++.+-       ...+.|.+|--.|.... ..++++||||.|+||+.+++.+|++ |.+++|+|-.   ..
T Consensus        69 ~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a-~~~d~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~~~~~s~  147 (165)
T 2qip_A           69 ILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIA-PDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQ  147 (165)
T ss_dssp             HHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHG-GGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEECGGGSCH
T ss_pred             HHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhh-ccCCEEEEEECChhHHHHHHHHHHHcCcEEEEEeCCCcChH
Confidence            56667888775432       23589999976666554 6799999999999999999999997 9999999963   24


Q ss_pred             ccccccccccchhhh
Q 014872          301 GLGQHADLWVPWIEV  315 (417)
Q Consensus       301 ~L~R~ADl~fSW~eV  315 (417)
                      .|.+.||-.+.++++
T Consensus       148 ~L~~~ad~fi~l~~~  162 (165)
T 2qip_A          148 TLIDCADNFVAIDDD  162 (165)
T ss_dssp             HHHHHSSEEEECSGG
T ss_pred             HHHHhCCEEEecchh
Confidence            788999988877664

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.87  E-value=3.6e-06  Score=50.50  Aligned_cols=29  Identities=28%  Similarity=0.638  Sum_probs=26.1

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      .||.|..||+.|.+...|.+|...+|..|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            48999999999999999999987888765

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.79  E-value=7.6e-06  Score=48.52  Aligned_cols=28  Identities=29%  Similarity=0.754  Sum_probs=24.4

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      .||.|.+||+.|.+...|.+|.+ +|..|
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~-~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLE-THDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH-TTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHH-HhccC
Confidence            68999999999999999999986 46543

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=97.73  E-value=1.5e-05  Score=50.31  Aligned_cols=30  Identities=27%  Similarity=0.476  Sum_probs=26.3

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      .||.|.+||+.|.+...|.+|.+ +|..|+.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~-~H~~~~~   30 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHIT-LHELLGE   30 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHH-HHTTTCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHH-HhCCCCC
Confidence            48999999999999999999975 6887653

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.72  E-value=1.4e-05  Score=47.41  Aligned_cols=28  Identities=32%  Similarity=0.806  Sum_probs=24.2

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      +||.|++||+.|.+...|..|.+. |..|
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~-h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRS-HTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHH-HSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH-hcCC
Confidence            489999999999999999999764 6544

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.72  E-value=1.2e-05  Score=55.29  Aligned_cols=34  Identities=29%  Similarity=0.734  Sum_probs=27.6

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQK  186 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~K  186 (417)
                      ..+||.|.+||+.|.....|++|.+.+|..|...
T Consensus         4 ~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~~   37 (48)
T 3iuf_A            4 RDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEG   37 (48)
T ss_dssp             TTSCEECTTTCCEESSHHHHHHHHHHSSCC----
T ss_pred             CCcCEECCCcCcccCCHHHHHHHhhhhcCCCCCC
Confidence            3579999999999999999999999889877654

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.71  E-value=1.4e-05  Score=53.00  Aligned_cols=33  Identities=30%  Similarity=0.649  Sum_probs=29.1

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      ...||.|.+||+.|.+...|.+|.+.+|..|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~   41 (47)
T 2epx_A            9 GKKPYECIECGKAFIQNTSLIRHWRYYHTGEKP   41 (47)
T ss_dssp             CCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCS
T ss_pred             CCCCEECCccCchhCChHHHHHHhHhhcCCCCC
Confidence            467999999999999999999999878987653

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.70  E-value=1.5e-05  Score=50.24  Aligned_cols=30  Identities=23%  Similarity=0.597  Sum_probs=25.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      ...||.|++||+.|.+...|.+|.+ +|..|
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2els_A            6 SGKIFTCEYCNKVFKFKHSLQAHLR-IHTNE   35 (36)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHH-HHCCC
T ss_pred             CCCCEECCCCCceeCCHHHHHHHHH-HhCCC
Confidence            4579999999999999999999976 57654

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.68  E-value=1.7e-05  Score=49.18  Aligned_cols=31  Identities=19%  Similarity=0.525  Sum_probs=26.2

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.....|.+|.+ +|..|+
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~k   34 (35)
T 2elx_A            4 GSSGYVCALCLKKFVSSIRLRSHIR-EVHGAA   34 (35)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHH-HTSCTT
T ss_pred             CCCCeECCCCcchhCCHHHHHHHHH-HHcCCC
Confidence            3579999999999999999999976 566553

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.67  E-value=2.3e-05  Score=49.04  Aligned_cols=30  Identities=33%  Similarity=0.660  Sum_probs=25.6

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|
T Consensus         6 ~~~~~~C~~C~k~f~~~~~l~~H~~-~H~~e   35 (36)
T 2elr_A            6 SGKTHLCDMCGKKFKSKGTLKSHKL-LHTAD   35 (36)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHHH-HHSSC
T ss_pred             CCCCeecCcCCCCcCchHHHHHHHH-HhcCC
Confidence            4579999999999999999999975 56544

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.67  E-value=1.9e-05  Score=49.42  Aligned_cols=30  Identities=27%  Similarity=0.598  Sum_probs=25.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elt_A            6 SGKPYKCPQCSYASAIKANLNVHLR-KHTGE   35 (36)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHH-HHTCC
T ss_pred             CCCCCCCCCCCcccCCHHHHHHHHH-HccCC
Confidence            3579999999999999999999975 57654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.66  E-value=1.6e-05  Score=47.31  Aligned_cols=28  Identities=25%  Similarity=0.490  Sum_probs=24.4

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      .||.|+.||+.|.+...|..|.+ +|..|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHIL-LHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHT-GGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHH-HhcCC
Confidence            48999999999999999999986 57644

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.66  E-value=1.9e-05  Score=46.42  Aligned_cols=28  Identities=29%  Similarity=0.511  Sum_probs=24.5

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      +||.|+.||+.|.+...|..|.+ +|..|
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~-~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLK-IHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHH-HHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHH-HhccC
Confidence            48999999999999999999985 57654

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.65  E-value=1.9e-05  Score=49.82  Aligned_cols=30  Identities=33%  Similarity=0.636  Sum_probs=25.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      ...||.|.+||+.|.....|.+|.+ +|..|
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elv_A            6 SGLLYDCHICERKFKNELDRDRHML-VHGDK   35 (36)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHT-TTSTT
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHH-HhcCC
Confidence            4579999999999999999999976 47654

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.64  E-value=2.3e-05  Score=46.24  Aligned_cols=28  Identities=36%  Similarity=0.823  Sum_probs=24.4

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      +||.|+.||+.|.+...|..|.+ +|..|
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~-~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLR-IHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHH-HHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHH-HhcCC
Confidence            48999999999999999999975 57654

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.77  E-value=8.4e-06  Score=48.86  Aligned_cols=29  Identities=28%  Similarity=0.612  Sum_probs=25.0

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      .||.|..||+.|.+...|..|.+ +|..|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~-~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVR-QHTGEK   29 (29)
Confidence            48999999999999999999985 676653

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=97.60  E-value=2.7e-05  Score=48.65  Aligned_cols=31  Identities=23%  Similarity=0.597  Sum_probs=26.1

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         4 ~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~~   34 (35)
T 1srk_A            4 GKRPFVCRICLSAFTTKANCARHLK-VHTDTL   34 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHG-GGTSCC
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHH-HcCCCC
Confidence            3579999999999999999999975 576543

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.59  E-value=2.9e-05  Score=49.19  Aligned_cols=30  Identities=27%  Similarity=0.391  Sum_probs=25.8

Q ss_pred             CCCCeecccCCCCCCCh-HHHHHHHHHhhhhh
Q 014872          153 PNDPYICGVCGRKCKTN-LDLKKHFKQLHERE  183 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~-~kL~kHFKQLHERE  183 (417)
                      ...||.|++||+.|.+. ..|.+|.+ +|..|
T Consensus         6 ~~k~~~C~~C~k~f~~~~~~L~~H~~-~H~~~   36 (37)
T 2elp_A            6 SGRAMKCPYCDFYFMKNGSDLQRHIW-AHEGV   36 (37)
T ss_dssp             CCCCEECSSSSCEECSSCHHHHHHHH-HHHTC
T ss_pred             CCCCeECCCCChhhccCHHHHHHHHH-hcCCC
Confidence            45799999999999999 99999975 57654

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.57  E-value=2.5e-05  Score=45.82  Aligned_cols=25  Identities=32%  Similarity=0.798  Sum_probs=21.6

Q ss_pred             CeecccCCCCCCChHHHHHHHHHhhh
Q 014872          156 PYICGVCGRKCKTNLDLKKHFKQLHE  181 (417)
Q Consensus       156 PY~C~VCGRkf~T~~kL~kHFKQLHE  181 (417)
                      ||.|.+||+.|.+...|.+|.+ +|.
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~-~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQR-VHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGG-GTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHH-HcC
Confidence            6999999999999999999975 454

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.57  E-value=3.4e-05  Score=48.60  Aligned_cols=30  Identities=27%  Similarity=0.681  Sum_probs=25.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elq_A            6 SGKPFKCSLCEYATRSKSNLKAHMN-RHSTE   35 (36)
T ss_dssp             CCCSEECSSSSCEESCHHHHHHHHH-HSSTT
T ss_pred             CCCCccCCCCCchhCCHHHHHHHHH-HhccC
Confidence            4579999999999999999999975 57654

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.57  E-value=3.8e-05  Score=51.01  Aligned_cols=31  Identities=32%  Similarity=0.693  Sum_probs=27.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2ep3_A            9 GEKPYRCAECGKAFTDRSNLFTHQK-IHTGEK   39 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHT-TTTTSC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHH-HcCCCC
Confidence            4579999999999999999999985 687664

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.55  E-value=3.9e-05  Score=51.09  Aligned_cols=32  Identities=31%  Similarity=0.626  Sum_probs=27.2

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~   40 (46)
T 2yto_A            9 GEKPYKCSDCGKAFTRKSGLHIHQQ-SHTGERH   40 (46)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHH-HHTCCCB
T ss_pred             CCCCEECcccCCccCCHhHHHHHHH-HcCCCCC
Confidence            4579999999999999999999975 5876643

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=97.55  E-value=2.7e-05  Score=50.20  Aligned_cols=31  Identities=32%  Similarity=0.796  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ++.||.|.+||+.|.+...|..|.+ +|..|+
T Consensus         3 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   33 (39)
T 1njq_A            3 PPRSYTCSFCKREFRSAQALGGHMN-VHRRDR   33 (39)
T ss_dssp             CSSSEECTTTCCEESSHHHHHHHHH-TTCCSC
T ss_pred             CCCceECCCCCcccCCHHHHHHHHH-HcCCCc
Confidence            4579999999999999999999975 687665

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.55  E-value=2.6e-05  Score=54.23  Aligned_cols=34  Identities=38%  Similarity=0.736  Sum_probs=30.3

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQK  186 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~K  186 (417)
                      ..+||.|.+||+.|.+...|.+|.+++|..|+.-
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~   42 (54)
T 2eps_A            9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPH   42 (54)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCc
Confidence            4579999999999999999999999999877643

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.69  E-value=1.2e-05  Score=48.07  Aligned_cols=28  Identities=32%  Similarity=0.740  Sum_probs=24.5

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      .||.|..||+.|.+...|.+|.+ +|..|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~-~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVR-IHTGE   29 (30)
Confidence            58999999999999999999976 46654

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=97.54  E-value=5.3e-05  Score=50.43  Aligned_cols=31  Identities=29%  Similarity=0.676  Sum_probs=27.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|++||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (46)
T 2emk_A            9 GEKPYECKECGKAFSQTTHLIQHQR-VHTGEK   39 (46)
T ss_dssp             SSCSCBCSSSCCBCSCHHHHHHHHH-HHSSCC
T ss_pred             CCCceECCCCCchhCCHHHHHHHHH-HcCCCC
Confidence            4579999999999999999999986 587664

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.53  E-value=2.9e-05  Score=49.04  Aligned_cols=31  Identities=26%  Similarity=0.498  Sum_probs=26.2

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~-~h~~~k   36 (37)
T 2elo_A            6 SGRSYSCPVCEKSFSEDRLIKSHIK-TNHPEV   36 (37)
T ss_dssp             CCCCCEETTTTEECSSHHHHHHHHH-HHCSSC
T ss_pred             CCCCcCCCCCCCccCCHHHHHHHHH-HHcCCC
Confidence            4579999999999999999999986 466553

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.52  E-value=3.2e-05  Score=50.28  Aligned_cols=31  Identities=26%  Similarity=0.599  Sum_probs=27.2

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      .++||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         8 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   38 (42)
T 2en2_A            8 GEKPYKCETCGARFVQVAHLRAHVL-IHTGSG   38 (42)
T ss_dssp             SSCSEECTTTCCEESSHHHHHHHTH-HHHSCC
T ss_pred             CCCCEeCCCcChhhCCHHHHHHHHH-HcCCCC
Confidence            4679999999999999999999986 787664

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.52  E-value=5.3e-05  Score=44.86  Aligned_cols=23  Identities=22%  Similarity=0.772  Sum_probs=21.7

Q ss_pred             CCeecccCCCCCCChHHHHHHHH
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFK  177 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFK  177 (417)
                      +||.|..||+.|.+...|.+|.+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLR   24 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             cCccCCCcChhhCCHHHHHHHHH
Confidence            68999999999999999999975

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=97.51  E-value=5.1e-05  Score=47.87  Aligned_cols=28  Identities=29%  Similarity=0.430  Sum_probs=24.3

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHE  181 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHE  181 (417)
                      ..+||.|++||+.|.+...|.+|.+ +|.
T Consensus         8 ~~k~~~C~~C~k~f~~~~~l~~H~~-~H~   35 (37)
T 1p7a_A            8 GIKPFQCPDCDRSFSRSDHLALHRK-RHM   35 (37)
T ss_dssp             CSSSBCCTTTCCCBSSHHHHHHHHG-GGT
T ss_pred             CCCCccCCCCCcccCcHHHHHHHHH-Hhc
Confidence            4579999999999999999999975 454

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.50  E-value=3.1e-05  Score=49.72  Aligned_cols=30  Identities=30%  Similarity=0.455  Sum_probs=26.2

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHER  182 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHER  182 (417)
                      ..+||.|..||+.|.+...|.+|..++|..
T Consensus         6 ~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            6 SGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             SSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            357999999999999999999996677864

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.49  E-value=5.7e-05  Score=50.13  Aligned_cols=31  Identities=29%  Similarity=0.718  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2eml_A            9 GEKPYECSVCGKAFSHRQSLSVHQR-IHSGKK   39 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHG-GGSSCC
T ss_pred             CCCCeeCCCcCCccCCHHHHHHHHH-HhcCCC
Confidence            4579999999999999999999975 577654

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.48  E-value=5.5e-05  Score=50.20  Aligned_cols=32  Identities=31%  Similarity=0.607  Sum_probs=27.6

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~   40 (46)
T 2en3_A            9 GEKPFQCKECGMNFSWSCSLFKHLR-SHERTDP   40 (46)
T ss_dssp             CCCSEECSSSCCEESSSHHHHHHHH-HHHHSCC
T ss_pred             CCCCeeCcccChhhCCHHHHHHHHH-HhCCCCC
Confidence            4689999999999999999999984 6877653

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.48  E-value=4.9e-05  Score=49.23  Aligned_cols=31  Identities=29%  Similarity=0.563  Sum_probs=26.7

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   37 (42)
T 2yte_A            7 GEKPYSCAECKETFSDNNRLVQHQK-MHTVKS   37 (42)
T ss_dssp             SCCSCBCTTTCCBCSSHHHHHHHHH-HTSCCS
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHH-HhCCCC
Confidence            4579999999999999999999976 576654

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.48  E-value=4.7e-05  Score=50.44  Aligned_cols=31  Identities=26%  Similarity=0.408  Sum_probs=27.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (44)
T 2epv_A            9 GEKPYECNECGKAFIWKSLLIVHER-THAGVS   39 (44)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHG-GGSSCS
T ss_pred             CCcCeECCCCCcccCchHHHHHHHh-HhcCCC
Confidence            4579999999999999999999976 687664

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=97.47  E-value=6.1e-05  Score=49.99  Aligned_cols=31  Identities=32%  Similarity=0.663  Sum_probs=26.7

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2ema_A            9 GEKRYKCNECGKVFSRNSQLSQHQK-IHTGEK   39 (46)
T ss_dssp             TSCCEECSSSCCEESSHHHHHHHHT-GGGCCC
T ss_pred             CCcCcCCCCCcchhCCHHHHHHHHH-hcCCCC
Confidence            4579999999999999999999975 587664

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.46  E-value=8.7e-05  Score=49.37  Aligned_cols=32  Identities=31%  Similarity=0.733  Sum_probs=27.6

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~   40 (46)
T 2emz_A            9 GERPFKCNECGKGFGRRSHLAGHLR-LHSREKS   40 (46)
T ss_dssp             CCCSCCCSSSCCCCSSHHHHHHHHH-HHHHTTC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHH-HhCCCCC
Confidence            4579999999999999999999976 6877653

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=97.46  E-value=4.1e-05  Score=56.90  Aligned_cols=36  Identities=22%  Similarity=0.567  Sum_probs=22.3

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRM  191 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnrL  191 (417)
                      +||.|.+||+.|.+...|.+|.+ +|..|+.=....+
T Consensus         3 Kpy~C~~C~k~F~~~~~L~~H~~-~Ht~ekp~~C~~C   38 (60)
T 4gzn_C            3 RPFFCNFCGKTYRDASGLSRHRR-AHLGYRPRSCPEC   38 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH-HHHTCCCEECTTT
T ss_pred             CCccCCCCCCEeCCHHHHHHHHH-HhCCCcCeECCCC
Confidence            56666666666666666666654 4666655444443

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=97.45  E-value=6.4e-05  Score=48.64  Aligned_cols=31  Identities=26%  Similarity=0.605  Sum_probs=26.6

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         8 ~~~~~~C~~C~k~f~~~~~l~~H~~-~H~~~k   38 (42)
T 2epc_A            8 GETPYLCGQCGKSFTQRGSLAVHQR-SCSQSG   38 (42)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHH-HTTCCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHhh-hcCCCC
Confidence            4679999999999999999999975 576654

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.45  E-value=5.6e-05  Score=44.66  Aligned_cols=27  Identities=26%  Similarity=0.557  Sum_probs=23.4

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHER  182 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHER  182 (417)
                      +||.|..||+.|.+...|..|.+. |..
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~-h~~   27 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKT-KHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH-HTS
T ss_pred             CCccCCCCCCccCCHHHHHHHHHH-Hcc
Confidence            479999999999999999999874 443

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.44  E-value=4.7e-05  Score=50.54  Aligned_cols=31  Identities=35%  Similarity=0.757  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2emg_A            9 GENPFICSECGKVFTHKTNLIIHQK-IHTGER   39 (46)
T ss_dssp             SCCSCBCTTTCCBCSSHHHHHHHHT-TTSCCC
T ss_pred             CCCCEECCccCcccCCHHHHHHHHH-HhCCCC
Confidence            4579999999999999999999975 687664

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.43  E-value=7.8e-05  Score=49.61  Aligned_cols=31  Identities=35%  Similarity=0.729  Sum_probs=27.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+. |..|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k   39 (46)
T 2eoo_A            9 GERPYGCNECGKNFGRHSHLIEHLKR-HFREK   39 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHH-HHSTT
T ss_pred             CCCCEEccccCcccCCHHHHHHHHHH-HcCCC
Confidence            46899999999999999999999764 87665

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.43  E-value=6.2e-05  Score=49.79  Aligned_cols=31  Identities=29%  Similarity=0.643  Sum_probs=27.1

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2ep1_A            9 GEKPYECSDCGKSFIKKSQLHVHQR-IHTGEN   39 (46)
T ss_dssp             SCCSSCCSSSCCCCSSHHHHHHHHG-GGSSSC
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHH-HhCCCC
Confidence            4679999999999999999999986 587664

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.43  E-value=4.9e-05  Score=45.51  Aligned_cols=23  Identities=26%  Similarity=0.813  Sum_probs=21.6

Q ss_pred             CCeecccCCCCCCChHHHHHHHH
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFK  177 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFK  177 (417)
                      +||.|++||+.|.....|.+|.+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            68999999999999999999975

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.42  E-value=5.2e-05  Score=49.55  Aligned_cols=31  Identities=29%  Similarity=0.626  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (44)
T 2en7_A            9 GMKPYVCNECGKAFRSKSYLIIHTR-THTGES   39 (44)
T ss_dssp             SSSSSCCTTTCCCCSSHHHHHHHHT-TTCCSS
T ss_pred             CCcCeECCCCCCccCCHHHHHHHhh-hcCCCC
Confidence            4579999999999999999999984 687654

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=97.42  E-value=4.3e-05  Score=60.34  Aligned_cols=30  Identities=20%  Similarity=0.454  Sum_probs=18.4

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      ++||.|.+||+.|.+...|.+|.+.+|..|
T Consensus        54 ~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           54 AQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             SSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            355666666666666666666666666554

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.42  E-value=6.9e-05  Score=49.73  Aligned_cols=31  Identities=32%  Similarity=0.692  Sum_probs=27.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (46)
T 2enf_A            9 GEKPYKCNECGKVFTQNSHLVRHRG-IHTGEK   39 (46)
T ss_dssp             CCCSCBCSSSCCBCSSHHHHHHHHT-TTTTSS
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHH-hhCCCC
Confidence            4689999999999999999999964 687664

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.42  E-value=4.9e-05  Score=50.63  Aligned_cols=31  Identities=32%  Similarity=0.806  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|++||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2eoz_A            9 GEKPYSCNVCGKAFVLSAHLNQHLR-VHTQET   39 (46)
T ss_dssp             SCCSEEETTTTEEESSHHHHHHHHH-HHSSCC
T ss_pred             CCCCeECcccChhhCCHHHHHHHHH-HhCCCC
Confidence            4679999999999999999999975 587664

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=97.42  E-value=8.5e-05  Score=49.43  Aligned_cols=31  Identities=26%  Similarity=0.678  Sum_probs=27.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (46)
T 2emj_A            9 GEKPFECAECGKSFSISSQLATHQR-IHTGEK   39 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHH-HHTTSC
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHH-HhCCCC
Confidence            4689999999999999999999975 587664

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.41  E-value=7.3e-05  Score=44.29  Aligned_cols=23  Identities=30%  Similarity=0.982  Sum_probs=21.7

Q ss_pred             CCeecccCCCCCCChHHHHHHHH
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFK  177 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFK  177 (417)
                      +||.|.+||+.|.+...|.+|.+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHT
T ss_pred             cCccCCCCCcccCCHHHHHHHHH
Confidence            68999999999999999999975

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.41  E-value=6.3e-05  Score=49.91  Aligned_cols=31  Identities=29%  Similarity=0.723  Sum_probs=27.1

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2eq1_A            9 GEKPYKCNECGKAFRAHSNLTTHQV-IHTGEK   39 (46)
T ss_dssp             CSCCCCCTTTTCCCSSHHHHHHHHT-TTCCSC
T ss_pred             CCCCeECCcCChhhCCHHHHHHHHH-HhCCCC
Confidence            4579999999999999999999976 687664

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.41  E-value=6.1e-05  Score=49.97  Aligned_cols=31  Identities=26%  Similarity=0.671  Sum_probs=27.1

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2epz_A            9 GEKPFDCIDCGKAFSDHIGLNQHRR-IHTGEK   39 (46)
T ss_dssp             CCCSBCCTTTCCCBSSHHHHHHHHT-TTTTCC
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHH-HhCCCC
Confidence            4679999999999999999999976 687664

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.41  E-value=5.8e-05  Score=49.93  Aligned_cols=31  Identities=29%  Similarity=0.639  Sum_probs=27.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2eow_A            9 GEKPYKCNECGKAFRARSSLAIHQA-THSGEK   39 (46)
T ss_dssp             CCCCEECTTSCCEESSHHHHHHHHH-HHCCCS
T ss_pred             CCCCeeccccCChhcCHHHHHHHHH-HcCCCC
Confidence            4689999999999999999999986 587664

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.41  E-value=4.7e-05  Score=50.71  Aligned_cols=31  Identities=29%  Similarity=0.697  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (46)
T 2enh_A            9 GEKPYECDVCRKAFSHHASLTQHQR-VHSGEK   39 (46)
T ss_dssp             CSSSCBCTTTCCBCSSSHHHHHHGG-GSCCSC
T ss_pred             CCCCcCCCCcCchhCCHHHHHHHHH-HhCCCC
Confidence            4579999999999999999999975 687664

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.41  E-value=8.5e-05  Score=49.26  Aligned_cols=31  Identities=42%  Similarity=0.838  Sum_probs=27.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (46)
T 2emh_A            9 GERPYICTVCGKAFTDRSNLIKHQK-IHTGEK   39 (46)
T ss_dssp             CCCSEECTTTCCEESSHHHHHHHHH-HHHCSS
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHH-hcCCCC
Confidence            4589999999999999999999975 687664

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.41  E-value=4.5e-05  Score=49.72  Aligned_cols=31  Identities=29%  Similarity=0.741  Sum_probs=26.6

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         8 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   38 (42)
T 2eos_A            8 GEKPYPCEICGTRFRHLQTLKSHLR-IHTGSG   38 (42)
T ss_dssp             SSCCBCCSSSCCCBSSHHHHHHHTT-TTSCCS
T ss_pred             CCCCEECCCCCCccCCHHHHHHHHH-hcCCCC
Confidence            4579999999999999999999976 676554

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.40  E-value=7.5e-05  Score=49.87  Aligned_cols=31  Identities=32%  Similarity=0.660  Sum_probs=27.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2ytm_A            9 GEKPYKCMECGKAFGDNSSCTQHQR-LHTGQR   39 (46)
T ss_dssp             SCCSSSBTTTTBCCSSHHHHHHHHH-HHHSCC
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHH-HcCCCC
Confidence            4679999999999999999999986 577664

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.40  E-value=8.8e-05  Score=49.20  Aligned_cols=31  Identities=29%  Similarity=0.678  Sum_probs=26.7

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+. |..|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k   39 (46)
T 2emy_A            9 GENPYECHECGKAFSRKYQLISHQRT-HAGEK   39 (46)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHH-HTTSC
T ss_pred             CCcCcCCCCCCcccCcHHHHHHHHHH-cCCCC
Confidence            45799999999999999999999764 77654

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.40  E-value=7.9e-05  Score=49.44  Aligned_cols=31  Identities=32%  Similarity=0.661  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~   39 (46)
T 2em3_A            9 GEKPYECKVCSKAFTQKAHLAQHQK-THTGEK   39 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHH-HHCCCC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHH-HhCCCC
Confidence            4679999999999999999999986 587664

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.40  E-value=7.2e-05  Score=49.45  Aligned_cols=31  Identities=23%  Similarity=0.416  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|. ++|..|+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~k   39 (46)
T 2en8_A            9 GEKSHTCDECGKNFCYISALRIHQ-RVHMGEK   39 (46)
T ss_dssp             CCSSEECTTTCCEESSHHHHHHHH-TTTCCSC
T ss_pred             CCCCeECCCcCcccCCHHHHHHHH-HHhCCCC
Confidence            467999999999999999999997 4687664

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.40  E-value=6.8e-05  Score=49.75  Aligned_cols=31  Identities=32%  Similarity=0.804  Sum_probs=27.1

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|++||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2ytk_A            9 GEKPYKCNECGKVFTQNSHLTNHWR-IHTGEK   39 (46)
T ss_dssp             SSCSEECSSSCCEESSHHHHHHHHH-HHSSSS
T ss_pred             CCCCEeCCcCCCccCCHHHHHHHHH-HHCCCC
Confidence            4689999999999999999999986 677654

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.39  E-value=6.9e-05  Score=49.87  Aligned_cols=31  Identities=32%  Similarity=0.724  Sum_probs=27.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~   39 (46)
T 2elz_A            9 VEKPYKCEDCGKGYNRRLNLDMHQR-VHMGEK   39 (46)
T ss_dssp             CCSSCBCSSSCCBCSSHHHHHHHGG-GGGSCC
T ss_pred             CCCCeeCcccCchhCCHHHHHHHHH-hcCCCC
Confidence            4679999999999999999999976 687654

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.39  E-value=7.2e-05  Score=45.78  Aligned_cols=28  Identities=36%  Similarity=0.680  Sum_probs=24.5

Q ss_pred             CCeecc--cCCCCCCChHHHHHHHHHhhhhh
Q 014872          155 DPYICG--VCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       155 ~PY~C~--VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      .||.|.  .||+.|.+...|.+|.+ +|..|
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKK-SHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHG-GGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHH-HccCC
Confidence            689999  89999999999999976 47654

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=97.39  E-value=5e-05  Score=56.45  Aligned_cols=32  Identities=22%  Similarity=0.587  Sum_probs=27.1

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|+.|.+
T Consensus        29 ~ekp~~C~~C~k~F~~~~~L~~H~~-~Htgepa   60 (60)
T 4gzn_C           29 GYRPRSCPECGKCFRDQSEVNRHLK-VHQNKPA   60 (60)
T ss_dssp             TCCCEECTTTCCEESSHHHHHHHGG-GGSCC--
T ss_pred             CCcCeECCCCCCCcCCHHHHHHHhC-ccCCCCC
Confidence            4589999999999999999999976 7987753

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.50  E-value=2.5e-05  Score=45.98  Aligned_cols=24  Identities=29%  Similarity=0.884  Sum_probs=21.8

Q ss_pred             CCeecccCCCCCCChHHHHHHHHH
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQ  178 (417)
                      +||.|+.||+.|.+...|.+|.+.
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            489999999999999999999763

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.38  E-value=7.6e-05  Score=49.68  Aligned_cols=32  Identities=28%  Similarity=0.536  Sum_probs=27.3

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~   40 (46)
T 2eoh_A            9 GKKPYECKECRKTFIQIGHLNQHKR-VHTGERS   40 (46)
T ss_dssp             CSCSCCCSSSCCCCSSHHHHHHHHH-HCSSCCS
T ss_pred             CCCCcCCCCcCchhCCHHHHHHHHH-HhCCCCC
Confidence            4579999999999999999999975 6876653

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.38  E-value=8.5e-05  Score=49.44  Aligned_cols=31  Identities=32%  Similarity=0.771  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2ytt_A            9 GEKPYQCSECGKSFSGSYRLTQHWI-THTREK   39 (46)
T ss_dssp             CCCTTCCSSSCCCCSSHHHHHHHHT-HHHHCC
T ss_pred             CCCCeeCCCCCcccCCHHHHHHHHH-HcCCCC
Confidence            4679999999999999999999975 487664

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=97.37  E-value=7.6e-05  Score=51.73  Aligned_cols=31  Identities=19%  Similarity=0.547  Sum_probs=27.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus        21 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   51 (54)
T 1yui_A           21 SEQPATCPICYAVIRQSRNLRRHLE-LRHFAK   51 (54)
T ss_dssp             SSCCEECTTTCCEESSHHHHHHHHH-HHTTTS
T ss_pred             CCCCccCCCCCcccCCHHHHHHHHH-HhccCC
Confidence            3579999999999999999999986 687664

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.37  E-value=5.7e-05  Score=50.29  Aligned_cols=31  Identities=26%  Similarity=0.552  Sum_probs=27.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (46)
T 2ytp_A            9 GERHYECSECGKAFARKSTLIMHQR-IHTGEK   39 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHT-TTSCCC
T ss_pred             CCCCeECCcCCcccCCHHHHHHHHH-HhCCCC
Confidence            4689999999999999999999975 687664

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=97.37  E-value=8e-05  Score=49.56  Aligned_cols=31  Identities=32%  Similarity=0.654  Sum_probs=27.1

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2ely_A            9 GEKPFKCVECGKGFSRRSALNVHHK-LHTGEK   39 (46)
T ss_dssp             CCCSBCCSSSCCCBSSTTHHHHHHH-HHSCCS
T ss_pred             CCCCcccCccCcccCCHHHHHHHHH-HcCCCC
Confidence            4579999999999999999999976 587664

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.37  E-value=8.1e-05  Score=49.70  Aligned_cols=31  Identities=19%  Similarity=0.400  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (46)
T 2eom_A            9 GERGHRCSDCGKFFLQASNFIQHRR-IHTGEK   39 (46)
T ss_dssp             CCSSCCCSSSCCCCSSHHHHHHHHH-HHSSCC
T ss_pred             CCCCcCCCCCCCeeCChHHHHHHHH-HhCCCC
Confidence            4579999999999999999999976 587664

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.37  E-value=9.2e-05  Score=48.33  Aligned_cols=31  Identities=29%  Similarity=0.567  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (44)
T 2eof_A            9 GEKPYECNECQKAFNTKSNLMVHQR-THTGES   39 (44)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHH-HTTTSS
T ss_pred             CCCCeECCCCCcccCCHhHHHHHHH-HhCCCC
Confidence            4679999999999999999999986 587664

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.36  E-value=8.7e-05  Score=49.05  Aligned_cols=31  Identities=29%  Similarity=0.712  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2eor_A            9 GEKPYNCEECGKAFIHDSQLQEHQR-IHTGEK   39 (46)
T ss_dssp             CCCSEECTTTCCEESSHHHHHHHHH-HHHSCC
T ss_pred             CCcCccCCCCCCCcCCHHHHHHHHH-hcCCCC
Confidence            4579999999999999999999975 587664

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.36  E-value=7.2e-05  Score=49.18  Aligned_cols=31  Identities=26%  Similarity=0.535  Sum_probs=26.7

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (44)
T 2yu5_A            9 GENPFKCSKCDRVFTQRNYLVQHER-THARKS   39 (44)
T ss_dssp             CCCSEECSSSSCEESSSHHHHHHHH-HCCCCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHhH-hcCCCC
Confidence            4579999999999999999999976 576654

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.35  E-value=7e-05  Score=49.68  Aligned_cols=31  Identities=29%  Similarity=0.744  Sum_probs=27.1

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2ep2_A            9 GEKPYECSICGKSFTKKSQLHVHQQ-IHTGEK   39 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHH-TTSSCC
T ss_pred             CCcCcCCCCCCcccCCHHHHHHHHH-HhCCCC
Confidence            4689999999999999999999976 687654

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.35  E-value=7e-05  Score=49.67  Aligned_cols=31  Identities=26%  Similarity=0.565  Sum_probs=26.7

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (46)
T 2emi_A            9 GERHYECSECGKAFIQKSTLSMHQR-IHRGEK   39 (46)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHG-GGCSCC
T ss_pred             CCCCCCCCCCCcccCCHHHHHHHHh-HhCCCC
Confidence            4579999999999999999999965 587654

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.35  E-value=9.3e-05  Score=49.24  Aligned_cols=31  Identities=19%  Similarity=0.482  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (46)
T 2en9_A            9 GKKLFKCNECKKTFTQSSSLTVHQR-IHTGEK   39 (46)
T ss_dssp             SSCCCBCTTTCCBCSSHHHHHHHHH-HHTSSC
T ss_pred             CCCCEECCccCcccCCHHHHHHHHH-HcCCCC
Confidence            4579999999999999999999975 587664

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.35  E-value=6.9e-05  Score=48.59  Aligned_cols=31  Identities=23%  Similarity=0.475  Sum_probs=26.6

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|++||+.|.+...|.+|.+ +|..|+
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   37 (41)
T 2ept_A            7 GQRVYECQECGKSFRQKGSLTLHER-IHTGSG   37 (41)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHGG-GCCCCS
T ss_pred             CCCCeECCCCCCCcCCHHHHHHHHH-HhCCCC
Confidence            4579999999999999999999965 687654

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.35  E-value=8.9e-05  Score=48.74  Aligned_cols=31  Identities=23%  Similarity=0.497  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   37 (44)
T 2emx_A            7 GEKPFGCSCCEKAFSSKSYLLVHQQ-THAEEK   37 (44)
T ss_dssp             SCCCEECSSSSCEESSHHHHHHHHH-HHTSSC
T ss_pred             CCcCccCCCCCcccCCHHHHHHHHH-HhCCCC
Confidence            4579999999999999999999976 587664

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.35  E-value=9.6e-05  Score=49.16  Aligned_cols=31  Identities=29%  Similarity=0.732  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2yth_A            9 GEKPFQCEECGKRFTQNSHLHSHQR-VHTGEK   39 (46)
T ss_dssp             CSSSBCCSSSCCCBSSHHHHHHHGG-GGTTCC
T ss_pred             CCcCCCCCCCCcccCCHHHHHHHHH-hcCCCC
Confidence            4579999999999999999999964 687664

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.35  E-value=6.5e-05  Score=49.85  Aligned_cols=32  Identities=31%  Similarity=0.682  Sum_probs=27.2

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      ..+||.|.+||+.|.+...|.+|. .+|..|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~   40 (46)
T 2yti_A            9 GEKPYKCNECGKVFTQNSHLARHR-GIHTGEKP   40 (46)
T ss_dssp             CCCTTCCSSSCCCCSSHHHHHHHH-TTTSCSCC
T ss_pred             CCcCeECCCCCcccCChhHHHHHh-HhcCCCCC
Confidence            468999999999999999999996 46876643

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=97.35  E-value=7.3e-05  Score=49.61  Aligned_cols=31  Identities=19%  Similarity=0.378  Sum_probs=27.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|++||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~   39 (46)
T 2em0_A            9 GEKTWKCRECDMCFSQASSLRLHQN-VHVGEK   39 (46)
T ss_dssp             CCCCCCCSSSCCCCSSHHHHHHHGG-GGSSSS
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHH-HcCCCC
Confidence            4689999999999999999999975 487665

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.35  E-value=0.0001  Score=49.08  Aligned_cols=32  Identities=28%  Similarity=0.638  Sum_probs=27.4

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      ...||.|.+||+.|.+...|.+|. ++|..|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~   40 (46)
T 2em6_A            9 GEKCYKCDVCGKEFSQSSHLQTHQ-RVHTGEKP   40 (46)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHH-TTTSSSCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHH-HHcCCCCC
Confidence            468999999999999999999996 47876653

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.35  E-value=6.2e-05  Score=50.27  Aligned_cols=31  Identities=35%  Similarity=0.791  Sum_probs=27.1

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2eon_A            9 GEKPYKCQVCGKAFRVSSHLVQHHS-VHSGER   39 (46)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHTT-TTTSCC
T ss_pred             CCcccCCCCCCcccCcHHHHHHHHH-hcCCCC
Confidence            4689999999999999999999975 687664

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.34  E-value=0.0001  Score=48.66  Aligned_cols=31  Identities=35%  Similarity=0.647  Sum_probs=26.7

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2eov_A            9 GEKPYKCSDCGKSFTWKSRLRIHQK-CHTGER   39 (46)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHHH-HHSCCS
T ss_pred             CCCCccCCccChhhCCHHHHHHHHH-hcCCCC
Confidence            4579999999999999999999975 687654

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.33  E-value=0.00011  Score=48.44  Aligned_cols=31  Identities=26%  Similarity=0.418  Sum_probs=26.7

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (44)
T 2eou_A            9 AKTTSECQECGKIFRHSSLLIEHQA-LHAGES   39 (44)
T ss_dssp             SSCCCCCTTTCCCCSSHHHHHHHHH-HHTTSC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHH-HHCCCC
Confidence            4579999999999999999999975 577654

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=97.33  E-value=7.5e-05  Score=48.50  Aligned_cols=31  Identities=29%  Similarity=0.617  Sum_probs=26.6

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   37 (42)
T 2el5_A            7 GENPYECSECGKAFNRKDQLISHQR-THAGES   37 (42)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHG-GGCCCC
T ss_pred             CCCCccCCCcChhhCCHHHHHHHHH-hcCCCC
Confidence            4579999999999999999999975 576654

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.33  E-value=6.8e-05  Score=49.91  Aligned_cols=31  Identities=26%  Similarity=0.545  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (46)
T 2emf_A            9 GGKHFECTECGKAFTRKSTLSMHQK-IHTGEK   39 (46)
T ss_dssp             SSCCEECSSSCCEESCHHHHHHHGG-GTSCSS
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHH-HhCCCC
Confidence            4689999999999999999999976 577654

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.33  E-value=0.00013  Score=48.26  Aligned_cols=31  Identities=19%  Similarity=0.490  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   37 (43)
T 2yrm_A            7 GNGAFFCNECDCRFSEEASLKRHTL-QTHSDK   37 (43)
T ss_dssp             SSCCBCCSSSCCCBSSHHHHHHHHH-HHTCTT
T ss_pred             CCCCEECCCCCCeeCChHHHHHHHH-hhCCCC
Confidence            4579999999999999999999975 577664

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.33  E-value=8.4e-05  Score=49.46  Aligned_cols=31  Identities=35%  Similarity=0.590  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2em4_A            9 GQRPYECIECGKAFKTKSSLICHRR-SHTGEK   39 (46)
T ss_dssp             CSSSEECSSSCCEESSHHHHHHHHH-HHSSSS
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHH-hcCCCC
Confidence            4579999999999999999999975 687664

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.33  E-value=6.6e-05  Score=49.36  Aligned_cols=31  Identities=23%  Similarity=0.407  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (44)
T 2emb_A            9 TRKRYECSKCQATFNLRKHLIQHQK-THAAKS   39 (44)
T ss_dssp             CCSSEECTTTCCEESCHHHHHHHGG-GGCCCC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHH-HcCCCC
Confidence            4579999999999999999999985 687654

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.32  E-value=9e-05  Score=49.15  Aligned_cols=31  Identities=32%  Similarity=0.705  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|. ++|..|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k   39 (46)
T 2ytn_A            9 GKKPYKCNECGKVFTQNSHLARHR-GIHTGEK   39 (46)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHG-GGTSCCC
T ss_pred             CCcCeECCCCCCeeCCHHHHHHHh-hhcCCCC
Confidence            468999999999999999999996 4687664

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.32  E-value=0.00013  Score=48.44  Aligned_cols=32  Identities=31%  Similarity=0.628  Sum_probs=27.3

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      ..+||.|++||+.|.+...|.+|.+ +|..|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~   40 (46)
T 2em7_A            9 GEKPYKCEECGKGFICRRDLYTHHM-VHTGEKP   40 (46)
T ss_dssp             CCCSEECSSSCCEESCHHHHHHHGG-GGTTCCC
T ss_pred             CCcCccCCCccchhCCHHHHHHHHH-HhCCCCC
Confidence            4579999999999999999999964 6876653

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.32  E-value=0.00011  Score=48.78  Aligned_cols=31  Identities=35%  Similarity=0.820  Sum_probs=27.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2ytj_A            9 GEKPYICAECGKAFTIRSNLIKHQK-IHTKQK   39 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHH-HTSCCC
T ss_pred             CCcCeECCCCChhhCCHHHHHHHHH-HcCCCC
Confidence            4679999999999999999999975 687664

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.32  E-value=0.00013  Score=46.79  Aligned_cols=30  Identities=27%  Similarity=0.630  Sum_probs=25.8

Q ss_pred             CCCCeeccc--CCCCCCChHHHHHHHHHhhhhh
Q 014872          153 PNDPYICGV--CGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       153 p~~PY~C~V--CGRkf~T~~kL~kHFKQLHERE  183 (417)
                      ...||.|.+  ||+.|.+...|.+|.+ +|..|
T Consensus         5 ~~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~e   36 (37)
T 1va1_A            5 KKKQHICHIQGCGKVYGKTSHLRAHLR-WHTGE   36 (37)
T ss_dssp             SCCCEECCSTTCCCEESCHHHHHHHHH-HHHTT
T ss_pred             CCCCCCCCCCCCCCccCCHHHHHHHHH-hcCCC
Confidence            457999996  9999999999999976 57765

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.32  E-value=8.6e-05  Score=49.07  Aligned_cols=31  Identities=23%  Similarity=0.439  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (46)
T 2epw_A            9 GEKPCKCTECGKAFCWKSQLIMHQR-THVDDK   39 (46)
T ss_dssp             CCCSEECSSSCCEESSSHHHHHHHH-HCCSCC
T ss_pred             CCCCeeCCCCCCccCCHHHHHHHHH-HhCCCC
Confidence            4579999999999999999999985 587664

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=97.32  E-value=6.8e-05  Score=52.01  Aligned_cols=31  Identities=29%  Similarity=0.656  Sum_probs=26.2

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      ...||.|++||+.|.+...|.+|.+.+|..+
T Consensus        27 ~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A           27 NEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             SSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            3468999999999999999999988888754

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.32  E-value=9.7e-05  Score=48.82  Aligned_cols=31  Identities=29%  Similarity=0.534  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2eop_A            9 GEKPHECRECGKSFSFNSQLIVHQR-IHTGEN   39 (46)
T ss_dssp             CCCSCBCTTTCCBCSSHHHHHHHHT-TTTTSC
T ss_pred             CCCCeeCCCCCchhCCHHHHHHHHH-HcCCCC
Confidence            4579999999999999999999975 487664

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.31  E-value=9.6e-05  Score=48.85  Aligned_cols=31  Identities=29%  Similarity=0.790  Sum_probs=27.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|++||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2eme_A            9 GEKPYVCDYCGKAFGLSAELVRHQR-IHTGEK   39 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHG-GGCCCS
T ss_pred             CCCCeECCCCChhhCCHHHHHHHHH-hcCCCC
Confidence            4579999999999999999999985 687654

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.31  E-value=0.00012  Score=48.32  Aligned_cols=32  Identities=31%  Similarity=0.528  Sum_probs=27.2

Q ss_pred             CCCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          152 VPNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       152 ~p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ....||.|++||+.|.+...|.+|.+ +|..|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2eq4_A            8 TGEKLYNCKECGKSFSRAPCLLKHER-LHSGEK   39 (46)
T ss_dssp             SCCCCCCBTTTTBCCSCHHHHHHHHH-HCCSSS
T ss_pred             CCCCCeECCCCCCccCchHHHHHHHH-hcCCCC
Confidence            35689999999999999999999975 577654

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.31  E-value=5.6e-05  Score=50.09  Aligned_cols=31  Identities=26%  Similarity=0.672  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (45)
T 2epu_A            9 GQKPFECTHCGKSFRAKGNLVTHQR-IHTGEK   39 (45)
T ss_dssp             SCCSEEETTTTEEESSHHHHHHHHT-TTSSCC
T ss_pred             CCcCccCCCCCCccCChHHHHHHHH-HhCCCC
Confidence            4579999999999999999999965 687664

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.31  E-value=8.2e-05  Score=49.52  Aligned_cols=31  Identities=26%  Similarity=0.537  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|. ++|..|+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~~   39 (46)
T 2em5_A            9 STKSHQCHECGRGFTLKSHLNQHQ-RIHTGEK   39 (46)
T ss_dssp             CSCSEECSSSCCEESSHHHHHHHH-TTTSCSC
T ss_pred             CCCCeECCcCCCccCCHHHHHHHH-HHhCCCC
Confidence            467999999999999999999997 4587664

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.30  E-value=0.00012  Score=48.42  Aligned_cols=31  Identities=26%  Similarity=0.580  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2emm_A            9 GERPHKCNECGKSFIQSAHLIQHQR-IHTGEK   39 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHH-HHSCCC
T ss_pred             CCCCeeCCCCChhhCCHHHHHHHHH-HhCCCC
Confidence            4689999999999999999999975 587654

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.30  E-value=8.9e-05  Score=54.10  Aligned_cols=31  Identities=16%  Similarity=0.334  Sum_probs=23.2

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..||.|.+||+.|.+...|.+|.+..|..++
T Consensus        36 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~   66 (78)
T 2d9h_A           36 ALRFPCEFCGKRFEKPDSVAAHRSKSHPALL   66 (78)
T ss_dssp             TCCEECTTTCCEESSHHHHHHHHHHTSTTTS
T ss_pred             CcccCCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            4577777777777777777777777777664

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.30  E-value=0.00015  Score=48.12  Aligned_cols=31  Identities=29%  Similarity=0.658  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2emp_A            9 GVKPYMCNECGKAFSVYSSLTTHQV-IHTGEK   39 (46)
T ss_dssp             CCCSEECSSSCCEESCHHHHHHHHH-HHHCCS
T ss_pred             CCcCeECCCCCchhCCHHHHHHHHH-HcCCCC
Confidence            4679999999999999999999976 587654

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.30  E-value=0.00011  Score=48.95  Aligned_cols=31  Identities=39%  Similarity=0.762  Sum_probs=27.1

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|++||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2em8_A            9 GEKPYKCVECGKGYKRRLDLDFHQR-VHTGEK   39 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHH-HHHCCC
T ss_pred             CCCCeECcccCchhCCHHHHHHHHH-HHcCCC
Confidence            4679999999999999999999986 587664

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.30  E-value=0.00012  Score=48.62  Aligned_cols=31  Identities=26%  Similarity=0.666  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|++||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2eoq_A            9 GEKPFKCDICGKSFCGRSRLNRHSM-VHTAEK   39 (46)
T ss_dssp             SSCSCCCSSSCCCCSSHHHHHHHHH-HTTCCC
T ss_pred             CCCCcCCCcCCchhCCHHHHHHHHH-HcCCCC
Confidence            4579999999999999999999965 687664

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.29  E-value=7.3e-05  Score=49.59  Aligned_cols=31  Identities=32%  Similarity=0.708  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k   39 (46)
T 2eq0_A            9 GEKPYKCHECGKVFRRNSHLARHQL-IHTGEK   39 (46)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHT-TTCCCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHH-HcCCCC
Confidence            4689999999999999999999965 587664

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=97.29  E-value=0.00011  Score=48.64  Aligned_cols=31  Identities=32%  Similarity=0.636  Sum_probs=26.7

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|++||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2em9_A            9 GEKPYNCKECGKSFRWASCLLKHQR-VHSGEK   39 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHGG-GGTSCC
T ss_pred             CCcCeECCccccccCChHHHHHHHH-HhCCCC
Confidence            4579999999999999999999964 587664

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.29  E-value=8.2e-05  Score=49.18  Aligned_cols=31  Identities=32%  Similarity=0.814  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2yrj_A            9 GEKPYRCGECGKAFAQKANLTQHQR-IHTGEK   39 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHT-TTSSCC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHH-HcCCCC
Confidence            4579999999999999999999975 687654

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.29  E-value=0.0001  Score=48.70  Aligned_cols=31  Identities=29%  Similarity=0.732  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2ytr_A            9 GEKPYKCNECGKAFSQTSKLARHQR-IHTGEK   39 (46)
T ss_dssp             SCCTTCCTTTCCCCSSHHHHHHHHT-TTTTCS
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHH-hcCCCC
Confidence            4689999999999999999999975 587654

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.29  E-value=9.9e-05  Score=49.09  Aligned_cols=31  Identities=19%  Similarity=0.459  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhh-hH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHER-ER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHER-ER  184 (417)
                      ...||.|.+||+.|.+...|.+|. .+|.. |+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~   40 (46)
T 2eoy_A            9 KEKCFKCNKCEKTFSCSKYLTQHE-RIHTRGVK   40 (46)
T ss_dssp             CSCCEECSSSCCEESSSHHHHHHH-TTCCSCCT
T ss_pred             CCCCEECcCCCCcCCCHHHHHHHH-HHcCCCCC
Confidence            468999999999999999999997 46876 54

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.29  E-value=0.0001  Score=48.83  Aligned_cols=31  Identities=29%  Similarity=0.572  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2enc_A            9 GEKPFKCEECGKGFYTNSQCYSHQR-SHSGEK   39 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHH-HSCCSS
T ss_pred             CCCCcCCCCCCCcCCChHHHHHHHH-HhCCCC
Confidence            4579999999999999999999975 587664

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.28  E-value=9.9e-05  Score=49.10  Aligned_cols=31  Identities=29%  Similarity=0.625  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2ytq_A            9 GEKPYGCSECGKAFSSKSYLIIHMR-THSGEK   39 (46)
T ss_dssp             CCCSCBCSSSCCBCSCHHHHHHHHT-TTCCSC
T ss_pred             CCCCcCCCccChhhCChHHHHHHHH-HhCCCC
Confidence            4689999999999999999999975 587664

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.28  E-value=8.5e-05  Score=49.09  Aligned_cols=31  Identities=32%  Similarity=0.788  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2yts_A            9 GEKPYICNECGKSFIQKSHLNRHRR-IHTGEK   39 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHGG-GTSSCC
T ss_pred             CCcCEECCCCChhhCChHHHHHHHH-hcCCCC
Confidence            4679999999999999999999975 687664

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.28  E-value=7.8e-05  Score=49.28  Aligned_cols=31  Identities=29%  Similarity=0.673  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~   39 (46)
T 2eoe_A            9 GEKPYKCNECGKVFTQNSHLANHQR-IHTGVK   39 (46)
T ss_dssp             CCCSSEETTTTEECSSHHHHHHHHG-GGSCCC
T ss_pred             CCCCeECCCcChhhCCHHHHHHHHH-HcCCCC
Confidence            4679999999999999999999975 687664

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=97.28  E-value=0.00011  Score=48.90  Aligned_cols=31  Identities=32%  Similarity=0.692  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2el6_A            9 GVNPYKCSQCEKSFSGKLRLLVHQR-MHTREK   39 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHG-GGCCSS
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHH-HcCCCC
Confidence            4679999999999999999999964 587664

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.28  E-value=9.4e-05  Score=49.06  Aligned_cols=31  Identities=29%  Similarity=0.718  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2eq2_A            9 GGKPYQCNECGKAFSQTSKLARHQR-VHTGEK   39 (46)
T ss_dssp             SSCSSSCCSSCCCCSSHHHHHHHGG-GGCCCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHH-HcCCCC
Confidence            4579999999999999999999975 687664

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.27  E-value=0.00012  Score=48.55  Aligned_cols=31  Identities=29%  Similarity=0.695  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2ytd_A            9 GEKPYKCSECGKAFHRHTHLNEHRR-IHTGYR   39 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHH-HHTCCC
T ss_pred             CCcCeECCCCCCeeCChHHHHHHHH-HcCCCC
Confidence            4579999999999999999999964 687664

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.27  E-value=0.0001  Score=48.83  Aligned_cols=31  Identities=29%  Similarity=0.688  Sum_probs=27.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2yu8_A            9 GEKPYKCNECGKVFTQNSHLARHRR-VHTGGK   39 (46)
T ss_dssp             CCSSEECSSSCCEESSSHHHHHHTH-HHHSCC
T ss_pred             CCCCeECCcCCchhCCHHHHHHHHH-hcCCCC
Confidence            4689999999999999999999975 687664

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.27  E-value=0.0001  Score=48.87  Aligned_cols=31  Identities=32%  Similarity=0.748  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|++||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2ene_A            9 GEKPYKCNECGKVFRHNSYLSRHQR-IHTGEK   39 (46)
T ss_dssp             CSSSEECSSSCCEESSHHHHHHHHT-TTCCCC
T ss_pred             CCCCeECCCCCchhCChHHHHHHHh-hcCCCC
Confidence            4679999999999999999999976 587654

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.27  E-value=6.8e-05  Score=49.59  Aligned_cols=31  Identities=26%  Similarity=0.647  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2eq3_A            9 GEKPYECNQCGKAFSVRSSLTTHQA-IHTGKK   39 (46)
T ss_dssp             CCCSSEETTTTEECSSHHHHHHHHT-TSCCCC
T ss_pred             CCCCeECCCCChhhCCHHHHHHHHH-HhCCCC
Confidence            4689999999999999999999975 676654

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.26  E-value=0.00012  Score=48.72  Aligned_cols=31  Identities=29%  Similarity=0.823  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2em2_A            9 GEKPFKCKECGKAFRQNIHLASHLR-IHTGEK   39 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHH-HHCCCC
T ss_pred             CCCCEECCcCCchhCCHHHHHHHHH-HhCCCC
Confidence            5689999999999999999999976 577654

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.26  E-value=5.8e-05  Score=48.87  Aligned_cols=31  Identities=26%  Similarity=0.595  Sum_probs=26.5

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|++||+.|.+...|.+|.+ +|..|+
T Consensus         8 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   38 (42)
T 2ytb_A            8 GEKPYRCDQCGKAFSQKGSLIVHIR-VHTGSG   38 (42)
T ss_dssp             SCCSBCCTTTTCCBSSHHHHHTTGG-GTSCCS
T ss_pred             CCCCeeCCCccchhCCHHHHHHHHH-HhCCCC
Confidence            4679999999999999999999975 576554

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.26  E-value=8e-05  Score=48.80  Aligned_cols=31  Identities=29%  Similarity=0.561  Sum_probs=26.5

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (44)
T 2eoj_A            9 GENPYECCECGKVFSRKDQLVSHQK-THSGQS   39 (44)
T ss_dssp             SCCSCEETTTTEECSSHHHHHHHHT-TSSSSC
T ss_pred             CCcCeeCCCCCCccCCHHHHHHHHH-HcCCCC
Confidence            4579999999999999999999975 576654

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.25  E-value=0.0001  Score=48.82  Aligned_cols=31  Identities=29%  Similarity=0.670  Sum_probs=27.1

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2ep0_A            9 GEKPYKCDVCHKSFRYGSSLTVHQR-IHTGEK   39 (46)
T ss_dssp             TCCSEECSSSCCEESSHHHHHHHHT-TTSSSC
T ss_pred             CCCCeeCcccCcccCChHHHHHHHH-HhCCCC
Confidence            5679999999999999999999965 687664

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.24  E-value=9.6e-05  Score=49.00  Aligned_cols=31  Identities=29%  Similarity=0.611  Sum_probs=26.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|.+||+.|.+...|.+|.+. |..|+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k   39 (46)
T 2en6_A            9 GEKPYGCNECGKTFSQKSILSAHQRT-HTGEK   39 (46)
T ss_dssp             SSCCEEETTTTEEESSHHHHHHHHHH-HSSCC
T ss_pred             CCcCeECCCCCcccCchHHHHHHHHH-cCCCC
Confidence            45799999999999999999999874 77654

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.24  E-value=9.7e-05  Score=45.04  Aligned_cols=28  Identities=29%  Similarity=0.800  Sum_probs=24.0

Q ss_pred             CCeecc--cCCCCCCChHHHHHHHHHhhhhh
Q 014872          155 DPYICG--VCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       155 ~PY~C~--VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      .||.|.  .||+.|.+...|.+|.+ +|..|
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~-~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKR-THTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHT-TTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHH-HhcCC
Confidence            489998  99999999999999975 47654

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.22  E-value=6e-05  Score=49.58  Aligned_cols=31  Identities=29%  Similarity=0.678  Sum_probs=26.7

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~   39 (44)
T 2eox_A            9 DSKSYNCNECGKAFTRIFHLTRHQK-IHTRKS   39 (44)
T ss_dssp             CCCCEEETTTTEEESSSHHHHTTHH-HHCCCC
T ss_pred             CCCCeECcccCcccCCHHHHHHHHH-HhCCCC
Confidence            4689999999999999999999986 576554

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.21  E-value=0.00021  Score=54.63  Aligned_cols=35  Identities=23%  Similarity=0.365  Sum_probs=29.8

Q ss_pred             cCccCCCCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          148 RGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       148 ~G~v~p~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      .|-....+||.|..||+.|.+...|.+|.+. |..+
T Consensus         5 ~~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~-Htg~   39 (66)
T 2epp_A            5 SSGLREAGILPCGLCGKVFTDANRLRQHEAQ-HGVT   39 (66)
T ss_dssp             SCSCCCCCCCCCTTTCCCCSCHHHHHHHHHH-HTTT
T ss_pred             CCCCCCccCcCCCCCCCccCCHHHHHhhhhh-hCCC
Confidence            4455677999999999999999999999875 8765

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.21  E-value=0.00013  Score=48.17  Aligned_cols=31  Identities=26%  Similarity=0.562  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2ytf_A            9 GEKPFECSECQKAFNTKSNLIVHQR-THTGEK   39 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHH-TSCSSS
T ss_pred             CCCCcCCCCCCcccCCHHHHHHHHH-HhCCCC
Confidence            4689999999999999999999975 577654

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.21  E-value=0.00012  Score=48.44  Aligned_cols=32  Identities=28%  Similarity=0.588  Sum_probs=27.4

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      ..+||.|.+||+.|.....|.+|.+ +|..|+.
T Consensus         7 ~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~~~   38 (45)
T 2epq_A            7 GEKPYSCPVCGLRFKRKDRMSYHVR-SHDGSVG   38 (45)
T ss_dssp             SCCSSEETTTTEECSCHHHHHHHHH-HHSCCCC
T ss_pred             CCCCCcCCCCCcccCCHHHHHHHHH-HccCCCC
Confidence            4579999999999999999999986 4776654

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.20  E-value=0.00015  Score=47.98  Aligned_cols=31  Identities=23%  Similarity=0.375  Sum_probs=26.5

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2yso_A            9 REKSHQCRECGEIFFQYVSLIEHQV-LHMGQK   39 (46)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHH-HHSCCS
T ss_pred             CCCCEEccccChhhCCHHHHHHHHH-HhCCCC
Confidence            4579999999999999999999975 576554

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.19  E-value=8.1e-05  Score=49.36  Aligned_cols=31  Identities=35%  Similarity=0.788  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..+||.|++||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2ysp_A            9 GEKPYKCEKCGKGYNSKFNLDMHQK-VHTGER   39 (46)
T ss_dssp             SCCSEEETTTTEEESCHHHHHHHHT-TSCSCC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHH-hhCCCC
Confidence            4579999999999999999999976 577654

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.15  E-value=0.00019  Score=52.34  Aligned_cols=31  Identities=26%  Similarity=0.521  Sum_probs=25.4

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      ..+||.|++||+.|.+...|.+|.++.|..+
T Consensus        12 ~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~   42 (77)
T 2ct1_A           12 GEKPYECYICHARFTQSGTMKMHILQKHTEN   42 (77)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             CCCCeECCCcCchhCCHHHHHHHHHHhcCCC
Confidence            4578888888888888888888888888754

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.14  E-value=0.00022  Score=48.90  Aligned_cols=32  Identities=19%  Similarity=0.342  Sum_probs=26.6

Q ss_pred             cCCCCCeeccc--CCCCCCChHHHHHHHHHhhhhh
Q 014872          151 AVPNDPYICGV--CGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       151 v~p~~PY~C~V--CGRkf~T~~kL~kHFKQLHERE  183 (417)
                      -..++||.|.+  ||+.|.+...|++|.+ +|..|
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r-~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLK-VHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHH-HHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHH-hcCCC
Confidence            34568999987  9999999999999975 57644

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=97.13  E-value=0.00015  Score=57.21  Aligned_cols=55  Identities=11%  Similarity=0.184  Sum_probs=40.7

Q ss_pred             ccCCCCCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhhhhccccchhHHHHHHh
Q 014872          150 VAVPNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKERY  206 (417)
Q Consensus       150 ~v~p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnrL~S~KGkrR~rl~~~~  206 (417)
                      +-.+.++|.|++||+.|.+...|.+|.+ +|..|+.=.+..+... ..++..|...+
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~-~H~~~k~~~C~~C~k~-F~~~~~L~~H~   76 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLR-LLHAAQVFPCKYCPAT-FYSSPGLTRHI   76 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHH-TTSCSSSEECTTSSCE-ESSHHHHHHHH
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhh-hccCCCccCCCCCCCE-eCCHHHHHHhC
Confidence            3346789999999999999999999987 5777776666655443 55555665543

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.13  E-value=0.0002  Score=57.63  Aligned_cols=38  Identities=21%  Similarity=0.377  Sum_probs=32.7

Q ss_pred             ccCCCCCeeccc--CCCCCCChHHHHHHHHHhhhhhHHHH
Q 014872          150 VAVPNDPYICGV--CGRKCKTNLDLKKHFKQLHERERQKK  187 (417)
Q Consensus       150 ~v~p~~PY~C~V--CGRkf~T~~kL~kHFKQLHERER~KR  187 (417)
                      ..+.++||.|..  ||+.|.....|.+|.+.+|+.|+...
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~   60 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAF   60 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCC
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcc
Confidence            345778999975  99999999999999999999887643

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=97.11  E-value=0.00018  Score=47.48  Aligned_cols=31  Identities=23%  Similarity=0.434  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (46)
T 2el4_A            9 GVKPYGCSQCAKTFSLKSQLIVHQR-SHTGVK   39 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHGG-GSSSCC
T ss_pred             CCCceECCCCCchhCCHHHHHHHHH-HhCCCC
Confidence            4579999999999999999999974 587664

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.10  E-value=0.00014  Score=52.16  Aligned_cols=31  Identities=26%  Similarity=0.578  Sum_probs=20.0

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      .+||.|.+||+.|.+...|.+|.+. |..++.
T Consensus         7 ~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   37 (70)
T 1x5w_A            7 GHPEKCSECSYSCSSKAALRIHERI-HCTDRP   37 (70)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHGG-GCCSCS
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH-cCCCCC
Confidence            4567777777777777777777654 655544

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.10  E-value=1.2e-05  Score=50.38  Aligned_cols=29  Identities=21%  Similarity=0.306  Sum_probs=25.1

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      +||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~-~H~~~k   29 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIK-TAFIVV   29 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTT-SSSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHH-HHccCC
Confidence            48999999999999999999974 687664

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.10  E-value=0.00027  Score=44.85  Aligned_cols=30  Identities=27%  Similarity=0.631  Sum_probs=25.8

Q ss_pred             CCCeeccc--CCCCCCChHHHHHHHHHhhhhhH
Q 014872          154 NDPYICGV--CGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       154 ~~PY~C~V--CGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..||.|.+  ||+.|.+...|.+|.+ +|..|+
T Consensus         4 ~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k   35 (38)
T 1bhi_A            4 DKPFLCTAPGCGQRFTNEDHLAVHKH-KHEMTL   35 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHH-HHHTTT
T ss_pred             CcceECCCCCCCcccCCHHHHHHHHH-HhCCCC
Confidence            57999995  9999999999999975 577654

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.09  E-value=0.00015  Score=48.09  Aligned_cols=31  Identities=29%  Similarity=0.736  Sum_probs=26.7

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~   39 (46)
T 2en1_A            9 GEKPFKCEECGKRFTQNSQLHSHQR-VHTGEK   39 (46)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGG-GGSCCC
T ss_pred             CCCCeeCCCCCcccCCHHHHHHHHH-HcCCCC
Confidence            4679999999999999999999974 577654

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.08  E-value=0.00022  Score=53.12  Aligned_cols=29  Identities=38%  Similarity=0.768  Sum_probs=24.6

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      .||.|++||+.|.+...|.+|.+++|..+
T Consensus        64 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           64 KPYICQSCGKGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHHHHTSCCC
T ss_pred             CceECCCccchhCCHHHHHHHHHHhcCCC
Confidence            68889999999999999999988888654

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=97.08  E-value=0.0003  Score=48.03  Aligned_cols=27  Identities=26%  Similarity=0.661  Sum_probs=23.4

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhh
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLH  180 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLH  180 (417)
                      ..||.|++||+.|.+...|.+|.+.-|
T Consensus        30 ~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C           30 EKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            468999999999999999999988766

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=97.06  E-value=0.00033  Score=49.37  Aligned_cols=28  Identities=21%  Similarity=0.476  Sum_probs=23.7

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhh
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHE  181 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHE  181 (417)
                      ..||.|++||+.|.+...|.+|.+..|.
T Consensus        38 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           38 VKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            4789999999999999999999888773

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=97.04  E-value=0.00024  Score=48.58  Aligned_cols=33  Identities=27%  Similarity=0.548  Sum_probs=25.5

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhhhhHHHH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHERERQKK  187 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KR  187 (417)
                      +.||.|++||+.|.+...|.+|.+ +|..++.-+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~   34 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLR-THTGEKPYK   34 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHH-HHHCCCCEE
T ss_pred             CCCccCCCCcchhCChHHHHHHHH-HcCCCCCcC
Confidence            468999999999999999999987 477665433

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.03  E-value=0.00032  Score=47.92  Aligned_cols=26  Identities=19%  Similarity=0.413  Sum_probs=23.7

Q ss_pred             cCCCCCeecccCCCCCCChHHHHHHH
Q 014872          151 AVPNDPYICGVCGRKCKTNLDLKKHF  176 (417)
Q Consensus       151 v~p~~PY~C~VCGRkf~T~~kL~kHF  176 (417)
                      ...++||.|..||+.|.....|++|.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            44568999999999999999999997

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=97.03  E-value=0.00017  Score=50.92  Aligned_cols=37  Identities=19%  Similarity=0.353  Sum_probs=30.3

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhh-hhhHHHHHhh
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLH-ERERQKKLNR  190 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLH-ERER~KRLnr  190 (417)
                      ..||.|++||+.|.+...|.+|.+..| ..++.-++..
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~   45 (66)
T 2drp_A            8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPF   45 (66)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTT
T ss_pred             CcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCC
Confidence            579999999999999999999999988 4555434433

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.03  E-value=0.00015  Score=47.99  Aligned_cols=31  Identities=29%  Similarity=0.793  Sum_probs=26.7

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|. ++|..|+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~k   39 (46)
T 2ytg_A            9 GEKPFKCGECGKSYNQRVHLTQHQ-RVHTGEK   39 (46)
T ss_dssp             SCCSEECTTTCCEESSSHHHHTTG-GGGSSCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHH-HHcCCCC
Confidence            457999999999999999999996 4687654

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.02  E-value=0.00019  Score=48.47  Aligned_cols=32  Identities=22%  Similarity=0.489  Sum_probs=27.2

Q ss_pred             CCCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          152 VPNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       152 ~p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ....||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   39 (48)
T 2epr_A            8 RTRKQVACEICGKIFRDVYHLNRHKL-SHSGEK   39 (48)
T ss_dssp             CCCCSEEETTTTEEESSHHHHHHHGG-GSCSCC
T ss_pred             CCCcCeeCCCCCcccCCHHHHHHHHH-hcCCCC
Confidence            35679999999999999999999965 677654

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.99  E-value=0.00021  Score=52.10  Aligned_cols=30  Identities=20%  Similarity=0.409  Sum_probs=27.7

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      .||.|++||+.|.+...|.+|.+..|..++
T Consensus        44 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~   73 (77)
T 2ct1_A           44 AKFHCPHCDTVIARKSDLGVHLRKQHSYSG   73 (77)
T ss_dssp             SSEECSSSSCEESSHHHHHHHHHHTSCCSC
T ss_pred             CccCCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            689999999999999999999999997654

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=96.89  E-value=0.00048  Score=50.60  Aligned_cols=28  Identities=39%  Similarity=0.885  Sum_probs=15.1

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      .||.|++||+.|.+...|.+|.+ +|..|
T Consensus        61 ~~~~C~~C~~~f~~~~~l~~H~~-~H~~~   88 (90)
T 1a1h_A           61 KPFACDICGRKFARSDERKRHTK-IHLRQ   88 (90)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHG-GGGC-
T ss_pred             CCccCCCCCchhCCHHHHHHHHH-Hhccc
Confidence            45666666666666666666654 34433

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=96.88  E-value=0.00039  Score=48.10  Aligned_cols=49  Identities=20%  Similarity=0.428  Sum_probs=33.6

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhhhhccccchhHHHHHH
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKER  205 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnrL~S~KGkrR~rl~~~  205 (417)
                      +||.|++||+.|.+...|.+|.+. |..++.-+...+... ..++..|...
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~-f~~~~~l~~H   49 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRA-FTRRDLLIRH   49 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT-TTSSCSEECTTTCCE-ESSHHHHHHH
T ss_pred             CcCcCCCCccccCCHHHHHHHHHH-hCCCCCccCCCCCCc-cCCHHHHHHH
Confidence            489999999999999999999875 876654444333222 3344444444

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.88  E-value=0.00036  Score=53.86  Aligned_cols=31  Identities=29%  Similarity=0.623  Sum_probs=26.3

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      ...||.|++||+.|.+...|.+|.+..|..+
T Consensus        91 ~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           91 GEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             SSCSEECSSSCCEESSHHHHHHHHHHTSSCS
T ss_pred             CCCCccCCCccchhCCHHHHHHHHHHHCCCC
Confidence            3478999999999999999999999888765

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=96.87  E-value=0.00044  Score=50.08  Aligned_cols=51  Identities=20%  Similarity=0.352  Sum_probs=31.7

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhhhhccccchhHHHHHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKER  205 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnrL~S~KGkrR~rl~~~  205 (417)
                      ...||.|.+||+.|.+...|.+|.+ .|..++.-++..+... ..++..|...
T Consensus        14 ~~~~~~C~~C~k~f~~~~~l~~H~~-~H~~~~~~~C~~C~k~-f~~~~~L~~H   64 (74)
T 2lce_A           14 SDKPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQ-FNRPANLKTH   64 (74)
T ss_dssp             CCCSBCCTTSSCCBSCHHHHHHHHH-HHCCCCSEECTTTCCE-ESCHHHHHHH
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHH-HcCCCCCEECCCCCch-hCCHHHHHHH
Confidence            4568888888888888888888875 4666554444433322 3344444444

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=96.85  E-value=0.00079  Score=52.91  Aligned_cols=39  Identities=31%  Similarity=0.631  Sum_probs=33.3

Q ss_pred             CCCCCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhhh
Q 014872          152 VPNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRM  191 (417)
Q Consensus       152 ~p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnrL  191 (417)
                      ....||.|.+||+.|.+...|.+|.+ +|..|+.-++.+.
T Consensus        21 ~~~kpy~C~~C~k~F~~~~~L~~H~~-~Ht~ekp~~C~~~   59 (88)
T 1x6f_A           21 LQNSTYQCKHCDSKLQSTAELTSHLN-IHNEEFQKRAKRQ   59 (88)
T ss_dssp             CCCSCEECSSSCCEESSHHHHHHHHH-HHHHHHHHHCCCC
T ss_pred             CCCCCCcCCCCCCEeCCHHHHHHHHH-HhCCCCCcccchh
Confidence            35689999999999999999999975 6999988776553

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.83  E-value=0.00048  Score=49.79  Aligned_cols=32  Identities=28%  Similarity=0.565  Sum_probs=21.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      .++||.|++||+.|.+...|.+|.+ +|..++.
T Consensus        11 ~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~   42 (72)
T 1x6e_A           11 GEKPYGCVECGKAFSRSSILVQHQR-VHTGEKP   42 (72)
T ss_dssp             TCCCEECSSSCCEESSHHHHHHHHH-GGGCSCC
T ss_pred             CCCCccCCCCCCccCCHHHHHHHHH-hcCCCCC
Confidence            4467777777777777777777765 3554443

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=96.83  E-value=0.00046  Score=49.98  Aligned_cols=31  Identities=32%  Similarity=0.804  Sum_probs=26.4

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus        42 ~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k   72 (74)
T 2lce_A           42 GEKPYRCNICGAQFNRPANLKTHTR-IHSGEK   72 (74)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHH-HHCCSC
T ss_pred             CCCCEECCCCCchhCCHHHHHHHHH-hcCCCC
Confidence            3578999999999999999999985 576553

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.74  E-value=0.00074  Score=48.77  Aligned_cols=30  Identities=30%  Similarity=0.574  Sum_probs=25.6

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      ...||.|++||+.|.+...|.+|.+. |..+
T Consensus        39 ~~~~~~C~~C~~~f~~~~~L~~H~~~-H~~~   68 (72)
T 1x6e_A           39 GEKPYKCLECGKAFSQNSGLINHQRI-HTSG   68 (72)
T ss_dssp             CSCCEECSSSCCEESSHHHHHHHHHH-HHSS
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHh-cCCC
Confidence            35789999999999999999999864 6544

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.71  E-value=0.0015  Score=50.44  Aligned_cols=52  Identities=17%  Similarity=0.268  Sum_probs=39.3

Q ss_pred             CCCCeecccCCCCCC-ChHHHHHHHHHhhhh-hHHHHHhhhhccccchhHHHHHHh
Q 014872          153 PNDPYICGVCGRKCK-TNLDLKKHFKQLHER-ERQKKLNRMKSLKGKKRQKYKERY  206 (417)
Q Consensus       153 p~~PY~C~VCGRkf~-T~~kL~kHFKQLHER-ER~KRLnrL~S~KGkrR~rl~~~~  206 (417)
                      ..+||.|.+||+.|. +...|++|.+. |.. ++.-++..+... ..++..|...+
T Consensus        21 ~~~~~~C~~C~k~f~~~~~~L~~H~~~-h~~~~~~~~C~~C~k~-F~~~~~L~~H~   74 (98)
T 2gqj_A           21 ERGEAVCPTCNVVTRKTLVGLKKHMEV-CQKLQDALKCQHCRKQ-FKSKAGLNYHT   74 (98)
T ss_dssp             TTSCCCCTTTCCCCSSCSHHHHHHHHH-HHHHHHHHSCSSSCCC-CSCHHHHHHHH
T ss_pred             cCCCcCCCCCCCChhhhHHHHHHHHHH-HcCCCCCEECCCCCCc-cCCHHHHHHHH
Confidence            457999999999999 99999999965 655 766666655433 56666666665

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=96.71  E-value=0.00054  Score=46.79  Aligned_cols=24  Identities=42%  Similarity=0.700  Sum_probs=17.2

Q ss_pred             CCCeecccCCCCCCChHHHHHHHH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFK  177 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFK  177 (417)
                      ..||.|++||+.|.+...|.+|.+
T Consensus        27 ~~~~~C~~C~~~f~~~~~l~~H~~   50 (57)
T 1bbo_A           27 VRPYHCTYCNFSFKTKGNLTKHMK   50 (57)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCccCCCCCchhcCHHHHHHHHH
Confidence            456777777777777777777764

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.70  E-value=0.00066  Score=53.36  Aligned_cols=28  Identities=21%  Similarity=0.547  Sum_probs=18.4

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHER  182 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHER  182 (417)
                      +||.|.+||+.|.+...|++|...+|..
T Consensus        61 k~~~C~~Cgk~F~~~~~L~~H~~~~H~~   88 (96)
T 2ctd_A           61 EMFTCHHCGKQLRSLAGMKYHVMANHNS   88 (96)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             CCeECCCCCCeeCCHHHHHHHhHHhcCC
Confidence            5677777777777777777775556653

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.69  E-value=0.00034  Score=53.85  Aligned_cols=29  Identities=21%  Similarity=0.473  Sum_probs=17.3

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      .||.|.+||+.|.+...|.+|.+.+|..|
T Consensus        68 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   96 (107)
T 1wjp_A           68 KKLTCLECMRTFKSSFSIWRHQVEVHNQN   96 (107)
T ss_dssp             GGGEEGGGTEECSSHHHHHHHHHHTSCCC
T ss_pred             CCccCccccchhCCHHHHHHHHHHHcCCC
Confidence            45666666666666666666666555544

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=96.62  E-value=0.00057  Score=46.26  Aligned_cols=30  Identities=20%  Similarity=0.596  Sum_probs=25.6

Q ss_pred             CCCCeecc--cCCCCCCChHHHHHHHHHhhhhh
Q 014872          153 PNDPYICG--VCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       153 p~~PY~C~--VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      .+.||.|.  .||+.|.....|.+|.+ +|..|
T Consensus        15 ~~k~~~C~~~~C~k~F~~~~~L~~H~~-~H~~e   46 (47)
T 1ncs_A           15 PDKTFECLFPGCTKTFKRRYNIRSHIQ-THLED   46 (47)
T ss_dssp             TTTEEECCCTTCCCEECSSSSHHHHHH-HHTTT
T ss_pred             CCCCeECCCCCCCCccCCHHHHHHHHH-HccCC
Confidence            45799996  79999999999999976 57765

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.61  E-value=0.00086  Score=39.38  Aligned_cols=24  Identities=33%  Similarity=0.653  Sum_probs=21.7

Q ss_pred             CCeecc--cCCCCCCChHHHHHHHHH
Q 014872          155 DPYICG--VCGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       155 ~PY~C~--VCGRkf~T~~kL~kHFKQ  178 (417)
                      +||.|.  .||+.|.+...|.+|.+.
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHH
Confidence            479999  999999999999999753

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.60  E-value=0.0012  Score=47.22  Aligned_cols=29  Identities=31%  Similarity=0.705  Sum_probs=25.2

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHE  181 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHE  181 (417)
                      ...||.|.+||+.|.+...|.+|.+.-|.
T Consensus        34 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A           34 TDRPFKCNYCSFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             CSCSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCCCEeCCCCCCccCCHHHHHHHHHHHhC
Confidence            45789999999999999999999876553

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.52  E-value=0.00075  Score=49.17  Aligned_cols=27  Identities=30%  Similarity=0.688  Sum_probs=15.7

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHER  182 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHER  182 (417)
                      .||.|++||+.|.+...|.+|.+ +|..
T Consensus        45 ~~~~C~~C~~~f~~~~~L~~H~~-~H~~   71 (77)
T 2cot_A           45 KPYKCDECGKAFIQRSHLIGHHR-VHTG   71 (77)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG-GSCC
T ss_pred             cCeeCCCCCCccCCHHHHHHHHH-HhCC
Confidence            45666666666666666666653 3443

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.49  E-value=0.0015  Score=50.47  Aligned_cols=31  Identities=19%  Similarity=0.370  Sum_probs=27.3

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      .+.||.|.+||+.|.+...|.+|.+..|..+
T Consensus        77 ~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~  107 (115)
T 2dmi_A           77 AQKVLKCMYCGHSFESLQDLSVHMIKTKHYQ  107 (115)
T ss_dssp             CCSSCBCSSSCCBCSSHHHHHHHHHHTTTTT
T ss_pred             CCcceECCCCCCccCCHHHHHHHHHHhCCcc
Confidence            4579999999999999999999998877543

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.47  E-value=0.0019  Score=46.96  Aligned_cols=31  Identities=29%  Similarity=0.702  Sum_probs=25.4

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      ...||.|.+||+.|.+...|.+|.+..|..+
T Consensus        12 ~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~   42 (86)
T 1x6h_A           12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   42 (86)
T ss_dssp             CCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCcCCCCCCccCCHHHHHHHHHHhcCCc
Confidence            4578999999999999999999988877653

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.45  E-value=0.00069  Score=55.06  Aligned_cols=32  Identities=28%  Similarity=0.440  Sum_probs=21.2

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      ..||.|.+||+.|.+...|.+|...+|..|+.
T Consensus        48 ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekp   79 (102)
T 2ghf_A           48 NSSYVCVECNFLTKRYDALSEHNLKYHPGEEN   79 (102)
T ss_dssp             SCCEEETTTTEEESSTHHHHTHHHHTSTTCCC
T ss_pred             CCCcCCCCCCcccCCHHHHHHHHHHhcCCCCC
Confidence            35677777777777777777775566666654

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=96.44  E-value=0.0014  Score=47.03  Aligned_cols=24  Identities=25%  Similarity=0.686  Sum_probs=21.5

Q ss_pred             CCCeecccCCCCCCChHHHHHHHH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFK  177 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFK  177 (417)
                      ..||.|++||+.|.+...|.+|.+
T Consensus        47 ~~~~~C~~C~~~f~~~~~l~~H~~   70 (73)
T 1f2i_G           47 QKPFQCRICMRNFSRSDHLTTHIR   70 (73)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHT
T ss_pred             CCCeECCCCCchhCCHHHHHHHHH
Confidence            478999999999999999999975

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=96.42  E-value=0.0014  Score=44.66  Aligned_cols=27  Identities=37%  Similarity=0.668  Sum_probs=25.0

Q ss_pred             CeecccCCCCCCChHHHHHHHHHhhhh
Q 014872          156 PYICGVCGRKCKTNLDLKKHFKQLHER  182 (417)
Q Consensus       156 PY~C~VCGRkf~T~~kL~kHFKQLHER  182 (417)
                      ||.|.+||+.|.+...|.+|.+.-+..
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~   27 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDV   27 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCC
Confidence            799999999999999999999987774

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.41  E-value=0.0015  Score=47.46  Aligned_cols=52  Identities=15%  Similarity=0.259  Sum_probs=35.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhh---hHHHHHhhhhccccchhHHHHHHh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHER---ERQKKLNRMKSLKGKKRQKYKERY  206 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHER---ER~KRLnrL~S~KGkrR~rl~~~~  206 (417)
                      ..+||.|.+||+.|.+...|.+|.+ +|..   ++.-++..+.. ...++..|...+
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~~~~C~~C~k-~f~~~~~L~~H~   58 (78)
T 2d9h_A            4 GSSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGK-RFEKPDSVAAHR   58 (78)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHH-HHHHHTTTCCEECTTTCC-EESSHHHHHHHH
T ss_pred             CCcCeECCCCCCeeCCHHHHHHHHH-HhhccCCCcccCCCCCCc-hhCCHHHHHHHH
Confidence            4589999999999999999999986 4654   33333333322 244555555554

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.38  E-value=0.00098  Score=48.54  Aligned_cols=52  Identities=23%  Similarity=0.354  Sum_probs=36.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhhhhccccchhHHHHHHh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKERY  206 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnrL~S~KGkrR~rl~~~~  206 (417)
                      ...||.|.+||+.|.+...|.+|.+ +|..++.-++..+.. ...++..|...+
T Consensus        15 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~-~f~~~~~L~~H~   66 (77)
T 2cot_A           15 ERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGK-AFIQRSHLIGHH   66 (77)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHT-TTCCSCSEECSSSCC-EESSHHHHHHHG
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHH-HcCCCcCeeCCCCCC-ccCCHHHHHHHH
Confidence            4579999999999999999999986 577665433433322 244455555544

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=96.36  E-value=0.0015  Score=48.77  Aligned_cols=27  Identities=33%  Similarity=0.762  Sum_probs=18.7

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhh
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLH  180 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLH  180 (417)
                      ..||.|++||+.|.+...|.+|.+.-|
T Consensus        29 ~~~~~C~~C~k~f~~~~~L~~H~~~h~   55 (88)
T 1llm_C           29 EKPFACDICGRKFARSDERKRHRDIQH   55 (88)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             CCCccCCCCCCccCCHHHHHHHHHHhC
Confidence            457777777777777777777766655

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.36  E-value=0.001  Score=51.06  Aligned_cols=62  Identities=29%  Similarity=0.441  Sum_probs=33.6

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhhhhccccchhHHHHHHhhccchHHHHHH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKERYISGNDKYNEAA  217 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnrL~S~KGkrR~rl~~~~a~k~~KY~~AA  217 (417)
                      ..||.|++||+.|.+...|.+|.+ +|..++.-++..+... ..++..|...+......|..+.
T Consensus        35 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~-f~~~~~l~~H~~~~~~~~~~~~   96 (110)
T 2csh_A           35 LRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKR-FMWRDSFHRHVTSCTKSYEAAK   96 (110)
T ss_dssp             CCSEECTTTSCEESSSHHHHHHHT-TTCCCCCEECSSSCCE-ESCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCccCCCCCcccCCHHHHHHHHH-HcCCCCCeeCCCCcch-hcCHHHHHHHHHHccccccchh
Confidence            356777777777777777777754 4544443333333222 4445555555555445555443

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.33  E-value=0.0032  Score=48.26  Aligned_cols=35  Identities=17%  Similarity=0.415  Sum_probs=29.9

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHHHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKK  187 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KR  187 (417)
                      ...||.|++||+.|.+...|.+|.+.-|.......
T Consensus        62 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~   96 (110)
T 2csh_A           62 GIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAK   96 (110)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeeCCCCcchhcCHHHHHHHHHHccccccchh
Confidence            45789999999999999999999998887655543

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=96.24  E-value=0.0018  Score=49.15  Aligned_cols=29  Identities=28%  Similarity=0.570  Sum_probs=17.9

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      ..||.|.+||+.|.+...|.+|.+ +|..|
T Consensus        71 ~~~~~C~~C~~~f~~~~~L~~H~~-~H~~~   99 (106)
T 2ee8_A           71 EKPFKCQECGKGFCQSRTLAVHKT-LHMQT   99 (106)
T ss_dssp             CCTTSCSSSCCCCSSHHHHHHHHH-HTTSC
T ss_pred             CCCeECCCcCCcccCHHHHHHHHH-HhCCC
Confidence            356666666666666666666653 45443

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.20  E-value=0.0018  Score=48.23  Aligned_cols=24  Identities=33%  Similarity=0.700  Sum_probs=13.2

Q ss_pred             CCCeecccCCCCCCChHHHHHHHH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFK  177 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFK  177 (417)
                      ..||.|++||+.|.+...|.+|.+
T Consensus         6 ~~~~~C~~C~~~f~~~~~l~~H~~   29 (96)
T 2dmd_A            6 SGPHKCEVCGKCFSRKDKLKTHMR   29 (96)
T ss_dssp             CCCCCBTTTTBCCCCHHHHHHHGG
T ss_pred             CcCeECCCCCCccCCHHHHHHHHH
Confidence            345555555555555555555544

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.20  E-value=0.0018  Score=49.94  Aligned_cols=27  Identities=26%  Similarity=0.470  Sum_probs=24.3

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHE  181 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHE  181 (417)
                      .||.|.+||+.|.+...|++|.+.-|.
T Consensus        53 ~~~~C~~C~k~F~~~~~L~~H~~~h~~   79 (98)
T 2gqj_A           53 DALKCQHCRKQFKSKAGLNYHTMAEHS   79 (98)
T ss_dssp             HHHSCSSSCCCCSCHHHHHHHHHHHSC
T ss_pred             CCEECCCCCCccCCHHHHHHHHHHHcC
Confidence            589999999999999999999986553

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.14  E-value=0.0017  Score=42.92  Aligned_cols=31  Identities=23%  Similarity=0.569  Sum_probs=26.4

Q ss_pred             CCCCeecc--cCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICG--VCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~--VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|.  .||+.|.+...|.+|.+ +|..|+
T Consensus         9 ~~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k   41 (48)
T 2ent_A            9 GEKPFACTWPGCGWRFSRSDELSRHRR-SHSGVK   41 (48)
T ss_dssp             CCCCEECCSSSCCCEESSHHHHHHHHT-TSCCCC
T ss_pred             CCCCeECCCCCCCCccCCHHHHHHHHH-HhCCCC
Confidence            46799998  89999999999999975 576654

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.13  E-value=0.0026  Score=45.85  Aligned_cols=30  Identities=33%  Similarity=0.716  Sum_probs=20.3

Q ss_pred             CCCeeccc--CCCCCCChHHHHHHHHHhhhhhH
Q 014872          154 NDPYICGV--CGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       154 ~~PY~C~V--CGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..||.|.+  ||+.|.+...|.+|.+ +|..|+
T Consensus        36 ~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~~   67 (79)
T 2dlk_A           36 QKSFSCPEPACGKSFNFKKHLKEHMK-LHSDTR   67 (79)
T ss_dssp             CCCEECSCTTTCCEESSHHHHHHHHH-HHHTSC
T ss_pred             CCCeECCCCCCcCccCCHHHHHHHHH-HhCCCC
Confidence            35677777  7777777777777765 465443

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=96.12  E-value=0.0025  Score=45.59  Aligned_cols=39  Identities=23%  Similarity=0.537  Sum_probs=30.0

Q ss_pred             CCCCCeeccc--CCCCCCChHHHHHHHHHhhhhhHHHHHhhh
Q 014872          152 VPNDPYICGV--CGRKCKTNLDLKKHFKQLHERERQKKLNRM  191 (417)
Q Consensus       152 ~p~~PY~C~V--CGRkf~T~~kL~kHFKQLHERER~KRLnrL  191 (417)
                      ...+||.|++  ||+.|.+...|.+|.+ .|..++.-++..+
T Consensus        15 ~~~~~~~C~~~~C~k~f~~~~~l~~H~~-~h~~~~~~~C~~C   55 (73)
T 1f2i_G           15 PKMRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRIC   55 (73)
T ss_dssp             CCCCCEECSSTTBCCEESSHHHHHHHHH-HHHCCCCEECTTT
T ss_pred             CCCCccCCcCCCCCCccCCHHHHHHHHH-hhCCCCCeECCCC
Confidence            3567999985  9999999999999975 6876655444433

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.10  E-value=0.0022  Score=52.08  Aligned_cols=52  Identities=15%  Similarity=0.117  Sum_probs=36.5

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhh---hhhHHHHHhhhhccccchhHHHHHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLH---ERERQKKLNRMKSLKGKKRQKYKER  205 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLH---ERER~KRLnrL~S~KGkrR~rl~~~  205 (417)
                      .++||.|..||+.|.+...|.+|.+.+|   ..|+.-++..+... ...+..|...
T Consensus        15 gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~-F~~~~~L~~H   69 (102)
T 2ghf_A           15 VEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFL-TKRYDALSEH   69 (102)
T ss_dssp             CCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEE-ESSTHHHHTH
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcc-cCCHHHHHHH
Confidence            4579999999999999999999999999   44554444444322 3334444443

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=96.07  E-value=0.0033  Score=45.14  Aligned_cols=25  Identities=28%  Similarity=0.650  Sum_probs=21.9

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQ  178 (417)
                      ..||.|++||+.|.+...|.+|.+.
T Consensus        55 ~~~~~C~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A           55 EKPHKCQVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             CCCEECTTTSCEESSHHHHHHHHHH
T ss_pred             CCCCcCCCcchhhCChHHHHHHHHh
Confidence            4789999999999999999999764

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.05  E-value=0.0033  Score=45.74  Aligned_cols=27  Identities=15%  Similarity=0.525  Sum_probs=24.0

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhh
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLH  180 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLH  180 (417)
                      +.||.|.+||+.|.+...|.+|.+.-|
T Consensus        45 ~~~~~C~~C~~~f~~~~~L~~H~~~h~   71 (86)
T 1x6h_A           45 PAAFVCSKCGKTFTRRNTMARHADNCA   71 (86)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             CcceECCCCCChhCCHHHHHHHHHHcc
Confidence            478999999999999999999987543

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=96.03  E-value=0.0025  Score=46.78  Aligned_cols=51  Identities=18%  Similarity=0.321  Sum_probs=32.7

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhhhhccccchhHHHHHHh
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKERY  206 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnrL~S~KGkrR~rl~~~~  206 (417)
                      ..||.|++||+.|.+...|..|.+ .|..++.-+...+... ..++..|...+
T Consensus        32 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~-f~~~~~l~~H~   82 (90)
T 1a1h_A           32 QKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRK-FARSDERKRHT   82 (90)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHH-HHHCCCCEECTTTCCE-ESSHHHHHHHH
T ss_pred             CCCccCCCCCcccCCHHHHHHHHH-HcCCCCCccCCCCCch-hCCHHHHHHHH
Confidence            478999999999999999999986 5665544333333222 33444444443

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=95.99  E-value=0.0041  Score=46.44  Aligned_cols=26  Identities=35%  Similarity=0.741  Sum_probs=23.1

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQ  178 (417)
                      ...||.|.+||+.|.+...|.+|.+.
T Consensus        72 ~~~~~~C~~C~~~f~~~~~l~~H~~~   97 (100)
T 2ebt_A           72 GAKPFQCGVCNRSFSRSDHLALHMKR   97 (100)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             CCCCeECCCCcCccCCHHHHHHHHHH
Confidence            35789999999999999999999763

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=95.99  E-value=0.0014  Score=54.54  Aligned_cols=53  Identities=21%  Similarity=0.279  Sum_probs=36.6

Q ss_pred             CCCCCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhhhhccccchhHHHHHHh
Q 014872          152 VPNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKERY  206 (417)
Q Consensus       152 ~p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnrL~S~KGkrR~rl~~~~  206 (417)
                      ....||.|.+||+.|.+...|.+|.+ +|..|+.=....+... ...+..|...+
T Consensus        18 ~Gek~y~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C~k~-F~~~~~L~~H~   70 (133)
T 2lt7_A           18 DGRVYYICIVCKRSYVCLTSLRRHFN-IHSWEKKYPCRYCEKV-FPLAEYRTKHE   70 (133)
T ss_dssp             TTEEEEEETTTCCEESCHHHHHHHHH-HHHCCSCEECSSSSCE-ESSHHHHHHHH
T ss_pred             CCCcCeECCCCCCCcCCHHHHHHHHH-HcCCCCCeeCCccCee-cccccchhhhc
Confidence            34578999999999999999999986 6887766555544332 34444554443

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.98  E-value=0.0022  Score=50.39  Aligned_cols=50  Identities=18%  Similarity=0.149  Sum_probs=35.5

Q ss_pred             CCCCeecccCCCCC-CChHHHHHHHHHhhhhhHHHHHhhhhccccchhHHHHHH
Q 014872          153 PNDPYICGVCGRKC-KTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKER  205 (417)
Q Consensus       153 p~~PY~C~VCGRkf-~T~~kL~kHFKQLHERER~KRLnrL~S~KGkrR~rl~~~  205 (417)
                      ...||.|.+||+.| .+...|++|.+ +| .|+.-++..+... ..++..|...
T Consensus        31 ~~~~~~C~~C~k~F~~~~~~L~~H~~-~h-~~k~~~C~~Cgk~-F~~~~~L~~H   81 (96)
T 2ctd_A           31 DKGSVSCPTCQAVGRKTIEGLKKHME-NC-KQEMFTCHHCGKQ-LRSLAGMKYH   81 (96)
T ss_dssp             HTSCEECTTTCSCEESSHHHHHHHHH-HH-CCCCCCCSSSCCC-CSSHHHHHHH
T ss_pred             CCCCcCCCCCCCCcccCHHHHHHHHH-HH-CCCCeECCCCCCe-eCCHHHHHHH
Confidence            34789999999999 89999999986 47 6655445444332 4445555555

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=95.96  E-value=0.0049  Score=45.88  Aligned_cols=51  Identities=18%  Similarity=0.303  Sum_probs=36.7

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhhhhccccchhHHHHHHh
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKERY  206 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnrL~S~KGkrR~rl~~~~  206 (417)
                      ++||.|++||+.|.+...|.+|.+ +|..++.-+...+... ...+..|...+
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C~k~-f~~~~~L~~H~   51 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRK-FARSDERKRHR   51 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHH-HHHCCCCEECTTTCCE-ESSHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHH-HcCCCCCccCCCCCCc-cCCHHHHHHHH
Confidence            368999999999999999999987 4888765555444332 44445555544

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=95.96  E-value=0.0028  Score=50.08  Aligned_cols=48  Identities=17%  Similarity=0.268  Sum_probs=32.1

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhhhhccccchhHHHHHH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKER  205 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnrL~S~KGkrR~rl~~~  205 (417)
                      ..||.|.+||+.|.+...|.+|.+. |  ++.-.+..+... ..++..|...
T Consensus        72 ~~~~~C~~C~k~f~~~~~l~~H~~~-H--~~~~~C~~C~k~-f~~~~~l~~H  119 (129)
T 2wbt_A           72 ISQFVCPLCLMPFSSSVSLKQHIRY-T--EHTKVCPVCKKE-FTSTDSALDH  119 (129)
T ss_dssp             HCSEECTTTCCEESSHHHHHHHHHH-T--CCCCBCTTTCCB-CSSHHHHHHH
T ss_pred             CCCeECCCCCcccCCHhHHHHHHHH-C--CCCCCCCCCCcc-cCCHHHHHHH
Confidence            4789999999999999999999864 7  544444433322 3444444443

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=95.94  E-value=0.0031  Score=45.29  Aligned_cols=30  Identities=37%  Similarity=0.771  Sum_probs=20.2

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      ...||.|++||+.|.+...|.+|.+ .|..+
T Consensus        26 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~   55 (82)
T 2kmk_A           26 DTRPYPCQYCGKRFHQKSDMKKHTF-IHTGE   55 (82)
T ss_dssp             TCCCEECSSSCCEESSHHHHHHHHH-HHHTC
T ss_pred             CCCCeeCCcCChhhCCHHHHHHHHH-HhcCC
Confidence            3467777777777777777777765 44444

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=95.92  E-value=0.003  Score=52.55  Aligned_cols=30  Identities=23%  Similarity=0.550  Sum_probs=20.6

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      +.||.|++||+.|.+...|.+|.+..|..+
T Consensus        76 ~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~  105 (133)
T 2lt7_A           76 ERRYQCLACGKSFINYQFMSSHIKSVHSQD  105 (133)
T ss_dssp             CCCEEESSSCCEESSHHHHHHHHHHHTCCC
T ss_pred             CccccCCCCCCCcCCHHHHHHHhHHhcCCC
Confidence            356777777777777777777777766543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.92  E-value=0.0041  Score=44.79  Aligned_cols=53  Identities=19%  Similarity=0.236  Sum_probs=37.6

Q ss_pred             CCCCeeccc--CCCCCCChHHHHHHHHHhhhhhHHHHHhh--hhccccchhHHHHHHh
Q 014872          153 PNDPYICGV--CGRKCKTNLDLKKHFKQLHERERQKKLNR--MKSLKGKKRQKYKERY  206 (417)
Q Consensus       153 p~~PY~C~V--CGRkf~T~~kL~kHFKQLHERER~KRLnr--L~S~KGkrR~rl~~~~  206 (417)
                      ...||.|..  ||+.|.+...|.+|.+..|..++.-....  ... ....+..|...+
T Consensus         4 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k-~f~~~~~L~~H~   60 (79)
T 2dlk_A            4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGK-SFNFKKHLKEHM   60 (79)
T ss_dssp             CCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCC-EESSHHHHHHHH
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcC-ccCCHHHHHHHH
Confidence            357899998  99999999999999998998776544443  322 234444555443

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.84  E-value=0.0034  Score=46.61  Aligned_cols=29  Identities=24%  Similarity=0.521  Sum_probs=18.2

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      +.||.|.+||+.|.+...|.+|.+ .|..+
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~   33 (95)
T 2yt9_A            5 SSGVACEICGKIFRDVYHLNRHKL-SHSGE   33 (95)
T ss_dssp             CSCEECSSSCCEESSSHHHHHHHH-HSCSS
T ss_pred             CCCeECCCCCCccCChHHHHHHHH-hcCCC
Confidence            456666666666666666666665 35443

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.83  E-value=0.0053  Score=47.11  Aligned_cols=48  Identities=8%  Similarity=-0.032  Sum_probs=29.2

Q ss_pred             CeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhhhhccccchhHHHHHHh
Q 014872          156 PYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKERY  206 (417)
Q Consensus       156 PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnrL~S~KGkrR~rl~~~~  206 (417)
                      ||.|.+||+.|.+...|.+|.+  |..|+.-++..+... ...+..|...+
T Consensus        42 ~~~C~~C~~~f~~~~~l~~H~~--H~~~~~~~C~~C~~~-f~~~~~L~~H~   89 (107)
T 1wjp_A           42 AAVCPYCSLRFFSPELKQEHES--KCEYKKLTCLECMRT-FKSSFSIWRHQ   89 (107)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHH--HCSTGGGEEGGGTEE-CSSHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHH--cCCCCCccCccccch-hCCHHHHHHHH
Confidence            6777777777777777777762  766665554444332 44455555544

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=95.77  E-value=0.0054  Score=48.43  Aligned_cols=28  Identities=18%  Similarity=0.413  Sum_probs=25.1

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhh
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHE  181 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHE  181 (417)
                      ..||.|.+||+.|.+...|.+|.+.-|.
T Consensus        98 ~~~~~C~~C~k~f~~~~~l~~H~~~h~~  125 (129)
T 2wbt_A           98 EHTKVCPVCKKEFTSTDSALDHVCKKHN  125 (129)
T ss_dssp             CCCCBCTTTCCBCSSHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHHCC
Confidence            4689999999999999999999987663

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=95.73  E-value=0.0048  Score=47.28  Aligned_cols=30  Identities=33%  Similarity=0.645  Sum_probs=19.0

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..||.|++||+.|.+...|.+|.+ +|..++
T Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~   93 (119)
T 2jp9_A           64 VKPFQCKTCQRKFSRSDHLKTHTR-THTGEK   93 (119)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHH-HHHTCC
T ss_pred             CCCccCCccCchhCCHHHHHHHHH-HhcCCC
Confidence            356777777777777777777765 354443

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.65  E-value=0.0052  Score=45.78  Aligned_cols=27  Identities=26%  Similarity=0.482  Sum_probs=19.8

Q ss_pred             eecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          157 YICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       157 Y~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      |.|.+||+.|.+...|.+|.+ +|..|+
T Consensus        63 ~~C~~C~k~f~~~~~L~~H~~-~H~~~k   89 (95)
T 2ej4_A           63 EECPREGKSFKAKYKLVNHIR-VHTGEK   89 (95)
T ss_dssp             TTCSSTTCCCSSHHHHHHHHH-HHHTCC
T ss_pred             cCCCCCCcccCCHHHHHHHHH-hcCCCC
Confidence            778888888888888888865 466553

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.62  E-value=0.0047  Score=45.93  Aligned_cols=25  Identities=20%  Similarity=0.651  Sum_probs=19.4

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQ  178 (417)
                      ..||.|++||+.|.+...|.+|.+.
T Consensus        62 ~~~~~C~~C~~~f~~~~~l~~H~~~   86 (96)
T 2dmd_A           62 ERPFKCQICPYASRNSSQLTVHLRS   86 (96)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTT
T ss_pred             CCCccCCCCCCccCCHHHHHHHHHH
Confidence            4678888888888888888888764

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=95.57  E-value=0.0043  Score=43.39  Aligned_cols=30  Identities=23%  Similarity=0.586  Sum_probs=27.2

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      .+.++||.|-+.|.+...|..||...|..+
T Consensus         3 ~EGFiCP~C~~~l~s~~~L~~Hye~~H~~~   32 (34)
T 3mjh_B            3 SEGFICPQCMKSLGSADELFKHYEAVHDAG   32 (34)
T ss_dssp             SEEEECTTTCCEESSHHHHHHHHHHHTSSS
T ss_pred             CcccCCcHHHHHcCCHHHHHHHHHhccccC
Confidence            357999999999999999999999999764

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=95.55  E-value=0.0056  Score=44.74  Aligned_cols=24  Identities=29%  Similarity=0.627  Sum_probs=21.4

Q ss_pred             CCCeecccCCCCCCChHHHHHHHH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFK  177 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFK  177 (417)
                      ..||.|++||+.|.+...|.+|.+
T Consensus        63 ~~~~~C~~C~~~f~~~~~l~~H~~   86 (89)
T 2wbs_A           63 HRPFQCQKCDRAFSRSDHLALHMK   86 (89)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHGG
T ss_pred             CCCccCCCCCcccCCHHHHHHHHH
Confidence            468999999999999999999975

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.54  E-value=0.0056  Score=43.65  Aligned_cols=25  Identities=16%  Similarity=0.230  Sum_probs=22.4

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQ  178 (417)
                      +..||.|..||+.|. ...|.+|.+.
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~   31 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ   31 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH
Confidence            668999999999999 9999999876

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=95.50  E-value=0.0054  Score=51.35  Aligned_cols=53  Identities=21%  Similarity=0.341  Sum_probs=33.2

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhhhhccccchhHHHHHHhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKERYI  207 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnrL~S~KGkrR~rl~~~~a  207 (417)
                      ...||.|++||+.|.+...|.+|.+ +|..++.-+....... ...+..|...+.
T Consensus       130 ~~~~~~C~~C~~~f~~~~~L~~H~~-~H~~~~~~~C~~C~~~-f~~~~~L~~H~~  182 (190)
T 2i13_A          130 GEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKS-FSRRDALNVHQR  182 (190)
T ss_dssp             CCCCEECTTTCCEESCHHHHHHHHH-HHHCCCCEECTTTCCE-ESSHHHHHHHHT
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHH-hcCCCCCeECCCCCCc-cCCHHHHHHHHH
Confidence            3467888888888888888888876 4665554444433322 444455555443

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.42  E-value=0.0085  Score=46.23  Aligned_cols=27  Identities=19%  Similarity=0.441  Sum_probs=24.5

Q ss_pred             CCCCCeecccCCCCCCChHHHHHHHHH
Q 014872          152 VPNDPYICGVCGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       152 ~p~~PY~C~VCGRkf~T~~kL~kHFKQ  178 (417)
                      ....||.|.+||+.|.+...|.+|.+.
T Consensus        15 ~~~~~~~C~~C~k~f~~~~~L~~H~~~   41 (115)
T 2dmi_A           15 TGASKFRCKDCSAAYDTLVELTVHMNE   41 (115)
T ss_dssp             CCCCSEEBSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCEECCccCchhcCHHHHHHHHHH
Confidence            356899999999999999999999985

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.41  E-value=0.0063  Score=46.79  Aligned_cols=31  Identities=23%  Similarity=0.580  Sum_probs=20.6

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...||.|++||+.|.+...|.+|.+ +|..++
T Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~   93 (124)
T 2dlq_A           63 SEQVFTCSVCQETFRRRMELRLHMV-SHTGEM   93 (124)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHH-HHSSSC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHH-HcCCCC
Confidence            3467777777777777777777764 454443

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.05  E-value=0.013  Score=43.57  Aligned_cols=31  Identities=19%  Similarity=0.129  Sum_probs=27.5

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      ..|.|..||+.|.+...|.+|.+..|..++.
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   54 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPE   54 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTT
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCC
Confidence            3578999999999999999999988988765

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.04  E-value=0.0063  Score=43.39  Aligned_cols=30  Identities=30%  Similarity=0.448  Sum_probs=25.5

Q ss_pred             CCCCCeecc-cCCCCCCChHHHHHHHHHhhhh
Q 014872          152 VPNDPYICG-VCGRKCKTNLDLKKHFKQLHER  182 (417)
Q Consensus       152 ~p~~PY~C~-VCGRkf~T~~kL~kHFKQLHER  182 (417)
                      ....||.|+ .||+.|.....|.+|.+ +|..
T Consensus        32 ~~~~p~~C~~~C~k~f~~~~~L~~H~~-~hc~   62 (66)
T 2eod_A           32 CPRLPVACPNQCGVGTVAREDLPGHLK-DSCN   62 (66)
T ss_dssp             CSSSEEECTTCCSCCEEETTTHHHHHH-TTSS
T ss_pred             cCCcCccCCcccCcccccHHHHHHHHH-hhcc
Confidence            456899999 99999999999999975 4643

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=95.01  E-value=0.01  Score=42.47  Aligned_cols=34  Identities=26%  Similarity=0.435  Sum_probs=26.6

Q ss_pred             CCCCeeccc--CCCCCCChHHHHHHHHHhhhhhHHHH
Q 014872          153 PNDPYICGV--CGRKCKTNLDLKKHFKQLHERERQKK  187 (417)
Q Consensus       153 p~~PY~C~V--CGRkf~T~~kL~kHFKQLHERER~KR  187 (417)
                      ...+|.|.+  ||+.|.+...|.+|.+ +|..|+.-+
T Consensus        14 ~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~~~~~   49 (72)
T 2epa_A           14 RIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFS   49 (72)
T ss_dssp             CCCCEECSSTTTCCEESSHHHHHHHHH-HHSSSCSEE
T ss_pred             ccCceeCCCCCCccccCCHHHHHHHHH-hcCCCCCcc
Confidence            446899988  9999999999999985 576665433

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.99  E-value=0.0057  Score=49.14  Aligned_cols=33  Identities=27%  Similarity=0.610  Sum_probs=26.8

Q ss_pred             CCCCeeccc--CCCCCCChHHHHHHHHHhhhhhHH
Q 014872          153 PNDPYICGV--CGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       153 p~~PY~C~V--CGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      ...||.|++  ||+.|.+...|.+|.+.+|..++.
T Consensus        94 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~  128 (155)
T 2gli_A           94 GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP  128 (155)
T ss_dssp             TCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCC
T ss_pred             CCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            346888988  998888888888888888877654

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=94.88  E-value=0.01  Score=46.03  Aligned_cols=30  Identities=30%  Similarity=0.804  Sum_probs=18.4

Q ss_pred             CCCeeccc--CCCCCCChHHHHHHHHHhhhhhH
Q 014872          154 NDPYICGV--CGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       154 ~~PY~C~V--CGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..||.|++  ||+.|.+...|.+|.++ |..|+
T Consensus        90 ~~~~~C~~~~C~~~f~~~~~L~~H~~~-H~~~k  121 (124)
T 1ubd_C           90 DRPYVCPFDGCNKKFAQSTNLKSHILT-HAKAK  121 (124)
T ss_dssp             CCCCCCCSTTCCCCCSSTTTTHHHHHH-HC---
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHH-Hcccc
Confidence            35677754  77777777777777654 55443

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=94.83  E-value=0.013  Score=42.19  Aligned_cols=25  Identities=32%  Similarity=0.570  Sum_probs=16.6

Q ss_pred             CCCeeccc--CCCCCCChHHHHHHHHH
Q 014872          154 NDPYICGV--CGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       154 ~~PY~C~V--CGRkf~T~~kL~kHFKQ  178 (417)
                      .+||.|++  ||+.|.+...|.+|.+.
T Consensus        29 ~~~~~C~~~~C~~~f~~~~~l~~H~~~   55 (85)
T 2j7j_A           29 QLPYECPHEGCDKRFSLPSRLKRHEKV   55 (85)
T ss_dssp             TCCEECCSTTCCCEESSHHHHHHHHHH
T ss_pred             CCCeeCCCCCCcCccCCHHHHHHHHHH
Confidence            46777766  77777777777777643

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=94.81  E-value=0.011  Score=42.32  Aligned_cols=25  Identities=24%  Similarity=0.648  Sum_probs=22.1

Q ss_pred             CCCCeeccc--CCCCCCChHHHHHHHH
Q 014872          153 PNDPYICGV--CGRKCKTNLDLKKHFK  177 (417)
Q Consensus       153 p~~PY~C~V--CGRkf~T~~kL~kHFK  177 (417)
                      ...||.|.+  ||+.|.+...|.+|.+
T Consensus        44 ~~~~~~C~~~~C~k~f~~~~~l~~H~~   70 (72)
T 2epa_A           44 GEKPFSCSWKGCERRFARSDELSRHRR   70 (72)
T ss_dssp             SSCSEECCCTTCCCEESSHHHHHHHTT
T ss_pred             CCCCccCCCCCCCcccCCHHHHHhHhh
Confidence            357899976  9999999999999975

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=94.79  E-value=0.02  Score=43.38  Aligned_cols=32  Identities=31%  Similarity=0.661  Sum_probs=24.2

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      ...||.|.+||+.|.+...|.+|.+ .|..++.
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~   45 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHER-THTDERP   45 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHH-HHCCSCC
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHH-HcCCCCC
Confidence            4568889889888888888888876 4555443

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=94.70  E-value=0.012  Score=49.23  Aligned_cols=51  Identities=20%  Similarity=0.395  Sum_probs=28.8

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhhhhccccchhHHHHHHh
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSLKGKKRQKYKERY  206 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnrL~S~KGkrR~rl~~~~  206 (417)
                      ..||.|++||+.|.+...|.+|.+. |..++.-+...... ....+..|...+
T Consensus       103 ~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~-~f~~~~~L~~H~  153 (190)
T 2i13_A          103 EKPYACPECGKSFSQLAHLRAHQRT-HTGEKPYKCPECGK-SFSREDNLHTHQ  153 (190)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHH-HHCCCCEECTTTCC-EESCHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHH-hCCCCCeECCCCCc-ccCCHHHHHHHH
Confidence            4677888888888888888887753 54444333333322 233444444443

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=94.59  E-value=0.022  Score=43.56  Aligned_cols=29  Identities=24%  Similarity=0.597  Sum_probs=17.6

Q ss_pred             CCCeeccc--CCCCCCChHHHHHHHHHhhhhh
Q 014872          154 NDPYICGV--CGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       154 ~~PY~C~V--CGRkf~T~~kL~kHFKQLHERE  183 (417)
                      ..||.|.+  ||+.|.+...|.+|.+ .|..+
T Consensus         4 ~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~   34 (119)
T 2jp9_A            4 KRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGE   34 (119)
T ss_dssp             SCCBCCCSTTSCCCBSCHHHHHHHHH-HHHTT
T ss_pred             CeeeeCCCCCCcchhCCHHHHHHHHH-hhCCC
Confidence            35666665  6666666666666655 34443

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=94.51  E-value=0.015  Score=46.96  Aligned_cols=33  Identities=18%  Similarity=0.131  Sum_probs=28.7

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      ...+|.|..||+.|.+...|.+|.+..|..++.
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~   54 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPE   54 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTT
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcc
Confidence            456899999999999999999999998987654

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.41  E-value=0.021  Score=45.86  Aligned_cols=28  Identities=32%  Similarity=0.846  Sum_probs=25.4

Q ss_pred             CCCCeeccc--CCCCCCChHHHHHHHHHhh
Q 014872          153 PNDPYICGV--CGRKCKTNLDLKKHFKQLH  180 (417)
Q Consensus       153 p~~PY~C~V--CGRkf~T~~kL~kHFKQLH  180 (417)
                      ...||.|++  ||+.|.+...|.+|.+..|
T Consensus       125 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A          125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             SCCCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCCCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence            357899999  9999999999999999876

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=94.40  E-value=0.0081  Score=42.97  Aligned_cols=33  Identities=9%  Similarity=0.155  Sum_probs=25.5

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLN  189 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLn  189 (417)
                      .+.||.|++||+.|.+...|.    .+|..|+.-++.
T Consensus        11 ~~k~~~C~~C~k~F~~~~~l~----~~H~~~k~~~C~   43 (62)
T 1vd4_A           11 NRASFKCPVCSSTFTDLEANQ----LFDPMTGTFRCT   43 (62)
T ss_dssp             SSSEEECSSSCCEEEHHHHHH----HEETTTTEEBCS
T ss_pred             CCCCccCCCCCchhccHHHhH----hhcCCCCCEECC
Confidence            467999999999999887775    788877654333

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.31  E-value=0.016  Score=50.16  Aligned_cols=35  Identities=29%  Similarity=0.495  Sum_probs=29.7

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhhhhHHHHH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKL  188 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRL  188 (417)
                      ..||.|..||+.|.+...|..|++.-.-+.|.|+|
T Consensus        48 ekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l   82 (124)
T 1zr9_A           48 GGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQL   82 (124)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHH
T ss_pred             CcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHh
Confidence            46999999999999999999999887666665555

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=94.30  E-value=0.0094  Score=48.18  Aligned_cols=29  Identities=31%  Similarity=0.772  Sum_probs=18.5

Q ss_pred             CCCeeccc--CCCCCCChHHHHHHHHHhhhhh
Q 014872          154 NDPYICGV--CGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       154 ~~PY~C~V--CGRkf~T~~kL~kHFKQLHERE  183 (417)
                      ..||.|.+  ||+.|.+...|.+|.+ +|..|
T Consensus       118 ~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~  148 (155)
T 2rpc_A          118 EKPFKCEFEGCDRRFANSSDRKKHMH-VHTSD  148 (155)
T ss_dssp             SCSBCCSSTTCCCCBSSHHHHHHSST-TTTSC
T ss_pred             CCCccCCCCCCCCccCCHHHHHHHHH-HhcCC
Confidence            35677776  7777777777777764 45544

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=94.14  E-value=0.032  Score=40.04  Aligned_cols=27  Identities=30%  Similarity=0.566  Sum_probs=21.4

Q ss_pred             Ceec--ccCCCCCCChHHHHHHHHHhhhh
Q 014872          156 PYIC--GVCGRKCKTNLDLKKHFKQLHER  182 (417)
Q Consensus       156 PY~C--~VCGRkf~T~~kL~kHFKQLHER  182 (417)
                      ||.|  +.||+.|.+...|.+|.+.-+..
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~   29 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQ   29 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTT
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCC
Confidence            6888  77888888888888888776664

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=93.74  E-value=0.034  Score=41.34  Aligned_cols=31  Identities=23%  Similarity=0.468  Sum_probs=22.1

Q ss_pred             CCCCeeccc--CCCCCCChHHHHHHHHHhhhhhH
Q 014872          153 PNDPYICGV--CGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       153 p~~PY~C~V--CGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ...+|.|.+  ||+.|.+...|.+|.+. |..++
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~   44 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRT-HTGEK   44 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHH-HSCCC
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHH-hCCCC
Confidence            445788886  88888888888888763 55443

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=93.71  E-value=0.03  Score=40.81  Aligned_cols=32  Identities=31%  Similarity=0.703  Sum_probs=25.1

Q ss_pred             CCCCeecc--cCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          153 PNDPYICG--VCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       153 p~~PY~C~--VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      ...||.|+  +||+.|.+...|.+|.+ .|..++.
T Consensus        32 ~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~   65 (89)
T 2wbs_A           32 GEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRP   65 (89)
T ss_dssp             SSCCEECCSTTTCCEESSHHHHHHHHH-HHHCCCC
T ss_pred             CCCCcCCCCCCCCCccCCHHHHHHHHH-HcCCCCC
Confidence            45789997  69999999999999974 6766544

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.32  E-value=0.001  Score=46.86  Aligned_cols=30  Identities=13%  Similarity=0.264  Sum_probs=23.5

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..||.|.+||+.|.+...|.+|.+ +|..|+
T Consensus        37 ~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~~   66 (73)
T 2ctu_A           37 RKTPMCEKCRKDSCQEAALNKDEG-NESGKK   66 (73)
T ss_dssp             SSSCCCHHHHHTCSCCCSSCCCSS-CCCCCC
T ss_pred             CCCCCCCCCChhhcCHHHHHHHHH-hhcCCC
Confidence            478999999999999999998865 465543

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=92.65  E-value=0.056  Score=41.86  Aligned_cols=23  Identities=22%  Similarity=0.540  Sum_probs=11.9

Q ss_pred             CCeecc--cCCCCCCChHHHHHHHH
Q 014872          155 DPYICG--VCGRKCKTNLDLKKHFK  177 (417)
Q Consensus       155 ~PY~C~--VCGRkf~T~~kL~kHFK  177 (417)
                      .||.|+  .||+.|.+...|.+|.+
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~   28 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNSAMRKHLH   28 (124)
T ss_dssp             -CEECCSTTCCCEESSHHHHHHHHG
T ss_pred             CcccCCCCCCcCccCCHHHHHHHHH
Confidence            455555  45555555555555543

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=91.68  E-value=0.083  Score=44.12  Aligned_cols=33  Identities=33%  Similarity=0.617  Sum_probs=19.0

Q ss_pred             CCCCCeec--ccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          152 VPNDPYIC--GVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       152 ~p~~PY~C--~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      ...+||.|  +.||+.|.+...|..|.+ .|..++.
T Consensus         8 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~-~h~~~~~   42 (190)
T 1tf6_A            8 VVYKRYICSFADCGAAYNKNWKLQAHLC-KHTGEKP   42 (190)
T ss_dssp             --CCCCBCSSTTTCCBCSSHHHHHHHHH-HHHCCCS
T ss_pred             CCCcceeCCCCCCcchhCCHHHHHHHHH-hcCCCCC
Confidence            34456666  467777777777777764 3544443

>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}

Probab=91.59  E-value=0.36  Score=40.61  Aligned_cols=77  Identities=21%  Similarity=0.157  Sum_probs=53.7

Q ss_pred             chHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCC---cchHHHHHHHHHcCCcEEEEcCC-CCcccc
Q 014872          229 LGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDD---NDFKEMLRKARDANLGTVVVGDS-NRGLGQ  304 (417)
Q Consensus       229 LA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDD---sdF~~~Lr~AR~~~v~TVVVGd~-~~~L~R  304 (417)
                      ++..|.+.|..|..+.+.+...    . +....+..+ +++|++|-+   .+...+++.|+++|+++|.|.+. .+.|.+
T Consensus        57 ~~~~l~~~g~~~~~~~~~~~~~----~-~~~~~~~~~-d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~  130 (187)
T 3sho_A           57 LGHGLNSLGIRTTVLTEGGSTL----T-ITLANLRPT-DLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPAR  130 (187)
T ss_dssp             HHHHHHHTTCCEEEECCCTHHH----H-HHHHTCCTT-EEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred             HHHHHHhcCCCEEEecCCchhH----H-HHHhcCCCC-CEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchh
Confidence            4667889999999987322211    1 111123333 677777765   35667788999999999999996 468999


Q ss_pred             ccccccc
Q 014872          305 HADLWVP  311 (417)
Q Consensus       305 ~ADl~fS  311 (417)
                      .||..+.
T Consensus       131 ~ad~~l~  137 (187)
T 3sho_A          131 IADHVLV  137 (187)
T ss_dssp             HCSEEEE
T ss_pred             hCcEEEE
Confidence            9998775

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=90.88  E-value=0.12  Score=43.19  Aligned_cols=29  Identities=28%  Similarity=0.699  Sum_probs=24.7

Q ss_pred             CCCCeecc--cCCCCCCChHHHHHHHHHhhh
Q 014872          153 PNDPYICG--VCGRKCKTNLDLKKHFKQLHE  181 (417)
Q Consensus       153 p~~PY~C~--VCGRkf~T~~kL~kHFKQLHE  181 (417)
                      ...||.|.  .||+.|.+...|.+|.+..|.
T Consensus        69 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~   99 (190)
T 1tf6_A           69 GEKNFTCDSDGCDLRFTTKANMKKHFNRFHN   99 (190)
T ss_dssp             TCCCEECCSSSCCCEESCHHHHHHHHHTTSS
T ss_pred             CCCceeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence            34789999  899999999999999988883

>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}

Probab=90.40  E-value=0.6  Score=42.27  Aligned_cols=70  Identities=13%  Similarity=0.219  Sum_probs=54.6

Q ss_pred             CchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhh--CCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCCC
Q 014872          228 GLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMS--SGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSN  299 (417)
Q Consensus       228 GLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~--rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~~  299 (417)
                      |+..+++..|+.+.......+++  .-..+++.++.  .+++.||++.+......+++.++++|+..|+++...
T Consensus        25 g~~~~a~~~g~~~~~~~~~~~~~--~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~   96 (350)
T 3h75_A           25 FMQAAARDLGLDLRILYAERDPQ--NTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPL   96 (350)
T ss_dssp             HHHHHHHHHTCEEEEEECTTCHH--HHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCC
T ss_pred             HHHHHHHHcCCeEEEEECCCCHH--HHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCC
Confidence            67778888899998775444333  22456677777  599999999877778899999999999999998753

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.29  E-value=0.16  Score=38.38  Aligned_cols=23  Identities=22%  Similarity=0.458  Sum_probs=22.2

Q ss_pred             CCeecccCCCCCCChHHHHHHHH
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFK  177 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFK  177 (417)
                      .+|.|+-||+.|+-.+.|++|.|
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            68999999999999999999998

>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}

Probab=89.88  E-value=1.4  Score=38.16  Aligned_cols=71  Identities=11%  Similarity=0.115  Sum_probs=53.5

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeC-CcchHHHHHHHHHcCCcEEEEcCCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSD-DNDFKEMLRKARDANLGTVVVGDSN  299 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSD-DsdF~~~Lr~AR~~~v~TVVVGd~~  299 (417)
                      .|+..++++.|+.+.......+..  .....+..++.++++.||+..- ......+++.+++.++..|+++...
T Consensus        28 ~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~   99 (293)
T 3l6u_A           28 NAFKAEAKANKYEALVATSQNSRI--SEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMI   99 (293)
T ss_dssp             HHHHHHHHHTTCEEEEEECSSCHH--HHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCC
T ss_pred             HHHHHHHHHcCCEEEEECCCCCHH--HHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCCC
Confidence            467788889999998775544333  2345566678899999998764 4556689999999999999998743

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=89.84  E-value=0.12  Score=35.41  Aligned_cols=17  Identities=18%  Similarity=0.227  Sum_probs=14.5

Q ss_pred             CCCCeecccCCCCCCCh
Q 014872          153 PNDPYICGVCGRKCKTN  169 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~  169 (417)
                      ...||.|.+||+.|.++
T Consensus        38 ~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A           38 SERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             CCCCCCSSSSCCSSCCC
T ss_pred             CCCCccCCCCCCCCCCC
Confidence            35799999999999864

>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}

Probab=89.81  E-value=0.96  Score=39.27  Aligned_cols=68  Identities=19%  Similarity=0.177  Sum_probs=53.5

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+.......+...  ....+..+.+++++.||+.+-+.  ...++.+++.|+..|+++..
T Consensus        27 ~gi~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~l~~~~iPvV~i~~~   94 (276)
T 3jy6_A           27 KGISSILESRGYIGVLFDANADIER--EKTLLRAIGSRGFDGLILQSFSN--PQTVQEILHQQMPVVSVDRE   94 (276)
T ss_dssp             HHHHHHHHTTTCEEEEEECTTCHHH--HHHHHHHHHTTTCSEEEEESSCC--HHHHHHHHTTSSCEEEESCC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCHHH--HHHHHHHHHhCCCCEEEEecCCc--HHHHHHHHHCCCCEEEEecc
Confidence            3677888999999988765544332  23455667789999999998877  88999999999999999874

>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}

Probab=88.71  E-value=1  Score=38.42  Aligned_cols=70  Identities=19%  Similarity=0.226  Sum_probs=52.4

Q ss_pred             CchHHHHhcceEEEEeCC--CchhHHHHHHHHHHHhhhCC-cceEEEEeCC-cchHHHHHHHHHcCCcEEEEcCCC
Q 014872          228 GLGSELRRAGVFVKTVRD--KPQAADWALKRQMQHSMSSG-VDWMFLVSDD-NDFKEMLRKARDANLGTVVVGDSN  299 (417)
Q Consensus       228 GLA~ELkRAGV~VrtV~d--KPqAAD~ALkrhm~~~m~rg-v~cLvLVSDD-sdF~~~Lr~AR~~~v~TVVVGd~~  299 (417)
                      |+..++++.|+.+.....  ..+.+  .....+..++.++ ++.||+.+-+ ......++.+++.++..|+++...
T Consensus        21 gi~~~~~~~g~~~~~~~~~~~~~~~--~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~   94 (276)
T 3ksm_A           21 GAQKAADEAGVTLLHRSTKDDGDIA--GQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDL   94 (276)
T ss_dssp             HHHHHHHHHTCEEEECCCSSTTCHH--HHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCC
T ss_pred             HHHHHHHHcCCEEEEECCCCCCCHH--HHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEecCC
Confidence            677788889999987742  12222  2345566678888 9999998854 467889999999999999998743

>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*

Probab=88.69  E-value=0.72  Score=39.44  Aligned_cols=70  Identities=16%  Similarity=0.126  Sum_probs=52.5

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+.......+..  .....+..+.+.+++.||+.+-+..-.+.++.+++.|+..|+++..
T Consensus        22 ~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~   91 (272)
T 3o74_A           22 KQLEQGARARGYQLLIASSDDQPD--SERQLQQLFRARRCDALFVASCLPPEDDSYRELQDKGLPVIAIDRR   91 (272)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCHH--HHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHTTCCEEEESSC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCHH--HHHHHHHHHHHcCCCEEEEecCccccHHHHHHHHHcCCCEEEEccC
Confidence            366778889999998775544333  1244556677899999999887644467888999999999999874

>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}

Probab=88.12  E-value=1.1  Score=39.66  Aligned_cols=95  Identities=16%  Similarity=0.328  Sum_probs=64.2

Q ss_pred             chHHHHHHHhhcC-----CC-C---CCC--------chHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEE
Q 014872          210 NDKYNEAARSLLK-----PK-V---GYG--------LGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLV  272 (417)
Q Consensus       210 ~~KY~~AArevL~-----PK-v---GYG--------LA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLV  272 (417)
                      ....++++..+..     .+ +   |.|        ++..|.+.|..|..+.+.-...      .....+..+ +++|++
T Consensus        41 ~~~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~~------~~~~~~~~~-DlvI~i  113 (220)
T 3etn_A           41 TDAYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQH------GDLGILQEN-DLLLLI  113 (220)
T ss_dssp             CTHHHHHHHHHHHHTTTTCCCEEEECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGGB------TGGGGCCTT-CEEEEE
T ss_pred             HHHHHHHHHHHHhHhhccCCEEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCCHHHHH------hhhccCCCC-CEEEEE
Confidence            4567777776665     32 2   544        5667889999999886442111      000122333 677888


Q ss_pred             eCC---cchHHHHHHHHH--cCCcEEEEcCC-CCccccccccccc
Q 014872          273 SDD---NDFKEMLRKARD--ANLGTVVVGDS-NRGLGQHADLWVP  311 (417)
Q Consensus       273 SDD---sdF~~~Lr~AR~--~~v~TVVVGd~-~~~L~R~ADl~fS  311 (417)
                      |-+   .+...+++.|++  +|+++|.|.+. .+.|.+.||..+.
T Consensus       114 S~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~  158 (220)
T 3etn_A          114 SNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLS  158 (220)
T ss_dssp             CSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEE
T ss_pred             cCCCCCHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEE
Confidence            764   456677889999  99999999986 4789999998775

>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}

Probab=87.70  E-value=1.7  Score=37.51  Aligned_cols=97  Identities=12%  Similarity=0.141  Sum_probs=63.7

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCc----chHHHHHHHHHcCCcEEEEcCCCCcc
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDN----DFKEMLRKARDANLGTVVVGDSNRGL  302 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDs----dF~~~Lr~AR~~~v~TVVVGd~~~~L  302 (417)
                      .|+..++++.|+.+..........  .....++.++.++++-||+.+-++    .-.++++.+++.++..|+++......
T Consensus        35 ~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~  112 (298)
T 3tb6_A           35 RGIESYLSEQGYSMLLTSTNNNPD--NERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINASYAEL  112 (298)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCHH--HHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSCCTTC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCChH--HHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecCcCCC
Confidence            377889999999998875443333  224456667789999999987654    34578899999999999998743221


Q ss_pred             ccccccccchhhhhcCcccccccccC
Q 014872          303 GQHADLWVPWIEVENGELTERDLVPR  328 (417)
Q Consensus       303 ~R~ADl~fSW~eV~~Gk~~~~~~~~~  328 (417)
                       .  --++..+....|+.--+-|..+
T Consensus       113 -~--~~~V~~d~~~~~~~a~~~L~~~  135 (298)
T 3tb6_A          113 -A--APSFTLDDVKGGMMAAEHLLSL  135 (298)
T ss_dssp             -S--SCEEEECHHHHHHHHHHHHHHT
T ss_pred             -C--CCEEEeCcHHHHHHHHHHHHHC
Confidence             1  1234444455554444444443

>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}

Probab=87.69  E-value=1.5  Score=38.00  Aligned_cols=95  Identities=15%  Similarity=0.070  Sum_probs=63.8

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCC-cchHHHHHHHHHcCCcEEEEcCCCCccccc
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDD-NDFKEMLRKARDANLGTVVVGDSNRGLGQH  305 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDD-sdF~~~Lr~AR~~~v~TVVVGd~~~~L~R~  305 (417)
                      .|+..++++.|+.+.......+...  -...++.++.++++-||+..-+ ......++.++++|+..|+++....   . 
T Consensus        25 ~gi~~~a~~~g~~~~~~~~~~~~~~--~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~---~-   98 (291)
T 3l49_A           25 QAQIAEIERLGGTAIALDAGRNDQT--QVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTATP---H-   98 (291)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCHHH--HHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCCT---T-
T ss_pred             HHHHHHHHHcCCEEEEEcCCCCHHH--HHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCCC---C-
Confidence            3677888999999988754433331  2344566778999999988766 4577899999999999999986431   1 


Q ss_pred             cccccchhhhhcCccccccccc
Q 014872          306 ADLWVPWIEVENGELTERDLVP  327 (417)
Q Consensus       306 ADl~fSW~eV~~Gk~~~~~~~~  327 (417)
                      ..-++..+....|+.--+-|..
T Consensus        99 ~~~~V~~D~~~~g~~~~~~l~~  120 (291)
T 3l49_A           99 AINNTTSNNYSIGAELALQMVA  120 (291)
T ss_dssp             CSEEEEECHHHHHHHHHHHHHH
T ss_pred             cCceEecChHHHHHHHHHHHHH
Confidence            1224445555555544444444

>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*

Probab=87.36  E-value=1.6  Score=39.25  Aligned_cols=97  Identities=10%  Similarity=0.116  Sum_probs=60.7

Q ss_pred             CCchHHHHhcceEEEEeC-CCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcCCCCcccc
Q 014872          227 YGLGSELRRAGVFVKTVR-DKPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGDSNRGLGQ  304 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~-dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd~~~~L~R  304 (417)
                      -|+..+++..|+.+.... ....++  .-..+++.++.+|++.||+++-+++ ...+++.|+++|+..|+++.....-. 
T Consensus        23 ~g~~~~~~~~g~~~~~~~~~~~d~~--~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~d~~~~~~~-   99 (316)
T 1tjy_A           23 NGAQEAGKALGIDVTYDGPTEPSVS--GQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPEC-   99 (316)
T ss_dssp             HHHHHHHHHHTCEEEECCCSSCCHH--HHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCCCGGG-
T ss_pred             HHHHHHHHHhCCEEEEECCCCCCHH--HHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEecCCCCCCC-
Confidence            356677888898887652 222222  1245667778899999999876554 57899999999999888865321111 


Q ss_pred             cccccc-chhhhhcCccccccccc
Q 014872          305 HADLWV-PWIEVENGELTERDLVP  327 (417)
Q Consensus       305 ~ADl~f-SW~eV~~Gk~~~~~~~~  327 (417)
                       .+.++ .-+....|+.--+.|..
T Consensus       100 -~~~~v~~~D~~~~g~~~~~~L~~  122 (316)
T 1tjy_A          100 -RSYYINQGTPKQLGSMLVEMAAH  122 (316)
T ss_dssp             -CSEEEESCCHHHHHHHHHHHHHH
T ss_pred             -ceEEEecCCHHHHHHHHHHHHHH
Confidence             23334 34444455544444443

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.09  E-value=0.46  Score=35.61  Aligned_cols=42  Identities=19%  Similarity=0.210  Sum_probs=30.9

Q ss_pred             ccCccCCCCCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhhh
Q 014872          147 RRGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRM  191 (417)
Q Consensus       147 ~~G~v~p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnrL  191 (417)
                      +....-|..||.|+.||..| ....|..|.  .|.-++.-.....
T Consensus         8 H~~~~c~~r~~~C~~C~~~~-~~~~L~~H~--~~c~~~~~~C~~C   49 (75)
T 2d9k_A            8 HEETECPLRLAVCQHCDLEL-SILKLKEHE--DYCGARTELCGNC   49 (75)
T ss_dssp             CCCCCCCCCCEECSSSCCEE-CHHHHHHHH--HHHHHCEEECSSS
T ss_pred             hCcccCCCcccCCcccChHh-hHHHHHHHH--hHcCCCceEcccC
Confidence            33444578899999999999 489999997  6777776444443

>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A

Probab=87.07  E-value=2.4  Score=37.00  Aligned_cols=67  Identities=16%  Similarity=0.192  Sum_probs=51.4

Q ss_pred             CchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcC
Q 014872          228 GLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       228 GLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd  297 (417)
                      |+..+++..|+.+..... .+.+  .-...++.++.++++-||+.+-+.+ ...+++.++++|+..|+++.
T Consensus        23 gi~~~a~~~g~~~~~~~~-~~~~--~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~   90 (306)
T 8abp_A           23 FADKAGKDLGFEVIKIAV-PDGE--KTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD   90 (306)
T ss_dssp             HHHHHHHHHTEEEEEEEC-CSHH--HHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred             HHHHHHHHcCCEEEEeCC-CCHH--HHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHHCCCcEEEeCC
Confidence            667788888999987644 3332  2345677788899999999986654 56679999999999999984

>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*

Probab=87.00  E-value=1.8  Score=38.34  Aligned_cols=96  Identities=14%  Similarity=0.238  Sum_probs=64.4

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCc-chHHHHHHHHHcCCcEEEEcCCCCccccc
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDN-DFKEMLRKARDANLGTVVVGDSNRGLGQH  305 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDs-dF~~~Lr~AR~~~v~TVVVGd~~~~L~R~  305 (417)
                      .|+..++++.|+.+.......+..  .-...+..++.++++-||+..-+. .+.++++.+++.|+..|+++.....  ..
T Consensus        22 ~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~--~~   97 (313)
T 3m9w_A           22 DIFVKKAESLGAKVFVQSANGNEE--TQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMIND--AD   97 (313)
T ss_dssp             HHHHHHHHHTSCEEEEEECTTCHH--HHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCCTT--SC
T ss_pred             HHHHHHHHHcCCEEEEECCCCCHH--HHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcCCC--CC
Confidence            467888999999988765433332  123455667789999999987655 4678999999999999999874322  12


Q ss_pred             cccccchhhhhcCcccccccc
Q 014872          306 ADLWVPWIEVENGELTERDLV  326 (417)
Q Consensus       306 ADl~fSW~eV~~Gk~~~~~~~  326 (417)
                      .|.++.-+....|+.--+.|.
T Consensus        98 ~~~~V~~D~~~~g~~a~~~L~  118 (313)
T 3m9w_A           98 IDFYISFDNEKVGELQAKALV  118 (313)
T ss_dssp             CSEEEEECHHHHHHHHHHHHH
T ss_pred             ceEEEecCHHHHHHHHHHHHH
Confidence            233444455555555444444

>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*

Probab=86.93  E-value=1.9  Score=37.37  Aligned_cols=70  Identities=11%  Similarity=0.157  Sum_probs=49.2

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCc-chHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDN-DFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDs-dF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+.+.....+..  ...+.+..+..++++-|++.+-+. .+.++++.+++.++..|+++..
T Consensus        22 ~gi~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~   92 (290)
T 2fn9_A           22 ETAKQRAEQLGYEATIFDSQNDTA--KESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRG   92 (290)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCHH--HHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEESSC
T ss_pred             HHHHHHHHHcCCEEEEeCCCCCHH--HHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecC
Confidence            356677888888887664332222  123445566789999999986544 4567899999999999999864

>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}

Probab=86.50  E-value=2  Score=37.53  Aligned_cols=70  Identities=11%  Similarity=0.211  Sum_probs=49.9

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCc-chHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDN-DFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDs-dF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+-......+...  -.+.++.+++.+++-|++.+-+. ...+.++.++++|+..|+++..
T Consensus        21 ~gi~~~~~~~g~~~~~~~~~~~~~~--~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~   91 (283)
T 2ioy_A           21 NGAEEKAKELGYKIIVEDSQNDSSK--ELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRS   91 (283)
T ss_dssp             HHHHHHHHHHTCEEEEEECTTCHHH--HHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC
T ss_pred             HHHHHHHHhcCcEEEEecCCCCHHH--HHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHHHHCCCeEEEecCC
Confidence            3667788888998876643333221  23456667789999999876543 4567889999999999999763

>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}

Probab=86.46  E-value=3  Score=36.49  Aligned_cols=97  Identities=11%  Similarity=0.128  Sum_probs=61.8

Q ss_pred             CCchHHHHhcceEEEEeC-CCchhHHHHHHHHHHHhhhCCcceEEEEeCC-cchHHHHHHHHHcCCcEEEEcCCCCcccc
Q 014872          227 YGLGSELRRAGVFVKTVR-DKPQAADWALKRQMQHSMSSGVDWMFLVSDD-NDFKEMLRKARDANLGTVVVGDSNRGLGQ  304 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~-dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDD-sdF~~~Lr~AR~~~v~TVVVGd~~~~L~R  304 (417)
                      -|+..++++.|+.+..+. ...+..  ...+.+..++.++++-||+.+-+ ..+...++.++++|+..|+++.......+
T Consensus        24 ~gi~~~a~~~g~~~~~~~~~~~~~~--~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~  101 (305)
T 3g1w_A           24 KGFEDAAQALNVTVEYRGAAQYDIQ--EQITVLEQAIAKNPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAPDSHA  101 (305)
T ss_dssp             HHHHHHHHHHTCEEEEEECSSSCHH--HHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTTSCC
T ss_pred             HHHHHHHHHcCCEEEEeCCCcCCHH--HHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCce
Confidence            367788899999998742 222222  23455666778999999988744 45788999999999999999874322222


Q ss_pred             ccccccchhhhhcCccccccccc
Q 014872          305 HADLWVPWIEVENGELTERDLVP  327 (417)
Q Consensus       305 ~ADl~fSW~eV~~Gk~~~~~~~~  327 (417)
                      ..  ++.-+....|+.--+-|..
T Consensus       102 ~~--~V~~d~~~~g~~~~~~l~~  122 (305)
T 3g1w_A          102 HS--FLGTNNYNAGMNAAYKMAE  122 (305)
T ss_dssp             SC--EEECCHHHHHHHHHHHHHH
T ss_pred             eE--EECcCHHHHHHHHHHHHHH
Confidence            22  2333344444444344443

>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*

Probab=86.33  E-value=1.8  Score=38.33  Aligned_cols=98  Identities=13%  Similarity=0.226  Sum_probs=64.7

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCc-chHHHHHHHHHcCCcEEEEcCCCCccccc
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDN-DFKEMLRKARDANLGTVVVGDSNRGLGQH  305 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDs-dF~~~Lr~AR~~~v~TVVVGd~~~~L~R~  305 (417)
                      .|+..++++.|+.+..........  .-...++.++.++++-||+.+-++ .....++.++++|+..|+++...... ..
T Consensus        23 ~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~-~~   99 (330)
T 3uug_A           23 NNIVKQLQEAGYKTDLQYADDDIP--NQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNS-GD   99 (330)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCHH--HHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSCCCSC-TT
T ss_pred             HHHHHHHHHcCCEEEEeeCCCCHH--HHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCCCCCC-Cc
Confidence            367788889999988765333332  224556667789999999987665 57889999999999999998743221 11


Q ss_pred             cccccchhhhhcCccccccccc
Q 014872          306 ADLWVPWIEVENGELTERDLVP  327 (417)
Q Consensus       306 ADl~fSW~eV~~Gk~~~~~~~~  327 (417)
                      .+.++.-+....|+.--+.|..
T Consensus       100 ~~~~V~~D~~~~g~~a~~~l~~  121 (330)
T 3uug_A          100 VSYYATFDNFQVGVLQATSITD  121 (330)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHH
T ss_pred             eeEEEEeCHHHHHHHHHHHHHH
Confidence            2334444555555544444444

>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*

Probab=86.29  E-value=1.9  Score=37.44  Aligned_cols=70  Identities=14%  Similarity=0.211  Sum_probs=49.9

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCc-chHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDN-DFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDs-dF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+.......+..  .-...+..+..++++-|++.+-+. .....++.++++++..|+++..
T Consensus        21 ~gi~~~~~~~g~~~~~~~~~~~~~--~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~i~~~   91 (271)
T 2dri_A           21 DGAQKEADKLGYNLVVLDSQNNPA--KELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ   91 (271)
T ss_dssp             HHHHHHHHHHTCEEEEEECTTCHH--HHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC
T ss_pred             HHHHHHHHHcCcEEEEeCCCCCHH--HHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCcEEEecCC
Confidence            467788889999887654332222  123455667789999999976443 4457889999999999999863

>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*

Probab=85.01  E-value=1.9  Score=37.94  Aligned_cols=70  Identities=10%  Similarity=0.099  Sum_probs=49.9

Q ss_pred             CCchHHHHhcceEEEEeC--CCchhHHHHHHHHHHHhhhCCcceEEEEeCCc-chHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVR--DKPQAADWALKRQMQHSMSSGVDWMFLVSDDN-DFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~--dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDs-dF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+....  ...++.  .-...++.++.++++-|++++-+. ...+.++.++++++..|+++..
T Consensus        21 ~gi~~~a~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~   93 (288)
T 1gud_A           21 KGIEDEAKTLGVSVDIFASPSEGDFQ--SQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEK   93 (288)
T ss_dssp             HHHHHHHHHHTCCEEEEECSSTTCHH--HHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHHTTCEEEEESSC
T ss_pred             HHHHHHHHHcCCEEEEeCCCCCCCHH--HHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEECCC
Confidence            367788899999887653  222222  123445667789999999986554 4567889999999999999763

>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*

Probab=84.84  E-value=2.8  Score=36.80  Aligned_cols=69  Identities=7%  Similarity=0.061  Sum_probs=47.7

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+.......++.  .....+..++.++++-||+.+-+.. .+.++.+++.++..|+++..
T Consensus        36 ~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~~~~~  104 (289)
T 2fep_A           36 RGIEDIATMYKYNIILSNSDQNME--KELHLLNTMLGKQVDGIVFMGGNIT-DEHVAEFKRSPVPIVLAASV  104 (289)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCHH--HHHHHHHHHHHTTCSEEEECCSCCC-HHHHHHHHHSSSCEEEESCC
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCHH--HHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHHHhcCCCEEEEccc
Confidence            466777888888887654332222  1234455667899999999875433 56788888899999999764

>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}

Probab=84.60  E-value=2.3  Score=37.23  Aligned_cols=69  Identities=14%  Similarity=0.133  Sum_probs=48.5

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHH---HHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKR---QMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkr---hm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+.......+..  ....   .++.++.++++-|++.+-+.+ .+.++.+++.++..|+++..
T Consensus        28 ~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~~~~~   99 (290)
T 2rgy_A           28 KQTDLELRAVHRHVVVATGCGEST--PREQALEAVRFLIGRDCDGVVVISHDLH-DEDLDELHRMHPKMVFLNRA   99 (290)
T ss_dssp             HHHHHHHHHTTCEEEEECCCSSSC--HHHHHHHHHHHHHHTTCSEEEECCSSSC-HHHHHHHHHHCSSEEEESSC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCchh--hhhhHHHHHHHHHhcCccEEEEecCCCC-HHHHHHHhhcCCCEEEEccc
Confidence            467778888898887654332222  1122   455567899999999876555 56788888899999999764

>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}

Probab=84.54  E-value=3  Score=37.52  Aligned_cols=70  Identities=10%  Similarity=0.059  Sum_probs=52.4

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+.......+...  -...++.+..++++-||+.+.+.+-..+...+++.++-.|+++..
T Consensus        83 ~gi~~~a~~~g~~~~~~~~~~~~~~--~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~  152 (338)
T 3dbi_A           83 FHAARMAEEKGRQLLLADGKHSAEE--ERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRR  152 (338)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTSHHH--HHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCChHH--HHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcCC
Confidence            3677888999999887754433321  233455667899999999987766677888899999999999864

>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}

Probab=84.54  E-value=2.9  Score=36.76  Aligned_cols=71  Identities=11%  Similarity=0.130  Sum_probs=52.9

Q ss_pred             CCchHHHHhcceEEEEeCCC--chhHHHHHHHHHHHhhhCCcceEEEEeC-CcchHHHHHHHHHcCCcEEEEcCCC
Q 014872          227 YGLGSELRRAGVFVKTVRDK--PQAADWALKRQMQHSMSSGVDWMFLVSD-DNDFKEMLRKARDANLGTVVVGDSN  299 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dK--PqAAD~ALkrhm~~~m~rgv~cLvLVSD-DsdF~~~Lr~AR~~~v~TVVVGd~~  299 (417)
                      .|+..+++..|+.+......  -+.+  ...+.++.++.++++.||+..- ...+...++.++++|+..|+++...
T Consensus        23 ~gi~~~a~~~g~~~~~~~~~~~~~~~--~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~   96 (297)
T 3rot_A           23 QGAKKAAEELKVDLQILAPPGANDVP--KQVQFIESALATYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRP   96 (297)
T ss_dssp             HHHHHHHHHHTCEEEEECCSSSCCHH--HHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCC
T ss_pred             HHHHHHHHHhCcEEEEECCCCcCCHH--HHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            46778888899999877532  1222  2345667778899999998764 4556889999999999999998643

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.52  E-value=0.11  Score=39.12  Aligned_cols=31  Identities=35%  Similarity=0.563  Sum_probs=25.6

Q ss_pred             cCCCCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          151 AVPNDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       151 v~p~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      .-|..||.|+.||+.|. ...|..|.+ +|..+
T Consensus        38 ~c~~~~~~C~~C~~~~~-~~~l~~H~~-~c~~~   68 (75)
T 2d9k_A           38 YCGARTELCGNCGRNVL-VKDLKTHPE-VCGRE   68 (75)
T ss_dssp             HHHHCEEECSSSCCEEE-TTGGGTHHH-HBTTB
T ss_pred             HcCCCceEcccCCCcCc-HHHHHHHHH-HccCC
Confidence            34778999999999987 599999975 57765

>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}

Probab=84.14  E-value=2.6  Score=36.48  Aligned_cols=70  Identities=10%  Similarity=0.193  Sum_probs=51.1

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSN  299 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~~  299 (417)
                      .|+..++++.|+.+..........  .....+..+.+++++-||+++-+.. ...++.++++|+..|+++...
T Consensus        33 ~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~~~~~~  102 (292)
T 3k4h_A           33 RGISSFAHVEGYALYMSTGETEEE--IFNGVVKMVQGRQIGGIILLYSREN-DRIIQYLHEQNFPFVLIGKPY  102 (292)
T ss_dssp             HHHHHHHHHTTCEEEECCCCSHHH--HHHHHHHHHHTTCCCEEEESCCBTT-CHHHHHHHHTTCCEEEESCCS
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCHH--HHHHHHHHHHcCCCCEEEEeCCCCC-hHHHHHHHHCCCCEEEECCCC
Confidence            467788999999998875544333  2234455567799999998765433 378889999999999998743

>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}

Probab=83.91  E-value=4.5  Score=34.81  Aligned_cols=69  Identities=10%  Similarity=0.069  Sum_probs=48.2

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHH-cCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARD-ANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~-~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+.......+..  .....++.+..++++-||+.+-+.+ ...+..+++ .++..|+++..
T Consensus        41 ~gi~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l~~~~~iPvV~~~~~  110 (296)
T 3brq_A           41 FHAARMAEEKGRQLLLADGKHSAE--EERQAIQYLLDLRCDAIMIYPRFLS-VDEIDDIIDAHSQPIMVLNRR  110 (296)
T ss_dssp             HHHHHHHHHTTCEEEEECCTTSHH--HHHHHHHHHHHTTCSEEEEECSSSC-HHHHHHHHHTCSSCEEEESCC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCHH--HHHHHHHHHHhcCCCEEEEecCCCC-hHHHHHHHhcCCCCEEEEccc
Confidence            356777888899888765443332  1233455667899999999876543 366788888 89999999763

>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*

Probab=83.90  E-value=2.9  Score=36.41  Aligned_cols=70  Identities=14%  Similarity=0.146  Sum_probs=48.8

Q ss_pred             CCchHHHHhcce-EEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGV-FVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV-~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+ .+.......+..  .....+..++.++++-||+.+-+.. ...+++.+++.++..|+++..
T Consensus        22 ~gi~~~a~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~   93 (309)
T 2fvy_A           22 KAIEQDAKAAPDVQLLMNDSQNDQS--KQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE   93 (309)
T ss_dssp             HHHHHHHHTCTTEEEEEEECTTCHH--HHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHHTTTCCEEEESSC
T ss_pred             HHHHHHHHhcCCeEEEEecCCCCHH--HHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHHHHCCCcEEEecCC
Confidence            366777888886 776653322221  1234455667899999999876554 467899999999999999764

>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}

Probab=83.69  E-value=2.4  Score=37.44  Aligned_cols=70  Identities=19%  Similarity=0.323  Sum_probs=50.1

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcc-hHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDND-FKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsd-F~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+........+.  ...+.+..++.++++-||+.+-+.. ..+.++.+++.++..|+++..
T Consensus        22 ~gi~~~a~~~g~~l~~~~~~~~~~--~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~   92 (306)
T 2vk2_A           22 NVAKSEAEKRGITLKIADGQQKQE--NQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS   92 (306)
T ss_dssp             HHHHHHHHHHTCEEEEEECTTCHH--HHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHHHTTCCEEEESSC
T ss_pred             HHHHHHHHHcCCEEEEeCCCCCHH--HHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHHCCCCEEEecCC
Confidence            356778888899888764332222  1234455667889999999876543 467889999999999999864

>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}

Probab=83.54  E-value=2.5  Score=36.27  Aligned_cols=69  Identities=9%  Similarity=0.068  Sum_probs=48.0

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+.......++.  .....+..+..++++-|++.+-+.+ ..+++.+++.++..|+++..
T Consensus        23 ~gi~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l~~~~iPvV~~~~~   91 (275)
T 3d8u_A           23 PSFQQALNKAGYQLLLGYSDYSIE--QEEKLLSTFLESRPAGVVLFGSEHS-QRTHQLLEASNTPVLEIAEL   91 (275)
T ss_dssp             HHHHHHHHHTSCEECCEECTTCHH--HHHHHHHHHHTSCCCCEEEESSCCC-HHHHHHHHHHTCCEEEESSS
T ss_pred             HHHHHHHHHCCCEEEEEcCCCCHH--HHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHHhCCCCEEEEeec
Confidence            466778888898877653332222  1234455667899999999875543 46788888899999999763

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=83.18  E-value=0.2  Score=35.61  Aligned_cols=20  Identities=10%  Similarity=0.375  Sum_probs=16.3

Q ss_pred             CCCCeecccCCCCCCChHHH
Q 014872          153 PNDPYICGVCGRKCKTNLDL  172 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL  172 (417)
                      ...||.|++||+.|.....+
T Consensus        36 ~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A           36 MTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             TTTEEBCSSSCCBCEECTTC
T ss_pred             CCCCEECCCCCCccccCccc
Confidence            35799999999999876554

>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}

Probab=83.00  E-value=2.8  Score=35.47  Aligned_cols=46  Identities=15%  Similarity=0.188  Sum_probs=36.4

Q ss_pred             cceEEEEeCC---cchHHHHHHHHHcCCcEEEEcCCC-Cccccc---cccccc
Q 014872          266 VDWMFLVSDD---NDFKEMLRKARDANLGTVVVGDSN-RGLGQH---ADLWVP  311 (417)
Q Consensus       266 v~cLvLVSDD---sdF~~~Lr~AR~~~v~TVVVGd~~-~~L~R~---ADl~fS  311 (417)
                      =+++|++|-+   .+-..+++.||++|++||.|.+.. +.|.+.   ||..+.
T Consensus       110 ~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~  162 (196)
T 2yva_A          110 GDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIR  162 (196)
T ss_dssp             TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEE
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEE
Confidence            4677888865   456778889999999999999964 577887   887764

>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*

Probab=82.37  E-value=3  Score=37.36  Aligned_cols=69  Identities=7%  Similarity=0.181  Sum_probs=47.2

Q ss_pred             CchHHHHhcceEEEEe--CCC--chhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          228 GLGSELRRAGVFVKTV--RDK--PQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       228 GLA~ELkRAGV~VrtV--~dK--PqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      |+..++++.|+.+...  ...  -+..  .-...++.++.++++.||+.++.......++.+.++++..|++.+.
T Consensus        65 gi~~~a~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~ip~V~~~~~  137 (342)
T 1jx6_A           65 SFEKRLYKLNINYQLNQVFTRPNADIK--QQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI  137 (342)
T ss_dssp             HHHHHHHHTTCCEEEEEEECCTTCCHH--HHHHHHHHHHHTTCSEEEECCSSSTTHHHHHHHHHHCSCEEEEETC
T ss_pred             HHHHHHHHcCCeEEEEecCCCCccCHH--HHHHHHHHHHhcCCCEEEEeCChHhHHHHHHHHHHcCCCEEEEecC
Confidence            7778889999876654  111  1111  1234455667899999999554444578899999999999988554

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.13  E-value=0.27  Score=34.25  Aligned_cols=23  Identities=17%  Similarity=0.355  Sum_probs=19.8

Q ss_pred             CCCCCeecccCCCCCCChHHHHH
Q 014872          152 VPNDPYICGVCGRKCKTNLDLKK  174 (417)
Q Consensus       152 ~p~~PY~C~VCGRkf~T~~kL~k  174 (417)
                      ....||.|.+||+.|.+...|.+
T Consensus        14 ~~~~~~~C~~C~k~f~~~~~l~~   36 (73)
T 2ctu_A           14 LGDRSQKCSKCGIIFIRRSTLSR   36 (73)
T ss_dssp             CCCSEEECSSSCCEEECCCCCCC
T ss_pred             CCCCCeeCCcccchhCCHHHhCc
Confidence            34679999999999999888876

>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*

Probab=82.12  E-value=4.5  Score=35.79  Aligned_cols=69  Identities=17%  Similarity=0.235  Sum_probs=48.9

Q ss_pred             CchHHHHhcceEEEEeC-CCchhHHHHHHHHHHHhhhCCcceEEEEeCCc-chHHHHHHHHHcCCcEEEEcCC
Q 014872          228 GLGSELRRAGVFVKTVR-DKPQAADWALKRQMQHSMSSGVDWMFLVSDDN-DFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       228 GLA~ELkRAGV~VrtV~-dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDs-dF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      |+..+++..|+.+.... +..+++  ...+.++.++.++++-||+.+-++ .+..+++.++++|+..|+++..
T Consensus        21 gi~~~~~~~g~~~~~~~~~~~~~~--~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~   91 (313)
T 2h3h_A           21 GVKAAGKALGVDTKFFVPQKEDIN--AQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTD   91 (313)
T ss_dssp             HHHHHHHHHTCEEEEECCSSSCHH--HHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC
T ss_pred             HHHHHHHHcCCEEEEECCCCCCHH--HHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEeCCC
Confidence            56677788898888763 222222  123455666789999999876544 4678899999999999999764

>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}

Probab=81.73  E-value=4.6  Score=34.78  Aligned_cols=60  Identities=22%  Similarity=0.404  Sum_probs=45.9

Q ss_pred             hHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhh-CCcceEEEEeCCcchHH-HHHHHHHcCCcEEE
Q 014872          230 GSELRRAGVFVKTVRDKPQAADWALKRQMQHSMS-SGVDWMFLVSDDNDFKE-MLRKARDANLGTVV  294 (417)
Q Consensus       230 A~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~-rgv~cLvLVSDDsdF~~-~Lr~AR~~~v~TVV  294 (417)
                      .+.++..||.|+|| ..||.    ||.-|+.+.. -++.-+|.|-||...++ ++|+.+..|....+
T Consensus        19 kdiikkngfkvrtv-rspqe----lkdsieelvkkynativvvvvddkewaekairfvkslgaqvli   80 (134)
T 2l69_A           19 KDIIKKNGFKVRTV-RSPQE----LKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLI   80 (134)
T ss_dssp             HHHHHHTTCEEEEE-CSHHH----HHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEE
T ss_pred             HHHHHhcCceEEEe-cCHHH----HHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEE
Confidence            46789999999999 55663    6777887776 55666678888888864 78888888876533

>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}

Probab=81.24  E-value=3.5  Score=36.33  Aligned_cols=69  Identities=14%  Similarity=0.153  Sum_probs=50.4

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..++++.|+.+.......+..  .....+..+..++++-||+++-+.+ .+.++.+++.|+..|+++..
T Consensus        47 ~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~i~~~  115 (305)
T 3huu_A           47 NGINQACNVRGYSTRMTVSENSGD--LYHEVKTMIQSKSVDGFILLYSLKD-DPIEHLLNEFKVPYLIVGKS  115 (305)
T ss_dssp             HHHHHHHHHHTCEEEECCCSSHHH--HHHHHHHHHHTTCCSEEEESSCBTT-CHHHHHHHHTTCCEEEESCC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCChH--HHHHHHHHHHhCCCCEEEEeCCcCC-cHHHHHHHHcCCCEEEECCC
Confidence            477889999999998875444333  1233445566799999999864433 27788899999999999874

>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A

Probab=80.85  E-value=2.1  Score=35.97  Aligned_cols=69  Identities=16%  Similarity=0.178  Sum_probs=50.5

Q ss_pred             chHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhh-CCcceEEEEeCCc---chHHHHHHHHHcCCcEEEEcCC-CCccc
Q 014872          229 LGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMS-SGVDWMFLVSDDN---DFKEMLRKARDANLGTVVVGDS-NRGLG  303 (417)
Q Consensus       229 LA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~-rgv~cLvLVSDDs---dF~~~Lr~AR~~~v~TVVVGd~-~~~L~  303 (417)
                      ++..|.+.|+.+..+.+. .            ... ..=+++|++|-+-   +-..+++.|+++|.++|.|.+. .+.|.
T Consensus        55 ~~~~l~~~g~~~~~~~~~-~------------~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~  121 (186)
T 1m3s_A           55 FAMRLMHMGFNAHIVGEI-L------------TPPLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIG  121 (186)
T ss_dssp             HHHHHHHTTCCEEETTST-T------------CCCCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHH
T ss_pred             HHHHHHhcCCeEEEeCcc-c------------ccCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCCCchH
Confidence            456678899999888553 1            122 2246777777654   4566788999999999999996 46889


Q ss_pred             ccccccc
Q 014872          304 QHADLWV  310 (417)
Q Consensus       304 R~ADl~f  310 (417)
                      +.||..+
T Consensus       122 ~~ad~~l  128 (186)
T 1m3s_A          122 KQADLII  128 (186)
T ss_dssp             HHCSEEE
T ss_pred             HhCCEEE
Confidence            9999766

>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}

Probab=80.63  E-value=6.4  Score=35.80  Aligned_cols=97  Identities=12%  Similarity=0.074  Sum_probs=60.9

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCCCCcccccc
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNRGLGQHA  306 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~~~~L~R~A  306 (417)
                      .|+..++++.|+.+..........  .....+..++.++++-||++..+.. ...++.+++.++-.|+|++.... ..  
T Consensus        90 ~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~~vdGiI~~~~~~~-~~~~~~l~~~~iPvV~i~~~~~~-~~--  163 (355)
T 3e3m_A           90 QSLTDVLEQGGLQLLLGYTAYSPE--REEQLVETMLRRRPEAMVLSYDGHT-EQTIRLLQRASIPIVEIWEKPAH-PI--  163 (355)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCHH--HHHHHHHHHHHTCCSEEEEECSCCC-HHHHHHHHHCCSCEEEESSCCSS-CS--
T ss_pred             HHHHHHHHHCCCEEEEEeCCCChH--HHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHHHHhCCCCEEEECCccCC-CC--
Confidence            367788899999887764332222  1234455667899999999876544 36788899999999999874321 11  


Q ss_pred             ccccchhhhhcCcccccccccCC
Q 014872          307 DLWVPWIEVENGELTERDLVPRT  329 (417)
Q Consensus       307 Dl~fSW~eV~~Gk~~~~~~~~~~  329 (417)
                      ..++.-+....|..--+-|..+.
T Consensus       164 ~~~V~~D~~~~~~~a~~~L~~~G  186 (355)
T 3e3m_A          164 GHTVGFSNERAAYDMTNALLARG  186 (355)
T ss_dssp             SEEEECCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEeChHHHHHHHHHHHHHCC
Confidence            12444444455544444444443

>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}

Probab=80.27  E-value=1.9  Score=37.57  Aligned_cols=70  Identities=19%  Similarity=0.201  Sum_probs=51.9

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSN  299 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~~  299 (417)
                      .|+..++++.|+.+..........  .....++.+.+++++-||+.+-+. ...+++.++++++..|+++...
T Consensus        28 ~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~~~~~~iPvV~~~~~~   97 (291)
T 3egc_A           28 SGVESEARHKGYSVLLANTAEDIV--REREAVGQFFERRVDGLILAPSEG-EHDYLRTELPKTFPIVAVNREL   97 (291)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCHH--HHHHHHHHHHHTTCSEEEECCCSS-CCHHHHHSSCTTSCEEEESSCC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCHH--HHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHHhhccCCCEEEEeccc
Confidence            467788999999998775433332  123445556789999999988765 5678888899999999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	417
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	6e-04

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 6e-04
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 156 PYICGVCGRKCKTNLDLKKHFKQLHERER 184
           PYIC  CG+       L  H KQ+H  ER
Sbjct: 5   PYICQSCGKGFSRPDHLNGHIKQVHTSER 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	417
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.18
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.1
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.02
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.93
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	97.88
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.88
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	97.79
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	97.67
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.54
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	97.53
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	97.52
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	97.42
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.41
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	97.34
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.13
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.11
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.11
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.09
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.04
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	96.99
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.95
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	96.76
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.65
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.59
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.48
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.38
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.24
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	96.15
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.13
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.4
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	94.15
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	94.01
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	93.05
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	91.43
d2dria_	271	D-ribose-binding protein {Escherichia coli, strain	91.18
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	90.73
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	90.22
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.18
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	89.16
d1jyea_	271	Lac-repressor (lacR) core (C-terminal domain) {Esc	88.94
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	88.0
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	87.5
d8abpa_	305	L-arabinose-binding protein {Escherichia coli [Tax	86.6
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	86.19
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	86.08
d2fvya1	305	Galactose/glucose-binding protein {Escherichia col	85.81
d1dbqa_	282	Purine repressor (PurR), C-terminal domain {Escher	84.98
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	84.48
d1y0jb1	36	U-shaped transcription factor, different fingers {	84.29
d1ltqa1	149	Polynucleotide kinase, phosphatase domain {Bacteri	84.2
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	84.05
d1tjya_	316	AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370	83.4
d1vima_	192	Hypothetical protein AF1796 {Archaeon Archaeoglobu	83.13
d1guda_	288	D-allose-binding protein {Escherichia coli [TaxId:	82.95
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	80.79

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.1e-07  Score=64.70  Aligned_cols=32  Identities=41%  Similarity=0.795  Sum_probs=30.4

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHHhhhhhHH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      .+||.|..||+.|.....|++|.+.+|..||.
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekp   34 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERP   34 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCC
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcC
Confidence            58999999999999999999999999999975

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=6e-07  Score=61.04  Aligned_cols=31  Identities=26%  Similarity=0.521  Sum_probs=28.5

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      .++||.|++||+.|.....|++|.++.|..|
T Consensus         5 gekP~~C~~C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           5 GEKPYECYICHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             CCCCEeCCCCcccccchHHHHHHcccccCCC
Confidence            4689999999999999999999999999754

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=8.1e-07  Score=60.44  Aligned_cols=30  Identities=23%  Similarity=0.641  Sum_probs=26.8

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      -++||.|++||+.|.....|++|.| +|..+
T Consensus         4 GekPy~C~~C~k~F~~~~~L~~H~r-~Ht~~   33 (35)
T d1srka_           4 GKRPFVCRICLSAFTTKANCARHLK-VHTDT   33 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHG-GGTSC
T ss_pred             CCccccCCCCCCcccChHHHHHHcc-ccCCc
Confidence            3689999999999999999999986 78765

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.93  E-value=1.7e-06  Score=56.56  Aligned_cols=29  Identities=31%  Similarity=0.783  Sum_probs=25.6

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      +||.|++||+.|....+|++|.+ +|+.|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r-~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHH-TTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccC-cccCCC
Confidence            58999999999999999999985 677664

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=2.3e-06  Score=56.01  Aligned_cols=29  Identities=24%  Similarity=0.596  Sum_probs=26.0

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      +||.|++||+.|.....|++|.+. |+-|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~-HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKT-HQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHG-GGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCc-cCCcC
Confidence            589999999999999999999985 87664

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=3e-06  Score=55.18  Aligned_cols=25  Identities=24%  Similarity=0.659  Sum_probs=22.9

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQ  178 (417)
                      ++||.|++||+.|.....|++|.|.
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRT   25 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCC
Confidence            4799999999999999999999763

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=4.6e-06  Score=55.98  Aligned_cols=30  Identities=30%  Similarity=0.562  Sum_probs=26.0

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      .++||.|.+||+.|.....|.+|. .+|..|
T Consensus         4 gekpy~C~~Cgk~F~~~~~L~~H~-r~HtgE   33 (33)
T d1x6ea1           4 GEKPYGCVECGKAFSRSSILVQHQ-RVHTGE   33 (33)
T ss_dssp             TCCCEECSSSCCEESSHHHHHHHH-HGGGCS
T ss_pred             CCCCeeCCCCCCEeCchHHhHhhc-cccCCC
Confidence            468999999999999999999995 467654

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=9.6e-06  Score=55.20  Aligned_cols=31  Identities=32%  Similarity=0.596  Sum_probs=26.7

Q ss_pred             CCCCCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          152 VPNDPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       152 ~p~~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      ..++||.|.+||+.|.....|.+|.+ +|.-|
T Consensus         8 t~ekpy~C~~CgK~F~~~s~L~~H~r-~HtGE   38 (38)
T d2cota2           8 RERRRYKCDECGKSFSHSSDLSKHRR-THTGE   38 (38)
T ss_dssp             CCSCSSBCSSSCCBCSCHHHHHHHHT-TTCCS
T ss_pred             CCCCCEecCCCCceeeCHHHHHHhCc-cCCCC
Confidence            46789999999999999999999965 66543

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=1.7e-05  Score=52.15  Aligned_cols=28  Identities=25%  Similarity=0.901  Sum_probs=24.8

Q ss_pred             CCeeccc--CCCCCCChHHHHHHHHHhhhhh
Q 014872          155 DPYICGV--CGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       155 ~PY~C~V--CGRkf~T~~kL~kHFKQLHERE  183 (417)
                      +||.|++  ||+.|.+..+|++|.| +|+-|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r-~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVR-IHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHH-HHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCcccc-ccCCC
Confidence            5899999  9999999999999987 58643

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=2.2e-05  Score=53.16  Aligned_cols=28  Identities=29%  Similarity=0.453  Sum_probs=24.8

Q ss_pred             CCCCCeecccCCCCCCChHHHHHHHHHhh
Q 014872          152 VPNDPYICGVCGRKCKTNLDLKKHFKQLH  180 (417)
Q Consensus       152 ~p~~PY~C~VCGRkf~T~~kL~kHFKQLH  180 (417)
                      +.++||.|+.||+.|.+...|++|.| +|
T Consensus         7 TgeKPy~C~~C~k~F~~~~~L~~H~r-~H   34 (37)
T d1p7aa_           7 TGIKPFQCPDCDRSFSRSDHLALHRK-RH   34 (37)
T ss_dssp             CCSSSBCCTTTCCCBSSHHHHHHHHG-GG
T ss_pred             CCccCeEeCCCCCEecCHHHHHHHHh-cC
Confidence            35689999999999999999999975 45

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=2.3e-05  Score=52.87  Aligned_cols=28  Identities=32%  Similarity=0.745  Sum_probs=25.2

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLH  180 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLH  180 (417)
                      .++||.|.+||+.|.....|++|.+.-|
T Consensus         5 gekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           5 GEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             CCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            5689999999999999999999997644

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=3.5e-05  Score=49.62  Aligned_cols=23  Identities=35%  Similarity=0.715  Sum_probs=21.8

Q ss_pred             CCeecccCCCCCCChHHHHHHHH
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFK  177 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFK  177 (417)
                      +||.|..||+.|.....|.+|.|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqr   23 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQR   23 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCcc
Confidence            59999999999999999999976

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=3.4e-05  Score=51.43  Aligned_cols=28  Identities=32%  Similarity=0.687  Sum_probs=24.0

Q ss_pred             CCCeeccc--CCCCCCChHHHHHHHHHhhhh
Q 014872          154 NDPYICGV--CGRKCKTNLDLKKHFKQLHER  182 (417)
Q Consensus       154 ~~PY~C~V--CGRkf~T~~kL~kHFKQLHER  182 (417)
                      ++||.|.+  ||++|.+.++|++|. .+|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~-r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHK-KSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHH-GGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHh-hhccC
Confidence            47999999  999999999999995 45653

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=2.9e-05  Score=51.25  Aligned_cols=29  Identities=28%  Similarity=0.786  Sum_probs=25.0

Q ss_pred             CCeeccc--CCCCCCChHHHHHHHHHhhhhhH
Q 014872          155 DPYICGV--CGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       155 ~PY~C~V--CGRkf~T~~kL~kHFKQLHERER  184 (417)
                      +||.|++  ||+.|.+..+|++|.+ +|+-|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r-~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKR-THTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHT-TTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcC-cccccC
Confidence            5899965  9999999999999997 487653

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00012  Score=48.06  Aligned_cols=26  Identities=27%  Similarity=0.580  Sum_probs=23.3

Q ss_pred             CCeeccc--CCCCCCChHHHHHHHHHhhh
Q 014872          155 DPYICGV--CGRKCKTNLDLKKHFKQLHE  181 (417)
Q Consensus       155 ~PY~C~V--CGRkf~T~~kL~kHFKQLHE  181 (417)
                      +||.|.+  ||+.|.+...|++|.+ +|.
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r-~Ht   28 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLR-SHT   28 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHH-HTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcC-cCc
Confidence            5899999  9999999999999985 565

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00011  Score=48.15  Aligned_cols=24  Identities=38%  Similarity=0.873  Sum_probs=22.0

Q ss_pred             CCCeecccCCCCCCChHHHHHHHH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFK  177 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFK  177 (417)
                      ++||.|.+|||+|-..+..++|-|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~k   24 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTK   24 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHG
T ss_pred             CCCcccchhhhhhhcchhhhhhhh
Confidence            479999999999999999999976

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.11  E-value=8.1e-05  Score=49.74  Aligned_cols=26  Identities=35%  Similarity=0.777  Sum_probs=24.8

Q ss_pred             CeecccCCCCCCChHHHHHHHHHhhh
Q 014872          156 PYICGVCGRKCKTNLDLKKHFKQLHE  181 (417)
Q Consensus       156 PY~C~VCGRkf~T~~kL~kHFKQLHE  181 (417)
                      ||.|++|||+|..++-|.+|...||.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            89999999999999999999999985

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=8.8e-05  Score=48.56  Aligned_cols=28  Identities=43%  Similarity=0.770  Sum_probs=24.0

Q ss_pred             CeecccCCCCCCChHHHHHHHHHhhhhhH
Q 014872          156 PYICGVCGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       156 PY~C~VCGRkf~T~~kL~kHFKQLHERER  184 (417)
                      .|+|+.||+.|.-..-|+||+|. |+.||
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRs-HT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRT-HTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH-TSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHH-hcCCC
Confidence            38999999999999999999985 55543

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=8.7e-05  Score=52.04  Aligned_cols=34  Identities=21%  Similarity=0.418  Sum_probs=21.1

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhhHHHHHhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNR  190 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERER~KRLnr  190 (417)
                      +||.|. ||+.|.+...|.+|.+ +|..|+.=+.+.
T Consensus         2 K~y~C~-Cgk~F~~~~~l~~H~~-~Ht~ekpy~C~~   35 (53)
T d2csha1           2 KLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGV   35 (53)
T ss_dssp             CCEECT-TSCEESSHHHHHHHHH-HHSCCCSEECTT
T ss_pred             cCCCCC-CCCeECCHHHhHHHhh-ccccccCCcCCC
Confidence            567774 7777777777777743 666665544444

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.00014  Score=47.54  Aligned_cols=26  Identities=38%  Similarity=0.965  Sum_probs=23.0

Q ss_pred             CCeeccc--CCCCCCChHHHHHHHHHhhh
Q 014872          155 DPYICGV--CGRKCKTNLDLKKHFKQLHE  181 (417)
Q Consensus       155 ~PY~C~V--CGRkf~T~~kL~kHFKQLHE  181 (417)
                      +||.|.+  ||+.|.+..+|++|.+ +|.
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r-~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIR-IHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTH-HHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcC-ccC
Confidence            5899998  9999999999999976 553

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00014  Score=47.33  Aligned_cols=24  Identities=33%  Similarity=0.816  Sum_probs=22.2

Q ss_pred             CCeeccc--CCCCCCChHHHHHHHHH
Q 014872          155 DPYICGV--CGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       155 ~PY~C~V--CGRkf~T~~kL~kHFKQ  178 (417)
                      +||.|..  ||+.|.+..+|++|.|.
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~   26 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILT   26 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhh
Confidence            5899999  99999999999999874

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.00018  Score=51.05  Aligned_cols=32  Identities=25%  Similarity=0.672  Sum_probs=26.8

Q ss_pred             CCCCCeeccc--CCCCCCChHHHHHHHHHhhhhhH
Q 014872          152 VPNDPYICGV--CGRKCKTNLDLKKHFKQLHERER  184 (417)
Q Consensus       152 ~p~~PY~C~V--CGRkf~T~~kL~kHFKQLHERER  184 (417)
                      ..++||.|.+  ||+.|.....|.+|. .+|.-||
T Consensus        14 ~gekpy~C~~~~C~k~F~~~~~L~~H~-r~Htgek   47 (47)
T d1ncsa_          14 MPDKTFECLFPGCTKTFKRRYNIRSHI-QTHLEDR   47 (47)
T ss_dssp             ETTTEEECCCTTCCCEECSSSSHHHHH-HHHTTTC
T ss_pred             cCCCCeECCcCCCCccccCchHHHhhc-ccccCCC
Confidence            3668999998  999999999999995 4676553

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00042  Score=48.38  Aligned_cols=27  Identities=44%  Similarity=0.885  Sum_probs=23.7

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLH  180 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLH  180 (417)
                      ..+||.|+.||+.|.+...|.+|. ++|
T Consensus        27 ~ekpy~C~~C~k~F~~~~~L~~H~-r~H   53 (53)
T d2csha1          27 GLRPYGCGVCGKKFKMKHHLVGHM-KIH   53 (53)
T ss_dssp             CCCSEECTTTSCEESSSHHHHHHH-TTT
T ss_pred             cccCCcCCCcCCEecCHHHHHHHH-hcC
Confidence            468999999999999999999996 444

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0005  Score=45.34  Aligned_cols=29  Identities=31%  Similarity=0.629  Sum_probs=27.3

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHERE  183 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHERE  183 (417)
                      +||.|++|-.++-...+|+-|.|+.|..|
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            58999999999999999999999999876

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00064  Score=44.82  Aligned_cols=26  Identities=35%  Similarity=0.911  Sum_probs=24.3

Q ss_pred             CCeeccc--CCCCCCChHHHHHHHHHhh
Q 014872          155 DPYICGV--CGRKCKTNLDLKKHFKQLH  180 (417)
Q Consensus       155 ~PY~C~V--CGRkf~T~~kL~kHFKQLH  180 (417)
                      +||.|.+  |++..-....|.||+|..|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            5899999  8899999999999999988

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.38  E-value=0.00052  Score=47.39  Aligned_cols=33  Identities=30%  Similarity=0.741  Sum_probs=29.5

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhhhhHHH
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHERERQK  186 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHERER~K  186 (417)
                      |+..|.|.+|++.|.+---|=.| +..|-+||.+
T Consensus         2 p~r~~~C~~C~k~F~s~qALGGH-~~~Hr~~r~~   34 (37)
T d1njqa_           2 PPRSYTCSFCKREFRSAQALGGH-MNVHRRDRAR   34 (37)
T ss_dssp             CSSSEECTTTCCEESSHHHHHHH-HHTTCCSCTT
T ss_pred             CCCccCCCCCCCccCCcccccch-HhhhcchHHH
Confidence            67899999999999999999999 5889888764

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.00087  Score=42.90  Aligned_cols=23  Identities=35%  Similarity=0.681  Sum_probs=21.0

Q ss_pred             CeecccCCCCCCChHHHHHHHHH
Q 014872          156 PYICGVCGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       156 PY~C~VCGRkf~T~~kL~kHFKQ  178 (417)
                      |+.|.|||+-|+..++|+-|.+.
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~   23 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRC   23 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGG
T ss_pred             CCccchhhhHhcchhHHHHHhhc
Confidence            78999999999999999999763

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0009  Score=45.15  Aligned_cols=29  Identities=31%  Similarity=0.673  Sum_probs=25.5

Q ss_pred             Ceeccc--CCCCCCChHHHHHHHHHhhhhhHH
Q 014872          156 PYICGV--CGRKCKTNLDLKKHFKQLHERERQ  185 (417)
Q Consensus       156 PY~C~V--CGRkf~T~~kL~kHFKQLHERER~  185 (417)
                      .|.|++  ||+.|.+...|++|.+. |.-||.
T Consensus         1 tf~C~~~~C~k~F~~~~~L~~H~r~-Htgekp   31 (36)
T d2dlka2           1 SFSCPEPACGKSFNFKKHLKEHMKL-HSDTRD   31 (36)
T ss_dssp             CEECSCTTTCCEESSHHHHHHHHHH-HHTSCC
T ss_pred             CeECCCCCCCCeeCChhHhccccCe-eCCCCC
Confidence            389998  99999999999999776 988874

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0012  Score=43.98  Aligned_cols=25  Identities=32%  Similarity=0.739  Sum_probs=22.2

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQ  178 (417)
                      ++||.|+||+.+|+..+.+.-|-+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrs   25 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRS   25 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHH
T ss_pred             CCCcccchHHHHhhccccceEeeec
Confidence            4799999999999999999888764

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.0081  Score=38.92  Aligned_cols=25  Identities=28%  Similarity=0.610  Sum_probs=21.6

Q ss_pred             CeecccCCCCCCChHHHHHHHHHhhh
Q 014872          156 PYICGVCGRKCKTNLDLKKHFKQLHE  181 (417)
Q Consensus       156 PY~C~VCGRkf~T~~kL~kHFKQLHE  181 (417)
                      .+.|-.||+-|--..+|++|| .+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~-lvht   26 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQ-LVHT   26 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHG-GGTS
T ss_pred             cchHHHHhHHHHHHHHHHHHh-hccc
Confidence            479999999999999999998 3454

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.15  E-value=0.0086  Score=45.38  Aligned_cols=33  Identities=30%  Similarity=0.552  Sum_probs=29.2

Q ss_pred             eecccCCCCCCChHHHHHHHHHhhhhhHHHHHh
Q 014872          157 YICGVCGRKCKTNLDLKKHFKQLHERERQKKLN  189 (417)
Q Consensus       157 Y~C~VCGRkf~T~~kL~kHFKQLHERER~KRLn  189 (417)
                      |-|-+|+|.|.|...|.+|+|+---+.|-|+|.
T Consensus        16 fYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~   48 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFRSKDHKKRLKQLS   48 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTTCHHHHHHHHHHT
T ss_pred             EecccccCccCCHHHHHHHHcccHHHHHHHHhc
Confidence            789999999999999999999987777777664

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.012  Score=41.58  Aligned_cols=25  Identities=20%  Similarity=0.608  Sum_probs=22.2

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQ  178 (417)
                      -+||.|.+||++|--++.+.+|--.
T Consensus         3 iKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           3 IKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCceeccchhhhhhhHHHHHHhhhh
Confidence            3689999999999999999999654

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.05  E-value=0.024  Score=36.96  Aligned_cols=23  Identities=43%  Similarity=0.769  Sum_probs=22.0

Q ss_pred             CeecccCCCCCCChHHHHHHHHH
Q 014872          156 PYICGVCGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       156 PY~C~VCGRkf~T~~kL~kHFKQ  178 (417)
                      ||.|..|.-.|+|.-+|.||.|.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            89999999999999999999985

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.43  E-value=0.057  Score=34.19  Aligned_cols=25  Identities=24%  Similarity=0.539  Sum_probs=23.7

Q ss_pred             CeecccCCCCCCChHHHHHHHHHhh
Q 014872          156 PYICGVCGRKCKTNLDLKKHFKQLH  180 (417)
Q Consensus       156 PY~C~VCGRkf~T~~kL~kHFKQLH  180 (417)
                      .|-||+|=+.|...+++.-|.|-||
T Consensus         1 vypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           1 VYPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             CcCCchhhHHhccccCceEEEEEec
Confidence            3889999999999999999999999

>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: D-ribose-binding protein
species: Escherichia coli, strain k-12 [TaxId: 562]

Probab=91.18  E-value=0.27  Score=39.91  Aligned_cols=69  Identities=14%  Similarity=0.220  Sum_probs=53.7

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCC-cchHHHHHHHHHcCCcEEEEcC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDD-NDFKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDD-sdF~~~Lr~AR~~~v~TVVVGd  297 (417)
                      .|+..++++.|+.+.+....-..+  .-.+.++.++++|++.+++..-+ ....++++.+++.++..|+++.
T Consensus        21 ~gi~~~a~~~g~~~~i~~~~~~~~--~~~~~i~~~~~~~~d~ii~~~~~~~~~~~~~~~~~~~~ipvV~~~~   90 (271)
T d2dria_          21 DGAQKEADKLGYNLVVLDSQNNPA--KELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR   90 (271)
T ss_dssp             HHHHHHHHHHTCEEEEEECTTCHH--HHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEESS
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCHH--HHHHHHHHHHhcCCcccccccccccchHHHHHHHhhcceeEEEecc
Confidence            478889999999998764322222  13556777889999999998754 5678999999999999999976

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.73  E-value=0.071  Score=33.69  Aligned_cols=25  Identities=36%  Similarity=0.838  Sum_probs=23.7

Q ss_pred             CeecccCCCCCCChHHHHHHHHHhh
Q 014872          156 PYICGVCGRKCKTNLDLKKHFKQLH  180 (417)
Q Consensus       156 PY~C~VCGRkf~T~~kL~kHFKQLH  180 (417)
                      ||.|..|...|-...+|+.|.-.||
T Consensus         2 pykcsscsqqfmqkkdlqshmiklh   26 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIKLH   26 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCcccHHHHHHHHHHHHHHHHHhcC
Confidence            8999999999999999999998877

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.22  E-value=0.089  Score=34.25  Aligned_cols=28  Identities=32%  Similarity=0.699  Sum_probs=25.5

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHER  182 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHER  182 (417)
                      .|+.|..|.---+.+.+|-+|.|+.|..
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            4899999998889999999999999963

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.18  E-value=0.12  Score=33.58  Aligned_cols=24  Identities=33%  Similarity=0.584  Sum_probs=21.4

Q ss_pred             CCeeccc--CCCCCCChHHHHHHHHH
Q 014872          155 DPYICGV--CGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       155 ~PY~C~V--CGRkf~T~~kL~kHFKQ  178 (417)
                      .||.|+-  |++.|.....|++|-|.
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekv   27 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKV   27 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhc
Confidence            6899985  99999999999999773

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.16  E-value=0.05  Score=36.02  Aligned_cols=28  Identities=29%  Similarity=0.654  Sum_probs=24.2

Q ss_pred             CCeeccc--CCCCCCChHHHHHHHHHhhhh
Q 014872          155 DPYICGV--CGRKCKTNLDLKKHFKQLHER  182 (417)
Q Consensus       155 ~PY~C~V--CGRkf~T~~kL~kHFKQLHER  182 (417)
                      +||.|++  |++.|.+..+--||...-|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            5899999  999999999999998666643

>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Lac-repressor (lacR) core (C-terminal domain)
species: Escherichia coli [TaxId: 562]

Probab=88.94  E-value=0.29  Score=41.10  Aligned_cols=70  Identities=14%  Similarity=0.065  Sum_probs=53.8

Q ss_pred             CCchHHHHhcceEEEEeCCC-chhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDK-PQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dK-PqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..+++.+|+.|-..... ..+  ...+..++.+.+++++-|+|-+...+...++..+.+.++-.|+++-.
T Consensus        20 ~~i~~~a~~~Gy~v~v~~~~~~~~--~~~~~~l~~l~~~~vdgiIl~~~~~~~~~~~~~~~~~~iPvV~~d~~   90 (271)
T d1jyea_          20 AAILSRADQLGASVVVSMVERSGV--EACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVS   90 (271)
T ss_dssp             HHHHHHHHHTTCEEEEEECCSSSH--HHHHHHHHHHHTTTCSCEEEESCCCHHHHHHHHHHTTTSCEEESSSC
T ss_pred             HHHHHHHHHcCCEEEEEECCCCCH--HHHHHHHHHHHhcCCCEEEeccccCchhHHHHHHHhcCCCeeeeecc
Confidence            56788999999999654222 222  24667777788999999998877777788888999999999988753

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.00  E-value=0.14  Score=37.10  Aligned_cols=24  Identities=29%  Similarity=0.587  Sum_probs=21.1

Q ss_pred             CCeecccCCCCCCChHHHHHHHHH
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQ  178 (417)
                      .-|.|+.||+-|.....|.+|--|
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQ   28 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQ   28 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHH
T ss_pred             ceeeccccccccCCHHHHhHhHHh
Confidence            357899999999999999998665

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.50  E-value=0.17  Score=32.54  Aligned_cols=23  Identities=30%  Similarity=0.749  Sum_probs=21.5

Q ss_pred             CCeecccCCCCCCChHHHHHHHH
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFK  177 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFK  177 (417)
                      +||.|..|..-.-....|+||.|
T Consensus         2 kp~kck~cdyaaadsssl~kh~r   24 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLR   24 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccccccchhcchhhHhhhhh
Confidence            68999999999999999999986

>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: L-arabinose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=86.60  E-value=1.2  Score=37.07  Aligned_cols=67  Identities=16%  Similarity=0.176  Sum_probs=50.6

Q ss_pred             CchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCc-chHHHHHHHHHcCCcEEEEcC
Q 014872          228 GLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDN-DFKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       228 GLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDs-dF~~~Lr~AR~~~v~TVVVGd  297 (417)
                      |...+.+..|+.+.... ...++  --...|+.++..|++.||+++=+. ....+++.|+++|+..|.++.
T Consensus        22 g~~~aa~~~G~~~i~~~-~~d~~--~q~~~i~~li~~~vDgiIi~~~~~~~~~~~~~~a~~~giPVV~~d~   89 (305)
T d8abpa_          22 FADKAGKDLGFEVIKIA-VPDGE--KTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD   89 (305)
T ss_dssp             HHHHHHHHHTEEEEEEE-CCSHH--HHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred             HHHHHHHHcCCEEEEEc-CCCHH--HHHHHHHHHHHcCCCEEEEccccccccHHHHHHHHhcCCCEEEEcC
Confidence            44556778899886553 34443  234567888899999999997544 578899999999999999964

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=86.19  E-value=0.22  Score=36.01  Aligned_cols=29  Identities=21%  Similarity=0.513  Sum_probs=26.5

Q ss_pred             CCCCeecccCCCCCCChHHHHHHHHHhhh
Q 014872          153 PNDPYICGVCGRKCKTNLDLKKHFKQLHE  181 (417)
Q Consensus       153 p~~PY~C~VCGRkf~T~~kL~kHFKQLHE  181 (417)
                      .++|-.|++||--.+..-+|.+|+..+|-
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf   49 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            45799999999999999999999999984

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=86.08  E-value=0.17  Score=31.84  Aligned_cols=21  Identities=33%  Similarity=0.790  Sum_probs=19.5

Q ss_pred             eecccCCCCCCChHHHHHHHH
Q 014872          157 YICGVCGRKCKTNLDLKKHFK  177 (417)
Q Consensus       157 Y~C~VCGRkf~T~~kL~kHFK  177 (417)
                      |.|+.|-|.|-...-|-+|.+
T Consensus         1 ykcglcersfveksalsrhqr   21 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQR   21 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG
T ss_pred             CcccchHHHHHHHHHHHHHHH
Confidence            789999999999999999975

>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Galactose/glucose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=85.81  E-value=1.1  Score=36.69  Aligned_cols=70  Identities=16%  Similarity=0.197  Sum_probs=51.8

Q ss_pred             CCchHHHHhc-ceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEe-CCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRA-GVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVS-DDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRA-GV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVS-DDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      .|+..+++.. |+.+......-+.+  ...+.++.+++.+++.|++.. +...+...+..+++.++..|++...
T Consensus        21 ~gi~~~a~~~~~~~l~~~~~~~~~~--~q~~~i~~li~~~vDgiii~~~~~~~~~~~~~~~~~~~ipvv~~~~~   92 (305)
T d2fvya1          21 KAIEQDAKAAPDVQLLMNDSQNDQS--KQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE   92 (305)
T ss_dssp             HHHHHHHHTCTTEEEEEEECTTCHH--HHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHHTTTCCEEEESSC
T ss_pred             HHHHHHHHHcCCcEEEEEcCCCCHH--HHHHHHHHHHHcCCCEEEeecccccccHHHHHHHHhcCCceeeeeec
Confidence            3566777765 78777653222222  345667888899999998874 6688999999999999999998763

>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Purine repressor (PurR), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.98  E-value=1.3  Score=35.96  Aligned_cols=70  Identities=7%  Similarity=-0.028  Sum_probs=50.4

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      -|+..++++.|+.+.+.....+..  -.+..+..++.++++-+|++..+.+-.-....+..+++..|+++..
T Consensus        20 ~gi~~~~~~~gy~~~~~~~~~d~~--~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~   89 (282)
T d1dbqa_          20 EAVEKNCFQKGYTLILGNAWNNLE--KQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWG   89 (282)
T ss_dssp             HHHHHHHHHHTCEEEEEECTTCHH--HHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHHTTTSCEEEEECS
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCHH--HHHHHHHHHHhcCCCEEeeecccccchhhhhHHhhcCCCceEEEec
Confidence            367788999999998776555444  1345556677899999888876655444555556678999999864

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.48  E-value=0.25  Score=31.92  Aligned_cols=25  Identities=20%  Similarity=0.651  Sum_probs=22.0

Q ss_pred             CCCeecccCCCCCCChHHHHHHHHH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFKQ  178 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFKQ  178 (417)
                      +.||.|+.|...-++...|.-|++.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~   25 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRS   25 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTT
T ss_pred             CCcceeeecccccCCchheEEeeec
Confidence            4799999999999999999988864

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.29  E-value=0.38  Score=32.27  Aligned_cols=24  Identities=21%  Similarity=0.441  Sum_probs=21.8

Q ss_pred             CCCeecccCCCCCCChHHHHHHHH
Q 014872          154 NDPYICGVCGRKCKTNLDLKKHFK  177 (417)
Q Consensus       154 ~~PY~C~VCGRkf~T~~kL~kHFK  177 (417)
                      |..|+|+-||-+|.+...|.-|..
T Consensus         6 parf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           6 PARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ccceeccccceeecChhHHHhhhh
Confidence            478999999999999999999864

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=84.20  E-value=1.8  Score=32.59  Aligned_cols=43  Identities=14%  Similarity=0.057  Sum_probs=29.0

Q ss_pred             HHHHHHHhhhCCcceEEEEeCCcchHHHHHHHHHcCCcEEEEcCC
Q 014872          254 LKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDS  298 (417)
Q Consensus       254 Lkrhm~~~m~rgv~cLvLVSDDsdF~~~Lr~AR~~~v~TVVVGd~  298 (417)
                      +|..|...+.....-+++|-||+.  ..+.+||+.|+.++-|.-+
T Consensus       105 ~k~~~l~~~~~~~~~i~~~igD~~--~dv~a~~~~Gi~~~~V~~G  147 (149)
T d1ltqa1         105 VKEEIFWKHIAPHFDVKLAIDDRT--QVVEMWRRIGVECWQVASG  147 (149)
T ss_dssp             HHHHHHHHHTTTTCEEEEEEECCH--HHHHHHHHTTCCEEECSCC
T ss_pred             HHHHHHHHhccCCCceEEEEcCCH--HHHHHHHHCCCcEEEeCCC
Confidence            344443333333456788888887  5688899999999888654

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.05  E-value=0.28  Score=31.42  Aligned_cols=21  Identities=29%  Similarity=0.597  Sum_probs=18.4

Q ss_pred             CeecccCCCCCCChHHHHHHH
Q 014872          156 PYICGVCGRKCKTNLDLKKHF  176 (417)
Q Consensus       156 PY~C~VCGRkf~T~~kL~kHF  176 (417)
                      |+.|+-||+..-..++|..|-
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            789999999888889998873

>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: AI-2 receptor LsrB
species: Salmonella typhi [TaxId: 90370]

Probab=83.40  E-value=1.9  Score=35.18  Aligned_cols=71  Identities=11%  Similarity=0.166  Sum_probs=52.9

Q ss_pred             CCchHHHHhcceEEEEeC-CCchhHHHHHHHHHHHhhhCCcceEEEEeCC-cchHHHHHHHHHcCCcEEEEcCCC
Q 014872          227 YGLGSELRRAGVFVKTVR-DKPQAADWALKRQMQHSMSSGVDWMFLVSDD-NDFKEMLRKARDANLGTVVVGDSN  299 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~-dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDD-sdF~~~Lr~AR~~~v~TVVVGd~~  299 (417)
                      .|+..+++..|+.|..+. ...+++  --...++.++..|++.||++.-+ ......++.|.+.++..|++....
T Consensus        23 ~g~~~~a~~~G~~v~~~~~~~~d~~--~q~~~i~~~i~~~~dgIIi~~~~~~~~~~~~~~a~~~gi~vv~~d~~~   95 (316)
T d1tjya_          23 NGAQEAGKALGIDVTYDGPTEPSVS--GQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDT   95 (316)
T ss_dssp             HHHHHHHHHHTCEEEECCCSSCCHH--HHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCC
T ss_pred             HHHHHHHHHcCCEEEEEECCCCCHH--HHHHHHHHHHhcCCCeeeecccccchhhhhhhhhhcccccceeccccc
Confidence            477888899999987652 222332  12456777889999999987654 467889999999999988886643

>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein AF1796
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.13  E-value=0.52  Score=39.01  Aligned_cols=70  Identities=20%  Similarity=0.240  Sum_probs=51.9

Q ss_pred             hHHHHhcceEEEEeCCCchhHHHHHHHHHHHhhhCCcceEEEEeCC---cchHHHHHHHHHcCCcEEEEcCC-CCccccc
Q 014872          230 GSELRRAGVFVKTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDD---NDFKEMLRKARDANLGTVVVGDS-NRGLGQH  305 (417)
Q Consensus       230 A~ELkRAGV~VrtV~dKPqAAD~ALkrhm~~~m~rgv~cLvLVSDD---sdF~~~Lr~AR~~~v~TVVVGd~-~~~L~R~  305 (417)
                      +..|.+-|..|..+++.-. +          .++.+ |+++++|=.   .+-.++++.|+++|.++|.|.+. .+.|.+.
T Consensus        59 ~~~l~~lg~~~~~~~~~~~-~----------~i~~~-Dl~i~iS~sG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~l~~~  126 (192)
T d1vima_          59 AMRLMHLGYTVYVVGETVT-P----------RITDQ-DVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKM  126 (192)
T ss_dssp             HHHHHHTTCCEEETTSTTC-C----------CCCTT-CEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHHHH
T ss_pred             hhhhccccccccccccccc-c----------ccccc-ccceeccccccchhhHHHHHHHHhhcccceeeeeccccccccc
Confidence            4567788998888765321 1          12333 778888844   56778889999999999999776 5789999


Q ss_pred             cccccc
Q 014872          306 ADLWVP  311 (417)
Q Consensus       306 ADl~fS  311 (417)
                      ||..|.
T Consensus       127 ad~~l~  132 (192)
T d1vima_         127 ADVVMV  132 (192)
T ss_dssp             CSEEEE
T ss_pred             cceEEE
Confidence            998874

>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: D-allose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=82.95  E-value=1.2  Score=36.52  Aligned_cols=70  Identities=11%  Similarity=0.157  Sum_probs=52.2

Q ss_pred             CCchHHHHhcceEEEEeCCCchhHHHH-HHHHHHHhhhCCcceEEEEe-CCcchHHHHHHHHHcCCcEEEEcC
Q 014872          227 YGLGSELRRAGVFVKTVRDKPQAADWA-LKRQMQHSMSSGVDWMFLVS-DDNDFKEMLRKARDANLGTVVVGD  297 (417)
Q Consensus       227 YGLA~ELkRAGV~VrtV~dKPqAAD~A-Lkrhm~~~m~rgv~cLvLVS-DDsdF~~~Lr~AR~~~v~TVVVGd  297 (417)
                      -|+..+++..|+.+..+....+ .|.+ -...++++++.|++.|++.+ ++......++.|..+|+-.|.+..
T Consensus        21 ~g~~~~a~~~g~~~~i~~~~~~-~d~~~q~~~i~~~i~~~~DgIi~~~~~~~~~~~~l~~~~~~gipvv~~d~   92 (288)
T d1guda_          21 KGIEDEAKTLGVSVDIFASPSE-GDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDE   92 (288)
T ss_dssp             HHHHHHHHHHTCCEEEEECSST-TCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHHTTCEEEEESS
T ss_pred             HHHHHHHHHcCCEEEEEecCCC-CCHHHHHHHHHHHHhcCCCEEEEecCCcchhhHHHHHHHhCCCeEEEeCC
Confidence            4677888999999997632222 1222 34567778999999998885 456678899999999988887765

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.79  E-value=0.32  Score=32.62  Aligned_cols=27  Identities=26%  Similarity=0.608  Sum_probs=21.9

Q ss_pred             CCeecccCCCCCCChHHHHHHHHHhhhh
Q 014872          155 DPYICGVCGRKCKTNLDLKKHFKQLHER  182 (417)
Q Consensus       155 ~PY~C~VCGRkf~T~~kL~kHFKQLHER  182 (417)
                      +...|..||+-|+.--+|++| |.-|..
T Consensus         4 k~~~ce~cgk~frdvyhlnrh-klshs~   30 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRH-KLSHSG   30 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHH-GGGSCS
T ss_pred             hhhhHHHHHHHHHHHHHHHhh-hcccCC
Confidence            467899999999999999999 344443