Citrus Sinensis ID: 014873

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
Protein Sequence
MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSSSSPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDAPDGVQVQTAPSSTSMSNL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccHHHccccccccEEEEEEcccccccccccccccccccEEEEcccccccccccccccccccEEEEccccccccEEEEEEccccccccccccccccccHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEEEEccccEEEEccccccccccEEEEEccccccccHHHHHHHHHHHHcccEEccEEEEEcccccccccccccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHccccccccccccccccccccHHHHHHHHHHccccccHHHHcccHHHHHHHHcccccEEEEEccccEEEccccccccccccccHEcHHHHHHHccccccccccccEEEEccccccccEEEEEcccccHHccHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHccccEEccccHcccccccccccEEEEEEEcccccEEEEEcccccccccEEEEEcccccccHHHHHHHHHHHHHHccEEcEEEEEcccccccccccccccEEEEEEEEEccccccccHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccEEEccccccccccc
Coil and Loop (DISEMBL)
mstnlqtqafagnpirsktpkstdpfsptsalESLKTRlldntlhcqpqkhhsslssssssspdfkvlpfrkgrpltysgpgetapvwhlgwislgdCKIFLANSGIELKEEALVYLGSRSADDVVYWAIdvsdgdslasefgskqlCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNvsrfcghcgektipkeagklkqcsnasckkriyprvdPVVIMLVIDRENDRVLLSrqsrfvprmwsciagfiepgesLEEAVRRETWEETGIEVGEVVyhtsqpwpvgpnsmpcqlmVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLaadfnvesgelapifipgpFAIAHHLISswvykdapdgvqvqtapsstsmsnl
Flexible Loop (DISEMBL)
mstnlqtqafagnpirsktpkstdpfSPTSALESLKTRLLDNTLHCQPQKhhsslssssssspdFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEktipkeagklkqcsnasckkriyprvdPVVIMLVIDRENDRVLlsrqsrfvprMWSCIAgfiepgeslEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDAPDGVQVqtapsstsmsnl
Low Complexity Region (SEG)
MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHsslsssssssPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDAPDGVQVQTAPSSTSMSNL
Disordered region (IsUnstruct)
***************************************************************************LTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDA******************
Disordered Region (DISOPRED)
******TQAF**********************ESLKTRLLDNTLHCQPQKHHSSLSSSSSSSPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVE**************E*APIFIPGPFAIAHHLISSWV**********************
Disordered Region (DISEMBL)
MSTNLQTQAFAGNPIRSK************ALESLKTRLLDNTLHC******************FKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQ**********CKGVERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDAPDGVQ*************
Disordered Region (DISPRO)
**********************TDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSSSSPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGV*****************APIFIPGPFAIAHHLISSWVYKDAPDGVQVQT**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSSSSPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDAPDGVQVQTAPSSTSMSNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	417	2.2.26 [Sep-21-2011]
Q94A82	438	Nudix hydrolase 19, chlor	yes	no	0.961	0.915	0.706	1e-178
Q29RH3	444	Peroxisomal NADH pyrophos	yes	no	0.601	0.565	0.367	7e-42
Q4R7L8	462	Peroxisomal NADH pyrophos	N/A	no	0.597	0.538	0.371	7e-42
Q9DCN1	462	Peroxisomal NADH pyrophos	yes	no	0.714	0.645	0.336	1e-41
Q9BQG2	462	Peroxisomal NADH pyrophos	yes	no	0.601	0.543	0.370	2e-41
Q5RD76	462	Peroxisomal NADH pyrophos	yes	no	0.601	0.543	0.361	9e-40
Q9Y7J0	376	Probable NADH pyrophospha	yes	no	0.589	0.654	0.332	4e-36
Q8JZU0	352	Nucleoside diphosphate-li	no	no	0.494	0.585	0.369	3e-29
Q86X67	352	Nucleoside diphosphate-li	no	no	0.501	0.593	0.337	5e-27
Q4ZTN0	278	NADH pyrophosphatase OS=P	yes	no	0.395	0.593	0.388	8e-26

>sp|Q94A82|NUD19_ARATH Nudix hydrolase 19, chloroplastic OS=Arabidopsis thaliana GN=NUDT19 PE=1 SV=1

 Score =  626 bits (1614), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 296/419 (70%), Positives = 353/419 (84%), Gaps = 18/419 (4%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MS NL+T AFAGNP++SKTPKSTDPFSPTSA ESLKT +               + + S+
Sbjct: 36  MSMNLKTHAFAGNPLKSKTPKSTDPFSPTSAFESLKTLI-------------PVIPNHST 82

Query: 61  SSPDFKVLPFRKGRPLTYSGPGE--TAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
            SPDFKVLPF KGRPL +S  G+  T P+WHLGW+SL DCK+ LA+ G++L E++LVYLG
Sbjct: 83  PSPDFKVLPFSKGRPLVFSSGGDANTTPIWHLGWVSLADCKVLLASCGVDLNEDSLVYLG 142

Query: 119 SRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARA 178
            +  +D+VYWA+D+++ D   SE G ++LCFVELRT+MVA DWADQRAM +LAIAG+ARA
Sbjct: 143 PKLEEDLVYWAVDLAE-DGFVSELGGRKLCFVELRTLMVAADWADQRAMDELAIAGNARA 201

Query: 179 LLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLL 238
           LLEWHNVS+FCG CG KT PKEAG+ KQCS+ +C+KR+YPRVDPVVIMLVIDRENDR LL
Sbjct: 202 LLEWHNVSQFCGSCGSKTFPKEAGRRKQCSDETCRKRVYPRVDPVVIMLVIDRENDRALL 261

Query: 239 SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298
           SRQSR+VPRMWSC+AGFIEPGESLEEAVRRETWEETGIEVG+VVYH+SQPWPVGP+SMPC
Sbjct: 262 SRQSRYVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEVGDVVYHSSQPWPVGPSSMPC 321

Query: 299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGV 358
           QLM+GF+A+AK+ +INVDKEELEDA+WHSRE+VKKAL  AEY KAQRTAAAKVEQ+CKGV
Sbjct: 322 QLMLGFFAFAKTLDINVDKEELEDAQWHSREEVKKALAVAEYRKAQRTAAAKVEQICKGV 381

Query: 359 ERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDAPDGVQVQTAPSSTSMSNL 417
           ER QSL+ DFN+ESGELAP+FIPGPFAIAHHLIS+WV + APD V  +   +  S+S+L
Sbjct: 382 ERSQSLSTDFNLESGELAPMFIPGPFAIAHHLISAWVNQ-APDDVHSKQQ-AGVSLSSL 438

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Has a high affinity for NADPH compared with that for NADH.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 2EC: 2

>sp|Q29RH3|NUD12_BOVIN Peroxisomal NADH pyrophosphatase NUDT12 OS=Bos taurus GN=NUDT12 PE=2 SV=1

 Score =  171 bits (434), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 114/310 (36%), Positives = 154/310 (49%), Gaps = 59/310 (19%)

Query: 99  KIFLANSGIEL--KEEALVYLGSRSADD----VVYWAIDVSDGDSLASE-FGSKQLCFVE 151
           KI L   G+EL  K+E   Y G  S ++    V ++A+ +   D++A+E F  +      
Sbjct: 175 KITLIFLGVELEMKKEFFNYAGEISKEEEDGLVAWFALGI---DTVAAEEFKQRHENCYF 231

Query: 152 LRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNAS 211
           L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C    
Sbjct: 232 LHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGNATKIEEGGYKRVCLKED 288

Query: 212 C------KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEA 265
           C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+A
Sbjct: 289 CPSLHGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIEDA 348

Query: 266 VRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARW 325
           VRRE  EE+G++VG V Y + QPWP     MP  LM+G  A A S EI VDK E+EDARW
Sbjct: 349 VRREVEEESGVKVGHVQYVSCQPWP-----MPSSLMIGCLAVAVSTEIKVDKNEIEDARW 403

Query: 326 HSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFA 385
            +RE V   LT                                    G+    F+P   A
Sbjct: 404 FTREQVVDVLT-----------------------------------KGKQQAFFVPPSRA 428

Query: 386 IAHHLISSWV 395
           IAH LI  W+
Sbjct: 429 IAHQLIKHWI 438

Hydrolyzes NAD(P)H to NMNH and AMP (2',5'-ADP), and diadenosine diphosphate to AMP. Has also activity towards NAD(P)(+), ADP-ribose and diadenosine triphosphate. May act to regulate the concentration of peroxisomal nicotinamide nucleotide cofactors required for oxidative metabolism in this organelle.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q4R7L8|NUD12_MACFA Peroxisomal NADH pyrophosphatase NUDT12 OS=Macaca fascicularis GN=NUDT12 PE=2 SV=1

 Score =  171 bits (434), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 153/307 (49%), Gaps = 58/307 (18%)

Query: 100 IFLANSGIELKEEALVYLGS--RSADD--VVYWAIDVSDGDSLASE-FGSKQLCFVELRT 154
           IFL    +E+K++ L Y G   R  +D  V ++A+ +   D +A+E F  +      L  
Sbjct: 197 IFLGVE-LEMKDKLLNYAGEVPREEEDGLVAWFALGI---DPIAAEEFKQRHENCYFLHP 252

Query: 155 VMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASC-- 212
            M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C    C  
Sbjct: 253 PMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGNGTKIEEGGYKRVCLKEDCPS 309

Query: 213 ----KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRR 268
                   YPRVDPVVIM VI  +  R LL RQ RF P M++C+AGFIEPGE++E+AVRR
Sbjct: 310 LNGVHNTSYPRVDPVVIMQVIHPDGTRCLLGRQKRFPPGMFTCLAGFIEPGETIEDAVRR 369

Query: 269 ETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSR 328
           E  EE+G++VG V Y + QPWP     MP  LM+G  A A S EI VDK E+EDARW +R
Sbjct: 370 EVEEESGVKVGHVQYVSCQPWP-----MPSSLMIGCLAVAVSTEIKVDKNEIEDARWFTR 424

Query: 329 EDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAIAH 388
           E V   LT                                    G+    F+P   AIAH
Sbjct: 425 EQVLDVLT-----------------------------------KGKQQAFFVPPSRAIAH 449

Query: 389 HLISSWV 395
            LI  W+
Sbjct: 450 QLIKHWI 456

Hydrolyzes NAD(P)H to NMNH and AMP (2',5'-ADP), and diadenosine diphosphate to AMP. Has also activity towards NAD(P)(+), ADP-ribose and diadenosine triphosphate. May act to regulate the concentration of peroxisomal nicotinamide nucleotide cofactors required for oxidative metabolism in this organelle.

Macaca fascicularis (taxid: 9541)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9DCN1|NUD12_MOUSE Peroxisomal NADH pyrophosphatase NUDT12 OS=Mus musculus GN=Nudt12 PE=2 SV=1

 Score =  171 bits (433), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 171/374 (45%), Gaps = 76/374 (20%)

Query: 49  QKHHSSLSSSSSSSPDFKVLPFRKGRPL-TYSGPGETA--PVWHLGWISLGDCKIFLANS 105
           ++++S    +  S P    L F    PL T  G  E++  P   L  ++  D K +LA  
Sbjct: 132 KRNNSDWLQAKESHPTTVYLLFSDLNPLVTLGGNKESSQQPEVRLCQLNYPDVKGYLAQP 191

Query: 106 GIELKEEALVYLG-----------------SRSADDVVYW-AIDVSDGDSLASEFGSKQL 147
               ++  LV+LG                     D +V W A+ +  G   A EF  +  
Sbjct: 192 ----EKITLVFLGVELEMRKGSPAQAGGVPEEEEDGLVAWFALGIEPG--AAEEFKQRHE 245

Query: 148 CFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQC 207
               L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C
Sbjct: 246 NCYFLHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGSATKIEEGGYKRVC 302

Query: 208 SNASC------KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGES 261
              +C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE+
Sbjct: 303 VRETCPSLQGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGET 362

Query: 262 LEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
           +E+AVRRE  EE+G++VG V Y + QPWP     MP  LM+G  A A S EI VDK E+E
Sbjct: 363 IEDAVRREVEEESGVKVGHVQYVSCQPWP-----MPSSLMIGCLAVAVSTEIKVDKNEIE 417

Query: 322 DARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIP 381
           DARW +RE V   LT                                    G+    F+P
Sbjct: 418 DARWFTREQVVDVLT-----------------------------------KGKQQAFFVP 442

Query: 382 GPFAIAHHLISSWV 395
              AIAH LI  WV
Sbjct: 443 PSRAIAHQLIKHWV 456

Hydrolyzes NAD(P)H to NMNH and AMP (2',5'-ADP), and diadenosine diphosphate to AMP. Has also activity towards NAD(P)(+), ADP-ribose and diadenosine triphosphate. May act to regulate the concentration of peroxisomal nicotinamide nucleotide cofactors required for oxidative metabolism in this organelle.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9BQG2|NUD12_HUMAN Peroxisomal NADH pyrophosphatase NUDT12 OS=Homo sapiens GN=NUDT12 PE=1 SV=1

 Score =  170 bits (431), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/310 (37%), Positives = 153/310 (49%), Gaps = 59/310 (19%)

Query: 99  KIFLANSGIEL--KEEALVYLGS--RSADD--VVYWAIDVSDGDSLASE-FGSKQLCFVE 151
           KI L   G+EL  K++ L Y G   R  +D  V ++A+ +   D +A+E F  +      
Sbjct: 193 KITLIFLGVELEIKDKLLNYAGEVPREEEDGLVAWFALGI---DPIAAEEFKQRHENCYF 249

Query: 152 LRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNAS 211
           L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C    
Sbjct: 250 LHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGNATKIEEGGYKRLCLKED 306

Query: 212 C------KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEA 265
           C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+A
Sbjct: 307 CPSLNGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIEDA 366

Query: 266 VRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARW 325
           VRRE  EE+G++VG V Y   QPWP     MP  LM+G  A A S EI VDK E+EDARW
Sbjct: 367 VRREVEEESGVKVGHVQYVACQPWP-----MPSSLMIGCLALAVSTEIKVDKNEIEDARW 421

Query: 326 HSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFA 385
            +RE V   LT                                    G+    F+P   A
Sbjct: 422 FTREQVLDVLT-----------------------------------KGKQQAFFVPPSRA 446

Query: 386 IAHHLISSWV 395
           IAH LI  W+
Sbjct: 447 IAHQLIKHWI 456

Hydrolyzes NAD(P)H to NMNH and AMP (2',5'-ADP), and diadenosine diphosphate to AMP. Has also activity towards NAD(P)(+), ADP-ribose and diadenosine triphosphate. May act to regulate the concentration of peroxisomal nicotinamide nucleotide cofactors required for oxidative metabolism in this organelle.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q5RD76|NUD12_PONAB Peroxisomal NADH pyrophosphatase NUDT12 OS=Pongo abelii GN=NUDT12 PE=2 SV=1

 Score =  164 bits (416), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 112/310 (36%), Positives = 151/310 (48%), Gaps = 59/310 (19%)

Query: 99  KIFLANSGIEL--KEEALVYLGS--RSADD--VVYWAIDVSDGDSLASE-FGSKQLCFVE 151
           KI L   G+EL  K++   Y G   R  +D  V ++A+ +   D +A+E F  +      
Sbjct: 193 KITLIFLGVELEIKDKLFNYAGEVPREEEDGLVAWFALGI---DPIAAEEFKQRHENCYF 249

Query: 152 LRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNAS 211
           L   M A     ++   +  +   AR++L W++  +FC  CG  T  +E G  + C    
Sbjct: 250 LHPPMPALLQLKEK---EAGVVAQARSVLAWYSRYKFCPTCGNATKIEEGGYKRVCLKED 306

Query: 212 C------KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEA 265
           C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+A
Sbjct: 307 CPSLNGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIEDA 366

Query: 266 VRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARW 325
           VRRE  EE+G++VG V Y   QPWP     MP  LM+G  A A S EI VDK E+EDA W
Sbjct: 367 VRREVEEESGVKVGHVQYVACQPWP-----MPSSLMIGCLALAVSTEIKVDKNEIEDAHW 421

Query: 326 HSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFA 385
            +RE V   LT                                    G+    F+P   A
Sbjct: 422 FTREQVLDVLT-----------------------------------KGKQQAFFVPPSRA 446

Query: 386 IAHHLISSWV 395
           IAH LI  W+
Sbjct: 447 IAHQLIKHWI 456

Hydrolyzes NAD(P)H to NMNH and AMP (2',5'-ADP), and diadenosine diphosphate to AMP. Has also activity towards NAD(P)(+), ADP-ribose and diadenosine triphosphate. May act to regulate the concentration of peroxisomal nicotinamide nucleotide cofactors required for oxidative metabolism in this organelle.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9Y7J0|NPY1_SCHPO Probable NADH pyrophosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1778.03c PE=3 SV=1

 Score =  152 bits (385), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 152/307 (49%), Gaps = 61/307 (19%)

Query: 113 ALVYLGSRSADDVV-------YWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQR 165
            LVY+G+   +           +AID++  D L          FV LR++        Q 
Sbjct: 102 VLVYMGNEERNGPTDNWSQHNVFAIDITGIDELQQSIRDNGGTFVNLRSIFTEQY---QL 158

Query: 166 AMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCS--------NASCKKRI- 216
           + +D      AR++L+W +  RFC  CG++ IP   G    CS        N   KK I 
Sbjct: 159 SASDSGACAFARSILDWISRYRFCPGCGKRNIPTMGGTKLVCSDVLLNDDSNCPSKKGIN 218

Query: 217 ---YPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEE 273
              YPR DP VIM+++  +   +LL R  R    +++C+AGF+EPGESLEEAV RET+EE
Sbjct: 219 NYQYPRTDPCVIMVILSHDMQHILLGRALRHPKGLYACLAGFLEPGESLEEAVVRETYEE 278

Query: 274 TGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYA-KSFEINVDKE-ELEDARWHSREDV 331
           +G++V +V+Y+ SQPWP      P  LM+  +  A K+ +I  DK+ ELED R+ SRE+V
Sbjct: 279 SGVDVEKVLYYASQPWP-----FPQSLMLACFGIARKNAKIQRDKDLELEDVRFFSREEV 333

Query: 332 KKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAIAHHLI 391
            ++L                               +++ + G  API  P   +IA +LI
Sbjct: 334 LRSL-------------------------------EWDAKDGP-APILFPPKLSIARNLI 361

Query: 392 SSWVYKD 398
            ++ Y D
Sbjct: 362 QAFAYDD 368

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q8JZU0|NUD13_MOUSE Nucleoside diphosphate-linked moiety X motif 13 OS=Mus musculus GN=Nudt13 PE=2 SV=2

 Score =  130 bits (326), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/249 (36%), Positives = 123/249 (49%), Gaps = 43/249 (17%)

Query: 149 FVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCS 208
           F++LR  +   +  D   +        A+ALL WH+  +FC   G+ T    AG  + C 
Sbjct: 135 FIKLRQALFQLNSVDSSLLFT------AQALLRWHDGHQFCSKSGQPTQKNVAGSKRVC- 187

Query: 209 NASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRR 268
             S K   YP++ PVVI LV D    R LL+RQS F   ++S +AGF + GES+EE V R
Sbjct: 188 -PSSKIIYYPQMAPVVITLVSD--GARCLLARQSSFPKGLYSALAGFCDIGESVEETVHR 244

Query: 269 ETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAK--SFEINVDKEELEDARWH 326
           E  EE G+EV  + Y  SQ WP  PNS    LM+  +A  K    EI V+ +ELE A W 
Sbjct: 245 EVAEEVGLEVENIQYSASQHWPF-PNS---SLMIACHATVKPGHTEIQVNLKELEAAAWF 300

Query: 327 SREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAI 386
           S ++V  AL                        R  SLA    ++  E +P+ +P   AI
Sbjct: 301 SLDEVTTAL-----------------------RRKGSLA----LQPSEASPLLLPPKLAI 333

Query: 387 AHHLISSWV 395
           AHHLI  WV
Sbjct: 334 AHHLIKKWV 342

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q86X67|NUD13_HUMAN Nucleoside diphosphate-linked moiety X motif 13 OS=Homo sapiens GN=NUDT13 PE=2 SV=3

 Score =  122 bits (306), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/252 (33%), Positives = 118/252 (46%), Gaps = 43/252 (17%)

Query: 149 FVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCS 208
           F+ELR  +       Q    D ++   A+ALL WH+  +FC   G+ T    AG  + C 
Sbjct: 135 FIELRKALF------QLNARDASLLSTAQALLRWHDAHQFCSRSGQPTKKNVAGSKRVCP 188

Query: 209 NASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRR 268
           + +     YP++ PV I LV D    R LL+RQS F   M+S +AGF + GES+EE +RR
Sbjct: 189 SNNII--YYPQMAPVAITLVSD--GTRCLLARQSSFPKGMYSALAGFCDIGESVEETIRR 244

Query: 269 ETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAK--SFEINVDKEELEDARWH 326
           E  EE G+EV  + Y+ SQ WP    S    LM+  +A  K    EI V+  ELE A W 
Sbjct: 245 EVAEEVGLEVESLQYYASQHWPFPSGS----LMIACHATVKPGQTEIQVNLRELETAAWF 300

Query: 327 SREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAI 386
           S ++V  AL                        +G      +  +     P ++P   AI
Sbjct: 301 SHDEVATALK----------------------RKG-----PYTQQQNGTFPFWLPPKLAI 333

Query: 387 AHHLISSWVYKD 398
           +H LI  WV K 
Sbjct: 334 SHQLIKEWVEKQ 345

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q4ZTN0|NUDC_PSEU2 NADH pyrophosphatase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=nudC PE=3 SV=1

 Score =  118 bits (296), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 99/180 (55%), Gaps = 15/180 (8%)

Query: 152 LRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNAS 211
           LR  M+  D+A         + G+A  +  W    RFCG CG  T+     +   C + +
Sbjct: 83  LRQFMLEGDFAV------FQMLGYAAQVSTWAREHRFCGACGRATVQIRGERAMFCEHDN 136

Query: 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETW 271
              R+YPR+ P +I+LV     D +LL+R  RFV  M+S +AGF+EPGES E+ V RE  
Sbjct: 137 L--RLYPRISPSMIVLVT--RGDEILLARSPRFVTGMYSALAGFVEPGESAEDCVHREVM 192

Query: 272 EETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDV 331
           EE  + +  + Y  SQ WP  P+SM    M+GF+A  +S EI    EE+EDARW   +D+
Sbjct: 193 EEVQVRIKNLRYRGSQCWPF-PHSM----MLGFHAEYESGEIVPQAEEIEDARWFHVDDL 247

Pseudomonas syringae pv. syringae (strain B728a) (taxid: 205918)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
225445438	441	PREDICTED: nudix hydrolase 19, chloropla	0.966	0.913	0.749	0.0
255566955	400	mutt/nudix hydrolase, putative [Ricinus	0.916	0.955	0.763	1e-179
15241252	438	nudix hydrolase 19 [Arabidopsis thaliana	0.961	0.915	0.706	1e-177
297808073	438	hypothetical protein ARALYDRAFT_488907 [	0.961	0.915	0.708	1e-176
224122522	414	predicted protein [Populus trichocarpa]	0.911	0.917	0.744	1e-175
449443109	441	PREDICTED: nudix hydrolase 19, chloropla	0.923	0.873	0.730	1e-173
224088057	395	predicted protein [Populus trichocarpa]	0.913	0.964	0.714	1e-170
356514398	426	PREDICTED: nudix hydrolase 19, chloropla	0.949	0.929	0.704	1e-167
255636719	526	unknown [Glycine max]	0.959	0.760	0.628	1e-152
356513933	524	PREDICTED: LOW QUALITY PROTEIN: nudix hy	0.959	0.763	0.624	1e-151

>gi|225445438|ref|XP_002285069.1| PREDICTED: nudix hydrolase 19, chloroplastic-like [Vitis vinifera]

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/419 (74%), Positives = 349/419 (83%), Gaps = 16/419 (3%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MSTNL+T AFAGNP+RS TPK    FSP SA E+LK+RLL+N L                
Sbjct: 37  MSTNLKTHAFAGNPLRSTTPKPESLFSPISAFETLKSRLLENAL--------------LP 82

Query: 61  SSPDFKVLPFRKGRPLTYSG--PGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
           SSP FKVLPFRKGRPL  S    G++ P+WHLGW +LGD K FLANS  +  E + VYLG
Sbjct: 83  SSPIFKVLPFRKGRPLAISTRPTGDSPPIWHLGWFNLGDFKGFLANSEFQPTENSFVYLG 142

Query: 119 SRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARA 178
           SRS DDVVYW IDVS+  SL  +FG+K   FVELRT+MVATDW D+RAM+DLAIAGHARA
Sbjct: 143 SRSEDDVVYWGIDVSEDSSLVPQFGAKHFGFVELRTLMVATDWTDERAMSDLAIAGHARA 202

Query: 179 LLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLL 238
           LLEWHN+S FCGHCGEKT+P EAG+ KQCSNA CKKRIYPRVDPVVIMLVIDRENDR LL
Sbjct: 203 LLEWHNISHFCGHCGEKTVPMEAGRRKQCSNALCKKRIYPRVDPVVIMLVIDRENDRALL 262

Query: 239 SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298
           SRQSRFVPRMWSC+AGFIEPGESLEEAVRRETWEETG+EVGEV+YH+SQPWPVGPNSMPC
Sbjct: 263 SRQSRFVPRMWSCLAGFIEPGESLEEAVRRETWEETGVEVGEVIYHSSQPWPVGPNSMPC 322

Query: 299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGV 358
           QLM+GF+AYAKS EINVDKEELEDA+WHSREDVKKALTFAEY KAQRTAAAKVEQMCKGV
Sbjct: 323 QLMMGFFAYAKSVEINVDKEELEDAQWHSREDVKKALTFAEYKKAQRTAAAKVEQMCKGV 382

Query: 359 ERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDAPDGVQVQTAPSSTSMSNL 417
           E+GQ+L+ADFNVESGELA +FIPGPFAIAHHLISSWV +   +GV+ Q    S S+SNL
Sbjct: 383 EKGQNLSADFNVESGELATMFIPGPFAIAHHLISSWVNQVPLNGVEAQLKQPSGSLSNL 441

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566955|ref|XP_002524460.1| mutt/nudix hydrolase, putative [Ricinus communis] gi|223536248|gb|EEF37900.1| mutt/nudix hydrolase, putative [Ricinus communis]

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 304/398 (76%), Positives = 335/398 (84%), Gaps = 16/398 (4%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MS NL+T AFAGNP+ SKT K TDP SP  ALE+LK++ LD   H               
Sbjct: 1   MSINLRTHAFAGNPLLSKTLKPTDPLSPNLALETLKSQFLDGNSH-------------QL 47

Query: 61  SSPDFKVLPFRKGRPLTYSGPGET---APVWHLGWISLGDCKIFLANSGIELKEEALVYL 117
           SS +FKVLPFRKGRPL  S  G+     P WHLGWISL DCK  L NSG+EL  E+LVYL
Sbjct: 48  SSVNFKVLPFRKGRPLASSSIGDNDDLVPNWHLGWISLADCKTLLDNSGVELSGESLVYL 107

Query: 118 GSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHAR 177
           GS+S DDVVYWA+DVS   SL +EFGSKQ CFVELRT+MVATDWA++RAM+DLAIAGHAR
Sbjct: 108 GSKSEDDVVYWAVDVSGEGSLVTEFGSKQFCFVELRTLMVATDWANERAMSDLAIAGHAR 167

Query: 178 ALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVL 237
           ALLEWH +S FCG CGEKT+PKEAG+ KQCSN  CKKRIYPRVDPVVIMLVIDREND VL
Sbjct: 168 ALLEWHKISNFCGQCGEKTVPKEAGRRKQCSNELCKKRIYPRVDPVVIMLVIDRENDCVL 227

Query: 238 LSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP 297
           LSRQSR+VPRMWSC+AGFIEPGESLEEAVRRETWEETGIEVGEVVYH+SQPWPVGP+SMP
Sbjct: 228 LSRQSRYVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEVGEVVYHSSQPWPVGPSSMP 287

Query: 298 CQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKG 357
           CQLMVGF+AYAKS EINVDK ELEDA+WHSREDV+KAL FAEY KAQRTAAAKV+QMCKG
Sbjct: 288 CQLMVGFFAYAKSLEINVDKAELEDAKWHSREDVQKALAFAEYDKAQRTAAAKVDQMCKG 347

Query: 358 VERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWV 395
           VE+GQ+ +ADFNVESGELAP+F PGPFAIAHHLISSWV
Sbjct: 348 VEKGQNFSADFNVESGELAPMFFPGPFAIAHHLISSWV 385

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241252|ref|NP_197507.1| nudix hydrolase 19 [Arabidopsis thaliana] gi|68565923|sp|Q94A82.1|NUD19_ARATH RecName: Full=Nudix hydrolase 19, chloroplastic; Short=AtNUDT19; AltName: Full=NADH pyrophosphatase NUDT19; Flags: Precursor gi|15146278|gb|AAK83622.1| AT5g20070/F28I16_220 [Arabidopsis thaliana] gi|19699164|gb|AAL90948.1| AT5g20070/F28I16_220 [Arabidopsis thaliana] gi|110742131|dbj|BAE98994.1| hypothetical protein [Arabidopsis thaliana] gi|332005407|gb|AED92790.1| nudix hydrolase 19 [Arabidopsis thaliana]

 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 296/419 (70%), Positives = 353/419 (84%), Gaps = 18/419 (4%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MS NL+T AFAGNP++SKTPKSTDPFSPTSA ESLKT +               + + S+
Sbjct: 36  MSMNLKTHAFAGNPLKSKTPKSTDPFSPTSAFESLKTLI-------------PVIPNHST 82

Query: 61  SSPDFKVLPFRKGRPLTYSGPGE--TAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
            SPDFKVLPF KGRPL +S  G+  T P+WHLGW+SL DCK+ LA+ G++L E++LVYLG
Sbjct: 83  PSPDFKVLPFSKGRPLVFSSGGDANTTPIWHLGWVSLADCKVLLASCGVDLNEDSLVYLG 142

Query: 119 SRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARA 178
            +  +D+VYWA+D+++ D   SE G ++LCFVELRT+MVA DWADQRAM +LAIAG+ARA
Sbjct: 143 PKLEEDLVYWAVDLAE-DGFVSELGGRKLCFVELRTLMVAADWADQRAMDELAIAGNARA 201

Query: 179 LLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLL 238
           LLEWHNVS+FCG CG KT PKEAG+ KQCS+ +C+KR+YPRVDPVVIMLVIDRENDR LL
Sbjct: 202 LLEWHNVSQFCGSCGSKTFPKEAGRRKQCSDETCRKRVYPRVDPVVIMLVIDRENDRALL 261

Query: 239 SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298
           SRQSR+VPRMWSC+AGFIEPGESLEEAVRRETWEETGIEVG+VVYH+SQPWPVGP+SMPC
Sbjct: 262 SRQSRYVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEVGDVVYHSSQPWPVGPSSMPC 321

Query: 299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGV 358
           QLM+GF+A+AK+ +INVDKEELEDA+WHSRE+VKKAL  AEY KAQRTAAAKVEQ+CKGV
Sbjct: 322 QLMLGFFAFAKTLDINVDKEELEDAQWHSREEVKKALAVAEYRKAQRTAAAKVEQICKGV 381

Query: 359 ERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDAPDGVQVQTAPSSTSMSNL 417
           ER QSL+ DFN+ESGELAP+FIPGPFAIAHHLIS+WV + APD V  +   +  S+S+L
Sbjct: 382 ERSQSLSTDFNLESGELAPMFIPGPFAIAHHLISAWVNQ-APDDVHSKQQ-AGVSLSSL 438

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808073|ref|XP_002871920.1| hypothetical protein ARALYDRAFT_488907 [Arabidopsis lyrata subsp. lyrata] gi|297317757|gb|EFH48179.1| hypothetical protein ARALYDRAFT_488907 [Arabidopsis lyrata subsp. lyrata]

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 297/419 (70%), Positives = 348/419 (83%), Gaps = 18/419 (4%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MS NL+T AFAGNP++SKTPKSTDPFSPTSA ESLKT +     H  P            
Sbjct: 36  MSMNLKTHAFAGNPLKSKTPKSTDPFSPTSAFESLKTLIPVIPNHSTP------------ 83

Query: 61  SSPDFKVLPFRKGRPLTYSGPGE--TAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
            SPDFKVLPF KGRPL +S  G+  T P+WHLGW+SL DCK+ LA+ G++L EE+LVYLG
Sbjct: 84  -SPDFKVLPFSKGRPLVFSSGGDANTTPIWHLGWVSLADCKVLLASCGVDLNEESLVYLG 142

Query: 119 SRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARA 178
            +  +D+VYWA+D+++ D   SE G ++LCFVELRT+MVA DWADQRAM +LAIAG+ARA
Sbjct: 143 PKEEEDLVYWAVDLAE-DGFVSELGGRKLCFVELRTLMVAADWADQRAMDELAIAGNARA 201

Query: 179 LLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLL 238
           LLEWH  S+FCG CG KT+PKEAG+ KQCSN +C+KR+YPRVDPVVIMLVIDRENDR LL
Sbjct: 202 LLEWHIASQFCGSCGGKTVPKEAGRRKQCSNETCRKRVYPRVDPVVIMLVIDRENDRALL 261

Query: 239 SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298
           SRQSR+VPRMWSC+AGFIEPGESLEEAVRRETWEETGIEVGEVVYH+SQPWPVGP+SMPC
Sbjct: 262 SRQSRYVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEVGEVVYHSSQPWPVGPSSMPC 321

Query: 299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGV 358
           QLM+GF+A+AK+ +INVDKEELEDA+WHSRE+VKKAL  AEY KAQRTAAAKVEQ+CKGV
Sbjct: 322 QLMLGFFAFAKTLDINVDKEELEDAQWHSREEVKKALAVAEYRKAQRTAAAKVEQICKGV 381

Query: 359 ERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDAPDGVQVQTAPSSTSMSNL 417
           ER QSL+ DFN+ESGELAP+FIPGPFAIAHHLIS+WV   AP  V  +   +  S+S+L
Sbjct: 382 ERSQSLSTDFNLESGELAPMFIPGPFAIAHHLISAWV-DQAPGDVHAKQQ-AGVSLSSL 438

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122522|ref|XP_002330502.1| predicted protein [Populus trichocarpa] gi|222872436|gb|EEF09567.1| predicted protein [Populus trichocarpa]

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 295/396 (74%), Positives = 336/396 (84%), Gaps = 16/396 (4%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MSTNLQ+ AFAGNP+RSKTPKSTDP SP  A E+LKT+LL NT                 
Sbjct: 1   MSTNLQSHAFAGNPLRSKTPKSTDPLSPPLAFETLKTQLLGNTHQL-------------- 46

Query: 61  SSPDFKVLPFRKGRPL--TYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
           SS +FKVLPFRKGRPL  + S  G+  P WHLGWISL DCK   + SG EL  + +VYLG
Sbjct: 47  SSLNFKVLPFRKGRPLASSSSTDGDLGPKWHLGWISLDDCKGLFSGSGDELSGDNMVYLG 106

Query: 119 SRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARA 178
           SRS +DVVYWAI+VS  +SL ++  SKQ CFVELRT+MVATDWAD+RAM+DLA+AGHA+A
Sbjct: 107 SRSEEDVVYWAINVSGENSLVTDSVSKQFCFVELRTLMVATDWADERAMSDLAVAGHAKA 166

Query: 179 LLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLL 238
           LLEWHN+SRFCG+CGEKTI  E+G+ KQCSN  C+++IYPRVDPVVIMLVIDRENDRVLL
Sbjct: 167 LLEWHNISRFCGYCGEKTITMESGRRKQCSNELCRRKIYPRVDPVVIMLVIDRENDRVLL 226

Query: 239 SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298
            RQSRFVPRMWSC+AGFIEPGESLEEAVRRETWEET IEVGEV+YH+SQPWPVGP+SMPC
Sbjct: 227 GRQSRFVPRMWSCLAGFIEPGESLEEAVRRETWEETAIEVGEVMYHSSQPWPVGPSSMPC 286

Query: 299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGV 358
           QLMVGF+AYAKSFEINVDKEELEDA+WHSREDV+KAL  AEY KAQRTAAAKVEQMCKG+
Sbjct: 287 QLMVGFFAYAKSFEINVDKEELEDAQWHSREDVRKALLCAEYKKAQRTAAAKVEQMCKGI 346

Query: 359 ERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSW 394
           ERGQS ++DFN+ESGELAP+F PGP+AIAHHLI+SW
Sbjct: 347 ERGQSFSSDFNLESGELAPMFFPGPYAIAHHLITSW 382

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443109|ref|XP_004139323.1| PREDICTED: nudix hydrolase 19, chloroplastic-like [Cucumis sativus] gi|449520651|ref|XP_004167347.1| PREDICTED: nudix hydrolase 19, chloroplastic-like [Cucumis sativus]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 293/401 (73%), Positives = 334/401 (83%), Gaps = 16/401 (3%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MS +L + AFAGNPI+ KTPK  +PFS +SALESL ++LL+NT                S
Sbjct: 40  MSISLNSHAFAGNPIKLKTPKPENPFSASSALESLNSQLLNNT--------------HFS 85

Query: 61  SSPDFKVLPFRKGRPL-TYSG-PGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
           SS +FKVLPF+KG+PL T+S  P +T+  WHLGWI L D K   ANS +EL  +  VYLG
Sbjct: 86  SSINFKVLPFKKGKPLATFSARPNDTSSTWHLGWIDLTDFKALFANSTLELTGDLFVYLG 145

Query: 119 SRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARA 178
               ++ VYW IDVS  + L SEF SK LCFVE+RT+MVA+DWAD RAM +LAIAGHARA
Sbjct: 146 YLDEENSVYWGIDVSSEEVLVSEFASKSLCFVEVRTLMVASDWADARAMGELAIAGHARA 205

Query: 179 LLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLL 238
           LLEWHNVS+FCGHCG KT+P EAGK KQCSN SCKK++YPRVDPVVIMLVIDRENDR LL
Sbjct: 206 LLEWHNVSKFCGHCGGKTVPVEAGKRKQCSNPSCKKKVYPRVDPVVIMLVIDRENDRALL 265

Query: 239 SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298
           S+QSRFVPRMWSC+AGFIEPGESLEEAV+RETWEETGIEVGEVVYH+SQPWPVGP++MPC
Sbjct: 266 SKQSRFVPRMWSCLAGFIEPGESLEEAVKRETWEETGIEVGEVVYHSSQPWPVGPSNMPC 325

Query: 299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGV 358
           QLMVGF+AYAKSF+INVDK ELEDARWHSREDV+ ALTFAEY KAQRTAAAKVEQMCKGV
Sbjct: 326 QLMVGFFAYAKSFDINVDKGELEDARWHSREDVRNALTFAEYEKAQRTAAAKVEQMCKGV 385

Query: 359 ERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDA 399
           ER QSL++DFNVESGELAP+F+PGPFAIAHHLISSWVY + 
Sbjct: 386 ERQQSLSSDFNVESGELAPMFVPGPFAIAHHLISSWVYNEG 426

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088057|ref|XP_002308309.1| predicted protein [Populus trichocarpa] gi|222854285|gb|EEE91832.1| predicted protein [Populus trichocarpa]

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 285/399 (71%), Positives = 332/399 (83%), Gaps = 18/399 (4%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           M  +LQ+ AFAGNP+RSKTP+ T P SP  ALE+LKT+L+DN              S  S
Sbjct: 1   MPISLQSHAFAGNPLRSKTPQPTHPLSPALALETLKTQLVDN--------------SHQS 46

Query: 61  SSPDFKVLPFRKGRPL--TYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
           SS +FKVLPFRKGRPL  + S   +  P WHLGWISL DCK   + SG+E   ++L YLG
Sbjct: 47  SSLNFKVLPFRKGRPLASSTSTDADLGPTWHLGWISLADCKGLFSASGVEFTGDSLFYLG 106

Query: 119 SRSADDV--VYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHA 176
           S S  DV  VYWAIDVS  +SL +EF S+Q+CF+ELRT+MVATDWAD++AM DLA+AGHA
Sbjct: 107 SSSEQDVDVVYWAIDVSGENSLFTEFDSEQVCFIELRTLMVATDWADKQAMVDLAVAGHA 166

Query: 177 RALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRV 236
           +ALLEWHN+SRFCG+CGEKT+P E+G+ KQCSN  C++++YPRVDPVVIMLVIDRENDR 
Sbjct: 167 KALLEWHNISRFCGYCGEKTVPMESGRRKQCSNELCRRKVYPRVDPVVIMLVIDRENDRA 226

Query: 237 LLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM 296
           LL RQSRFVPRMWSC+AGFIEPGESLEEAVRRETWEET IEVGEV+YH+SQPWPVGP+SM
Sbjct: 227 LLGRQSRFVPRMWSCLAGFIEPGESLEEAVRRETWEETAIEVGEVMYHSSQPWPVGPSSM 286

Query: 297 PCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCK 356
           PCQLMVGF+AYAKS EI VDK ELEDA+WHSREDV+KAL FAEY KAQRTAAAKV+QMC+
Sbjct: 287 PCQLMVGFFAYAKSLEIKVDKAELEDAQWHSREDVRKALMFAEYEKAQRTAAAKVDQMCR 346

Query: 357 GVERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWV 395
           GVE+GQSL++DFNVESGELAP+F PGPFAIAH LI+SWV
Sbjct: 347 GVEKGQSLSSDFNVESGELAPMFFPGPFAIAHRLITSWV 385

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514398|ref|XP_003525893.1| PREDICTED: nudix hydrolase 19, chloroplastic-like [Glycine max]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 295/419 (70%), Positives = 333/419 (79%), Gaps = 23/419 (5%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MS NL+T AFAGNP+RS  P   DPFSP SALE+L TR+LD              +  SS
Sbjct: 29  MSINLRTHAFAGNPLRS--PNRVDPFSPASALETLTTRILDA-------------AHVSS 73

Query: 61  SSPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSR 120
            S DFKVLPFR GR L  S  G+T   W LGWI+L + K  L   G +L  ++ VYLGS 
Sbjct: 74  PSVDFKVLPFRNGRVLASSESGDT---WRLGWIALEEVKGLL---GADLSADSFVYLGSD 127

Query: 121 S-ADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARAL 179
           S +D VVYWAIDVS    L +EF   +LCFVELRT+MVATDW D + M +LAIAGHARAL
Sbjct: 128 SDSDSVVYWAIDVSRESGLVTEFSGVRLCFVELRTLMVATDWVDLKTMGNLAIAGHARAL 187

Query: 180 LEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLS 239
           LEWH +SRFCGHCGEKT+P EAG+ KQCSN SCK+RIYPR+DPVVIMLVIDRENDR LLS
Sbjct: 188 LEWHKISRFCGHCGEKTVPMEAGRRKQCSNESCKQRIYPRLDPVVIMLVIDRENDRALLS 247

Query: 240 RQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQ 299
           +QSRFVPRMWSC+AGFIEPGESLEEAVRRETWEETGIEVGEVVYH+SQPWPVGPNSMPCQ
Sbjct: 248 KQSRFVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEVGEVVYHSSQPWPVGPNSMPCQ 307

Query: 300 LMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVE 359
           LMVGF+AYAKS EINVDKEELEDA+WHSRE V+KALTFAEY KAQ+TA AKVEQMCKGVE
Sbjct: 308 LMVGFFAYAKSLEINVDKEELEDAQWHSREYVRKALTFAEYKKAQQTAVAKVEQMCKGVE 367

Query: 360 RGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDAP-DGVQVQTAPSSTSMSNL 417
           +  SL+ DFNVESGELAP+F+PGPFAIAHHLISSW + D   +G +  +  +S SMSNL
Sbjct: 368 KAHSLSTDFNVESGELAPMFVPGPFAIAHHLISSWAFPDQNVNGSECHSKQASGSMSNL 426

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636719|gb|ACU18695.1| unknown [Glycine max]

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 267/425 (62%), Positives = 318/425 (74%), Gaps = 25/425 (5%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MS NL + AF+GNP+ SK P   +P SP++ALE+L  R+  N  H  P            
Sbjct: 39  MSINLHSHAFSGNPLLSKFPLPGNPLSPSAALEALNARISLNNTHSSP------------ 86

Query: 61  SSPDFKVLPFRKGRPLTYS--GPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
            SP FKVLPFR GRPL  S  G G++ P+W LGW+ L D +    NSG +L  + LVYL 
Sbjct: 87  -SPSFKVLPFRNGRPLASSSAGTGDSPPIWDLGWLGLDDLRGIFENSGAQLSVDLLVYLN 145

Query: 119 SRSADDVVYWAIDVSDGDSLASEFGSKQ---LCFVELRTVMVATDWADQRAMADLAIAGH 175
           S S DD VYWAIDVSD      E GS     LCFVELRT+MVATDW+D + M +LAIAGH
Sbjct: 146 SSSEDDAVYWAIDVSDK---VPELGSNNAAGLCFVELRTLMVATDWSDLQLMGNLAIAGH 202

Query: 176 ARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDR 235
           A+ALLEWHN SRFCGHCGEKT+P EAG+ K+CSN SCKKRIYPRVDPVVIMLVIDRENDR
Sbjct: 203 AKALLEWHNFSRFCGHCGEKTVPMEAGRRKKCSNDSCKKRIYPRVDPVVIMLVIDRENDR 262

Query: 236 VLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS 295
            LL+++   + R+++C++GF EPGESLEEAVRRETWEETGIEVGEVVYH+SQPWPV PNS
Sbjct: 263 ALLAKRPMRIARLYTCLSGFTEPGESLEEAVRRETWEETGIEVGEVVYHSSQPWPVAPNS 322

Query: 296 MPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMC 355
           +PCQLMVGF+AYAKS EI VDK ELEDA+W SREDV+KALTFA+Y +AQRTAA KVEQMC
Sbjct: 323 IPCQLMVGFFAYAKSLEITVDKTELEDAQWFSREDVRKALTFAKYKQAQRTAAEKVEQMC 382

Query: 356 KGVERGQSLAADFNVESG--ELAPIFIPGPFAIAHHLISSWVYKD--APDGVQVQTAPSS 411
           KG+E+ +SLA+D NVES   + A I +PGPFAIA+HLISSW + D    +GV+  +    
Sbjct: 383 KGLEKNRSLASDLNVESADEQHASIVVPGPFAIAYHLISSWAFSDQNVVNGVECNSKKPI 442

Query: 412 TSMSN 416
            SM+N
Sbjct: 443 GSMTN 447

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513933|ref|XP_003525662.1| PREDICTED: LOW QUALITY PROTEIN: nudix hydrolase 19, chloroplastic-like [Glycine max]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 266/426 (62%), Positives = 322/426 (75%), Gaps = 26/426 (6%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           M  +L + AF+GNP+ SK P S  P SP+SALE+LK ++  N  H  P            
Sbjct: 1   MFLSLHSHAFSGNPLLSKFPLSGHPLSPSSALEALKAQIGLNNTHSSP------------ 48

Query: 61  SSPDFKVLPFRKGRPLTYS--GPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
            SP FKVLPFR GRPL  S  G G++ P+WHLGW+ L + +    NSG +L  ++LVYL 
Sbjct: 49  -SPSFKVLPFRNGRPLASSAAGSGDSPPIWHLGWLGLDEIRGIFENSGAQLSVDSLVYLS 107

Query: 119 SRSADDVVYWAIDVSDGDSLASEFGS--KQLCFVELRTVMVATDWADQRAMADLAIAGHA 176
           S + DD VYWAIDVSD      E GS  ++LCFV+LRT+MVATDW D   M +LAIAGHA
Sbjct: 108 SSAEDDAVYWAIDVSDK---VPELGSNKERLCFVDLRTLMVATDWXDLHVMGNLAIAGHA 164

Query: 177 RALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVI--DREND 234
           +ALLEWHN+SRFCGHCGEKT+P EAG+ K+CSN SCKKRIYPRV+PVVIMLVI  D E +
Sbjct: 165 KALLEWHNISRFCGHCGEKTVPMEAGRRKKCSNDSCKKRIYPRVEPVVIMLVIVIDXEKE 224

Query: 235 RVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPN 294
           RVLL+++   + R+++C++GF EPGESLEEAVRRETWEETGIEVGEVVYH+SQPWPV PN
Sbjct: 225 RVLLAKRPMHIARLYTCLSGFTEPGESLEEAVRRETWEETGIEVGEVVYHSSQPWPVAPN 284

Query: 295 SMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQM 354
           S+PCQLMVGF+AYAKS EI VDK ELEDA+W+SREDV+KALTFA+Y +AQRTAA KVEQM
Sbjct: 285 SIPCQLMVGFFAYAKSLEITVDKTELEDAQWYSREDVRKALTFAKYKQAQRTAAEKVEQM 344

Query: 355 CKGVERGQSLAADFNVESG--ELAPIFIPGPFAIAHHLISSWVYKD--APDGVQVQTAPS 410
           CKG+E+ QSLA+D NVES   + API  PGPFAIAHHLISSWV+ D    +GV+  +   
Sbjct: 345 CKGLEKNQSLASDLNVESADEQHAPIVFPGPFAIAHHLISSWVFSDQNVVNGVECNSKQP 404

Query: 411 STSMSN 416
             SM+N
Sbjct: 405 IRSMTN 410

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
TAIR|locus:2147665	438	NUDX19 "nudix hydrolase homolo	0.961	0.915	0.706	1.2e-161
UNIPROTKB|J9NRY3	460	NUDT12 "Uncharacterized protei	0.541	0.491	0.434	6.7e-45
UNIPROTKB|Q29RH3	444	NUDT12 "Peroxisomal NADH pyrop	0.541	0.509	0.424	7.6e-44
UNIPROTKB|E2RGZ2	426	NUDT12 "Uncharacterized protei	0.541	0.530	0.430	9.6e-44
UNIPROTKB|E7EM93	444	NUDT12 "Peroxisomal NADH pyrop	0.541	0.509	0.424	9.6e-44
UNIPROTKB|Q9BQG2	462	NUDT12 "Peroxisomal NADH pyrop	0.541	0.489	0.424	9.6e-44
MGI|MGI:1915243	462	Nudt12 "nudix (nucleoside diph	0.544	0.491	0.410	5.2e-43
UNIPROTKB|E1C2E5	465	NUDT12 "Uncharacterized protei	0.388	0.348	0.485	7.5e-42
ZFIN|ZDB-GENE-050417-164	433	zgc:112020 "zgc:112020" [Danio	0.498	0.480	0.415	8.4e-41
POMBASE|SPBC1778.03c	376	SPBC1778.03c "NADH pyrophospha	0.513	0.569	0.382	7.3e-38

TAIR|locus:2147665 NUDX19 "nudix hydrolase homolog 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 1574 (559.1 bits), Expect = 1.2e-161, P = 1.2e-161
 Identities = 296/419 (70%), Positives = 349/419 (83%)

Query:     1 MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHXXXXXXXX 60
             MS NL+T AFAGNP++SKTPKSTDPFSPTSA ESLKT +     H  P            
Sbjct:    36 MSMNLKTHAFAGNPLKSKTPKSTDPFSPTSAFESLKTLIPVIPNHSTPS----------- 84

Query:    61 XXPDFKVLPFRKGRPLTYSGPGE--TAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
               PDFKVLPF KGRPL +S  G+  T P+WHLGW+SL DCK+ LA+ G++L E++LVYLG
Sbjct:    85 --PDFKVLPFSKGRPLVFSSGGDANTTPIWHLGWVSLADCKVLLASCGVDLNEDSLVYLG 142

Query:   119 SRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARA 178
              +  +D+VYWA+D+++ D   SE G ++LCFVELRT+MVA DWADQRAM +LAIAG+ARA
Sbjct:   143 PKLEEDLVYWAVDLAE-DGFVSELGGRKLCFVELRTLMVAADWADQRAMDELAIAGNARA 201

Query:   179 LLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLL 238
             LLEWHNVS+FCG CG KT PKEAG+ KQCS+ +C+KR+YPRVDPVVIMLVIDRENDR LL
Sbjct:   202 LLEWHNVSQFCGSCGSKTFPKEAGRRKQCSDETCRKRVYPRVDPVVIMLVIDRENDRALL 261

Query:   239 SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298
             SRQSR+VPRMWSC+AGFIEPGESLEEAVRRETWEETGIEVG+VVYH+SQPWPVGP+SMPC
Sbjct:   262 SRQSRYVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEVGDVVYHSSQPWPVGPSSMPC 321

Query:   299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGV 358
             QLM+GF+A+AK+ +INVDKEELEDA+WHSRE+VKKAL  AEY KAQRTAAAKVEQ+CKGV
Sbjct:   322 QLMLGFFAFAKTLDINVDKEELEDAQWHSREEVKKALAVAEYRKAQRTAAAKVEQICKGV 381

Query:   359 ERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDAPDGVQVQTAPSSTSMSNL 417
             ER QSL+ DFN+ESGELAP+FIPGPFAIAHHLIS+WV   APD V  +   +  S+S+L
Sbjct:   382 ERSQSLSTDFNLESGELAPMFIPGPFAIAHHLISAWV-NQAPDDVHSKQQ-AGVSLSSL 438

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|J9NRY3 NUDT12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 437 (158.9 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
 Identities = 109/251 (43%), Positives = 144/251 (57%)

Query:    99 KIFLANSGIEL--KEEALVYLGS--RSADDVVYW-AIDVSDGDSLASE-FGSK-QLCFVE 151
             KI L   G+EL  K+E+  Y G   R  D +V W A+ V   DS+A+E F  + + C+  
Sbjct:   192 KITLIFLGVELEMKKESFNYAGEVPREEDGLVAWFALGV---DSVAAEEFKQRHENCYF- 247

Query:   152 LRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNAS 211
             L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C    
Sbjct:   248 LHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGSATKIEEGGYKRVCLKED 304

Query:   212 CKK------RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEA 265
             C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+A
Sbjct:   305 CPSLHGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIEDA 364

Query:   266 VRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARW 325
             VRRE  EE+G++VG V Y + QPWP     MP  LM+G  A A S EI VDK E+EDARW
Sbjct:   365 VRREVEEESGVKVGHVQYVSCQPWP-----MPSSLMIGCLAVAVSTEIKVDKNEIEDARW 419

Query:   326 HSREDVKKALT 336
              +RE V   LT
Sbjct:   420 FTREQVVDVLT 430

GO:0046872 "metal ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q29RH3 NUDT12 "Peroxisomal NADH pyrophosphatase NUDT12" [Bos taurus (taxid:9913)]

 Score = 425 (154.7 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
 Identities = 107/252 (42%), Positives = 145/252 (57%)

Query:    99 KIFLANSGIEL--KEEALVYLG--SRSADD-VVYW-AIDVSDGDSLASE-FGSK-QLCFV 150
             KI L   G+EL  K+E   Y G  S+  +D +V W A+ +   D++A+E F  + + C+ 
Sbjct:   175 KITLIFLGVELEMKKEFFNYAGEISKEEEDGLVAWFALGI---DTVAAEEFKQRHENCYF 231

Query:   151 ELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNA 210
              L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C   
Sbjct:   232 -LHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGNATKIEEGGYKRVCLKE 287

Query:   211 SCKK------RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEE 264
              C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+
Sbjct:   288 DCPSLHGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIED 347

Query:   265 AVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDAR 324
             AVRRE  EE+G++VG V Y + QPWP     MP  LM+G  A A S EI VDK E+EDAR
Sbjct:   348 AVRREVEEESGVKVGHVQYVSCQPWP-----MPSSLMIGCLAVAVSTEIKVDKNEIEDAR 402

Query:   325 WHSREDVKKALT 336
             W +RE V   LT
Sbjct:   403 WFTREQVVDVLT 414

GO:0005777 "peroxisome" evidence=IEA

GO:0035529 "NADH pyrophosphatase activity" evidence=IEA

GO:0019677 "NAD catabolic process" evidence=IEA

GO:0006742 "NADP catabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000210 "NAD+ diphosphatase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E2RGZ2 NUDT12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 426 (155.0 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 109/253 (43%), Positives = 144/253 (56%)

Query:    99 KIFLANSGIEL--KEEALVYLGS--RSADDVVYW-AIDVSDGDSLASE-FGSK-QLCFVE 151
             KI L   G+EL  K+E+  Y G   R  D +V W A+ V   DS+A+E F  + + C+  
Sbjct:   156 KITLIFLGVELEMKKESFNYAGEVPREEDGLVAWFALGV---DSVAAEEFKQRHENCYF- 211

Query:   152 LRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNAS 211
             L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C    
Sbjct:   212 LHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGSATKIEEGGYKRVCLKED 268

Query:   212 CKK------RIYPRV--DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLE 263
             C          YPRV  DPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E
Sbjct:   269 CPSLHGVHNTSYPRVETDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIE 328

Query:   264 EAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDA 323
             +AVRRE  EE+G++VG V Y + QPWP     MP  LM+G  A A S EI VDK E+EDA
Sbjct:   329 DAVRREVEEESGVKVGHVQYVSCQPWP-----MPSSLMIGCLAVAVSTEIKVDKNEIEDA 383

Query:   324 RWHSREDVKKALT 336
             RW +RE V   LT
Sbjct:   384 RWFTREQVVDVLT 396

GO:0046872 "metal ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|E7EM93 NUDT12 "Peroxisomal NADH pyrophosphatase NUDT12" [Homo sapiens (taxid:9606)]

 Score = 424 (154.3 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 107/252 (42%), Positives = 143/252 (56%)

Query:    99 KIFLANSGIEL--KEEALVYLGS--RSADD-VVYW-AIDVSDGDSLASE-FGSK-QLCFV 150
             KI L   G+EL  K++ L Y G   R  +D +V W A+ +   D +A+E F  + + C+ 
Sbjct:   175 KITLIFLGVELEIKDKLLNYAGEVPREEEDGLVAWFALGI---DPIAAEEFKQRHENCYF 231

Query:   151 ELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNA 210
              L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C   
Sbjct:   232 -LHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGNATKIEEGGYKRLCLKE 287

Query:   211 SCKK------RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEE 264
              C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+
Sbjct:   288 DCPSLNGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIED 347

Query:   265 AVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDAR 324
             AVRRE  EE+G++VG V Y   QPWP     MP  LM+G  A A S EI VDK E+EDAR
Sbjct:   348 AVRREVEEESGVKVGHVQYVACQPWP-----MPSSLMIGCLALAVSTEIKVDKNEIEDAR 402

Query:   325 WHSREDVKKALT 336
             W +RE V   LT
Sbjct:   403 WFTREQVLDVLT 414

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9BQG2 NUDT12 "Peroxisomal NADH pyrophosphatase NUDT12" [Homo sapiens (taxid:9606)]

 Score = 424 (154.3 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 107/252 (42%), Positives = 143/252 (56%)

Query:    99 KIFLANSGIEL--KEEALVYLGS--RSADD-VVYW-AIDVSDGDSLASE-FGSK-QLCFV 150
             KI L   G+EL  K++ L Y G   R  +D +V W A+ +   D +A+E F  + + C+ 
Sbjct:   193 KITLIFLGVELEIKDKLLNYAGEVPREEEDGLVAWFALGI---DPIAAEEFKQRHENCYF 249

Query:   151 ELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNA 210
              L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C   
Sbjct:   250 -LHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGNATKIEEGGYKRLCLKE 305

Query:   211 SCKK------RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEE 264
              C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+
Sbjct:   306 DCPSLNGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIED 365

Query:   265 AVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDAR 324
             AVRRE  EE+G++VG V Y   QPWP     MP  LM+G  A A S EI VDK E+EDAR
Sbjct:   366 AVRREVEEESGVKVGHVQYVACQPWP-----MPSSLMIGCLALAVSTEIKVDKNEIEDAR 420

Query:   325 WHSREDVKKALT 336
             W +RE V   LT
Sbjct:   421 WFTREQVLDVLT 432

GO:0046872 "metal ion binding" evidence=IEA

GO:0000210 "NAD+ diphosphatase activity" evidence=IDA

GO:0035529 "NADH pyrophosphatase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0006742 "NADP catabolic process" evidence=IDA

GO:0019677 "NAD catabolic process" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

MGI|MGI:1915243 Nudt12 "nudix (nucleoside diphosphate linked moiety X)-type motif 12" [Mus musculus (taxid:10090)]

 Score = 416 (151.5 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 103/251 (41%), Positives = 139/251 (55%)

Query:    99 KIFLANSGIEL--KEEALVYLGS---RSADDVVYW-AIDVSDGDSLASEFGSK-QLCFVE 151
             KI L   G+EL  ++ +    G       D +V W A+ +  G   A EF  + + C+  
Sbjct:   193 KITLVFLGVELEMRKGSPAQAGGVPEEEEDGLVAWFALGIEPG--AAEEFKQRHENCYF- 249

Query:   152 LRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNAS 211
             L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C   +
Sbjct:   250 LHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGSATKIEEGGYKRVCVRET 306

Query:   212 CKK------RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEA 265
             C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+A
Sbjct:   307 CPSLQGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIEDA 366

Query:   266 VRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARW 325
             VRRE  EE+G++VG V Y + QPWP     MP  LM+G  A A S EI VDK E+EDARW
Sbjct:   367 VRREVEEESGVKVGHVQYVSCQPWP-----MPSSLMIGCLAVAVSTEIKVDKNEIEDARW 421

Query:   326 HSREDVKKALT 336
              +RE V   LT
Sbjct:   422 FTREQVVDVLT 432

GO:0000210 "NAD+ diphosphatase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005777 "peroxisome" evidence=ISO

GO:0006742 "NADP catabolic process" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0019677 "NAD catabolic process" evidence=ISO

GO:0035529 "NADH pyrophosphatase activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1C2E5 NUDT12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 406 (148.0 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
 Identities = 84/173 (48%), Positives = 105/173 (60%)

Query:   169 DLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKK------RIYPRVDP 222
             +  +   AR++L WH+  RFC  CG  T  +E G  K C    C          YPRVDP
Sbjct:   267 EAGVVAQARSILAWHSRYRFCPTCGSATKIEEGGYKKTCVKEDCPSLQGVHNTSYPRVDP 326

Query:   223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVV 282
             VVIM VI  + +  LL RQ RF P M++C+AGF+EPGE++E+AVRRE  EE G++VG V 
Sbjct:   327 VVIMQVIHPDGNHCLLGRQKRFPPGMFTCLAGFVEPGETIEDAVRREVEEEAGVKVGHVQ 386

Query:   283 YHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKAL 335
             Y + QPWP     MP  LM+G  A A S EI VDK E+EDARW +RE V   L
Sbjct:   387 YVSCQPWP-----MPSSLMIGCLAVAVSTEIRVDKNEIEDARWFTREQVVDVL 434

GO:0046872 "metal ion binding" evidence=IEA

GO:0000210 "NAD+ diphosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0006742 "NADP catabolic process" evidence=IEA

GO:0019677 "NAD catabolic process" evidence=IEA

GO:0035529 "NADH pyrophosphatase activity" evidence=IEA

ZFIN|ZDB-GENE-050417-164 zgc:112020 "zgc:112020" [Danio rerio (taxid:7955)]

 Score = 405 (147.6 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
 Identities = 96/231 (41%), Positives = 134/231 (58%)

Query:   114 LVYLGSRSADDVVYWAIDVSDG--DSLASEFGSKQLCFVELRTVMVAT-DWADQRAMADL 170
             LV+LG +  + V ++A+   D   D L +  G    CF  L+  M      +D+    D 
Sbjct:   186 LVFLGVQKKE-VAWFAVSTEDEPTDLLETLEGE---CFF-LQPAMPGLLTMSDE----DA 236

Query:   171 AIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKK------RIYPRVDPVV 224
              +   AR++L WH+  RFC  CG  T  ++ G  + C  A C+         YPRVDPVV
Sbjct:   237 GVVAQARSVLAWHSRYRFCPTCGSNTRVEDGGYKRTCLRAGCRSLQGVYNTCYPRVDPVV 296

Query:   225 IMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYH 284
             IMLVI  + ++ LL R+  F P M+SC+AGFIEPGE +E AVRRE  EE+G++V  + Y 
Sbjct:   297 IMLVIHPDGNQCLLGRKKIFPPGMFSCLAGFIEPGECVEAAVRREVQEESGVQVSAIQYV 356

Query:   285 TSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKAL 335
              SQPWP     MP  LM+G +  A + +INVD++ELE+ARW +R+ V  AL
Sbjct:   357 CSQPWP-----MPSCLMIGCHCVALTTDINVDQQELEEARWFTRQQVIDAL 402

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

POMBASE|SPBC1778.03c SPBC1778.03c "NADH pyrophosphatase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 366 (133.9 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 93/243 (38%), Positives = 138/243 (56%)

Query:   114 LVYLGSRSADDVV-YW------AIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRA 166
             LVY+G+   +     W      AID++  D L          FV LR++   T+   Q +
Sbjct:   103 LVYMGNEERNGPTDNWSQHNVFAIDITGIDELQQSIRDNGGTFVNLRSIF--TEQY-QLS 159

Query:   167 MADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSN------ASC--KKRI-- 216
              +D      AR++L+W +  RFC  CG++ IP   G    CS+      ++C  KK I  
Sbjct:   160 ASDSGACAFARSILDWISRYRFCPGCGKRNIPTMGGTKLVCSDVLLNDDSNCPSKKGINN 219

Query:   217 --YPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEET 274
               YPR DP VIM+++  +   +LL R  R    +++C+AGF+EPGESLEEAV RET+EE+
Sbjct:   220 YQYPRTDPCVIMVILSHDMQHILLGRALRHPKGLYACLAGFLEPGESLEEAVVRETYEES 279

Query:   275 GIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYA-KSFEINVDKE-ELEDARWHSREDVK 332
             G++V +V+Y+ SQPWP      P  LM+  +  A K+ +I  DK+ ELED R+ SRE+V 
Sbjct:   280 GVDVEKVLYYASQPWP-----FPQSLMLACFGIARKNAKIQRDKDLELEDVRFFSREEVL 334

Query:   333 KAL 335
             ++L
Sbjct:   335 RSL 337

GO:0000210 "NAD+ diphosphatase activity" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006734 "NADH metabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94A82	NUD19_ARATH	3, ., 6, ., 1, ., 2, 2	0.7064	0.9616	0.9155	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.976
3rd Layer	3.6.1.13	LOW CONFIDENCE prediction!
3rd Layer	3.6.1.22	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00016858001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (405 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019982001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (308 aa)						•			0.916
	GSVIVG00033381001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (93 aa)						•	•		0.906
	GSVIVG00034123001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (384 aa)						•			0.899
	GSVIVG00030474001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (329 aa)						•			0.899
	GSVIVG00024584001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (522 aa)						•			0.899
	GSVIVG00019510001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (557 aa)						•			0.899
	GSVIVG00016539001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (337 aa)						•			0.899
	GSVIVG00006686001	SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (724 aa)						•			0.899
	GSVIVG00030263001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (142 aa)							•		0.481
	GSVIVG00013338001	SubName- Full=Chromosome undetermined scaffold_463, whole genome shotgun sequence; (476 aa)	•						•		0.443

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	417
COG2816	279	COG2816, NPY1, NTP pyrophosphohydrolases containin	1e-72
cd03429	131	cd03429, NADH_pyrophosphatase, NADH pyrophosphatas	2e-64
PRK00241	256	PRK00241, nudC, NADH pyrophosphatase; Reviewed	3e-55
pfam00293	133	pfam00293, NUDIX, NUDIX domain	2e-22
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	8e-19
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	7e-14
cd04677	132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	7e-14
cd04664	129	cd04664, Nudix_Hydrolase_7, Members of the Nudix h	1e-12
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	3e-12
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	8e-12
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	2e-11
cd04699	129	cd04699, Nudix_Hydrolase_39, Members of the Nudix	5e-11
cd04681	130	cd04681, Nudix_Hydrolase_22, Members of the Nudix	1e-10
cd03427	137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	1e-10
PRK10729	202	PRK10729, nudF, ADP-ribose pyrophosphatase NudF; P	2e-09
cd04511	130	cd04511, Nudix_Hydrolase_4, Members of the Nudix h	3e-09
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	3e-09
cd04665	118	cd04665, Nudix_Hydrolase_8, Members of the Nudix h	4e-09
cd03675	134	cd03675, Nudix_Hydrolase_2, Contains a crystal str	1e-08
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	5e-08
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	8e-08
cd04685	133	cd04685, Nudix_Hydrolase_26, Members of the Nudix	1e-07
cd03425	124	cd03425, MutT_pyrophosphohydrolase, The MutT pyrop	1e-07
TIGR00052	185	TIGR00052, TIGR00052, nudix-type nucleoside diphos	1e-07
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	1e-07
PRK08999	312	PRK08999, PRK08999, hypothetical protein; Provisio	1e-07
cd04695	131	cd04695, Nudix_Hydrolase_36, Members of the Nudix	2e-07
cd04667	112	cd04667, Nudix_Hydrolase_10, Members of the Nudix	3e-07
cd03674	138	cd03674, Nudix_Hydrolase_1, Members of the Nudix h	3e-07
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	7e-07
pfam09296	91	pfam09296, NUDIX-like, NADH pyrophosphatase-like r	2e-06
cd04678	129	cd04678, Nudix_Hydrolase_19, Members of the Nudix	2e-06
PRK09438	148	PRK09438, nudB, dihydroneopterin triphosphate pyro	3e-06
cd04691	117	cd04691, Nudix_Hydrolase_32, Members of the Nudix	3e-06
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	4e-06
cd04671	123	cd04671, Nudix_Hydrolase_13, Members of the Nudix	4e-06
cd04684	128	cd04684, Nudix_Hydrolase_25, Contains a crystal st	6e-06
cd04682	122	cd04682, Nudix_Hydrolase_23, Members of the Nudix	7e-06
TIGR02705	156	TIGR02705, nudix_YtkD, nucleoside triphosphatase Y	7e-06
pfam09297	32	pfam09297, zf-NADH-PPase, NADH pyrophosphatase zin	3e-05
cd04696	125	cd04696, Nudix_Hydrolase_37, Members of the Nudix	3e-05
cd04694	143	cd04694, Nudix_Hydrolase_35, Members of the Nudix	3e-05
cd04666	122	cd04666, Nudix_Hydrolase_9, Members of the Nudix h	4e-05
PRK15472	141	PRK15472, PRK15472, nucleoside triphosphatase NudI	7e-05
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	8e-05
cd03426	157	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse)	1e-04
cd04672	123	cd04672, Nudix_Hydrolase_14, Members of the Nudix	1e-04
cd04683	120	cd04683, Nudix_Hydrolase_24, Members of the Nudix	1e-04
PRK00714	156	PRK00714, PRK00714, RNA pyrophosphohydrolase; Revi	2e-04
cd04689	125	cd04689, Nudix_Hydrolase_30, Members of the Nudix	2e-04
cd04697	126	cd04697, Nudix_Hydrolase_38, Members of the Nudix	3e-04
PRK05379	340	PRK05379, PRK05379, bifunctional nicotinamide mono	4e-04
cd04679	125	cd04679, Nudix_Hydrolase_20, Members of the Nudix	5e-04
PRK15009	191	PRK15009, PRK15009, GDP-mannose pyrophosphatase Nu	7e-04
cd04687	128	cd04687, Nudix_Hydrolase_28, Members of the Nudix	0.001
cd04700	142	cd04700, DR1025_like, DR1025 from Deinococcus radi	0.002
COG1443	185	COG1443, Idi, Isopentenyldiphosphate isomerase [Li	0.002
PRK10776	129	PRK10776, PRK10776, nucleoside triphosphate pyroph	0.003
PLN02325	144	PLN02325, PLN02325, nudix hydrolase	0.004

>gnl|CDD|225373 COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

 Score =  229 bits (585), Expect = 1e-72
 Identities = 104/317 (32%), Positives = 143/317 (45%), Gaps = 63/317 (19%)

Query: 88  WHLGWISLGDCKIFLAN--------SGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLA 139
               W+   + K+ L +          ++L  EAL+ +G         +A+ + +   L 
Sbjct: 18  DSTLWLVFSEGKLLLKDGELPFGAAENLDLVGEALLGIGEWG--GEPVFAVWLVEEIELP 75

Query: 140 SEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPK 199
             F       V+LR+++      +        +A  A  LLEW+   RFCG CG KT P+
Sbjct: 76  EPFE-----LVDLRSLL-----TELDE-GLFGLAARAVQLLEWYRSHRFCGRCGTKTYPR 124

Query: 200 EAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPG 259
           E G  + C    C    +PR+DP VI+ VI    D +LL+R  R  P M+S +AGF+EPG
Sbjct: 125 EGGWARVCPK--CGHEHFPRIDPCVIVAVIRG--DEILLARHPRHFPGMYSLLAGFVEPG 180

Query: 260 ESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEE 319
           E+LE+AV RE +EE GI+V  V Y  SQPWP      P  LM+GF A   S EI  D+ E
Sbjct: 181 ETLEQAVAREVFEEVGIKVKNVRYVGSQPWP-----FPHSLMLGFMAEYDSGEITPDEGE 235

Query: 320 LEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIF 379
           LEDARW SR++V  AL         R                                + 
Sbjct: 236 LEDARWFSRDEVLPAL--PPDGTIAR-------------------------------RLI 262

Query: 380 IPGPFAIAHHLISSWVY 396
            P   AIA  LI +W  
Sbjct: 263 EPTLAAIARELIKAWAE 279

Length = 279

>gnl|CDD|239521 cd03429, NADH_pyrophosphatase, NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

 Score =  202 bits (516), Expect = 2e-64
 Identities = 75/176 (42%), Positives = 91/176 (51%), Gaps = 45/176 (25%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281
           P VI+LVID   DR+LL+RQ RF P M+S +AGF+EPGESLEEAVRRE  EE GI V  +
Sbjct: 1   PAVIVLVID-GGDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNI 59

Query: 282 VYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYI 341
            Y  SQPWP      P  LM+GF A A S EI VD +ELEDARW SR++V+ A       
Sbjct: 60  RYVGSQPWP-----FPSSLMLGFTAEADSGEIVVDDDELEDARWFSRDEVRAA------- 107

Query: 342 KAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYK 397
                                                 +P P +IA  LI +W+  
Sbjct: 108 --------------------------------GEGLPELPPPGSIARQLIEAWLEG 131

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer. Length = 131

>gnl|CDD|234699 PRK00241, nudC, NADH pyrophosphatase; Reviewed

 Score =  182 bits (465), Expect = 3e-55
 Identities = 66/186 (35%), Positives = 101/186 (54%), Gaps = 15/186 (8%)

Query: 150 VELRTVMVATDWADQRAMADL-----AIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKL 204
           V    +    +    R + DL      + G A  L E++   RFCG+CG    P +    
Sbjct: 59  VRQDPLR-GHEMGSLRQLLDLDDGLFQLLGRAVQLAEFYRSHRFCGYCGHPMHPSKTEWA 117

Query: 205 KQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEE 264
             C +  C++R YPR+ P +I+ V  R  D +LL+R  R    +++ +AGF+E GE+LE+
Sbjct: 118 MLCPH--CRERYYPRIAPCIIVAV--RRGDEILLARHPRHRNGVYTVLAGFVEVGETLEQ 173

Query: 265 AVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDAR 324
            V RE  EE+GI+V  + Y  SQPWP  P+S+    M+GF+A   S EI  D +E+ DA+
Sbjct: 174 CVAREVMEESGIKVKNLRYVGSQPWPF-PHSL----MLGFHADYDSGEIVFDPKEIADAQ 228

Query: 325 WHSRED 330
           W   ++
Sbjct: 229 WFRYDE 234

Length = 256

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 91.8 bits (228), Expect = 2e-22
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 5/126 (3%)

Query: 222 PVVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG 279
              + +V+  E+  VLL R+SR    P +W    G +EPGES EEA  RE  EETG+ V 
Sbjct: 2   RRAVGVVLLNEDGEVLLVRRSRPPVFPGLWELPGGKVEPGESPEEAAVRELEEETGLRVL 61

Query: 280 EVVYHTSQPWPVGPNSMPCQLMVGFYAYAKS--FEINVDKEELEDARWHSREDVKKALTF 337
            ++      +P  P     + +  F A       E   +++E+ + RW   E++ + L  
Sbjct: 62  LLLLLGVLEYP-APGRDGGEHVHVFLAELLGGEPEPQPNEDEVSEVRWVPLEELLELLLA 120

Query: 338 AEYIKA 343
            E  + 
Sbjct: 121 GEIREV 126

Length = 133

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 81.4 bits (201), Expect = 8e-19
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG--E 280
           V +  VI  E+ RVLL R++     +W    G +EPGE+LEEA  RE  EETG++V    
Sbjct: 1   VAVGAVILDEDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLR 60

Query: 281 VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEI-NVDKEELEDARWHSREDVKKALTFAE 339
           ++       P         ++  F A     E   +  +E+ + RW + +++        
Sbjct: 61  LLGVYEVESPDEGEHA---VVFVFLARLVGGEPTLLPPDEISEVRWVTLDELPALALSPA 117

Query: 340 Y 340
            
Sbjct: 118 L 118

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 67.9 bits (167), Expect = 7e-14
 Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 17/139 (12%)

Query: 219 RVDPVVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIEPGESLEEAVRRETWEETGI 276
             D V ++   D  + +V+L RQ R      +    AG I+PGE  EEA RRE  EETG 
Sbjct: 1   HPDAVAVLPYDD--DGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGY 58

Query: 277 EVGEVV----YHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDAR--WHSRED 330
           E G++     ++ S      P     + +  F A   S       +E ED        ++
Sbjct: 59  EAGDLEKLGSFYPS------PGFS-DERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDE 111

Query: 331 VKKALTFAEYIKAQRTAAA 349
             + L   E I      A 
Sbjct: 112 ALELLADGEIIDDATLIAL 130

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 68.0 bits (167), Expect = 7e-14
 Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 10/108 (9%)

Query: 224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV-- 281
             +++++ E   VLL  Q R     W    G +E GESLEE  RRE  EETG+EV E+  
Sbjct: 10  AGVILLN-EQGEVLL--QKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEELEL 66

Query: 282 --VYHTSQPWPVGPNSMPCQLMVGFYAYAKSFE--INVDKEELEDARW 325
             VY   + +   PN    Q +V  Y   K F   +  D +E  + ++
Sbjct: 67  LGVYSGKEFYVK-PNGDDEQYIVTLYYVTKVFGGKLVPDGDETLELKF 113

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 132

>gnl|CDD|240022 cd04664, Nudix_Hydrolase_7, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 33/125 (26%), Positives = 45/125 (36%), Gaps = 9/125 (7%)

Query: 218 PRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE 277
           PR   VV          RVLL R+S      W  + G IE GES  EA RRE  EETG++
Sbjct: 1   PRSVLVVP--YRLTGEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLD 58

Query: 278 VGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDK-----EELEDARWHSREDVK 332
              +                   +   + +A  F +  D       E +   W   E+  
Sbjct: 59  PERLTLLDRGASIAFVEFTDNGRVWTEHPFA--FHLPSDAVVTLDWEHDAFEWVPPEEAA 116

Query: 333 KALTF 337
             L +
Sbjct: 117 ALLLW 121

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 8/114 (7%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV--- 278
           P V  +V D +  RVLL R  R    +W+   G +EPGES  +   RE  EETG++V   
Sbjct: 3   PGVTAVVRD-DEGRVLLIR--RSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVT 59

Query: 279 GEVVYHT--SQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSRED 330
           G V  +T            +   L + F       E+ V  +E  D  W   + 
Sbjct: 60  GLVGIYTGPVHVVTYPNGDVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDG 113

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 62.9 bits (152), Expect = 8e-12
 Identities = 37/136 (27%), Positives = 53/136 (38%), Gaps = 12/136 (8%)

Query: 218 PRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLE-EAVRRETWEETGI 276
              D  V +LV       VLL  Q R    +W    G +EPGE L  EA  RE  EETG+
Sbjct: 8   KVRDVAVAVLVGRDGPGEVLL-AQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGL 66

Query: 277 EVGEVVYHTS---QPWPVGPNSMPCQLMVGFYAYAKSFEINV-------DKEELEDARWH 326
            V +          P P   +S+  +    F+       + V         EELED  W 
Sbjct: 67  RVKDERLELLGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWV 126

Query: 327 SREDVKKALTFAEYIK 342
             +++   +   + +K
Sbjct: 127 PLDELAALVLAEDQVK 142

Length = 161

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 21/121 (17%)

Query: 227 LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE---VGEVVY 283
           LV++ E + VL+ ++    P  W    G ++PGE + +   RE  EETGI+   V  V +
Sbjct: 8   LVLN-EKNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGF 66

Query: 284 HTSQPWPVGPNSM--PCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYI 341
             + P   G + +   C+L         SF+IN D  E+  A+W         +   EYI
Sbjct: 67  RHAHPGAFGKSDLYFICRLK------PLSFDINFDTSEIAAAKW---------MPLEEYI 111

Query: 342 K 342
            
Sbjct: 112 S 112

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 59.7 bits (145), Expect = 5e-11
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 223 VVIMLVIDRENDRVLL---SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           V +  +I ++  R+L+   S+  R  P  W    G +E GE+ EEA++RE +EETG+ V
Sbjct: 2   VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTV 60

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240037 cd04681, Nudix_Hydrolase_22, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 225 IMLVIDRENDRVLLSRQSRFVPR-MWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283
           + ++I  E+  +L+ R++R   +       GF++PGES EEA+ RE  EETG++V E+ Y
Sbjct: 4   VGVLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSY 63

Query: 284 HTSQP 288
             S P
Sbjct: 64  LFSLP 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

 Score = 58.7 bits (143), Expect = 1e-10
 Identities = 19/66 (28%), Positives = 31/66 (46%)

Query: 226 MLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT 285
           +  I   +  +LL+R+       W+   G +EPGE+ EE   RE  EETG+ +  +    
Sbjct: 5   LCFIKDPDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVG 64

Query: 286 SQPWPV 291
              +P 
Sbjct: 65  IIKFPF 70

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases. Length = 137

>gnl|CDD|182682 PRK10729, nudF, ADP-ribose pyrophosphatase NudF; Provisional

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 43/129 (33%), Positives = 60/129 (46%), Gaps = 16/129 (12%)

Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRF-------VPRMWSCIAGFIEPGESLEEA 265
           ++ I+ R    V +L  D   D V+L  Q R         P +   +AG IE GES+E+ 
Sbjct: 42  RREIFERGHAAV-LLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDV 100

Query: 266 VRRETWEETGIEVGE---VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELED 322
            RRE  EE G+ VG    V+ + + P   G  S    +MVG      +  I+   +E ED
Sbjct: 101 ARREAIEEAGLIVGRTKPVLSYLASP---GGTSERSSIMVGEVDATTASGIHGLADENED 157

Query: 323 ARWH--SRE 329
            R H  SRE
Sbjct: 158 IRVHVVSRE 166

Length = 202

>gnl|CDD|239948 cd04511, Nudix_Hydrolase_4, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 220 VDPVVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRETWEETGIE 277
            +P +I+  +     +VLL R++   PR   W+  AGF+E GE+ E+   RETWEE G  
Sbjct: 10  QNPKIIVGCVPEWEGKVLLCRRA-IEPRHGFWTLPAGFMENGETTEQGALRETWEEAGAR 68

Query: 278 V 278
           V
Sbjct: 69  V 69

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETG--IEVGE 280
           V +  +I R    +L+ R +      W+   GF+E GE+LEEA RRE  EETG  + V E
Sbjct: 11  VAVGALIVRNGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLE 70

Query: 281 VVYHTSQP 288
           ++     P
Sbjct: 71  LLAVFDDP 78

Length = 145

>gnl|CDD|240023 cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 227 LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283
           LVI   +D +LL R      R W    G +EPGE++EEA RRE WEETG E+G +  
Sbjct: 4   LVICFYDDGLLLVRHKD---RGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTL 57

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|239647 cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 18/26 (69%), Positives = 19/26 (73%)

Query: 253 AGFIEPGESLEEAVRRETWEETGIEV 278
           AG +EPGESL EA  RET EETG  V
Sbjct: 30  AGHLEPGESLIEAAVRETLEETGWHV 55

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 134

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 16/118 (13%)

Query: 229 IDRENDRVLL-SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV------GEV 281
                  VLL  R        WS   G +EPGE+  EA  RE  EETGI        G +
Sbjct: 11  GSDGGIEVLLIHRPRGDD---WSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTI 67

Query: 282 VYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDK-EELEDARWHSREDVKKALTFA 338
            Y  S            + +  +   A   E      EE+++ RW   ++ +  L++ 
Sbjct: 68  RYWFS-----SSGKRVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLSYP 120

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 50.3 bits (121), Expect = 8e-08
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 7/66 (10%)

Query: 224 VIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRETWEETGI--EVG 279
           V  +V      RVLL R++   P   +WS   G +E GE+LE+A  RE  EETG+  EVG
Sbjct: 3   VGAVVFR--GGRVLLVRRAN-PPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVG 59

Query: 280 EVVYHT 285
            ++   
Sbjct: 60  RLLTVV 65

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240041 cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 227 LVIDRENDRVLLSRQS---RFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           +++D + DRVLL R        P  W    G +EPGES E+A RRE  EETGI V
Sbjct: 6   VLLDPD-DRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITV 59

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 133

>gnl|CDD|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 12/58 (20%)

Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGF-------IEPGESLEEAVRRETWEETGIEV 278
           +I  ++ R+L+++  R   +      G        +EPGE+ E+A+ RE  EE GIEV
Sbjct: 7   IIIDDDGRILIAQ--RPAGKHL---GGLWEFPGGKVEPGETPEQALVRELREELGIEV 59

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides. Length = 124

>gnl|CDD|129162 TIGR00052, TIGR00052, nudix-type nucleoside diphosphatase, YffH/AdpP family

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSR-------FVPRMWSCIAGFIEPGESLEEA 265
            + IY R +   ++L  D + D V+L  Q R         P +    AG +E GES E+ 
Sbjct: 37  TREIYDRGNAAAVLL-YDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDV 95

Query: 266 VRRETWEETGIEVGEV 281
            RRE  EE G +V  +
Sbjct: 96  ARREAIEEAGYQVKNL 111

Members of this family include proteins of about 200 amino acids, including the recently characterized nudix hydrolase YffH, shows to be highly active as a GDP-mannose pyrophosphatase. It also includes the C-terminal half of a 361-amino acid protein, TrgB from Rhodobacter sphaeroides, shown experimentally to help confer tellurite resistance. This model also hits a region near the C-terminus of a 1092-amino acid protein of C. elegans [Unknown function, Enzymes of unknown specificity]. Length = 185

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 4/103 (3%)

Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 287
           V+   + RVLL R   + P  W    G +E GE+  EA RRE  EE GI +  VV     
Sbjct: 6   VVTDADGRVLLVR-HTYGP-GWYLPGGGLERGETFAEAARRELLEELGIRL-AVVAELLG 62

Query: 288 PWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSRED 330
            +    +     ++V F A A +  +     E+ +AR+   + 
Sbjct: 63  VYYHSASGSWDHVIV-FRARADTQPVIRPSHEISEARFFPPDA 104

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|236361 PRK08999, PRK08999, hypothetical protein; Provisional

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 9/74 (12%)

Query: 218 PRVDPVVIMLVIDRENDRVLLSR--QSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETG 275
            R+   V   VI   + R+LL+R  + +    +W    G +EPGE++E+A+ RE  EE G
Sbjct: 3   KRIH--VAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELG 60

Query: 276 IEVGEVVYHTSQPW 289
           IEV       ++P 
Sbjct: 61  IEVTA-----ARPL 69

Length = 312

>gnl|CDD|240051 cd04695, Nudix_Hydrolase_36, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 11/121 (9%)

Query: 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE-- 280
            V++  +D+E  +VLL ++ + +   W  +AG +E GE+  +A  RE  EETGI + E  
Sbjct: 4   GVLLRSLDKE-TKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELY 62

Query: 281 VVYHTSQPWPVGPNS---MPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTF 337
              +  Q +    N     P    VGF    +   +N    E  + RW S  +  +   F
Sbjct: 63  NADYLEQFYEANDNRILMAPV--FVGFVPPHQEVVLN---HEHTEYRWCSFAEALELAPF 117

Query: 338 A 338
            
Sbjct: 118 P 118

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|240025 cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283
           VI R   RVLL R+S      W+   G IEPGE+  +A RRE  EETG++  +++Y
Sbjct: 5   VICRRGGRVLLVRKSG---SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLY 57

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 112

>gnl|CDD|239646 cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 12/123 (9%)

Query: 227 LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV-GEVVYHT 285
            V++ +  +VLL+   +     W    G I+P ESL EA  RE  EETGIE+ G      
Sbjct: 8   FVVNPDRGKVLLTHHRKL--GSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSV 65

Query: 286 SQPWPVGPNSMPCQLMVG--------FYAYAKSFEINVDK-EELEDARWHSREDVKKALT 336
                V P     +  V         F A A + ++   K +E +  RW   +++     
Sbjct: 66  LVDLDVHPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASLEL 125

Query: 337 FAE 339
             +
Sbjct: 126 PED 128

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 138

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281
           P V +++ + +  +V + R+    P  W    G I+ GE  E+A  RE  EETG++   V
Sbjct: 4   PNVGVVLFNEDG-KVFVGRRIDT-PGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSV 61

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|220167 pfam09296, NUDIX-like, NADH pyrophosphatase-like rudimentary NUDIX domain

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 28/116 (24%)

Query: 67  VLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVV 126
            L F  G+ L     G              +  +FL                    +   
Sbjct: 4   WLLFNGGQLLLKDNDGALPRGEAAELGLPLEEAVFLGLL-----------------EGRP 46

Query: 127 YWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEW 182
            +A+DVS+   L          FV+LR +++  D           +AG AR LL W
Sbjct: 47  VFAVDVSEDAELPEGGE-----FVDLRALLLLLD------EELAGLAGRARQLLHW 91

The N-terminal domain in NADH pyrophosphatase, which has a rudiment Nudix fold according to SCOP. Length = 91

>gnl|CDD|240034 cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 218 PRVDPVVIMLVIDRENDRVLLS-RQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI 276
           PRV   V +L       +VLL  R+       W+   G +E GES EE   RE  EETG+
Sbjct: 1   PRVGVGVFVL---NPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGL 57

Query: 277 EVGEVVYHT 285
            +  V + T
Sbjct: 58  HIENVQFLT 66

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|236516 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 222 PVVIMLVIDRENDRVL-LSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           PV +++VI   +  VL L R     P  W  + G +E GE+  +   RE  EETGI+V
Sbjct: 7   PVSVLVVIYTPDLGVLMLQRADD--PDFWQSVTGSLEEGETPAQTAIREVKEETGIDV 62

Length = 148

>gnl|CDD|240047 cd04691, Nudix_Hydrolase_32, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 36/131 (27%), Positives = 52/131 (39%), Gaps = 18/131 (13%)

Query: 222 PVVIMLVIDRENDRVLLSRQS---RFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
            VV +L  D   D+VLL R+S      P   +   G IE GES EEA+ RE  EE G++ 
Sbjct: 2   GVVGVLFSD---DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDP 58

Query: 279 GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFA 338
               Y  S   P        +L +  Y     ++  +  +E  +  W +  D        
Sbjct: 59  LSYTYLCSLYHP------TSELQLLHYYVVTFWQGEIPAQEAAEVHWMTAND------IV 106

Query: 339 EYIKAQRTAAA 349
              +A R A  
Sbjct: 107 LASEADRLALW 117

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 117

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 227 LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           +VI  +   +LL R+ +     +    G IE GE+ EEA +RE  EE G++V
Sbjct: 5   IVIINDQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDV 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|240028 cd04671, Nudix_Hydrolase_13, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 224 VIMLVIDRENDRVLLSRQSRFVPR-MWSCIAGFIEPGESLEEAVRRETWEETGI 276
           ++  VI      VLL ++++   R  W   AG +EPGE++EEAV+RE  EETG+
Sbjct: 2   IVAAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGL 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 231 RENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
             + ++LL +++   +  R W    G IEPGES EEA+ RE  EETG+ V
Sbjct: 8   PRDGKLLLIQKNGGPYEGR-WDLPGGGIEPGESPEEALHREVLEETGLTV 56

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|240038 cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 246 PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP 290
           P  W    G  E GE+  E V RE  EE G+ + E    +  PW 
Sbjct: 28  PGHWDLPGGHREGGETPLECVLRELLEEIGLTLPE----SRIPWF 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|131752 TIGR02705, nudix_YtkD, nucleoside triphosphatase YtkD

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 227 LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283
           LVI R  D+ LL+   R   R      G +EPGE+ +EA  RE  EETG  V E+ Y
Sbjct: 28  LVIPRYKDQWLLTEHKR---RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHY 81

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference , both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it [DNA metabolism, DNA replication, recombination, and repair]. Length = 156

>gnl|CDD|204192 pfam09297, zf-NADH-PPase, NADH pyrophosphatase zinc ribbon domain

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKRIY 217
            RFCG CG  T P E G  + C   SC    Y
Sbjct: 3   HRFCGRCGAPTEPAEGGWARVC--PSCGHEHY 32

This domain is found in between two duplicated NUDIX domains. It has a zinc ribbon structure. Length = 32

>gnl|CDD|240052 cd04696, Nudix_Hydrolase_37, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 10/103 (9%)

Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 287
           +I   + R+LL R +++   +W    G +E GE+LEEA++RE  EETG+++ ++ +   Q
Sbjct: 8   LIYAPDGRILLVRTTKW-RGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQ 66

Query: 288 -----PWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARW 325
                     P      ++  F+A     E+    EE+ +  W
Sbjct: 67  EAIFSEEFHKPAHF---VLFDFFARTDGTEV-TPNEEIVEWEW 105

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|240050 cd04694, Nudix_Hydrolase_35, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 233 NDRVLLSRQS---RFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281
           + ++LL+R++   R  P +W    G +E GE+L EA  RE  EETG+ +  +
Sbjct: 12  DQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPI 63

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 143

>gnl|CDD|240024 cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 224 VIMLVIDRENDRVLL--SRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG 279
            I          VLL  SR++    VP+      G  E  ES  EA  RE WEE G+  G
Sbjct: 5   AIPYRETGGEVEVLLVTSRRTGRWIVPK------GGPEKDESPAEAAAREAWEEAGV-RG 57

Query: 280 EVV 282
           ++ 
Sbjct: 58  KIG 60

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|185369 PRK15472, PRK15472, nucleoside triphosphatase NudI; Provisional

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 15/99 (15%)

Query: 246 PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW-----------PVGPN 294
           P  W+   G +EPGE +EEA+RRE  EE G ++  ++   + PW             G  
Sbjct: 30  PGQWALSGGGVEPGERIEEALRREIREELGEQL--LLTEIT-PWTFRDDIRTKTYADGRK 86

Query: 295 SMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKK 333
                + + F   + + ++ ++ EE +D  W   ED+  
Sbjct: 87  EEIYMIYLIFDCVSANRDVKIN-EEFQDYAWVKPEDLVH 124

Length = 141

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 7/55 (12%)

Query: 227 LVIDRENDRV---LLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           ++  R N+ +   LL          W    G +EPGE   EA  RET EETGI  
Sbjct: 8   IIYRRLNNEIEYLLLQASYGH----WDFPKGHVEPGEDDLEAALRETEEETGITA 58

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 11/66 (16%)

Query: 224 VIMLVIDREND-RVLLSRQSRFVPRM------WSCIAGFIEPG-ESLEEAVRRETWEETG 275
           V++L+++RE + RVLL++++     +       +   G ++PG E       RE  EE G
Sbjct: 5   VLVLLVEREGELRVLLTKRAS---HLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIG 61

Query: 276 IEVGEV 281
           +    V
Sbjct: 62  LPPDSV 67

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules. Length = 157

>gnl|CDD|240029 cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 232 ENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           ++ ++LL R+      +WS   G+ + G S  E V +E  EETG++V
Sbjct: 11  KDGKILLVREKS--DGLWSLPGGWADVGLSPAENVVKEVKEETGLDV 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 227 LVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
            V+ R +D VLL R++   ++   W+  AG +E GE    A  RE  EE G+ +
Sbjct: 4   YVLLRRDDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTL 57

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|234820 PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 223 VVIMLVIDRENDRVLLSRQSRFVPRM-WSCIAGFIEPGESLEEAVRRETWEETGI 276
           V I+L ++R+  +V   R  R      W    G I+PGE+ E+A+ RE +EE G+
Sbjct: 11  VGIIL-LNRQG-QVFWGR--RIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGL 61

Length = 156

>gnl|CDD|240045 cd04689, Nudix_Hydrolase_30, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 10/55 (18%)

Query: 228 VIDRENDRVLLSRQ----SRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
            I R  ++VLL+R       F+P       G +EPGE+ E A+RRE  EE G+ V
Sbjct: 6   AIVRAGNKVLLARVIGQPHYFLP------GGHVEPGETAENALRRELQEELGVAV 54

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|240053 cd04697, Nudix_Hydrolase_38, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 244 FVPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV 302
           + P  W     G ++ GES  +  +RE  EE GI+  ++       +    N +  ++  
Sbjct: 25  WCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWGKVFS 84

Query: 303 GFYAYAKSFEINVDKEELEDARWHSREDVKK 333
             Y       + + +EE+E+  W S  ++ +
Sbjct: 85  CVY----DGPLKLQEEEVEEITWLSINEILQ 111

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|235436 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 16/81 (19%)

Query: 220 VDPVVIMLVIDRENDRVLL-SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           VD VV+       +  VLL  R++     +W+   GF+E  E+L +A  RE  EETG+++
Sbjct: 206 VDAVVVQ------SGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKL 259

Query: 279 GEVVYHTSQPWPVGPNSMPCQ 299
                    P PV   S+  Q
Sbjct: 260 ---------PEPVLRGSIRDQ 271

Length = 340

>gnl|CDD|240035 cd04679, Nudix_Hydrolase_20, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 227 LVIDRENDRVLLSRQSRFVPRM-WSCIAGFIEPGESLEEAVRRETWEETGIEV 278
             I R++ ++LL ++ R      W    G ++  E++E+AV RE  EETG+ +
Sbjct: 7   AAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSI 59

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|184971 PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 10/77 (12%)

Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVP--------RMWSCIAGFIEPGESLEE 264
           K+ +Y R +   I+L  + +   V+L RQ R           ++    AG ++  E  E 
Sbjct: 38  KREVYDRGNGATILLY-NAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDNDEP-EV 95

Query: 265 AVRRETWEETGIEVGEV 281
            +R+E  EETG EVGEV
Sbjct: 96  CIRKEAIEETGYEVGEV 112

Length = 191

>gnl|CDD|240043 cd04687, Nudix_Hydrolase_28, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 253 AGFIEPGESLEEAVRRETWEETGI--EVGEVVY 283
            G  EPGE+LE+A  RE  EE GI  E+G +++
Sbjct: 31  GGGQEPGETLEDAAHRECKEEIGIDVEIGPLLF 63

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|240055 cd04700, DR1025_like, DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 228 VIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283
           VI  E + VLL ++ +  P+  +W   +G +E GE  ++A  RE  EETG+ V  V +
Sbjct: 19  VILNERNDVLLVQE-KGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKF 75

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 142

>gnl|CDD|224360 COG1443, Idi, Isopentenyldiphosphate isomerase [Lipid metabolism]

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 20/119 (16%)

Query: 232 ENDRVLLSRQS---RFVPRMW--SCIAGFIEPGESLEEAVRRETWEETGIEVGE------ 280
           E  ++LL+R++   +  P +W  S       PGES E+A RR    E GIE  +      
Sbjct: 43  ERGQLLLTRRALSKKTWPGVWTNSV-CSHPLPGESNEDAARRRLAYELGIEPDQYDKLEI 101

Query: 281 ---VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALT 336
                Y  + P  +  N + C   V       + + N D  E+ D RW S ED+K+ + 
Sbjct: 102 LPRFRYRAADPDGIVENEI-CP--VLAARLDSALDPNPD--EVMDYRWVSPEDLKEMVD 155

Length = 185

>gnl|CDD|182721 PRK10776, PRK10776, nucleoside triphosphate pyrophosphohydrolase; Provisional

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 248 MWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
            W    G IE GE+ E+A+ RE  EE GI V
Sbjct: 32  KWEFPGGKIEAGETPEQALIRELQEEVGITV 62

Length = 129

>gnl|CDD|215184 PLN02325, PLN02325, nudix hydrolase

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 218 PRVDPVVIMLVIDRENDRVLLSRQ-SRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI 276
           PRV  VV +L    + + VLL R+ S      ++   G +E GES EE   RE  EETG+
Sbjct: 8   PRVAVVVFLL----KGNSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGL 63

Query: 277 EVGEVVYHT 285
           E+ ++   T
Sbjct: 64  EIEKIELLT 72

Length = 144

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	417
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	100.0
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	100.0
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	100.0
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.86
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.84
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.78
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.78
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.78
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.77
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.77
PLN02325	144	nudix hydrolase	99.76
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.75
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.75
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.75
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.75
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.74
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.74
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.74
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.74
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.74
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.73
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.73
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.73
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.73
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.72
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.72
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.72
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.71
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.71
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.71
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.71
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.71
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.7
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.7
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.7
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.7
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.69
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.69
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.69
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.69
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.69
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.68
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.68
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.67
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.67
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.67
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.67
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.66
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.65
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.64
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.63
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.62
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.62
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.62
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.61
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.61
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.61
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.6
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.6
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.59
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.59
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.59
PRK10707	190	putative NUDIX hydrolase; Provisional	99.58
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.58
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.57
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.56
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.55
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.53
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.5
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.5
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.49
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.48
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.47
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.44
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.44
PLN02709	222	nudix hydrolase	99.4
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.38
PRK08999	312	hypothetical protein; Provisional	99.35
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.23
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.19
PLN02791	770	Nudix hydrolase homolog	99.17
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.17
PLN03143	291	nudix hydrolase; Provisional	99.15
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	99.07
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	98.98
PF09296	98	NUDIX-like: NADH pyrophosphatase-like rudimentary	98.94
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	98.91
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	98.74
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	98.58
PF09297	32	zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do	98.52
PLN02839	372	nudix hydrolase	98.46
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.43
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.4
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	97.64
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	97.62
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	96.9
KOG4195	275	consensus Transient receptor potential-related cha	96.77
COG4112	203	Predicted phosphoesterase (MutT family) [General f	95.97
COG1998	51	RPS31 Ribosomal protein S27AE [Translation, riboso	95.78
PRK00432	50	30S ribosomal protein S27ae; Validated	95.65
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	95.61
smart00661	52	RPOL9 RNA polymerase subunit 9.	95.25
PF03119	28	DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc f	94.67
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	93.77
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	93.18
PF02150	35	RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; I	92.81
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	92.47
COG4111	322	Uncharacterized conserved protein [General functio	89.74
PF13248	26	zf-ribbon_3: zinc-ribbon domain	87.56
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	86.66
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	84.97
PF07282	69	OrfB_Zn_ribbon: Putative transposase DNA-binding d	83.62
COG1645	131	Uncharacterized Zn-finger containing protein [Gene	83.53
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	83.43
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	83.28
PF06677	41	Auto_anti-p27: Sjogren's syndrome/scleroderma auto	82.81
PF12773	50	DZR: Double zinc ribbon	82.15
PF12677	49	DUF3797: Domain of unknown function (DUF3797); Int	81.45
PRK10880	350	adenine DNA glycosylase; Provisional	81.31
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	81.12
PF09151	36	DUF1936: Domain of unknown function (DUF1936); Int	80.57
PRK13844	200	recombination protein RecR; Provisional	80.1

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=100.00  E-value=2.9e-52  Score=400.05  Aligned_cols=260  Identities=41%  Similarity=0.707  Sum_probs=215.8

Q ss_pred             CeEEEEEeCCceeeecCCCCCCCceeeccccchhhHHHhhhcCcCcccccEEEeeeeeCCCeeEEEEecCCCCccccccc
Q 014873           64 DFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFG  143 (417)
Q Consensus        64 ~~~~l~f~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Lg~~~~~~~~~~a~~~~~~~~~~~~~~  143 (417)
                      .+++++|+++++++..++.   |        +.....      ..+......++|..  ++.++|++.+......     
T Consensus        19 ~~~~~~~~~~~l~l~~~~~---p--------~~~~~~------~~l~~~~~~~~~~~--~~~~v~~~~l~~~~~~-----   74 (279)
T COG2816          19 STLWLVFSEGKLLLKDGEL---P--------FGAAEN------LDLVGEALLGIGEW--GGEPVFAVWLVEEIEL-----   74 (279)
T ss_pred             cceEEEEcCCcEEEecCCC---c--------cchhhc------CCchHHHhhhcccc--CCccceeeeccccccc-----
Confidence            7999999999999976432   1        111111      01123345667764  6678887755433321     


Q ss_pred             ccccchhhhHHHHhhcchhhhhhHHHHHHHHHHHHHHhhhhccCccccCCCcceeccCccceeecCCCCCCcccCCcCcE
Q 014873          144 SKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPV  223 (417)
Q Consensus       144 ~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pv  223 (417)
                      +.+..+++||+++..+      +...+.++++|.+|++|+++||||++||+++.+..+|++++|+  .|+..+|||++|+
T Consensus        75 ~~~~~~~~lR~l~~~~------~~~~~~~~~~a~~l~~w~~~~RFCg~CG~~~~~~~~g~~~~C~--~cg~~~fPR~dP~  146 (279)
T COG2816          75 PEPFELVDLRSLLTEL------DEGLFGLAARAVQLLEWYRSHRFCGRCGTKTYPREGGWARVCP--KCGHEHFPRIDPC  146 (279)
T ss_pred             CCccceeeHHHHhccC------CHHHHHHHHHHHHHHHHHhhCcCCCCCCCcCccccCceeeeCC--CCCCccCCCCCCe
Confidence            2467899999998643      4467899999999999999999999999999999999999998  5999999999999


Q ss_pred             EEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEE
Q 014873          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG  303 (417)
Q Consensus       224 Vivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~  303 (417)
                      |||+|++  ++++||.++.++++|+|++.+||||+|||+|+||+||++||+||+|++++|++|||||     +|+++|++
T Consensus       147 vIv~v~~--~~~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQPWP-----fP~SLMig  219 (279)
T COG2816         147 VIVAVIR--GDEILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQPWP-----FPHSLMLG  219 (279)
T ss_pred             EEEEEec--CCceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEeccCCC-----Cchhhhhh
Confidence            9999998  4569999999888999999999999999999999999999999999999999999999     59999999


Q ss_pred             EEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhccccccccccccccCCC-CCccCCc
Q 014873          304 FYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGEL-APIFIPG  382 (417)
Q Consensus       304 f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~~~~~~er~~~~~~~~k~~~~~~-~~~~lP~  382 (417)
                      |++.+.+++++.+..|+++++||+++|+..+|..+                                  +.. ..+..|+
T Consensus       220 f~aey~sgeI~~d~~Eleda~WFs~~evl~~L~~~----------------------------------~~~~~~li~~~  265 (279)
T COG2816         220 FMAEYDSGEITPDEGELEDARWFSRDEVLPALPPD----------------------------------GTIARRLIEPT  265 (279)
T ss_pred             heeeeccccccCCcchhhhccccCHhHHhhhcCCC----------------------------------CCcccccccch
Confidence            99999999999999999999999999977766531                                  111 2467799


Q ss_pred             cchHHHHHHHHHhc
Q 014873          383 PFAIAHHLISSWVY  396 (417)
Q Consensus       383 ~faIA~~Li~~w~~  396 (417)
                      ..+||++++++|..
T Consensus       266 ~~~ia~~~~~~~~~  279 (279)
T COG2816         266 LAAIARELIKAWAE  279 (279)
T ss_pred             HHHHHHHHHhhhcC
Confidence            99999999999963

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=100.00  E-value=1.5e-48  Score=374.86  Aligned_cols=222  Identities=53%  Similarity=0.893  Sum_probs=195.3

Q ss_pred             chhhhHHHHh-hcchhhhhhHHHH-HHHHHHHHHHhhhhccCccccCCCcceeccCccceeecCCCCC--CcccCCcCcE
Q 014873          148 CFVELRTVMV-ATDWADQRAMADL-AIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCK--KRIYPRVDPV  223 (417)
Q Consensus       148 ~~~~lr~~~~-~~~~~~~~~~~~~-~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~--~~~ypr~~pv  223 (417)
                      .|.++|..+. .++      ..++ +++++|+++++|++++||||.||+++.+..+|.+.+|.+..|.  ..+|||++|+
T Consensus       116 ~F~~~r~~~~~~~~------~~d~~~~~a~ars~l~W~skykFCp~CG~~tkp~e~g~k~~Cs~~~C~~~n~~yPr~dPv  189 (345)
T KOG3084|consen  116 SFVPLRMSMSLPGS------DEDARSLTAVARSLLDWVSKYKFCPGCGSPTKPEEAGTKLQCSDETCPSCNVIYPRTDPV  189 (345)
T ss_pred             eeccchhhccCCCC------hhhhhcHHHHHHHHHHHHHHhccCcccCCCcccccCCccceeecccCCcCCeeccCCCCe
Confidence            8999999883 322      2233 8999999999999999999999999999999999999977898  8999999999


Q ss_pred             EEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEE
Q 014873          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG  303 (417)
Q Consensus       224 Vivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~  303 (417)
                      ||++++++++.++||.|+.++++|+|++++||+|+|||+||||+||++||||++|+.|.|+.+||||.    +|+++|++
T Consensus       190 VIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP~----~p~SLMIg  265 (345)
T KOG3084|consen  190 VIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWPL----MPQSLMIG  265 (345)
T ss_pred             EEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecCCCCC----CchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999994    58899999


Q ss_pred             EEEEEec-ccccCCcc-cccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhccccccccccccccCCCCCccCC
Q 014873          304 FYAYAKS-FEINVDKE-ELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIP  381 (417)
Q Consensus       304 f~a~~~~-~~~~~~~~-E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~~~~~~er~~~~~~~~k~~~~~~~~~~lP  381 (417)
                      +++.+.. .++.++.+ |+++++||+++++.+.|..                  +|..|.+..          -+++++|
T Consensus       266 c~ala~~~~~I~vd~dlEleDaqwF~r~ev~~aL~~------------------kg~~Rv~~~----------~a~i~~P  317 (345)
T KOG3084|consen  266 CLALAKLNGKISVDKDLELEDAQWFDREEVKSALTT------------------KGLVRVQIE----------KALILIP  317 (345)
T ss_pred             HHHHHhhCCccccCcchhhhhcccccHHHHHHHHHh------------------cCCcccccc----------CcceecC
Confidence            9988765 78888877 9999999999999997763                  244433320          1468999


Q ss_pred             ccchHHHHHHHHHhcCcCCCCCcccc
Q 014873          382 GPFAIAHHLISSWVYKDAPDGVQVQT  407 (417)
Q Consensus       382 ~~faIA~~Li~~w~~~~~~~~~~~~~  407 (417)
                      ++|||||+||.+|++...++.+...+
T Consensus       318 ~~~aIA~qLI~~~~~~~~~~~~~~~~  343 (345)
T KOG3084|consen  318 PPFAIAHQLILHWVGFVPNNLGSSEK  343 (345)
T ss_pred             ChhHHHHHHHHHHHccchhhhcchhh
Confidence            99999999999999988887766543

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=100.00  E-value=5.3e-44  Score=345.85  Aligned_cols=244  Identities=30%  Similarity=0.501  Sum_probs=202.7

Q ss_pred             CeEEEEEeCCceeeecCCCCCCCceeeccccchhhHHHhhhcCcCcccccEEEeeeeeCCCeeEEEEecCCCCccccccc
Q 014873           64 DFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFG  143 (417)
Q Consensus        64 ~~~~l~f~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Lg~~~~~~~~~~a~~~~~~~~~~~~~~  143 (417)
                      ...+++|.+++.++... .       +...+....         .......+|||..  ++.++|+++++..        
T Consensus        12 ~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~---------~~~~~~~~~lg~~--~~~~~~~~~~~~~--------   64 (256)
T PRK00241         12 AGWWVVSHEQQLWLPDG-E-------LPFGAAANL---------DLPGLRALQIGEW--QGEPVWLVRQDPL--------   64 (256)
T ss_pred             CcEEEEEeCCeEEEccC-C-------CCCcccccc---------CCCccceEEEEee--CCEEEEEEEcCcc--------
Confidence            45688898988887431 1       111111111         0123567999986  6789999987532        


Q ss_pred             ccccchhhhHHHHhhcchhhhhhHHHHHHHHHHHHHHhhhhccCccccCCCcceeccCccceeecCCCCCCcccCCcCcE
Q 014873          144 SKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPV  223 (417)
Q Consensus       144 ~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pv  223 (417)
                       .+..|.+||++ ..+      ++.+++++++|++|++||++|+|||+||+++....+++++.|+  +|+..+||+++|+
T Consensus        65 -~~~~~~~lr~~-~~~------~~~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~C~--~c~~~~yp~~~pa  134 (256)
T PRK00241         65 -RGHEMGSLRQL-LDL------DDGLFQLLGRAVQLAEFYRSHRFCGYCGHPMHPSKTEWAMLCP--HCRERYYPRIAPC  134 (256)
T ss_pred             -ccccchhhhhh-ccC------CHHHHHHHHHHHHHHHHhhcCccccccCCCCeecCCceeEECC--CCCCEECCCCCCE
Confidence             14678899998 332      4578999999999999999999999999999999999999997  6999999999999


Q ss_pred             EEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEE
Q 014873          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG  303 (417)
Q Consensus       224 Vivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~  303 (417)
                      |+++|.+  +++|||+|+.+++.|.|++||||||+|||+++||+||++||||+++..++|+++++|++     +.++|++
T Consensus       135 Viv~V~~--~~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~~~-----p~~lm~~  207 (256)
T PRK00241        135 IIVAVRR--GDEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQPWPF-----PHSLMLG  207 (256)
T ss_pred             EEEEEEe--CCEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEeecC-----CCeEEEE
Confidence            9988765  58999999988778999999999999999999999999999999999999999999974     6789999


Q ss_pred             EEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhccccccccccccccCCCCCccCCcc
Q 014873          304 FYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGP  383 (417)
Q Consensus       304 f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~~~~~~er~~~~~~~~k~~~~~~~~~~lP~~  383 (417)
                      |.+.+..+++..+++|+.+++||++++++.                                              +|..
T Consensus       208 f~a~~~~~~~~~~~~Ei~~a~W~~~del~~----------------------------------------------lp~~  241 (256)
T PRK00241        208 FHADYDSGEIVFDPKEIADAQWFRYDELPL----------------------------------------------LPPS  241 (256)
T ss_pred             EEEEecCCcccCCcccEEEEEEECHHHCcc----------------------------------------------cCCc
Confidence            999987777777888999999999998653                                              5788


Q ss_pred             chHHHHHHHHHhcC
Q 014873          384 FAIAHHLISSWVYK  397 (417)
Q Consensus       384 faIA~~Li~~w~~~  397 (417)
                      .+||++||+.|+..
T Consensus       242 ~sia~~li~~~~~~  255 (256)
T PRK00241        242 GTIARRLIEDTVAL  255 (256)
T ss_pred             hHHHHHHHHHHHHh
Confidence            89999999999863

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.86  E-value=5.9e-21  Score=166.76  Aligned_cols=130  Identities=58%  Similarity=0.910  Sum_probs=107.4

Q ss_pred             cEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEE
Q 014873          222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLM  301 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~  301 (417)
                      |+|++++++. +++|||+||.+++.|.|++|||+++.|||+++||+||++||||+.+..+.+++...|.+     +..++
T Consensus         1 ~~v~i~l~~~-~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~~-----~~~~~   74 (131)
T cd03429           1 PAVIVLVIDG-GDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWPF-----PSSLM   74 (131)
T ss_pred             CeEEEEEEeC-CCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCCC-----CceEE
Confidence            4667777664 58999999987668999999999999999999999999999999998888888776653     35677


Q ss_pred             EEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhccccccccccccccCCCCCccCC
Q 014873          302 VGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIP  381 (417)
Q Consensus       302 i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~~~~~~er~~~~~~~~k~~~~~~~~~~lP  381 (417)
                      ++|++.....+...+++|+.+++|++++++.++ .                                      .....+|
T Consensus        75 ~~f~~~~~~~~~~~~~~E~~~~~w~~~~el~~~-~--------------------------------------~~~~~~~  115 (131)
T cd03429          75 LGFTAEADSGEIVVDDDELEDARWFSRDEVRAA-G--------------------------------------EGLPELP  115 (131)
T ss_pred             EEEEEEEcCCcccCCchhhhccEeecHHHHhhc-c--------------------------------------cCCccCC
Confidence            888888776666667789999999999999974 1                                      0123579


Q ss_pred             ccchHHHHHHHHHhc
Q 014873          382 GPFAIAHHLISSWVY  396 (417)
Q Consensus       382 ~~faIA~~Li~~w~~  396 (417)
                      ++.++++.+++.|+.
T Consensus       116 ~~~~~~~~~~~~~~~  130 (131)
T cd03429         116 PPGSIARQLIEAWLE  130 (131)
T ss_pred             CcchHHHHHHHHHhc
Confidence            999999999999983

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=2.6e-20  Score=162.07  Aligned_cols=122  Identities=26%  Similarity=0.363  Sum_probs=96.8

Q ss_pred             ecCCCCCCcccCCcCcEEEEEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEE
Q 014873          207 CSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT  285 (417)
Q Consensus       207 C~~~~C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~  285 (417)
                      |+  .|+.++|+++..+|.+++++  +++|||+||.. ...|.|++|||+||+||++++|++||++||||+++....+++
T Consensus         1 c~--~~~~~~~~~~~~~v~~ii~~--~~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~   76 (130)
T cd04511           1 CP--DCGYIHYQNPKIIVGCVPEW--EGKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYA   76 (130)
T ss_pred             CC--CCccccCCCCcEEEEEEEec--CCEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEE
Confidence            76  79999999888777776665  58999999875 346899999999999999999999999999999987666666


Q ss_pred             EeecCCCCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHH-Hhhhh
Q 014873          286 SQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKK-ALTFA  338 (417)
Q Consensus       286 s~~~~~~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~-~L~~~  338 (417)
                      ....+     ....+++.|.+......+.. ..|..+++|+++++++. .|++.
T Consensus        77 ~~~~~-----~~~~~~~~f~~~~~~~~~~~-~~e~~~~~~~~~~~l~~~~l~~~  124 (130)
T cd04511          77 VYSVP-----HISQVYMFYRARLLDLDFAP-GPESLEVRLFTEEEIPWDELAFP  124 (130)
T ss_pred             EEecC-----CceEEEEEEEEEEcCCcccC-CcchhceEEECHHHCCchhcccc
Confidence            55543     13467888888876655443 46888999999999973 45554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.78  E-value=2.2e-18  Score=152.63  Aligned_cols=125  Identities=21%  Similarity=0.248  Sum_probs=94.2

Q ss_pred             CcccCCcCcEEEEEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC
Q 014873          214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG  292 (417)
Q Consensus       214 ~~~ypr~~pvVivlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~  292 (417)
                      +-+||++.++|.++|++. +++|||+++.. +.++.|++|||+|++|||+++||+||++||||+++..+.+++...+.+.
T Consensus         6 ~~~~~~~~~av~~vv~~~-~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~   84 (142)
T cd04700           6 RHHVEVEARAAGAVILNE-RNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFD   84 (142)
T ss_pred             ccCcceeeeeEEEEEEeC-CCcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcC
Confidence            458999999999988875 57899988764 3468999999999999999999999999999999987777766544332


Q ss_pred             CCCCCcEEEEEEEEEEeccccc-CCcccccceEEEehhhHHHHhhhhhHH
Q 014873          293 PNSMPCQLMVGFYAYAKSFEIN-VDKEELEDARWHSREDVKKALTFAEYI  341 (417)
Q Consensus       293 ~~~~p~~l~i~f~a~~~~~~~~-~~~~E~~~a~Wf~~del~~~L~~~~~~  341 (417)
                      ..  ...+.+.|++........ ...+|+.+++||+++++.+++..+.+.
T Consensus        85 ~~--~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~i~  132 (142)
T cd04700          85 DG--VLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQGQLR  132 (142)
T ss_pred             CC--cEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhcccccccc
Confidence            11  123344565655433222 234799999999999999987765543

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=2.1e-18  Score=149.22  Aligned_cols=122  Identities=27%  Similarity=0.404  Sum_probs=90.3

Q ss_pred             EEEEEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC-cEE
Q 014873          223 VVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP-CQL  300 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p-~~l  300 (417)
                      +|.+++++. +++|||++|.+ ..+|.|.+|||++|.|||+++||.||++||||+++..+.++++.+..+...... ..+
T Consensus         3 av~~~i~~~-~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (130)
T cd04681           3 AVGVLILNE-DGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDTL   81 (130)
T ss_pred             eEEEEEEcC-CCcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEEE
Confidence            455666664 57999999875 346899999999999999999999999999999998888887765433211122 233


Q ss_pred             EEEEEEEEecccccCCcccccceEEEehhhHH-HHhhhhhHHHHHH
Q 014873          301 MVGFYAYAKSFEINVDKEELEDARWHSREDVK-KALTFAEYIKAQR  345 (417)
Q Consensus       301 ~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~-~~L~~~~~~~a~~  345 (417)
                      .+.|.+.........+.+|+.+++|+++++++ ..+.+++.+.+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~  127 (130)
T cd04681          82 DLFFVCQVDDKPIVKAPDDVAELKWVVPQDIELENFAFPSIRQAVE  127 (130)
T ss_pred             EEEEEEEeCCCCCcCChHHhheeEEecHHHCCcccCCcHHHHHHHH
Confidence            44556666554455566899999999999996 4577777665544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.78  E-value=3.5e-18  Score=146.59  Aligned_cols=117  Identities=25%  Similarity=0.255  Sum_probs=87.3

Q ss_pred             EEEEEEEecCCCEEEEEEecCC-CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC-CCC--CCc
Q 014873          223 VVIMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG-PNS--MPC  298 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~~-~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~-~~~--~p~  298 (417)
                      ++.++|++  +++|||+||.+. .+|.|.+|||+||+|||+++||+||++||||+++..+.+++...+.+. +..  ...
T Consensus         2 ~~~~ii~~--~~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   79 (128)
T cd04684           2 GAYAVIPR--DGKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDAH   79 (128)
T ss_pred             eeEEEEEe--CCEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeecc
Confidence            45666666  489999999863 468999999999999999999999999999999887777766544322 111  124


Q ss_pred             EEEEEEEEEEecccc--cCCcccccceEEEehhhHHHHhhhhhHH
Q 014873          299 QLMVGFYAYAKSFEI--NVDKEELEDARWHSREDVKKALTFAEYI  341 (417)
Q Consensus       299 ~l~i~f~a~~~~~~~--~~~~~E~~~a~Wf~~del~~~L~~~~~~  341 (417)
                      .+.+.|.+.......  ....+|..+++|++++++.+.+..+...
T Consensus        80 ~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~  124 (128)
T cd04684          80 HLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLLSPLVL  124 (128)
T ss_pred             EEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhccCCCHHHH
Confidence            566667776655443  3455788999999999999766555443

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=5.6e-18  Score=145.83  Aligned_cols=114  Identities=19%  Similarity=0.196  Sum_probs=85.5

Q ss_pred             cEEEEEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEE
Q 014873          222 PVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL  300 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l  300 (417)
                      +.|.++|++. +++|||++|.+ ..+|.|++|||++|+|||+++||+||++||||+++....+++...+.+... ....+
T Consensus         3 ~~~~~~i~~~-~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~-~~~~~   80 (125)
T cd04679           3 VGCGAAILRD-DGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEP-PQHWV   80 (125)
T ss_pred             eEEEEEEECC-CCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCC-CCeEE
Confidence            3455556664 58999999975 446899999999999999999999999999999998777776655433221 12456


Q ss_pred             EEEEEEEEecccc-cCCcccccceEEEehhhHHHHhhh
Q 014873          301 MVGFYAYAKSFEI-NVDKEELEDARWHSREDVKKALTF  337 (417)
Q Consensus       301 ~i~f~a~~~~~~~-~~~~~E~~~a~Wf~~del~~~L~~  337 (417)
                      ++.|.+....... ..+++|+.+++||+++++++.|..
T Consensus        81 ~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~~  118 (125)
T cd04679          81 APVYLAENFSGEPRLMEPDKLLELGWFALDALPQPLTR  118 (125)
T ss_pred             EEEEEEeecCCccccCCCccccEEEEeCHHHCCchhHH
Confidence            6677776654433 235578999999999999986653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.77  E-value=5.1e-18  Score=146.14  Aligned_cols=112  Identities=26%  Similarity=0.297  Sum_probs=86.8

Q ss_pred             CEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCC-CCCcEEEEEEEEEEeccc
Q 014873          234 DRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPN-SMPCQLMVGFYAYAKSFE  312 (417)
Q Consensus       234 ~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~-~~p~~l~i~f~a~~~~~~  312 (417)
                      ++|||+||.+.  +.|.+|||++++|||+++||.||++||||+++..+.+++.+.+++... ......+..|.+......
T Consensus        16 ~~vLl~~~~~~--~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (131)
T cd03673          16 IEVLLIHRPRG--DDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKRVHKTVHWWLMRALGGE   93 (131)
T ss_pred             eEEEEEEcCCC--CcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCCCcceEEEEEEEEEcCCC
Confidence            79999999753  799999999999999999999999999999998777777766654321 112344455555555444


Q ss_pred             ccC-CcccccceEEEehhhHHHHhhhhhHHHHHHHH
Q 014873          313 INV-DKEELEDARWHSREDVKKALTFAEYIKAQRTA  347 (417)
Q Consensus       313 ~~~-~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a  347 (417)
                      ... +++|+.+++|++++++.+++.+++.+.++..+
T Consensus        94 ~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~  129 (131)
T cd03673          94 FTPQPDEEVDEVRWLPPDEARDRLSYPNDRELLRAA  129 (131)
T ss_pred             cccCCCCcEEEEEEcCHHHHHHHcCCHhHHHHHHHh
Confidence            443 56899999999999999999988877765543

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>PLN02325 nudix hydrolase

Probab=99.76  E-value=1.5e-17  Score=147.82  Aligned_cols=121  Identities=23%  Similarity=0.289  Sum_probs=87.0

Q ss_pred             cccCCcCcEEEEEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC
Q 014873          215 RIYPRVDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP  293 (417)
Q Consensus       215 ~~ypr~~pvVivlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~  293 (417)
                      ..||++...|.+++++  +++|||+||.. +..|.|.+|||+||.|||+++||+||++||||+++..+.+++.....+..
T Consensus         3 ~~~~~p~~~v~~vi~~--~~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~   80 (144)
T PLN02325          3 TGEPIPRVAVVVFLLK--GNSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLE   80 (144)
T ss_pred             CCCCCCeEEEEEEEEc--CCEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeec
Confidence            3567777777777766  47999999985 34579999999999999999999999999999999887777665433221


Q ss_pred             CCCC-cEEEEEEEEEEeccc---ccCCcccccceEEEehhhHHHHhhh
Q 014873          294 NSMP-CQLMVGFYAYAKSFE---INVDKEELEDARWHSREDVKKALTF  337 (417)
Q Consensus       294 ~~~p-~~l~i~f~a~~~~~~---~~~~~~E~~~a~Wf~~del~~~L~~  337 (417)
                      .... +.+.+.|.+......   ...+++|+.+++||++++++..+.+
T Consensus        81 ~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~~~  128 (144)
T PLN02325         81 EPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPLFW  128 (144)
T ss_pred             CCCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChhhhH
Confidence            1112 234455555543332   1234466788999999999985443

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.9e-17  Score=145.62  Aligned_cols=110  Identities=26%  Similarity=0.359  Sum_probs=79.0

Q ss_pred             EEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEE-----EeecCCCC-CC-
Q 014873          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT-----SQPWPVGP-NS-  295 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~-----s~~~~~~~-~~-  295 (417)
                      .+.+++++.++++|||+||.+  .|.|.+|||+||+|||+++||+||++||||+++..+....     .+.+.++. .+ 
T Consensus         4 ~~~~~v~~~~~~~vLLv~r~~--~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (138)
T cd03674           4 TASAFVVNPDRGKVLLTHHRK--LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHPKRG   81 (138)
T ss_pred             EEEEEEEeCCCCeEEEEEEcC--CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCCCCCC
Confidence            344556665338999999875  5899999999999999999999999999999876655432     22222221 11 


Q ss_pred             --CCcEEEEEEEEEEecccccC-CcccccceEEEehhhHHHH
Q 014873          296 --MPCQLMVGFYAYAKSFEINV-DKEELEDARWHSREDVKKA  334 (417)
Q Consensus       296 --~p~~l~i~f~a~~~~~~~~~-~~~E~~~a~Wf~~del~~~  334 (417)
                        ....+++.|++....+.... +++|..+++||+++++..+
T Consensus        82 ~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  123 (138)
T cd03674          82 VPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASL  123 (138)
T ss_pred             CCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhc
Confidence              12345667777765545443 6689999999999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.75  E-value=1.5e-17  Score=147.81  Aligned_cols=111  Identities=18%  Similarity=0.260  Sum_probs=81.5

Q ss_pred             EEEEEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccE--EEEEEeecCC-----CCC
Q 014873          223 VVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV--VYHTSQPWPV-----GPN  294 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v--~~~~s~~~~~-----~~~  294 (417)
                      +|.++|++. +++|||+||.+ +.+|+|.+|||+||+|||+++|++||++||||+++...  ++++.....+     ...
T Consensus        14 ~v~~vI~~~-~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~~~~~   92 (144)
T cd03430          14 SIDLIVENE-DGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNFFGDD   92 (144)
T ss_pred             EEEEEEEeC-CCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEeccccccCC
Confidence            455555553 68999999875 45789999999999999999999999999999988644  5544432211     111


Q ss_pred             CCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHH
Q 014873          295 SMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKA  334 (417)
Q Consensus       295 ~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~  334 (417)
                      ...+.+.+.|.+....+.+...++|+.+++||++++++++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~  132 (144)
T cd03430          93 FSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLAD  132 (144)
T ss_pred             CccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhcC
Confidence            1123566667776655555556789999999999999863

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.75  E-value=1e-17  Score=149.41  Aligned_cols=117  Identities=27%  Similarity=0.357  Sum_probs=88.5

Q ss_pred             CcccCCcCcEEEEEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC
Q 014873          214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG  292 (417)
Q Consensus       214 ~~~ypr~~pvVivlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~  292 (417)
                      ...|+.+.++|.+++..  +++|||+||.+ +..|.|++||||||.|||+++||+||++||||+++..++.++.+..+..
T Consensus         3 ~~~~~~p~~~v~~~i~~--~~~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~r   80 (145)
T COG1051           3 AMGYRTPLVAVGALIVR--NGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGR   80 (145)
T ss_pred             cccCCCcceeeeEEEEe--CCEEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCC
Confidence            45677777777777666  45999999997 5578999999999999999999999999999999888887777655532


Q ss_pred             CCCCCcEEEEEEEEEEecccc-cCCcccccceEEEehhhHHH
Q 014873          293 PNSMPCQLMVGFYAYAKSFEI-NVDKEELEDARWHSREDVKK  333 (417)
Q Consensus       293 ~~~~p~~l~i~f~a~~~~~~~-~~~~~E~~~a~Wf~~del~~  333 (417)
                      .- -.+++.+.|++....++. ..+.++...+.||++++++.
T Consensus        81 d~-r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~  121 (145)
T COG1051          81 DP-RGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPE  121 (145)
T ss_pred             CC-ceeEEEEEEEEEecCCCcccCChhhHhhcceecHhHccc
Confidence            11 123555556655544433 33345888999999999996

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.2e-17  Score=142.03  Aligned_cols=110  Identities=26%  Similarity=0.300  Sum_probs=84.3

Q ss_pred             EEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeec-cEEEEEEeecCCCCCCCCcEEE
Q 014873          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG-EVVYHTSQPWPVGPNSMPCQLM  301 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~-~v~~~~s~~~~~~~~~~p~~l~  301 (417)
                      .|.+++++. +++|||+||..  .+.|.+|||++++|||+++||+||++||||+.+. .+..++...+.+.   .....+
T Consensus         2 ~~~~~i~~~-~~~vLL~~r~~--~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~---~~~~~~   75 (120)
T cd04680           2 GARAVVTDA-DGRVLLVRHTY--GPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSAS---GSWDHV   75 (120)
T ss_pred             ceEEEEECC-CCeEEEEEECC--CCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCC---CCceEE
Confidence            345566664 67999999874  3489999999999999999999999999999998 7777766554432   123456


Q ss_pred             EEEEEEEecccccCCcccccceEEEehhhHHHHhhhh
Q 014873          302 VGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFA  338 (417)
Q Consensus       302 i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~  338 (417)
                      +.|.+.........+.+|+.+++||+++++++++..+
T Consensus        76 ~~f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~~~~~~  112 (120)
T cd04680          76 IVFRARADTQPVIRPSHEISEARFFPPDALPEPTTPA  112 (120)
T ss_pred             EEEEecccCCCccCCcccEEEEEEECHHHCcccCChH
Confidence            6777766554445567899999999999999866543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=2.1e-17  Score=141.03  Aligned_cols=109  Identities=23%  Similarity=0.369  Sum_probs=80.0

Q ss_pred             EEEEEEEecCCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeec--cEEEEEEeecCCCCCCCCc
Q 014873          223 VVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG--EVVYHTSQPWPVGPNSMPC  298 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~--~v~~~~s~~~~~~~~~~p~  298 (417)
                      +|.+++++  +++|||+||.+  ..+|.|++|||+|++|||+++||+||++||||+.+.  .+.+++...+....  ...
T Consensus         2 ~v~~vi~~--~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~--~~~   77 (120)
T cd04683           2 AVYVLLRR--DDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTED--IES   77 (120)
T ss_pred             cEEEEEEE--CCEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCC--Cce
Confidence            45555655  58999999875  347899999999999999999999999999999986  66676665443221  123


Q ss_pred             EEEEEEEEEEecccc-cCCcccccceEEEehhhHHHHh
Q 014873          299 QLMVGFYAYAKSFEI-NVDKEELEDARWHSREDVKKAL  335 (417)
Q Consensus       299 ~l~i~f~a~~~~~~~-~~~~~E~~~a~Wf~~del~~~L  335 (417)
                      .+++.|.+....+.. ..+++|+.+++|++++++++.+
T Consensus        78 ~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~  115 (120)
T cd04683          78 RIGLFFTVRRWSGEPRNCEPDKCAELRWFPLDALPDDT  115 (120)
T ss_pred             EEEEEEEEEeecCccccCCCCcEeeEEEEchHHCcchh
Confidence            455555554433333 2345788999999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=2.5e-17  Score=142.53  Aligned_cols=111  Identities=26%  Similarity=0.280  Sum_probs=81.9

Q ss_pred             CCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEee-cCC-C-CCCCCcEEEEEEEEEEe
Q 014873          233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQP-WPV-G-PNSMPCQLMVGFYAYAK  309 (417)
Q Consensus       233 ~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~-~~~-~-~~~~p~~l~i~f~a~~~  309 (417)
                      +++|||+||.+..+|.|.+|||+++.|||+++||.||++||||+.+..+.++.... +.+ . ........++.|.+...
T Consensus        14 ~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~   93 (129)
T cd04664          14 EGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDNGRVWTEHPFAFHLP   93 (129)
T ss_pred             CCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCCceEEEEeEEEEEcC
Confidence            68999999986567999999999999999999999999999999986666554432 111 1 11112245556666655


Q ss_pred             cccccCCcccccceEEEehhhHHHHhhhhhHHHH
Q 014873          310 SFEINVDKEELEDARWHSREDVKKALTFAEYIKA  343 (417)
Q Consensus       310 ~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a  343 (417)
                      .......++|+.+++|++++++.+++.+++.+++
T Consensus        94 ~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~  127 (129)
T cd04664          94 SDAVVTLDWEHDAFEWVPPEEAAALLLWESNRRA  127 (129)
T ss_pred             CCCcccCCccccccEecCHHHHHHHHcChhhhhh
Confidence            4432334578999999999999999888776554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=2.9e-17  Score=141.54  Aligned_cols=109  Identities=27%  Similarity=0.435  Sum_probs=80.2

Q ss_pred             cEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC--CCCCCcE
Q 014873          222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG--PNSMPCQ  299 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~--~~~~p~~  299 (417)
                      ++|.++|++. +++|||+||.+ .+|.|++|||++++|||+++||+||++||||+++..+.++....+.+.  .......
T Consensus         3 ~~v~~~i~~~-~~~iLL~r~~~-~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04696           3 VTVGALIYAP-DGRILLVRTTK-WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPAHF   80 (125)
T ss_pred             cEEEEEEECC-CCCEEEEEccC-CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCccEE
Confidence            4555566654 67999998764 468999999999999999999999999999999876665544322221  1112345


Q ss_pred             EEEEEEEEEecccccCCcccccceEEEehhhHHH
Q 014873          300 LMVGFYAYAKSFEINVDKEELEDARWHSREDVKK  333 (417)
Q Consensus       300 l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~  333 (417)
                      +++.|++......+.. .+|+.+++||+++++.+
T Consensus        81 ~~~~~~~~~~~~~~~~-~~e~~~~~W~~~~el~~  113 (125)
T cd04696          81 VLFDFFARTDGTEVTP-NEEIVEWEWVTPEEALD  113 (125)
T ss_pred             EEEEEEEEecCCcccC-CcccceeEEECHHHHhc
Confidence            6667777765444443 47899999999999987

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=4e-17  Score=139.65  Aligned_cols=104  Identities=32%  Similarity=0.385  Sum_probs=78.5

Q ss_pred             EEEEEEecCCCEEEEEEecC---CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEE
Q 014873          224 VIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL  300 (417)
Q Consensus       224 Vivlvi~~~~~kVLL~rr~~---~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l  300 (417)
                      |++++++  +++|||+||.+   +.+|.|++|||+||+|||+++||+||++||||+++..+.++..+..+.+    ....
T Consensus         3 v~~vi~~--~~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~----~~~~   76 (117)
T cd04691           3 VVGVLFS--DDKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTS----ELQL   76 (117)
T ss_pred             EEEEEEE--CCEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCC----CeEE
Confidence            4455555  48999999975   3678999999999999999999999999999999877777777655432    1233


Q ss_pred             EEEEEEEEecccccCCcccccceEEEehhhHHHHh
Q 014873          301 MVGFYAYAKSFEINVDKEELEDARWHSREDVKKAL  335 (417)
Q Consensus       301 ~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L  335 (417)
                      +..|.+....+.+  ..+|..+++||++++++...
T Consensus        77 ~~~~~~~~~~~~~--~~~E~~~~~W~~~~~l~~~~  109 (117)
T cd04691          77 LHYYVVTFWQGEI--PAQEAAEVHWMTANDIVLAS  109 (117)
T ss_pred             EEEEEEEEecCCC--CcccccccEEcCHHHcchhh
Confidence            4444544433333  34799999999999999743

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.74  E-value=4e-17  Score=147.68  Aligned_cols=113  Identities=17%  Similarity=0.252  Sum_probs=80.9

Q ss_pred             EEEEEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeec--cEEEEEEeecCCC--C-CC-
Q 014873          223 VVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG--EVVYHTSQPWPVG--P-NS-  295 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~--~v~~~~s~~~~~~--~-~~-  295 (417)
                      +|.++|++ +.++|||+||.. +.+|.|++|||+||+|||+++||+||++||||+++.  ...+++.....+.  . .. 
T Consensus        19 ~v~~vI~~-~~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~   97 (159)
T PRK15434         19 SLDFIVEN-SRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTD   97 (159)
T ss_pred             EEEEEEEC-CCCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccccCCCc
Confidence            44444444 468999999874 456899999999999999999999999999999863  2233332211111  1 11 


Q ss_pred             -CCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhh
Q 014873          296 -MPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALT  336 (417)
Q Consensus       296 -~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~  336 (417)
                       ....+++.|.+....++..+.++|+.+++||+++++++...
T Consensus        98 ~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~~~  139 (159)
T PRK15434         98 FTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLASDN  139 (159)
T ss_pred             cceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhccc
Confidence             11356667777766666666778999999999999998533

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.73  E-value=9.6e-17  Score=139.66  Aligned_cols=102  Identities=27%  Similarity=0.294  Sum_probs=78.1

Q ss_pred             CCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEeccc
Q 014873          233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFE  312 (417)
Q Consensus       233 ~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~~~  312 (417)
                      ++++||+||.+..++.|.+|||++|+|||+++||.||++||||+++....+++...+..... ....+++.|.+.+....
T Consensus        10 ~~~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~   88 (134)
T cd03675          10 DGRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDS-DTTYLRFAFAAELLEHL   88 (134)
T ss_pred             CCEEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCC-CeeEEEEEEEEEECCCC
Confidence            68999999987667899999999999999999999999999999987766666554433221 12335566777665443


Q ss_pred             cc-CCcccccceEEEehhhHHHHh
Q 014873          313 IN-VDKEELEDARWHSREDVKKAL  335 (417)
Q Consensus       313 ~~-~~~~E~~~a~Wf~~del~~~L  335 (417)
                      .. ..++|+.++.||+++++.++.
T Consensus        89 ~~~~~~~e~~~~~w~~~~el~~~~  112 (134)
T cd03675          89 PDQPLDSGIVRAHWLTLEEILALA  112 (134)
T ss_pred             CCCCCCCCceeeEEEeHHHHHhhh
Confidence            32 234688999999999999864

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=4.6e-17  Score=140.74  Aligned_cols=110  Identities=25%  Similarity=0.320  Sum_probs=82.0

Q ss_pred             cEEEEEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEE
Q 014873          222 PVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL  300 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l  300 (417)
                      .+|.+++++. +++|||+||.. +..+.|.+|||+|++|||+++||+||++||||+++..+.+++.....+ .....+.+
T Consensus         3 ~~v~~ii~~~-~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~-~~~~~~~~   80 (129)
T cd04678           3 VGVGVFVLNP-KGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVF-EEEGKHYV   80 (129)
T ss_pred             eEEEEEEECC-CCeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEe-CCCCcEEE
Confidence            3455556664 58999999885 457899999999999999999999999999999988777766543322 11123456


Q ss_pred             EEEEEEEEecccccC---CcccccceEEEehhhHHH
Q 014873          301 MVGFYAYAKSFEINV---DKEELEDARWHSREDVKK  333 (417)
Q Consensus       301 ~i~f~a~~~~~~~~~---~~~E~~~a~Wf~~del~~  333 (417)
                      .+.|.+.........   +.+|+.+++|++++++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~  116 (129)
T cd04678          81 TIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPS  116 (129)
T ss_pred             EEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCC
Confidence            667767665443332   457888999999999987

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=3.7e-17  Score=141.42  Aligned_cols=115  Identities=23%  Similarity=0.258  Sum_probs=81.5

Q ss_pred             CcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecC--C--CCC
Q 014873          219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP--V--GPN  294 (417)
Q Consensus       219 r~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~--~--~~~  294 (417)
                      .+.+++.+++++. +++|||++|...  +.|++|||+|++|||+++||.||++||||+++..+..++...+.  +  ...
T Consensus         5 ~~~~~~~~~v~~~-~~~vLL~~r~~~--~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~   81 (132)
T cd04677           5 LILVGAGVILLNE-QGEVLLQKRSDT--GDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPNG   81 (132)
T ss_pred             ccccceEEEEEeC-CCCEEEEEecCC--CcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCCC
Confidence            3456677777775 579999998753  78999999999999999999999999999999877666543221  1  011


Q ss_pred             CCCc-EEEEEEEEEEecccccCCcccccceEEEehhhHHHHhh
Q 014873          295 SMPC-QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALT  336 (417)
Q Consensus       295 ~~p~-~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~  336 (417)
                      .... ..++.|.+......+..+.+|..+++||+++++++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~  124 (132)
T cd04677          82 DDEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELIN  124 (132)
T ss_pred             CcEEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccchh
Confidence            1112 33333434333344455678999999999999988554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=5.2e-17  Score=138.32  Aligned_cols=109  Identities=28%  Similarity=0.313  Sum_probs=80.4

Q ss_pred             EEEEEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC---CCCCc
Q 014873          223 VVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP---NSMPC  298 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~---~~~p~  298 (417)
                      +|.+++++  +++|||+||.+ ..++.|.+|||++++|||+++||+||++||||+++....+++...+.+..   .....
T Consensus         2 ~v~~ii~~--~~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   79 (122)
T cd04673           2 AVGAVVFR--GGRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEFH   79 (122)
T ss_pred             cEEEEEEE--CCEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccceE
Confidence            34555665  47999999985 34689999999999999999999999999999998766666554433211   11123


Q ss_pred             EEEEEEEEEEecccccCCcccccceEEEehhhHHHH
Q 014873          299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKA  334 (417)
Q Consensus       299 ~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~  334 (417)
                      .+++.|.+....... .+.+|+.+++|++++++.++
T Consensus        80 ~~~~~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~  114 (122)
T cd04673          80 YVLIDFLCRYLGGEP-VAGDDALDARWVPLDELAAL  114 (122)
T ss_pred             EEEEEEEEEeCCCcc-cCCcccceeEEECHHHHhhC
Confidence            455666666555444 34578999999999999974

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.72  E-value=1e-16  Score=142.35  Aligned_cols=126  Identities=19%  Similarity=0.253  Sum_probs=86.5

Q ss_pred             cEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCee--ccEEEEEEe---ec-------
Q 014873          222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV--GEVVYHTSQ---PW-------  289 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v--~~v~~~~s~---~~-------  289 (417)
                      ..|.+++++. +++|||+||.. .++.|++|||++|+|||+++||+||++||||+++  ..+..+...   .+       
T Consensus         8 ~~v~~vi~~~-~~~vLl~~r~~-~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   85 (148)
T PRK09438          8 VSVLVVIYTP-DLGVLMLQRAD-DPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIFPHWR   85 (148)
T ss_pred             eEEEEEEEeC-CCeEEEEEecC-CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccchhhh
Confidence            3455556654 67899998864 3589999999999999999999999999999988  444332211   01       


Q ss_pred             -CCCCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHH
Q 014873          290 -PVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKV  351 (417)
Q Consensus       290 -~~~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l  351 (417)
                       .+.+ .........|.+....+ ...+.+|+.+++|++++++.+++..+..+.++..+..++
T Consensus        86 ~~~~~-~~~~~~~~~f~~~~~~~-~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~  146 (148)
T PRK09438         86 HRYAP-GVTRNTEHWFCLALPHE-RPVVLTEHLAYQWLDAREAAALTKSWSNAEAIEQLVIRL  146 (148)
T ss_pred             hcccc-ccCCceeEEEEEecCCC-CccccCcccceeeCCHHHHHHHhcChhHHHHHHHHHHHh
Confidence             0111 11234455566654332 233446999999999999999888877777766554443

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.72  E-value=7.9e-17  Score=140.57  Aligned_cols=117  Identities=22%  Similarity=0.224  Sum_probs=84.6

Q ss_pred             cEEEEEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEE
Q 014873          222 PVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL  300 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l  300 (417)
                      ++..+++.+  +++|||++|.+ ..++.|.+|||+||.|||+++||+||++||||+++..+.+++...+..... ....+
T Consensus         2 ~~~~~~i~~--~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~-~~~~~   78 (137)
T cd03427           2 LTTLCFIKD--PDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGE-EERYG   78 (137)
T ss_pred             eEEEEEEEE--CCEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCC-CcEEE
Confidence            345556665  48999999885 357899999999999999999999999999999998888777766553221 12345


Q ss_pred             EEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHH
Q 014873          301 MVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIK  342 (417)
Q Consensus       301 ~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~  342 (417)
                      +..|.+........ +.+|..+++|++++++++...+.....
T Consensus        79 ~~~f~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~~~~  119 (137)
T cd03427          79 VFVFLATEFEGEPL-KESEEGILDWFDIDDLPLLPMWPGDRE  119 (137)
T ss_pred             EEEEEECCcccccC-CCCccccceEEcHhhcccccCCCCcHH
Confidence            55555554444333 345667899999999987544444433

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=9.6e-17  Score=139.76  Aligned_cols=112  Identities=23%  Similarity=0.273  Sum_probs=77.9

Q ss_pred             CCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEecc
Q 014873          232 ENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSF  311 (417)
Q Consensus       232 ~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~~  311 (417)
                      .+++|||+||....+|.|.+|||+||+|||+++||.||++||||+++..+.........+............|++.....
T Consensus        12 ~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~   91 (131)
T cd04695          12 KETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGFVPPH   91 (131)
T ss_pred             CCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEEecCC
Confidence            46899999998656799999999999999999999999999999998654321111011111111123344555555433


Q ss_pred             cccCCcccccceEEEehhhHHHHhhhhhHHHH
Q 014873          312 EINVDKEELEDARWHSREDVKKALTFAEYIKA  343 (417)
Q Consensus       312 ~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a  343 (417)
                      ......+|+.+++|++++++.+++.++..+.+
T Consensus        92 ~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~  123 (131)
T cd04695          92 QEVVLNHEHTEYRWCSFAEALELAPFPGQRAL  123 (131)
T ss_pred             CccccCchhcccEecCHHHHHHhcCChhHHHH
Confidence            32323479999999999999998877665544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=1.1e-16  Score=138.51  Aligned_cols=104  Identities=27%  Similarity=0.418  Sum_probs=78.8

Q ss_pred             EEEEEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEE
Q 014873          223 VVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLM  301 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~  301 (417)
                      ++.+++++. +++|||+||.+ ..++.|.+|||+||.|||+++||+||++||||+++.....+......      ...++
T Consensus         2 ~~~~vv~~~-~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~------~~~~~   74 (123)
T cd04671           2 IVAAVILNN-QGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG------GSWFR   74 (123)
T ss_pred             EEEEEEEcC-CCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC------CeEEE
Confidence            344555553 68999999875 34789999999999999999999999999999999777666544321      23567


Q ss_pred             EEEEEEEecccccC---CcccccceEEEehhhHHH
Q 014873          302 VGFYAYAKSFEINV---DKEELEDARWHSREDVKK  333 (417)
Q Consensus       302 i~f~a~~~~~~~~~---~~~E~~~a~Wf~~del~~  333 (417)
                      +.|.+....+.+..   ++.|+.+++||++++++.
T Consensus        75 ~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~  109 (123)
T cd04671          75 FVFTGNITGGDLKTEKEADSESLQARWYSNKDLPL  109 (123)
T ss_pred             EEEEEEEeCCeEccCCCCCcceEEEEEECHHHCCC
Confidence            77777766554432   345777999999999954

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.71  E-value=1e-16  Score=139.95  Aligned_cols=113  Identities=31%  Similarity=0.264  Sum_probs=85.7

Q ss_pred             EEEEEEEecCCCEEEEEEecCC--CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEE
Q 014873          223 VVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL  300 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~~--~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l  300 (417)
                      +|.+++++. ++++||+++.+.  .++.|++|||+||.||++++||+||++||||+.+..+.+++......+   .....
T Consensus         4 ~v~v~~~~~-~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~---~~~~~   79 (137)
T cd03424           4 AVAVLPYDD-DGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPG---FSDER   79 (137)
T ss_pred             EEEEEEEcC-CCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCc---ccCcc
Confidence            455666665 589999988753  356999999999999999999999999999999988887776543321   12345


Q ss_pred             EEEEEEEEeccc--ccCCcccccceEEEehhhHHHHhhhhh
Q 014873          301 MVGFYAYAKSFE--INVDKEELEDARWHSREDVKKALTFAE  339 (417)
Q Consensus       301 ~i~f~a~~~~~~--~~~~~~E~~~a~Wf~~del~~~L~~~~  339 (417)
                      +..|++......  ...++.|+.+++|++++++.+++..++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~  120 (137)
T cd03424          80 IHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADGE  120 (137)
T ss_pred             EEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcCC
Confidence            556666655433  345678999999999999999776544

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=1.6e-16  Score=137.11  Aligned_cols=107  Identities=29%  Similarity=0.418  Sum_probs=75.5

Q ss_pred             EEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEE
Q 014873          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV  302 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i  302 (417)
                      .|.++|++. +++|||+||....++.|.+|||++|.|||+++||+||++||||+++....++....+....  ... ..+
T Consensus         4 ~~~~~v~~~-~~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~--~~~-~~~   79 (127)
T cd04670           4 GVGGLVLNE-KNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGA--FGK-SDL   79 (127)
T ss_pred             EEEEEEEcC-CCeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCC--cCc-eeE
Confidence            455566664 5899999876545799999999999999999999999999999998766655443332111  111 112


Q ss_pred             EEEEEEe--cccccCCcccccceEEEehhhHHH
Q 014873          303 GFYAYAK--SFEINVDKEELEDARWHSREDVKK  333 (417)
Q Consensus       303 ~f~a~~~--~~~~~~~~~E~~~a~Wf~~del~~  333 (417)
                      .|.+.+.  ...+..+++|..+++||+++++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~  112 (127)
T cd04670          80 YFICRLKPLSFDINFDTSEIAAAKWMPLEEYIS  112 (127)
T ss_pred             EEEEEEccCcCcCCCChhhhheeEEEcHHHHhc
Confidence            2333332  223445678889999999999975

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.71  E-value=6.5e-17  Score=139.69  Aligned_cols=108  Identities=31%  Similarity=0.395  Sum_probs=81.1

Q ss_pred             CCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEE----EeecCCCCCCCCcEEEEEEEEEE
Q 014873          233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT----SQPWPVGPNSMPCQLMVGFYAYA  308 (417)
Q Consensus       233 ~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~----s~~~~~~~~~~p~~l~i~f~a~~  308 (417)
                      +.+|||+||..   +.|.+|||++++|||+++||.||++||||+.+..+.++.    ...+..   ......+..|.+.+
T Consensus        16 ~~~vLl~~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~f~~~~   89 (130)
T cd03428          16 EIEYLLLQASY---GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQV---RGKLKTVTYFLAEL   89 (130)
T ss_pred             CceEEEEEccC---CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccc---cCcceEEEEEEEEe
Confidence            34799999885   899999999999999999999999999999987665532    222221   11234555666666


Q ss_pred             e-cccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHH
Q 014873          309 K-SFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTA  347 (417)
Q Consensus       309 ~-~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a  347 (417)
                      . ...+..+ +|+.+++|++++++.+++.++..+..++++
T Consensus        90 ~~~~~~~~~-~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~  128 (130)
T cd03428          90 RPDVEVKLS-EEHQDYRWLPYEEALKLLTYEDLKAVLDKA  128 (130)
T ss_pred             CCCCccccc-cceeeEEeecHHHHHHHcCchhHHHHHHHh
Confidence            5 3344444 789999999999999999888877665543

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=1.2e-16  Score=138.44  Aligned_cols=112  Identities=17%  Similarity=0.264  Sum_probs=84.7

Q ss_pred             EEEEEEEecCCCEEEEEEecC---CCCCcEEe-eeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCc
Q 014873          223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC  298 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~---~~~g~Wsl-PgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~  298 (417)
                      ++.+++++. +++|||++|..   +.+|+|++ |||++++||++++||+||++||||+.+..+..++.+.+...   ...
T Consensus         2 ~~~v~i~~~-~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~---~~~   77 (126)
T cd04697           2 ATYIFVFNS-EGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTD---GNR   77 (126)
T ss_pred             eEEEEEEcC-CCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCC---Cce
Confidence            345666665 68999999874   46799998 69999999999999999999999999987777776655422   122


Q ss_pred             EEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhh
Q 014873          299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAE  339 (417)
Q Consensus       299 ~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~  339 (417)
                      .....|.+.. ..++..+++|+.+++|++++++.+++..+.
T Consensus        78 ~~~~~f~~~~-~~~~~~~~~E~~~~~w~~~~el~~~~~~~~  117 (126)
T cd04697          78 VWGKVFSCVY-DGPLKLQEEEVEEITWLSINEILQFKEGEN  117 (126)
T ss_pred             EEEEEEEEEE-CCCCCCCHhHhhheEEcCHHHHHHHhhcCc
Confidence            3344555544 345556678999999999999999776543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.70  E-value=2.2e-16  Score=140.37  Aligned_cols=113  Identities=25%  Similarity=0.355  Sum_probs=81.0

Q ss_pred             cEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeec----CCCCC---
Q 014873          222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW----PVGPN---  294 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~----~~~~~---  294 (417)
                      ++|.+++++. +++|||+||.+.. +.|++|||++|+||++.+||.||++||||+++..+..++..+.    .+...   
T Consensus         4 ~~v~~ii~~~-~~~vLL~~r~~~~-~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~~~~   81 (147)
T cd03671           4 PNVGVVLFNE-DGKVFVGRRIDTP-GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELKL   81 (147)
T ss_pred             ceEEEEEEeC-CCEEEEEEEcCCC-CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhhhhc
Confidence            5677777775 5899999998755 8999999999999999999999999999999877666655321    11100   


Q ss_pred             -C----CCcEEEEEEEEEEec--ccccCC---cccccceEEEehhhHHHHhh
Q 014873          295 -S----MPCQLMVGFYAYAKS--FEINVD---KEELEDARWHSREDVKKALT  336 (417)
Q Consensus       295 -~----~p~~l~i~f~a~~~~--~~~~~~---~~E~~~a~Wf~~del~~~L~  336 (417)
                       .    +.......|++.+..  .++.++   ++|+.+++||+++++.+++.
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~  133 (147)
T cd03671          82 KIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIV  133 (147)
T ss_pred             cccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhch
Confidence             0    112333444444433  344443   46999999999999998643

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.70  E-value=1.2e-16  Score=143.80  Aligned_cols=110  Identities=19%  Similarity=0.212  Sum_probs=83.9

Q ss_pred             cEEEEEEEecC-CCEEEEEEecC---CCCCcEEeeeeeccCC-CCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC
Q 014873          222 PVVIMLVIDRE-NDRVLLSRQSR---FVPRMWSCIAGFIEPG-ESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM  296 (417)
Q Consensus       222 pvVivlvi~~~-~~kVLL~rr~~---~~~g~WslPgG~VE~G-EtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~  296 (417)
                      .+|++++.+.+ +++|||+||..   ..+|.|++|||+||+| ||+++||+||++||||+++..+.+++.....+...  
T Consensus         3 ~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~--   80 (157)
T cd03426           3 AAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRS--   80 (157)
T ss_pred             eEEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccC--
Confidence            45666666653 36999999986   2579999999999999 99999999999999999998888887765433222  


Q ss_pred             CcEEEEEEEEEEecc-cccCCcccccceEEEehhhHHHH
Q 014873          297 PCQLMVGFYAYAKSF-EINVDKEELEDARWHSREDVKKA  334 (417)
Q Consensus       297 p~~l~i~f~a~~~~~-~~~~~~~E~~~a~Wf~~del~~~  334 (417)
                       ...+..|++..... .+.++++|+.+++|++++++.+.
T Consensus        81 -~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  118 (157)
T cd03426          81 -GFVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP  118 (157)
T ss_pred             -CCEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence             22334455554432 55667789999999999999973

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.70  E-value=1.9e-16  Score=139.51  Aligned_cols=108  Identities=25%  Similarity=0.430  Sum_probs=69.6

Q ss_pred             EEEEEecCCCEEEEEEecC---CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEE--------EeecCCCC
Q 014873          225 IMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT--------SQPWPVGP  293 (417)
Q Consensus       225 ivlvi~~~~~kVLL~rr~~---~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~--------s~~~~~~~  293 (417)
                      ++++++. +++|||+||..   ..+|.|++|||+||+|||+++||+||++||||+++.......        ...++.+.
T Consensus         7 ~~~ii~~-~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   85 (141)
T PRK15472          7 VCPLIQN-DGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGR   85 (141)
T ss_pred             EEEEEec-CCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCC
Confidence            3444444 68999999864   357999999999999999999999999999999864221100        01111111


Q ss_pred             CCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHH
Q 014873          294 NSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKA  334 (417)
Q Consensus       294 ~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~  334 (417)
                      ......+++.|.+......+.. .+|+.+++||+++++.++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~l  125 (141)
T PRK15472         86 KEEIYMIYLIFDCVSANRDVKI-NEEFQDYAWVKPEDLVHY  125 (141)
T ss_pred             ceeEEEEEEEEEeecCCCcccC-ChhhheEEEccHHHhccc
Confidence            0000111222333333334444 478999999999999984

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=1.4e-16  Score=136.86  Aligned_cols=104  Identities=26%  Similarity=0.297  Sum_probs=75.9

Q ss_pred             EEEEEEEecCCCEEEEEEecC----CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeecc--EEEEEEeecCCCCCCC
Q 014873          223 VVIMLVIDRENDRVLLSRQSR----FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE--VVYHTSQPWPVGPNSM  296 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~----~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~--v~~~~s~~~~~~~~~~  296 (417)
                      |+++++++  +++|||+||.+    ..+|.|.+|||+|+.|||+++||.||++||||+++..  +.+...+...     .
T Consensus         3 v~~~~~~~--~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~-----~   75 (122)
T cd04682           3 VALALLIG--DGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSA-----S   75 (122)
T ss_pred             eEEEEEEc--CCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccC-----C
Confidence            34444544  48999999974    3579999999999999999999999999999999853  2222222211     1


Q ss_pred             CcEEEEEEEEEEeccc-ccCCcccccceEEEehhhHHH
Q 014873          297 PCQLMVGFYAYAKSFE-INVDKEELEDARWHSREDVKK  333 (417)
Q Consensus       297 p~~l~i~f~a~~~~~~-~~~~~~E~~~a~Wf~~del~~  333 (417)
                      ....+..|.+...... ...+.+|+.+++|++++++.+
T Consensus        76 ~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  113 (122)
T cd04682          76 PPGTEHVFVVPLTAREDAILFGDEGQALRLMTVEEFLA  113 (122)
T ss_pred             CCceEEEEEEEEecCCCccccCchhheeecccHHHHhh
Confidence            2345556666655433 456678999999999999976

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=3.4e-16  Score=133.81  Aligned_cols=117  Identities=27%  Similarity=0.347  Sum_probs=82.4

Q ss_pred             CcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeec-----CCCCCC
Q 014873          221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW-----PVGPNS  295 (417)
Q Consensus       221 ~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~-----~~~~~~  295 (417)
                      .|+|.+++.+. +++|||+||..  .|.|.+|||+++.|||+++||.||++||||+++....+++....     .+....
T Consensus         2 ~~~v~~ii~~~-~~~vLl~~r~~--~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~   78 (129)
T cd04676           2 LPGVTAVVRDD-EGRVLLIRRSD--NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGD   78 (129)
T ss_pred             cceEEEEEECC-CCeEEEEEecC--CCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCC
Confidence            35666666664 58999999875  38999999999999999999999999999999866555332211     111111


Q ss_pred             CCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhH
Q 014873          296 MPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEY  340 (417)
Q Consensus       296 ~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~  340 (417)
                      ....+.+.|++.........+.+|..+++|++++++.++......
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~  123 (129)
T cd04676          79 VRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPLLMHPSM  123 (129)
T ss_pred             cEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccccCCHhH
Confidence            123455666665555444345678899999999999985444333

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=3.4e-16  Score=134.63  Aligned_cols=106  Identities=21%  Similarity=0.250  Sum_probs=76.7

Q ss_pred             EEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC-CC-CCCcEEE
Q 014873          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG-PN-SMPCQLM  301 (417)
Q Consensus       224 Vivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~-~~-~~p~~l~  301 (417)
                      |.++|++  +++|||+++.+  .+.|.+|||+|++|||+++||+||++||||+.+....+++....... .. .....++
T Consensus         5 v~~~i~~--~~~vLL~~~~~--~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (123)
T cd04672           5 VRAAIFK--DGKILLVREKS--DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQPYQVYK   80 (123)
T ss_pred             EEEEEEE--CCEEEEEEEcC--CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCceEEEE
Confidence            4455666  48999999875  68999999999999999999999999999999854444444322211 11 1112345


Q ss_pred             EEEEEEEecccccCCcccccceEEEehhhHHHH
Q 014873          302 VGFYAYAKSFEINVDKEELEDARWHSREDVKKA  334 (417)
Q Consensus       302 i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~  334 (417)
                      +.|.+......+... +|..+++||++++++++
T Consensus        81 ~~f~~~~~~~~~~~~-~E~~~~~W~~~~el~~l  112 (123)
T cd04672          81 LFFLCEILGGEFKPN-IETSEVGFFALDDLPPL  112 (123)
T ss_pred             EEEEEEecCCcccCC-CceeeeEEECHHHCccc
Confidence            566666655555444 78999999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=3.7e-16  Score=134.47  Aligned_cols=102  Identities=22%  Similarity=0.258  Sum_probs=73.6

Q ss_pred             EEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEE
Q 014873          225 IMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGF  304 (417)
Q Consensus       225 ivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f  304 (417)
                      .+++++. +++|||+||.+...+.|++|||+||+|||+++||+||++||||+++.....++...+.       ....+.|
T Consensus         4 ~~ii~~~-~~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~~-------~~~~~~f   75 (121)
T cd04669           4 SIVIIND-QGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQN-------GRTEHYF   75 (121)
T ss_pred             EEEEEeC-CCEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEeeC-------CcEEEEE
Confidence            3445553 5899999987655689999999999999999999999999999998655555554331       1234566


Q ss_pred             EEEEecccccCC---------cccccceEEEehhhHHHH
Q 014873          305 YAYAKSFEINVD---------KEELEDARWHSREDVKKA  334 (417)
Q Consensus       305 ~a~~~~~~~~~~---------~~E~~~a~Wf~~del~~~  334 (417)
                      .+....+.+...         +++..+++||++++++++
T Consensus        76 ~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l  114 (121)
T cd04669          76 LARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI  114 (121)
T ss_pred             EEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence            666544333221         234567899999999973

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.69  E-value=2.3e-16  Score=140.60  Aligned_cols=109  Identities=19%  Similarity=0.323  Sum_probs=75.0

Q ss_pred             cEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEE
Q 014873          222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLM  301 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~  301 (417)
                      |++.+++++.++++|||+|+.+  .+.|++|||++|+|||+++||+||++||||+++........+...    ......+
T Consensus         2 p~~gaii~~~~~~~vLLvr~~~--~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~~~~~~----~~~~~~~   75 (145)
T cd03672           2 PVYGAIILNEDLDKVLLVKGWK--SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKDDYIEL----IIRGQNV   75 (145)
T ss_pred             CeeEEEEEeCCCCEEEEEEecC--CCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccccceeeec----ccCCcEE
Confidence            5677777776557999999874  358999999999999999999999999999988653211111111    0112233


Q ss_pred             EEEEEEEeccc--ccC-CcccccceEEEehhhHHHHhh
Q 014873          302 VGFYAYAKSFE--INV-DKEELEDARWHSREDVKKALT  336 (417)
Q Consensus       302 i~f~a~~~~~~--~~~-~~~E~~~a~Wf~~del~~~L~  336 (417)
                      ..|++......  ... +.+|+.+++||+++++++++.
T Consensus        76 ~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~  113 (145)
T cd03672          76 KLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKN  113 (145)
T ss_pred             EEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhh
Confidence            44444322221  122 347899999999999998654

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=1.9e-16  Score=136.80  Aligned_cols=110  Identities=24%  Similarity=0.372  Sum_probs=78.4

Q ss_pred             EEEEEEEecCCCEEEEEEecC---CCCCcEEee-eeeccCCCCHHHHHHHHHHHHhCCeec--cEEEEEEeecCCCCCCC
Q 014873          223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPGESLEEAVRRETWEETGIEVG--EVVYHTSQPWPVGPNSM  296 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~---~~~g~WslP-gG~VE~GEtleeAa~REv~EEtGl~v~--~v~~~~s~~~~~~~~~~  296 (417)
                      +|.+++++. +++|||+||+.   ..+|.|++| ||++++|||+ +||+||++||||+++.  .+..+..+.....    
T Consensus         2 ~v~v~~~~~-~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~----   75 (127)
T cd04693           2 VVHVCIFNS-KGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAE----   75 (127)
T ss_pred             eEEEEEEeC-CCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC----
Confidence            455666664 68999999874   356899998 8999999999 9999999999999975  4444444432210    


Q ss_pred             CcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhh
Q 014873          297 PCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFA  338 (417)
Q Consensus       297 p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~  338 (417)
                      ....++.|++.........+.+|+.+++|++++++.+++..+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~  117 (127)
T cd04693          76 GFDDYYLFYADVEIGKLILQKEEVDEVKFVSKDEIDGLIGHG  117 (127)
T ss_pred             CeEEEEEEEecCcccccccCHHHhhhEEEeCHHHHHHHHhcC
Confidence            112233333333344555667899999999999999987643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.68  E-value=7.9e-16  Score=132.20  Aligned_cols=120  Identities=31%  Similarity=0.459  Sum_probs=87.8

Q ss_pred             cEEEEEEEecCCCEEEEEEecCC---CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCc
Q 014873          222 PVVIMLVIDRENDRVLLSRQSRF---VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC  298 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~~---~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~  298 (417)
                      ++|.+++++. +++|||+||.+.   .++.|.+|||++++|||+++||+||+.||||+++..........+.........
T Consensus         3 ~~v~~ii~~~-~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~~   81 (134)
T PF00293_consen    3 RAVGVIIFNE-DGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPEG   81 (134)
T ss_dssp             EEEEEEEEET-TTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESSE
T ss_pred             CEEEEEEEeC-CcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCccc
Confidence            4566777775 459999999974   468999999999999999999999999999999866665555544432221123


Q ss_pred             EEEEEEEEEEecc--cccCCcccccceEEEehhhHHHHhhhhhHHH
Q 014873          299 QLMVGFYAYAKSF--EINVDKEELEDARWHSREDVKKALTFAEYIK  342 (417)
Q Consensus       299 ~l~i~f~a~~~~~--~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~  342 (417)
                      ...+.|.+.....  ....+..|..+++|++++++.++........
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~  127 (134)
T PF00293_consen   82 EIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGRIRK  127 (134)
T ss_dssp             EEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTHHHH
T ss_pred             EEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcchhh
Confidence            4455555554432  3344445999999999999999877666544

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=6.3e-16  Score=133.69  Aligned_cols=104  Identities=21%  Similarity=0.176  Sum_probs=75.6

Q ss_pred             CCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccE-EEEEEeecCCCCCCCC-cEEEEEEEEEEec
Q 014873          233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV-VYHTSQPWPVGPNSMP-CQLMVGFYAYAKS  310 (417)
Q Consensus       233 ~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v-~~~~s~~~~~~~~~~p-~~l~i~f~a~~~~  310 (417)
                      .++|||+++.+  .+.|.+|||+||.|||+++||+||++||||+++..+ .+++...+.......+ ......|.+.+..
T Consensus        14 ~~~vLLv~~~~--~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~   91 (122)
T cd04666          14 EVEVLLVTSRR--TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPPRCEVAVFPLEVTE   91 (122)
T ss_pred             ceEEEEEEecC--CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCceEEEEEEEEEEec
Confidence            46899999875  389999999999999999999999999999998766 7777766553321112 2333334444443


Q ss_pred             ccccCCcccccceEEEehhhHHHHhhhh
Q 014873          311 FEINVDKEELEDARWHSREDVKKALTFA  338 (417)
Q Consensus       311 ~~~~~~~~E~~~a~Wf~~del~~~L~~~  338 (417)
                      ........|..+++||+++++.+++.++
T Consensus        92 ~~~~~~~~e~~~~~W~~~~ea~~~~~~~  119 (122)
T cd04666          92 ELDEWPEMHQRKRKWFSPEEAALLVEEP  119 (122)
T ss_pred             cccCCcccCceEEEEecHHHHHHhcCCh
Confidence            3222234567899999999999988764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=6.2e-16  Score=131.34  Aligned_cols=105  Identities=26%  Similarity=0.325  Sum_probs=77.0

Q ss_pred             EEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeecc--EEEEEEeecCCCCCCCCcEEE
Q 014873          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE--VVYHTSQPWPVGPNSMPCQLM  301 (417)
Q Consensus       224 Vivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~--v~~~~s~~~~~~~~~~p~~l~  301 (417)
                      +.+++++. ++++||+||..  .+.|.+|||++++||++++||+||++||||+++..  +.+++...............+
T Consensus         3 ~~~~v~~~-~~~vLl~~r~~--~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (118)
T cd04690           3 AAALILVR-DGRVLLVRKRG--TDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRA   79 (118)
T ss_pred             EEEEEEec-CCeEEEEEECC--CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEE
Confidence            33445554 57999999874  57899999999999999999999999999999877  887777655422111123455


Q ss_pred             EEEEEEEecccccCCcccccceEEEehhhHHH
Q 014873          302 VGFYAYAKSFEINVDKEELEDARWHSREDVKK  333 (417)
Q Consensus       302 i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~  333 (417)
                      ..|.+.... .+. ..+|+.+++|++++++..
T Consensus        80 ~~f~~~~~~-~~~-~~~e~~~~~W~~~~e~~~  109 (118)
T cd04690          80 TVYVAELTG-EPV-PAAEIEEIRWVDYDDPAD  109 (118)
T ss_pred             EEEEEcccC-CcC-CCchhhccEEecHHHccc
Confidence            556555443 333 347999999999999865

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=5.6e-16  Score=134.04  Aligned_cols=110  Identities=23%  Similarity=0.194  Sum_probs=74.6

Q ss_pred             EEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC-----CCCCCC
Q 014873          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV-----GPNSMP  297 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~-----~~~~~p  297 (417)
                      .+.++|++  +++|||+||.+...+.|.+|||+||+|||+++||+||++||||+++..........+..     ......
T Consensus         3 ~a~~iv~~--~~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~   80 (128)
T cd04687           3 SAKAVIIK--NDKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGHF   80 (128)
T ss_pred             EEEEEEEE--CCEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCce
Confidence            44555555  58999999976556789999999999999999999999999999986433322211110     011112


Q ss_pred             cEEEEEEEEEEecccc---c-CCcccccceEEEehhhHHHH
Q 014873          298 CQLMVGFYAYAKSFEI---N-VDKEELEDARWHSREDVKKA  334 (417)
Q Consensus       298 ~~l~i~f~a~~~~~~~---~-~~~~E~~~a~Wf~~del~~~  334 (417)
                      ..+++.|.+....+..   . ..+.|..+++|+++++++++
T Consensus        81 ~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~  121 (128)
T cd04687          81 HQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDI  121 (128)
T ss_pred             eEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcc
Confidence            3456666666544332   1 12245568999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=5.3e-16  Score=131.22  Aligned_cols=94  Identities=31%  Similarity=0.375  Sum_probs=74.2

Q ss_pred             CCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEeccc
Q 014873          233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFE  312 (417)
Q Consensus       233 ~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~~~  312 (417)
                      +++|||++|.+   |.|++|||+|++||++++||.||++||||+++..+.+++.+...       ...+..|.+......
T Consensus        10 ~~~vLlv~r~~---~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~-------~~~~~~f~~~~~~~~   79 (112)
T cd04667          10 GGRVLLVRKSG---SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDGG-------STRHHVFVASVPPSA   79 (112)
T ss_pred             CCEEEEEEcCC---CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeCC-------CEEEEEEEEEcCCcC
Confidence            57999999874   89999999999999999999999999999998887777665321       234455666554443


Q ss_pred             ccCCcccccceEEEehhhHHHHhh
Q 014873          313 INVDKEELEDARWHSREDVKKALT  336 (417)
Q Consensus       313 ~~~~~~E~~~a~Wf~~del~~~L~  336 (417)
                      ....++|+.+++|++++++.++..
T Consensus        80 ~~~~~~e~~~~~W~~~~el~~~~~  103 (112)
T cd04667          80 QPKPSNEIADCRWLSLDALGDLNA  103 (112)
T ss_pred             CCCCchheeEEEEecHHHhhhccc
Confidence            333567899999999999998544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=8.6e-16  Score=132.39  Aligned_cols=106  Identities=20%  Similarity=0.213  Sum_probs=77.2

Q ss_pred             EEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC-CCCCCcEEEE
Q 014873          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG-PNSMPCQLMV  302 (417)
Q Consensus       224 Vivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~-~~~~p~~l~i  302 (417)
                      |.+++++  +++|||+|+.+  .+.|.+|||+||+|||+++||.||++||||+++....+++.....+. .......+.+
T Consensus         4 v~~vi~~--~~~vLl~~~~~--~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
T cd04688           4 AAAIIIH--NGKLLVQKNPD--ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEF   79 (126)
T ss_pred             EEEEEEE--CCEEEEEEeCC--CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEE
Confidence            3444555  46999999875  68999999999999999999999999999999877766655432211 1111234556


Q ss_pred             EEEEEEecccccC-------CcccccceEEEehhhHHH
Q 014873          303 GFYAYAKSFEINV-------DKEELEDARWHSREDVKK  333 (417)
Q Consensus       303 ~f~a~~~~~~~~~-------~~~E~~~a~Wf~~del~~  333 (417)
                      .|.+.........       +++|+.+++|++++++..
T Consensus        80 ~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~  117 (126)
T cd04688          80 YYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKE  117 (126)
T ss_pred             EEEEEeCCCcccccccceeccCCCEEEEEEeeHHHccc
Confidence            6666665544332       457899999999999885

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=1.1e-15  Score=135.22  Aligned_cols=114  Identities=22%  Similarity=0.274  Sum_probs=83.3

Q ss_pred             EEEEEEEecCC--CEEEEEEecC---CCCCcEEe-eeeeccCCCCHHHHHHHHHHHHhCCee--ccEEEEEEeecCCC-C
Q 014873          223 VVIMLVIDREN--DRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEV--GEVVYHTSQPWPVG-P  293 (417)
Q Consensus       223 vVivlvi~~~~--~kVLL~rr~~---~~~g~Wsl-PgG~VE~GEtleeAa~REv~EEtGl~v--~~v~~~~s~~~~~~-~  293 (417)
                      +|.++|++..+  ++|||++|..   ..+|.|.+ |||+|++|||+++||+||++||||+.+  ..+.+++.....+. .
T Consensus         4 ~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~   83 (144)
T cd04692           4 TFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDHI   83 (144)
T ss_pred             EEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEecccc
Confidence            56677777632  8999999984   46799998 599999999999999999999999976  35666665543332 1


Q ss_pred             CC-CCcEEEEEEEEEEec--ccccCCcccccceEEEehhhHHHHhh
Q 014873          294 NS-MPCQLMVGFYAYAKS--FEINVDKEELEDARWHSREDVKKALT  336 (417)
Q Consensus       294 ~~-~p~~l~i~f~a~~~~--~~~~~~~~E~~~a~Wf~~del~~~L~  336 (417)
                      .. ....+...|++....  ..+..+++|+.+++|++++++.+++.
T Consensus        84 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~  129 (144)
T cd04692          84 GKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLE  129 (144)
T ss_pred             CCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHH
Confidence            11 112344556665443  34455678999999999999998765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.65  E-value=4.7e-15  Score=137.16  Aligned_cols=115  Identities=21%  Similarity=0.204  Sum_probs=83.6

Q ss_pred             EEEEEEEecCCCEEEEEEecCC--CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEE
Q 014873          223 VVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL  300 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~~--~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l  300 (417)
                      +|+++.++. +++|||+||.+.  ....|++|||.||+||++++||+||++||||+++..+.+++......+   .....
T Consensus        49 ~v~v~~~~~-~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~---~~~~~  124 (185)
T PRK11762         49 AVMIVPILD-DDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPS---YFSSK  124 (185)
T ss_pred             EEEEEEEeC-CCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCC---ccCcE
Confidence            344444443 679999999864  345799999999999999999999999999999999998887643322   12345


Q ss_pred             EEEEEEEEecc-cccCCcccccceEEEehhhHHHHhhhhhHH
Q 014873          301 MVGFYAYAKSF-EINVDKEELEDARWHSREDVKKALTFAEYI  341 (417)
Q Consensus       301 ~i~f~a~~~~~-~~~~~~~E~~~a~Wf~~del~~~L~~~~~~  341 (417)
                      +..|++..... ....++.|..++.|++++++.+++..+.+.
T Consensus       125 ~~~f~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~g~i~  166 (185)
T PRK11762        125 MNIVLAEDLYPERLEGDEPEPLEVVRWPLADLDELLARPDFS  166 (185)
T ss_pred             EEEEEEEccccccCCCCCCceeEEEEEcHHHHHHHHHcCCCC
Confidence            55566653322 223345667789999999999987755443

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.64  E-value=6.8e-15  Score=132.55  Aligned_cols=113  Identities=25%  Similarity=0.351  Sum_probs=81.0

Q ss_pred             CcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEee----cCCC----
Q 014873          221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQP----WPVG----  292 (417)
Q Consensus       221 ~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~----~~~~----  292 (417)
                      .++|.++|++. +++|||+||.+ .++.|++|||++++||++++||.||++||||+++..+.+++...    +.+.    
T Consensus         8 ~~~v~~~i~~~-~g~vLL~~r~~-~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~~~~~   85 (156)
T PRK00714          8 RPNVGIILLNR-QGQVFWGRRIG-QGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLPKRLV   85 (156)
T ss_pred             CCeEEEEEEec-CCEEEEEEEcC-CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCcHHHh
Confidence            45666777775 68999999975 35899999999999999999999999999999987777666542    1111    


Q ss_pred             ---CCCCCcEEEEEEEEEEec--ccccC---CcccccceEEEehhhHHHHh
Q 014873          293 ---PNSMPCQLMVGFYAYAKS--FEINV---DKEELEDARWHSREDVKKAL  335 (417)
Q Consensus       293 ---~~~~p~~l~i~f~a~~~~--~~~~~---~~~E~~~a~Wf~~del~~~L  335 (417)
                         ...+.....+.|.+....  ..+.+   +++|+.+++||+++++++++
T Consensus        86 ~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~  136 (156)
T PRK00714         86 RRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQV  136 (156)
T ss_pred             hccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhc
Confidence               001112234555555432  23333   33699999999999999865

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=3.2e-15  Score=128.67  Aligned_cols=104  Identities=22%  Similarity=0.254  Sum_probs=73.1

Q ss_pred             EEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC-CCCCcEEEEE
Q 014873          225 IMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP-NSMPCQLMVG  303 (417)
Q Consensus       225 ivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~-~~~p~~l~i~  303 (417)
                      .++|+.  +++|||+|+..  .+.|.+|||++|+|||+++||+||++||||+++....+++.....+.. ......+++.
T Consensus         5 ~~vi~~--~~~vLlv~~~~--~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04689           5 RAIVRA--GNKVLLARVIG--QPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEINHI   80 (125)
T ss_pred             EEEEEe--CCEEEEEEecC--CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEEEE
Confidence            344444  68999999863  578999999999999999999999999999998777766554322211 1112344555


Q ss_pred             EEEEEeccc---ccCCcccccceEEEehhhHH
Q 014873          304 FYAYAKSFE---INVDKEELEDARWHSREDVK  332 (417)
Q Consensus       304 f~a~~~~~~---~~~~~~E~~~a~Wf~~del~  332 (417)
                      |.+......   ....++|+.+++|++++++.
T Consensus        81 f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~  112 (125)
T cd04689          81 FAVESSWLASDGPPQADEDHLSFSWVPVSDLS  112 (125)
T ss_pred             EEEEcccccccCCccCccceEEEEEccHHHcc
Confidence            555543221   22335678999999999975

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=7.1e-15  Score=130.74  Aligned_cols=114  Identities=24%  Similarity=0.375  Sum_probs=78.3

Q ss_pred             EEEEEEEecCCCEEEEEEecC---CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccE----EEEEEee--cCCC-
Q 014873          223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV----VYHTSQP--WPVG-  292 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~---~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v----~~~~s~~--~~~~-  292 (417)
                      +|.+++++. +++|||+||..   .++|.|++|||++++||++++||+||++||+|+.+...    ++++...  ++.. 
T Consensus         3 ~v~viv~~~-~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~   81 (143)
T cd04694           3 GVAVLLQSS-DQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLL   81 (143)
T ss_pred             EEEEEEEcC-CCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecccccccc
Confidence            455555554 68999999985   46799999999999999999999999999999987643    3443321  2210 


Q ss_pred             CCCC--CcEEEEEEEEEEecc------cccCCcccccceEEEehhhHHHHhhh
Q 014873          293 PNSM--PCQLMVGFYAYAKSF------EINVDKEELEDARWHSREDVKKALTF  337 (417)
Q Consensus       293 ~~~~--p~~l~i~f~a~~~~~------~~~~~~~E~~~a~Wf~~del~~~L~~  337 (417)
                      ....  .....+.|++.....      .+..+++|+.+++|++++++.+++.+
T Consensus        82 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~~  134 (143)
T cd04694          82 SRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVSA  134 (143)
T ss_pred             CCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHHh
Confidence            1111  123333333332211      23456689999999999999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=4e-15  Score=127.71  Aligned_cols=108  Identities=27%  Similarity=0.384  Sum_probs=74.5

Q ss_pred             EEEEEEEecCCCEEEEEEecCC---CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcE
Q 014873          223 VVIMLVIDRENDRVLLSRQSRF---VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQ  299 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~~---~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~  299 (417)
                      +|.++|.+ ++++|||+||...   .+|+|++|||++++|||+++||+||++||||+.+.....+........ ......
T Consensus         3 ~v~~vv~~-~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~-~~~~~~   80 (129)
T cd04699           3 AVAALIVK-DVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHED-SGVYNV   80 (129)
T ss_pred             eEEEEEEC-CCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcC-CCEEEE
Confidence            45555555 3589999999753   478999999999999999999999999999999876655322211111 101233


Q ss_pred             EEEEEEEEEecccccCCcccccceEEEehhhHHH
Q 014873          300 LMVGFYAYAKSFEINVDKEELEDARWHSREDVKK  333 (417)
Q Consensus       300 l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~  333 (417)
                      +.+.|.+..... .....+|..+++|++++++..
T Consensus        81 ~~~~~~~~~~~~-~~~~~~e~~~~~w~~~~el~~  113 (129)
T cd04699          81 IYLVFVCEALSG-AVKLSDEHEEYAWVTLEELAI  113 (129)
T ss_pred             EEEEEEeeecCC-cccCChhheEEEEecHHHhhh
Confidence            444555443332 223457888999999999965

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.62  E-value=3.9e-15  Score=137.26  Aligned_cols=108  Identities=24%  Similarity=0.403  Sum_probs=78.0

Q ss_pred             cEEEEEEEecCCCEEEEEEecC---CCCCcE-EeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC
Q 014873          222 PVVIMLVIDRENDRVLLSRQSR---FVPRMW-SCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP  297 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~---~~~g~W-slPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p  297 (417)
                      +++.++|++. +++|||++|..   +.+|.| .+|||+|++|||+++||+||++||||+.+..+.+++...+...    .
T Consensus        38 ~~~~v~v~~~-~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~----~  112 (180)
T PRK15393         38 RATYIVVHDG-MGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDE----N  112 (180)
T ss_pred             EEEEEEEECC-CCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCC----C
Confidence            4555566654 68999999873   346766 5899999999999999999999999998776666655433211    1


Q ss_pred             cEEE-EEEEEEEecccccCCcccccceEEEehhhHHHHh
Q 014873          298 CQLM-VGFYAYAKSFEINVDKEELEDARWHSREDVKKAL  335 (417)
Q Consensus       298 ~~l~-i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L  335 (417)
                      ...+ ..|.+. ......++++|+.+++|++++++.+++
T Consensus       113 ~~~~~~~f~~~-~~~~~~~~~~E~~~~~W~~~~el~~~~  150 (180)
T PRK15393        113 CRVWGALFSCV-SHGPFALQEEEVSEVCWMTPEEITARC  150 (180)
T ss_pred             ceEEEEEEEEE-eCCCCCCChHHeeEEEECCHHHHhhhh
Confidence            1222 233333 345566677899999999999999864

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.61  E-value=4.1e-15  Score=134.90  Aligned_cols=114  Identities=22%  Similarity=0.367  Sum_probs=80.2

Q ss_pred             cEEEEEEEecCCCEEEEEEecC---CCCCcEEee-eeeccCCCCHHHHHHHHHHHHhCCeeccEEEE-EEeecC--CCCC
Q 014873          222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPGESLEEAVRRETWEETGIEVGEVVYH-TSQPWP--VGPN  294 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~---~~~g~WslP-gG~VE~GEtleeAa~REv~EEtGl~v~~v~~~-~s~~~~--~~~~  294 (417)
                      .+|.+++++. +++|||+||..   ..+|.|++| ||+||+|||+++||+||++||||+++..+.++ ....+.  +...
T Consensus        31 ~~v~v~i~~~-~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~  109 (165)
T cd02885          31 RAFSVFLFNS-KGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDGG  109 (165)
T ss_pred             eEEEEEEEcC-CCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCCC
Confidence            4455556664 68999999974   357999986 89999999999999999999999998655543 222221  1111


Q ss_pred             CCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhh
Q 014873          295 SMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTF  337 (417)
Q Consensus       295 ~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~  337 (417)
                      .....+...|.+... .....+.+|+.+++|++++++.+++..
T Consensus       110 ~~~~~i~~~f~~~~~-~~~~~~~~Ev~~~~w~~~~el~~~~~~  151 (165)
T cd02885         110 LVEHEIDHVFFARAD-VTLIPNPDEVSEYRWVSLEDLKELVAA  151 (165)
T ss_pred             ceeeEEEEEEEEEeC-CCCCCCccceeEEEEECHHHHHHHHHh
Confidence            111234455555443 344456789999999999999997764

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.61  E-value=7.1e-15  Score=128.57  Aligned_cols=102  Identities=21%  Similarity=0.249  Sum_probs=72.6

Q ss_pred             CCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEE-----eecCC--CC--CCCCcEEEEE
Q 014873          233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS-----QPWPV--GP--NSMPCQLMVG  303 (417)
Q Consensus       233 ~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s-----~~~~~--~~--~~~p~~l~i~  303 (417)
                      +.++||+|+.....|.|+||||+||+|||+++||.||++||||+.+.. ..++.     ..+.+  +.  ........+.
T Consensus        12 ~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (132)
T cd04661          12 DTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGAKVFF   90 (132)
T ss_pred             CcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCcccEEEE
Confidence            678999998754468999999999999999999999999999997642 22211     11111  10  0111234556


Q ss_pred             EEEEEecccccCCcccccceEEEehhhHHHHhh
Q 014873          304 FYAYAKSFEINVDKEELEDARWHSREDVKKALT  336 (417)
Q Consensus       304 f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~  336 (417)
                      |.+...++.+.. .+|+.+++|++++++++++.
T Consensus        91 f~~~~~~g~~~~-~~e~~~~~W~~~~el~~~l~  122 (132)
T cd04661          91 FKARYMSGQFEL-SQNQVDFKWLAKEELQKYLN  122 (132)
T ss_pred             EEEEEecCcccc-CCCcceeEecCHHHHHhhcC
Confidence            666666655543 37899999999999998765

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.61  E-value=5.3e-15  Score=136.72  Aligned_cols=116  Identities=23%  Similarity=0.380  Sum_probs=82.6

Q ss_pred             CcEEEEEEEecCCCEEEEEEecC---CCCCcEEee-eeeccCCCCHHHHHHHHHHHHhCCeeccEEE-EEEeecC--CCC
Q 014873          221 DPVVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPGESLEEAVRRETWEETGIEVGEVVY-HTSQPWP--VGP  293 (417)
Q Consensus       221 ~pvVivlvi~~~~~kVLL~rr~~---~~~g~WslP-gG~VE~GEtleeAa~REv~EEtGl~v~~v~~-~~s~~~~--~~~  293 (417)
                      ..+|.+++++. +++|||+||..   ..+|.|++| ||++++|||+++||+||++||||+++..+.. ++...+.  ...
T Consensus        34 h~av~v~i~~~-~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  112 (184)
T PRK03759         34 HLAFSCYLFDA-DGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDPN  112 (184)
T ss_pred             eeEEEEEEEcC-CCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecCC
Confidence            45667777764 68999999863   346889876 8999999999999999999999999864432 2222211  111


Q ss_pred             CCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhh
Q 014873          294 NSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFA  338 (417)
Q Consensus       294 ~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~  338 (417)
                      ......++..|.+... +.+.++++|+.+++|++++++.+++..+
T Consensus       113 ~~~~~~~~~vf~~~~~-~~~~~~~~Ev~~~~W~~~~el~~~i~~~  156 (184)
T PRK03759        113 GIVENEVCPVFAARVT-SALQPNPDEVMDYQWVDPADLLRAVDAT  156 (184)
T ss_pred             CceeeEEEEEEEEEEC-CCCCCChhHeeeEEEECHHHHHHHHHhC
Confidence            1112235556666554 4566677899999999999999977644

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.60  E-value=1.5e-14  Score=126.19  Aligned_cols=106  Identities=18%  Similarity=0.219  Sum_probs=70.5

Q ss_pred             EEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCee-ccEEEEEEee----cCCCCCCCCc
Q 014873          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV-GEVVYHTSQP----WPVGPNSMPC  298 (417)
Q Consensus       224 Vivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v-~~v~~~~s~~----~~~~~~~~p~  298 (417)
                      |.++|++  +++|||+++.+  .+.|.+|||+||+|||+++||+||++||||+++ .....++...    |........+
T Consensus         3 ~~~ii~~--~~~vLLv~~~~--~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~   78 (131)
T cd04686           3 VRAIILQ--GDKILLLYTKR--YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIFH   78 (131)
T ss_pred             EEEEEEE--CCEEEEEEEcC--CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCceeE
Confidence            4455565  58999999875  368999999999999999999999999999986 3344444332    2111111112


Q ss_pred             EEEEEEEEEEecc--cccCCcccc---cceEEEehhhHHH
Q 014873          299 QLMVGFYAYAKSF--EINVDKEEL---EDARWHSREDVKK  333 (417)
Q Consensus       299 ~l~i~f~a~~~~~--~~~~~~~E~---~~a~Wf~~del~~  333 (417)
                      .+.+.|.+.....  ...++..|.   ..++|++++++.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~  118 (131)
T cd04686          79 MISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIE  118 (131)
T ss_pred             EEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHH
Confidence            3445555555432  233333333   3589999999987

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.60  E-value=2.4e-14  Score=134.47  Aligned_cols=126  Identities=26%  Similarity=0.242  Sum_probs=91.6

Q ss_pred             cCCcCcEEEEEEEecCCCEEEEEEecCCCC-------CcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeec
Q 014873          217 YPRVDPVVIMLVIDRENDRVLLSRQSRFVP-------RMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW  289 (417)
Q Consensus       217 ypr~~pvVivlvi~~~~~kVLL~rr~~~~~-------g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~  289 (417)
                      +.+.+.|+ ++.+++++++|||+||.|++.       -.|++|+|.+|+||++++||+||+.||||+.+..+.+++.+.-
T Consensus        46 v~~~~~V~-il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~  124 (202)
T PRK10729         46 FERGHAAV-LLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLA  124 (202)
T ss_pred             EEcCCeEE-EEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEc
Confidence            44445544 445555467999999998765       3689999999999999999999999999999988887765532


Q ss_pred             CCCCCCCCcEEEEEEEEEEec---cc--ccCCcccccceEEEehhhHHHHhhhhhHHHHHHH
Q 014873          290 PVGPNSMPCQLMVGFYAYAKS---FE--INVDKEELEDARWHSREDVKKALTFAEYIKAQRT  346 (417)
Q Consensus       290 ~~~~~~~p~~l~i~f~a~~~~---~~--~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~  346 (417)
                      ..+   +....+..|++....   ..  ...+++|..++.|++++++.+++..+.+.++...
T Consensus       125 spg---~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~d~~ti  183 (202)
T PRK10729        125 SPG---GTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNAASV  183 (202)
T ss_pred             CCC---cCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCCCCcHHHH
Confidence            222   334556666666421   11  2335567778999999999999988877665443

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.59  E-value=1.8e-14  Score=123.53  Aligned_cols=101  Identities=22%  Similarity=0.319  Sum_probs=71.7

Q ss_pred             EEEEecCCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEE-
Q 014873          226 MLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV-  302 (417)
Q Consensus       226 vlvi~~~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i-  302 (417)
                      ++|.+ ++++|||+||..  ..+|+|++|||++++||++++|+.||++||||+++....+++...+.+..    ..+.+ 
T Consensus         9 ~ii~~-~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~----~~~~~~   83 (129)
T PRK10776          9 GIIRN-PNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPD----RHITLW   83 (129)
T ss_pred             EEEEC-CCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCC----cEEEEE
Confidence            33444 467999999975  34789999999999999999999999999999987666655555444421    22333 


Q ss_pred             EEEEEEecccccCCcccccceEEEehhhHHH
Q 014873          303 GFYAYAKSFEINVDKEELEDARWHSREDVKK  333 (417)
Q Consensus       303 ~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~  333 (417)
                      .|.+......  ....|..+++|+++++++.
T Consensus        84 ~~~~~~~~~~--~~~~e~~~~~W~~~~~l~~  112 (129)
T PRK10776         84 FWLVESWEGE--PWGKEGQPGRWVSQVALNA  112 (129)
T ss_pred             EEEEEEECCc--cCCccCCccEEecHHHCcc
Confidence            3333322222  2345778899999999987

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.59  E-value=1.7e-14  Score=125.54  Aligned_cols=105  Identities=24%  Similarity=0.294  Sum_probs=73.7

Q ss_pred             CCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEec
Q 014873          233 NDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKS  310 (417)
Q Consensus       233 ~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~  310 (417)
                      +++|||+||.+  ...|+|++|||++|+|||+++|+.||++||||+++....+++...+.+..   ....+..|.+....
T Consensus        14 ~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~   90 (135)
T PRK10546         14 DGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSG---RRIHLHAWHVPDFH   90 (135)
T ss_pred             CCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCC---cEEEEEEEEEEEec
Confidence            68999999864  35689999999999999999999999999999998766666555554321   11223344443332


Q ss_pred             ccccCCcccccceEEEehhhHHHHhhhhhHHH
Q 014873          311 FEINVDKEELEDARWHSREDVKKALTFAEYIK  342 (417)
Q Consensus       311 ~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~  342 (417)
                      ++.  ...|..+++|++++++.++.......+
T Consensus        91 ~~~--~~~e~~~~~W~~~~el~~~~~~~~~~~  120 (135)
T PRK10546         91 GEL--QAHEHQALVWCTPEEALRYPLAPADIP  120 (135)
T ss_pred             Ccc--cccccceeEEcCHHHcccCCCCcCcHH
Confidence            222  235678899999999998533333333

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.59  E-value=1.7e-14  Score=133.71  Aligned_cols=118  Identities=25%  Similarity=0.216  Sum_probs=87.6

Q ss_pred             EEEEEEEecCCCEEEEEEecCCC-------CCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC
Q 014873          223 VVIMLVIDRENDRVLLSRQSRFV-------PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS  295 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~~~-------~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~  295 (417)
                      +|.+++++.++++|||+|+.|++       +..|.+|||++|+||++++||+||++||||+.+..+.+++......+   
T Consensus        46 ~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g---  122 (185)
T TIGR00052        46 AAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSPG---  122 (185)
T ss_pred             eEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCCC---
Confidence            44555565556899999998742       45789999999999999999999999999999998888776643322   


Q ss_pred             CCcEEEEEEEEEEeccc----ccCCcccccceEEEehhhHHHHhhhhhHHHH
Q 014873          296 MPCQLMVGFYAYAKSFE----INVDKEELEDARWHSREDVKKALTFAEYIKA  343 (417)
Q Consensus       296 ~p~~l~i~f~a~~~~~~----~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a  343 (417)
                      .....+..|++......    ...+++|..+..|++++++.+++..+.+.++
T Consensus       123 ~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~i~d~  174 (185)
T TIGR00052       123 GVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGKIDNG  174 (185)
T ss_pred             CCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCCCCCH
Confidence            23456667777654321    1223456667999999999999887766544

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.58  E-value=1e-14  Score=135.70  Aligned_cols=113  Identities=17%  Similarity=0.167  Sum_probs=80.6

Q ss_pred             CcEEEEEEEecCCCEEEEEEecC---CCCCcEEeeeeeccCC-CCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC
Q 014873          221 DPVVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPG-ESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM  296 (417)
Q Consensus       221 ~pvVivlvi~~~~~kVLL~rr~~---~~~g~WslPgG~VE~G-EtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~  296 (417)
                      ..+|++.++..++++|||.||..   .+.|.|+||||++|+| |++++||+||++||||+.+..+.++++....+....+
T Consensus        31 ~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~  110 (190)
T PRK10707         31 QAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTGY  110 (190)
T ss_pred             CeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCCc
Confidence            44555555544456999999763   4678999999999985 6899999999999999999999988887532222222


Q ss_pred             CcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHh
Q 014873          297 PCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKAL  335 (417)
Q Consensus       297 p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L  335 (417)
                      ....++++.  ........+++|..++.|++++++.++.
T Consensus       111 ~~~~~v~~~--~~~~~~~~d~~Ev~~v~~vpl~e~~~~~  147 (190)
T PRK10707        111 QVTPVVGII--PPDLPYRANEDEVAAVFEMPLAEALHLG  147 (190)
T ss_pred             EEEEEEEEE--CCCCCCCCChhhhheEEEEeHHHHhCcc
Confidence            222222222  1223455677899999999999998854

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.58  E-value=3e-14  Score=143.76  Aligned_cols=123  Identities=25%  Similarity=0.335  Sum_probs=83.5

Q ss_pred             cccCCcCcEEEEEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEE----eec
Q 014873          215 RIYPRVDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS----QPW  289 (417)
Q Consensus       215 ~~ypr~~pvVivlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s----~~~  289 (417)
                      .-||.+...|.++|+.  +++|||+||.. +.+|.|.+|||+||+|||+++||+||++||||+++....+.+.    +.+
T Consensus       197 ~~~~~~~vtv~avv~~--~g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f  274 (340)
T PRK05379        197 APYPPTFVTVDAVVVQ--SGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVF  274 (340)
T ss_pred             cCCCCcceEEEEEEEE--CCEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEE
Confidence            3466655455455554  57999999985 4578999999999999999999999999999998754332221    111


Q ss_pred             CCCCCCC--CcEEEEEEEEEEeccc-c-cCCcccccceEEEehhhHHHH---hhhhhH
Q 014873          290 PVGPNSM--PCQLMVGFYAYAKSFE-I-NVDKEELEDARWHSREDVKKA---LTFAEY  340 (417)
Q Consensus       290 ~~~~~~~--p~~l~i~f~a~~~~~~-~-~~~~~E~~~a~Wf~~del~~~---L~~~~~  340 (417)
                      . .+.+.  .+.+++.|++....+. . ....+|..+++||+++++..+   +.++|.
T Consensus       275 ~-~p~r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~~~~~dh~  331 (340)
T PRK05379        275 D-HPGRSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAMRDRMFEDHF  331 (340)
T ss_pred             c-CCCCCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhhhhhhhhHHH
Confidence            1 12211  2356677777655332 1 123578899999999999873   444444

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.57  E-value=1.9e-14  Score=129.81  Aligned_cols=110  Identities=26%  Similarity=0.395  Sum_probs=76.8

Q ss_pred             cEEEEEEEecCCCEEEEEEecC---CCCCcEEee-eeeccCCCCHHHHHHHHHHHHhCCeeccEE--EEEEeecCCC-CC
Q 014873          222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPGESLEEAVRRETWEETGIEVGEVV--YHTSQPWPVG-PN  294 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~---~~~g~WslP-gG~VE~GEtleeAa~REv~EEtGl~v~~v~--~~~s~~~~~~-~~  294 (417)
                      .+|.++|++. +++|||+||+.   ..+|+|++| ||+++.||  .+||+||++|||||++..+.  .+....+... ..
T Consensus        28 ~~v~v~v~~~-~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~~  104 (158)
T TIGR02150        28 RAFSVFLFNE-EGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRARDAW  104 (158)
T ss_pred             EEEEEEEEcC-CCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEecCC
Confidence            3455666664 68999999984   468999987 89999999  49999999999999886543  2222221111 11


Q ss_pred             CCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhh
Q 014873          295 SMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALT  336 (417)
Q Consensus       295 ~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~  336 (417)
                      . ...+...|.+.... .+.++.+|+.+++|++++++.+++.
T Consensus       105 g-~~~~~~~f~~~~~~-~~~~~~~Ev~~~~W~~~~el~~~~~  144 (158)
T TIGR02150       105 G-EHELCPVFFARAPV-PLNPNPEEVAEYRWVSLEELKEILK  144 (158)
T ss_pred             C-cEEEEEEEEEecCC-cccCChhHeeeEEEeCHHHHHHHHh
Confidence            1 12344555555433 4566667999999999999999765

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.56  E-value=5.1e-14  Score=119.13  Aligned_cols=105  Identities=28%  Similarity=0.387  Sum_probs=78.6

Q ss_pred             EEEEEEEecCCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEE
Q 014873          223 VVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL  300 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l  300 (417)
                      ++++++++ +++++||++|.+  ..+|+|++|||+++.+|++++||.||+.||||+.+....+++...+.+..   ....
T Consensus         3 ~~~~~i~~-~~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~---~~~~   78 (124)
T cd03425           3 VVAAIIID-DDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPD---KRVT   78 (124)
T ss_pred             EEEEEEEC-CCCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCC---CeEE
Confidence            34445555 358999999875  35889999999999999999999999999999998777777766655421   2344


Q ss_pred             EEEEEEEEecccccCCcccccceEEEehhhHHH
Q 014873          301 MVGFYAYAKSFEINVDKEELEDARWHSREDVKK  333 (417)
Q Consensus       301 ~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~  333 (417)
                      +..|.+.......  ...|..+++|++++++.+
T Consensus        79 ~~~~~~~~~~~~~--~~~e~~~~~W~~~~el~~  109 (124)
T cd03425          79 LHVFLVELWSGEP--QLLEHQELRWVPPEELDD  109 (124)
T ss_pred             EEEEEEeeeCCCc--ccccCceEEEeeHHHccc
Confidence            5555555443332  246788999999999987

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.55  E-value=7e-14  Score=120.51  Aligned_cols=100  Identities=25%  Similarity=0.320  Sum_probs=66.3

Q ss_pred             CcEEEEEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeec--cEEEEEEeecCCCCCCCC
Q 014873          221 DPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG--EVVYHTSQPWPVGPNSMP  297 (417)
Q Consensus       221 ~pvVivlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~--~v~~~~s~~~~~~~~~~p  297 (417)
                      -+++++++... + ++||++|.. ...|.|.+|||+||+|||+++||+||++||||+++.  .+.++..+.++     ..
T Consensus         4 ~~~av~vl~~~-~-~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~l~~~~~~~~~-----~~   76 (118)
T cd04674           4 LPVVVALLPVD-D-GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDPADIRLFDVRSAP-----DG   76 (118)
T ss_pred             cEEEEEEEEEC-C-CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEEecC-----CC
Confidence            34555555553 3 466666654 456899999999999999999999999999999875  34445555443     23


Q ss_pred             cEEEEEEEEEEecccccCC--cccccceEEEe
Q 014873          298 CQLMVGFYAYAKSFEINVD--KEELEDARWHS  327 (417)
Q Consensus       298 ~~l~i~f~a~~~~~~~~~~--~~E~~~a~Wf~  327 (417)
                      ..++++|.+..........  ..|..++.|+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~  108 (118)
T cd04674          77 TLLVFGLLPERRAADLPPFEPTDETTERAVVT  108 (118)
T ss_pred             eEEEEEEEeccccccCCCCCCCcceeeEEEcc
Confidence            4567777766555444332  34555544443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.53  E-value=5.8e-14  Score=129.08  Aligned_cols=114  Identities=21%  Similarity=0.175  Sum_probs=79.3

Q ss_pred             EEEEecC-CCEEEEEEecC---CCCCcEE-eeeeeccCCCCHHHHHHHHHHHHhCCeecc---EEEEEEeecCC--CCCC
Q 014873          226 MLVIDRE-NDRVLLSRQSR---FVPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEVGE---VVYHTSQPWPV--GPNS  295 (417)
Q Consensus       226 vlvi~~~-~~kVLL~rr~~---~~~g~Ws-lPgG~VE~GEtleeAa~REv~EEtGl~v~~---v~~~~s~~~~~--~~~~  295 (417)
                      +++.+.+ +++|+++||+.   .++|+|+ +|||+++.|||+++||+||++||||+++..   +.+++...+.+  ....
T Consensus        39 ~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~  118 (180)
T cd03676          39 GYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGG  118 (180)
T ss_pred             EEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCc
Confidence            3444442 38999999984   4789995 999999999999999999999999998764   33443322221  1111


Q ss_pred             CCcEEEEEEEEEEecc-cccCCcccccceEEEehhhHHHHhhhhh
Q 014873          296 MPCQLMVGFYAYAKSF-EINVDKEELEDARWHSREDVKKALTFAE  339 (417)
Q Consensus       296 ~p~~l~i~f~a~~~~~-~~~~~~~E~~~a~Wf~~del~~~L~~~~  339 (417)
                      ....+...|.+..... .+..+++|+.++.|++++|+.+++..+.
T Consensus       119 ~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l~~g~  163 (180)
T cd03676         119 LQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRALKEGE  163 (180)
T ss_pred             EeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHHHcCC
Confidence            2223444454443222 3455678999999999999999876543

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.50  E-value=2.5e-13  Score=113.70  Aligned_cols=108  Identities=28%  Similarity=0.400  Sum_probs=76.4

Q ss_pred             EEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEE
Q 014873          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG  303 (417)
Q Consensus       224 Vivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~  303 (417)
                      +.+++++. +++|||++|.+.+.|+|.+|||+++.||++.++|+||++||+|+.+....+.......... ......+..
T Consensus         3 ~~~i~~~~-~~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~-~~~~~~~~~   80 (123)
T cd02883           3 VGAVILDE-DGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPD-EGEHAVVFV   80 (123)
T ss_pred             eEEEEECC-CCCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccC-CCceEEEEE
Confidence            44555553 4899999988556799999999999999999999999999999987543333333222111 112355666


Q ss_pred             EEEEEeccccc-CCcccccceEEEehhhHHH
Q 014873          304 FYAYAKSFEIN-VDKEELEDARWHSREDVKK  333 (417)
Q Consensus       304 f~a~~~~~~~~-~~~~E~~~a~Wf~~del~~  333 (417)
                      |.+........ .+..|..+.+|++++++.+
T Consensus        81 ~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~  111 (123)
T cd02883          81 FLARLVGGEPTLLPPDEISEVRWVTLDELPA  111 (123)
T ss_pred             EEEEeCCCCcCCCCCCccceEEEEcHHHCcc
Confidence            66665543332 3457888999999999886

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.50  E-value=3.5e-13  Score=116.13  Aligned_cols=99  Identities=28%  Similarity=0.419  Sum_probs=75.9

Q ss_pred             EEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEE
Q 014873          225 IMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGF  304 (417)
Q Consensus       225 ivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f  304 (417)
                      ++++++  ++++||+++.   .+.|.+|||++|+||++++||+||++||||+.+..+.+++.+......   .......|
T Consensus         4 ~vi~~~--~~~vLl~~~~---~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~---~~~~~~~y   75 (118)
T cd04665           4 LVICFY--DDGLLLVRHK---DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFE---SGFETLVY   75 (118)
T ss_pred             EEEEEE--CCEEEEEEeC---CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCC---CcEEEEEE
Confidence            344444  5899999986   468999999999999999999999999999999988888877544321   23455667


Q ss_pred             EEEEecccccCCcccccceEEEehhhH
Q 014873          305 YAYAKSFEINVDKEELEDARWHSREDV  331 (417)
Q Consensus       305 ~a~~~~~~~~~~~~E~~~a~Wf~~del  331 (417)
                      ++............|+....||+.+..
T Consensus        76 ~a~~~~~~~~~~~~E~~~~~~~~~~~~  102 (118)
T cd04665          76 PAVSAQLEEKASYLETDGPVLFKNEPE  102 (118)
T ss_pred             EEEEEecccccccccccCcEEeccCCc
Confidence            777665444334589999999986544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>TIGR00586 mutt mutator mutT protein

Probab=99.49  E-value=4.4e-13  Score=115.11  Aligned_cols=106  Identities=20%  Similarity=0.162  Sum_probs=72.5

Q ss_pred             EEEEecCCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEE
Q 014873          226 MLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG  303 (417)
Q Consensus       226 vlvi~~~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~  303 (417)
                      +++++ ++++|||.||..  ...|+|++|||.++.|||+++|++||+.||||+++....+++...+.++.   ....+..
T Consensus         9 ~ii~~-~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~---~~~~~~~   84 (128)
T TIGR00586         9 GIIRN-ENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPR---HITLWFW   84 (128)
T ss_pred             EEEEC-CCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCC---cEEEEEE
Confidence            33434 367999999974  45789999999999999999999999999999987655555544443321   1223333


Q ss_pred             EEEEEecccccCCcccccceEEEehhhHHHHhhhh
Q 014873          304 FYAYAKSFEINVDKEELEDARWHSREDVKKALTFA  338 (417)
Q Consensus       304 f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~  338 (417)
                      |.+.......  ...+..+++|++++++.+ +.++
T Consensus        85 ~~~~~~~~~~--~~~~~~~~~W~~~~~l~~-~~~p  116 (128)
T TIGR00586        85 LLERWEGGPP--GKEGQPEEWWVLVGLLAD-DFFP  116 (128)
T ss_pred             EEEEEcCCCc--CcccccccEEeCHHHCCc-cCCC
Confidence            3333332222  234567889999999998 4444

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.48  E-value=6e-13  Score=123.95  Aligned_cols=118  Identities=22%  Similarity=0.180  Sum_probs=87.0

Q ss_pred             EEEEEEEecCCCEEEEEEecCCCC------C--cEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCC
Q 014873          223 VVIMLVIDRENDRVLLSRQSRFVP------R--MWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPN  294 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~~~~------g--~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~  294 (417)
                      +|++++++.++++|+|+||.|++.      +  .|++|||.+|+| ++++||+||+.||||+.+..+.++++..-..+  
T Consensus        47 ~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~spG--  123 (191)
T PRK15009         47 GATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSPG--  123 (191)
T ss_pred             EEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCCc--
Confidence            444555665578999999998653      3  688999999976 69999999999999999999988876532222  


Q ss_pred             CCCcEEEEEEEEEEec----ccccCCcccccceEEEehhhHHHHhhhhhHHHHH
Q 014873          295 SMPCQLMVGFYAYAKS----FEINVDKEELEDARWHSREDVKKALTFAEYIKAQ  344 (417)
Q Consensus       295 ~~p~~l~i~f~a~~~~----~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~  344 (417)
                       +....+..|++....    .....+++|..++.|++++++.+++..+.+.++.
T Consensus       124 -~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~i~da~  176 (191)
T PRK15009        124 -GVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGK  176 (191)
T ss_pred             -ccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCCCCcHH
Confidence             334566667776431    1122346777889999999999998877766553

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.47  E-value=2.9e-13  Score=118.90  Aligned_cols=108  Identities=31%  Similarity=0.330  Sum_probs=71.0

Q ss_pred             EEEEEEecCCCEEEEEEecCC---CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCee-ccEEEEEEee--cCCCCCCCC
Q 014873          224 VIMLVIDRENDRVLLSRQSRF---VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV-GEVVYHTSQP--WPVGPNSMP  297 (417)
Q Consensus       224 Vivlvi~~~~~kVLL~rr~~~---~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v-~~v~~~~s~~--~~~~~~~~p  297 (417)
                      +-+++++. +++|||+|+.+.   ..+.|.+|||+|+.||++++|+.||++||||+.+ .....+....  +.+... ..
T Consensus         3 ~~~~i~~~-~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~-~~   80 (133)
T cd04685           3 ARVVLLDP-DDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGV-DG   80 (133)
T ss_pred             EEEEEEcC-CCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCc-cc
Confidence            34555554 689999998753   5679999999999999999999999999999987 3222222221  111111 12


Q ss_pred             cEEEEEEEEEEecccccC---C---cccccceEEEehhhHHH
Q 014873          298 CQLMVGFYAYAKSFEINV---D---KEELEDARWHSREDVKK  333 (417)
Q Consensus       298 ~~l~i~f~a~~~~~~~~~---~---~~E~~~a~Wf~~del~~  333 (417)
                      +...+.|.+.....++..   .   ..++.+++|++++++.+
T Consensus        81 ~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~  122 (133)
T cd04685          81 RQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAA  122 (133)
T ss_pred             eeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhh
Confidence            244555555544322111   1   13456899999999987

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.44  E-value=1.2e-12  Score=113.82  Aligned_cols=105  Identities=21%  Similarity=0.134  Sum_probs=64.8

Q ss_pred             EEEEEEecCCCEEEEEEecC-----CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeec-cEEEEEEeecCCC-----
Q 014873          224 VIMLVIDRENDRVLLSRQSR-----FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG-EVVYHTSQPWPVG-----  292 (417)
Q Consensus       224 Vivlvi~~~~~kVLL~rr~~-----~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~-~v~~~~s~~~~~~-----  292 (417)
                      ++.+-.+.+..+|||++|..     ...+.|++|||+++.||++++||+||++||||+.+. .+..+.....+.+     
T Consensus         5 ~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~~~~~~l~~~~~~~~~~v~~   84 (126)
T cd04662           5 ILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVDGPFIDLGSLKQSGGKVVHA   84 (126)
T ss_pred             EEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcceeeEEeEEEEECCCCeEEEE
Confidence            34444444445799998732     346899999999999999999999999999999864 2222222211111     


Q ss_pred             ----CCC-CCcEEEEEEEEEEecccccCC-cccccceEEEeh
Q 014873          293 ----PNS-MPCQLMVGFYAYAKSFEINVD-KEELEDARWHSR  328 (417)
Q Consensus       293 ----~~~-~p~~l~i~f~a~~~~~~~~~~-~~E~~~a~Wf~~  328 (417)
                          .+. ......+.|.+....+..... .+|..+++||++
T Consensus        85 fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~  126 (126)
T cd04662          85 WAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI  126 (126)
T ss_pred             EEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence                000 011233344444333334443 489999999974

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.44  E-value=2.6e-12  Score=115.82  Aligned_cols=98  Identities=26%  Similarity=0.279  Sum_probs=75.4

Q ss_pred             CCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEeccc
Q 014873          233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFE  312 (417)
Q Consensus       233 ~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~~~  312 (417)
                      ++++||+++.+   ..|.+|||++|+|||+++||+||++||||+.+..+.+++.+....+   .....+..|++......
T Consensus        34 ~~~~LL~~~~~---~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~---~~~~~~~vf~A~~~~~~  107 (156)
T TIGR02705        34 KDQWLLTEHKR---RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGE---STDFVKDVYFAEVSALE  107 (156)
T ss_pred             CCEEEEEEEcC---CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCC---CcEEEEEEEEEEEeccc
Confidence            46899998874   4699999999999999999999999999999999998887643322   24567778888766333


Q ss_pred             ccCCccc-ccceEEEehhhHHHHhhhhh
Q 014873          313 INVDKEE-LEDARWHSREDVKKALTFAE  339 (417)
Q Consensus       313 ~~~~~~E-~~~a~Wf~~del~~~L~~~~  339 (417)
                        .. +| .+-..+++++++++++..+.
T Consensus       108 --~~-~e~~E~~~~~~~~~~~~~~~~g~  132 (156)
T TIGR02705       108 --SK-DDYLETKGPVLLQEIPDIIKADP  132 (156)
T ss_pred             --cC-CCceeeEeEEEHHHHHHHHhcCC
Confidence              22 44 44444899999999876654

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>PLN02709 nudix hydrolase

Probab=99.40  E-value=1.5e-12  Score=123.25  Aligned_cols=109  Identities=17%  Similarity=0.135  Sum_probs=78.6

Q ss_pred             cEEEEEEEec-----CCCEEEEEEecC---CCCCcEEeeeeeccCCC-CHHHHHHHHHHHHhCCeeccEEEEEEeecCCC
Q 014873          222 PVVIMLVIDR-----ENDRVLLSRQSR---FVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGIEVGEVVYHTSQPWPVG  292 (417)
Q Consensus       222 pvVivlvi~~-----~~~kVLL~rr~~---~~~g~WslPgG~VE~GE-tleeAa~REv~EEtGl~v~~v~~~~s~~~~~~  292 (417)
                      .+|++.++..     ++.+|||++|..   ..+|.|+||||++|+|| ++.+||+||++||+||....+..++..+-...
T Consensus        34 AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t  113 (222)
T PLN02709         34 SAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVN  113 (222)
T ss_pred             cEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeEC
Confidence            3455555542     245899999985   47899999999999975 79999999999999999988888776543322


Q ss_pred             CCCCCcEEEEEEEEEEe---cccccCCcccccceEEEehhhHHH
Q 014873          293 PNSMPCQLMVGFYAYAK---SFEINVDKEELEDARWHSREDVKK  333 (417)
Q Consensus       293 ~~~~p~~l~i~f~a~~~---~~~~~~~~~E~~~a~Wf~~del~~  333 (417)
                      ...   ....-|.+.+.   .....++++|++++.|++++++.+
T Consensus       114 ~sg---~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~  154 (222)
T PLN02709        114 KKG---MSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLK  154 (222)
T ss_pred             CCC---CEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhC
Confidence            222   22333344332   223446789999999999999875

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.38  E-value=3.6e-12  Score=117.96  Aligned_cols=108  Identities=14%  Similarity=0.158  Sum_probs=70.2

Q ss_pred             CEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEE----------------EEEEeecCCC-CCC-
Q 014873          234 DRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVV----------------YHTSQPWPVG-PNS-  295 (417)
Q Consensus       234 ~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~----------------~~~s~~~~~~-~~~-  295 (417)
                      .+||++||..  .|.|.||||+||+||++++|++||++||||+.+..+.                .+..+.-+.. +.+ 
T Consensus        49 l~vLl~~r~~--~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~vy~~~~~dpr~t  126 (186)
T cd03670          49 LQFVAIKRPD--SGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYVDDPRNT  126 (186)
T ss_pred             eEEEEEEeCC--CCcCcCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccEEEeccccCCCCC
Confidence            4788989864  6899999999999999999999999999976532110                0111110100 100 


Q ss_pred             C-CcEEEEEEEEEEeccc----ccC-CcccccceEEEehhhHHHHhhhhhHHHHH
Q 014873          296 M-PCQLMVGFYAYAKSFE----INV-DKEELEDARWHSREDVKKALTFAEYIKAQ  344 (417)
Q Consensus       296 ~-p~~l~i~f~a~~~~~~----~~~-~~~E~~~a~Wf~~del~~~L~~~~~~~a~  344 (417)
                      + -+...+.|.+....++    ..+ ..+|..+++||++++++. |.++|.....
T Consensus       127 d~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~-L~~dH~~Il~  180 (186)
T cd03670         127 DNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLP-LYANHSQFLK  180 (186)
T ss_pred             CcceEEEEEEEEEecCcccccccccCCCCchheeEEEEcccccc-cccCHHHHHH
Confidence            0 1235555554432211    222 346889999999999985 8888876553

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>PRK08999 hypothetical protein; Provisional

Probab=99.35  E-value=7.1e-12  Score=124.66  Aligned_cols=104  Identities=24%  Similarity=0.279  Sum_probs=73.2

Q ss_pred             EEEEEecCCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEE
Q 014873          225 IMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV  302 (417)
Q Consensus       225 ivlvi~~~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i  302 (417)
                      .+++++ .+++|||.||..  ...|+|++|||++|.||++++|+.||++||||+.+.....+....+.+...   ...+.
T Consensus         9 ~~vi~~-~~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~---~~~i~   84 (312)
T PRK08999          9 AGVIRD-ADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDK---RVRLD   84 (312)
T ss_pred             EEEEEC-CCCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCC---eEEEE
Confidence            333444 368999999874  457999999999999999999999999999999987666555555544211   12233


Q ss_pred             EEEEEEecccccCCcccccceEEEehhhHHHH
Q 014873          303 GFYAYAKSFEINVDKEELEDARWHSREDVKKA  334 (417)
Q Consensus       303 ~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~  334 (417)
                      .|.+......  ....|..+++|++++++.+.
T Consensus        85 ~y~~~~~~~~--~~~~e~~~~~Wv~~~el~~~  114 (312)
T PRK08999         85 VRRVTAWQGE--PHGREGQPLAWVAPDELAVY  114 (312)
T ss_pred             EEEEEEecCc--ccCccCCccEEecHHHcccC
Confidence            3333322222  23457788999999999873

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.23  E-value=1.7e-10  Score=111.31  Aligned_cols=113  Identities=16%  Similarity=0.358  Sum_probs=74.2

Q ss_pred             EEEEEEEecCCCEEEEEEecC---CCCCcEEee-eeeccCCCC-----------------HHHHHHHHHHHHhCCeecc-
Q 014873          223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPGES-----------------LEEAVRRETWEETGIEVGE-  280 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~---~~~g~WslP-gG~VE~GEt-----------------leeAa~REv~EEtGl~v~~-  280 (417)
                      ++.++|++. +++|||+||+.   .++|+|+.. +|++..||+                 ..+||+||++||+||.+.. 
T Consensus        58 a~~v~i~n~-~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~  136 (247)
T PLN02552         58 AFSVFLFNS-KYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDV  136 (247)
T ss_pred             EEEEEEEcC-CCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCcccc
Confidence            566677775 68999999983   578999755 455555422                 6799999999999998543 


Q ss_pred             ----EEEEEEeecCCCC------CCC--CcEEEEEEEEE-EecccccCCcccccceEEEehhhHHHHhh
Q 014873          281 ----VVYHTSQPWPVGP------NSM--PCQLMVGFYAY-AKSFEINVDKEELEDARWHSREDVKKALT  336 (417)
Q Consensus       281 ----v~~~~s~~~~~~~------~~~--p~~l~i~f~a~-~~~~~~~~~~~E~~~a~Wf~~del~~~L~  336 (417)
                          +.+++...+....      +..  ...+...|+.. ....++.++++|+.+++|++++++.+++.
T Consensus       137 ~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs~~el~~~~~  205 (247)
T PLN02552        137 PVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNREELKEMMR  205 (247)
T ss_pred             ccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEeHHHHHHHHh
Confidence                4555433322110      110  11222223322 22446788889999999999999998654

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.19  E-value=1.8e-10  Score=100.43  Aligned_cols=42  Identities=31%  Similarity=0.439  Sum_probs=36.7

Q ss_pred             CEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCee
Q 014873          234 DRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV  278 (417)
Q Consensus       234 ~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v  278 (417)
                      .+||+.|...   +.|.+|||+||+|||+++||+||++||||+++
T Consensus        14 ~~ll~~r~~~---~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~   55 (126)
T cd04663          14 LELLVFEHPL---AGFQIVKGTVEPGETPEAAALRELQEESGLPS   55 (126)
T ss_pred             EEEEEEEcCC---CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence            3777776543   56999999999999999999999999999997

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>PLN02791 Nudix hydrolase homolog

Probab=99.17  E-value=1.7e-10  Score=126.09  Aligned_cols=117  Identities=19%  Similarity=0.214  Sum_probs=82.7

Q ss_pred             CcEEEEEEEecCCCEEEEEEecC---CCCCcEEe-eeeeccCCCCHHHHHHHHHHHHhCCeec--cEEEEEEeecCC--C
Q 014873          221 DPVVIMLVIDRENDRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEVG--EVVYHTSQPWPV--G  292 (417)
Q Consensus       221 ~pvVivlvi~~~~~kVLL~rr~~---~~~g~Wsl-PgG~VE~GEtleeAa~REv~EEtGl~v~--~v~~~~s~~~~~--~  292 (417)
                      ..+|.++|++..+++|||+||+.   .++|.|++ +||+++.||+.++|++||+.||+||.+.  .+.+++...+..  .
T Consensus        32 HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~  111 (770)
T PLN02791         32 HRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVIN  111 (770)
T ss_pred             eEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeecc
Confidence            34677788876568999999984   57899997 7999999999999999999999999853  344444421111  1


Q ss_pred             CCC-CCcEEEEEEEEEEe----cccccCCcccccceEEEehhhHHHHhhh
Q 014873          293 PNS-MPCQLMVGFYAYAK----SFEINVDKEELEDARWHSREDVKKALTF  337 (417)
Q Consensus       293 ~~~-~p~~l~i~f~a~~~----~~~~~~~~~E~~~a~Wf~~del~~~L~~  337 (417)
                      ... ..+.+..+|++...    ..++.++++|+++++|++++|+.+++..
T Consensus       112 ~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l~~  161 (770)
T PLN02791        112 DGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSALAK  161 (770)
T ss_pred             CCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHHhc
Confidence            111 11233334444321    1246678899999999999999987654

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.17  E-value=2.9e-10  Score=97.11  Aligned_cols=112  Identities=31%  Similarity=0.391  Sum_probs=70.3

Q ss_pred             EEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHH-HHHHHHHHHhCCeec--cEEEEEEeecCCCCCCC--C
Q 014873          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEE-AVRRETWEETGIEVG--EVVYHTSQPWPVGPNSM--P  297 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtlee-Aa~REv~EEtGl~v~--~v~~~~s~~~~~~~~~~--p  297 (417)
                      ++.+++......+||+.++.... +.|.+|||.||.||+.++ ||+||++||||+.+.  ....++..+........  .
T Consensus        13 ~~~~~~~~~~~~~vl~~~~~~~~-~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   91 (161)
T COG0494          13 AVAVLVGRDGPGEVLLAQRRDDG-GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSVGG   91 (161)
T ss_pred             eEEEEEecCCCCEEeEEEccccC-CceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccccc
Confidence            44444444322789998887533 699999999999999988 999999999999987  56666655444322111  0


Q ss_pred             cEEEEEEEEEEe-cccccC--C---cccccceEEEehhhHHHHh
Q 014873          298 CQLMVGFYAYAK-SFEINV--D---KEELEDARWHSREDVKKAL  335 (417)
Q Consensus       298 ~~l~i~f~a~~~-~~~~~~--~---~~E~~~a~Wf~~del~~~L  335 (417)
                      ......+..... ......  .   ..|.....|++.+++....
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  135 (161)
T COG0494          92 REHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALV  135 (161)
T ss_pred             eEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHccccc
Confidence            111111111111 111111  1   2578999999999988743

>PLN03143 nudix hydrolase; Provisional

Probab=99.15  E-value=1.1e-09  Score=107.84  Aligned_cols=117  Identities=20%  Similarity=0.206  Sum_probs=73.4

Q ss_pred             ccCCcCcEEEEEEEecC-CCEEEEEEecCCCCC--cEEeeeeeccCC-CCHHHHHHHHHHHHhCCeec--cEEEEE----
Q 014873          216 IYPRVDPVVIMLVIDRE-NDRVLLSRQSRFVPR--MWSCIAGFIEPG-ESLEEAVRRETWEETGIEVG--EVVYHT----  285 (417)
Q Consensus       216 ~ypr~~pvVivlvi~~~-~~kVLL~rr~~~~~g--~WslPgG~VE~G-EtleeAa~REv~EEtGl~v~--~v~~~~----  285 (417)
                      .|.+...|+++++++.+ +.+|+|+||.|++.|  .|++|||.+|++ |++++||+||++||||+.+.  ++..+.    
T Consensus       124 v~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~  203 (291)
T PLN03143        124 VFARGPAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLD  203 (291)
T ss_pred             EEEcCCeEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccc
Confidence            34444444444444432 234999999986544  688999999984 89999999999999999863  454443    


Q ss_pred             ------EeecCCCCCCCCcEEEEEEEEEEeccc-----------ccCCcccccceEEEehhhHHHHhh
Q 014873          286 ------SQPWPVGPNSMPCQLMVGFYAYAKSFE-----------INVDKEELEDARWHSREDVKKALT  336 (417)
Q Consensus       286 ------s~~~~~~~~~~p~~l~i~f~a~~~~~~-----------~~~~~~E~~~a~Wf~~del~~~L~  336 (417)
                            ..+.+-    .....+..|++......           ...+++|..++.|++++++..++.
T Consensus       204 ~~~g~~v~pspG----~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~a  267 (291)
T PLN03143        204 PSTGCRMFPSPG----GCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTA  267 (291)
T ss_pred             cCcCceEEecCC----ccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHH
Confidence                  122211    11122333443322110           112456777899999999988764

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=99.07  E-value=1.1e-09  Score=96.01  Aligned_cols=111  Identities=27%  Similarity=0.303  Sum_probs=71.2

Q ss_pred             CEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC---CCCCCcEEEEEEEEEEec
Q 014873          234 DRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG---PNSMPCQLMVGFYAYAKS  310 (417)
Q Consensus       234 ~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~---~~~~p~~l~i~f~a~~~~  310 (417)
                      -+|||+...+ .+..|.+|+|.+|++|+..+||.||++||+|+.-...+.++.. |.+-   ....+..+|  |. ....
T Consensus        24 ieVLlvsSs~-~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~-~~~~~~~~~~~~k~~~--~~-l~v~   98 (145)
T KOG2839|consen   24 IEVLLVSSSK-KPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGF-EDFLSKKHRTKPKGVM--YV-LAVT   98 (145)
T ss_pred             eEEEEEecCC-CCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccch-hhccChhhccccccee--eh-hhhh
Confidence            3899998775 3457999999999999999999999999999986544433332 2211   111111222  11 1222


Q ss_pred             ccccC---CcccccceEEEehhhHHHHhhhhhHHHHHHHHHH
Q 014873          311 FEINV---DKEELEDARWHSREDVKKALTFAEYIKAQRTAAA  349 (417)
Q Consensus       311 ~~~~~---~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~  349 (417)
                      .++..   ...|..+.+|+.++|..+.+.+.....+...+.+
T Consensus        99 e~le~wp~~~~~~r~r~W~~ledA~~~~~~~~m~~al~e~~~  140 (145)
T KOG2839|consen   99 EELEDWPESEHEFREREWLKLEDAIELCQHKWMKAALEEFLQ  140 (145)
T ss_pred             hhcccChhhhcccceeEEeeHHHHHHHHhhHHHHHHHHHHHH
Confidence            22221   1345889999999999998775545554444433

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=98.98  E-value=1.6e-09  Score=101.91  Aligned_cols=122  Identities=23%  Similarity=0.237  Sum_probs=87.9

Q ss_pred             CCCcccCCcCcEEEEEEEec--CCCEEEEEEecC---CCCCcEEeeeeeccCCC-CHHHHHHHHHHHHhCCeeccEEEEE
Q 014873          212 CKKRIYPRVDPVVIMLVIDR--ENDRVLLSRQSR---FVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGIEVGEVVYHT  285 (417)
Q Consensus       212 C~~~~ypr~~pvVivlvi~~--~~~kVLL~rr~~---~~~g~WslPgG~VE~GE-tleeAa~REv~EEtGl~v~~v~~~~  285 (417)
                      |....+|+.+.+|++.+++.  ++.+|||.||.+   ...|.-++|||..|+.+ +-+++|.||.+||.|+....+.+++
T Consensus        34 ~~~~~~~~~~~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g  113 (246)
T KOG3069|consen   34 SETHDFPNRKAAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLG  113 (246)
T ss_pred             cccccCCCCCccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhh
Confidence            45566677777777777766  335899999985   46799999999999765 6778999999999999987666665


Q ss_pred             EeecCCCCCCCCcEEEEEEEEEEec-ccccCCcccccceEEEehhhHHH
Q 014873          286 SQPWPVGPNSMPCQLMVGFYAYAKS-FEINVDKEELEDARWHSREDVKK  333 (417)
Q Consensus       286 s~~~~~~~~~~p~~l~i~f~a~~~~-~~~~~~~~E~~~a~Wf~~del~~  333 (417)
                      ..+-.+........-+++|...... ....++..|++++.|++++++..
T Consensus       114 ~l~~~~~r~~~~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~  162 (246)
T KOG3069|consen  114 ALPPFVLRSGWSVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLL  162 (246)
T ss_pred             hccceeeccCcccceeEEEEecccccccccCCchheeeeeeeeHHHHhh
Confidence            5432222222223445666554322 44567789999999999999875

>PF09296 NUDIX-like: NADH pyrophosphatase-like rudimentary NUDIX domain; InterPro: IPR015375 This entry represents the N-terminal domain found in NADH pyrophosphatase

Probab=98.94  E-value=3e-09  Score=87.43  Aligned_cols=98  Identities=28%  Similarity=0.341  Sum_probs=54.5

Q ss_pred             CeEEEEEeCCceeeecCCCCCCCceeeccccchhhHHHhhhcCcCcccccEEEeeeeeCCCeeEEEEecCCCCccccccc
Q 014873           64 DFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFG  143 (417)
Q Consensus        64 ~~~~l~f~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Lg~~~~~~~~~~a~~~~~~~~~~~~~~  143 (417)
                      ++|+++|+++++|+...++.  .  .+......+..         ......+|||.. +++.+|||+|++..... ....
T Consensus         1 ~a~~~~~~~~~~lv~~~~~~--~--~~~~~~~~~~~---------~~~~~~~~LG~~-~gg~~~fa~~~~~~~~~-~~~~   65 (98)
T PF09296_consen    1 SARWLLFSGGRLLVKKDGGD--L--LLPPGDAAELG---------LPEEEAVFLGED-EGGQPCFAVDLSEEPDS-QLEL   65 (98)
T ss_dssp             -EEEEEEETTEEE-GG------G--S--EEEGGGGT----------TTSEEEEEEEE-TT-EEEEEEE---SS-------
T ss_pred             CEEEEEEECCEEEEecCccc--e--eecccchhhcc---------CCCCcEEEeeec-CCEeEEEEEEcCccccc-cccc
Confidence            48999999999999763321  1  12222222121         135678999986 33499999999876641 1112


Q ss_pred             ccccchhhhHHHHhhcchhhhhhHHHHHHHHHHHHHHhh
Q 014873          144 SKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEW  182 (417)
Q Consensus       144 ~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~A~~l~~W  182 (417)
                      ..+..|.+||+++..+      ++.+++++++|++|++|
T Consensus        66 ~~~~~~~~LR~~~~~l------~~~~~~l~a~A~~ll~W   98 (98)
T PF09296_consen   66 PEGFEFVDLRQLGGQL------PEEDAGLAARARQLLDW   98 (98)
T ss_dssp             -----EE-GGGGT-TS-------HHHHHHHHHHHHHHH-
T ss_pred             cccccchhHHHHHHcC------CHHHHHHHHHHHHHhcC
Confidence            4578899999998544      56899999999999999

Nitrate reductase inactivator (NRI) protein shares 51.1-68.3% of its amino acid sequence with three types of the nucleotide pyrophosphatase-like protein from Arabidopsis thaliana.; GO: 0016787 hydrolase activity; PDB: 1VK6_A 2GB5_A.

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=98.91  E-value=2.3e-08  Score=91.69  Aligned_cols=119  Identities=22%  Similarity=0.241  Sum_probs=75.4

Q ss_pred             ccCCcCcEEEEEEEecC-CCEEEEEEecCCCCCcE--EeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEee-cCC
Q 014873          216 IYPRVDPVVIMLVIDRE-NDRVLLSRQSRFVPRMW--SCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQP-WPV  291 (417)
Q Consensus       216 ~ypr~~pvVivlvi~~~-~~kVLL~rr~~~~~g~W--slPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~-~~~  291 (417)
                      .+-+.+.|.|..++..+ .-.|+|+++.|++-|.+  ++|+|-|+.||+++.||.||++||||+. +.+......- ...
T Consensus        69 ~ea~~dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~-gkv~~~s~~~f~DP  147 (225)
T KOG3041|consen   69 VEARADGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYK-GKVDMVSPTVFLDP  147 (225)
T ss_pred             ccccCCeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCcc-ceeeeccccEEcCC
Confidence            45566766666555542 23799999999888855  5999999999999999999999999998 4333221110 111


Q ss_pred             CCCCCCcEEEEEEEEEEe-ccc----ccCCcccccceEEEehhhHHHHhh
Q 014873          292 GPNSMPCQLMVGFYAYAK-SFE----INVDKEELEDARWHSREDVKKALT  336 (417)
Q Consensus       292 ~~~~~p~~l~i~f~a~~~-~~~----~~~~~~E~~~a~Wf~~del~~~L~  336 (417)
                      |-.. ...-++.+...-. .+.    ..+++.|..++.-++..++.+.+.
T Consensus       148 Gltn-~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~  196 (225)
T KOG3041|consen  148 GLTN-CNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRELA  196 (225)
T ss_pred             CCCC-CceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHHH
Confidence            2111 1122333322211 111    234567888899999999887543

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=98.74  E-value=2.2e-08  Score=90.37  Aligned_cols=122  Identities=25%  Similarity=0.423  Sum_probs=86.6

Q ss_pred             CCCcccCCcCcEEEEEEEecCCCEEEEEEec---CCCCCcEE-eeeeeccCCCCHHHHHHHHHHHHhCCeeccE------
Q 014873          212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQS---RFVPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEVGEV------  281 (417)
Q Consensus       212 C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~---~~~~g~Ws-lPgG~VE~GEtleeAa~REv~EEtGl~v~~v------  281 (417)
                      |....-|+..-+.-+++++. +|++||+||+   +-+++.|+ -..||--+||+.++|++|-+.+|+||++...      
T Consensus        24 ~Ht~d~~~LHrAFS~~lFne-~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il  102 (185)
T COG1443          24 AHTGDTPRLHRAFSSFLFNE-RGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEIL  102 (185)
T ss_pred             hhccccHHHHhhhheeEECC-CCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccc
Confidence            34444444444566788886 7999999998   36789998 6788888999999999999999999998621      


Q ss_pred             ---EEEEEeecCCCCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhh
Q 014873          282 ---VYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAE  339 (417)
Q Consensus       282 ---~~~~s~~~~~~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~  339 (417)
                         +|....+-..    ...-+..++++.... .+.++++|+.+++|++++++.+++..+.
T Consensus       103 ~rf~YrA~~~~~~----~E~Eic~V~~~~~~~-~~~~npdEV~~~~wv~~e~l~~~~~~~~  158 (185)
T COG1443         103 PRFRYRAADPDGI----VENEICPVLAARLDS-ALDPNPDEVMDYRWVSPEDLKEMVDATP  158 (185)
T ss_pred             cceEEeccCCCCc----ceeeeeeEEEEeecC-CCCCChHHhhheeccCHHHHHHhhcCCc
Confidence               2222211111    122344444454443 6778889999999999999999876543

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=98.58  E-value=7.6e-07  Score=74.75  Aligned_cols=89  Identities=16%  Similarity=0.205  Sum_probs=61.1

Q ss_pred             CCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEE-EEEEEEEEe
Q 014873          233 NDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL-MVGFYAYAK  309 (417)
Q Consensus       233 ~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l-~i~f~a~~~  309 (417)
                      ++++||.||..  ...|+|++|+|.++.+|+.+++..||+.||.++   ....++...+.++    ...+ +..|.+...
T Consensus        13 ~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~H~ft----h~~~~~~~~~~~~~   85 (118)
T cd03431          13 DGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL---SLEPLGTVKHTFT----HFRLTLHVYLARLE   85 (118)
T ss_pred             CCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc---ccccceeEEEecC----CeEEEEEEEEEEEe
Confidence            68999999973  568999999999999999999999999999764   1122333333332    1233 333444333


Q ss_pred             cccccCCcccccceEEEehhhHHH
Q 014873          310 SFEINVDKEELEDARWHSREDVKK  333 (417)
Q Consensus       310 ~~~~~~~~~E~~~a~Wf~~del~~  333 (417)
                      ...     .+..+.+|++++++.+
T Consensus        86 ~~~-----~~~~~~~W~~~eel~~  104 (118)
T cd03431          86 GDL-----LAPDEGRWVPLEELDE  104 (118)
T ss_pred             CCC-----cCccccEEccHHHHhh
Confidence            221     2456789999999987

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains

Probab=98.52  E-value=5.8e-08  Score=64.44  Aligned_cols=32  Identities=41%  Similarity=0.943  Sum_probs=23.0

Q ss_pred             hccCccccCCCcceeccCccceeecCCCCCCccc
Q 014873          184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIY  217 (417)
Q Consensus       184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~y  217 (417)
                      ++++||++||+++....+|+.++|+  +|+.++|
T Consensus         1 ~~~rfC~~CG~~t~~~~~g~~r~C~--~Cg~~~y   32 (32)
T PF09297_consen    1 RNHRFCGRCGAPTKPAPGGWARRCP--SCGHEHY   32 (32)
T ss_dssp             HTTSB-TTT--BEEE-SSSS-EEES--SSS-EE-
T ss_pred             CCCcccCcCCccccCCCCcCEeECC--CCcCEeC
Confidence            4789999999999999999999997  6999887

; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.

>PLN02839 nudix hydrolase

Probab=98.46  E-value=9.5e-07  Score=89.09  Aligned_cols=111  Identities=16%  Similarity=0.082  Sum_probs=74.0

Q ss_pred             EEEecCCCEEEEEEecC---CCCCcEE-eeeeeccCCCCHHHHHHHHHHHHhCCeec---cEEEEEEeecCCCC--CCCC
Q 014873          227 LVIDRENDRVLLSRQSR---FVPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEVG---EVVYHTSQPWPVGP--NSMP  297 (417)
Q Consensus       227 lvi~~~~~kVLL~rr~~---~~~g~Ws-lPgG~VE~GEtleeAa~REv~EEtGl~v~---~v~~~~s~~~~~~~--~~~p  297 (417)
                      ++..+.+.++.+.||..   .++|+|+ +.||.|..||++.++++||.+||+||...   .+...+...|....  .-.+
T Consensus       211 yv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~  290 (372)
T PLN02839        211 YVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKR  290 (372)
T ss_pred             EEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCcccc
Confidence            33333346799999984   5789998 88999999999999999999999999743   44444444433211  1112


Q ss_pred             cEEEEEEEEEEecc-cccCCcccccceEEEehhhHHHHhhhh
Q 014873          298 CQLMVGFYAYAKSF-EINVDKEELEDARWHSREDVKKALTFA  338 (417)
Q Consensus       298 ~~l~i~f~a~~~~~-~~~~~~~E~~~a~Wf~~del~~~L~~~  338 (417)
                      ..+. .|-.....+ ..+.++.|++++.+++++|+.+.+..+
T Consensus       291 evly-~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~l~~~  331 (372)
T PLN02839        291 DVLF-CYDLELPQDFVPKNQDGEVESFKLIPVAQVANVIRKT  331 (372)
T ss_pred             CEEE-EeeeecCCccccCCCccceeEEEEecHHHHHHHHHcC
Confidence            2222 222222221 124567999999999999999877643

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.43  E-value=9.2e-07  Score=75.94  Aligned_cols=125  Identities=22%  Similarity=0.215  Sum_probs=74.0

Q ss_pred             CCcccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeecc-EEEEEEeecCC
Q 014873          213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE-VVYHTSQPWPV  291 (417)
Q Consensus       213 ~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~-v~~~~s~~~~~  291 (417)
                      |...|..-+.++.++++++ ++-+...|    ..|.|++|.|.+..||.++.||+||.-||+||.++- ...+++..-+ 
T Consensus         7 GvLlYR~~aG~v~VLLvHP-GGPFWa~k----D~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~kQ~-   80 (161)
T COG4119           7 GVLLYRARAGVVDVLLVHP-GGPFWAGK----DDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSLKQS-   80 (161)
T ss_pred             eeEEEEecCCCEEEEEecC-CCCccccC----CCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhhhccC-
Confidence            4444544444454555443 33333322    248999999999999999999999999999999852 2233332111 


Q ss_pred             CCCCCCcEEEEEEEEEE----------------ecccccCC-cccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHH
Q 014873          292 GPNSMPCQLMVGFYAYA----------------KSFEINVD-KEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQ  353 (417)
Q Consensus       292 ~~~~~p~~l~i~f~a~~----------------~~~~~~~~-~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~  353 (417)
                           -..+.++|-...                ....-.+. -.|++.+.||++.+....+     .+.++.++.+|..
T Consensus        81 -----GGKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~Ki-----l~gQRpfldrL~a  149 (161)
T COG4119          81 -----GGKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEARTKI-----LKGQRPFLDRLMA  149 (161)
T ss_pred             -----CCcEEEEEeeeeeeehhhhhcceeeeecCCCCCccccCcccccccceecHHHHhHH-----hhccchHHHHHHH
Confidence                 112333333221                11111111 2588999999999988643     2345556666543

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.40  E-value=1.5e-07  Score=92.02  Aligned_cols=111  Identities=23%  Similarity=0.300  Sum_probs=72.0

Q ss_pred             cCcEEEEEEEecCCCEEEEEEecC---CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEE--EEee-cCCCC
Q 014873          220 VDPVVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYH--TSQP-WPVGP  293 (417)
Q Consensus       220 ~~pvVivlvi~~~~~kVLL~rr~~---~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~--~s~~-~~~~~  293 (417)
                      ....|.++|++. +++||+++...   ...|.|-+|+|.|++||++-+++.||++||||++...+..+  .... -.++-
T Consensus       114 h~vgvg~~V~n~-~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVla~r~~H~~~~~~  192 (295)
T KOG0648|consen  114 HRVGVGAFVLNK-KKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVLAFRRAHNATFGL  192 (295)
T ss_pred             hheeeeeeEecC-CceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhHHHHHhhhcchhhc
Confidence            345667778776 47999987642   24689999999999999999999999999999965322211  1111 11110


Q ss_pred             CCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHH
Q 014873          294 NSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKK  333 (417)
Q Consensus       294 ~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~  333 (417)
                        ....+.+.+.....+-.++....|++.+.|++.++...
T Consensus       193 --~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~  230 (295)
T KOG0648|consen  193 --IKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVS  230 (295)
T ss_pred             --ccccceeEEEeeccccccchhHHHHHHHhcccHHHhhc
Confidence              01122222222223344555678899999999998776

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=97.64  E-value=2.6e-05  Score=52.36  Aligned_cols=29  Identities=24%  Similarity=0.637  Sum_probs=17.5

Q ss_pred             CccccCCCcceec----cCccceeecCCCCCCccc
Q 014873          187 RFCGHCGEKTIPK----EAGKLKQCSNASCKKRIY  217 (417)
Q Consensus       187 ~fC~~CG~~~~~~----~~g~~~~C~~~~C~~~~y  217 (417)
                      +|||.||+++...    +...|.+|+  +|+++||
T Consensus         1 kfC~~CG~~l~~~ip~gd~r~R~vC~--~Cg~IhY   33 (34)
T PF14803_consen    1 KFCPQCGGPLERRIPEGDDRERLVCP--ACGFIHY   33 (34)
T ss_dssp             -B-TTT--B-EEE--TT-SS-EEEET--TTTEEE-
T ss_pred             CccccccChhhhhcCCCCCccceECC--CCCCEEe
Confidence            6999999999763    334789997  6999998

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=97.62  E-value=0.00016  Score=61.29  Aligned_cols=97  Identities=16%  Similarity=0.214  Sum_probs=53.8

Q ss_pred             EEecCCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEE
Q 014873          228 VIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFY  305 (417)
Q Consensus       228 vi~~~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~  305 (417)
                      +++ .++++||.||..  ...|+|++|.--++...+ .+.+.+.+.+..|+.+.....++...+.|+.   ....+..|.
T Consensus         4 i~~-~~~~~Ll~kRp~~gll~GLwefP~~e~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH---~~~~~~~~~   78 (114)
T PF14815_consen    4 IIR-SQGRVLLEKRPEKGLLAGLWEFPLIESDEEDD-EEELEEWLEEQLGLSIRSVEPLGTVKHVFSH---RRWTIHVYE   78 (114)
T ss_dssp             EEE-TTSEEEEEE--SSSTTTT-EE--EEE-SSS-C-HHHHHHHTCCSSS-EEEE-S-SEEEEEE-SS---EEEEEEEEE
T ss_pred             EEE-eCCEEEEEECCCCChhhcCcccCEeCccCCCC-HHHHHHHHHHHcCCChhhheecCcEEEEccc---eEEEEEEEE
Confidence            344 479999999984  578999999988874333 6666667777888876544455555554431   123344455


Q ss_pred             EEEecccccCCcccccceEEEehhhHHH
Q 014873          306 AYAKSFEINVDKEELEDARWHSREDVKK  333 (417)
Q Consensus       306 a~~~~~~~~~~~~E~~~a~Wf~~del~~  333 (417)
                      +.+......    +..+.+|++.+++.+
T Consensus        79 ~~~~~~~~~----~~~~~~W~~~~~l~~  102 (114)
T PF14815_consen   79 VEVSADPPA----EPEEGQWVSLEELDQ  102 (114)
T ss_dssp             EEEE-SS--------TTEEEEEGGGGGG
T ss_pred             EEecCCCCC----CCCCcEEEEHHHHhh
Confidence            545433221    467899999999986

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.90  E-value=0.0027  Score=59.01  Aligned_cols=114  Identities=19%  Similarity=0.398  Sum_probs=72.8

Q ss_pred             cEEEEEEEecCCCEEEEEEecC---CCCCcEE--e-------eeeecc-CCCCHHHHHHHHHHHHhCCeec-----cEEE
Q 014873          222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWS--C-------IAGFIE-PGESLEEAVRRETWEETGIEVG-----EVVY  283 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~---~~~g~Ws--l-------PgG~VE-~GEtleeAa~REv~EEtGl~v~-----~v~~  283 (417)
                      -+.-|++++. ++++||++|+.   .+++.|+  +       |+.--+ .+..+..||+|-+.-|+||...     ++.|
T Consensus        53 RaFSVFlFns-~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~  131 (225)
T KOG0142|consen   53 RAFSVFLFNS-KNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNF  131 (225)
T ss_pred             heeeEEEecC-cchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHccc
Confidence            3455677775 78999999884   4677777  1       222111 2335789999999999999754     4556


Q ss_pred             EEEeecCCCCCCCCcEEEEEEEEEE-ecccccCCcccccceEEEehhhHHHHhh
Q 014873          284 HTSQPWPVGPNSMPCQLMVGFYAYA-KSFEINVDKEELEDARWHSREDVKKALT  336 (417)
Q Consensus       284 ~~s~~~~~~~~~~p~~l~i~f~a~~-~~~~~~~~~~E~~~a~Wf~~del~~~L~  336 (417)
                      +....|--.+++.-.-.-+-|.... ..-.++++++|+.+++|++.+|+.++++
T Consensus       132 ltrihYkA~sdg~wGEhEiDYiL~~~~~~~~nPnpnEv~e~ryvs~eelkel~~  185 (225)
T KOG0142|consen  132 LTRIHYKAPSDGIWGEHEIDYILFLVKDVTLNPNPNEVSEIRYVSREELKELVA  185 (225)
T ss_pred             ceeeeeecCCCCCcccceeeEEEEEeccCCCCCChhhhhHhheecHHHHHHHHh
Confidence            6665543222221112223333222 2345666779999999999999999776

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=96.77  E-value=0.0019  Score=60.82  Aligned_cols=39  Identities=23%  Similarity=0.475  Sum_probs=33.6

Q ss_pred             EEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhC
Q 014873          235 RVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETG  275 (417)
Q Consensus       235 kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtG  275 (417)
                      +++.++|+  ..|.|.+|||.||+||-+-.+.+||+.||.=
T Consensus       140 e~vavkr~--d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~  178 (275)
T KOG4195|consen  140 EFVAVKRP--DNGEWAIPGGMVDPGEKVSATLKREFGEEAM  178 (275)
T ss_pred             EEEEEecC--CCCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence            45566665  4789999999999999999999999999963

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=95.97  E-value=0.067  Score=48.30  Aligned_cols=100  Identities=22%  Similarity=0.322  Sum_probs=64.2

Q ss_pred             CCEEEEEEecCC-----CCCcEEe-eeeeccCCC---CHHHH----HHHHHHHHhCCe---eccEEEEEEeecCCCCCCC
Q 014873          233 NDRVLLSRQSRF-----VPRMWSC-IAGFIEPGE---SLEEA----VRRETWEETGIE---VGEVVYHTSQPWPVGPNSM  296 (417)
Q Consensus       233 ~~kVLL~rr~~~-----~~g~Wsl-PgG~VE~GE---tleeA----a~REv~EEtGl~---v~~v~~~~s~~~~~~~~~~  296 (417)
                      .++||+-+|-.-     -.+.+++ .|||+..++   +.++-    +.||+.||+++.   ...+.|++-..-....-+ 
T Consensus        71 edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd~neVg-  149 (203)
T COG4112          71 EDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDDTNEVG-  149 (203)
T ss_pred             CCEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCCCcccc-
Confidence            569999988631     1256775 589998765   33332    679999999997   456778876643311000 


Q ss_pred             CcEEEEEEEEEEecccccCCcccccceEEEehhhHHH
Q 014873          297 PCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKK  333 (417)
Q Consensus       297 p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~  333 (417)
                      ..++-+.|.......++...+.+.-++.|+..+++.+
T Consensus       150 kVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~  186 (203)
T COG4112         150 KVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEK  186 (203)
T ss_pred             eEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHH
Confidence            1133334444444444555567788999999999987

>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]

Probab=95.78  E-value=0.005  Score=44.50  Aligned_cols=34  Identities=21%  Similarity=0.533  Sum_probs=28.8

Q ss_pred             hhccCccccCCCcceeccCccceeecCCCCCCcccC
Q 014873          183 HNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP  218 (417)
Q Consensus       183 ~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp  218 (417)
                      -+.++|||+||.-+...+...|..|.  .||...|-
T Consensus        16 ~rk~~~CPrCG~gvfmA~H~dR~~CG--kCgyTe~~   49 (51)
T COG1998          16 KRKNRFCPRCGPGVFMADHKDRWACG--KCGYTEFK   49 (51)
T ss_pred             EEccccCCCCCCcchhhhcCceeEec--cccceEee
Confidence            35689999999998888888899997  79988774

>PRK00432 30S ribosomal protein S27ae; Validated

Probab=95.65  E-value=0.0064  Score=44.49  Aligned_cols=32  Identities=22%  Similarity=0.536  Sum_probs=25.4

Q ss_pred             hccCccccCCCcceeccCccceeecCCCCCCcccC
Q 014873          184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP  218 (417)
Q Consensus       184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp  218 (417)
                      +.++|||.||+. .......+..|.  .|+..+|-
T Consensus        18 ~~~~fCP~Cg~~-~m~~~~~r~~C~--~Cgyt~~~   49 (50)
T PRK00432         18 RKNKFCPRCGSG-FMAEHLDRWHCG--KCGYTEFK   49 (50)
T ss_pred             EccCcCcCCCcc-hheccCCcEECC--CcCCEEec
Confidence            457899999996 455555788997  69999884

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=95.61  E-value=0.0028  Score=62.95  Aligned_cols=110  Identities=25%  Similarity=0.298  Sum_probs=70.6

Q ss_pred             cccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccE-E-EEEEeecCCC
Q 014873          215 RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV-V-YHTSQPWPVG  292 (417)
Q Consensus       215 ~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v-~-~~~s~~~~~~  292 (417)
                      .-|-...|+....+.+....++||++.-.  ...|++|-|++..+|+--+++.|||.||||.+.... . +.+ .+..  
T Consensus        76 ~~yk~~iPv~ga~ild~~~sr~llv~g~q--a~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~-Ie~n--  150 (348)
T KOG2937|consen   76 APYKARIPVRGAIILDEKRSRCLLVKGWQ--ASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEG-IETN--  150 (348)
T ss_pred             ccccCCCCCchHhhhhhhhhhhheeecee--cccccccCccccccchhhhcchhcccchhhcCHHHHhccccC-cccc--
Confidence            34555567777777787677999988653  456999999999999999999999999999987421 1 111 1111  


Q ss_pred             CCCCCcEEEEEEEEEEecccccC---CcccccceEEEehhhHH
Q 014873          293 PNSMPCQLMVGFYAYAKSFEINV---DKEELEDARWHSREDVK  332 (417)
Q Consensus       293 ~~~~p~~l~i~f~a~~~~~~~~~---~~~E~~~a~Wf~~del~  332 (417)
                         +...+.-.|+---...+++.   -.-|++.+.|+.++++.
T Consensus       151 ---I~dq~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~  190 (348)
T KOG2937|consen  151 ---IRDQLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLV  190 (348)
T ss_pred             ---hhhceeeeeeeccceeeeecchhhhccccceeeeehhhhc
Confidence               11111111221101111111   13688999999999993

>smart00661 RPOL9 RNA polymerase subunit 9

Probab=95.25  E-value=0.028  Score=40.82  Aligned_cols=33  Identities=30%  Similarity=0.618  Sum_probs=25.2

Q ss_pred             CccccCCCcceeccCc--cceeecCCCCCCcccCCcC
Q 014873          187 RFCGHCGEKTIPKEAG--KLKQCSNASCKKRIYPRVD  221 (417)
Q Consensus       187 ~fC~~CG~~~~~~~~g--~~~~C~~~~C~~~~ypr~~  221 (417)
                      +|||.||..+......  .+..|+  .|++.++-+..
T Consensus         1 ~FCp~Cg~~l~~~~~~~~~~~vC~--~Cg~~~~~~~~   35 (52)
T smart00661        1 KFCPKCGNMLIPKEGKEKRRFVCR--KCGYEEPIEQK   35 (52)
T ss_pred             CCCCCCCCccccccCCCCCEEECC--cCCCeEECCCc
Confidence            5999999998776543  478897  69998875433

>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.67  E-value=0.023  Score=36.54  Aligned_cols=25  Identities=36%  Similarity=0.747  Sum_probs=16.1

Q ss_pred             ccccCCCcceeccCccceeecCC-CC
Q 014873          188 FCGHCGEKTIPKEAGKLKQCSNA-SC  212 (417)
Q Consensus       188 fC~~CG~~~~~~~~g~~~~C~~~-~C  212 (417)
                      +||.||+++...+++...+|+|+ .|
T Consensus         1 ~CP~C~s~l~~~~~ev~~~C~N~l~C   26 (28)
T PF03119_consen    1 TCPVCGSKLVREEGEVDIRCPNPLSC   26 (28)
T ss_dssp             B-TTT--BEEE-CCTTCEEE--CGC-
T ss_pred             CcCCCCCEeEcCCCCEeEECCCCCcC
Confidence            69999999998888999999986 66

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=93.77  E-value=0.2  Score=48.27  Aligned_cols=112  Identities=15%  Similarity=0.087  Sum_probs=70.4

Q ss_pred             EEEEEEecCCC--EEEEEEecC---CCCCcEE-eeeeeccCCCCHHHHHHHHHHHHhCCee---ccEEEEEEeecCC--C
Q 014873          224 VIMLVIDREND--RVLLSRQSR---FVPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEV---GEVVYHTSQPWPV--G  292 (417)
Q Consensus       224 Vivlvi~~~~~--kVLL~rr~~---~~~g~Ws-lPgG~VE~GEtleeAa~REv~EEtGl~v---~~v~~~~s~~~~~--~  292 (417)
                      +-+.|.++..+  +|.+.||+.   -++|+|+ ..||.+-.|-.+.+++..|..||+.+..   .++...|+..+-+  +
T Consensus       136 ingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~es  215 (306)
T KOG4313|consen  136 INGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFES  215 (306)
T ss_pred             eeeeecCCCcCceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeeh
Confidence            33555555433  677778874   4678888 8899999999999999999999999976   3343333322221  0


Q ss_pred             -CCCCCcEEEEEEEEEEecc-cccCCcccccceEEEehhhHHHHhh
Q 014873          293 -PNSMPCQLMVGFYAYAKSF-EINVDKEELEDARWHSREDVKKALT  336 (417)
Q Consensus       293 -~~~~p~~l~i~f~a~~~~~-~~~~~~~E~~~a~Wf~~del~~~L~  336 (417)
                       ..-+|. +...|-..+... -.+.++.|++.+..+++.+..+.|.
T Consensus       216 r~~~~pe-~qYVfDL~l~~d~iP~~nDGEV~~F~Lltl~~~v~~l~  260 (306)
T KOG4313|consen  216 RQGLFPE-TQYVFDLELPLDFIPQNNDGEVQAFELLTLKDCVERLF  260 (306)
T ss_pred             hhccCcc-ceEEEeccCchhhcCCCCCCceeeEeeecHHHHHHHHH
Confidence             111222 122222112211 2344578999999999998887554

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=93.18  E-value=0.23  Score=49.04  Aligned_cols=110  Identities=20%  Similarity=0.161  Sum_probs=65.7

Q ss_pred             CcCcEEEEEEEecCCCEEEEEEecCCC----------C----------------C-cEEeeeeeccCCCCHHHHHHHHHH
Q 014873          219 RVDPVVIMLVIDRENDRVLLSRQSRFV----------P----------------R-MWSCIAGFIEPGESLEEAVRRETW  271 (417)
Q Consensus       219 r~~pvVivlvi~~~~~kVLL~rr~~~~----------~----------------g-~WslPgG~VE~GEtleeAa~REv~  271 (417)
                      +++.|+ +++++.+..++||+|+.|+.          +                | ...|.||-|+..-|+.|-|..||.
T Consensus        25 ~~~~v~-ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~  103 (405)
T KOG4432|consen   25 KMSSVS-ILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVA  103 (405)
T ss_pred             hccceE-EEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHH
Confidence            345554 55667667899999986410          0                1 244789999999999999999999


Q ss_pred             HHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhh
Q 014873          272 EETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSRED  330 (417)
Q Consensus       272 EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~de  330 (417)
                      ||.|.++..-..+....+..+.+ ...+-|..|++.+....-.-...-+..-+..+++-
T Consensus       104 eecgy~v~~d~l~hv~~~~~g~~-~s~sa~~l~y~ei~es~kis~gggv~~~~~~~~~~  161 (405)
T KOG4432|consen  104 EECGYRVDPDDLIHVITFVVGAH-QSGSAQHLYYAEIDESMKISEGGGVITKVYYPVNV  161 (405)
T ss_pred             HHhCCcCChhHceEEEEEEeccc-cCccchheeeeecchhhccccCCceeeEEEEeehh
Confidence            99999985322222222222222 13456777787765322111223344444555443

>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2

Probab=92.81  E-value=0.06  Score=36.38  Aligned_cols=28  Identities=36%  Similarity=0.784  Sum_probs=19.4

Q ss_pred             CccccCCCcceeccCccc-eeecCCCCCCcc
Q 014873          187 RFCGHCGEKTIPKEAGKL-KQCSNASCKKRI  216 (417)
Q Consensus       187 ~fC~~CG~~~~~~~~g~~-~~C~~~~C~~~~  216 (417)
                      +|||.||.-|.+..+... ..|.  .|+.++
T Consensus         2 ~FCp~C~nlL~p~~~~~~~~~C~--~C~Y~~   30 (35)
T PF02150_consen    2 RFCPECGNLLYPKEDKEKRVACR--TCGYEE   30 (35)
T ss_dssp             -BETTTTSBEEEEEETTTTEEES--SSS-EE
T ss_pred             eeCCCCCccceEcCCCccCcCCC--CCCCcc
Confidence            799999999988655432 2687  698764

7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=92.47  E-value=0.32  Score=45.27  Aligned_cols=42  Identities=26%  Similarity=0.359  Sum_probs=31.3

Q ss_pred             CCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCe
Q 014873          233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE  277 (417)
Q Consensus       233 ~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~  277 (417)
                      --+|||.|..   ...|.||||.+.+||+-.+..+|.+.+-.|..
T Consensus        57 ~PHvLLLq~~---~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~   98 (188)
T PF13869_consen   57 HPHVLLLQIG---NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE   98 (188)
T ss_dssp             EEEEEEEEET---TTEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred             CcEEEEEecc---CccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence            3479998865   35899999999999999999999999999976

...

>COG4111 Uncharacterized conserved protein [General function prediction only]

Probab=89.74  E-value=3.1  Score=40.45  Aligned_cols=102  Identities=20%  Similarity=0.168  Sum_probs=58.7

Q ss_pred             EEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCC-CHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCC-CCCcEEE
Q 014873          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPN-SMPCQLM  301 (417)
Q Consensus       224 Vivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GE-tleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~-~~p~~l~  301 (417)
                      |++.|.+ .+.+||-+++..      .||.|-.|++- |++..++-=|.+.|+...+.|..+.++.-.-..+ .-...+.
T Consensus        28 VvvAv~~-~~p~VLtV~q~~------aLP~GPfep~hrslq~glr~wV~~qT~~plGYiEQLYTF~Dr~R~~~~g~rvis  100 (322)
T COG4111          28 VVVAVTD-GGPRVLTVRQGA------ALPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYIEQLYTFADRDRRNEGGMRVIS  100 (322)
T ss_pred             EEEEEcC-CCceEEEecccc------cCCCCCCchHHHHHHHHHHHHHHHHhcCccchHHhhhhhccccccCcCCceEEE
Confidence            3444444 356888887653      29999999876 5666666667888998887665433221110001 1235788


Q ss_pred             EEEEEEEecccccCCc--ccccceEEEehhhHH
Q 014873          302 VGFYAYAKSFEINVDK--EELEDARWHSREDVK  332 (417)
Q Consensus       302 i~f~a~~~~~~~~~~~--~E~~~a~Wf~~del~  332 (417)
                      ++|++......-....  .=...+.+|++++..
T Consensus       101 v~YLgLtr~~~~~~~~~a~W~~wy~yfPWED~R  133 (322)
T COG4111         101 VSYLGLTREAADSIHAGAHWADWYGYFPWEDHR  133 (322)
T ss_pred             EEEeeecchhcccCCccccccchhccCCHhhhc
Confidence            9999886533221111  222345557777654

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=87.56  E-value=0.21  Score=31.36  Aligned_cols=10  Identities=50%  Similarity=1.438  Sum_probs=5.6

Q ss_pred             cCccccCCCc
Q 014873          186 SRFCGHCGEK  195 (417)
Q Consensus       186 ~~fC~~CG~~  195 (417)
                      .+|||.||++
T Consensus        16 ~~fC~~CG~~   25 (26)
T PF13248_consen   16 AKFCPNCGAK   25 (26)
T ss_pred             cccChhhCCC
Confidence            4555555554

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=86.66  E-value=0.46  Score=29.43  Aligned_cols=24  Identities=29%  Similarity=0.740  Sum_probs=20.9

Q ss_pred             cccCCCcceeccCccceeecCCCCCC
Q 014873          189 CGHCGEKTIPKEAGKLKQCSNASCKK  214 (417)
Q Consensus       189 C~~CG~~~~~~~~g~~~~C~~~~C~~  214 (417)
                      |..||..+.+.+.+....||  .||+
T Consensus         1 C~sC~~~i~~r~~~v~f~CP--nCG~   24 (24)
T PF07754_consen    1 CTSCGRPIAPREQAVPFPCP--NCGF   24 (24)
T ss_pred             CccCCCcccCcccCceEeCC--CCCC
Confidence            78999999988888999998  4985

It is likely to bind zinc via its four well-conserved cysteine residues.

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=84.97  E-value=0.42  Score=29.24  Aligned_cols=22  Identities=27%  Similarity=0.815  Sum_probs=14.7

Q ss_pred             ccccCCCcceeccCccceeecCCCCCCc
Q 014873          188 FCGHCGEKTIPKEAGKLKQCSNASCKKR  215 (417)
Q Consensus       188 fC~~CG~~~~~~~~g~~~~C~~~~C~~~  215 (417)
                      |||+||+.+..    ....|+  .||..
T Consensus         1 ~Cp~CG~~~~~----~~~fC~--~CG~~   22 (23)
T PF13240_consen    1 YCPNCGAEIED----DAKFCP--NCGTP   22 (23)
T ss_pred             CCcccCCCCCC----cCcchh--hhCCc
Confidence            78999988843    244576  47753

>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins

Probab=83.62  E-value=0.75  Score=35.33  Aligned_cols=35  Identities=23%  Similarity=0.585  Sum_probs=28.1

Q ss_pred             HHhhhhccCccccCCCcceeccCccceeecCCCCCCcc
Q 014873          179 LLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRI  216 (417)
Q Consensus       179 l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~  216 (417)
                      +-.|+ +.+-||.||........++...|+  .||...
T Consensus        22 v~~~~-TSq~C~~CG~~~~~~~~~r~~~C~--~Cg~~~   56 (69)
T PF07282_consen   22 VDEAY-TSQTCPRCGHRNKKRRSGRVFTCP--NCGFEM   56 (69)
T ss_pred             ECCCC-CccCccCcccccccccccceEEcC--CCCCEE
Confidence            34455 789999999999886778899997  599873

More information about these proteins can be found at Protein of the Month: Transposase [].

>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]

Probab=83.53  E-value=1  Score=39.48  Aligned_cols=32  Identities=25%  Similarity=0.625  Sum_probs=23.3

Q ss_pred             HHHHHHHHhhhhccCccccCCCcceeccCccceeecCCCCCC
Q 014873          173 AGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKK  214 (417)
Q Consensus       173 ~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~  214 (417)
                      ...|.+|.      .+||.||.|+.. ..|.. .||  .|+.
T Consensus        21 l~GAkML~------~hCp~Cg~PLF~-KdG~v-~CP--vC~~   52 (131)
T COG1645          21 LQGAKMLA------KHCPKCGTPLFR-KDGEV-FCP--VCGY   52 (131)
T ss_pred             HhhhHHHH------hhCcccCCccee-eCCeE-ECC--CCCc
Confidence            34466664      589999999987 55544 597  5987

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=83.43  E-value=2.9  Score=38.19  Aligned_cols=40  Identities=25%  Similarity=0.363  Sum_probs=34.3

Q ss_pred             CEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCC
Q 014873          234 DRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI  276 (417)
Q Consensus       234 ~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl  276 (417)
                      .+|||.+-.   .-.+-||||.+++||+-.+.+.|-+-|-+|-
T Consensus        84 PHvLLLQig---~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr  123 (221)
T KOG1689|consen   84 PHVLLLQIG---NTFFKLPGGRLRPGEDEADGLKRLLTESLGR  123 (221)
T ss_pred             CeEEEEeeC---CEEEecCCCccCCCcchhHHHHHHHHHHhcc
Confidence            578887754   3578899999999999999999999999993

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=83.28  E-value=6.2  Score=38.32  Aligned_cols=103  Identities=16%  Similarity=0.181  Sum_probs=62.3

Q ss_pred             CEEEEEEecCCCCCcEEeeeeec-cCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCc---------EEEEE
Q 014873          234 DRVLLSRQSRFVPRMWSCIAGFI-EPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC---------QLMVG  303 (417)
Q Consensus       234 ~kVLL~rr~~~~~g~WslPgG~V-E~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~---------~l~i~  303 (417)
                      .=+||+++.-...+.|-+|-+-. +.++++...|.|++.+-.|=.. ..-+++..|....+-..|+         .-...
T Consensus       139 ~LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~-~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff  217 (263)
T KOG4548|consen  139 KLYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENK-STWFVGNAPFGHTPLQSPREMTTEEPVSSKVFF  217 (263)
T ss_pred             eEEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchh-hhheeccCccccccccCcccccccccccceeEE
Confidence            44677775523346899999999 9999999999999999888553 2234444433211111121         11222


Q ss_pred             EEEEEecccccCCcccccceEEEehhhHHHHhhhh
Q 014873          304 FYAYAKSFEINVDKEELEDARWHSREDVKKALTFA  338 (417)
Q Consensus       304 f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~  338 (417)
                      |.+...... ..+..-.+++.|++-+++.+.+...
T Consensus       218 ~k~~lv~~~-~~kn~n~edfvWvTkdel~e~l~~~  251 (263)
T KOG4548|consen  218 FKASLVANS-NQKNQNKEDFVWVTKDELGEKLPKF  251 (263)
T ss_pred             eeeeecccc-chhcccccceEEechHHHhhhcchH
Confidence            223322221 1122445679999999999977643

>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)

Probab=82.81  E-value=1.5  Score=30.82  Aligned_cols=33  Identities=27%  Similarity=0.686  Sum_probs=23.9

Q ss_pred             HHHhhhhccCccccCCCcceeccCccceeecCCCCC
Q 014873          178 ALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCK  213 (417)
Q Consensus       178 ~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~  213 (417)
                      .|..|.-...+||.||.|+.....| +..|+  .|+
T Consensus         9 LL~G~~ML~~~Cp~C~~PL~~~k~g-~~~Cv--~C~   41 (41)
T PF06677_consen    9 LLQGWTMLDEHCPDCGTPLMRDKDG-KIYCV--SCG   41 (41)
T ss_pred             HHHhHhHhcCccCCCCCeeEEecCC-CEECC--CCC
Confidence            3445666679999999999875555 56787  574

It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].

>PF12773 DZR: Double zinc ribbon

Probab=82.15  E-value=0.81  Score=32.86  Aligned_cols=32  Identities=28%  Similarity=0.639  Sum_probs=23.4

Q ss_pred             hccCccccCCCcceeccCccceeecCCCCCCcccC
Q 014873          184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP  218 (417)
Q Consensus       184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp  218 (417)
                      ...+||+.||.++. ........|+  .|+....+
T Consensus        10 ~~~~fC~~CG~~l~-~~~~~~~~C~--~Cg~~~~~   41 (50)
T PF12773_consen   10 DDAKFCPHCGTPLP-PPDQSKKICP--NCGAENPP   41 (50)
T ss_pred             ccccCChhhcCChh-hccCCCCCCc--CCcCCCcC
Confidence            34689999999997 3445567797  59886443

>PF12677 DUF3797: Domain of unknown function (DUF3797); InterPro: IPR024256 This presumed domain is functionally uncharacterised

Probab=81.45  E-value=1.2  Score=32.23  Aligned_cols=35  Identities=26%  Similarity=0.470  Sum_probs=24.0

Q ss_pred             HHHhhhhccCccccCCCcc--------eeccCccceeecCCCCCCc
Q 014873          178 ALLEWHNVSRFCGHCGEKT--------IPKEAGKLKQCSNASCKKR  215 (417)
Q Consensus       178 ~l~~W~~~~~fC~~CG~~~--------~~~~~g~~~~C~~~~C~~~  215 (417)
                      ..+.-.+.+-+||.||.--        ...+...+|.|.   ||+.
T Consensus         5 ~~~~L~~kY~~Cp~CGN~~vGngEG~liV~edtfkRtCk---CGfn   47 (49)
T PF12677_consen    5 KTLKLSNKYCKCPKCGNDKVGNGEGTLIVEEDTFKRTCK---CGFN   47 (49)
T ss_pred             hhcchhhhhccCcccCCcEeecCcceEEEeccceeeeec---cccc
Confidence            3344455689999999764        334556899995   8874

This domain family is found in bacteria and viruses, and is approximately 50 amino acids in length. There is a conserved CGN sequence motif.

>PRK10880 adenine DNA glycosylase; Provisional

Probab=81.31  E-value=4.3  Score=41.53  Aligned_cols=38  Identities=21%  Similarity=0.231  Sum_probs=26.2

Q ss_pred             CCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCe
Q 014873          233 NDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE  277 (417)
Q Consensus       233 ~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~  277 (417)
                      ++++||.||..  ...|+|++|..  +.    ++ ..++..|+.|+.
T Consensus       241 ~~~~~l~~r~~~gl~~gl~~fP~~--~~----~~-~~~~~~~~~~~~  280 (350)
T PRK10880        241 GDEVWLEQRPPSGLWGGLFCFPQF--AD----EE-ELRQWLAQRGIA  280 (350)
T ss_pred             CCEEEEEECCccChhhccccCCCC--cc----hh-hHHHHHHhcCCc
Confidence            68999999873  56899999962  32    11 245556778875

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=81.12  E-value=3.1  Score=41.32  Aligned_cols=84  Identities=23%  Similarity=0.188  Sum_probs=53.3

Q ss_pred             EEeeeeeccCCCCHHHHHHHHHHHHhCCeec--cEEEEEEeecC-CCCCCCCcEEEEEEEEEEecc------cccCCccc
Q 014873          249 WSCIAGFIEPGESLEEAVRRETWEETGIEVG--EVVYHTSQPWP-VGPNSMPCQLMVGFYAYAKSF------EINVDKEE  319 (417)
Q Consensus       249 WslPgG~VE~GEtleeAa~REv~EEtGl~v~--~v~~~~s~~~~-~~~~~~p~~l~i~f~a~~~~~------~~~~~~~E  319 (417)
                      .+|.+|.|+..-+..+-++||..||.|.++.  .++.+..+ |+ .+.++ ..+.|  |++.+.+.      --..+++|
T Consensus       286 lELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y-~sGVG~SG-~~QTm--fy~eVTdA~rsgpGgg~~ee~E  361 (405)
T KOG4432|consen  286 LELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKY-ISGVGQSG-DTQTM--FYVEVTDARRSGPGGGEKEEDE  361 (405)
T ss_pred             eeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhhee-ecccCCcC-CeeEE--EEEEeehhhccCCCCCcccccc
Confidence            4577999998899999999999999999873  33333322 22 23222 12333  44444321      12234567


Q ss_pred             ccceEEEehhhHHHHhh
Q 014873          320 LEDARWHSREDVKKALT  336 (417)
Q Consensus       320 ~~~a~Wf~~del~~~L~  336 (417)
                      +.+..-+++++++.+..
T Consensus       362 ~IEvv~lsle~a~~~~~  378 (405)
T KOG4432|consen  362 DIEVVRLSLEDAPSLYR  378 (405)
T ss_pred             eeeEEEechhhhhHHHh
Confidence            77888899999998543

>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins

Probab=80.57  E-value=1.5  Score=28.70  Aligned_cols=28  Identities=36%  Similarity=0.943  Sum_probs=14.8

Q ss_pred             CccccCCCcce-e--ccCc--cceeecCCCCCC
Q 014873          187 RFCGHCGEKTI-P--KEAG--KLKQCSNASCKK  214 (417)
Q Consensus       187 ~fC~~CG~~~~-~--~~~g--~~~~C~~~~C~~  214 (417)
                      ..||.||-... +  .+.|  ...+|++|.|..
T Consensus         2 hlcpkcgvgvl~pvy~~kgeikvfrcsnpacdy   34 (36)
T PF09151_consen    2 HLCPKCGVGVLEPVYNQKGEIKVFRCSNPACDY   34 (36)
T ss_dssp             -B-TTTSSSBEEEEE-TTS-EEEEEES-TT---
T ss_pred             ccCCccCceEEEEeecCCCcEEEEEcCCCcccc
Confidence            36999997752 2  2333  577899988865

Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.

>PRK13844 recombination protein RecR; Provisional

Probab=80.10  E-value=1.4  Score=41.56  Aligned_cols=91  Identities=15%  Similarity=0.173  Sum_probs=61.8

Q ss_pred             HHHHHHHHHhhhhccCccccCCCcceeccCccceeecCCCCCCcccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEe
Q 014873          172 IAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSC  251 (417)
Q Consensus       172 ~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~Wsl  251 (417)
                      +-.-|.+|.+=+.+.++|+.||.-+.   .+   .|+  -|....   -+.-++++|-+.  ..++-..+.+.+.|.|-.
T Consensus        43 ~~~la~~i~~~~~~i~~C~~C~~lte---~~---~C~--IC~d~~---Rd~~~iCVVE~~--~Dv~aiE~t~~y~G~YhV  109 (200)
T PRK13844         43 AIAIANSLLDATANIKKCVYCQALTE---DD---VCN--ICSNTN---RDDTKLCIIESM--LDMIAIEEAGIYRGKYFV  109 (200)
T ss_pred             HHHHHHHHHHHHHhCCcCCCCCCCCC---CC---CCC--CCCCCC---CCCCEEEEECCH--HHHHHHHhhCccceEEEE
Confidence            34458899999999999999998774   22   343  343322   233445555443  345555666678899999


Q ss_pred             eeeeccC--CCCHHHHHHHHHHHHhC
Q 014873          252 IAGFIEP--GESLEEAVRRETWEETG  275 (417)
Q Consensus       252 PgG~VE~--GEtleeAa~REv~EEtG  275 (417)
                      .+|.+.|  |..+++--..++.+-..
T Consensus       110 L~G~ispl~gi~p~~l~i~~L~~Ri~  135 (200)
T PRK13844        110 LNGRISPLDGIGPSELKLDILQQIIA  135 (200)
T ss_pred             ccCccCccCCCChhhcCHHHHHHHHh
Confidence            9999985  66777777777776643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	417
1vk6_A	269	Crystal Structure Of Nadh Pyrophosphatase (1790429)		3e-24
2gb5_A	269	Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1		3e-24
3smd_A	153	Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM		7e-05
2o1c_A	150	Structure Of The E. Coli Dihydroneopterin Triphosph		3e-04
1viq_A	220	Crystal Structure Of Putative Adp Ribose Pyrophosph		4e-04
1g0s_A	209	The Crystal Structure Of The E.Coli Adp-Ribose Pyro		6e-04

>pdb|1VK6|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (1790429) From Escherichia Coli K12 At 2.20 A Resolution Length = 269

Iteration: 1
 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 95/162 (58%), Gaps = 9/162 (5%)
Query: 170 LAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVI 229
             +AG    L E++   ++CG+CG +  P +      CS+  C++R YP++ P +I+ + 
Sbjct: 91  FQLAGRGVQLAEFYRSHKYCGYCGHEXYPSKTEWAXLCSH--CRERYYPQIAPCIIVAI- 147
Query: 230 DRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW 289
            R +D +LL++ +R    + + +AGF+E GE+LE+AV RE  EE+GI+V  + Y TSQPW
Sbjct: 148 -RRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVXEESGIKVKNLRYVTSQPW 206
Query: 290 PVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDV 331
           P      P  L   F A   S +I +D +EL +A W+  +D+
Sbjct: 207 P-----FPQSLXTAFXAEYDSGDIVIDPKELLEANWYRYDDL 243

>pdb|2GB5|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1.22) (1790429) From Escherichia Coli K12 At 2.30 A Resolution Length = 269

Iteration: 1
 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 95/162 (58%), Gaps = 9/162 (5%)
Query: 170 LAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVI 229
             +AG    L E++   ++CG+CG +  P +      CS+  C++R YP++ P +I+ + 
Sbjct: 91  FQLAGRGVQLAEFYRSHKYCGYCGHEXYPSKTEWAXLCSH--CRERYYPQIAPCIIVAI- 147
Query: 230 DRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW 289
            R +D +LL++ +R    + + +AGF+E GE+LE+AV RE  EE+GI+V  + Y TSQPW
Sbjct: 148 -RRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVXEESGIKVKNLRYVTSQPW 206
Query: 290 PVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDV 331
           P      P  L   F A   S +I +D +EL +A W+  +D+
Sbjct: 207 P-----FPQSLXTAFXAEYDSGDIVIDPKELLEANWYRYDDL 243

>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM BACILLUS Thuringiensis Length = 153

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 225 IMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           +  VI  E   +L           WS  AG IEPGE+ EEAV RE WEETG++V
Sbjct: 24  VAAVIKNEQGELLFQYPGG---EYWSLPAGAIEPGETPEEAVIREVWEETGLKV 74

>pdb|2O1C|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate Pyrophosphohydrolase Length = 150

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWE 272
           K ++Y R  PV I++VI  ++ + +L  Q R  P  W  + G +E GE+  +A  RE  E
Sbjct: 2   KDKVYKR--PVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKE 59
Query: 273 ETGIEV 278
           E  I+V
Sbjct: 60  EVTIDV 65

>pdb|1VIQ|A Chain A, Crystal Structure Of Putative Adp Ribose Pyrophosphatase Length = 220

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 16/130 (12%)
Query: 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRF-------VPRMWSCIAGFIEPGESLEE 264
            ++ I+ R     ++L  D   D V+L  Q R         P +   +AG IE GES+E+
Sbjct: 50  VRREIFER-GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVED 108
Query: 265 AVRRETWEETGIEVGE---VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
             RRE  EE G+ V     V+   + P   G  S    +MVG      +  I+   +E E
Sbjct: 109 VARREAIEEAGLIVKRTKPVLSFLASP---GGTSERSSIMVGEVDATTASGIHGLADENE 165
Query: 322 DARWH--SRE 329
           D R H  SRE
Sbjct: 166 DIRVHVVSRE 175

>pdb|1G0S|A Chain A, The Crystal Structure Of The E.Coli Adp-Ribose Pyrophosphatase Length = 209

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 16/130 (12%)
Query: 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRF-------VPRMWSCIAGFIEPGESLEE 264
            ++ I+ R     ++L  D   D V+L  Q R         P +   +AG IE GES+E+
Sbjct: 49  VRREIFER-GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVED 107
Query: 265 AVRRETWEETGIEVGE---VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
             RRE  EE G+ V     V+   + P   G  S    +MVG      +  I+   +E E
Sbjct: 108 VARREAIEEAGLIVKRTKPVLSFLASP---GGTSERSSIMVGEVDATTASGIHGLADENE 164
Query: 322 DARWH--SRE 329
           D R H  SRE
Sbjct: 165 DIRVHVVSRE 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	417
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	8e-85
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	1e-45
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	5e-34
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	7e-32
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	2e-27
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	1e-26
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	2e-24
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	4e-23
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	1e-21
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	1e-20
2b06_A	155	MUTT/nudix family protein; structural genomics, P	2e-20
3f13_A	163	Putative nudix hydrolase family member; structural	6e-18
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	3e-17
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	3e-17
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	7e-17
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	8e-17
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	1e-16
3exq_A	161	Nudix family hydrolase; protein structure initiati	2e-16
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	7e-16
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	8e-15
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	1e-14
3grn_A	153	MUTT related protein; structural genomics, hydrola	3e-14
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	4e-14
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	7e-14
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	9e-14
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	1e-13
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	1e-13
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	2e-13
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	3e-13
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	1e-12
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	2e-12
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	5e-12
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	6e-12
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	8e-12
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	1e-11
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	2e-11
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	5e-11
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	2e-10
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	2e-10
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	3e-10
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	1e-09
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	1e-09
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	2e-09
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	2e-09
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	2e-08
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	9e-08
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	1e-07
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	1e-07
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	1e-07
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	2e-07
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	3e-07
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	3e-07
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	3e-07
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	6e-07
2fb1_A	226	Conserved hypothetical protein; structural genomic	7e-07
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	1e-06
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	2e-06
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	2e-06
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	2e-06
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	4e-05
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	1e-04
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	2e-04
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	3e-04
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	7e-04

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A Length = 269

 Score =  259 bits (663), Expect = 8e-85
 Identities = 72/312 (23%), Positives = 123/312 (39%), Gaps = 83/312 (26%)

Query: 92  WISLGDCKIFLAN--------SGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFG 143
           W+   + K++L          +  +L  +  + +G         W +             
Sbjct: 25  WVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEW--QGEPVWLVQQQRRHD------ 76

Query: 144 SKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGK 203
                   +R V+               +AG    L E++   ++CG+CG +  P +   
Sbjct: 77  -----MGSVRQVIDLDV-------GLFQLAGRGVQLAEFYRSHKYCGYCGHEMYPSKTEW 124

Query: 204 LKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLE 263
              CS+  C++R YP++ P +I+ +    +D +LL++ +R    + + +AGF+E GE+LE
Sbjct: 125 AMLCSH--CRERYYPQIAPCIIVAIRR--DDSILLAQHTRHRNGVHTVLAGFVEVGETLE 180

Query: 264 EAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDA 323
           +AV RE  EE+GI+V  + Y TSQPWP      P  LM  F A   S +I +D +EL +A
Sbjct: 181 QAVAREVMEESGIKVKNLRYVTSQPWP-----FPQSLMTAFMAEYDSGDIVIDPKELLEA 235

Query: 324 RWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGP 383
            W+  +D+                                                +P P
Sbjct: 236 NWYRYDDLP----------------------------------------------LLPPP 249

Query: 384 FAIAHHLISSWV 395
             +A  LI   V
Sbjct: 250 GTVARRLIEDTV 261

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score =  154 bits (392), Expect = 1e-45
 Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 9/147 (6%)

Query: 187 RFCGHCGEKTIPK--EAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRF 244
           +FC  CG + I +  E   L +     C    Y     +V  +    EN  +L  R    
Sbjct: 4   KFCSQCGGEVILRIPEGDTLPRYICPKCHTIHYQNPKVIVGCIPE-WENKVLLCKRAIAP 62

Query: 245 VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGF 304
               W+  AGF+E  E+L +   RET EE    V     +     P        Q+ + F
Sbjct: 63  YRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSLP-----HISQVYMLF 117

Query: 305 YAYAKSFEINVDKEELEDARWHSREDV 331
            A     +      E  + R    +++
Sbjct: 118 RAKLLDLDFFPG-IESLEVRLFGEQEI 143

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score =  123 bits (311), Expect = 5e-34
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 9/127 (7%)

Query: 207 CSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAV 266
           C     ++     +  V +  ++  E+++VLL +Q +   R WS   G +E GE+LEEA+
Sbjct: 8   CKFNRKRRLYIENIMQVRVTGIL-IEDEKVLLVKQ-KVANRDWSLPGGRVENGETLEEAM 65

Query: 267 RRETWEETGIEV--GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDAR 324
            RE  EETG+EV   +++Y   +P        P  L + F       EI +   E +   
Sbjct: 66  IREMREETGLEVKIKKLLYVCDKPDAS-----PSLLHITFLLERIEGEITLPSNEFDHNP 120

Query: 325 WHSREDV 331
            H  + V
Sbjct: 121 IHDVQMV 127

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score =  117 bits (296), Expect = 7e-32
 Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 16/135 (11%)

Query: 211 SCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPR-----MWSCIAGFIEPGESLEEA 265
             ++   P       +++++ E   +LL ++           +W   +G +E GE+ ++A
Sbjct: 3   HDERTHVPVELRAAGVVLLN-ERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDA 61

Query: 266 VRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAY-----AKSFEINVDKEEL 320
             RE  EETG+ V  V +  +          P  +++  + +               +E+
Sbjct: 62  AVREACEETGLRVRPVKFLGAYLGR-----FPDGVLILRHVWLAEPEPGQTLAPAFTDEI 116

Query: 321 EDARWHSREDVKKAL 335
            +A + SRED  +  
Sbjct: 117 AEASFVSREDFAQLY 131

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score =  107 bits (268), Expect = 2e-27
 Identities = 27/119 (22%), Positives = 41/119 (34%), Gaps = 9/119 (7%)

Query: 217 YPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI 276
                  V   V D    ++L+ +    +  MW    G  EP E + +   RE +EETGI
Sbjct: 22  SMSHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGI 81

Query: 277 EVGE-----VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSRED 330
           +        +    + P   G       + +       SF IN  +EE     W    D
Sbjct: 82  KSEFRSVLSIRQQHTNPGAFG----KSDMYIICRLKPYSFTINFCQEECLRCEWMDLND 136

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score =  103 bits (259), Expect = 1e-26
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 217 YPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI 276
                 V +  VI++++  +L+    R      +  AG +EPGES+ +A  RE  EETG 
Sbjct: 3   MTWKPNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGH 62

Query: 277 EVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEIN-VDKEELEDARWHSREDVKKAL 335
                V      W    N     L   F     SF+ +      +  A W S ++++   
Sbjct: 63  SFLPEVLTGIYHWTCASNGTT-YLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQ 121

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 93.7 bits (233), Expect = 4e-23
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281
           P V +  +     + L+  ++     +W+  AG +E  E+L EA  RE WEETGI     
Sbjct: 4   PHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQ 63

Query: 282 VYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKA 334
            +     W   P+  P    +      +         +++  RW S E++ +A
Sbjct: 64  HFIRMHQWIA-PDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQA 115

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 91.4 bits (227), Expect = 1e-21
 Identities = 34/182 (18%), Positives = 71/182 (39%), Gaps = 15/182 (8%)

Query: 156 MVATDWADQ-RAMADLAIAGHARALLEWHNVSRF--CGHCGEKTIPKEAGK-LKQCSNAS 211
           M    W +    +  LA  G A    + +++ RF        + + + +G+ L+   +  
Sbjct: 2   MSQDKWLEWAVRLQALAQTGLAYGK-DVYDMERFEEIRQIAAEMLVEPSGQPLEVVKDLF 60

Query: 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETW 271
           C +  Y    P +       + D++LL +++     +WS   G+ +  +S+++ V +E  
Sbjct: 61  CNETGYQT--PKLDTRAAIFQEDKILLVQEND---GLWSLPGGWCDVDQSVKDNVVKEVK 115

Query: 272 EETGIEV--GEVVYHTSQPWPVGPNSMPCQ-LMVGFYAYAKSFEINVDKEELEDARWHSR 328
           EE G++V    VV    +     P     +   V         E   +  E   + + S 
Sbjct: 116 EEAGLDVEAQRVVAILDKHK-NNPAKSAHRVTKVFILCRLLGGEFQPN-SETVASGFFSL 173

Query: 329 ED 330
           +D
Sbjct: 174 DD 175

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 87.1 bits (216), Expect = 1e-20
 Identities = 37/148 (25%), Positives = 55/148 (37%), Gaps = 19/148 (12%)

Query: 214 KRIYPRVDPVVIMLVIDRENDRVLL-SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWE 272
            R+   V  VV+ + +  + D VLL     R     W   AG +EPGE++ EA++RE  E
Sbjct: 13  VRLRKNVCYVVLAVFLSEQ-DEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKE 71

Query: 273 ETGIEVGEV----VYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKE---ELEDARW 325
           E G+         V      W          +   F A      +   KE   E   A W
Sbjct: 72  EAGLHCEPETLLSVEERGPSW----------VRFVFLARPTGGILKTSKEADAESLQAAW 121

Query: 326 HSREDVKKALTFAEYIKAQRTAAAKVEQ 353
           + R  +   L   + +     AA   +Q
Sbjct: 122 YPRTSLPTPLRAHDILHLVELAAQYRQQ 149

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 86.7 bits (215), Expect = 2e-20
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 6/113 (5%)

Query: 223 VVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280
             I L+ D E  RV++  ++    R   ++   G +E  E+  E+V RE +EETG+ +  
Sbjct: 10  TNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQN 69

Query: 281 VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKK 333
                 + WP+        +++ +   A  F   +   E  +  W  ++ +  
Sbjct: 70  PQLVGIKNWPLDTG--GRYIVICY--KATEFSGTLQSSEEGEVSWVQKDQIPN 118

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 79.9 bits (197), Expect = 6e-18
 Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 12/126 (9%)

Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWE 272
           +K      D       I    D VL++         ++   G    GE   +A+ RE  E
Sbjct: 6   RKNERLPSDLARRATAIIEMPDGVLVTASRG---GRYNLPGGKANRGELRSQALIREIRE 62

Query: 273 ETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVK 332
           ETG+ +  ++Y      P   + +        Y      +    + E+E     S  D  
Sbjct: 63  ETGLRINSMLYLFDHITPFNAHKV--------YLCIAQGQP-KPQNEIERIALVSSPDTD 113

Query: 333 KALTFA 338
             L   
Sbjct: 114 MDLFVE 119

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 78.2 bits (193), Expect = 3e-17
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 9/115 (7%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRFVPRM--WSCIAGFIEPGESLEEAVRRETWEETGIEVG 279
            V   +V+D  +D+VLL +  +  PR   W    G +E GES+ E V+RE WEETGI V 
Sbjct: 5   RVTNCIVVD--HDQVLLLQ--K--PRRGWWVAPGGKMEAGESILETVKREYWEETGITVK 58

Query: 280 EVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE-DARWHSREDVKK 333
                      +          + F   A   E  + K+  E    W  +++V +
Sbjct: 59  NPELKGIFSMVIFDEGKIVSEWMLFTFKATEHEGEMLKQSPEGKLEWKKKDEVLE 113

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 78.6 bits (194), Expect = 3e-17
 Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 9/123 (7%)

Query: 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETW 271
             +  Y      +  +V    N+++L  ++       W+   G+ + G +  E   +E +
Sbjct: 59  ASETGYQTPKVDIRAVVFQ--NEKLLFVKEKS--DGKWALPGGWADVGYTPTEVAAKEVF 114

Query: 272 EETGIEV--GEVVYHTSQPWPVGPNSMPCQ-LMVGFYAYAKSFEINVDKEELEDARWHSR 328
           EETG EV   +++    +     P+        +         E      E E+  +   
Sbjct: 115 EETGYEVDHFKLLAIFDKE-KHQPSPSATHVYKIFIGCEIIGGEKKTS-IETEEVEFFGE 172

Query: 329 EDV 331
            ++
Sbjct: 173 NEL 175

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 76.5 bits (188), Expect = 7e-17
 Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 8/129 (6%)

Query: 223 VVIMLVIDRENDRVLLS-RQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE- 280
           V +  +++      LL  R +R     W    G ++  E+LE A  R T  E G+ +   
Sbjct: 19  VSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPIT 78

Query: 281 ------VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKA 334
                 V  H       G +     +++GF       E+ +  E+ +D RW + + +  +
Sbjct: 79  AGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLAS 138

Query: 335 LTFAEYIKA 343
                  +A
Sbjct: 139 DNVHANSRA 147

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 76.3 bits (188), Expect = 8e-17
 Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 9/141 (6%)

Query: 202 GKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLS-RQSRFVPRMWSCIAGFIEPGE 260
           G L+  +      +   +        ++   + R+LL  R+       W    G ++  E
Sbjct: 10  GTLEAQTQGPGSMQHTEQPRVGCGAAIVR--DGRILLIKRKRAPEAGCWGLPGGKVDWLE 67

Query: 261 SLEEAVRRETWEETGIEV--GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEI-NVDK 317
            +E AV RE  EE GI +    ++                 +   + A+A S E   V+ 
Sbjct: 68  PVERAVCREIEEELGIALERATLLCVVDHIDAANGEHW---VAPVYLAHAFSGEPRVVEP 124

Query: 318 EELEDARWHSREDVKKALTFA 338
           +  E   W + +D+ + LT A
Sbjct: 125 DRHEALGWFALDDLPQPLTHA 145

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 76.7 bits (189), Expect = 1e-16
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 222 PVVIMLVIDRENDRVLLS-RQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280
             +  LV+  +  RVLL  ++  F    W+   G ++ GE++E+  RRE  EE+G+ V  
Sbjct: 24  SRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDA 83

Query: 281 VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDV 331
           +       +          + V  +    S +    + +     W   + +
Sbjct: 84  LHKVGQIVFEFVGEPEL--MDVHVFC-TDSIQGTPVESDEMRPCWFQLDQI 131

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 7/121 (5%)

Query: 217 YPRVDPVVIM---LVIDRENDRVLL-SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWE 272
             R  PV ++   +V D E  RVL+  + +       S   G +E GE    A  RE +E
Sbjct: 3   LTRTQPVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFE 62

Query: 273 ETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVK 332
           ETG+ +  V +  +  W    +    +L + + A   +  +    E      W     + 
Sbjct: 63  ETGLRLSGVTFCGTCEWF-DDDRQHRKLGLLYRASNFTGTLKASAE--GQLSWLPITALT 119

Query: 333 K 333
           +
Sbjct: 120 R 120

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 73.1 bits (180), Expect = 7e-16
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 17/124 (13%)

Query: 216 IYPR----VDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETW 271
                    D V+I L        ++L  + ++ P   +   GF+E GE +EEA  RE  
Sbjct: 4   NVKTPLLATD-VIIRLWDGENFKGIVLIER-KYPPVGLALPGGFVEVGERVEEAAAREMR 61

Query: 272 EETGIEV--GEVVYHTSQPW--PVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHS 327
           EETG+EV   +++   S P   P         + V +   A   E      + +  + + 
Sbjct: 62  EETGLEVRLHKLMGVYSDPERDPRAH-----VVSVVWIGDA-QGEPKAG-SDAKKVKVYR 114

Query: 328 REDV 331
            E++
Sbjct: 115 LEEI 118

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 70.5 bits (173), Expect = 8e-15
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 10/142 (7%)

Query: 208 SNASCKKRIYPRVDPVVIML---VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEE 264
           SNA  ++    +VD  V  +    +  +N ++L+++        +  I G I+  ES E+
Sbjct: 1   SNAMTQQDFRTKVDNTVFGVRATALIVQNHKLLVTKD----KGKYYTIGGAIQVNESTED 56

Query: 265 AVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYA---YAKSFEINVDKEELE 321
           AV RE  EE G++                + +    +   Y       +     + E+ +
Sbjct: 57  AVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQ 116

Query: 322 DARWHSREDVKKALTFAEYIKA 343
              W   + ++       ++K 
Sbjct: 117 PCEWIDLDKLQNIQLVPVFLKT 138

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 69.8 bits (171), Expect = 1e-14
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 7/130 (5%)

Query: 227 LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS 286
             +D      LL + S      W+   G +EPGE   E   R T EE GIE G++     
Sbjct: 22  PKVDNNAIEFLLLQASDG-IHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEG 80

Query: 287 QPWPVGPNSMPCQLMVGFY-AYAKSFEINVD-KEELEDARWHSREDVKKALTFAEYIKAQ 344
               +   +      V ++ A  K +++ +    E +  RW   E+  +   F E     
Sbjct: 81  FKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKE----M 136

Query: 345 RTAAAKVEQM 354
           + A  +  Q 
Sbjct: 137 KAALQEGHQF 146

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 68.9 bits (169), Expect = 3e-14
 Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 11/116 (9%)

Query: 223 VVIMLVIDRENDRVLLSR---QSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV- 278
           + +  +I  E    LL R    SR     W    G + P ESL+E V RE WEETGI + 
Sbjct: 9   ISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMV 68

Query: 279 -GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKK 333
            G++    +                 F       ++ +  E +E   W S E +  
Sbjct: 69  PGDIAGQVNFELTEKKVIAIV-----FDGGYVVADVKLSYEHIE-YSWVSLEKILG 118

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 68.8 bits (168), Expect = 4e-14
 Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 17/156 (10%)

Query: 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV- 281
           +++   +  EN +VLL +  R    ++    G +E  E+  EAV+RE  EETGI V  + 
Sbjct: 1   MIVTSGVLVENGKVLLVKHKR--LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIG 58

Query: 282 VYHTSQPWPVGPNSMPCQLMVGFYAYAK--------SFEINVDKEELEDARWHSREDVKK 333
             +           MP  ++     Y +         + +     +L++  W    ++ +
Sbjct: 59  FTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREIDR 118

Query: 334 ALTFAEYIK------AQRTAAAKVEQMCKGVERGQS 363
             TF    K      +      K+ ++   +E    
Sbjct: 119 IETFPNVRKVVSLALSTLYRLGKISKLAAALEHHHH 154

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 67.5 bits (165), Expect = 7e-14
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 14/127 (11%)

Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWE 272
           KK I     PV    + +    ++LL + +      WS   G I   E+  +   RE  E
Sbjct: 1   KKSI-----PVRGAAIFNENLSKILLVQGTE--SDSWSFPRGKISKDENDIDCCIREVKE 53

Query: 273 ETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEIN---VDKEELEDARWHSRE 329
           E G ++ + +            ++  +    F     S   N     + E++   W   +
Sbjct: 54  EIGFDLTDYI----DDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFK 109

Query: 330 DVKKALT 336
            + K + 
Sbjct: 110 KISKTMY 116

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 67.3 bits (164), Expect = 9e-14
 Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 13/140 (9%)

Query: 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVV 282
           V+  +  +    +  +  ++     +W  +AG  E  E++ E  +RE+ EE  ++V   +
Sbjct: 10  VIPFIKTEANY-QFGVLHRTD--ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKM 66

Query: 283 Y-----HTSQPWPVGPNSMPCQLMVGFYAYAKSFEINV-DKEELEDARWHSREDVKKALT 336
           Y      +   +    N         F     S    V    E  + RW S E   + L 
Sbjct: 67  YSLDSHASIPNFHFSFNKPYVVPEYCFAIDLTSCSYQVTLSLEHSELRWVSYESAIQLLE 126

Query: 337 FAEYIKAQRTAAAKVEQMCK 356
           +     + +TA  ++ +  K
Sbjct: 127 W----DSNKTALYELNERLK 142

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 67.3 bits (164), Expect = 1e-13
 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 22/140 (15%)

Query: 227 LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV-------- 278
            ++ +  D+VLL    +   +    + G IE  E  EEA  RE  EE G+ V        
Sbjct: 12  FIVCK--DKVLLHLHKKA--KKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDI 67

Query: 279 ----------GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSR 328
                      +++ +         +     +   +YA   SFE + +  E +  +W+S+
Sbjct: 68  NLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKILKWYSK 127

Query: 329 EDVKKALTFAEYIKAQRTAA 348
           ED+K A    E I    T A
Sbjct: 128 EDLKNAHNIQENILVMATEA 147

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 67.6 bits (165), Expect = 1e-13
 Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 13/123 (10%)

Query: 222 PVVIMLVIDRENDRVLLSRQS---RFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
             ++  +I  +    LL + +      P  W+   G +EPGE +EEA+RRE  EE G ++
Sbjct: 28  RTIVCPLIQNDG-CYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQL 86

Query: 279 --GEVVYHTSQP------WPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSRED 330
              ++   T +       +  G       + + F   + + +I ++ +E +D  W   E+
Sbjct: 87  ILSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDICIN-DEFQDYAWVKPEE 145

Query: 331 VKK 333
           +  
Sbjct: 146 LAL 148

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 37/114 (32%), Positives = 48/114 (42%), Gaps = 11/114 (9%)

Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI--EVGEVVYHT 285
           V+      VLL R        W    G  EPGESLEEA  RE WEETG+  EV   +Y T
Sbjct: 8   VVFNAKREVLLLRDRM---GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPT 64

Query: 286 SQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAE 339
                   N    +  V ++         ++ E +  A W S E+ +  L F E
Sbjct: 65  RY-----VNPKGVEREVHWFLMRGEGAPRLE-EGMTGAGWFSPEEARALLAFPE 112

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 68.5 bits (167), Expect = 3e-13
 Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 8/124 (6%)

Query: 215 RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEET 274
             Y    PV   +++D    + +L  +       W    G I+  ES  +   RE +EET
Sbjct: 95  LRYKTRIPVRGAIMLDMSMQQCVLV-KGWKASSGWGFPKGKIDKDESDVDCAIREVYEET 153

Query: 275 GIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFE---INVDKEELEDARWHSREDV 331
           G +    +     P      ++  Q +  +     S +    +  ++E+    WH+  D+
Sbjct: 154 GFDCSSRI----NPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDL 209

Query: 332 KKAL 335
               
Sbjct: 210 PTFK 213

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 64.7 bits (157), Expect = 2e-12
 Identities = 22/133 (16%), Positives = 35/133 (26%), Gaps = 3/133 (2%)

Query: 211 SCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRET 270
             +             L    E++  +L   S   P  W    G +EP E    A  RE 
Sbjct: 30  QTRTYDGDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREV 89

Query: 271 WEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSRED 330
            EE G+   +                    +          +            W   ED
Sbjct: 90  CEEAGV---KGTLGRLVGIFENQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIED 146

Query: 331 VKKALTFAEYIKA 343
             K L + + ++A
Sbjct: 147 AIKVLQYHKPVQA 159

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 63.9 bits (155), Expect = 5e-12
 Identities = 19/141 (13%), Positives = 46/141 (32%), Gaps = 13/141 (9%)

Query: 227 LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG------- 279
             +++E ++ L+   +      W+   G  +  +   +   +E  EETG++         
Sbjct: 51  FAVNKERNKFLMIHHNI--YNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKA 108

Query: 280 ---EVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFE-INVDKEELEDARWHSREDVKKAL 335
              +V+            S    L + +       E + + ++E     W    ++ K  
Sbjct: 109 FALDVLTVNGHIKRGKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKYC 168

Query: 336 TFAEYIKAQRTAAAKVEQMCK 356
           +    I        K++   K
Sbjct: 169 SEPHMIPIYEKLINKLKTQSK 189

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 62.1 bits (151), Expect = 6e-12
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 228 VIDRENDRVLLSRQSRFVPR-MWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY-HT 285
           ++ +  +  ++  Q+   P   +    G IE  E+ EEA+ RE  EE GI V    Y   
Sbjct: 24  IVSKPENNTMVLVQA---PNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGE 80

Query: 286 SQPWPVGPNSMPCQLMVGFYAYAKSFE-INVDKEELEDARWHSREDVKKALTFA 338
           +  +    +        G++  A ++  ++   E      W + E+  + L   
Sbjct: 81  ADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLLKRG 134

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A Length = 209

 Score = 63.2 bits (154), Expect = 8e-12
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 11/76 (14%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRF-------VPRMWSCIAGFIEPGESLEEAVRRETWEET 274
              ++L  D   D V+L  Q R         P +   +AG IE GES+E+  RRE  EE 
Sbjct: 58  HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEA 117

Query: 275 GIEVGEVV----YHTS 286
           G+ V        +  S
Sbjct: 118 GLIVKRTKPVLSFLAS 133

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 22/141 (15%)

Query: 210 ASCKKRIYPR-----VDPVV--IMLVIDRENDRVLLSR--------QSRFVPRMWSCIAG 254
            +   + +        D ++  +  +  +    +LL +        +       W+   G
Sbjct: 15  KNYNAKEFRTPDGYTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGG 74

Query: 255 FIEPGESLEEAVRRETWEETGIEV--GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFE 312
           F++  ES E+A  RE  EET +            +P   G +     +   FYA      
Sbjct: 75  FVDENESAEQAAERELEEETSLTDIPLIPFGVFDKP---GRDPRGWIISRAFYAIVPPEA 131

Query: 313 INVDK--EELEDARWHSREDV 331
           +      ++  +       + 
Sbjct: 132 LEKRAAGDDAAEIGLFPMTEA 152

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 19/137 (13%)

Query: 227 LVIDREND---RVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283
           LVI R+       LL  Q+ + P  W+   G ++PGE   +A  RET EE  I   ++  
Sbjct: 8   LVIYRKLAGKIEFLL-LQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTI 66

Query: 284 ----HTSQPWPVGPNSMPCQLMVGFYA--YAKSFEINVDKEELEDARWHSREDVKKALTF 337
               H +  +            V ++        ++ +   E ++ +W   ED  K   +
Sbjct: 67  HEDCHETLFYEAKGKPK----SVKYWLAKLNNPDDVQLS-HEHQNWKWCELEDAIKIADY 121

Query: 338 AEYIKAQRTAAAKVEQM 354
           AE      +   K    
Sbjct: 122 AE----MGSLLRKFSAF 134

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341

 Score = 62.7 bits (152), Expect = 5e-11
 Identities = 34/195 (17%), Positives = 60/195 (30%), Gaps = 20/195 (10%)

Query: 145 KQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKL 204
                  +R         D       AIA + +    +    R+   C E          
Sbjct: 137 PDFSSTAIRGAYFEGKEGDYLDKVPPAIADYLQ---TFQKSERYIALCDEYQFL------ 187

Query: 205 KQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPR-MWSCIAGFIEPGESLE 263
            Q    +     Y         +V+  +   VL+ R+       + +   GFI+  E+L 
Sbjct: 188 -QAYKQAWATAPYAPTFITTDAVVV--QAGHVLMVRRQAKPGLGLIALPGGFIKQNETLV 244

Query: 264 EAVRRETWEETGIEVGEVVY--HTSQPWPVG-PNSMPCQ--LMVGFYAYAKSFEINVDK- 317
           E + RE  EET ++V   V             P        +   ++      E+   K 
Sbjct: 245 EGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRSLRGRTITHAYFIQLPGGELPAVKG 304

Query: 318 -EELEDARWHSREDV 331
            ++ + A W S  D+
Sbjct: 305 GDDAQKAWWMSLADL 319

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 29/134 (21%), Positives = 61/134 (45%), Gaps = 15/134 (11%)

Query: 217 YPR----VDPVVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRET 270
           Y +    VD V++    + +  +VLL ++    P    W+   GF+   ES E++V RET
Sbjct: 35  YEKPSLTVDMVLLCYNKEADQLKVLLIQRKGH-PFRNSWALPGGFVNRNESTEDSVLRET 93

Query: 271 WEETGIEVGEV----VYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWH 326
            EETG+ + +     ++  S+P       +   + V + A+     + +  ++ ++  W 
Sbjct: 94  KEETGVVISQENIEQLHSFSRPDRDPRGWV---VTVSYLAFIGEEPL-IAGDDAKEVHWF 149

Query: 327 SREDVKKALTFAEY 340
           + E   + +T +  
Sbjct: 150 NLERHGQHITLSHE 163

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} PDB: 3o52_A* 1viu_A 3o69_A 3o61_A Length = 191

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 13/77 (16%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRF--------VPRMWSCIAGFIEPGESLEEAVRRETWEE 273
               +L+ + +   V+L RQ R           ++    AG ++  E  E  +R+E  EE
Sbjct: 46  NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEP-EVCIRKEAIEE 104

Query: 274 TGIEVGEVV----YHTS 286
           TG EVGEV      + S
Sbjct: 105 TGYEVGEVRKLFELYMS 121

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 60.4 bits (146), Expect = 3e-10
 Identities = 21/141 (14%), Positives = 49/141 (34%), Gaps = 3/141 (2%)

Query: 150 VELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSN 209
           V+      AT++  +     ++         +    +        +       +      
Sbjct: 135 VDNYKNFNATEFRQKFYNGIISKQYMCSNDPKLGTYNFLTKFMDTQVYQDLVAENNYVIE 194

Query: 210 ASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVR 267
                   P     V +  +   ND +L+ ++ +  P   +W+   GF+E  E++ +A+ 
Sbjct: 195 YKRLWLKAPFKPNFVTVDALVIVNDHILMVQR-KAHPGKDLWALPGGFLECDETIAQAII 253

Query: 268 RETWEETGIEVGEVVYHTSQP 288
           RE +EET I +       ++ 
Sbjct: 254 RELFEETNINLTHEQLAIAKR 274

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300

 Score = 58.1 bits (140), Expect = 1e-09
 Identities = 29/189 (15%), Positives = 54/189 (28%), Gaps = 18/189 (9%)

Query: 165 RAMADLAIAGHARALL-----EWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPR 219
           RA+AD+        ++     E + V++  G      + +                 Y  
Sbjct: 69  RAVADVVDRLADEGVVPAPRGELYRVNQSWGEPTLMLLDRAVVPTFGVRAYGVHLNGYVG 128

Query: 220 VDPVVIMLVIDRENDRVLLSRQSRFVPRMW-SCIAGFIEPGESLEEAVRRETWEETGIEV 278
               + + +  R       S      P    + +AG      SL + + +E  EE  +  
Sbjct: 129 AGADLHLWIGRR-------SPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPE 181

Query: 279 GEV-----VYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKK 333
                   V   +          P  L +   A  + F  +    E+ D        V +
Sbjct: 182 ALARQAIPVGAITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVE 241

Query: 334 ALTFAEYIK 342
           A+   E  K
Sbjct: 242 AVRTTEAFK 250

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 6/116 (5%)

Query: 224 VIMLVIDRENDRVLLSRQS---RFVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEVG 279
           V+   +     ++ + R+S      P      + G ++ GE+ EEA RRE  EE  +E+ 
Sbjct: 36  VVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEID 95

Query: 280 EVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKAL 335
            + +     +     ++   + V  Y          +  ++    W + E +   +
Sbjct: 96  ALSWRPLASFSPFQTTLSSFMCV--YELRSDATPIFNPNDISGGEWLTPEHLLARI 149

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 17/146 (11%)

Query: 224 VIMLVIDRENDRVLLSRQS---RFVPRMWSCIA-GFIEPGESLEEAVRRETWEETGIEVG 279
              +V+     ++L+ R++    F+P M    A G ++  E L E+ RRE  EE GI   
Sbjct: 39  ATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGV 98

Query: 280 EVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKAL---- 335
               H    +      +   L              + ++E+ +  W + E++        
Sbjct: 99  PFAEHGQFYFEDKNCRVWGALFSCVSHG----PFALQEDEVSEVCWLTPEEITARCDEFT 154

Query: 336 -----TFAEYIKAQRTAAAKVEQMCK 356
                  A ++K      A   +  +
Sbjct: 155 PDSLKALALWMKRNAKNEAVETETAE 180

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 16/123 (13%)

Query: 224 VIMLVIDRENDRVLLSRQS---RFVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEV- 278
                +     ++L++R++   +  P +W+  + G  + GES E+AV R    E G+E+ 
Sbjct: 34  AFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEIT 93

Query: 279 ------GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVK 332
                  +  Y  + P  +  N + C +            + ++ +E+ D +W    DV 
Sbjct: 94  PPESIYPDFRYRATDPSGIVENEV-CPVFAARTTS----ALQINDDEVMDYQWCDLADVL 148

Query: 333 KAL 335
             +
Sbjct: 149 HGI 151

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWE 272
           K ++Y R  PV I++VI  ++ + +L  Q R  P  W  + G +E GE+  +A  RE  E
Sbjct: 2   KDKVYKR--PVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKE 59

Query: 273 ETGIEVGEVVYH 284
           E  I+V      
Sbjct: 60  EVTIDVVAEQLT 71

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145

 Score = 49.8 bits (120), Expect = 9e-08
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 218 PRVDPVVIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETG 275
           PR    V +L +       +L RQ R+     +   +AG +E GE L  A  RE  EE G
Sbjct: 2   PRGPRAVFILPVT-AQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVG 60

Query: 276 IEVGEVVY 283
               E V 
Sbjct: 61  GAASEWVP 68

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 18/144 (12%)

Query: 210 ASCKKRIYPR----VDPVVIMLVIDRENDRVLLSRQSRFVPR-MWSCIAGFIEP--GESL 262
           A+   + +      VD V+       +  +VLL ++S      +W    GFI+    ESL
Sbjct: 11  ANYDPKAFKAQLLTVDAVL--FTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESL 68

Query: 263 EEAVRRETWEETGIEVG--EVVYHTSQP--WPVGPNSMPCQLMVGFYAYAKSFEINVDKE 318
           E+ V R+  E+T +     E +           G +     + V + A        +   
Sbjct: 69  EQTVLRKLAEKTAVVPPYIEQLCTVGNNSRDARGWS-----VTVCYTALMSYQACQIQIA 123

Query: 319 ELEDARWHSREDVKKALTFAEYIK 342
            + D +W    DV +     ++++
Sbjct: 124 SVSDVKWWPLADVLQMPLAFDHLQ 147

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 228 VIDRENDRVLLSR--QSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           +I  EN+ + ++R      +        G IE GE+ E+AV RE  EE GI  
Sbjct: 10  IIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITP 62

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 52.2 bits (124), Expect = 1e-07
 Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 24/144 (16%)

Query: 218 PRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE 277
                         ++  V +  + ++    WS   G +E  E+   A  RE  EETG  
Sbjct: 22  DPAIASSKSAQEQLDSIEVCIVHRPKY--DDWSWPKGKLEQNETHRHAAVREIGEETGSP 79

Query: 278 V------GEVVYHTSQPWPVGPNSMPCQL---MVGFY-AYAKSFEI------------NV 315
           V       EV Y  S+      +S  C        ++ A   S +               
Sbjct: 80  VKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADDAEHLLDAFGPVHRA 139

Query: 316 DKEELEDARWHSREDVKKALTFAE 339
           D  E+ D  W S  + +K L+ + 
Sbjct: 140 DVGEINDIVWVSVREARKILSHST 163

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 213 KKRIYPRVD---PVVIMLVIDRENDRVLLSRQSRFVPRMWSC-I-AGFIEPGESLEEAVR 267
           ++  Y           +L +  E    LL RQ R     +   + AG ++ GE+ E A R
Sbjct: 30  RELTYVYRPGPVAASFVLPVT-ERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAAR 88

Query: 268 RETWEETGIEVGEVVY 283
           RE  EE G E   ++ 
Sbjct: 89  RELREEVGAEAETLIP 104

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 213 KKRIYPRVDPVVIMLVIDR--ENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRR 268
             R     D V ++ V+ R    + ++L +Q R           AG I+ GE+ E A  R
Sbjct: 54  TTRKEQTADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALR 113

Query: 269 ETWEETGIEVGEVVY 283
           E  EETG +      
Sbjct: 114 ELEEETGYKGDIAEC 128

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRETW 271
           +R+ P     V+++ I   +D ++L R+              G I+PGES+ EA  RE  
Sbjct: 42  ERMRPTNREAVMIVPIV--DDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELK 99

Query: 272 EETG 275
           EE G
Sbjct: 100 EEVG 103

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 224 VIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRETWEETG 275
           V ++ +     R+L  RQ R           AG IEPGE   EA RRE  E+TG
Sbjct: 37  VAVIALR--EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTG 88

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Length = 140

 Score = 47.6 bits (114), Expect = 6e-07
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 228 VIDRENDRVLLSR--QSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           +I+R+  ++LL++         +W    G +EP ES  +A+ RE  EE GIE 
Sbjct: 15  IIERDG-KILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEA 66

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Length = 226

 Score = 48.9 bits (116), Expect = 7e-07
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 16/120 (13%)

Query: 217 YPR----VDPVVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRET 270
            P     +D ++     +     +LL +++   P    WS + GF++  ES+++A +R  
Sbjct: 9   NPTFYLGIDCII--FGFNEGEISLLLLKRNFE-PAMGEWSLMGGFVQKDESVDDAAKRVL 65

Query: 271 WEETGIEVGEVVYHTSQPWPVGPNSMPCQ---LMVGFYAYAKSFEINVDKEELEDARWHS 327
            E TG+E      +  Q    G          + + +YA     E + +  +  +A W +
Sbjct: 66  AELTGLENV----YMEQVGAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVN 121

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 223 VVIMLVIDRENDRVLLSR--QSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           VV   ++D++N RVLL++  + + +  +W    G +E GE+ E ++ RE  EE G+ V
Sbjct: 31  VVACALLDQDN-RVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHV 87

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRFVP--RMWSCIAGFIE-PGESLEEAVRRETWEETGIEV 278
             V ++ +D +N  + +  Q R     R+W   AG ++  GE       RE  EE G++ 
Sbjct: 44  GAVAIVAMD-DNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQA 102

Query: 279 GEVVY 283
                
Sbjct: 103 STWQV 107

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 223 VVIMLVIDRENDRVLLSR--QSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           V    +ID +  RVLL++    + +  +W    G +EPGE+ E A+ RE  EE G++ 
Sbjct: 10  VTAAALIDPDG-RVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDT 66

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 11/58 (18%)

Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGF-------IEPGESLEEAVRRETWEETGIEV 278
           VI    ++ L  +  R   +     +         +E GESL+EA++RE  EE    +
Sbjct: 12  VIRL-GEKYLCVQ--RGQTKFSY-TSFRYEFPGGKVEEGESLQEALQREIMEEMDYVI 65

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 15/73 (20%)

Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGF-------IEPGESLEEA 265
           K R    +  V     + ++  ++L+ +  R         AG        IE GE+ EEA
Sbjct: 15  KIRKGHWIPVVAG--FLRKDG-KILVGQ--RPENNSL---AGQWEFPGGKIENGETPEEA 66

Query: 266 VRRETWEETGIEV 278
           + RE  EE GIE 
Sbjct: 67  LARELNEELGIEA 79

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 61/441 (13%), Positives = 127/441 (28%), Gaps = 141/441 (31%)

Query: 16  RSKTPKSTDPFSPTS-----ALESLKTRLLDNTLHCQPQKH---H-------SSLSSSSS 60
           R +       F+  +         L+  LL+  L  +P K+           + ++    
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLE--L--RPAKNVLIDGVLGSGKTWVALDVC 171

Query: 61  SSPDFK-VLPFRKGRPLTYSGPGETAPVWHLGWISLGDCK------IFLAN--------- 104
            S   +  + F+               ++   W++L +C         L           
Sbjct: 172 LSYKVQCKMDFK---------------IF---WLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 105 -------SGI-----ELKEEALVYLGSRSA-------DDVVYWAIDVSDGDSLASEFGSK 145
                  S I      ++ E    L S+          +V        +    A     K
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAWN----AFNLSCK 267

Query: 146 QLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRF--CGHCGEKTIPKEAGK 203
            L  +  R   V TD+        +++  H+  L      S       C  + +P+E   
Sbjct: 268 IL--LTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-- 322

Query: 204 LKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRF----VPRMWSCIAGFIEPG 259
                            +P  + ++   E+ R  L+    +      ++ + I   +   
Sbjct: 323 --------LT------TNPRRLSII--AESIRDGLATWDNWKHVNCDKLTTIIESSLN-- 364

Query: 260 ESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEE 319
             LE A  R+ ++   +            +P   + +P  L+   +      ++ V   +
Sbjct: 365 -VLEPAEYRKMFDRLSV------------FPPSAH-IPTILLSLIWFDVIKSDVMVVVNK 410

Query: 320 LEDARWHSREDVKK---ALTFAEY-----IKAQRTAAAKVEQMCKGVERGQSLAADFNVE 371
           L     H    V+K     T +       +K +      + +    V+           +
Sbjct: 411 L-----HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPKT---FD 460

Query: 372 SGELAPIFIPGPFA--IAHHL 390
           S +L P ++   F   I HHL
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHL 481

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIA---GFIEPGESLEEAVRRETWEETGIEVGE 280
           V++ +    + RVLL+ +S  +P     IA   G ++ GE+  +A  RE  EE  ++   
Sbjct: 38  VLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAA 97

Query: 281 V 281
           V
Sbjct: 98  V 98

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Length = 164

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 13/26 (50%), Positives = 18/26 (69%)

Query: 256 IEPGESLEEAVRRETWEETGIEVGEV 281
           I PGES E+A+ RE +EE G+   +V
Sbjct: 40  INPGESAEQAMYRELFEEVGLSRKDV 65

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 256 IEPGESLEEAVRRETWEETGIEVGEVVYHT 285
           I+ GE    A  RE  EETG+   EV+   
Sbjct: 47  IDEGEDPRNAAIRELREETGVTSAEVIAEV 76

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A* Length = 212

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 254 GFIEPGE-SLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFE 312
           GF++  + SLEE ++RE  EE G  +  V               P + +  FY       
Sbjct: 73  GFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIK----- 127

Query: 313 INVDKEELEDAR 324
             +  EE+E   
Sbjct: 128 -ELKLEEIERIE 138

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A Length = 217

 Score = 39.9 bits (92), Expect = 7e-04
 Identities = 36/162 (22%), Positives = 59/162 (36%), Gaps = 8/162 (4%)

Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGIEVGEVVYHTS 286
           +  R   R  +  Q RF  R      GF++  + SLE+ + RE  EE G          +
Sbjct: 57  LFGRIPLRYAILMQMRFDGR-LGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERT 115

Query: 287 QPWPVGPNSMPCQLMVGFYAYAKSFE-INVDKEELEDARWHSREDVK-KALTFAEYIKAQ 344
                   S P +++  FYA   + E +   +     A+ H  E +    +         
Sbjct: 116 DYRSSHVGSGP-RVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLRDGV 174

Query: 345 RTAAAKVEQMCKGVERGQSLAA--DFN-VESGELAPIFIPGP 383
                 +E    G  R Q L A  D   ++SG ++ + IP  
Sbjct: 175 GGLPTFLENSFIGSAREQLLEALQDLGLLQSGSISGLKIPAH 216

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	417
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	100.0
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.93
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.88
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.88
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.87
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.85
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.84
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.82
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.8
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.8
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.78
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.78
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.77
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.76
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.76
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.76
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.76
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.76
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.76
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.76
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.75
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.75
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.75
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.75
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.74
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.74
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.74
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.74
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.74
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.73
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.72
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.72
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.71
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.71
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.71
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.7
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.7
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.7
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.7
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.7
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.69
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.69
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.68
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.68
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.68
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.68
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.68
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.68
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.67
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.67
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.67
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.66
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.66
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.66
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.66
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.65
3f13_A	163	Putative nudix hydrolase family member; structural	99.65
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.65
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.64
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.64
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.63
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.62
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.6
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.6
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.56
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.55
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.5
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.48
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.47
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.42
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.36
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.35
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.31
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.27
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.01
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.83
3bho_A	208	Cleavage and polyadenylation specificity factor su	98.54
3j20_Y	50	30S ribosomal protein S27AE; archaea, archaeal, KI	97.05
2k4x_A	55	30S ribosomal protein S27AE; metal-binding, ribonu	93.81
3h0g_I	113	DNA-directed RNA polymerases I, II, and III subuni	87.8
4esj_A	257	Type-2 restriction enzyme DPNI; restriction endonu	84.41

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=100.00  E-value=1.9e-41  Score=329.26  Aligned_cols=247  Identities=28%  Similarity=0.490  Sum_probs=206.0

Q ss_pred             CCCCCCeEEEEEeCCceeeecCCCCCCCceeeccccchhhHHHhhhcCcCcccccEEEeeeeeCCCeeEEEEecCCCCcc
Q 014873           59 SSSSPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSL  138 (417)
Q Consensus        59 ~~~~~~~~~l~f~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Lg~~~~~~~~~~a~~~~~~~~~  138 (417)
                      ..+...+++++|.++++|+.. ++       +.+....++..         .....+|||..  ++.+||+++++     
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~---------~~~~~~~lg~~--~~~~~~~~~~~-----   72 (269)
T 1vk6_A           17 IEKLDHGWWVVSHEQKLWLPK-GE-------LPYGEAANFDL---------VGQRALQIGEW--QGEPVWLVQQQ-----   72 (269)
T ss_dssp             CCTTCEEEEEEEETTEEECGG-GS-------CCEEEGGGGTC---------TTCEEEEEEES--SSSEEEEEECC-----
T ss_pred             cCCCCCeEEEEEECCEEEEeC-CC-------cCCCChhhcCc---------ccCceEEEecc--CCEEEEEEecC-----
Confidence            456777999999999999954 21       11222222211         22467899985  68899999875     


Q ss_pred             cccccccccchhhhHHHHhhcchhhhhhHHHHHHHHHHHHHHhhhhccCccccCCCcceeccCccceeecCCCCCCcccC
Q 014873          139 ASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP  218 (417)
Q Consensus       139 ~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp  218 (417)
                            .+..+.+||.++..       ++.+++++++|++|.+|+++++|||.||+++....+++++.|+  +|+..+||
T Consensus        73 ------~~~~~~~lr~~~~~-------~~~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~C~--~C~~~~yp  137 (269)
T 1vk6_A           73 ------RRHDMGSVRQVIDL-------DVGLFQLAGRGVQLAEFYRSHKYCGYCGHEMYPSKTEWAMLCS--HCRERYYP  137 (269)
T ss_dssp             ------CSSCEECTTHHHHH-------CHHHHHHHHHHHHHHHHHHTTSBCTTTCCBEEECSSSSCEEES--SSSCEECC
T ss_pred             ------CCccchhHHHHhcC-------CHHHhHHHHHHHHHHhhhhcCCccccCCCcCccCCCceeeeCC--CCCCEecC
Confidence                  13557789998753       2356789999999999999999999999999999999999997  69999999


Q ss_pred             CcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCc
Q 014873          219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC  298 (417)
Q Consensus       219 r~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~  298 (417)
                      +++|+|++++.+  +++|||+||.+.+.|+|++|||+||+|||+++||+||++||||+++..+.++++++|++     +.
T Consensus       138 ~~~~~viv~v~~--~~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~~~-----~~  210 (269)
T 1vk6_A          138 QIAPCIIVAIRR--DDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPF-----PQ  210 (269)
T ss_dssp             CCEEEEEEEEEE--TTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEET-----TE
T ss_pred             CCCcEEEEEEEe--CCEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEecCC-----CC
Confidence            999999887766  58999999998778999999999999999999999999999999999999999999984     56


Q ss_pred             EEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhccccccccccccccCCCCCc
Q 014873          299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPI  378 (417)
Q Consensus       299 ~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~~~~~~er~~~~~~~~k~~~~~~~~~  378 (417)
                      .+|++|.+.+..+++.++++|+.+++||++++++.                                             
T Consensus       211 ~~~~~f~a~~~~~~~~~~~~E~~~~~W~~~~el~~---------------------------------------------  245 (269)
T 1vk6_A          211 SLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPL---------------------------------------------  245 (269)
T ss_dssp             EEEEEEEEEEEECCCCCCTTTEEEEEEEETTSCCS---------------------------------------------
T ss_pred             EEEEEEEEEECCCCcCCCCcceEEEEEEEHHHhhh---------------------------------------------
Confidence            79999999887777777778999999999998753                                             


Q ss_pred             cCCccchHHHHHHHHHhcC
Q 014873          379 FIPGPFAIAHHLISSWVYK  397 (417)
Q Consensus       379 ~lP~~faIA~~Li~~w~~~  397 (417)
                       +|...+|++.||+.|+..
T Consensus       246 -l~~~~si~~~li~~~l~~  263 (269)
T 1vk6_A          246 -LPPPGTVARRLIEDTVAM  263 (269)
T ss_dssp             -CCCTTSHHHHHHHHHHHH
T ss_pred             -cccCcHHHHHHHHHHHHH
Confidence             467789999999999853

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.93  E-value=4.6e-25  Score=202.05  Aligned_cols=154  Identities=21%  Similarity=0.294  Sum_probs=121.1

Q ss_pred             ccCccccCCCcceecc----CccceeecCCCCCCcccCCcCcEEEEEEEecCCCEEEEEEecCC-CCCcEEeeeeeccCC
Q 014873          185 VSRFCGHCGEKTIPKE----AGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPG  259 (417)
Q Consensus       185 ~~~fC~~CG~~~~~~~----~g~~~~C~~~~C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~-~~g~WslPgG~VE~G  259 (417)
                      +++|||.||+++....    .+.+..|+  .|++.+|+++..+|.+++.+  +++|||+||.+. ..|.|.+|||+||+|
T Consensus         2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~--~~~~~~~~~~~~~v~~ii~~--~~~vLL~~r~~~~~~g~w~lPgG~ve~g   77 (189)
T 3cng_A            2 HMKFCSQCGGEVILRIPEGDTLPRYICP--KCHTIHYQNPKVIVGCIPEW--ENKVLLCKRAIAPYRGKWTLPAGFMENN   77 (189)
T ss_dssp             -CCBCTTTCCBCEEECCTTCSSCEEEET--TTTEEECCCCEEEEEEEEEE--TTEEEEEEESSSSSTTCEECSEEECCTT
T ss_pred             CcccCchhCCccccccccCCCCcceECC--CCCCccCCCCceEEEEEEEe--CCEEEEEEccCCCCCCeEECceeeccCC
Confidence            5899999999997542    34678897  69999999988877777766  689999999863 378999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHH-HHhhhh
Q 014873          260 ESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVK-KALTFA  338 (417)
Q Consensus       260 EtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~-~~L~~~  338 (417)
                      ||+++||+||++||||+.+....++....++.     ...+++.|.+......+. ..+|..+++|++++++. ..+.++
T Consensus        78 Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~-----~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~el~~~~l~~~  151 (189)
T 3cng_A           78 ETLVQGAARETLEEANARVEIRELYAVYSLPH-----ISQVYMLFRAKLLDLDFF-PGIESLEVRLFGEQEIPWNDIAFR  151 (189)
T ss_dssp             CCHHHHHHHHHHHHHCCCEEEEEEEEEEEEGG-----GTEEEEEEEEEECCSCCC-CCTTEEEEEEECTTTCCGGGBSCH
T ss_pred             CCHHHHHHHHHHHHHCCccccceeEEEEecCC-----CcEEEEEEEEEeCCCccC-CCccceeEEEECHHHcCcccccCh
Confidence            99999999999999999987666666655542     246777787776655443 35788999999999998 457777


Q ss_pred             hHHHHHHHHH
Q 014873          339 EYIKAQRTAA  348 (417)
Q Consensus       339 ~~~~a~~~a~  348 (417)
                      +....+..++
T Consensus       152 ~~~~~l~~~l  161 (189)
T 3cng_A          152 VIHDPLKRYM  161 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7665554433

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.88  E-value=1.7e-22  Score=192.72  Aligned_cols=175  Identities=18%  Similarity=0.222  Sum_probs=128.3

Q ss_pred             CCCcccCCcCcEEEEEEE--ecCCCEEEEEEecC-CCCCcEEeeeeeccC--CCCHHHHHHHHHHHHhCCeeccEEEEEE
Q 014873          212 CKKRIYPRVDPVVIMLVI--DRENDRVLLSRQSR-FVPRMWSCIAGFIEP--GESLEEAVRRETWEETGIEVGEVVYHTS  286 (417)
Q Consensus       212 C~~~~ypr~~pvVivlvi--~~~~~kVLL~rr~~-~~~g~WslPgG~VE~--GEtleeAa~REv~EEtGl~v~~v~~~~s  286 (417)
                      |....|+++...|.++|+  +.++++|||++|.+ +..|.|++|||+||+  |||+++||+||++||||+++..+.+++.
T Consensus        13 ~~~~~~~~p~v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~   92 (240)
T 3gz5_A           13 YDPKAFKAQLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCT   92 (240)
T ss_dssp             --------CEEEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEE
T ss_pred             cCccccCCCccEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEE
Confidence            445566666555555544  44456999999985 457899999999999  9999999999999999999988888877


Q ss_pred             eecCCCCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHH-HhhhhhHHHHHHHHHHHHHHhhhhhccccccc
Q 014873          287 QPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKK-ALTFAEYIKAQRTAAAKVEQMCKGVERGQSLA  365 (417)
Q Consensus       287 ~~~~~~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~-~L~~~~~~~a~~~a~~~l~~~~~~~er~~~~~  365 (417)
                      ...+.... ....+.+.|++.+.........+|+.+++|+++++++. .+.++|.. ++..+..+++.            
T Consensus        93 ~~~~~r~~-~~~~~~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~~~l~~dh~~-il~~a~~rlr~------------  158 (240)
T 3gz5_A           93 VGNNSRDA-RGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQMPLAFDHLQ-LIEQARERLTQ------------  158 (240)
T ss_dssp             EEESSSST-TSCEEEEEEEEECCHHHHHHHHTTCTTEEEEEHHHHTTSCCSTTHHH-HHHHHHHHHHH------------
T ss_pred             eCCCccCC-CceEEEEEEEEEecccccCCCCCcccceEEecHHHcccCCcchhHHH-HHHHHHHHHHH------------
Confidence            76653211 12467788888876555444567899999999999985 58888744 44455555544            


Q ss_pred             cccccccCCCCCccCCccchHH--HHHHHHHhcCcCCCCC
Q 014873          366 ADFNVESGELAPIFIPGPFAIA--HHLISSWVYKDAPDGV  403 (417)
Q Consensus       366 ~~~k~~~~~~~~~~lP~~faIA--~~Li~~w~~~~~~~~~  403 (417)
                         |+.|.+++..++|++||+.  +++++..++..+++.|
T Consensus       159 ---kl~y~~i~~~llp~~Ftl~~l~~~ye~i~g~~~~~~n  195 (240)
T 3gz5_A          159 ---KALYSLVPGFALSEPFTLPELQHVHEVLLGKPIQGKS  195 (240)
T ss_dssp             ---HHHHCSGGGGGSCSSBCHHHHHHHHHHHHTSCCCHHH
T ss_pred             ---hcccCcHHHHhCCCCccHHHHHHHHHHHcCCcCCHHH
Confidence               4556778888999999999  6999999998887654

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.88  E-value=1.7e-22  Score=190.86  Aligned_cols=172  Identities=16%  Similarity=0.168  Sum_probs=130.1

Q ss_pred             CcccCCcCcEEEEEEEe--cCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecC
Q 014873          214 KRIYPRVDPVVIMLVID--RENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP  290 (417)
Q Consensus       214 ~~~ypr~~pvVivlvi~--~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~  290 (417)
                      ...|+++..+|.++|+.  +++++|||++|.+ +..|.|++|||+||+|||+++||+||++||||+++..+..++...++
T Consensus         6 ~~~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~~~   85 (226)
T 2fb1_A            6 YSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAI   85 (226)
T ss_dssp             TTTSCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCT
T ss_pred             cccCCCCeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeCCC
Confidence            45567766666666652  4467999999986 45789999999999999999999999999999999888888777554


Q ss_pred             CCCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccccccccccc
Q 014873          291 VGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNV  370 (417)
Q Consensus       291 ~~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~~~~~~er~~~~~~~~k~  370 (417)
                      .... ....+.+.|++.+.......+.+|+.+++|++++++++ +.++|. ..+..++.+++.               |.
T Consensus        86 ~r~~-~~~~v~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~-l~~dh~-~il~~a~~rlr~---------------~~  147 (226)
T 2fb1_A           86 DRDP-GERVVSIAYYALININEYDRELVQKHNAYWVNINELPA-LIFDHP-EMVDKAREMMKQ---------------KA  147 (226)
T ss_dssp             TSSS-SSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCCC-BSTTHH-HHHHHHHHHHHH---------------HH
T ss_pred             CcCC-CceEEEEEEEEEecCcccccCCccccceEEEEHHHhhh-ccCCHH-HHHHHHHHHHHh---------------hc
Confidence            3211 12456777888766544434457889999999999987 778875 444455555544               33


Q ss_pred             ccCCCCCccCCccchHH--HHHHHHHhcCcCCCCC
Q 014873          371 ESGELAPIFIPGPFAIA--HHLISSWVYKDAPDGV  403 (417)
Q Consensus       371 ~~~~~~~~~lP~~faIA--~~Li~~w~~~~~~~~~  403 (417)
                      .|.+++..++|+.||+.  +++++..++..++..|
T Consensus       148 ~y~~i~~~llp~~ftl~~l~~~ye~~~~~~~~~~n  182 (226)
T 2fb1_A          148 SVEPIGFNLLPKLFTLSQLQSLYEAIYGEPMDKRN  182 (226)
T ss_dssp             HHSGGGGGGSCSEEEHHHHHHHHHHHHTSCCCHHH
T ss_pred             ccCchHHHhCCccccHHHHHHHHHHHhCCCCCchh
Confidence            45667778999999998  8899999998887655

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.87  E-value=3.7e-22  Score=198.75  Aligned_cols=192  Identities=16%  Similarity=0.166  Sum_probs=134.1

Q ss_pred             cchhhhHHHHhh-cchhhhhhHHHHHHH-HHHHHHHhhhhccCccccCCCcceeccCccceeecCCCCCCcccCCcCcEE
Q 014873          147 LCFVELRTVMVA-TDWADQRAMADLAIA-GHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVV  224 (417)
Q Consensus       147 ~~~~~lr~~~~~-~~~~~~~~~~~~~~~-~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvV  224 (417)
                      .....+|+.+.. .+..+.  ...+... +.|..|.+|+++++||+.||.++...  ..+.     .|+...||++.++|
T Consensus       141 iSST~IR~~~~~~g~~~~~--i~~lvP~~~va~~I~~w~~~~r~c~~c~~~~~~~--~~~~-----~~~~~~~~~~~~~v  211 (352)
T 2qjt_B          141 FNATEFRQKFYNGIISKQY--MCSNDPKLGTYNFLTKFMDTQVYQDLVAENNYVI--EYKR-----LWLKAPFKPNFVTV  211 (352)
T ss_dssp             CCHHHHHHHHHTTCCCGGG--CSCSSTTSHHHHHHHHHTTSHHHHHHHHHHHHHH--HHHH-----HHSSSSSCCEEEEE
T ss_pred             CCchHHHHHHhccCcccch--hhhcCChHHHHHHHHHHhcChHHhHhhhhHHHHH--HHHH-----HhcccCCCCCceEE
Confidence            456679988753 321110  0012334 67999999999999999999998322  2232     37889999999888


Q ss_pred             EEEEEecCCCEEEEEEecCC-CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccE----EEEEEeecCCCCCC-CCc
Q 014873          225 IMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV----VYHTSQPWPVGPNS-MPC  298 (417)
Q Consensus       225 ivlvi~~~~~kVLL~rr~~~-~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v----~~~~s~~~~~~~~~-~p~  298 (417)
                      .++|+.  +++|||+||.+. .+|.|++|||+||+|||+++||+||++||||+++...    .+...+.|.+.... ...
T Consensus       212 ~~vv~~--~~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~  289 (352)
T 2qjt_B          212 DALVIV--NDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDRSVRGR  289 (352)
T ss_dssp             EEEEEE--TTEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEECCTTSCTTSE
T ss_pred             EEEEEE--CCEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEecCCCCCCCcc
Confidence            888875  689999999863 3589999999999999999999999999999998632    13334444432111 123


Q ss_pred             EEEEEEEEEEeccc--cc-CCcccccceEEEeh-hhHHHH--hhhhhHHHHHHHHHH
Q 014873          299 QLMVGFYAYAKSFE--IN-VDKEELEDARWHSR-EDVKKA--LTFAEYIKAQRTAAA  349 (417)
Q Consensus       299 ~l~i~f~a~~~~~~--~~-~~~~E~~~a~Wf~~-del~~~--L~~~~~~~a~~~a~~  349 (417)
                      .++++|++.+..++  .. .+++|+.+++||++ +++.++  ..++.....+..+..
T Consensus       290 ~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~~~~~~~~~~~il~~~~~  346 (352)
T 2qjt_B          290 TISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNICDRMLEDHYQIITILLE  346 (352)
T ss_dssp             EEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHTTTSBSTTHHHHHHHHHH
T ss_pred             EEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhhhhhhChhHHHHHHHHHH
Confidence            56778887765544  22 24689999999999 999984  334444444444443

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.85  E-value=2.2e-20  Score=162.08  Aligned_cols=123  Identities=25%  Similarity=0.299  Sum_probs=91.7

Q ss_pred             EEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC-cEEEEE
Q 014873          225 IMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP-CQLMVG  303 (417)
Q Consensus       225 ivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p-~~l~i~  303 (417)
                      .++|++  +++|||+||.   .|.|++|||+||+|||+++||+||++||||+++..+.+++...+.+...... ...+..
T Consensus         8 g~vv~~--~~~vLL~~r~---~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~   82 (134)
T 3i7u_A            8 GGVLFK--DGEVLLIKTP---SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKTVKY   82 (134)
T ss_dssp             EEEEEE--TTEEEEEECT---TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEE--CCEEEEEEeC---CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceEEEEEEE
Confidence            344444  5899999986   4899999999999999999999999999999998777776654433221111 123344


Q ss_pred             EEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHH
Q 014873          304 FYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQ  353 (417)
Q Consensus       304 f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~  353 (417)
                      |.+....+++.++ +|+.+++||+++++++++.+++.+..+..+.+.+.+
T Consensus        83 f~~~~~~~~~~~~-~E~~~~~W~~~~e~~~~l~~~~~r~il~~a~~l~~k  131 (134)
T 3i7u_A           83 YLMKYKEGEPRPS-WEVKDAKFFPIKEAKKLLKYKGDKEIFEKALKLKEK  131 (134)
T ss_dssp             EEEEEEEECCCCC-TTSSEEEEEEHHHHHHHBCSHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCcCcCC-hhheEEEEEEHHHHhhhcCChHHHHHHHHHHHHHHc
Confidence            5566555555544 789999999999999999998888777766654443

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.84  E-value=2.4e-20  Score=181.03  Aligned_cols=174  Identities=20%  Similarity=0.256  Sum_probs=125.8

Q ss_pred             CCCcccCCcCcEEEEEEEec--C--CCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCee--ccEEEE
Q 014873          212 CKKRIYPRVDPVVIMLVIDR--E--NDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV--GEVVYH  284 (417)
Q Consensus       212 C~~~~ypr~~pvVivlvi~~--~--~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v--~~v~~~  284 (417)
                      |....|+++...|.++|+..  +  +++|||++|.+ +..|.|++|||+||+|||+++||+||++||||+++  ..+..+
T Consensus        30 ~~~~~~~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~l  109 (273)
T 2fml_A           30 QELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQL  109 (273)
T ss_dssp             SCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEE
T ss_pred             hhcccCCCCceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEEE
Confidence            45456777666555555432  2  34999999986 45689999999999999999999999999999764  456666


Q ss_pred             EEeecCCCCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHH------------------------HhhhhhH
Q 014873          285 TSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKK------------------------ALTFAEY  340 (417)
Q Consensus       285 ~s~~~~~~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~------------------------~L~~~~~  340 (417)
                      +.+..+.... ..+.+++.|++.+.... ....+|..+++||+++++.+                        .|+|+|.
T Consensus       110 ~~~~~~~r~~-~~~~~~~~y~a~~~~~~-~~~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~LafdH~  187 (273)
T 2fml_A          110 HSFSRPDRDP-RGWVVTVSYLAFIGEEP-LIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFDHS  187 (273)
T ss_dssp             EEECCTTSST-TSSEEEEEEEEECCCCC-CCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCSTTHH
T ss_pred             EEEcCCCCCC-CceEEEEEEEEEeCCCC-CCCCcceeeEEEEEhhHhhhhhccccchhhhccccccccccCCCcccccHH
Confidence            6654332211 12467788888766544 34567899999999997432                        4678887


Q ss_pred             HHHHHHHHHHHHHhhhhhccccccccccccccCCCCCccCCccchHH--HHHHHHHhc---CcCCCCC
Q 014873          341 IKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAIA--HHLISSWVY---KDAPDGV  403 (417)
Q Consensus       341 ~~a~~~a~~~l~~~~~~~er~~~~~~~~k~~~~~~~~~~lP~~faIA--~~Li~~w~~---~~~~~~~  403 (417)
                      .. +..++.+++.               |+.|.+++..++|+.|||.  +++++..++   ..+++.|
T Consensus       188 ~I-l~~al~rlr~---------------kl~y~~i~~~llp~~FTl~~l~~~ye~i~g~~~~~~~~~n  239 (273)
T 2fml_A          188 EI-IIKAFNRVVD---------------KMEHEPQVLQVLGKDFTITEARKVFAKFLGVDYRSIDHSN  239 (273)
T ss_dssp             HH-HHHHHHHHHH---------------HTTTCCGGGGGGCSCBCHHHHHHHHHHHHTSCGGGSCHHH
T ss_pred             HH-HHHHHHHHHH---------------HhcCCcHHHHhCCccccHHHHHHHHHHHhCCCccccChHH
Confidence            64 3445555544               6778888889999999999  899999998   6666544

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.82  E-value=4.2e-20  Score=182.79  Aligned_cols=152  Identities=20%  Similarity=0.229  Sum_probs=108.2

Q ss_pred             HHHHHHHhhhhccCccccCCCcceeccCccceeecCCCCCCcccCCcCcEEEEEEEecCCCEEEEEEecCC-CCCcEEee
Q 014873          174 GHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRF-VPRMWSCI  252 (417)
Q Consensus       174 ~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~-~~g~WslP  252 (417)
                      +.+..|..|+.+++||..|+......  ..+.     .|+...||++.++|.++|++  +++|||+||.+. .+|.|++|
T Consensus       163 ~v~~~i~~~~~~~r~~~l~~~~~~~~--~~~~-----~~~~~~~~~~~~~v~~vi~~--~~~vLL~~r~~~~~~g~w~lP  233 (341)
T 2qjo_A          163 AIADYLQTFQKSERYIALCDEYQFLQ--AYKQ-----AWATAPYAPTFITTDAVVVQ--AGHVLMVRRQAKPGLGLIALP  233 (341)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHHHHHH--HHHH-----TTTTSSSCCCEEEEEEEEEE--TTEEEEEECCSSSSTTCEECS
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHH--HHHh-----hhhccCCCCCceEEEEEEEe--CCEEEEEEecCCCCCCeEECC
Confidence            45778999999999999998866322  1121     37788899998888888775  689999999863 36899999


Q ss_pred             eeeccCCCCHHHHHHHHHHHHhCCeeccEEEE----EEeecCCCCCC-CCcEEEEEEEEEEecccc-c-CCcccccceEE
Q 014873          253 AGFIEPGESLEEAVRRETWEETGIEVGEVVYH----TSQPWPVGPNS-MPCQLMVGFYAYAKSFEI-N-VDKEELEDARW  325 (417)
Q Consensus       253 gG~VE~GEtleeAa~REv~EEtGl~v~~v~~~----~s~~~~~~~~~-~p~~l~i~f~a~~~~~~~-~-~~~~E~~~a~W  325 (417)
                      ||+||+|||+++||+||++||||+++....++    ..+.|...... ....++++|++....++. . .+++|+.+++|
T Consensus       234 gG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W  313 (341)
T 2qjo_A          234 GGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWW  313 (341)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECCTTSCTTSCEEEEEEEEECCSSSCCCCC------CEEE
T ss_pred             CCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEeCCCCCCCCcEEEEEEEEEecCCCcCccCCCCceeeEEE
Confidence            99999999999999999999999998643221    12233321111 123567788877654442 2 35688999999


Q ss_pred             EehhhHHHH
Q 014873          326 HSREDVKKA  334 (417)
Q Consensus       326 f~~del~~~  334 (417)
                      ++++++.++
T Consensus       314 ~~~~el~~~  322 (341)
T 2qjo_A          314 MSLADLYAQ  322 (341)
T ss_dssp             EEHHHHHHT
T ss_pred             eeHHHHhhh
Confidence            999999984

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.80  E-value=9.2e-20  Score=160.94  Aligned_cols=138  Identities=23%  Similarity=0.311  Sum_probs=97.4

Q ss_pred             CCCCcccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecC
Q 014873          211 SCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP  290 (417)
Q Consensus       211 ~C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~  290 (417)
                      +||.+.|.+..    +..+++++.++||++|.. .+|.|.+|||+||+|||+++||+||++||||+.+.....+....+.
T Consensus         5 a~G~iifr~~~----~~~~~n~~~e~LL~~r~~-~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~   79 (155)
T 3u53_A            5 ACGLIIFRRCL----IPKVDNNAIEFLLLQASD-GIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRE   79 (155)
T ss_dssp             EEEEEEEEECC----CSSSSSCSEEEEEEEESS-SSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEE
T ss_pred             EeEEEEEcccc----ccceeCCCcEEEEEEecC-CCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeee
Confidence            47777775421    112345577999999874 4578999999999999999999999999999998776655443222


Q ss_pred             CC-CCCCCcEEEEEEEEEEecccccC-CcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHH
Q 014873          291 VG-PNSMPCQLMVGFYAYAKSFEINV-DKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQ  353 (417)
Q Consensus       291 ~~-~~~~p~~l~i~f~a~~~~~~~~~-~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~  353 (417)
                      .. ...........|++........+ ..+|+.+++||+++|+.+++.++..+.++..+.+.|..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~ea~~~~~~~~~~~~L~~a~~~L~~  144 (155)
T 3u53_A           80 LNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAALQEGHQFLCS  144 (155)
T ss_dssp             EEEEETTEEEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred             eecCCCcceeEEEEEEEEEeccCCccCCCcceeEEEEeEHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence            11 01112234455555555433332 34789999999999999999998888887777666644

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.78  E-value=3.7e-18  Score=144.19  Aligned_cols=117  Identities=28%  Similarity=0.381  Sum_probs=89.0

Q ss_pred             EEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEE
Q 014873          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG  303 (417)
Q Consensus       224 Vivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~  303 (417)
                      +.+++++ .+++|||+||.+   |.|++|||++|+|||+++||+||++||||+++..+.+++...+.+..   ....+..
T Consensus         5 ~~~vi~~-~~~~vLl~~r~~---g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~---~~~~~~~   77 (126)
T 1vcd_A            5 AGGVVFN-AKREVLLLRDRM---GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPK---GVEREVH   77 (126)
T ss_dssp             EEEEEEC-TTSCEEEEECTT---SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTT---SCEEEEE
T ss_pred             EEEEEEc-CCCEEEEEEECC---CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecCC---ceEEEEE
Confidence            3444554 367999999875   89999999999999999999999999999999888877776555421   2244555


Q ss_pred             EEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHH
Q 014873          304 FYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAA  348 (417)
Q Consensus       304 f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~  348 (417)
                      |.+....+. ..+..|..+++|++++++.+.+.+++.++....+.
T Consensus        78 ~~~~~~~~~-~~~~~e~~~~~w~~~~el~~~~~~~~~~~~l~~~~  121 (126)
T 1vcd_A           78 WFLMRGEGA-PRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVAL  121 (126)
T ss_dssp             EEEEEEESC-CCCCTTCCEEEEECHHHHHHHBCSHHHHHHHHHHH
T ss_pred             EEEEEcCCC-CCCCcceeeeEEcCHHHHHHhhcChhHHHHHHHHH
Confidence            666554444 33457889999999999999888877766655443

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.78  E-value=2.2e-18  Score=151.53  Aligned_cols=123  Identities=25%  Similarity=0.337  Sum_probs=95.6

Q ss_pred             cEEEEEEEecCCCEEEEEEecCC-CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEE
Q 014873          222 PVVIMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL  300 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~~-~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l  300 (417)
                      .+|.+++++ .+++|||+||.+. ..|.|++|||+||+|||+++||+||++||||+++..+.+++.....      ...+
T Consensus        21 ~~v~~~i~~-~~~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~------~~~~   93 (156)
T 3gg6_A           21 YVVLAVFLS-EQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERG------PSWV   93 (156)
T ss_dssp             EEEEEECBC-TTSEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESS------TTEE
T ss_pred             EEEEEEEEe-CCCEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcCC------CCEE
Confidence            344445554 4789999999863 3789999999999999999999999999999999888888776543      3456


Q ss_pred             EEEEEEEEeccccc---CCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHH
Q 014873          301 MVGFYAYAKSFEIN---VDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKV  351 (417)
Q Consensus       301 ~i~f~a~~~~~~~~---~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l  351 (417)
                      .+.|.+........   .+++|+.+++|++++++++++..+.+......+...+
T Consensus        94 ~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~  147 (156)
T 3gg6_A           94 RFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPLRAHDILHLVELAAQYR  147 (156)
T ss_dssp             EEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSBSCTHHHHHHHHHHHHH
T ss_pred             EEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCcccccchhHHHHHHHHHHHh
Confidence            67777776544433   2457899999999999999888877777666655544

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.77  E-value=1.1e-17  Score=145.84  Aligned_cols=119  Identities=18%  Similarity=0.243  Sum_probs=86.7

Q ss_pred             EEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccE--EEE--EEe---ecCCCCCCCCcEE
Q 014873          228 VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV--VYH--TSQ---PWPVGPNSMPCQL  300 (417)
Q Consensus       228 vi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v--~~~--~s~---~~~~~~~~~p~~l  300 (417)
                      ....++++|||++|.+  .|.|.+|||+||+|||+++||+||++||||+++...  ...  ...   .|.+ +. .....
T Consensus        14 ~~~~~~~~vLl~~r~~--~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~   89 (149)
T 3son_A           14 IKTEANYQFGVLHRTD--ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSF-NK-PYVVP   89 (149)
T ss_dssp             EECSSSEEEEEEEESS--SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTCS-SS-CSEEE
T ss_pred             EecCCCeEEEEEEEcC--CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceeecc-CC-ceEeE
Confidence            3344467999999986  499999999999999999999999999999998643  111  111   2222 11 12344


Q ss_pred             EEEEEEEEe--cccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHH
Q 014873          301 MVGFYAYAK--SFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKV  351 (417)
Q Consensus       301 ~i~f~a~~~--~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l  351 (417)
                      ++.|.+...  ..++.+ ++|+.+++|++++++.+++.++..+.++..+..++
T Consensus        90 ~~~f~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l  141 (149)
T 3son_A           90 EYCFAIDLTSCSYQVTL-SLEHSELRWVSYESAIQLLEWDSNKTALYELNERL  141 (149)
T ss_dssp             EEEEEEECTTTGGGCCC-CTTEEEEEEECHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCCcccC-CCceeeEEEeCHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            556777665  345555 48999999999999999888888877776665555

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.76  E-value=2.2e-18  Score=159.94  Aligned_cols=134  Identities=15%  Similarity=0.146  Sum_probs=98.1

Q ss_pred             CCCcccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 014873          212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV  291 (417)
Q Consensus       212 C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~  291 (417)
                      |+...|++..++|.++|++  +++|||+||..  .|.|++|||++|+|||+++||+||++||||+.+....+++...+..
T Consensus        59 ~~~~~~~~~~~~v~~vv~~--~~~vLLv~r~~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~~~  134 (205)
T 3q1p_A           59 ASETGYQTPKVDIRAVVFQ--NEKLLFVKEKS--DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEK  134 (205)
T ss_dssp             SCCCSSCCCEEEEEEEEEE--TTEEEEEEC-----CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEHHH
T ss_pred             ccccCCCCCcceEEEEEEE--CCEEEEEEEcC--CCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEeccc
Confidence            4445588878877777776  68999999873  6899999999999999999999999999999998777777665431


Q ss_pred             C--CCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHH
Q 014873          292 G--PNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAK  350 (417)
Q Consensus       292 ~--~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~  350 (417)
                      .  +......+.+.|.+....+.+..+ .|+.+++||++++++++...+........+...
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~E~~~~~w~~~~el~~l~~~~~~~~~i~~~~~~  194 (205)
T 3q1p_A          135 HQPSPSATHVYKIFIGCEIIGGEKKTS-IETEEVEFFGENELPNLSIARNTEDQIKEMFAY  194 (205)
T ss_dssp             HSCCCCSSCEEEEEEEEEEEEECCCCC-TTSCCEEEECTTSCCCBCTTTCCHHHHHHHHHH
T ss_pred             cCCCCCCceEEEEEEEEEecCCccCCC-CcceEEEEEeHHHhhhcCCCccHHHHHHHHHHH
Confidence            1  122233455666666655555554 899999999999999865555555555444433

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.76  E-value=8e-18  Score=145.12  Aligned_cols=123  Identities=20%  Similarity=0.125  Sum_probs=91.2

Q ss_pred             CCcccCCcCcEEEEEEEe-cCCCE--EEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeec
Q 014873          213 KKRIYPRVDPVVIMLVID-RENDR--VLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW  289 (417)
Q Consensus       213 ~~~~ypr~~pvVivlvi~-~~~~k--VLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~  289 (417)
                      ++. |+++.++|.++|++ +.+++  |||+||.+.+ +.|++|||++|+|||+++||+||++||||+.+....+++...+
T Consensus         2 ~~~-y~~p~~~v~~vi~~~~~~~~~~vLl~~r~~~~-~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~   79 (139)
T 2yyh_A            2 GFN-VKTPLLATDVIIRLWDGENFKGIVLIERKYPP-VGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSD   79 (139)
T ss_dssp             CCC-CCCCEEEEEEEEEEEETTEEEEEEEEEECSSS-CSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECC
T ss_pred             Ccc-ccCCeEEEEEEEEEEcCCCcEEEEEEEecCCC-CcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEECC
Confidence            345 77777777766665 12567  9999998643 4499999999999999999999999999999987777776655


Q ss_pred             CCCCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHH-HHhhhhhH
Q 014873          290 PVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVK-KALTFAEY  340 (417)
Q Consensus       290 ~~~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~-~~L~~~~~  340 (417)
                      +.... ....++..|.+... +.+. ..+|+.+++|++++++. +.+.+++.
T Consensus        80 ~~~~~-~~~~~~~~f~~~~~-~~~~-~~~e~~~~~W~~~~el~~~~l~~~~~  128 (139)
T 2yyh_A           80 PERDP-RAHVVSVVWIGDAQ-GEPK-AGSDAKKVKVYRLEEIPLDKLVFDHK  128 (139)
T ss_dssp             TTSCT-TSCEEEEEEEEEEE-SCCC-CCTTEEEEEEECTTSCCGGGBCTTHH
T ss_pred             CCcCC-CceEEEEEEEEecC-CccC-CCCCcceEEEEEHHHCCHhhcCCCHH
Confidence            43211 12356667777663 3333 45788999999999999 55777653

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.76  E-value=1.5e-17  Score=142.56  Aligned_cols=115  Identities=23%  Similarity=0.257  Sum_probs=84.9

Q ss_pred             CCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEE----EEeecCCCCCCCCcEEEEEEEEEE
Q 014873          233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYH----TSQPWPVGPNSMPCQLMVGFYAYA  308 (417)
Q Consensus       233 ~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~----~s~~~~~~~~~~p~~l~i~f~a~~  308 (417)
                      +++|||+||. ..+|.|.+|||++|+|||+++||+||++||||+.+..+...    +...+...   .....+..|.+..
T Consensus        17 ~~~vLl~~r~-~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~f~~~~   92 (138)
T 1ktg_A           17 KIEFLLLQAS-YPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAK---GKPKSVKYWLAKL   92 (138)
T ss_dssp             EEEEEEEEES-STTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEET---TEEEEEEEEEEEE
T ss_pred             CcEEEEEEcc-CCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeC---CCceEEEEEEEEe
Confidence            3689999987 44679999999999999999999999999999976555433    33333321   1234556666666


Q ss_pred             ecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHH
Q 014873          309 KSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKV  351 (417)
Q Consensus       309 ~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l  351 (417)
                      .......+++|+.+++|++++++.+++.+++.+.....+..++
T Consensus        93 ~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l  135 (138)
T 1ktg_A           93 NNPDDVQLSHEHQNWKWCELEDAIKIADYAEMGSLLRKFSAFL  135 (138)
T ss_dssp             CSCCCCCCCTTEEEEEEECHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             cCCcccCCCchhcEeEeccHHHHHHhhccchHHHHHHHHHHHh
Confidence            5433344568999999999999999888887777766655544

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.76  E-value=5.7e-18  Score=151.26  Aligned_cols=121  Identities=28%  Similarity=0.300  Sum_probs=82.2

Q ss_pred             CCCcccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 014873          212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV  291 (417)
Q Consensus       212 C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~  291 (417)
                      |.......+...|.+++++  +++|||+||.+ ..|.|.+|||++|+|||+++||+||++||||+++....+++...++.
T Consensus        14 ~~~~~~~~~~~~v~~ii~~--~~~vLL~~r~~-~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~   90 (171)
T 3id9_A           14 RRLYIENIMQVRVTGILIE--DEKVLLVKQKV-ANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCDKPD   90 (171)
T ss_dssp             --------CEEEEEEEEEE--TTEEEEEECSS-TTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEETT
T ss_pred             hhhccCCceEEEEEEEEEE--CCEEEEEEEEC-CCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEEEcccC
Confidence            3333334445556666665  58999999986 37899999999999999999999999999999997777776665553


Q ss_pred             CCCCCCcEEEEEEEEEEecccccC-----CcccccceEEEehhhHHHHhhhh
Q 014873          292 GPNSMPCQLMVGFYAYAKSFEINV-----DKEELEDARWHSREDVKKALTFA  338 (417)
Q Consensus       292 ~~~~~p~~l~i~f~a~~~~~~~~~-----~~~E~~~a~Wf~~del~~~L~~~  338 (417)
                      .   ......+.|.+....+....     +.+|+.+++|++++++.++...+
T Consensus        91 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~  139 (171)
T 3id9_A           91 A---SPSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYYGFSE  139 (171)
T ss_dssp             S---SSCEEEEEEEEEEC-------------CCCCCEEEEETGGGGGGTCCT
T ss_pred             C---CCcEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhCCCCH
Confidence            2   23355566666655444333     55889999999999999854333

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.76  E-value=6.1e-18  Score=147.74  Aligned_cols=113  Identities=22%  Similarity=0.218  Sum_probs=77.0

Q ss_pred             cEEEEEEEecCCCEEEEEEecCCC--CCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcE
Q 014873          222 PVVIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQ  299 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~~~--~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~  299 (417)
                      .+|.+++++. +++|||+++.+..  .+.|++|||++|+|||+++||+||++||||+++..+.+++.....  +. ....
T Consensus         6 ~~v~vi~~~~-~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~--~~-~~~~   81 (145)
T 2w4e_A            6 RAVFILPVTA-QGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQ--PS-ISGV   81 (145)
T ss_dssp             EEEEEEEEET-TSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBSC--TT-TCCC
T ss_pred             CEEEEEEEcC-CCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecCcCC--CC-ccCc
Confidence            3555555654 6899998876543  348999999999999999999999999999999877776653211  11 1223


Q ss_pred             EEEEEEEEE-ecccccCCcccccceEEEehhhHHHHhhhh
Q 014873          300 LMVGFYAYA-KSFEINVDKEELEDARWHSREDVKKALTFA  338 (417)
Q Consensus       300 l~i~f~a~~-~~~~~~~~~~E~~~a~Wf~~del~~~L~~~  338 (417)
                      .+..|++.. ..+....+++|+.+++|++++++.+++..+
T Consensus        82 ~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~  121 (145)
T 2w4e_A           82 VFYPLLALGVTLGAAQLEDTETIERVVLPLAEVYRMLEAG  121 (145)
T ss_dssp             EEEEEEEEEEEEC--------CEEEEEEEHHHHHHHHHHT
T ss_pred             eEEEEEEEecccCCCCCCCCCeEEEEEEeHHHHHHHHHcC
Confidence            455666653 233445567899999999999999976543

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.76  E-value=1.3e-17  Score=146.50  Aligned_cols=120  Identities=21%  Similarity=0.261  Sum_probs=91.8

Q ss_pred             CCcCcEEEEEEEecCCCEEEEEEecC-----CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC
Q 014873          218 PRVDPVVIMLVIDRENDRVLLSRQSR-----FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG  292 (417)
Q Consensus       218 pr~~pvVivlvi~~~~~kVLL~rr~~-----~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~  292 (417)
                      |....++.+++++. +++|||++|.+     ..+|.|.+|||++|+|||+++||+||++||||+.+..+.+++...+.+.
T Consensus        10 ~~~~~~~~~vi~~~-~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~   88 (159)
T 1sjy_A           10 PVELRAAGVVLLNE-RGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFP   88 (159)
T ss_dssp             CCCEEEEEEEEBCT-TCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECT
T ss_pred             CeEEEeEEEEEEeC-CCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEecccC
Confidence            44455666666654 68999999985     2568999999999999999999999999999999988887777664432


Q ss_pred             CCCCCcEEEEEEEEEEeccc-ccC-CcccccceEEEehhhHHHHhhhhhH
Q 014873          293 PNSMPCQLMVGFYAYAKSFE-INV-DKEELEDARWHSREDVKKALTFAEY  340 (417)
Q Consensus       293 ~~~~p~~l~i~f~a~~~~~~-~~~-~~~E~~~a~Wf~~del~~~L~~~~~  340 (417)
                      ..  ....+..|.+....+. +.. +++|+.+++|++++++.+++..+.+
T Consensus        89 ~~--~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~  136 (159)
T 1sjy_A           89 DG--VLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAAGQI  136 (159)
T ss_dssp             TS--CEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHTTCB
T ss_pred             CC--ceEEEEEEEEEccCCCccccCCCCceeEEEEecHHHHHHhhhcccc
Confidence            21  3456667777765555 555 6789999999999999997665443

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.76  E-value=1.3e-17  Score=153.23  Aligned_cols=131  Identities=12%  Similarity=0.165  Sum_probs=88.6

Q ss_pred             EEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCe-ecc----EEEEEEeecCCCC--C-
Q 014873          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE-VGE----VVYHTSQPWPVGP--N-  294 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~-v~~----v~~~~s~~~~~~~--~-  294 (417)
                      ++.++|++.++++|||+|+.  ..|.|.+|||+||+|||+++||+||++||||++ +..    +..+.....+...  . 
T Consensus        47 ~~~~vv~~~~~~~vLL~~r~--~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (197)
T 3fcm_A           47 TSSAFAVNKERNKFLMIHHN--IYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGK  124 (197)
T ss_dssp             EEEEEEECTTSCEEEEEEET--TTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECCEEETTE
T ss_pred             EEEEEEEECCCCEEEEEEec--CCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecCccccCc
Confidence            45556666655699999987  368999999999999999999999999999998 321    1111111111000  0 


Q ss_pred             --CCCcEEEEEEEEEEecc-cccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHHhh
Q 014873          295 --SMPCQLMVGFYAYAKSF-EINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMC  355 (417)
Q Consensus       295 --~~p~~l~i~f~a~~~~~-~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~~~  355 (417)
                        .....+.+.|++..... .+..+++|+.+++||+++++.+++..+.....+..+.+++.+..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~~~l~~~~  188 (197)
T 3fcm_A          125 YVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKYCSEPHMIPIYEKLINKLKTQS  188 (197)
T ss_dssp             EECCEEEEEEEEEEECCTTSCCCCCC----CEEEEEGGGHHHHCCCGGGHHHHHHHHHHHHC--
T ss_pred             ccCCceeEEEEEEEEeCCCcccCCCcccccceEEccHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence              01123446666665543 35566789999999999999999999999888888888876643

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.75  E-value=2e-17  Score=142.95  Aligned_cols=115  Identities=18%  Similarity=0.100  Sum_probs=84.6

Q ss_pred             cEEEEEEEecCCCEEEEEEecCC----CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC
Q 014873          222 PVVIMLVIDRENDRVLLSRQSRF----VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP  297 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~~----~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p  297 (417)
                      .++.+++.+  +++|||+||.+.    .+|.|.+|||++|+|||+++||+||++||||+.+....+++...+.+..   .
T Consensus         7 ~~v~~vi~~--~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~---~   81 (140)
T 3gwy_A            7 EVVAAVIRL--GEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPD---F   81 (140)
T ss_dssp             EEEEEEEEE--TTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSS---C
T ss_pred             EEEEEEEEe--CCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCC---c
Confidence            344455554  689999999853    5789999999999999999999999999999999888888877665432   2


Q ss_pred             cEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHH
Q 014873          298 CQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKA  343 (417)
Q Consensus       298 ~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a  343 (417)
                      ...+..|.+....+.+  +.+|..+++|++++++.++...+..++.
T Consensus        82 ~~~~~~f~~~~~~~~~--~~~E~~~~~W~~~~el~~~~~~~~~~~i  125 (140)
T 3gwy_A           82 EITMHAFLCHPVGQRY--VLKEHIAAQWLSTREMAILDWAEADKPI  125 (140)
T ss_dssp             CEEEEEEEEEECCSCC--CCCSSCEEEEECHHHHTTSCBCGGGHHH
T ss_pred             eEEEEEEEEEecCCcc--cccccceeEeccHHHHhhCCCCcccHHH
Confidence            3566667776655433  3578999999999999985444444443

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.75  E-value=2.4e-17  Score=144.21  Aligned_cols=97  Identities=25%  Similarity=0.397  Sum_probs=78.3

Q ss_pred             CCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEeccc
Q 014873          233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFE  312 (417)
Q Consensus       233 ~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~~~  312 (417)
                      +++|||+||.....|.|.+|||++|+|||+++||+||++||||+++....+++...+....  ....+.+.|.+......
T Consensus        15 ~~~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~   92 (153)
T 3shd_A           15 EGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPD--KTPFLRFLFAIELEQIC   92 (153)
T ss_dssp             TTEEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTT--SCCEEEEEEEEECSSCC
T ss_pred             CCEEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEecCC--CceEEEEEEEEEccccC
Confidence            6899999997556789999999999999999999999999999999887777776555431  23455666777655433


Q ss_pred             -ccCCcccccceEEEehhhH
Q 014873          313 -INVDKEELEDARWHSREDV  331 (417)
Q Consensus       313 -~~~~~~E~~~a~Wf~~del  331 (417)
                       ...+++|+.+++|++++++
T Consensus        93 ~~~~~~~E~~~~~W~~~~el  112 (153)
T 3shd_A           93 PTQPHDSDIDCCRWVSAEEI  112 (153)
T ss_dssp             CCCCCSTTCCEEEEECHHHH
T ss_pred             cCCCCcccceeeEEecHHHh
Confidence             4556789999999999999

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.75  E-value=2.4e-17  Score=151.85  Aligned_cols=126  Identities=22%  Similarity=0.265  Sum_probs=84.8

Q ss_pred             ccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC
Q 014873          216 IYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS  295 (417)
Q Consensus       216 ~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~  295 (417)
                      .+++....|.+++++.++++|||+||....+|.|++|||+||+|||+++||+||++||||+.+.....++.......+..
T Consensus        21 ~~~~~~v~v~~~v~~~~~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~~~~~~~~~  100 (199)
T 3h95_A           21 QSMSHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGA  100 (199)
T ss_dssp             -----CCEEEEEEEETTTTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECC-----
T ss_pred             ccCcccceEEEEEEeCCCCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEEeeecCCCC
Confidence            44555666777777766789999999866689999999999999999999999999999999876665553221111111


Q ss_pred             CCcEEEEEEEEEEe--cccccCCcccccceEEEehhhHHHHhhhhhHHH
Q 014873          296 MPCQLMVGFYAYAK--SFEINVDKEELEDARWHSREDVKKALTFAEYIK  342 (417)
Q Consensus       296 ~p~~l~i~f~a~~~--~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~  342 (417)
                       .....+.|.+...  ...+.++++|+.+++|++++++.++.....+..
T Consensus       101 -~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~  148 (199)
T 3h95_A          101 -FGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTENTTPITS  148 (199)
T ss_dssp             -----CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCSSBCHHHH
T ss_pred             -ceeEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhhhhcChHHH
Confidence             1122233344433  334556678999999999999998654444433

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.74  E-value=8.7e-18  Score=153.03  Aligned_cols=119  Identities=18%  Similarity=0.227  Sum_probs=88.1

Q ss_pred             CCEEEEEEecC--------CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEE
Q 014873          233 NDRVLLSRQSR--------FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGF  304 (417)
Q Consensus       233 ~~kVLL~rr~~--------~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f  304 (417)
                      +++|||++|.+        ...|.|.+|||+||+|||+++||+||++||||+++..+.+++.+.++..... ...+.+.|
T Consensus        45 ~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~-~~~~~~~~  123 (187)
T 3i9x_A           45 TLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVFDKPGRDPR-GWIISRAF  123 (187)
T ss_dssp             EEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEEECCTTSSTT-SSEEEEEE
T ss_pred             CCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEcCCccCCC-CCEEEEEE
Confidence            36899999942        4678999999999999999999999999999999988888887765532211 23556666


Q ss_pred             EEEEeccc--ccCCcccccceEEEehhhHHHH-hhhhhHHHHHHHHHHHHHH
Q 014873          305 YAYAKSFE--INVDKEELEDARWHSREDVKKA-LTFAEYIKAQRTAAAKVEQ  353 (417)
Q Consensus       305 ~a~~~~~~--~~~~~~E~~~a~Wf~~del~~~-L~~~~~~~a~~~a~~~l~~  353 (417)
                      ++.+....  .....+|+.+++||+++++.++ +.++ ....+..++.+++.
T Consensus       124 ~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~-~~~il~~a~~~l~~  174 (187)
T 3i9x_A          124 YAIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAFD-HLDMLKKAFSAITE  174 (187)
T ss_dssp             EEECCHHHHHHHHHSTTTTTEEEEEHHHHTTSCBSTT-HHHHHHHHHHHHHH
T ss_pred             EEEEcCcccCCcCCCCceeEEEEEeHHHcccCCCCcc-HHHHHHHHHHHHHh
Confidence            66654322  1234578999999999999974 5544 44555666666655

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.74  E-value=6.2e-18  Score=156.94  Aligned_cols=132  Identities=16%  Similarity=0.169  Sum_probs=92.9

Q ss_pred             CCCcccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 014873          212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV  291 (417)
Q Consensus       212 C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~  291 (417)
                      |....|++...+|.++|++  +++|||+||.   .|.|++|||++|+|||+++||+||++||||+++..+.+++...+..
T Consensus        61 ~~~~~y~~~~~~v~~vv~~--~~~vLLvrr~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~  135 (206)
T 3o8s_A           61 CNETGYQTPKLDTRAAIFQ--EDKILLVQEN---DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHK  135 (206)
T ss_dssp             -------CCEEEEEEEEEE--TTEEEEEECT---TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHH
T ss_pred             ccccCCCCCCccEEEEEEE--CCEEEEEEec---CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEeccc
Confidence            3445578777777777776  4899999987   7899999999999999999999999999999998888887765321


Q ss_pred             C--CCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHH
Q 014873          292 G--PNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAA  349 (417)
Q Consensus       292 ~--~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~  349 (417)
                      .  +........+.|.+....+.+..+ .|..+++||++++++++.......+.+..+..
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~E~~~~~w~~~~el~~l~~~~~~~~~l~~~~~  194 (206)
T 3o8s_A          136 NNPAKSAHRVTKVFILCRLLGGEFQPN-SETVASGFFSLDDLPPLYLGKNTAEQLALCLE  194 (206)
T ss_dssp             HCC-----CEEEEEEEEEEEEECCCCC-SSCSEEEEECTTSCCCBCTTTCCHHHHHHHHH
T ss_pred             cCCCCCCceEEEEEEEEEecCCeecCC-CCceEEEEEeHHHhhhccCCCchHHHHHHHHH
Confidence            1  111123445556666655555544 89999999999999986555555555544444

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.74  E-value=2.6e-17  Score=142.54  Aligned_cols=124  Identities=20%  Similarity=0.140  Sum_probs=87.0

Q ss_pred             CcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecC-CCCCCCC
Q 014873          219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP-VGPNSMP  297 (417)
Q Consensus       219 r~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~-~~~~~~p  297 (417)
                      +..+.+.++|++.++++|||+||.   .|.|.+|||++|+|||+++||+||++||||+.+..+.+++..... +......
T Consensus        16 ~~~~~~~~vi~~~~~~~vLl~~r~---~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   92 (148)
T 2azw_A           16 QTRYAAYIIVSKPENNTMVLVQAP---NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQT   92 (148)
T ss_dssp             EECCEEEEECEEGGGTEEEEEECT---TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTTTE
T ss_pred             eeeeEEEEEEECCCCCeEEEEEcC---CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCCCCc
Confidence            344556666666546899999974   489999999999999999999999999999999877766654211 1111111


Q ss_pred             --cEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHH
Q 014873          298 --CQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRT  346 (417)
Q Consensus       298 --~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~  346 (417)
                        ...+..|.+....... ...+|+.+++|++++++.+++..+..+..+..
T Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~  142 (148)
T 2azw_A           93 AYYNPGYFYVANTWRQLS-EPLERTNTLHWVAPEEAVRLLKRGSHRWAVEK  142 (148)
T ss_dssp             EEEEEEEEEEEEEEEECS-SCC-CCSEEEEECHHHHHHHBSCHHHHHHHHH
T ss_pred             ceEEEEEEEEEEcCcCCc-CCCCceeeEEEeeHHHHHhhhcchhHHHHHHH
Confidence              2334555555543332 23478889999999999998877766655443

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.74  E-value=4.1e-17  Score=142.32  Aligned_cols=101  Identities=27%  Similarity=0.329  Sum_probs=77.9

Q ss_pred             CCEEEEEEecCCC-CCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEecc
Q 014873          233 NDRVLLSRQSRFV-PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSF  311 (417)
Q Consensus       233 ~~kVLL~rr~~~~-~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~~  311 (417)
                      +++|||+||.+.. +|.|.+|||+||+|||+++||+||++||||+++....+++...+..... ....+++.|.+.....
T Consensus        18 ~~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~   96 (153)
T 2b0v_A           18 DDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASN-GTTYLRFTFSGQVVSF   96 (153)
T ss_dssp             TTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTT-TEEEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCC-CcEEEEEEEEEEeCCC
Confidence            6899999998644 7899999999999999999999999999999998777777664443211 1234455666665443


Q ss_pred             cc-cCCcccccceEEEehhhHHHH
Q 014873          312 EI-NVDKEELEDARWHSREDVKKA  334 (417)
Q Consensus       312 ~~-~~~~~E~~~a~Wf~~del~~~  334 (417)
                      .. ...++|+.+++|++++++.++
T Consensus        97 ~~~~~~~~e~~~~~W~~~~el~~~  120 (153)
T 2b0v_A           97 DPDRKLDTGIVRAAWFSIDEIRAK  120 (153)
T ss_dssp             CTTSCCCTTEEEEEEEEHHHHHHT
T ss_pred             CCCCCCCCCeeeEEEecHHHHhhh
Confidence            32 345678999999999999984

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.74  E-value=2.8e-17  Score=142.26  Aligned_cols=127  Identities=19%  Similarity=0.275  Sum_probs=86.7

Q ss_pred             cccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeecc--EEEEEEe---ec
Q 014873          215 RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE--VVYHTSQ---PW  289 (417)
Q Consensus       215 ~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~--v~~~~s~---~~  289 (417)
                      +.|++. .+|.+++++.++++|||++|... +|.|.+|||++|+|||+++||+||++||||+.+..  +.+++..   .+
T Consensus         4 m~~~~~-~~v~~~i~~~~~~~vLl~~r~~~-~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   81 (150)
T 2o1c_A            4 KVYKRP-VSILVVIYAQDTKRVLMLQRRDD-PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEF   81 (150)
T ss_dssp             CCCBCS-EEEEEEEEETTTCEEEEEECSSS-TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEE
T ss_pred             ccccCc-eEEEEEEEeCCCCEEEEEEecCC-CCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceeee
Confidence            345543 34555666654589999998754 68999999999999999999999999999998854  2233221   11


Q ss_pred             --------CCCCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHH
Q 014873          290 --------PVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQR  345 (417)
Q Consensus       290 --------~~~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~  345 (417)
                              .+.. ......+..|.+....... ...+|+.+++|++++++.++...+..+.++.
T Consensus        82 ~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~-~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~  143 (150)
T 2o1c_A           82 EIFSHLRHRYAP-GVTRNTESWFCLALPHERQ-IVFTEHLAYKWLDAPAAAALTKSWSNRQAIE  143 (150)
T ss_dssp             ECCGGGGGGBCT-TCCEEEEEEEEEEESSCCC-CCCSSSSCEEEEEHHHHHHHCSCHHHHHHHH
T ss_pred             eeecccccccCC-CCcceEEEEEEEEcCCCCC-cChhHhhccEeecHHHHHhhhcCHHHHHHHH
Confidence                    1111 1123556667666654333 2347899999999999999766555554444

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.73  E-value=4.3e-17  Score=145.91  Aligned_cols=119  Identities=29%  Similarity=0.327  Sum_probs=83.2

Q ss_pred             ccCCcCcEEEEEEEecCCCEEEEEEecCC--CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC
Q 014873          216 IYPRVDPVVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP  293 (417)
Q Consensus       216 ~ypr~~pvVivlvi~~~~~kVLL~rr~~~--~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~  293 (417)
                      .|.+..++|.+++++  +++|||++|.+.  .+|.|.+|||++|+|||+++||+||++||||+ +..+.+++......+ 
T Consensus        29 ~~~~~~~~v~vii~~--~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~-  104 (170)
T 1v8y_A           29 EIVEHKPAVAVIALR--EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVSPG-  104 (170)
T ss_dssp             EEEEECCEEEEEEEE--TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESCTT-
T ss_pred             EEEecCCeEEEEEEE--CCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecCCC-
Confidence            333334566666776  689999998763  46899999999999999999999999999999 888888776543222 


Q ss_pred             CCCCcEEEEEEEEEEec-ccccCCcccccceEEEehhhHHHHhhhhhH
Q 014873          294 NSMPCQLMVGFYAYAKS-FEINVDKEELEDARWHSREDVKKALTFAEY  340 (417)
Q Consensus       294 ~~~p~~l~i~f~a~~~~-~~~~~~~~E~~~a~Wf~~del~~~L~~~~~  340 (417)
                        .....+..|++.... .....+++|+.+++|++++++.+++..+.+
T Consensus       105 --~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~  150 (170)
T 1v8y_A          105 --FTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQRGEV  150 (170)
T ss_dssp             --TBCCEEEEEEEEEEEECC--------CEEEEECHHHHHHHHHTTSC
T ss_pred             --ccccEEEEEEEEeccccCCCCCCCceEEEEEEEHHHHHHHHHCCCE
Confidence              123455566665433 344456789999999999999997765444

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.72  E-value=3.2e-17  Score=145.06  Aligned_cols=116  Identities=22%  Similarity=0.210  Sum_probs=86.1

Q ss_pred             cCCcCcEEEEEEEecCCCEEEEEEecCC-CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC
Q 014873          217 YPRVDPVVIMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS  295 (417)
Q Consensus       217 ypr~~pvVivlvi~~~~~kVLL~rr~~~-~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~  295 (417)
                      .++...+|.++|++  +++|||+||.+. ..|.|.+|||+||+|||+++||+||++||||+++..+.+++...+.+... 
T Consensus        25 ~~~~~~~v~~vi~~--~~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~-  101 (157)
T 4dyw_A           25 TEQPRVGCGAAIVR--DGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVDHIDAAN-  101 (157)
T ss_dssp             -CCCEEEEEEEEEE--TTEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEEEEEEETTT-
T ss_pred             CCCceeEEEEEEEE--CCEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEeeccCC-
Confidence            33444555566666  689999999863 57899999999999999999999999999999998777777665543211 


Q ss_pred             CCcEEEEEEEEEEecccc-cCCcccccceEEEehhhHHHHh
Q 014873          296 MPCQLMVGFYAYAKSFEI-NVDKEELEDARWHSREDVKKAL  335 (417)
Q Consensus       296 ~p~~l~i~f~a~~~~~~~-~~~~~E~~~a~Wf~~del~~~L  335 (417)
                      ....+++.|.+....... ..+++|+.+++|++++++.+.+
T Consensus       102 ~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~l  142 (157)
T 4dyw_A          102 GEHWVAPVYLAHAFSGEPRVVEPDRHEALGWFALDDLPQPL  142 (157)
T ss_dssp             TEEEEEEEEEESEEESCCCCSCTTTEEEEEEEETTSCCSSB
T ss_pred             CcEEEEEEEEEEEcCCCcccCCCCcEeEEEEECHHHccccc
Confidence            123455666666544443 3345789999999999999844

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.72  E-value=6.1e-17  Score=141.95  Aligned_cols=109  Identities=26%  Similarity=0.318  Sum_probs=82.7

Q ss_pred             cEEEEEEEecCCCEEEEEEecC---CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCc
Q 014873          222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC  298 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~---~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~  298 (417)
                      .+|.+++++ .+++|||++|.+   ..+|.|.+|||++|+|||+++||+||++||||+.+....+++...+.+..   ..
T Consensus         9 ~~v~~vi~~-~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~---~~   84 (153)
T 3grn_A            9 ISVYALIRN-EKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELTE---KK   84 (153)
T ss_dssp             EEEEEEEEC-TTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSS---CE
T ss_pred             EEEEEEEEc-CCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEEecCC---ce
Confidence            344455554 368999999984   35799999999999999999999999999999998776666665544321   23


Q ss_pred             EEEEEEEEEEecccccCCcccccceEEEehhhHHHHh
Q 014873          299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKAL  335 (417)
Q Consensus       299 ~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L  335 (417)
                      ..++.|.+....+.+.. .+|..+++|++++++.++.
T Consensus        85 ~~~~~~~~~~~~~~~~~-~~e~~~~~W~~~~el~~~~  120 (153)
T 3grn_A           85 VIAIVFDGGYVVADVKL-SYEHIEYSWVSLEKILGME  120 (153)
T ss_dssp             EEEEEEEEEECCCCCCC-CTTEEEEEEECHHHHTTCS
T ss_pred             EEEEEEEEEecCCcEec-CCCcceEEEEEHHHhhhcc
Confidence            55666666655555544 3788999999999999853

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.71  E-value=2.8e-17  Score=145.99  Aligned_cols=121  Identities=21%  Similarity=0.255  Sum_probs=87.6

Q ss_pred             cCcEEEEEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCc
Q 014873          220 VDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC  298 (417)
Q Consensus       220 ~~pvVivlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~  298 (417)
                      +..++.+++++.++++|||+||.+ .+.|.|++|||+||+|||+++||+||++||||+.+..+.+++...+.+... ...
T Consensus         9 ~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~-~~~   87 (161)
T 3exq_A            9 VELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDR-QHR   87 (161)
T ss_dssp             EEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSC-SSE
T ss_pred             ceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEecccCCC-CeE
Confidence            345566666664336999999885 456789999999999999999999999999999998888877776654222 123


Q ss_pred             EEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHH
Q 014873          299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKA  343 (417)
Q Consensus       299 ~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a  343 (417)
                      ..++.|.+......  +...|..+++|++++++.++...+..++.
T Consensus        88 ~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~~~~~~~~~~~  130 (161)
T 3exq_A           88 KLGLLYRASNFTGT--LKASAEGQLSWLPITALTRENSAASLPEF  130 (161)
T ss_dssp             EEEEEEEECCEESC--CCGGGTTTEEEECGGGCCTTTBCTTHHHH
T ss_pred             EEEEEEEEeccCCc--cCCCccceEEEeeHHHhhhCccChHHHHH
Confidence            44555555444443  34578889999999999986444444443

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.71  E-value=2.8e-17  Score=148.54  Aligned_cols=119  Identities=24%  Similarity=0.216  Sum_probs=87.3

Q ss_pred             cCCcCcEEEEEEEecCCCEEEEEEecCC--CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCC
Q 014873          217 YPRVDPVVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPN  294 (417)
Q Consensus       217 ypr~~pvVivlvi~~~~~kVLL~rr~~~--~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~  294 (417)
                      |.+...+|.+++++. +++|||++|.+.  .+|.|++|||++|+|||+++||+||++||||+++..+.+++......+  
T Consensus        37 ~~~~~~~v~v~i~~~-~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~--  113 (182)
T 2yvp_A           37 RPGPVAASFVLPVTE-RGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPS--  113 (182)
T ss_dssp             BCSSCEEEEEEEBCT-TSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCTT--
T ss_pred             EEecCCEEEEEEEcC-CCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCCCC--
Confidence            333344555666654 689999998753  467999999999999999999999999999999988877765432211  


Q ss_pred             CCCcEEEEEEEEEEe--cccccCCcccccceEEEehhhHHHHhhhhh
Q 014873          295 SMPCQLMVGFYAYAK--SFEINVDKEELEDARWHSREDVKKALTFAE  339 (417)
Q Consensus       295 ~~p~~l~i~f~a~~~--~~~~~~~~~E~~~a~Wf~~del~~~L~~~~  339 (417)
                       .....+..|++...  ......+.+|+.+++|++++++.+++..+.
T Consensus       114 -~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~  159 (182)
T 2yvp_A          114 -FTAVVFHPFLALKARVVTPPTLEEGELLESLELPLTEVYALLAKGE  159 (182)
T ss_dssp             -TBCCEEEEEEECSCEECSCCCCCTTCCEEEEEEEHHHHHHHHHTTC
T ss_pred             -ccccEEEEEEEeccccCCCCCCCCCceEEEEEEEHHHHHHHHHcCC
Confidence             12345556666532  234445678999999999999999776543

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.71  E-value=8.4e-17  Score=148.33  Aligned_cols=103  Identities=21%  Similarity=0.204  Sum_probs=75.7

Q ss_pred             ecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEe
Q 014873          230 DRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAK  309 (417)
Q Consensus       230 ~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~  309 (417)
                      ...+++|||+||.+. +|.|.+|||+||+|||+++||+||++||||+++..+.+++...+..     ....+..|++.+.
T Consensus        50 ~~~~~~vLLv~r~~~-~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~~~~-----~~~~~~~f~~~~~  123 (194)
T 2fvv_A           50 SESEEEVLLVSSSRH-PDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQE-----RKHRTYVYVLIVT  123 (194)
T ss_dssp             STTCCEEEEEECSSC-TTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETT-----TTEEEEEEEEEEE
T ss_pred             ECCCCEEEEEEEeCC-CCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEEcCC-----CceEEEEEEEEEc
Confidence            344689999998753 5899999999999999999999999999999998888777766432     1234455555543


Q ss_pred             cccccC--CcccccceEEEehhhHHHHhhhh
Q 014873          310 SFEINV--DKEELEDARWHSREDVKKALTFA  338 (417)
Q Consensus       310 ~~~~~~--~~~E~~~a~Wf~~del~~~L~~~  338 (417)
                      ......  ..++..+++||+++++++++...
T Consensus       124 ~~~~~~~~~~e~~~~~~W~~~~el~~~l~~~  154 (194)
T 2fvv_A          124 EVLEDWEDSVNIGRKREWFKIEDAIKVLQYH  154 (194)
T ss_dssp             EECSSCHHHHHHCCCEEEEEHHHHHHHHTTT
T ss_pred             cccCCCCCcccccceEEEEEHHHHHHHHhcC
Confidence            211111  11244789999999999977644

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.70  E-value=1.2e-16  Score=147.45  Aligned_cols=116  Identities=20%  Similarity=0.189  Sum_probs=87.0

Q ss_pred             EEEEEEEecCCCEEEEEEecCCC--CCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEE
Q 014873          223 VVIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL  300 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~~~--~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l  300 (417)
                      +|++++++. + +|||+||.+..  ++.|++|||+||+|||+++||+||++||||+++..+.+++......+   .....
T Consensus        51 av~vl~~~~-~-~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~---~~~~~  125 (198)
T 1vhz_A           51 AVMIVPIVD-D-HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPS---YFSSK  125 (198)
T ss_dssp             EEEEEEEET-T-EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTT---TCCCE
T ss_pred             EEEEEEEEC-C-EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCC---ccCcE
Confidence            444555554 3 99999987633  46899999999999999999999999999999988888877653322   12334


Q ss_pred             EEEEEEEEec-ccccCCcccccceEEEehhhHHHHhhhhhHHHH
Q 014873          301 MVGFYAYAKS-FEINVDKEELEDARWHSREDVKKALTFAEYIKA  343 (417)
Q Consensus       301 ~i~f~a~~~~-~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a  343 (417)
                      +..|++.... .....+++|..+++|++++++.+++..+.+..+
T Consensus       126 ~~~f~a~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~i~~~  169 (198)
T 1vhz_A          126 MNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDPDFNEA  169 (198)
T ss_dssp             EEEEEEEEEEECCCCCCCSSCCCEEEEEGGGGGGGGGCTTTCBH
T ss_pred             EEEEEEEeCCcccCCCCCCceEEEEEEEHHHHHHHHHcCCCCCH
Confidence            5556666433 334456788999999999999998887765543

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.70  E-value=1.1e-16  Score=144.61  Aligned_cols=106  Identities=19%  Similarity=0.259  Sum_probs=79.1

Q ss_pred             CCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEec
Q 014873          232 ENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKS  310 (417)
Q Consensus       232 ~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~  310 (417)
                      .+++|||++|.+ ...|.|.+|||+||+|||+++||+||++||||+++..+.+++...+.+.... ....+..|.+....
T Consensus        34 ~~~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~-~~~~~~~f~~~~~~  112 (176)
T 3q93_A           34 QPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEP-ELMDVHVFCTDSIQ  112 (176)
T ss_dssp             CSSEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCS-CEEEEEEEEESCEE
T ss_pred             eCCEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCC-cEEEEEEEEEECCC
Confidence            478999998865 4578999999999999999999999999999999988888887765543221 23445556554433


Q ss_pred             ccccCCcccccceEEEehhhHHHHhhhhhH
Q 014873          311 FEINVDKEELEDARWHSREDVKKALTFAEY  340 (417)
Q Consensus       311 ~~~~~~~~E~~~a~Wf~~del~~~L~~~~~  340 (417)
                      +.+  ...|..+++|++++++++....+..
T Consensus       113 ~~~--~~~e~~~~~W~~~~el~~~~~~~~~  140 (176)
T 3q93_A          113 GTP--VESDEMRPCWFQLDQIPFKDMWPDD  140 (176)
T ss_dssp             SCC--CCCSSEEEEEEETTCCCGGGBCTTH
T ss_pred             CCc--CCCcceeeEEeeHHHccccccCcch
Confidence            333  3456778899999999975433333

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.70  E-value=1.2e-16  Score=140.26  Aligned_cols=112  Identities=18%  Similarity=0.273  Sum_probs=81.8

Q ss_pred             cEEEEEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCee--ccEEEEEEeecCCCC---CC
Q 014873          222 PVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV--GEVVYHTSQPWPVGP---NS  295 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v--~~v~~~~s~~~~~~~---~~  295 (417)
                      .+|.+++++ .+++|||+||.+ ..+|.|++|||++|+|||+++||+||++||||+.+  ..+.+++...+.+..   +.
T Consensus        19 ~~v~~vi~~-~~~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   97 (160)
T 1rya_A           19 VSLDFIVEN-SRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGT   97 (160)
T ss_dssp             EEEEEEEEC-TTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTTBS
T ss_pred             EEEEEEEEc-CCCEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEcccccCC
Confidence            345555555 368999999875 34789999999999999999999999999999995  355665554332211   11


Q ss_pred             --CCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHH
Q 014873          296 --MPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKA  334 (417)
Q Consensus       296 --~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~  334 (417)
                        ....+++.|.+......+..+.+|+.+++|++++++.+.
T Consensus        98 ~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~  138 (160)
T 1rya_A           98 DFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLAS  138 (160)
T ss_dssp             SSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHC
T ss_pred             CcCcEEEEEEEEEEcCccccccCCCccceEEEecHHHHhhc
Confidence              113456667676655555556789999999999999973

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.70  E-value=1.2e-16  Score=141.79  Aligned_cols=115  Identities=22%  Similarity=0.302  Sum_probs=74.0

Q ss_pred             EEEEEEecCCCEEEEEEecC---CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEe------ecCCCCC
Q 014873          224 VIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ------PWPVGPN  294 (417)
Q Consensus       224 Vivlvi~~~~~kVLL~rr~~---~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~------~~~~~~~  294 (417)
                      +++++++. +++|||+||..   ..+|.|++|||++|+|||+++||+||++||||+.+....++...      .+.+...
T Consensus        30 ~~~~ii~~-~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~  108 (165)
T 3oga_A           30 IVCPLIQN-DGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYADG  108 (165)
T ss_dssp             EEEEEEEE-TTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEEC--C
T ss_pred             EEEEEEeC-CCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEecCCC
Confidence            33444444 68999998874   34689999999999999999999999999999998655443211      1112111


Q ss_pred             CCC--cEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhH
Q 014873          295 SMP--CQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEY  340 (417)
Q Consensus       295 ~~p--~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~  340 (417)
                      ...  ..++..|.+......+.. .+|+.+++|++++++.++...+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~~~~~~~  155 (165)
T 3oga_A          109 RQEEIYMIYLIFDCVSANRDICI-NDEFQDYAWVKPEELALYDLNVAT  155 (165)
T ss_dssp             CEEEEEEEEEEEEEEESCCCCCC-CTTEEEEEEECGGGGGGSCBCHHH
T ss_pred             CceeEEEEEEEEEeeccCCCccC-CchheeeEEccHHHHhhCCCCHHH
Confidence            111  122334444444444443 378999999999999985333333

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.70  E-value=8e-17  Score=142.28  Aligned_cols=109  Identities=28%  Similarity=0.350  Sum_probs=80.2

Q ss_pred             EEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEE-------------eec
Q 014873          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS-------------QPW  289 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s-------------~~~  289 (417)
                      ++.++|++  +++|||+||.+  .|.|.+|||+||+|||+++||+||++||||+++..+.+++.             .+.
T Consensus         8 ~v~~vi~~--~~~vLL~~r~~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (159)
T 3f6a_A            8 TVSVFIVC--KDKVLLHLHKK--AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEKLLIN   83 (159)
T ss_dssp             EEEEEEEE--TTEEEEEECSS--SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCEEECC
T ss_pred             EEEEEEEE--CCEEEEEEcCC--CCeEECCccCccCCCCHHHHHHHHHHHHhCCCceecccccccccccccccccccccC
Confidence            44455555  58999999875  68999999999999999999999999999998865544421             111


Q ss_pred             CC-----CCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHh
Q 014873          290 PV-----GPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKAL  335 (417)
Q Consensus       290 ~~-----~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L  335 (417)
                      +.     ........+.+.|.+....+.+..+++|..+++|++++++.++.
T Consensus        84 p~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  134 (159)
T 3f6a_A           84 PIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKILKWYSKEDLKNAH  134 (159)
T ss_dssp             CSEEEEECSSSSSCEEEEEEEEECSCSCCCCCTTSCCCEEEECSSSSTTCS
T ss_pred             ccccccccCCCCceEEEEEEEEEeCCCCcCCCCCcccceEEeeHHHHhhCc
Confidence            10     00011235566777777666666677899999999999999854

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.69  E-value=1.6e-16  Score=147.99  Aligned_cols=125  Identities=26%  Similarity=0.255  Sum_probs=88.3

Q ss_pred             CcccCCcCcEEEEEEEecCCCEEEEEEecCCC-------CCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEE
Q 014873          214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSRFV-------PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS  286 (417)
Q Consensus       214 ~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~-------~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s  286 (417)
                      +..+.+.+ +|.+++++.++++|||+|+.+.+       ++.|++|||+||+|||+++||+||++||||+.+..+.+++.
T Consensus        51 r~~~~~~~-av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~  129 (209)
T 1g0s_A           51 REIFERGH-AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLS  129 (209)
T ss_dssp             EEEEECCC-EEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_pred             EEEEeCCC-EEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEE
Confidence            34455544 55556666557899999887643       46799999999999999999999999999999988888877


Q ss_pred             eecCCCCCCCCcEEEEEEEEEEecc---c--ccCCcccccceEEEehhhHHHHhhhhhHHH
Q 014873          287 QPWPVGPNSMPCQLMVGFYAYAKSF---E--INVDKEELEDARWHSREDVKKALTFAEYIK  342 (417)
Q Consensus       287 ~~~~~~~~~~p~~l~i~f~a~~~~~---~--~~~~~~E~~~a~Wf~~del~~~L~~~~~~~  342 (417)
                      .....+   .....+..|++.....   .  ...+++|..++.|++++++.+++..+.+.+
T Consensus       130 ~~~~~g---~~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~i~~g~i~d  187 (209)
T 1g0s_A          130 FLASPG---GTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDN  187 (209)
T ss_dssp             EESCTT---TBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTTSSCB
T ss_pred             EecCCC---ccCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHHHHcCCCCC
Confidence            522211   1224556677764321   1  134567888999999999999887665543

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.69  E-value=1.6e-16  Score=138.12  Aligned_cols=104  Identities=22%  Similarity=0.251  Sum_probs=77.3

Q ss_pred             EEEEecCCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEE
Q 014873          226 MLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG  303 (417)
Q Consensus       226 vlvi~~~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~  303 (417)
                      +++++. +++|||++|..  ..+|.|++|||++|+||++++||+||++||||+.+....+++...+.+..   ....+..
T Consensus        26 ~~i~~~-~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~---~~~~~~~  101 (153)
T 3ees_A           26 AGFLRK-DGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYGD---VGILILF  101 (153)
T ss_dssp             EEEEEE-TTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEETT---EEEEEEE
T ss_pred             EEEEEE-CCEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEEecCC---CeEEEEE
Confidence            344443 68999999875  45689999999999999999999999999999998776666655444321   1233444


Q ss_pred             EEEEEecccccCCcccccceEEEehhhHHHHh
Q 014873          304 FYAYAKSFEINVDKEELEDARWHSREDVKKAL  335 (417)
Q Consensus       304 f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L  335 (417)
                      |.+......  ++.+|..+++|++++++.++.
T Consensus       102 ~~~~~~~~~--~~~~e~~~~~W~~~~el~~~~  131 (153)
T 3ees_A          102 YEILYWKGE--PRAKHHMMLEWIHPEELKHRN  131 (153)
T ss_dssp             EEECEEESC--CCCSSSSEEEEECGGGGGGSC
T ss_pred             EEEEECCCC--cCCCccceEEEecHHHhhhCC
Confidence            555444333  456788999999999999853

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.68  E-value=3.1e-16  Score=143.80  Aligned_cols=123  Identities=24%  Similarity=0.260  Sum_probs=88.1

Q ss_pred             cccCCcCcEEEEEEEecCCCEEEEEEecCC--------CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEE
Q 014873          215 RIYPRVDPVVIMLVIDRENDRVLLSRQSRF--------VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS  286 (417)
Q Consensus       215 ~~ypr~~pvVivlvi~~~~~kVLL~rr~~~--------~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s  286 (417)
                      ..+++.+.| .+++++.++++|||+|+.+.        .++.|++|||++| |||+++||+||++||||+++..+.+++.
T Consensus        40 ~~~~~~~av-~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~  117 (191)
T 3o6z_A           40 EVYDRGNGA-TILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFE  117 (191)
T ss_dssp             EEEECCCEE-EEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEE
T ss_pred             EEEecCCEE-EEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEE
Confidence            344554444 45556655689999998863        5678999999999 9999999999999999999988888887


Q ss_pred             eecCCCCCCCCcEEEEEEEEEEeccc-----ccCCcccccceEEEehhhHHHHhhhhhHHHH
Q 014873          287 QPWPVGPNSMPCQLMVGFYAYAKSFE-----INVDKEELEDARWHSREDVKKALTFAEYIKA  343 (417)
Q Consensus       287 ~~~~~~~~~~p~~l~i~f~a~~~~~~-----~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a  343 (417)
                      .....+   .....+..|++......     ... ++|..+++|++++++.+++..+.+..+
T Consensus       118 ~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~~~~~g~i~d~  175 (191)
T 3o6z_A          118 LYMSPG---GVTELIHFFIAEYSDNQRANAGGGV-EDEAIEVLELPFSQALEMIKTGEIRDG  175 (191)
T ss_dssp             EESCTT---TBCCEEEEEEEECCTTCC---------CCSSEEEEEEHHHHHHHHHHSSCCBH
T ss_pred             EEeCCC---ccCcEEEEEEEEEcccccccCCCCC-CCcEEEEEEEEHHHHHHHHHcCCCCCH
Confidence            543322   22345566766654321     122 678999999999999998877665443

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.68  E-value=2.1e-16  Score=139.08  Aligned_cols=113  Identities=23%  Similarity=0.354  Sum_probs=77.3

Q ss_pred             CcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEE--eecCCCC-----
Q 014873          221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS--QPWPVGP-----  293 (417)
Q Consensus       221 ~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s--~~~~~~~-----  293 (417)
                      ..+|.+++++. +++|||+||.+ .+|.|++|||+||+|||+++||+||++||||+++..+.....  ..+.+..     
T Consensus        14 ~~~v~~~i~~~-~~~vLl~~r~~-~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   91 (165)
T 1f3y_A           14 RRNVGICLMNN-DKKIFAASRLD-IPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREK   91 (165)
T ss_dssp             CCEEEEEEECT-TSCEEEEEETT-EEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCCHHHHHH
T ss_pred             eeeEEEEEECC-CCcEEEEecCC-CCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeeecCcccccc
Confidence            34555666664 68999999975 348999999999999999999999999999998765433221  1111100     


Q ss_pred             ------CCCCcEEEEEEEEEEecc--cccC-----CcccccceEEEehhhHHHHh
Q 014873          294 ------NSMPCQLMVGFYAYAKSF--EINV-----DKEELEDARWHSREDVKKAL  335 (417)
Q Consensus       294 ------~~~p~~l~i~f~a~~~~~--~~~~-----~~~E~~~a~Wf~~del~~~L  335 (417)
                            .......+..|.+.+...  .+.+     +++|+.+++|++++++.+++
T Consensus        92 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  146 (165)
T 1f3y_A           92 LNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLT  146 (165)
T ss_dssp             HGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHB
T ss_pred             ccccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHh
Confidence                  000112445566655433  3333     35689999999999999965

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.68  E-value=5.7e-16  Score=139.34  Aligned_cols=108  Identities=21%  Similarity=0.301  Sum_probs=82.1

Q ss_pred             EEEEEEEecCCCEEEEEEecC---CCCCcEEe-eeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCc
Q 014873          223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC  298 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~---~~~g~Wsl-PgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~  298 (417)
                      ++.+++++. +++|||++|..   ..+|.|.+ |||++|+|||+++||+||++||||+.+..+.+++.+.+..+   ...
T Consensus        39 ~~~v~i~~~-~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~---~~~  114 (180)
T 2fkb_A           39 ATYIVVHDG-MGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDK---NCR  114 (180)
T ss_dssp             EEEEEEECS-SSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEET---TEE
T ss_pred             EEEEEEECC-CCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEecCC---Cce
Confidence            444555553 67999999874   34789999 99999999999999999999999999877777776654432   123


Q ss_pred             EEEEEEEEEEecccccCCcccccceEEEehhhHHHHh
Q 014873          299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKAL  335 (417)
Q Consensus       299 ~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L  335 (417)
                      ..+..|.+. ....+..+++|+.+++|++++++.+++
T Consensus       115 ~~~~~f~~~-~~~~~~~~~~E~~~~~W~~~~el~~~~  150 (180)
T 2fkb_A          115 VWGALFSCV-SHGPFALQEDEVSEVCWLTPEEITARC  150 (180)
T ss_dssp             EEEEEEEEE-CCCCCCCCTTTEEEEEEECHHHHHTTG
T ss_pred             EEEEEEEEe-cCCCcCCChhHhheEEEecHHHHHHHH
Confidence            445556555 344555667899999999999999965

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.68  E-value=2.6e-16  Score=135.77  Aligned_cols=113  Identities=22%  Similarity=0.250  Sum_probs=79.2

Q ss_pred             cEEEEEEEecCCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccE--EEEEEeecCCCCCCCC
Q 014873          222 PVVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV--VYHTSQPWPVGPNSMP  297 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v--~~~~s~~~~~~~~~~p  297 (417)
                      .++.+++++ .+++|||+||..  ..+|.|++|||++|+||++++||+||++||||+.+...  ..+....+.+.   ..
T Consensus         9 ~~~~~vi~~-~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~---~~   84 (144)
T 3r03_A            9 LVTAAALID-PDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYD---TF   84 (144)
T ss_dssp             EEEEEEEBC-TTSCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECS---SS
T ss_pred             EEEEEEEEc-CCCEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCC---Ce
Confidence            344445554 368999999874  45689999999999999999999999999999998654  44443333332   12


Q ss_pred             cEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhH
Q 014873          298 CQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEY  340 (417)
Q Consensus       298 ~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~  340 (417)
                      ...+..|.+.....  .....|..+++|++++++.++......
T Consensus        85 ~~~~~~~~~~~~~~--~~~~~e~~~~~W~~~~el~~~~~~~~~  125 (144)
T 3r03_A           85 HLLMPLYACRSWRG--RATAREGQTLAWVRAERLREYPMPPAD  125 (144)
T ss_dssp             EEEEEEEEECCCBS--CCCCCSSCEEEEECGGGGGGSCCCTTT
T ss_pred             EEEEEEEEEEecCC--ccCCCCcceEEEEeHHHhccCCCCcch
Confidence            34445555544433  334578899999999999985333333

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.68  E-value=5.2e-16  Score=133.08  Aligned_cols=108  Identities=22%  Similarity=0.250  Sum_probs=78.4

Q ss_pred             CCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEec
Q 014873          233 NDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKS  310 (417)
Q Consensus       233 ~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~  310 (417)
                      +++|||+||..  ..+|.|++|||++|+|||+++||+||++||||+.+..+.+++...+.+..   ....+..|.+....
T Consensus        19 ~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~   95 (140)
T 2rrk_A           19 DGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVSG---RIIHLHAWHVPDFH   95 (140)
T ss_dssp             TTEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEEEETT---EEEEEEEEEESEEE
T ss_pred             CCEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEEecCC---cEEEEEEEEEEeeC
Confidence            68999999864  34699999999999999999999999999999999877777665544321   12334455544433


Q ss_pred             ccccCCcccccceEEEehhhHHHHhhhhhHHHHHH
Q 014873          311 FEINVDKEELEDARWHSREDVKKALTFAEYIKAQR  345 (417)
Q Consensus       311 ~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~  345 (417)
                      ..  ....|+.+++|++++++.++.......+.+.
T Consensus        96 ~~--~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~  128 (140)
T 2rrk_A           96 GT--LQAHEHQALVWCSPEEALQYPLAPADIPLLE  128 (140)
T ss_dssp             EC--CCCSSCSCEEEECHHHHTTSCCCTTHHHHHH
T ss_pred             CC--cCCCccceeEEeCHHHHhhCCCChhHHHHHH
Confidence            32  3456888999999999998543334444433

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.68  E-value=2.8e-16  Score=138.44  Aligned_cols=116  Identities=22%  Similarity=0.247  Sum_probs=80.2

Q ss_pred             EEEEEEEecCCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccE--EEEEEeecCCCCCCCCc
Q 014873          223 VVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV--VYHTSQPWPVGPNSMPC  298 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v--~~~~s~~~~~~~~~~p~  298 (417)
                      ++.+++++ .+++|||+||..  ..+|.|.+|||++|+||++++||+||++||||+.+...  ..+....+.+..   ..
T Consensus        31 ~~~~~i~~-~~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~---~~  106 (158)
T 3hhj_A           31 VVACALLD-QDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGYET---FH  106 (158)
T ss_dssp             EEEEEEBC-TTSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSS---CE
T ss_pred             EEEEEEEe-CCCEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEEEeeccCC---cE
Confidence            44444554 468999999874  45789999999999999999999999999999998654  334443333321   12


Q ss_pred             EEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHH
Q 014873          299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQ  344 (417)
Q Consensus       299 ~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~  344 (417)
                      ..+..|.+.....  ..+..|..+++|++++++.++......++.+
T Consensus       107 ~~~~~~~~~~~~~--~~~~~e~~~~~W~~~~el~~~~~~~~~~~il  150 (158)
T 3hhj_A          107 LLMPLYFCSHYKG--VAQGREGQNLKWIFINDLDKYPMPEADKPLV  150 (158)
T ss_dssp             EEEEEEEESCCBS--CCCCTTSCEEEEEEGGGGGGSCCCTTTHHHH
T ss_pred             EEEEEEEEEECCC--ccCCccccceEEEcHHHHhhCCCCcchHHHH
Confidence            3444444443333  3445788999999999998854444444433

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.67  E-value=4.2e-16  Score=139.11  Aligned_cols=109  Identities=19%  Similarity=0.320  Sum_probs=83.0

Q ss_pred             CcEEEEEEEecCCCEEEEEEecC---CCCCcEE-eeeeeccCCCCHHHHHHHHHHHHhCCeecc--EEEEEEee-cCCCC
Q 014873          221 DPVVIMLVIDRENDRVLLSRQSR---FVPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEVGE--VVYHTSQP-WPVGP  293 (417)
Q Consensus       221 ~pvVivlvi~~~~~kVLL~rr~~---~~~g~Ws-lPgG~VE~GEtleeAa~REv~EEtGl~v~~--v~~~~s~~-~~~~~  293 (417)
                      ..++.+++++. +++|||+||..   ..+|.|+ +|||+||+|||+++||+||++||||+.+..  +.+++... +....
T Consensus        34 ~~~v~v~i~~~-~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~  112 (171)
T 1q27_A           34 VRVVNAFLRNS-QGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTL  112 (171)
T ss_dssp             CEEEEEEEEET-TTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCC
T ss_pred             ceEEEEEEECC-CCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCC
Confidence            44555566654 67999999864   2378998 999999999999999999999999999865  56776665 44322


Q ss_pred             CCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHh
Q 014873          294 NSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKAL  335 (417)
Q Consensus       294 ~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L  335 (417)
                          ...+..|.+.. ..++.++++|+.+++|++++++.+++
T Consensus       113 ----~~~~~~f~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~  149 (171)
T 1q27_A          113 ----SSFMCVYELRS-DATPIFNPNDISGGEWLTPEHLLARI  149 (171)
T ss_dssp             ----SSEEEEEEEEC-CCCCCSCTTTCSCCEEECHHHHHHHH
T ss_pred             ----ccEEEEEEEEE-CCccccCchhhheEEEecHHHHHHHH
Confidence                12556666665 45566667899999999999999753

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.67  E-value=1.6e-16  Score=144.86  Aligned_cols=115  Identities=19%  Similarity=0.307  Sum_probs=82.9

Q ss_pred             EEEEEEEecCCCEEEEEEecC---CCCCcEEe-eeeeccCCCCHHHHHHHHHHHHhCCeeccE-EEEEEeecC--CCCCC
Q 014873          223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEVGEV-VYHTSQPWP--VGPNS  295 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~---~~~g~Wsl-PgG~VE~GEtleeAa~REv~EEtGl~v~~v-~~~~s~~~~--~~~~~  295 (417)
                      +|.+++++. +++|||++|..   ..+|.|++ |||+||+|||+++||+||++||||+.+..+ .+++.+.+.  +....
T Consensus        34 ~v~~~i~~~-~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  112 (190)
T 1hzt_A           34 AFSSWLFNA-KGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGI  112 (190)
T ss_dssp             CEEEEEECT-TCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSC
T ss_pred             EEEEEEEcC-CCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCCCC
Confidence            444555553 68999999864   24799999 999999999999999999999999999877 555444331  11111


Q ss_pred             CCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhh
Q 014873          296 MPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAE  339 (417)
Q Consensus       296 ~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~  339 (417)
                      ....++..|.+... +++..+++|+.+++|++++++.+++..+.
T Consensus       113 ~~~~~~~~f~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~~~~  155 (190)
T 1hzt_A          113 VENEVCPVFAARTT-SALQINDDEVMDYQWCDLADVLHGIDATP  155 (190)
T ss_dssp             EEEEECCEEEEEBC-SCCCCCTTTEEEEEEECHHHHHHHHHHCG
T ss_pred             cceEEEEEEEEecC-CCCcCCccceeeEEEecHHHHHHHHHcCh
Confidence            11334555656543 45556678999999999999999766443

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.67  E-value=2.2e-16  Score=148.44  Aligned_cols=114  Identities=22%  Similarity=0.233  Sum_probs=82.7

Q ss_pred             cEEEEEEEecCCCEEEEEEecCCC---------------------------------CCcEEeeeeeccC-CCCHHHHHH
Q 014873          222 PVVIMLVIDRENDRVLLSRQSRFV---------------------------------PRMWSCIAGFIEP-GESLEEAVR  267 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~~~---------------------------------~g~WslPgG~VE~-GEtleeAa~  267 (417)
                      .+|.+++++..+++|||+||.|++                                 ++.|++|||+||+ |||+++||+
T Consensus        37 ~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~eaA~  116 (218)
T 3q91_A           37 DSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEVAC  116 (218)
T ss_dssp             CEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHHHHHH
T ss_pred             CeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHHHHHH
Confidence            455566777556899999987632                                 5699999999999 999999999


Q ss_pred             HHHHHHhCCee--ccEEEEEEeecCCCCCCCCcEEEEEEEEEEec------ccccCCcccccceEEEehhhHHHHhhhh
Q 014873          268 RETWEETGIEV--GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKS------FEINVDKEELEDARWHSREDVKKALTFA  338 (417)
Q Consensus       268 REv~EEtGl~v--~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~------~~~~~~~~E~~~a~Wf~~del~~~L~~~  338 (417)
                      ||++||||+.+  ..+.+++......+   .....+..|++....      .....+++|..+++|++++++.+++..+
T Consensus       117 REl~EEtGl~~~~~~l~~l~~~~~~~g---~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev~wv~l~el~~~i~~g  192 (218)
T 3q91_A          117 KEAWEECGYHLAPSDLRRVATYWSGVG---LTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAFADDP  192 (218)
T ss_dssp             HHHHHHHCBCCCGGGCEEEEEEEEC------CCEEEEEEEEEECGGGBCC---------CCEEEEEEEGGGHHHHHHCT
T ss_pred             HHHHHHhCCccccCceEEEEEEecCCC---ccceEEEEEEEEECCcccccCCCCCCCCCcEEEEEEEEHHHHHHHHHcC
Confidence            99999999998  78888877543222   234566677776542      1244567899999999999999987643

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.66  E-value=1.9e-16  Score=139.70  Aligned_cols=120  Identities=23%  Similarity=0.325  Sum_probs=81.6

Q ss_pred             EEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeec--------CC----
Q 014873          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW--------PV----  291 (417)
Q Consensus       224 Vivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~--------~~----  291 (417)
                      +.++|++  +++|||++|.+  .|.|.+|||++|+|||+++||+||++||||+++..+..++....        ++    
T Consensus         4 ~~~vi~~--~~~vLL~~r~~--~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (156)
T 1k2e_A            4 TSGVLVE--NGKVLLVKHKR--LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVILE   79 (156)
T ss_dssp             EEEECEE--TTEEEEEECTT--TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSEEEE
T ss_pred             EEEEEEE--CCEEEEEEEcC--CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccceeeecccccccccccceeee
Confidence            4444555  68999999875  68999999999999999999999999999999864433211100        00    


Q ss_pred             ----CCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHHh
Q 014873          292 ----GPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQM  354 (417)
Q Consensus       292 ----~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~~  354 (417)
                          .+......+.+.|.+...       ..|..+++|+++++++++..++..+..+..+..++...
T Consensus        80 ~~~~~~~~~~~~~~~~f~~~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~  139 (156)
T 1k2e_A           80 EVVKYPEETHIHFDLIYLVKRV-------GGDLKNGEWIDVREIDRIETFPNVRKVVSLALSTLYRL  139 (156)
T ss_dssp             EEEECSSCEEEEEEEEEEEEEE-------EECCCSCEEEEGGGGGGSCBSTTHHHHHHHHHHHHHHH
T ss_pred             eeecCCCCceEEEEEEEEEEec-------CCcEeeeEEeCHHHHhcCCCChHHHHHHHHHHHHHHhh
Confidence                011001123334444322       35688999999999998666666777777776666554

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.66  E-value=6.3e-16  Score=135.41  Aligned_cols=119  Identities=18%  Similarity=0.284  Sum_probs=81.1

Q ss_pred             CCcCcEEEEEEEecCCCE--EEEEEecCC-CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCC
Q 014873          218 PRVDPVVIMLVIDRENDR--VLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPN  294 (417)
Q Consensus       218 pr~~pvVivlvi~~~~~k--VLL~rr~~~-~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~  294 (417)
                      +.+..++.++|.+.++++  |||++|... .+| |.+|||++|+|||+++||+||++||||+.+....+++...+.....
T Consensus         5 ~~~~~~~~~ii~~~~~~~~~vLl~~r~~~~~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   83 (155)
T 2b06_A            5 QLTILTNICLIEDLETQRVVMQYRAPENNRWSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDTG   83 (155)
T ss_dssp             GCEEEEEEEEEEETTTTEEEEEEEC-----CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTS
T ss_pred             cCcEEEEEEEEEECCCCeEEEEEEECCCCCCCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeeccCCC
Confidence            344556666666632222  889888752 355 9999999999999999999999999999998777777665554211


Q ss_pred             CCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHH
Q 014873          295 SMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYI  341 (417)
Q Consensus       295 ~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~  341 (417)
                        ....++.|.+......+  ...|..+++|++++++.++......+
T Consensus        84 --~~~~~~~~~~~~~~~~~--~~~e~~~~~W~~~~el~~~~~~~~~~  126 (155)
T 2b06_A           84 --GRYIVICYKATEFSGTL--QSSEEGEVSWVQKDQIPNLNLAYDML  126 (155)
T ss_dssp             --CEEEEEEEEECEEEECC--CCBTTBEEEEEEGGGGGGSCBCTTHH
T ss_pred             --ceEEEEEEEEEecCCCC--CCCcceeeEEeeHHHhhhCCCChhHH
Confidence              23455666665443332  34688999999999999854433333

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.66  E-value=3.1e-16  Score=143.43  Aligned_cols=108  Identities=28%  Similarity=0.405  Sum_probs=78.1

Q ss_pred             EEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC--CcEE
Q 014873          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM--PCQL  300 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~--p~~l  300 (417)
                      ++++++.+  +++|||+||..  .|.|.+|||+||+|||+++||+||++||||+.+....+++...+.+.....  ....
T Consensus         6 v~~~vi~~--~~~vLL~~r~~--~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (188)
T 3fk9_A            6 VTNCIVVD--HDQVLLLQKPR--RGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWM   81 (188)
T ss_dssp             EEEEEEEE--TTEEEEEECTT--TCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEE--CCEEEEEEeCC--CCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEEEE
Confidence            44445544  58999999863  789999999999999999999999999999999877776666554321111  1125


Q ss_pred             EEEEEEEEecccccCCcccccceEEEehhhHHHHh
Q 014873          301 MVGFYAYAKSFEINVDKEELEDARWHSREDVKKAL  335 (417)
Q Consensus       301 ~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L  335 (417)
                      ++.|.+....+.... ..|..+++|+++++++++.
T Consensus        82 ~~~f~a~~~~~~~~~-~~e~~~~~W~~~~el~~~~  115 (188)
T 3fk9_A           82 LFTFKATEHEGEMLK-QSPEGKLEWKKKDEVLELP  115 (188)
T ss_dssp             EEEEEESCEESCCCS-EETTEEEEEEEGGGGGGSC
T ss_pred             EEEEEEECCCCCCcC-CCCCEeEEEEEHHHhhhCC
Confidence            566666544444332 3455789999999999753

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.66  E-value=9.3e-16  Score=142.24  Aligned_cols=116  Identities=17%  Similarity=0.215  Sum_probs=80.4

Q ss_pred             cEEEEEEEecCCCEEEEEEecCC--CCCcEEeeeeecc-CCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCc
Q 014873          222 PVVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIE-PGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC  298 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~~--~~g~WslPgG~VE-~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~  298 (417)
                      .+|.+++++ .+++|||+||.+.  ..+.|.+|||+|| +|||+++||+||++||||+++..+.+++.. +... . ...
T Consensus        44 ~av~v~i~~-~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~-~~~~-~-~~~  119 (207)
T 1mk1_A           44 GAVAIVAMD-DNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDL-DTAP-G-FSD  119 (207)
T ss_dssp             CEEEEEECC-TTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEE-CSCT-T-TBC
T ss_pred             CEEEEEEEc-CCCEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEE-EcCC-C-ccc
Confidence            355555555 4789999998764  3579999999999 999999999999999999999888877765 3321 1 122


Q ss_pred             EEEEEEEEEEeccccc---CCcccccceEEEehhhHHHHhhhhhHH
Q 014873          299 QLMVGFYAYAKSFEIN---VDKEELEDARWHSREDVKKALTFAEYI  341 (417)
Q Consensus       299 ~l~i~f~a~~~~~~~~---~~~~E~~~a~Wf~~del~~~L~~~~~~  341 (417)
                      ..+..|++........   .+++|+.+++|++++++.+++..+.+.
T Consensus       120 ~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~i~  165 (207)
T 1mk1_A          120 ESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRGEIV  165 (207)
T ss_dssp             CCEEEEEEEEEEECCC----------CEEEEEHHHHHHHHHTTSCC
T ss_pred             cEEEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHHHHcCCcC
Confidence            2445566654332221   456789999999999999988776644

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.65  E-value=4.4e-15  Score=132.67  Aligned_cols=111  Identities=28%  Similarity=0.324  Sum_probs=80.8

Q ss_pred             CcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeec----CCCCC--
Q 014873          221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW----PVGPN--  294 (417)
Q Consensus       221 ~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~----~~~~~--  294 (417)
                      .++|.+++++. +++|||++|.+  .|.|.+|||++|+|||+++||+||++||||+.+..+.+++....    .+...  
T Consensus         8 ~~~v~~~i~~~-~~~vLl~~r~~--~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~   84 (164)
T 2kdv_A            8 RPNVGIVICNR-QGQVMWARRFG--QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLV   84 (164)
T ss_dssp             EEEEEEEEECT-TSEEEEEEETT--CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCTTTC
T ss_pred             CcEEEEEEEcc-CCEEEEEEEcC--CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEecCccee
Confidence            45566666654 68999999875  68999999999999999999999999999999988888777531    11110  


Q ss_pred             ------CCCcEEEEEEEEEEecc--cccCC---cccccceEEEehhhHHHH
Q 014873          295 ------SMPCQLMVGFYAYAKSF--EINVD---KEELEDARWHSREDVKKA  334 (417)
Q Consensus       295 ------~~p~~l~i~f~a~~~~~--~~~~~---~~E~~~a~Wf~~del~~~  334 (417)
                            .........|.+.....  .+.++   ..|+.+++|++++++.+.
T Consensus        85 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~~  135 (164)
T 2kdv_A           85 RWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQ  135 (164)
T ss_dssp             CTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGGG
T ss_pred             eeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhhh
Confidence                  11123456666665433  34443   358999999999998764

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.65  E-value=1.1e-15  Score=137.00  Aligned_cols=101  Identities=22%  Similarity=0.233  Sum_probs=73.6

Q ss_pred             EEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEE
Q 014873          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV  302 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i  302 (417)
                      +++++++.. +++|||++|.   .|.|++|||+||+|||+++||+||++||||+++..+.+++.+.++       ...+.
T Consensus        17 ~~~~~ii~~-~~~vLL~~r~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~-------~~~~~   85 (163)
T 3f13_A           17 RRATAIIEM-PDGVLVTASR---GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITP-------FNAHK   85 (163)
T ss_dssp             EEEEEECEE-TTEEEEEECC------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECS-------SEEEE
T ss_pred             EEEEEEEEe-CCEEEEEEEC---CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEecC-------CeEEE
Confidence            334444443 6899999986   589999999999999999999999999999999888888776554       25666


Q ss_pred             EEEEEEecccccCCcccccceEEEehhhHHHHhh
Q 014873          303 GFYAYAKSFEINVDKEELEDARWHSREDVKKALT  336 (417)
Q Consensus       303 ~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~  336 (417)
                      .|++.. .+++..+ +|+.+++||+.+.....+.
T Consensus        86 ~f~~~~-~~~~~~~-~E~~~~~W~~~~~~~~~l~  117 (163)
T 3f13_A           86 VYLCIA-QGQPKPQ-NEIERIALVSSPDTDMDLF  117 (163)
T ss_dssp             EEEEEC--CCCCCC-TTCCEEEEESSTTCSSCBC
T ss_pred             EEEEEE-CCcCccC-CCceEEEEECcccccCCCC
Confidence            677754 3444444 4899999999554443344

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.65  E-value=3.9e-16  Score=142.57  Aligned_cols=112  Identities=16%  Similarity=0.123  Sum_probs=82.9

Q ss_pred             CcEEEEEEEecCCC--EEEEEEecC---CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC
Q 014873          221 DPVVIMLVIDREND--RVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS  295 (417)
Q Consensus       221 ~pvVivlvi~~~~~--kVLL~rr~~---~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~  295 (417)
                      ..++++++++. ++  +|||+||..   ..+|.|++|||++|+|||+++||+||++||||+++..+.+++...+.+..  
T Consensus        34 ~~~~~~v~i~~-~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~--  110 (194)
T 1nqz_A           34 RRAAVLVALTR-EADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTP--  110 (194)
T ss_dssp             EEEEEEEEEES-SSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEET--
T ss_pred             ceEEEEEEEec-CCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEEccCccCC--
Confidence            34444445554 45  899999874   46789999999999999999999999999999999888888776544332  


Q ss_pred             CCcEEEEEEEEEEec-cc-ccCCcccccceEEEehhhH-HHHhh
Q 014873          296 MPCQLMVGFYAYAKS-FE-INVDKEELEDARWHSREDV-KKALT  336 (417)
Q Consensus       296 ~p~~l~i~f~a~~~~-~~-~~~~~~E~~~a~Wf~~del-~~~L~  336 (417)
                       ....+..|.+.... .+ ...+++|+.+++|++++++ .+.+.
T Consensus       111 -~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~  153 (194)
T 1nqz_A          111 -VGFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVPLV  153 (194)
T ss_dssp             -TTEEEEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHSCCE
T ss_pred             -CCeEEEEEEEEecCCccccCCCccceeEEEEEEHHHhccCCCc
Confidence             23455566666552 23 4566789999999999999 77544

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.64  E-value=1.3e-15  Score=141.73  Aligned_cols=114  Identities=21%  Similarity=0.171  Sum_probs=80.6

Q ss_pred             cCcEEEEEEEecC--CCEEEEEEecCCC--CCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC
Q 014873          220 VDPVVIMLVIDRE--NDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS  295 (417)
Q Consensus       220 ~~pvVivlvi~~~--~~kVLL~rr~~~~--~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~  295 (417)
                      .+.|+++.++..+  +++|||++|.+.+  ++.|++|||+||+||++++||+||++||||+.+..+.+++......+   
T Consensus        61 ~~av~v~~v~~~~~~~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~---  137 (212)
T 2dsc_A           61 ADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPG---  137 (212)
T ss_dssp             CSEEEEEEEEECTTSCCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTT---
T ss_pred             CCEEEEEEEEeCCCCCcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCCC---
Confidence            4555555555432  3589999986643  45899999999999999999999999999999876665543321111   


Q ss_pred             CCcEEEEEEEEEEecc-------cccCCcccccceEEEehhhHHHHhh
Q 014873          296 MPCQLMVGFYAYAKSF-------EINVDKEELEDARWHSREDVKKALT  336 (417)
Q Consensus       296 ~p~~l~i~f~a~~~~~-------~~~~~~~E~~~a~Wf~~del~~~L~  336 (417)
                      +....+..|++.+...       ....+++|..+++|++++++.+++.
T Consensus       138 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~  185 (212)
T 2dsc_A          138 LSNCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQRLD  185 (212)
T ss_dssp             TBCCEEEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHHHHH
T ss_pred             ccCceEEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHHHHH
Confidence            2223455566654321       3345678999999999999999765

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.64  E-value=5.3e-16  Score=135.93  Aligned_cols=106  Identities=17%  Similarity=0.230  Sum_probs=74.7

Q ss_pred             EEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC-cEEE
Q 014873          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP-CQLM  301 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p-~~l~  301 (417)
                      .+.++|++  +++|||+||    .|.|.+|||++|+|||+++||+||++||||+.+....+++...+.+...... ..+.
T Consensus        21 ~~~~ii~~--~~~vLl~~r----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (154)
T 2pqv_A           21 RATALIVQ--NHKLLVTKD----KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYHNIE   94 (154)
T ss_dssp             EEEECCEE--TTEEEEEEE----TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEE--CCEEEEEec----CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCCcceEEE
Confidence            34444444  689999998    5899999999999999999999999999999987666555443322111111 2244


Q ss_pred             EEEEEEEeccccc--CCcccccceEEEehhhHHHH
Q 014873          302 VGFYAYAKSFEIN--VDKEELEDARWHSREDVKKA  334 (417)
Q Consensus       302 i~f~a~~~~~~~~--~~~~E~~~a~Wf~~del~~~  334 (417)
                      +.|.+........  .+++|..+++|++++++.++
T Consensus        95 ~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~  129 (154)
T 2pqv_A           95 FHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNI  129 (154)
T ss_dssp             EEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGGS
T ss_pred             EEEEEEecCCCCcccCCCCceeeEEEeEHHHHhhc
Confidence            4555655433221  23467889999999999984

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.63  E-value=2.8e-15  Score=150.62  Aligned_cols=121  Identities=21%  Similarity=0.262  Sum_probs=89.8

Q ss_pred             cCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC----------CcEE
Q 014873          231 RENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM----------PCQL  300 (417)
Q Consensus       231 ~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~----------p~~l  300 (417)
                      .++.+|||++|.+  .|.|++|||+||+|||+++||+||++||||+++....+++...+.+.....          ....
T Consensus        35 ~~~~~vLLv~r~~--~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~  112 (364)
T 3fjy_A           35 LDSIEVCIVHRPK--YDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKH  112 (364)
T ss_dssp             HTTEEEEEEEETT--TTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC---------------------C
T ss_pred             CCceEEEEEEcCC--CCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccCceE
Confidence            4466999999864  589999999999999999999999999999999877777766655432110          1244


Q ss_pred             EEEEEEEEeccc------------ccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHH
Q 014873          301 MVGFYAYAKSFE------------INVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQ  353 (417)
Q Consensus       301 ~i~f~a~~~~~~------------~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~  353 (417)
                      +..|.+......            ...+++|+.+++||+++++.+++.++..+.++..+..+++.
T Consensus       113 ~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~r~il~~~~~~l~~  177 (364)
T 3fjy_A          113 TLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHSTDKDTLAVFVDRVQE  177 (364)
T ss_dssp             EEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhcchhhHHHHHHHHHHhcc
Confidence            455555554432            13456899999999999999999999888888888777754

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.62  E-value=4e-16  Score=135.34  Aligned_cols=109  Identities=18%  Similarity=0.287  Sum_probs=73.6

Q ss_pred             cEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEe-ecCCCCCCCCcEE
Q 014873          222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ-PWPVGPNSMPCQL  300 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~-~~~~~~~~~p~~l  300 (417)
                      +++.++|++.++++|||+||..  .|.|.+|||++|+|||+++||+||++||||+.+..+..+... ....     ....
T Consensus         5 ~~~~~~i~~~~~~~vLl~~r~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~-----~~~~   77 (146)
T 2jvb_A            5 PVRGAAIFNENLSKILLVQGTE--SDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNI-----QGKN   77 (146)
T ss_dssp             CCEEEEEBCTTSSEEEEECCSS--SSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCSSCEEEEEE-----TTEE
T ss_pred             EEEEEEEEeCCCCEEEEEEEcC--CCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhccccccccccc-----CCce
Confidence            4455566665448999999764  689999999999999999999999999999988643211110 0000     1122


Q ss_pred             EEEEEEEEec--ccccC-CcccccceEEEehhhHHHHhhh
Q 014873          301 MVGFYAYAKS--FEINV-DKEELEDARWHSREDVKKALTF  337 (417)
Q Consensus       301 ~i~f~a~~~~--~~~~~-~~~E~~~a~Wf~~del~~~L~~  337 (417)
                      +..|++....  ..... +.+|+.+++|++++++.+++..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~  117 (146)
T 2jvb_A           78 YKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYK  117 (146)
T ss_dssp             EEEEEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGC
T ss_pred             EEEEEEEeccccccCCcCCcchhheeEEeEHHHHHhhhcc
Confidence            3334333221  12222 3678999999999999986654

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.60  E-value=2.6e-16  Score=132.94  Aligned_cols=101  Identities=20%  Similarity=0.201  Sum_probs=74.3

Q ss_pred             EEecCCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEE
Q 014873          228 VIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFY  305 (417)
Q Consensus       228 vi~~~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~  305 (417)
                      +++. +++|||+||.+  ..+|.|++|||++|+|||+++||+||++||||+.+..+.+++...+.+..   ....+..|.
T Consensus        11 i~~~-~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~   86 (129)
T 1mut_A           11 IRNE-NNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPD---RHITLWFWL   86 (129)
T ss_dssp             CEET-TTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCCCSS---CEEECCCEE
T ss_pred             EEec-CCEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEEEecCC---ceEEEEEEE
Confidence            3443 68999999875  35699999999999999999999999999999998766555554443321   122334455


Q ss_pred             EEEecccccCCcccccceEEEehhhHHHH
Q 014873          306 AYAKSFEINVDKEELEDARWHSREDVKKA  334 (417)
Q Consensus       306 a~~~~~~~~~~~~E~~~a~Wf~~del~~~  334 (417)
                      +......  +..+|..+++|++++++.++
T Consensus        87 ~~~~~~~--~~~~e~~~~~W~~~~el~~~  113 (129)
T 1mut_A           87 VERWEGE--PWGKEGQPGEWMSLVGLNAD  113 (129)
T ss_dssp             EEECSSC--CCCCSSCCCEEEESSSCCTT
T ss_pred             EEccCCc--cCCcccceeEEeCHHHcccc
Confidence            5544332  34568889999999999874

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.60  E-value=3.5e-15  Score=139.59  Aligned_cols=99  Identities=22%  Similarity=0.325  Sum_probs=73.1

Q ss_pred             CCEEEEEEecCC-----CCCcEEe-eeeeccCCCC------HHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEE
Q 014873          233 NDRVLLSRQSRF-----VPRMWSC-IAGFIEPGES------LEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL  300 (417)
Q Consensus       233 ~~kVLL~rr~~~-----~~g~Wsl-PgG~VE~GEt------leeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l  300 (417)
                      +++|||++|...     ..|.|++ |||+||+|||      +++||+||++||||+++..+.+++...|...+.. ...+
T Consensus        78 ~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~~~~~~-~~~l  156 (211)
T 3e57_A           78 GDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSSTTEVS-RVHL  156 (211)
T ss_dssp             TTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCSSHHH-HTEE
T ss_pred             CCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEeccCCCCC-eEEE
Confidence            689999999753     2378998 9999999998      5999999999999999998899988877432111 1245


Q ss_pred             EEEEEEEEecccccCCcccccceEEEehhhHHHH
Q 014873          301 MVGFYAYAKSFEINVDKEELEDARWHSREDVKKA  334 (417)
Q Consensus       301 ~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~  334 (417)
                      ++.|.+.....  .+.+.|..+++|+++++|+++
T Consensus       157 ~~~f~~~~~~g--~~~~~E~~~~~W~~~~eL~~~  188 (211)
T 3e57_A          157 GALFLGRGKFF--SVKEKDLFEWELIKLEELEKF  188 (211)
T ss_dssp             EEEEEEEEEEE--EESCTTTCEEEEEEHHHHHHH
T ss_pred             EEEEEEEeCCc--eeCCCCeEEEEEEEHHHHHHh
Confidence            55677665533  345577889999999999986

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.56  E-value=1.8e-15  Score=146.61  Aligned_cols=113  Identities=19%  Similarity=0.264  Sum_probs=75.1

Q ss_pred             cCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC
Q 014873          217 YPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM  296 (417)
Q Consensus       217 ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~  296 (417)
                      |...-+++.+++++..+++|||+||.+ .+|.|.+|||+||+|||+++||+||++||||+++..+..+..+..+.    .
T Consensus        97 ~~~~v~~v~avv~~~~~~~vLLv~r~~-~~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l~~~~~~~~~~----~  171 (271)
T 2a6t_A           97 YKTRIPVRGAIMLDMSMQQCVLVKGWK-ASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMT----I  171 (271)
T ss_dssp             HSCCCCEEEEEEBCSSSSEEEEEEESS-TTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEE----E
T ss_pred             cCCCCCeEEEEEEECCCCEEEEEEEeC-CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCceeeeeeeeeccCC----c
Confidence            443445666667665458999999976 35899999999999999999999999999999987533211111000    1


Q ss_pred             CcEEEEEEEEEEecc--cccC-CcccccceEEEehhhHHHH
Q 014873          297 PCQLMVGFYAYAKSF--EINV-DKEELEDARWHSREDVKKA  334 (417)
Q Consensus       297 p~~l~i~f~a~~~~~--~~~~-~~~E~~~a~Wf~~del~~~  334 (417)
                      ....+..|++.....  .... +++|+.+++|++++++.++
T Consensus       172 ~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  212 (271)
T 2a6t_A          172 RGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTF  212 (271)
T ss_dssp             TTEEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTC
T ss_pred             CCceEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHH
Confidence            123445555544322  2222 4679999999999999874

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.55  E-value=3.2e-14  Score=124.96  Aligned_cols=106  Identities=14%  Similarity=0.157  Sum_probs=75.0

Q ss_pred             EEEEEEecC--CCEEEEEEecC--CCCCcEEeeeeeccCCCCHH-HHHHHHHHHHhC-CeeccEEEEEEeecCCCCCCCC
Q 014873          224 VIMLVIDRE--NDRVLLSRQSR--FVPRMWSCIAGFIEPGESLE-EAVRRETWEETG-IEVGEVVYHTSQPWPVGPNSMP  297 (417)
Q Consensus       224 Vivlvi~~~--~~kVLL~rr~~--~~~g~WslPgG~VE~GEtle-eAa~REv~EEtG-l~v~~v~~~~s~~~~~~~~~~p  297 (417)
                      ++++|.+..  +++|||+||..  ...|+|++|||.+|+||+++ +|++||++|||| +.+..+.+++...+.+..   .
T Consensus        22 ~~~vi~~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~~~~~~---~   98 (155)
T 1x51_A           22 ATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSH---I   98 (155)
T ss_dssp             EEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSS---C
T ss_pred             EEEEEEecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceEEEecCC---c
Confidence            334444432  47999999874  45689999999999999997 999999999999 887766665554443321   1


Q ss_pred             cEEEEEEEEEEecccccCCcccccceEEEehhhHHHH
Q 014873          298 CQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKA  334 (417)
Q Consensus       298 ~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~  334 (417)
                      ...+..|.+....+..  ...|..+++|++++++.++
T Consensus        99 ~~~~~~~~~~~~~~~~--~~~e~~~~~W~~~~el~~~  133 (155)
T 1x51_A           99 KLTYQVYGLALEGQTP--VTTVPPGARWLTQEEFHTA  133 (155)
T ss_dssp             EEEEEEEEEECSSCCC--CCCCCTTEEEEEHHHHHHS
T ss_pred             cEEEEEEEEEEcCCCC--CCCCCCccEEccHHHhhhc
Confidence            2334455555443332  3357788999999999973

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.50  E-value=1e-13  Score=131.62  Aligned_cols=113  Identities=17%  Similarity=0.292  Sum_probs=81.4

Q ss_pred             cEEEEEEEecCCCEEEEEEecC---CCCCcEEee-eeeccCC------CC---HHHHHHHHHHHHhCCeec-----cEEE
Q 014873          222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPG------ES---LEEAVRRETWEETGIEVG-----EVVY  283 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~---~~~g~WslP-gG~VE~G------Et---leeAa~REv~EEtGl~v~-----~v~~  283 (417)
                      .++.+++++. +++|||+||..   .++|+|++| ||++++|      |+   +++||+||++|||||.+.     .+.+
T Consensus        60 ~av~v~v~~~-~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~~  138 (235)
T 2dho_A           60 RAFSVFLFNT-ENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINY  138 (235)
T ss_dssp             EEEEEEEECT-TCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSEE
T ss_pred             EEEEEEEEcC-CCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhcEE
Confidence            3555566654 67999999974   467999998 5999999      88   599999999999999865     3566


Q ss_pred             EEEeecCCCCCCC--CcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhh
Q 014873          284 HTSQPWPVGPNSM--PCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALT  336 (417)
Q Consensus       284 ~~s~~~~~~~~~~--p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~  336 (417)
                      ++...+.......  ...+...|++.. ..++.++++|+.+++|++++++.+++.
T Consensus       139 l~~~~y~~~~~~~~~~~e~~~vf~~~~-~~~~~~~~~Ev~~~~wv~~~el~~~l~  192 (235)
T 2dho_A          139 LTRIHYKAQSDGIWGEHEIDYILLVRM-NVTLNPDPNEIKSYCYVSKEELKELLK  192 (235)
T ss_dssp             EEEEEEEEECSSSBEEEEEEEEEEEEC-CCCCCCCTTTEEEEEEECHHHHHHHHH
T ss_pred             EEEEEEeccCCCccceeEEEEEEEEEE-CCCCcCChHHEEEEEEEcHHHHHHHHh
Confidence            6665443211110  122444555554 345667789999999999999998765

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.48  E-value=1.2e-13  Score=132.19  Aligned_cols=113  Identities=15%  Similarity=0.224  Sum_probs=81.5

Q ss_pred             cEEEEEEEecCCCEEEEEEecC---CCCCcEEeee-eeccCC------CCH---HHHHHHHHHHHhCCeec-----cEEE
Q 014873          222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCIA-GFIEPG------ESL---EEAVRRETWEETGIEVG-----EVVY  283 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~---~~~g~WslPg-G~VE~G------Etl---eeAa~REv~EEtGl~v~-----~v~~  283 (417)
                      .++.+++++. +++|||+||..   .++|+|++|+ |++++|      |++   ++||+||++|||||.+.     .+.+
T Consensus        71 ~av~v~v~~~-~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l~~  149 (246)
T 2pny_A           71 RAFSVVLFNT-KNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVF  149 (246)
T ss_dssp             EEEEEEEECT-TCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGSEE
T ss_pred             EEEEEEEEeC-CCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccccEE
Confidence            3555566664 67999999973   4689999985 999999      886   99999999999999864     3566


Q ss_pred             EEEeecCCCCCCC--CcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhh
Q 014873          284 HTSQPWPVGPNSM--PCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALT  336 (417)
Q Consensus       284 ~~s~~~~~~~~~~--p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~  336 (417)
                      ++...+.......  ...+...|++.. ..++.++++|+.+++|++++++.+++.
T Consensus       150 l~~~~y~~~~~~~~~~~e~~~vf~~~~-~~~~~~~~~Ev~~~~wv~~eel~~~l~  203 (246)
T 2pny_A          150 MTIYHHKAKSDRIWGEHEICYLLLVRK-NVTLNPDPSETKSILYLSQEELWELLE  203 (246)
T ss_dssp             EEEEEEEEESSSSBEEEEEEEEEEEEC-CCCCCCCTTTEEEEEEECHHHHHHHHH
T ss_pred             EEEEEEEecCCCceeeeEEEEEEEEEE-CCCCCCChHHeeEEEEEeHHHHHHHHH
Confidence            6665443211110  122444555554 345667789999999999999998765

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.47  E-value=2.9e-14  Score=132.93  Aligned_cols=111  Identities=18%  Similarity=0.117  Sum_probs=78.7

Q ss_pred             CcccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCC-CHHHHHHHHHHHHhCCeeccEE-----EEEEe
Q 014873          214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGIEVGEVV-----YHTSQ  287 (417)
Q Consensus       214 ~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GE-tleeAa~REv~EEtGl~v~~v~-----~~~s~  287 (417)
                      ...|.. ..++++++++. +++|||++|.   .|.|++|||+||+|| |+++||+||++||||+.+..+.     ++++.
T Consensus        38 ~~l~~~-~~~vv~~i~~~-~~~vLl~~r~---~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~  112 (212)
T 1u20_A           38 ALLHAP-SQAKLFDRVPI-RRVLLMMMRF---DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQ  112 (212)
T ss_dssp             EEEEEE-CCCEETTTEEC-CEEEEEEEET---TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEE
T ss_pred             EEEeCC-CceEEEEEEec-CCEEEEEEeC---CCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEec
Confidence            344432 34455555553 6799999883   689999999999999 9999999999999999987542     56665


Q ss_pred             ecCCCCCCCCcEEEEEEEEEEeccccc----------CCcccccceEEEehhhHHH
Q 014873          288 PWPVGPNSMPCQLMVGFYAYAKSFEIN----------VDKEELEDARWHSREDVKK  333 (417)
Q Consensus       288 ~~~~~~~~~p~~l~i~f~a~~~~~~~~----------~~~~E~~~a~Wf~~del~~  333 (417)
                      .+.+.    ....+..|.+....+++.          .++.|..++.|++++++.+
T Consensus       113 ~~~~~----~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~  164 (212)
T 1u20_A          113 VREHP----QKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRD  164 (212)
T ss_dssp             EECTT----SCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTT
T ss_pred             cccCC----CcEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHhhh
Confidence            55432    235566666665433221          2346788899999999865

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.42  E-value=8.1e-14  Score=130.81  Aligned_cols=111  Identities=18%  Similarity=0.189  Sum_probs=76.1

Q ss_pred             CCCcccCCcCcEEE-EEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCC-CHHHHHHHHHHHHhCCeecc-----EEEE
Q 014873          212 CKKRIYPRVDPVVI-MLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGIEVGE-----VVYH  284 (417)
Q Consensus       212 C~~~~ypr~~pvVi-vlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GE-tleeAa~REv~EEtGl~v~~-----v~~~  284 (417)
                      |+...|+ .++.++ +++..  ++++||..|.   +|.|++|||+||+|| |+++||+||++||||+++..     +.++
T Consensus        45 ~~~~~~~-~~~~~v~~vi~~--~~~~ll~~r~---~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~  118 (217)
T 2xsq_A           45 CHALLYA-PDPGMLFGRIPL--RYAILMQMRF---DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYR  118 (217)
T ss_dssp             EEEEEEE-EEEEEETTTEEE--EEEEEEEEET---TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEE
T ss_pred             eeeEEEc-CCCcEEEEEEEe--eCcEEEEEcc---CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEE
Confidence            4567776 455444 22322  2356666554   589999999999999 99999999999999998862     2344


Q ss_pred             EEeecCCCCCCCCcEEEEEEEEEEecccc----------cCCcccccceEEEehhhHHH
Q 014873          285 TSQPWPVGPNSMPCQLMVGFYAYAKSFEI----------NVDKEELEDARWHSREDVKK  333 (417)
Q Consensus       285 ~s~~~~~~~~~~p~~l~i~f~a~~~~~~~----------~~~~~E~~~a~Wf~~del~~  333 (417)
                      .+.+..     .+..+++.|.+.....+.          ..+..|..++.|++++++.+
T Consensus       119 ~~~~~~-----~~~~~~~~f~~~l~~~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~d  172 (217)
T 2xsq_A          119 SSHVGS-----GPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLRD  172 (217)
T ss_dssp             EEEECS-----SSSEEEEEEEEECCHHHHHHHHHHGGGSTTBTTTEEEEEECCCSBCTT
T ss_pred             eecCCC-----CCeEEEEEEEEEeccccceecccccccccccCCceeeEEEEEHHHhhh
Confidence            444432     235667777776554333          22356888999999998863

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.36  E-value=4.1e-12  Score=124.29  Aligned_cols=103  Identities=15%  Similarity=0.153  Sum_probs=69.1

Q ss_pred             EEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeec-----------cEE--------EEEEeecCCCCCC
Q 014873          235 RVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG-----------EVV--------YHTSQPWPVGPNS  295 (417)
Q Consensus       235 kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~-----------~v~--------~~~s~~~~~~~~~  295 (417)
                      +|||++|..  .|.|.+|||+||+|||+++||+||++||||+.+.           .+.        ++.........+.
T Consensus       140 ~vLl~~r~~--~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dpr~~  217 (292)
T 1q33_A          140 QFVAIKRKD--CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNT  217 (292)
T ss_dssp             EEEEEECTT--TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCC
T ss_pred             EEEEEEecC--CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCCCCC
Confidence            799999875  4899999999999999999999999999998730           111        1111111111010


Q ss_pred             -CCcEEEEEEEEEEeccc-----ccCCcccccceEEEehhhHHHHhhhhhH
Q 014873          296 -MPCQLMVGFYAYAKSFE-----INVDKEELEDARWHSREDVKKALTFAEY  340 (417)
Q Consensus       296 -~p~~l~i~f~a~~~~~~-----~~~~~~E~~~a~Wf~~del~~~L~~~~~  340 (417)
                       ....+++.|++....++     .....+|+.+++||+++++++ |.++|.
T Consensus       218 d~~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~~-L~~~h~  267 (292)
T 1q33_A          218 DNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLK-LYASHS  267 (292)
T ss_dssp             SSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCC-CSTTHH
T ss_pred             cccEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCcc-cCHhHH
Confidence             11345666666553332     123457899999999999987 555554

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.35  E-value=1.7e-12  Score=130.89  Aligned_cols=99  Identities=14%  Similarity=0.131  Sum_probs=72.2

Q ss_pred             EEEecCCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEE
Q 014873          227 LVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGF  304 (417)
Q Consensus       227 lvi~~~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f  304 (417)
                      +|+.+.+++|||+||..  ..+|+|+||||++|+| |+++|+.||++||||+.+....+++...+.+..   ....+..|
T Consensus       245 ~vi~~~~g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h---~~~~~~~~  320 (369)
T 3fsp_A          245 AVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSH---LVWQLTVF  320 (369)
T ss_dssp             EEEECSSSEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSS---EEEEEEEE
T ss_pred             EEEEeCCCEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcce---EEEEEEEE
Confidence            33443478999999974  4679999999999999 999999999999999998655544444333321   12344455


Q ss_pred             EEEEecccccCCcccccceEEEehhhHHHH
Q 014873          305 YAYAKSFEINVDKEELEDARWHSREDVKKA  334 (417)
Q Consensus       305 ~a~~~~~~~~~~~~E~~~a~Wf~~del~~~  334 (417)
                      .+....+     ..|..+++||+++++.+.
T Consensus       321 ~~~~~~~-----~~e~~~~~Wv~~~el~~~  345 (369)
T 3fsp_A          321 PGRLVHG-----GPVEEPYRLAPEDELKAY  345 (369)
T ss_dssp             EEEECCS-----SCCCTTEEEEEGGGGGGS
T ss_pred             EEEEcCC-----CCCccccEEeeHHHhhhC
Confidence            5544332     468889999999999873

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.31  E-value=2.2e-11  Score=119.46  Aligned_cols=120  Identities=14%  Similarity=0.111  Sum_probs=81.8

Q ss_pred             cEEEEEEEecCC--CEEEEEEecC---CCCCcEE-eeeeeccCCCCHHHHHHHHHHHHhCCeec---cEEEEEEeecCCC
Q 014873          222 PVVIMLVIDREN--DRVLLSRQSR---FVPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEVG---EVVYHTSQPWPVG  292 (417)
Q Consensus       222 pvVivlvi~~~~--~kVLL~rr~~---~~~g~Ws-lPgG~VE~GEtleeAa~REv~EEtGl~v~---~v~~~~s~~~~~~  292 (417)
                      .+|-+.+++.++  .++||+||+.   .++|+|+ ++||++++|||+++||+||++||+||.+.   .+...+...|.+.
T Consensus       119 ~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~~~  198 (300)
T 3dup_A          119 YGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCME  198 (300)
T ss_dssp             EEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEEEE
T ss_pred             EEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEEEe
Confidence            355566665432  2999999983   5789995 99999999999999999999999999863   2333333322211


Q ss_pred             -CCCCCcEEEEEEEEEEec-ccccCCcccccceEEEehhhHHHHhhh-hhHH
Q 014873          293 -PNSMPCQLMVGFYAYAKS-FEINVDKEELEDARWHSREDVKKALTF-AEYI  341 (417)
Q Consensus       293 -~~~~p~~l~i~f~a~~~~-~~~~~~~~E~~~a~Wf~~del~~~L~~-~~~~  341 (417)
                       +..+...++..|.+.+.. ..+.++++|+++++|++++|+.+++.. +.++
T Consensus       199 ~~~G~~~E~~~vy~~~l~~~~~p~~~~~EV~~~~~v~~~El~~~l~~pg~F~  250 (300)
T 3dup_A          199 SPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEAVRTTEAFK  250 (300)
T ss_dssp             ETTEEEEEEEEEEEEECCTTCCCCCTTSSEEEEEEEEHHHHHHHHHHCCCBC
T ss_pred             cCCCeEEEEEEEEEEEecCCCcCCCCchHhheEEEECHHHHHHHHhcCCCcC
Confidence             111122334444444432 233567899999999999999998876 4443

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.27  E-value=1.5e-11  Score=116.48  Aligned_cols=100  Identities=22%  Similarity=0.372  Sum_probs=69.6

Q ss_pred             CEEEEEEecC---CCCCcEEeeeeeccCCCC--------------------HHHHHHHHHHHHhCCeeccE---------
Q 014873          234 DRVLLSRQSR---FVPRMWSCIAGFIEPGES--------------------LEEAVRRETWEETGIEVGEV---------  281 (417)
Q Consensus       234 ~kVLL~rr~~---~~~g~WslPgG~VE~GEt--------------------leeAa~REv~EEtGl~v~~v---------  281 (417)
                      .+|||+||..   +.+|.|.+|||+||+||+                    +.+||+||++|||||.+..-         
T Consensus        24 ~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~l~~~~~~~~~~~~  103 (232)
T 3qsj_A           24 IEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWLLAVRDGEGTKMDT  103 (232)
T ss_dssp             EEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCCCSEECTTCCBCCS
T ss_pred             eEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCceeccccccCcccCh
Confidence            3999999985   347999999999999997                    59999999999999975311         


Q ss_pred             ---------------------------------EEEEEeecCCCCCCCCcEEEEEEE-EEEeccc-ccCCcccccceEEE
Q 014873          282 ---------------------------------VYHTSQPWPVGPNSMPCQLMVGFY-AYAKSFE-INVDKEELEDARWH  326 (417)
Q Consensus       282 ---------------------------------~~~~s~~~~~~~~~~p~~l~i~f~-a~~~~~~-~~~~~~E~~~a~Wf  326 (417)
                                                       .++.  .|. .+...+..+...|| +...... +..+.+|+.+++|+
T Consensus       104 ~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~a--rWi-TP~~~~rRfdT~FFla~lpq~~~v~~d~~E~~~~~W~  180 (232)
T 3qsj_A          104 PLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIG--RFV-TPPTQPVRFDTRFFLCVGQHLGEPRLHGAELDAALWT  180 (232)
T ss_dssp             CCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEE--EEE-CCTTSSSEEEEEEEEEECSSCCCCCCCSSSEEEEEEE
T ss_pred             hhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeE--EEc-CCcCCceeEEEEEEEEECCCCCCCCCCCCceEEEEEE
Confidence                                             1111  121 22233454444444 4444222 25577999999999


Q ss_pred             ehhhHHHHhh
Q 014873          327 SREDVKKALT  336 (417)
Q Consensus       327 ~~del~~~L~  336 (417)
                      +++++.+...
T Consensus       181 ~p~eal~~~~  190 (232)
T 3qsj_A          181 PARDMLTRIQ  190 (232)
T ss_dssp             EHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            9999987543

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.01  E-value=1.1e-09  Score=108.47  Aligned_cols=100  Identities=13%  Similarity=0.080  Sum_probs=68.4

Q ss_pred             EEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHh-CCeeccEEEEEEeecCCCCCCCCcEEEEE
Q 014873          225 IMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEET-GIEVGEVVYHTSQPWPVGPNSMPCQLMVG  303 (417)
Q Consensus       225 ivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEt-Gl~v~~v~~~~s~~~~~~~~~~p~~l~i~  303 (417)
                      +.+++.. +++|||+  .  ..| |+||||.++.++  .++++||++||| |+++.....++.+..+.     .....+.
T Consensus       186 vgaii~~-~g~vLL~--~--~~G-W~LPG~~~~~~~--~~~a~RE~~EEttGl~v~~~~L~~v~~~~~-----~~~~~i~  252 (321)
T 3rh7_A          186 LGAVLEQ-QGAVFLA--G--NET-LSLPNCTVEGGD--PARTLAAYLEQLTGLNVTIGFLYSVYEDKS-----DGRQNIV  252 (321)
T ss_dssp             EEEEEES-SSCEEEB--C--SSE-EBCCEEEESSSC--HHHHHHHHHHHHHSSCEEEEEEEEEEECTT-----TCCEEEE
T ss_pred             EEEEEEE-CCEEEEe--e--CCC-ccCCcccCCCCh--hHHHHHHHHHHhcCCEEeeceEEEEEEcCC-----CceEEEE
Confidence            3444443 6899999  2  357 999988665444  459999999997 99998666666654432     1234567


Q ss_pred             EEEEEecccccCCcccccceEEEehhhHHHH-hhhhhHHHHH
Q 014873          304 FYAYAKSFEINVDKEELEDARWHSREDVKKA-LTFAEYIKAQ  344 (417)
Q Consensus       304 f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~-L~~~~~~~a~  344 (417)
                      |.+....++       ..+++||++++|+.. +.+...+..+
T Consensus       253 f~~~~~~g~-------~~e~~~f~~~elp~~~~~~~~~~~~L  287 (321)
T 3rh7_A          253 YHALASDGA-------PRQGRFLRPAELAAAKFSSSATADII  287 (321)
T ss_dssp             EEEEECSSC-------CSSSEEECHHHHTTCEESSHHHHHHH
T ss_pred             EEEEeCCCC-------eeeeEEECHHHCCCcccCCHHHHHHH
Confidence            777765433       378999999999973 4555554443

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=98.83  E-value=1e-09  Score=100.27  Aligned_cols=71  Identities=17%  Similarity=0.060  Sum_probs=50.7

Q ss_pred             CEEEEEEecCCCCCcEEeeeeeccCCC-CHHHHHHHHHHHHhCC-eeccEEEEEEeecCCCCCCCCcEEEEEEEEEEecc
Q 014873          234 DRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGI-EVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSF  311 (417)
Q Consensus       234 ~kVLL~rr~~~~~g~WslPgG~VE~GE-tleeAa~REv~EEtGl-~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~~  311 (417)
                      ..||++.|.   .|.|.+|||+||+|| |+++|++||+.||+|+ .+....|+.+..+.+.    ....+..|.+....+
T Consensus        44 ~~iLmQ~R~---~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~~yp----~~V~LHfY~crl~~G  116 (214)
T 3kvh_A           44 FSVLMQMRF---DGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGP----HRVVAHLYARQLTLE  116 (214)
T ss_dssp             EEEEEEEET---TSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC--------CEEEEEEEEECCHH
T ss_pred             heEEEeeee---CCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEeccCC----CEEEEEEEEEEeeCC
Confidence            457777765   599999999999999 9999999999999997 5776677777766532    134555565655433

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=98.54  E-value=1.6e-07  Score=86.70  Aligned_cols=40  Identities=28%  Similarity=0.346  Sum_probs=36.8

Q ss_pred             CEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCC
Q 014873          234 DRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI  276 (417)
Q Consensus       234 ~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl  276 (417)
                      .+|||+|+.   .+.|.||||.+|+||+.++|++||+.||+|+
T Consensus        73 phVLLlq~~---~~~f~LPGGkle~gE~~~eaL~REL~EELg~  112 (208)
T 3bho_A           73 PHVLLLQLG---TTFFKLPGGELNPGEDEVEGLKRLMTEILGR  112 (208)
T ss_dssp             EEEEEEEEE---TTEEECSEEECCTTCCHHHHHHHHHHHHHCC
T ss_pred             cEEEEEEcC---CCcEECCCcccCCCCCHHHHHHHHHHHHhCC
Confidence            489999975   4699999999999999999999999999995

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=97.05  E-value=0.00024  Score=50.96  Aligned_cols=33  Identities=21%  Similarity=0.590  Sum_probs=28.6

Q ss_pred             hccCccccCCCcceeccCccceeecCCCCCCcccC
Q 014873          184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP  218 (417)
Q Consensus       184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp  218 (417)
                      +.++|||.||+.+.......+..|+  .||+++|.
T Consensus        17 ~~~k~CP~CG~~~fm~~~~~R~~C~--kCG~t~~~   49 (50)
T 3j20_Y           17 RKNKFCPRCGPGVFMADHGDRWACG--KCGYTEWK   49 (50)
T ss_dssp             CSSEECSSSCSSCEEEECSSEEECS--SSCCEEEC
T ss_pred             EecccCCCCCCceEEecCCCeEECC--CCCCEEEC
Confidence            4579999999998887778899997  69999985

>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8

Probab=93.81  E-value=0.027  Score=40.97  Aligned_cols=33  Identities=24%  Similarity=0.573  Sum_probs=26.2

Q ss_pred             hccCccccCCCcceeccCccceeecCCCCCCcccC
Q 014873          184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP  218 (417)
Q Consensus       184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp  218 (417)
                      +..+|||.||.-+.......+..|.  .|+.+.|-
T Consensus        16 ~~~~fCPkCG~~~~ma~~~dr~~C~--kCgyt~~~   48 (55)
T 2k4x_A           16 RKHRFCPRCGPGVFLAEHADRYSCG--RCGYTEFK   48 (55)
T ss_dssp             CSSCCCTTTTTTCCCEECSSEEECT--TTCCCEEC
T ss_pred             EccccCcCCCCceeEeccCCEEECC--CCCCEEEe
Confidence            3479999999988766666799997  69988764

>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=87.80  E-value=0.31  Score=40.42  Aligned_cols=32  Identities=19%  Similarity=0.427  Sum_probs=25.7

Q ss_pred             ccCccccCCCcceeccC----ccceeecCCCCCCcccC
Q 014873          185 VSRFCGHCGEKTIPKEA----GKLKQCSNASCKKRIYP  218 (417)
Q Consensus       185 ~~~fC~~CG~~~~~~~~----g~~~~C~~~~C~~~~yp  218 (417)
                      ..+|||.||..|.+..+    ..+..|.  .|+.+++.
T Consensus         3 ~m~FCp~Cgn~L~~~~~~~~~~~~~~C~--~C~y~~~~   38 (113)
T 3h0g_I            3 NFQYCIECNNMLYPREDKVDRVLRLACR--NCDYSEIA   38 (113)
T ss_dssp             CCCCCSSSCCCCEECCCTTTCCCCEECS--SSCCEECC
T ss_pred             cceeCcCCCCEeeEcccCCCCeeEEECC--CCCCeEEc
Confidence            46899999999988654    3488997  69998864

>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}

Probab=84.41  E-value=0.42  Score=44.66  Aligned_cols=38  Identities=26%  Similarity=0.581  Sum_probs=25.7

Q ss_pred             HHHH-HhhhhccCccccCCCc-ceeccCc---cceeecCCCCCCc
Q 014873          176 ARAL-LEWHNVSRFCGHCGEK-TIPKEAG---KLKQCSNASCKKR  215 (417)
Q Consensus       176 A~~l-~~W~~~~~fC~~CG~~-~~~~~~g---~~~~C~~~~C~~~  215 (417)
                      ||=| -.|-.++.|||.||.. +......   -...|+  .|+..
T Consensus        23 aRVLTE~Wv~~n~yCPnCG~~~l~~f~nN~PVaDF~C~--~C~Ee   65 (257)
T 4esj_A           23 ARILTEDWVYRQSYCPNCGNNPLNHFENNRPVADFYCN--HCSEE   65 (257)
T ss_dssp             HHHHHHHHHHHHCCCTTTCCSSCEEC----CCCEEECT--TTCCE
T ss_pred             ehhhhHHHHHHCCcCCCCCChhhhhccCCCcccccccC--Ccchh
Confidence            5555 3699999999999995 5554443   457787  58754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	417
d1vk6a2	131	d.113.1.4 (A:126-256) NADH pyrophosphatase {Escher	2e-26
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	7e-20
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	1e-18
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	2e-18
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	1e-17
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	1e-17
d2b06a1	155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	3e-17
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	7e-17
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	1e-16
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	3e-15
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	4e-15
d1v8ya_	158	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus	9e-15
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	2e-14
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	4e-14
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	1e-13
d1vhza_	186	d.113.1.1 (A:) ADP compounds hydrolase NudE {Esche	4e-13
d2fb1a2	147	d.113.1.6 (A:3-149) Hypothetical protein BT0354, N	5e-13
d1ktga_	137	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	2e-12
d2o5fa1	162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	2e-12
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	7e-12
d1g0sa_	209	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escheri	8e-12
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	4e-11
d1puna_	129	d.113.1.1 (A:) Nucleoside triphosphate pyrophospho	5e-10
d1jkna_	165	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	7e-07
d1nqza_	187	d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco	3e-06
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	9e-06
d1x51a1	142	d.113.1.3 (A:8-149) A/G-specific adenine DNA glyco	0.002

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (251), Expect = 2e-26
 Identities = 43/115 (37%), Positives = 69/115 (60%), Gaps = 7/115 (6%)

Query: 219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           ++ P +I+ +    +D +LL++ +R    + + +AGF+E GE+LE+AV RE  EE+GI+V
Sbjct: 1   QIAPCIIVAIRR--DDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKV 58

Query: 279 GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKK 333
             + Y TSQPWP      P  LM  F A   S +I +D +EL +A W+  +D+  
Sbjct: 59  KNLRYVTSQPWP-----FPQSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPL 108

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.6 bits (206), Expect = 7e-20
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 222 PVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280
             +  LV+  +  RVLL  + R F    W+   G ++ GE++E+  RRE  EE+G+ V  
Sbjct: 4   SRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDA 63

Query: 281 VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKK 333
           +       +         +LM        S +    + +     W   + +  
Sbjct: 64  LHKVGQIVFEFVGEP---ELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPF 113

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 80.2 bits (197), Expect = 1e-18
 Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 5/131 (3%)

Query: 214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSRF-----VPRMWSCIAGFIEPGESLEEAVRR 268
           +R +  V+     +V+  E   +LL ++           +W   +G +E GE+ ++A  R
Sbjct: 4   ERTHVPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVR 63

Query: 269 ETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSR 328
           E  EETG+ V  V +  +         +  + +                +E+ +A + SR
Sbjct: 64  EACEETGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSR 123

Query: 329 EDVKKALTFAE 339
           ED  +     +
Sbjct: 124 EDFAQLYAAGQ 134

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 79.9 bits (196), Expect = 2e-18
 Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 9/138 (6%)

Query: 215 RIYPRVDPVV-IMLVIDRENDRVLLSRQS-RFVPRMWSCIAGFIEPGESLEEAVRRETWE 272
               R  P+V +  +++      LL +++ R     W    G ++  E+LE A  R T  
Sbjct: 10  ATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMA 69

Query: 273 ETGIEVGE-------VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARW 325
           E G+ +         V  H       G +     +++GF       E+ +  E+ +D RW
Sbjct: 70  ELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRW 129

Query: 326 HSREDVKKALTFAEYIKA 343
            + + +  +       +A
Sbjct: 130 LTSDALLASDNVHANSRA 147

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.7 bits (188), Expect = 1e-17
 Identities = 27/134 (20%), Positives = 38/134 (28%), Gaps = 15/134 (11%)

Query: 217 YPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI 276
           Y +    +         + VLL   SR  P  W    G +EP E    A  RE  EE G+
Sbjct: 10  YKKRAACLC--FRSESEEEVLLVSSSRH-PDRWIVPGGGMEPEEEPSVAAVREVCEEAGV 66

Query: 277 EV--GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKA 334
           +   G +V                  +          +            W   ED  K 
Sbjct: 67  KGTLGRLVGIFENQER-----KHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKV 121

Query: 335 LTF-----AEYIKA 343
           L +     A Y + 
Sbjct: 122 LQYHKPVQASYFET 135

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 77.1 bits (189), Expect = 1e-17
 Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           R+ PV   +++D    + +L +  +     W    G I+  ES  +   RE +EETG + 
Sbjct: 1   RI-PVRGAIMLDMSMQQCVLVKGWKA-SSGWGFPKGKIDKDESDVDCAIREVYEETGFDC 58

Query: 279 GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEI---NVDKEELEDARWHSREDVKK 333
              +            ++  Q +  +     S +    +  ++E+    WH+  D+  
Sbjct: 59  SSRINPNEFIDM----TIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPT 112

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 76.0 bits (186), Expect = 3e-17
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 223 VVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280
             I L+ D E  RV++  ++    R   ++   G +E  E+  E+V RE +EETG+ +  
Sbjct: 10  TNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQN 69

Query: 281 VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAE 339
                 + WP+          +     A  F   +   E  +  W  ++ +   L  A 
Sbjct: 70  PQLVGIKNWPLDTGGR----YIVICYKATEFSGTLQSSEEGEVSWVQKDQIPN-LNLAY 123

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 76.4 bits (187), Expect = 7e-17
 Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 9/160 (5%)

Query: 187 RFCGHCGEKTIPKEAGKLKQCSNASCKKRI--YPR----VDPVVIMLVIDRENDRVLLSR 240
           +F     EK   +    L +      ++ +  Y +    VD V++    + +  +VLL +
Sbjct: 1   QFASKAEEKNYYERQASLAEFLTWYHQQELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQ 60

Query: 241 QSRFVPR-MWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP-VGPNSMPC 298
           +     R  W+   GF+   ES E++V RET EETG+ + +        +     +    
Sbjct: 61  RKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGW 120

Query: 299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFA 338
            + V + A+    E  +  ++ ++  W + E   + +T +
Sbjct: 121 VVTVSYLAFIGE-EPLIAGDDAKEVHWFNLERHGQHITLS 159

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 74.4 bits (182), Expect = 1e-16
 Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 1/113 (0%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRFVPR-MWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280
           P V +  +  ++D+ LL  +         +  AG +EPGES+ +A  RE  EETG     
Sbjct: 2   PNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLP 61

Query: 281 VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKK 333
            V      W    N                         +  A W S ++++ 
Sbjct: 62  EVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRA 114

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 70.2 bits (171), Expect = 3e-15
 Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 5/122 (4%)

Query: 219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           +      ++V   EN+ ++L +        +    G IE  E+ EEA+ RE  EE GI V
Sbjct: 15  QTRYAAYIIVSKPENNTMVLVQAPN---GAYFLPGGEIEGTETKEEAIHREVLEELGISV 71

Query: 279 --GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALT 336
             G  +    + +              FY      +++   E      W + E+  + L 
Sbjct: 72  EIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLLK 131

Query: 337 FA 338
             
Sbjct: 132 RG 133

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 69.3 bits (169), Expect = 4e-15
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 287
           V+      VLL R        W    G  EPGESLEEA  RE WEETG+    ++     
Sbjct: 8   VVFNAKREVLLLRDRM---GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPT 64

Query: 288 PWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTA 347
            +    N    +  V ++         ++ E +  A W S E+ +  L F E +     A
Sbjct: 65  RY---VNPKGVEREVHWFLMRGEGAPRLE-EGMTGAGWFSPEEARALLAFPEDLGLLEVA 120

Query: 348 AAK 350
             +
Sbjct: 121 LER 123

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

 Score = 69.4 bits (169), Expect = 9e-15
 Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 7/124 (5%)

Query: 214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRETW 271
           +       P V ++ +     R+L  RQ R           AG IEPGE   EA RRE  
Sbjct: 17  RYEIVEHKPAVAVIALR--EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELA 74

Query: 272 EETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDV 331
           E+TG+        +       P     +  V      K  E + D++E  +  W   E+ 
Sbjct: 75  EQTGLSGDLTYLFSYFVS---PGFTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEA 131

Query: 332 KKAL 335
            +  
Sbjct: 132 LERH 135

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 2e-14
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 3/125 (2%)

Query: 225 IMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYH 284
           ++  +D      LL  Q+      W+   G +EPGE   E   R T EE GIE G++   
Sbjct: 20  LIPKVDNNAIEFLL-LQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTII 78

Query: 285 TSQPWPVGPNSMP-CQLMVGFYAYAKSFEINV-DKEELEDARWHSREDVKKALTFAEYIK 342
                 +   +    + ++ + A  K +++ +    E +  RW   E+  +   F E   
Sbjct: 79  EGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKA 138

Query: 343 AQRTA 347
           A +  
Sbjct: 139 ALQEG 143

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 67.6 bits (164), Expect = 4e-14
 Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 13/152 (8%)

Query: 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVV 282
           V   ++++  N +VLL +  R    ++    G +E  E+  EAV+RE  EETGI V  + 
Sbjct: 3   VTSGVLVE--NGKVLLVKHKR--LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIG 58

Query: 283 Y-HTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVD--------KEELEDARWHSREDVKK 333
           + +           MP  ++     Y +   I+ D          +L++  W    ++ +
Sbjct: 59  FTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREIDR 118

Query: 334 ALTFAEYIKAQRTAAAKVEQMCKGVERGQSLA 365
             TF    K    A + + ++ K  +   +L 
Sbjct: 119 IETFPNVRKVVSLALSTLYRLGKISKLAAALE 150

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 66.4 bits (161), Expect = 1e-13
 Identities = 19/119 (15%), Positives = 45/119 (37%), Gaps = 7/119 (5%)

Query: 223 VVIMLVIDRENDRVLLSRQSR----FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
                + +    ++L++R++     +     + + G  + GES E+AV R    E G+E+
Sbjct: 4   AFSSWLFN-AKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEI 62

Query: 279 GEVVYHTSQPWPVGPNSMP--CQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKAL 335
                          +        +   +A   +  + ++ +E+ D +W    DV   +
Sbjct: 63  TPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGI 121

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]} Length = 186

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

 Score = 65.5 bits (159), Expect = 4e-13
 Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 7/141 (4%)

Query: 213 KKRIYPRVDP--VVIMLVIDRENDRVLLSRQSRFVPRM--WSCIAGFIEPGESLEEAVRR 268
            +R+Y R+ P     ++++   +D ++L R+              G I+PGES+ EA  R
Sbjct: 36  VRRVYERMRPTNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANR 95

Query: 269 ETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSR 328
           E  EE G    ++ +           S    ++V    Y     +  D+ E         
Sbjct: 96  ELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLYP--ESLEGDEPEPLPQVRWPL 153

Query: 329 EDVKKALTFAEYIKAQRTAAA 349
             +   L   ++ +A R  +A
Sbjct: 154 AHMMDLLEDPDFNEA-RNVSA 173

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 64.1 bits (155), Expect = 5e-13
 Identities = 23/124 (18%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 215 RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPR-MWSCIAGFIEPGESLEEAVRRETWEE 273
             Y  +D ++     +     +LL +++       WS + GF++  ES+++A +R   E 
Sbjct: 8   TFYLGIDCIIFG--FNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAEL 65

Query: 274 TGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKK 333
           TG+E   +    +       +     + + +YA     E + +  +  +A W +  ++  
Sbjct: 66  TGLENVYMEQVGAFGAI-DRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPA 124

Query: 334 ALTF 337
            L F
Sbjct: 125 -LIF 127

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]} Length = 137

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.2 bits (150), Expect = 2e-12
 Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 1/133 (0%)

Query: 220 VDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG 279
           V    +++          L  Q+ + P  W+   G ++PGE   +A  RET EE  I   
Sbjct: 2   VKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKE 61

Query: 280 EVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINV-DKEELEDARWHSREDVKKALTFA 338
           ++  H      +   +      V ++    +   +V    E ++ +W   ED  K   +A
Sbjct: 62  QLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIADYA 121

Query: 339 EYIKAQRTAAAKV 351
           E     R  +A +
Sbjct: 122 EMGSLLRKFSAFL 134

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

 Score = 62.9 bits (152), Expect = 2e-12
 Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 10/137 (7%)

Query: 223 VVIMLVIDRENDRVLLSR----QSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           VV   + + +  ++ + R    +S F   +   + G ++ GE+ EEA RRE  EE  +E+
Sbjct: 30  VVNAFLRNSQG-QLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEI 88

Query: 279 GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFA 338
             + +     +     ++   + V  Y          +  ++    W + E +   +   
Sbjct: 89  DALSWRPLASFSPFQTTLSSFMCV--YELRSDATPIFNPNDISGGEWLTPEHLLARIAAG 146

Query: 339 EYIKAQRTAAAKVEQMC 355
           E   A +   A++ + C
Sbjct: 147 E---AAKGDLAELVRRC 160

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 62.0 bits (150), Expect = 7e-12
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 17/123 (13%)

Query: 216 IYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEET 274
           ++       +   +      +L+    RF         GF++  + SLEE ++RE  EE 
Sbjct: 27  LHAP-SQAKLFDRVPIRR-VLLM--MMRF-DGRLGFPGGFVDTRDISLEEGLKRELEEEL 81

Query: 275 GIEV-----GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFE-INVDKEELEDARWHSR 328
           G  +      E  Y +SQ         P + +  FY      E I   + E  +A+ H  
Sbjct: 82  GPALATVEVTEDDYRSSQVRE-----HPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGL 136

Query: 329 EDV 331
           E +
Sbjct: 137 EVM 139

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 209

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 62.0 bits (150), Expect = 8e-12
 Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 9/131 (6%)

Query: 214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSRFV-------PRMWSCIAGFIEPGESLEEAV 266
           +R         ++L  D   D V+L  Q R         P +   +AG IE GES+E+  
Sbjct: 50  RREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVA 109

Query: 267 RRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELED--AR 324
           RRE  EE G+ V       S     G  S    +MVG      +  I+   +E ED    
Sbjct: 110 RREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVH 169

Query: 325 WHSREDVKKAL 335
             SRE   + +
Sbjct: 170 VVSREQAYQWV 180

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 59.0 bits (142), Expect = 4e-11
 Identities = 20/118 (16%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 222 PVVIMLVIDRENDRVLLSRQS----RFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE 277
               ++V D    ++L+ R++         + +   G ++  E L E+ RRE  EE GI 
Sbjct: 31  RATYIVVHDGMG-KILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIA 89

Query: 278 VGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKAL 335
                 H    +        C++    ++        + ++E+ +  W + E++    
Sbjct: 90  GVPFAEHGQFYFED----KNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARC 143

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

 Score = 54.9 bits (131), Expect = 5e-10
 Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 8/118 (6%)

Query: 224 VIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281
           + + +I  EN+ + ++R++    +        G IE GE+ E+AV RE  EE GI     
Sbjct: 6   IAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHF 65

Query: 282 VYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAE 339
                  +       P + +  ++   + +E     +E +   W S   +  A  F  
Sbjct: 66  SLFEKLEYE-----FPDRHITLWFWLVERWEGEPWGKEGQPGEWMSLVGL-NADDFPP 117

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} Length = 165

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

 Score = 46.7 bits (110), Expect = 7e-07
 Identities = 25/130 (19%), Positives = 43/130 (33%), Gaps = 22/130 (16%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281
             V + +++ +  ++  + +    P  W    G I+ GE    A  RE  EETG+   EV
Sbjct: 15  RNVGICLMNNDK-KIFAASRLDI-PDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEV 72

Query: 282 VYHTSQPWPV---------------GPNSMPCQLMVGFYAYAKSFEINV-----DKEELE 321
           +                               Q    F    +  EIN+     +K E  
Sbjct: 73  IAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFG 132

Query: 322 DARWHSREDV 331
           +  W + E +
Sbjct: 133 EWSWVTPEQL 142

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 45.2 bits (106), Expect = 3e-06
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 224 VIMLVIDRENDRVLLSRQS---RFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280
           V++ +    + RVLL+ +S          +   G ++ GE+  +A  RE  EE  ++   
Sbjct: 35  VLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAA 94

Query: 281 VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
           V           P       ++G  A      + V  E  +
Sbjct: 95  VTLLGELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPEVAQ 135

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (105), Expect = 9e-06
 Identities = 17/149 (11%), Positives = 41/149 (27%), Gaps = 35/149 (23%)

Query: 220 VDPVVIMLVIDRENDRVLLSRQSRFVPRM----------WSCIAGFIEPGESLEEAVRRE 269
            DP++     D   ++++     + + +           W+   G ++PGE +   ++RE
Sbjct: 113 ADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKRE 172

Query: 270 TWEETGIEVGEV-------------------VYHTSQPWPVGPNSMPCQLMVGFYAY--- 307
             EE    + +                    +           N+    +      Y   
Sbjct: 173 FGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDE 232

Query: 308 ---AKSFEINVDKEELEDARWHSREDVKK 333
                   +    ++    +W    D  K
Sbjct: 233 TGEIMDNLMLEAGDDAGKVKWVDINDKLK 261

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 142

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 15/124 (12%), Positives = 33/124 (26%), Gaps = 5/124 (4%)

Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSR--QSRFVPRMWSCIAGFIEPGESLEEAVRRET 270
           +K          ++        ++LL +   S  +  +W   +   EP E L+     + 
Sbjct: 6   RKPPREESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQE 65

Query: 271 WEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSRED 330
            +     +               + +     V                    ARW ++E+
Sbjct: 66  LQRWAGPLPATHLRHLGEVVHTFSHIKLTYQV---YGLALEGQTPVTTVPPGARWLTQEE 122

Query: 331 VKKA 334
              A
Sbjct: 123 FHTA 126

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	417
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.93
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.84
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.81
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.8
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.79
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.78
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.77
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.74
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.74
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.73
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.73
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.73
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.72
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.72
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.71
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.71
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.71
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.7
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.69
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.69
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.67
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.67
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.66
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.61
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.6
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.45
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.37
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.36
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.27
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	98.93
d1vk6a3	97	NADH pyrophosphatase {Escherichia coli [TaxId: 562	97.51
d1vk6a4	29	NADH pyrophosphatase intervening domain {Escherich	97.37
d2k4xa1	55	Ribosomal protein S27ae {Thermoplasma acidophilum	93.23
d1pvma3	36	Hypothetical protein Ta0289 C-terminal domain {Arc	83.22
d2ct7a1	73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	81.44
d1dgsa1	181	NAD+-dependent DNA ligase, domain 3 {Thermus filif	80.77

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.4e-25  Score=192.57  Aligned_cols=125  Identities=39%  Similarity=0.666  Sum_probs=109.3

Q ss_pred             CcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCc
Q 014873          219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC  298 (417)
Q Consensus       219 r~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~  298 (417)
                      ++.|+|++++.+  ++++||+||.+.++|.|++|||+||+|||+++||+||++||||+++....+++...+..     ..
T Consensus         1 ~i~paViv~i~~--~~~vLL~~~~~~~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~-----~~   73 (131)
T d1vk6a2           1 QIAPCIIVAIRR--DDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPF-----PQ   73 (131)
T ss_dssp             CCEEEEEEEEEE--TTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEET-----TE
T ss_pred             CcccEEEEEEEe--CCEEEEEEeccCCCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeEEEEeccCc-----Cc
Confidence            478999888876  68999999988778999999999999999999999999999999999888888877663     46


Q ss_pred             EEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhccccccccccccccCCCCCc
Q 014873          299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPI  378 (417)
Q Consensus       299 ~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~~~~~~er~~~~~~~~k~~~~~~~~~  378 (417)
                      .+++.|.+.....++.+++.|+.+++||++++++.                                             
T Consensus        74 ~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~---------------------------------------------  108 (131)
T d1vk6a2          74 SLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPL---------------------------------------------  108 (131)
T ss_dssp             EEEEEEEEEEEECCCCCCTTTEEEEEEEETTSCCS---------------------------------------------
T ss_pred             eEEEEEEEEEcCCcccCCCccEEEEEEEcHHHHhh---------------------------------------------
Confidence            78888888888788888889999999999988653                                             


Q ss_pred             cCCccchHHHHHHHHHhc
Q 014873          379 FIPGPFAIAHHLISSWVY  396 (417)
Q Consensus       379 ~lP~~faIA~~Li~~w~~  396 (417)
                       +|+..+|+++||+.|+.
T Consensus       109 -l~~~~~i~r~li~~~l~  125 (131)
T d1vk6a2         109 -LPPPGTVARRLIEDTVA  125 (131)
T ss_dssp             -CCCTTSHHHHHHHHHHH
T ss_pred             -CCCChHHHHHHHHHHHH
Confidence             57777999999999985

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.84  E-value=3.9e-21  Score=167.95  Aligned_cols=136  Identities=18%  Similarity=0.195  Sum_probs=100.2

Q ss_pred             cccCCcCcEEEEEE--EecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 014873          215 RIYPRVDPVVIMLV--IDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV  291 (417)
Q Consensus       215 ~~ypr~~pvVivlv--i~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~  291 (417)
                      ..+|++...|-++|  +++++.+|||+||.. +..|.|.+|||+||+|||+++||+||++||||+++..+..++....+.
T Consensus         4 ~~~p~~~v~Vd~Vi~~~~~~~~~vLLv~R~~~p~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~   83 (147)
T d2fb1a2           4 SSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAID   83 (147)
T ss_dssp             TTSCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCTT
T ss_pred             CCCCCcceEEEEEEEEEeCCcCEEEEEEccCCCCCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccceeeeeEecCCc
Confidence            34566555553333  344445899999985 457999999999999999999999999999999998888887765443


Q ss_pred             CCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHH
Q 014873          292 GPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQ  353 (417)
Q Consensus       292 ~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~  353 (417)
                      ...+ ...+.+.|++...........+|.++++||+++++++ |+|||.. ....++++|+.
T Consensus        84 ~~~~-~~~v~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~lp~-lafDH~~-ii~~a~~~lr~  142 (147)
T d2fb1a2          84 RDPG-ERVVSIAYYALININEYDRELVQKHNAYWVNINELPA-LIFDHPE-MVDKAREMMKQ  142 (147)
T ss_dssp             SSSS-SCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCCC-BSTTHHH-HHHHHHHHHHH
T ss_pred             ccCC-CceEEEEEEEEecCCcccCCCcchhheEEecHHhchh-cccCHHH-HHHHHHHHHHH
Confidence            2211 3456777888776555555567889999999999997 7888754 44555555544

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=3e-19  Score=151.27  Aligned_cols=120  Identities=28%  Similarity=0.365  Sum_probs=86.8

Q ss_pred             EEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEE
Q 014873          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV  302 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i  302 (417)
                      .+.++|++ ++++|||+|+.   .|.|++|||++|+|||+++||+||++||||+++..+.+++...+..+..  ......
T Consensus         4 ~agavv~~-~~~~vLl~~~~---~g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~--~~~~~~   77 (126)
T d1vcda1           4 GAGGVVFN-AKREVLLLRDR---MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKG--VEREVH   77 (126)
T ss_dssp             EEEEEEEC-TTSCEEEEECT---TSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTS--CEEEEE
T ss_pred             EEEEEEEE-CCCEEEEEEcC---CCCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEEEeeeeeccCCC--eEEEEE
Confidence            34455555 46899999876   4899999999999999999999999999999998777776655443211  122223


Q ss_pred             EEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHH
Q 014873          303 GFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAK  350 (417)
Q Consensus       303 ~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~  350 (417)
                      .|.+... ..... .+|+.+++|++++++.+++.+++.+..+..+.++
T Consensus        78 ~~~~~~~-~~~~~-~~e~~~~~W~~~~e~~~~~~~~~~~~il~~~~~~  123 (126)
T d1vcda1          78 WFLMRGE-GAPRL-EEGMTGAGWFSPEEARALLAFPEDLGLLEVALER  123 (126)
T ss_dssp             EEEEEEE-SCCCC-CTTCCEEEEECHHHHHHHBCSHHHHHHHHHHHHH
T ss_pred             EEEEEEc-CCCCC-CccceEEEEEEHHHHhhccCChHHHHHHHHHHHh
Confidence            3333333 23333 4788999999999999999888877666655443

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.80  E-value=2e-19  Score=157.20  Aligned_cols=126  Identities=20%  Similarity=0.259  Sum_probs=94.2

Q ss_pred             CCCCcccCCcCcEEEEEEEecCCCEEEEEEecCC-----CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEE
Q 014873          211 SCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRF-----VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT  285 (417)
Q Consensus       211 ~C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~-----~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~  285 (417)
                      .|.+.++|....++.+++++. +++|||+||...     .+|.|++|||+||+|||+++||+||++||||+++..+.+++
T Consensus         2 ~~~~~~~p~~~~a~~~vi~~~-~g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~i~   80 (158)
T d1sjya_           2 HDERTHVPVELRAAGVVLLNE-RGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLG   80 (158)
T ss_dssp             CSCCCCCCCCEEEEEEEEBCT-TCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEE
T ss_pred             CCccccCCCceeEEEEEEEeC-CCEEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceeeEEEE
Confidence            467788987666666666654 689999998742     35899999999999999999999999999999998888887


Q ss_pred             EeecCCCCCCCCcEEEEEEEEEEeccc-c-cCCcccccceEEEehhhHHHHhhhhh
Q 014873          286 SQPWPVGPNSMPCQLMVGFYAYAKSFE-I-NVDKEELEDARWHSREDVKKALTFAE  339 (417)
Q Consensus       286 s~~~~~~~~~~p~~l~i~f~a~~~~~~-~-~~~~~E~~~a~Wf~~del~~~L~~~~  339 (417)
                      ...+.+...  .......|++...... . ....+|+.+++||+++++.+++..+.
T Consensus        81 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~~  134 (158)
T d1sjya_          81 AYLGRFPDG--VLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAAGQ  134 (158)
T ss_dssp             EEEEECTTS--CEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHTTC
T ss_pred             EEEEECCCC--CEEEEEEEEEEEcCCcccCCCCCcceEEEEEEEHHHHhhhhhCCc
Confidence            766654322  1234455555544332 2 23357999999999999998766544

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.79  E-value=6.9e-19  Score=151.54  Aligned_cols=101  Identities=27%  Similarity=0.342  Sum_probs=76.5

Q ss_pred             CCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEecc
Q 014873          233 NDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSF  311 (417)
Q Consensus       233 ~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~~  311 (417)
                      +++|||+||.+ ...|.|++|||++|.|||+++||+||++||||+++....+++...+...... .....+.|.+.....
T Consensus        13 ~~k~Llv~r~~~~~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   91 (146)
T d2b0va1          13 DDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNG-TTYLRFTFSGQVVSF   91 (146)
T ss_dssp             TTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTT-EEEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEecCCCCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceEEEEEEEecCCCC-eEEEEEEEEEEeecC
Confidence            68999999986 3467899999999999999999999999999999987777666555433222 233444555554433


Q ss_pred             c-ccCCcccccceEEEehhhHHHH
Q 014873          312 E-INVDKEELEDARWHSREDVKKA  334 (417)
Q Consensus       312 ~-~~~~~~E~~~a~Wf~~del~~~  334 (417)
                      . ....++|+.+++|++++++.+.
T Consensus        92 ~~~~~~~~E~~~~~W~~~~el~~~  115 (146)
T d2b0va1          92 DPDRKLDTGIVRAAWFSIDEIRAK  115 (146)
T ss_dssp             CTTSCCCTTEEEEEEEEHHHHHHT
T ss_pred             CCCCCCCcceeEEEEeeHHHHhhC
Confidence            2 2334578999999999999873

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.78  E-value=1.5e-18  Score=147.39  Aligned_cols=117  Identities=23%  Similarity=0.253  Sum_probs=84.0

Q ss_pred             CCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC-CCCCCcEEEEEEEEEEecc
Q 014873          233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG-PNSMPCQLMVGFYAYAKSF  311 (417)
Q Consensus       233 ~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~-~~~~p~~l~i~f~a~~~~~  311 (417)
                      +.++||++|.. .+|.|.+|||++|+|||+.+||+||++||||+++..+.......+... ...........|++.....
T Consensus        16 ~~~~Ll~~r~~-~~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (137)
T d1ktga_          16 KIEFLLLQASY-PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNP   94 (137)
T ss_dssp             EEEEEEEEESS-TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEEEEEEEEEEEECSC
T ss_pred             CEEEEEEEEcC-CCCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeeeeeeeeeeeecCCCcceEEEEEEEEEecCC
Confidence            44789998864 468999999999999999999999999999999877665544333211 1111222333343344333


Q ss_pred             -cccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHH
Q 014873          312 -EINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKV  351 (417)
Q Consensus       312 -~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l  351 (417)
                       ++.+ .+|+.+++||+++++.+.+.+++.+..++++.+.|
T Consensus        95 ~~~~~-~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~L  134 (137)
T d1ktga_          95 DDVQL-SHEHQNWKWCELEDAIKIADYAEMGSLLRKFSAFL  134 (137)
T ss_dssp             CCCCC-CTTEEEEEEECHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             CCcCC-CcceEEEEEEEHHHHHHhcCCHHHHHHHHHHHHHh
Confidence             3333 47899999999999999888888887777776665

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.77  E-value=1.2e-18  Score=159.81  Aligned_cols=120  Identities=23%  Similarity=0.367  Sum_probs=85.7

Q ss_pred             CCCcccCCcCcEEEEEE--EecCCC--EEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeec--cEEEE
Q 014873          212 CKKRIYPRVDPVVIMLV--IDREND--RVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG--EVVYH  284 (417)
Q Consensus       212 C~~~~ypr~~pvVivlv--i~~~~~--kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~--~v~~~  284 (417)
                      |....||++.+.|-++|  ++.+++  +|||+||.+ +..|.|++|||+||+|||+++||+||++||||+++.  .+..+
T Consensus        28 ~~~~~y~~P~v~vd~vi~~~~~~~~~l~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l~~~  107 (202)
T d2fmla2          28 QELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQL  107 (202)
T ss_dssp             SCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEE
T ss_pred             ccCCCCCCCccEEEEEEEEEecCCCeeEEEEEEecCCCCCCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeecceeeee
Confidence            34456888766554443  343333  799999986 457999999999999999999999999999999864  45555


Q ss_pred             EEeecCCCCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHH
Q 014873          285 TSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKK  333 (417)
Q Consensus       285 ~s~~~~~~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~  333 (417)
                      .....+... ...+.+.+.|++....+.+ ...+|..+++||++++++.
T Consensus       108 ~~~~~~~r~-~~~~~i~~~~~~~~~~~~~-~~~~e~~~~~Wf~ld~l~~  154 (202)
T d2fmla2         108 HSFSRPDRD-PRGWVVTVSYLAFIGEEPL-IAGDDAKEVHWFNLERHGQ  154 (202)
T ss_dssp             EEECCTTSS-TTSSEEEEEEEEECCCCCC-CCCTTEEEEEEEEEEEETT
T ss_pred             eecccCCcc-ccceEEEEEEEEEeCCCCc-CCCcceeeEEEEeHHHCcc
Confidence            554333211 1124566777776654444 3458999999999999875

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.74  E-value=8.8e-18  Score=146.89  Aligned_cols=108  Identities=21%  Similarity=0.350  Sum_probs=81.7

Q ss_pred             EEEEEEEecCCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEE
Q 014873          223 VVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL  300 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l  300 (417)
                      +.+++|++.+++++||++|..  ...+.|++|||+||+|||+++||.||++||||+++....+++...++....  ...+
T Consensus        10 ~~~~~i~~~~~~~lLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~--~~~~   87 (155)
T d2b06a1          10 TNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDTG--GRYI   87 (155)
T ss_dssp             EEEEEEEETTTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTS--CEEE
T ss_pred             EEEEEEEECCCCEEEEEEECCCCCCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEEEEEEEeecCCC--CeEE
Confidence            445567777788999999874  233679999999999999999999999999999998888777776665322  2345


Q ss_pred             EEEEEEEEecccccCCcccccceEEEehhhHHHH
Q 014873          301 MVGFYAYAKSFEINVDKEELEDARWHSREDVKKA  334 (417)
Q Consensus       301 ~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~  334 (417)
                      ++.|.+....+.  +...|..+++||++++++++
T Consensus        88 ~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~l  119 (155)
T d2b06a1          88 VICYKATEFSGT--LQSSEEGEVSWVQKDQIPNL  119 (155)
T ss_dssp             EEEEEECEEEEC--CCCBTTBEEEEEEGGGGGGS
T ss_pred             EEEEEEEecCCc--cCCCchheEEEEEHHHhccC
Confidence            556665433333  34568889999999999884

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.74  E-value=1.4e-17  Score=143.43  Aligned_cols=127  Identities=21%  Similarity=0.205  Sum_probs=85.1

Q ss_pred             cccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC-CC
Q 014873          215 RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV-GP  293 (417)
Q Consensus       215 ~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~-~~  293 (417)
                      ..|.. .+++.++|.+.++..+||.++.   .|.|++|||+||+|||+++||+||++||||+++....+++...... ..
T Consensus        12 ~~y~~-r~~~~~vi~~~~~~~lll~~~~---~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   87 (147)
T d2azwa1          12 LTYQT-RYAAYIIVSKPENNTMVLVQAP---NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSN   87 (147)
T ss_dssp             SCCEE-CCEEEEECEEGGGTEEEEEECT---TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEET
T ss_pred             cccCC-CCeEEEEEEECCCCEEEEEEcC---CCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeEEEEEEEEeeec
Confidence            44432 2455666777766677777654   5799999999999999999999999999999987666655443222 12


Q ss_pred             CCCCcEEEEE--EEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHH
Q 014873          294 NSMPCQLMVG--FYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRT  346 (417)
Q Consensus       294 ~~~p~~l~i~--f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~  346 (417)
                      ........+.  |.+..... .....+|..+++|++++++.+.+.+++.+.++..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~e~~~~l~~~~~r~~l~~  141 (147)
T d2azwa1          88 HRQTAYYNPGYFYVANTWRQ-LSEPLERTNTLHWVAPEEAVRLLKRGSHRWAVEK  141 (147)
T ss_dssp             TTTEEEEEEEEEEEEEEEEE-CSSCC-CCSEEEEECHHHHHHHBSCHHHHHHHHH
T ss_pred             cCCceEEEEEEEEEEEeccc-cCCCCccceEEEEEEHHHHHHHcCChhHHHHHHH
Confidence            2222222333  33332222 2334478899999999999998888776655443

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.1e-17  Score=146.55  Aligned_cols=108  Identities=19%  Similarity=0.311  Sum_probs=77.0

Q ss_pred             EEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeec--cEEEEEEeec--C--CCCCCCC-
Q 014873          226 MLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG--EVVYHTSQPW--P--VGPNSMP-  297 (417)
Q Consensus       226 vlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~--~v~~~~s~~~--~--~~~~~~p-  297 (417)
                      ++|.+ .+++|||+||++ +.+|.|++|||+|++|||+++||+||++||||+++.  .+.+++...+  +  ....... 
T Consensus        23 ~vi~~-~~~~vLL~kR~~~~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (160)
T d1ryaa_          23 FIVEN-SRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTT  101 (160)
T ss_dssp             EEEEC-TTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTTBSSSCE
T ss_pred             EEEEe-CCCeEEEEEeCCCCCCCcEecccccccCCCcHHHHHHHHHHHHhCceEeeeeeeEEEEEEEeccccccCCCcce
Confidence            33444 468999999985 457899999999999999999999999999999864  3444433322  1  1111111 


Q ss_pred             cEEEEEEEEEEecccccCCcccccceEEEehhhHHHH
Q 014873          298 CQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKA  334 (417)
Q Consensus       298 ~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~  334 (417)
                      +.+.+.|.+..........++|+.+++|++++++.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~E~~e~~W~~~~el~~~  138 (160)
T d1ryaa_         102 HYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLAS  138 (160)
T ss_dssp             EEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHC
T ss_pred             EEEEEEEEEEecCCCccCCCcceEEEEEEEHHHhhcC
Confidence            2344555555555666666789999999999999863

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.9e-18  Score=148.91  Aligned_cols=108  Identities=22%  Similarity=0.315  Sum_probs=75.8

Q ss_pred             EEEEEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEE
Q 014873          223 VVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLM  301 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~  301 (417)
                      +++++|++  +++|||++|++ +..|+|++|||++|+|||+++||+||++||||+++..+..++...+.+....  . .+
T Consensus         7 ~~~v~i~~--~~~vLL~~r~~~~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~--~-~~   81 (156)
T d1irya_           7 YTLVLVLQ--PQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEP--E-LM   81 (156)
T ss_dssp             EEEECEEC--SSEEEEEEESSSSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCEEEEEEEEETTCS--C-EE
T ss_pred             EEEEEEEE--CCEEEEEEecCCCCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccceEEEEEEEEEcCCCC--E-EE
Confidence            34444444  68999999986 4568999999999999999999999999999999987777766655543221  2 22


Q ss_pred             EEEEEEEecccccCCcccccceEEEehhhHHHHh
Q 014873          302 VGFYAYAKSFEINVDKEELEDARWHSREDVKKAL  335 (417)
Q Consensus       302 i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L  335 (417)
                      ..+++.+......+...|..+++||++++++..-
T Consensus        82 ~~~~~~~~~~~~~~~~~ee~~~~W~~~~~l~~~~  115 (156)
T d1irya_          82 DVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKD  115 (156)
T ss_dssp             EEEEECCCCBCSCCCCCSSEEEEEEETTCCCSTT
T ss_pred             EEEEEEEEeecCcccCCchhheEEeEHHHCCcCC
Confidence            2333333322222333455678999999998743

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=2.8e-17  Score=144.88  Aligned_cols=109  Identities=21%  Similarity=0.391  Sum_probs=83.2

Q ss_pred             cEEEEEEEecCCCEEEEEEecC---CCCCcEEee-eeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC
Q 014873          222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP  297 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~---~~~g~WslP-gG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p  297 (417)
                      .+|.+++++. +++|||+||..   ..+|+|.+| ||++++|||+++||+||++|||||+...+.+++...+...    .
T Consensus        31 ~~v~v~v~~~-~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~----~  105 (161)
T d2fkba1          31 RATYIVVHDG-MGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDK----N  105 (161)
T ss_dssp             EEEEEEEECS-SSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEET----T
T ss_pred             eEEEEEEEeC-CCCEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEEEEEEEeecC----C
Confidence            4666666665 78999999963   468999876 8999999999999999999999999887777776544321    1


Q ss_pred             cEEEEEEEEEEecccccCCcccccceEEEehhhHHHHh
Q 014873          298 CQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKAL  335 (417)
Q Consensus       298 ~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L  335 (417)
                      ......++.....+++.++++|+.+++|++++++.+++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~Ev~~~~w~~~~el~~~~  143 (161)
T d2fkba1         106 CRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARC  143 (161)
T ss_dssp             EEEEEEEEEEECCCCCCCCTTTEEEEEEECHHHHHTTG
T ss_pred             cEEEEEEEEEEECCCCcCChhHeeEEEEEeHHHHhhhh
Confidence            22333333334456777888999999999999998854

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.72  E-value=4.4e-18  Score=146.66  Aligned_cols=119  Identities=24%  Similarity=0.315  Sum_probs=80.3

Q ss_pred             CCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC-CCCCCcEEEEEEEEEEecc
Q 014873          233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG-PNSMPCQLMVGFYAYAKSF  311 (417)
Q Consensus       233 ~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~-~~~~p~~l~i~f~a~~~~~  311 (417)
                      +++|||+||..  .|.|.+|||++|+|||+++||+||++||||+++..+.......+.+. ...........+.......
T Consensus        11 d~kvLl~~r~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (152)
T d1k2ea_          11 NGKVLLVKHKR--LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVILEEVVKYPEET   88 (152)
T ss_dssp             TTEEEEEECTT--TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSEEEEEEEECSSCE
T ss_pred             CCEEEEEEEcC--CCeEECCeeEEeCCccHHHHHHHHHHHHHCCceeeeEEEEEEeccccccCcceEEEEEEEEecCCCc
Confidence            68999999864  68999999999999999999999999999999865443332222211 1111112222211110000


Q ss_pred             --------cccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHH
Q 014873          312 --------EINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQ  353 (417)
Q Consensus       312 --------~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~  353 (417)
                              ....+.+|+.+++|++++++.++..++..+.....+...+.+
T Consensus        89 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~  138 (152)
T d1k2ea_          89 HIHFDLIYLVKRVGGDLKNGEWIDVREIDRIETFPNVRKVVSLALSTLYR  138 (152)
T ss_dssp             EEEEEEEEEEEEEEECCCSCEEEEGGGGGGSCBSTTHHHHHHHHHHHHHH
T ss_pred             eEEEEEeEeeecCCCCcceEEEeEHHHHhhCCCCHHHHHHHHHHHHHHhh
Confidence                    112345789999999999999987778777777777766654

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=2.5e-17  Score=145.30  Aligned_cols=121  Identities=29%  Similarity=0.342  Sum_probs=79.2

Q ss_pred             CCCcccCCcCcEEEEEEEecCCCEEEEEEecCCC--CCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeec
Q 014873          212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW  289 (417)
Q Consensus       212 C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~--~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~  289 (417)
                      +.+....+ .++|++++++  +++|||+|+.|++  ...|++|||+||+|||+++||+||++||||+.+. +..++...-
T Consensus        16 ~~~~~v~~-~~aV~vl~~~--~~~vlLv~q~R~~~~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~~-~~~l~~~~~   91 (158)
T d1v8ya_          16 GRYEIVEH-KPAVAVIALR--EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGD-LTYLFSYFV   91 (158)
T ss_dssp             TTEEEEEE-CCEEEEEEEE--TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEEE-EEEEEEEES
T ss_pred             eeEEEEec-CCEEEEEEEE--CCEEEEEEeeecCCCCceEecchhhccccCCHHHHHHHHHHhhcCCcce-eeeecceec
Confidence            34434443 4456666665  5899999988754  3589999999999999999999999999999874 555544321


Q ss_pred             CCCCCCCCcEEEEEEEEEE-ecccccCCcccccceEEEehhhHHHHhhhhh
Q 014873          290 PVGPNSMPCQLMVGFYAYA-KSFEINVDKEELEDARWHSREDVKKALTFAE  339 (417)
Q Consensus       290 ~~~~~~~p~~l~i~f~a~~-~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~  339 (417)
                      ..+   .....+..|++.. .......+++|..++.|++++|+.+++..+.
T Consensus        92 ~~g---~~~~~~~~f~a~~~~~~~~~~d~~E~~ev~w~~~~e~~~~i~~g~  139 (158)
T d1v8ya_          92 SPG---FTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQRGE  139 (158)
T ss_dssp             CTT---TBCCEEEEEEEEEEEECC--------CEEEEECHHHHHHHHHTTS
T ss_pred             CCC---cceEEEEEEEEccccccccCCCCCeeEEEEEEEHHHHHHHHHCCC
Confidence            111   1223445555543 3344566677888999999999999876544

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=6.7e-17  Score=146.19  Aligned_cols=105  Identities=20%  Similarity=0.202  Sum_probs=80.8

Q ss_pred             CCEEEEEEecCCCCC--cEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEE-Ee
Q 014873          233 NDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAY-AK  309 (417)
Q Consensus       233 ~~kVLL~rr~~~~~g--~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~-~~  309 (417)
                      +++|||+|+.+++.+  .|++|||+||+|||+++||+||++||||+++..+.+++......+   +....+..|++. ..
T Consensus        58 ~~~vlLvrq~R~~~~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~l~~~~~~~g---~~~~~~~~~~a~~~~  134 (186)
T d1vhza_          58 DDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPS---YFSSKMNIVVAQDLY  134 (186)
T ss_dssp             TTEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTT---TCCCEEEEEEEEEEE
T ss_pred             CCEEEEEEeeecCCCceEeecccccCCCCcCHHHHHHHHHHHHhccccccceecceeecccc---ccceEEEEEEEEecc
Confidence            579999998875544  699999999999999999999999999999999998887644322   122344445554 33


Q ss_pred             cccccCCcccccceEEEehhhHHHHhhhhhH
Q 014873          310 SFEINVDKEELEDARWHSREDVKKALTFAEY  340 (417)
Q Consensus       310 ~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~  340 (417)
                      ......+++|..++.|++++++.+++..+.+
T Consensus       135 ~~~~~~de~E~~~~~~~~~~e~~~~i~~g~i  165 (186)
T d1vhza_         135 PESLEGDEPEPLPQVRWPLAHMMDLLEDPDF  165 (186)
T ss_dssp             ECCCCCCCSSCCCEEEEEGGGGGGGGGCTTT
T ss_pred             cccCCCCCCcEEEEEEEeHHHHHHHHHcCCC
Confidence            3445567788999999999999997765443

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.5e-17  Score=144.39  Aligned_cols=113  Identities=19%  Similarity=0.297  Sum_probs=80.3

Q ss_pred             EEEEEEEecCCCEEEEEEecC---CCCCcEEe-eeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEe---ecCCCCCC
Q 014873          223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ---PWPVGPNS  295 (417)
Q Consensus       223 vVivlvi~~~~~kVLL~rr~~---~~~g~Wsl-PgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~---~~~~~~~~  295 (417)
                      +|.++|++. +++|||+||+.   ..+|.|.+ |||+|++|||+++||+||++|||||++..+..+...   ...++...
T Consensus         4 a~~v~i~n~-~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~~~~~~y~~~~~~~~   82 (153)
T d1hzta_           4 AFSSWLFNA-KGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGI   82 (153)
T ss_dssp             CEEEEEECT-TCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSC
T ss_pred             EEEEEEEEC-CCEEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccceeccccccccccccc
Confidence            455667775 68999999963   46899986 999999999999999999999999998765543321   11111111


Q ss_pred             CCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhh
Q 014873          296 MPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTF  337 (417)
Q Consensus       296 ~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~  337 (417)
                      ....++..|.+ .....+.++++|+++++|+++++|.+++..
T Consensus        83 ~~~~~~~~~~~-~~~~~~~~~~~Ev~~~~W~~~~el~~~i~~  123 (153)
T d1hzta_          83 VENEVCPVFAA-RTTSALQINDDEVMDYQWCDLADVLHGIDA  123 (153)
T ss_dssp             EEEEECCEEEE-EBCSCCCCCTTTEEEEEEECHHHHHHHHHH
T ss_pred             cceeEEEEEEE-eeCCCccCChhheeEEEEeeHHHHHHHHHc
Confidence            11223333333 345677788889999999999999986543

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.9e-18  Score=145.11  Aligned_cols=103  Identities=19%  Similarity=0.207  Sum_probs=73.9

Q ss_pred             EEEEEecCCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEE
Q 014873          225 IMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV  302 (417)
Q Consensus       225 ivlvi~~~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i  302 (417)
                      ++++++ ++++|||+||..  ..+|+|++|||+||.|||+++|+.||++||||+++....++....+.+..   ....+.
T Consensus         8 v~ii~~-~~~~vLl~~R~~~~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~~~~~~~~~~~---~~~~~~   83 (129)
T d1puna_           8 VGIIRN-ENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPD---RHITLW   83 (129)
T ss_dssp             EEECBC-TTSCEEEBCCCSSCSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCCSEEEEEECSS---EEEEEE
T ss_pred             EEEEEE-CCCEEEEEEecCCCCCCCcEECCcceecCCCchhHHHHHHHHHHhCCccccceeeeEEeecccc---cceeEE
Confidence            344444 478999999874  35789999999999999999999999999999998766655555444321   122333


Q ss_pred             EEEEEEecccccCCcccccceEEEehhhHHH
Q 014873          303 GFYAYAKSFEINVDKEELEDARWHSREDVKK  333 (417)
Q Consensus       303 ~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~  333 (417)
                      .|.+....+  .+...|+.+++|++++++.+
T Consensus        84 ~~~~~~~~~--~~~~~E~~~~~W~~~~el~~  112 (129)
T d1puna_          84 FWLVERWEG--EPWGKEGQPGEWMSLVGLNA  112 (129)
T ss_dssp             EEECCCCSS--CCCTTSSSCCEEECGGGCCT
T ss_pred             EEEEeeccC--cCCCCccceEEEEEHHHccc
Confidence            333322222  33456889999999999876

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.8e-17  Score=138.02  Aligned_cols=102  Identities=22%  Similarity=0.184  Sum_probs=73.7

Q ss_pred             CCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEecc
Q 014873          232 ENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSF  311 (417)
Q Consensus       232 ~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~~  311 (417)
                      +++.+||.++.+ .+|.|++|||++|+|||+++||+||++||||+++....+.+.......   .....+..++......
T Consensus        23 ~~~~~lL~~~~~-~~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~   98 (135)
T d2fvva1          23 SEEEVLLVSSSR-HPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQER---KHRTYVYVLIVTEVLE   98 (135)
T ss_dssp             TCCEEEEEECSS-CTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETTT---TEEEEEEEEEEEEECS
T ss_pred             CCCEEEEEEEeC-CCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC---CccEEEEEEEEEeecC
Confidence            355677777654 468999999999999999999999999999999987777666544422   1222333333333333


Q ss_pred             cccCCcccccceEEEehhhHHHHhhh
Q 014873          312 EINVDKEELEDARWHSREDVKKALTF  337 (417)
Q Consensus       312 ~~~~~~~E~~~a~Wf~~del~~~L~~  337 (417)
                      ......+|+.+++||+++++.+++.+
T Consensus        99 ~~~~~~~e~~~~~W~~~~e~~~~l~~  124 (135)
T d2fvva1          99 DWEDSVNIGRKREWFKIEDAIKVLQY  124 (135)
T ss_dssp             SCHHHHHHCCCEEEEEHHHHHHHHTT
T ss_pred             CCCCCCCceeEEEEEEHHHHHHHHhc
Confidence            33334578889999999999998764

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.69  E-value=5.5e-17  Score=143.40  Aligned_cols=113  Identities=23%  Similarity=0.303  Sum_probs=76.1

Q ss_pred             CcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEee----cC------
Q 014873          221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQP----WP------  290 (417)
Q Consensus       221 ~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~----~~------  290 (417)
                      .+.|.++|++. +++|||+||.. .+|.|.+|||+||.|||+++||+||++||||+++..+.......    ++      
T Consensus        14 R~~Vg~vI~n~-~~~vLL~kR~~-~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   91 (165)
T d1jkna_          14 RRNVGICLMNN-DKKIFAASRLD-IPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREK   91 (165)
T ss_dssp             EEEEEEEEECT-TSCEEEEEESS-STTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEEEEECSSCEEEECCHHHHHH
T ss_pred             cccEEEEEEeC-CCEEEEEEEcC-CCCcccCccceEcCCCChhHHHHHHHHHhhccccccccccccccccccccceeece
Confidence            35666666664 68999999985 35899999999999999999999999999999986554322111    00      


Q ss_pred             ---CCCCCCCcEEEEEEEEEEecc--cccCC-----cccccceEEEehhhHHHHh
Q 014873          291 ---VGPNSMPCQLMVGFYAYAKSF--EINVD-----KEELEDARWHSREDVKKAL  335 (417)
Q Consensus       291 ---~~~~~~p~~l~i~f~a~~~~~--~~~~~-----~~E~~~a~Wf~~del~~~L  335 (417)
                         .............|+......  ++.+.     ..|+.+++||+++++++.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~~~~~W~~~~el~~~i  146 (165)
T d1jkna_          92 LNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLT  146 (165)
T ss_dssp             HHHHTCCCCSEEEECCEEEEECSCTTTCCSSCSSSSCCCEEEEEEECTTHHHHHS
T ss_pred             eeeeecCCccceeeEEEEEEEeCCCceeecCCCCCCCCeeEEeEECCHHHHHHhc
Confidence               001112223334444443332  23222     3488999999999999854

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.69  E-value=8.7e-17  Score=141.69  Aligned_cols=113  Identities=18%  Similarity=0.337  Sum_probs=81.8

Q ss_pred             cEEEEEEEecCCCEEEEEEecC---CCCCcEEee-eeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC
Q 014873          222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP  297 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~---~~~g~WslP-gG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p  297 (417)
                      .+|.++|++. ++++||+||..   ..+|+|++| ||+|++|||+++||+||++|||||++....++....+....... 
T Consensus        29 ~~v~~~v~~~-~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~-  106 (162)
T d2o5fa1          29 RVVNAFLRNS-QGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTL-  106 (162)
T ss_dssp             EEEEEEEECT-TSCEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEEEEEEEECTTTSSC-
T ss_pred             EEEEEEEEcC-CCCEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEEEEEEEeccccccc-
Confidence            4666666664 78999999863   578999876 99999999999999999999999998766655554444322222 


Q ss_pred             cEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhh
Q 014873          298 CQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTF  337 (417)
Q Consensus       298 ~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~  337 (417)
                      ...+..|.+. ....+.++++|+.+++|++++++.+++..
T Consensus       107 ~~~~~~~~~~-~~~~~~~~~~Ev~~~~W~~~eel~~~~~~  145 (162)
T d2o5fa1         107 SSFMCVYELR-SDATPIFNPNDISGGEWLTPEHLLARIAA  145 (162)
T ss_dssp             SSEEEEEEEE-CSSCCCCCTTTCSEEEEECHHHHHHHHHH
T ss_pred             eEEEEEEEEe-cCCCccCChhHeeEEEEeeHHHHHHHHHC
Confidence            2233344443 34566777899999999999999987654

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.67  E-value=2.5e-16  Score=144.28  Aligned_cols=121  Identities=17%  Similarity=0.198  Sum_probs=83.2

Q ss_pred             CcEEEEEEEecCCCEEEEEEecCCCCC--cEEeeeeecc-CCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC
Q 014873          221 DPVVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIE-PGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP  297 (417)
Q Consensus       221 ~pvVivlvi~~~~~kVLL~rr~~~~~g--~WslPgG~VE-~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p  297 (417)
                      .++|.++.++. +++|||+|+.+.+.+  .|++|||.|| +||++++||+||++||||++++.+.+++......+   +.
T Consensus        38 ~~~V~vl~~~~-~~~ilLvrq~R~~~~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~l~~~~~~~g---~~  113 (202)
T d1mqea_          38 FGAVAIVAMDD-NGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPG---FS  113 (202)
T ss_dssp             CCEEEEEECCT-TSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTT---TB
T ss_pred             CCeEEEEEECC-CCEEEEEEecccccCceEEeccccccccCCCCHHHHHHHHHhhccccccccceEeeeeeccCc---cC
Confidence            34566666664 689999999875544  7999999999 79999999999999999999999988887532222   22


Q ss_pred             cEEEEEEEEEEe--ccccc-CCcccccceEEEehhhHHHHhhhhhHHHHHH
Q 014873          298 CQLMVGFYAYAK--SFEIN-VDKEELEDARWHSREDVKKALTFAEYIKAQR  345 (417)
Q Consensus       298 ~~l~i~f~a~~~--~~~~~-~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~  345 (417)
                      ...+..|++...  ..... .+++|..+++|++++|+.+++..+.+.+...
T Consensus       114 ~~~~~~fla~~~~~~~~~~~~~eee~i~v~w~~~~e~~~~i~~G~I~d~~t  164 (202)
T d1mqea_         114 DESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRGEIVNSIA  164 (202)
T ss_dssp             CCCEEEEEEEEEEECCC----------CEEEEEHHHHHHHHTTTSCCCHHH
T ss_pred             CcEEEEEEEEeccccCCCCCCCccceEEEEEEEHHHHHHHHHcCCCCcHHH
Confidence            334444554422  22222 2334556799999999999988776665543

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.67  E-value=1.7e-17  Score=144.36  Aligned_cols=104  Identities=20%  Similarity=0.322  Sum_probs=69.0

Q ss_pred             cEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEE----EEEEeecCCCCCCCC
Q 014873          222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVV----YHTSQPWPVGPNSMP  297 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~----~~~s~~~~~~~~~~p  297 (417)
                      ||+.+++++.+.++|||+|+.+ ..+.|++|||++|.|||+++||+||++||||+++..+.    ++....        .
T Consensus         3 ~v~Gaii~~~~~~kvLLvk~~~-~~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~--------~   73 (151)
T d2a6ta2           3 PVRGAIMLDMSMQQCVLVKGWK-ASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTI--------R   73 (151)
T ss_dssp             CEEEEEEBCSSSSEEEEEEESS-TTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEEE--------T
T ss_pred             cEEEEEEEECCCCEEEEEEEeC-CCCCEECCcccccCCCCHHHHHHHHHHHHhCCCceeeeecceEEeecc--------c
Confidence            4666677776668999999864 46789999999999999999999999999999875322    111111        1


Q ss_pred             cEEEEEEEEEEeccc--c-cCCcccccceEEEehhhHHHH
Q 014873          298 CQLMVGFYAYAKSFE--I-NVDKEELEDARWHSREDVKKA  334 (417)
Q Consensus       298 ~~l~i~f~a~~~~~~--~-~~~~~E~~~a~Wf~~del~~~  334 (417)
                      ......|++.....+  . ..+.+|+.+++||++++++.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~Ei~~~~W~~~~el~~~  113 (151)
T d2a6ta2          74 GQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTF  113 (151)
T ss_dssp             TEEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTC
T ss_pred             CceEEEEEEEEeccCCcccccCCCccceEEEEEHHHhhhh
Confidence            112222333322222  2 224579999999999999874

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.2e-16  Score=136.01  Aligned_cols=136  Identities=23%  Similarity=0.291  Sum_probs=92.6

Q ss_pred             CCCcccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 014873          212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV  291 (417)
Q Consensus       212 C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~  291 (417)
                      ||.+.|.+--    +..++.++.++||+++.. ..+.|.+|||++++|||+++||+||++||||+.+..+..+....+..
T Consensus        11 ~g~i~f~~~~----~~~~~~~~~~~LL~~~~~-~~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~   85 (153)
T d1xsba_          11 CGLIIFRRCL----IPKVDNNAIEFLLLQASD-GIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKREL   85 (153)
T ss_dssp             EEEEEEEECS----SCSSSSTTEEEEEEEESS-TTCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEECSSCCEEE
T ss_pred             eEEEEEeccc----cccccCCCCEEEEEEecC-CCCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeeeeccceeee
Confidence            4556664311    112345578999998875 34679999999999999999999999999999987665443221111


Q ss_pred             C-CCCCCcEEEEEEEEEEeccccc-CCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHH
Q 014873          292 G-PNSMPCQLMVGFYAYAKSFEIN-VDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVE  352 (417)
Q Consensus       292 ~-~~~~p~~l~i~f~a~~~~~~~~-~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~  352 (417)
                      . ...........|++........ ...+|+.+++||+++++.+++.++..+.++..+.+.|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~iL~~~~~~L~  148 (153)
T d1xsba_          86 NYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAALQEGHQFLC  148 (153)
T ss_dssp             EEESSSCEEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHHHTCSHHHHHHHHHHHHHHT
T ss_pred             cccccCceeEEEEEEEEEeecccccCCCcceeEEEEEEHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence            0 0111233444555554433222 23478999999999999999988888888777766663

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=2.5e-15  Score=138.23  Aligned_cols=123  Identities=25%  Similarity=0.242  Sum_probs=87.9

Q ss_pred             ccCCcCcEEEEEEEecCCCEEEEEEecCCCC-------CcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEee
Q 014873          216 IYPRVDPVVIMLVIDRENDRVLLSRQSRFVP-------RMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQP  288 (417)
Q Consensus       216 ~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~-------g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~  288 (417)
                      .+.+.+ +|++++++.+.++|+|+||.|++.       -.|++|||.||+|||+++||+||++||||+++..+.+++...
T Consensus        53 v~~~~~-~v~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~l~~~~  131 (209)
T d1g0sa_          53 IFERGH-AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFL  131 (209)
T ss_dssp             EEECCC-EEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_pred             EEecCC-EEEEEEEEecCCeEEEEEEEeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccceeeccccc
Confidence            344444 455666666678999999987542       268999999999999999999999999999999999888763


Q ss_pred             cCCCCCCCCcEEEEEEEEEEecccc-----cCCcccccceEEEehhhHHHHhhhhhHHH
Q 014873          289 WPVGPNSMPCQLMVGFYAYAKSFEI-----NVDKEELEDARWHSREDVKKALTFAEYIK  342 (417)
Q Consensus       289 ~~~~~~~~p~~l~i~f~a~~~~~~~-----~~~~~E~~~a~Wf~~del~~~L~~~~~~~  342 (417)
                      -..+   .....+..|++.+.....     ..+++|..++.|++++|+.+++..+.+.+
T Consensus       132 ~spg---~~~e~~~~f~a~~~~~~~~~~~~~~de~E~iev~~v~~~e~~~~i~~g~I~d  187 (209)
T d1g0sa_         132 ASPG---GTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDN  187 (209)
T ss_dssp             SCTT---TBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTTSSCB
T ss_pred             cCCc---ccCCceEEEEEEEecccccCCCCCCCCCceeEEEEEeHHHHHHHHHcCCCCc
Confidence            2222   223455567766442221     22456777899999999999988766543

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.60  E-value=6.1e-16  Score=139.95  Aligned_cols=109  Identities=16%  Similarity=0.129  Sum_probs=79.5

Q ss_pred             cEEEEEEEecCCCEEEEEEecC---CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCc
Q 014873          222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC  298 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~---~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~  298 (417)
                      .+|.++++..++.+|||+||+.   ..+|.|+||||++|.|||+++||+||++|||||....+..++..+..+...+   
T Consensus        33 aaVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~lg~l~~~~~~~~---  109 (187)
T d1nqza_          33 AAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVG---  109 (187)
T ss_dssp             EEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETTT---
T ss_pred             cEEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEEeecccceeeccc---
Confidence            3455555555566899999984   4689999999999999999999999999999999999988887653322221   


Q ss_pred             EEEEEEEEEEecc--cccCCcccccceEEEehhhHHH
Q 014873          299 QLMVGFYAYAKSF--EINVDKEELEDARWHSREDVKK  333 (417)
Q Consensus       299 ~l~i~f~a~~~~~--~~~~~~~E~~~a~Wf~~del~~  333 (417)
                      ....-|++.+...  ....+.+|++++.|++++++..
T Consensus       110 ~~V~p~v~~l~~~~~~~~~~~~EV~~v~~vpl~~L~~  146 (187)
T d1nqza_         110 FHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRA  146 (187)
T ss_dssp             EEEEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHH
T ss_pred             cEEEEEEEEECCccccccccCCcceEEEeccHHHHhc
Confidence            2333345544332  2334567999999999999876

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=3.1e-13  Score=122.06  Aligned_cols=122  Identities=23%  Similarity=0.242  Sum_probs=85.3

Q ss_pred             cCCcCcEEEEEEEecCCCEEEEEEecCCCC--------CcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEee
Q 014873          217 YPRVDPVVIMLVIDRENDRVLLSRQSRFVP--------RMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQP  288 (417)
Q Consensus       217 ypr~~pvVivlvi~~~~~kVLL~rr~~~~~--------g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~  288 (417)
                      +.+.+ +|++++++..+++|||+|+.|++.        -.|.+|||.++ ||++++||+||+.||||+++..+.+++++ 
T Consensus        40 ~~~~~-aV~Vl~~~~~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~~lg~~-  116 (189)
T d1viua_          40 YDRGN-GATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFEL-  116 (189)
T ss_dssp             EECCC-EEEEEEEETTTTEEEEEEEECHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCEEEEEE-
T ss_pred             EecCC-EEEEEEEEcCCCEEEEEEeeccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEEEccee-
Confidence            34444 555666666678999999987431        25679999998 66689999999999999999999999876 


Q ss_pred             cCCCCCCCCcEEEEEEEEEEeccc----ccCCcccccceEEEehhhHHHHhhhhhHHHH
Q 014873          289 WPVGPNSMPCQLMVGFYAYAKSFE----INVDKEELEDARWHSREDVKKALTFAEYIKA  343 (417)
Q Consensus       289 ~~~~~~~~p~~l~i~f~a~~~~~~----~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a  343 (417)
                      |+. + ++....+..|++......    ...+++|..++.|++++|+.+++..+.+.++
T Consensus       117 ~~s-p-G~~~e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~~~e~~~~i~~g~i~da  173 (189)
T d1viua_         117 YMS-P-GGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDG  173 (189)
T ss_dssp             ESC-T-TTBCCEEEEEEEECCTTCC---------CCEEEEEEEHHHHHHHHHHTSCCBH
T ss_pred             ecC-c-cccCceEEEEEEEECCcccccCCCCCCCccEEEEEEEHHHHHHHHHcCCCCcH
Confidence            331 1 123456666777644221    1234567788999999999999887765443

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.37  E-value=1.2e-12  Score=110.21  Aligned_cols=106  Identities=15%  Similarity=0.224  Sum_probs=69.4

Q ss_pred             cEEEEEEEecCCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcE
Q 014873          222 PVVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQ  299 (417)
Q Consensus       222 pvVivlvi~~~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~  299 (417)
                      ++++++|++ ++++|||.||..  ...|+|++|+|.+|.+|+ ++++.||++||+|+++.....+++..+.|+.   ...
T Consensus         5 ~v~~~vi~~-~~g~iLl~kR~~~~~~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~~~l~~~~H~fsh---~~~   79 (127)
T d1rrqa2           5 PLAVAVLAD-DEGRVLIRKRDSTGLLANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELTEPIVSFEHAFSH---LVW   79 (127)
T ss_dssp             EEEEEEEEE-SSSEEEEEECCSSSTTTTCEECCEEECTTTCC-HHHHHHTTC----CEEEECSCCEEEEEECSS---EEE
T ss_pred             EEEEEEEEE-CCCEEEEEECCCCCCCCCceecccccccCCCC-HHHHHHHhhhhcceEEEeccccccceEecCC---eEE
Confidence            344455555 478999999874  457999999999998887 7899999999999998655555554444421   112


Q ss_pred             EEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhh
Q 014873          300 LMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFA  338 (417)
Q Consensus       300 l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~  338 (417)
                      .+..|.+.....     ..+..+.+|++++++.+ +.++
T Consensus        80 ~~~~~~~~~~~~-----~~~~~~~~Wv~~~el~~-~~~p  112 (127)
T d1rrqa2          80 QLTVFPGRLVHG-----GPVEEPYRLAPEDELKA-YAFP  112 (127)
T ss_dssp             EEEEEEEEEECC-----SCCCTTEEEEEGGGGGG-SCCC
T ss_pred             EEEEEEEEECCC-----CccccceEEeeHHHHhH-CCCC
Confidence            334455544332     23456899999999987 5554

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.6e-12  Score=124.86  Aligned_cols=112  Identities=17%  Similarity=0.228  Sum_probs=74.9

Q ss_pred             EEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeecc---------------------EEEEEEeecCCCC
Q 014873          235 RVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE---------------------VVYHTSQPWPVGP  293 (417)
Q Consensus       235 kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~---------------------v~~~~s~~~~~~~  293 (417)
                      +|||++|..  .|.|+||||+||+||++++||+||+.||||+.+..                     +.|.+....+...
T Consensus       140 qvLlIkR~d--~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~~~~~~~~~~~~~l~~l~~~~~~~~y~gyvddprnt  217 (292)
T d1q33a_         140 QFVAIKRKD--CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNT  217 (292)
T ss_dssp             EEEEEECTT--TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCC
T ss_pred             EEEEEEecC--CCcEeCCcccCCCCCCHHHHHHHHHHHHhCcccccccccccccccceeeeccccccccccccccccCCC
Confidence            699999864  68999999999999999999999999999997642                     2344444333221


Q ss_pred             CCCCcEEEEEEEEEEeccc----ccC-CcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHH
Q 014873          294 NSMPCQLMVGFYAYAKSFE----INV-DKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKV  351 (417)
Q Consensus       294 ~~~p~~l~i~f~a~~~~~~----~~~-~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l  351 (417)
                      . ......++|.+......    ..+ ..+|..+++|+++++++. |.++|.. .++.+.+++
T Consensus       218 d-~aw~etva~~~h~~~~~~~~~~~l~~~dEa~~v~W~~vde~~~-L~~~H~~-il~~aa~~~  277 (292)
T d1q33a_         218 D-NAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLK-LYASHSQ-FIKLVAEKR  277 (292)
T ss_dssp             S-SEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCC-CSTTHHH-HHHHHHHHH
T ss_pred             C-CCEEEEEEEEEEEcccccccccccCCCCchheEEEEEhhcccc-chhhHHH-HHHHHHHHH
Confidence            1 12344555555544322    112 357999999999999987 5666643 334443333

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.27  E-value=2.3e-13  Score=123.62  Aligned_cols=130  Identities=16%  Similarity=0.092  Sum_probs=81.0

Q ss_pred             ccCCCccee-ccCccceeecCCCCCCcccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCC-HHHHHH
Q 014873          190 GHCGEKTIP-KEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGES-LEEAVR  267 (417)
Q Consensus       190 ~~CG~~~~~-~~~g~~~~C~~~~C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEt-leeAa~  267 (417)
                      |+|.++-.. ...|++..|.    ...++|+  +.+++.++.. +..||+++|.   .|.|++|||+||+||+ +++||.
T Consensus         5 ~~~~~~~e~~~~~g~r~a~~----~~~~~~~--~~~~~~~~~~-~~~vl~~~r~---~g~~~~pgg~~~~~e~~~~~~~~   74 (196)
T d1u20a1           5 PRNISREESLQLEGYKHACH----ALLHAPS--QAKLFDRVPI-RRVLLMMMRF---DGRLGFPGGFVDTRDISLEEGLK   74 (196)
T ss_dssp             SEECCHHHHHSCSSCEEEEE----EEEEEEC--CCEETTTEEC-CEEEEEEEET---TSCEECSEEEECTTTSCHHHHHH
T ss_pred             ccccchhhhhccCCcceEEE----EEEEcCC--CceEEEEecC-CcEEEEEEec---CCcEECCccccCCCCCcHHHHHH
Confidence            445444322 2356777664    1255554  3333333332 5788998875   5999999999999996 899999


Q ss_pred             HHHHHHhCCeeccEE-----EEEEeecCCCCCCCCcEEEEEEEEEEeccc----------ccCCcccccceEEEehhhHH
Q 014873          268 RETWEETGIEVGEVV-----YHTSQPWPVGPNSMPCQLMVGFYAYAKSFE----------INVDKEELEDARWHSREDVK  332 (417)
Q Consensus       268 REv~EEtGl~v~~v~-----~~~s~~~~~~~~~~p~~l~i~f~a~~~~~~----------~~~~~~E~~~a~Wf~~del~  332 (417)
                      ||++||||+.+..+.     |+.+.....    ....+...|.+.+...+          ....+.|..++.|+++.++.
T Consensus        75 re~~ee~g~~~~~~~l~~~~~~~~~~~~~----~~~~v~~fy~~~~~~~~l~~~e~~~~~a~~~~~E~~~~~wVPl~~L~  150 (196)
T d1u20a1          75 RELEEELGPALATVEVTEDDYRSSQVREH----PQKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLR  150 (196)
T ss_dssp             HHHHHHHCGGGGGCCCCGGGEEEEEEECT----TSCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCT
T ss_pred             HHHHHHhCccceeEEEEeeEEEEeccCCC----CCEEEEEEEEEEcchHHhhhhhhcccccCcCCccccceeEEeHHHhc
Confidence            999999999876432     343332221    12344444554443221          12224678899999998876


Q ss_pred             H
Q 014873          333 K  333 (417)
Q Consensus       333 ~  333 (417)
                      +
T Consensus       151 d  151 (196)
T d1u20a1         151 D  151 (196)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=6.1e-09  Score=88.15  Aligned_cols=111  Identities=10%  Similarity=0.078  Sum_probs=73.1

Q ss_pred             EEEEEEEec--CCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCC--eeccEEEEEEeecCCCCCCC
Q 014873          223 VVIMLVIDR--ENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGI--EVGEVVYHTSQPWPVGPNSM  296 (417)
Q Consensus       223 vVivlvi~~--~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl--~v~~v~~~~s~~~~~~~~~~  296 (417)
                      .+++++.+.  .+++|||.||..  ...|+|++|+|.++.||+.++++.||..+|.+.  .+....+++...+.++.   
T Consensus        14 ~~~~vv~~~~~~~~~iLl~kR~~~g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~~~v~H~fsH---   90 (142)
T d1x51a1          14 SATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSH---   90 (142)
T ss_dssp             EEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSS---
T ss_pred             EEEEEEEecCCCCCEEEEEECCCCCCCCcceeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeeeeccceeccCC---
Confidence            334444442  267999999964  567999999999999999988777766555553  34455555555555431   


Q ss_pred             CcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhh
Q 014873          297 PCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAE  339 (417)
Q Consensus       297 p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~  339 (417)
                      ....+..|.+.+..+..  ...|..+.+|++++++.+ +.++.
T Consensus        91 ~~~~~~v~~~~~~~~~~--~~~~~~~~~W~~~~el~~-~~lp~  130 (142)
T d1x51a1          91 IKLTYQVYGLALEGQTP--VTTVPPGARWLTQEEFHT-AAVST  130 (142)
T ss_dssp             CEEEEEEEEEECSSCCC--CCCCCTTEEEEEHHHHHH-SCCCH
T ss_pred             cceEEEEEEEEEeCCCc--ccccCccCEEeeHHHccc-cCCCH
Confidence            12334555555544433  235778999999999987 45443

>d1vk6a3 d.113.1.4 (A:0-96) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=0.00016  Score=57.13  Aligned_cols=89  Identities=12%  Similarity=0.126  Sum_probs=62.1

Q ss_pred             CCCeEEEEEeCCceeeecCCCCCCCceeeccccchhhHHHhhhcCcCcccccEEEeeeeeCCCeeEEEEecCCCCccccc
Q 014873           62 SPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASE  141 (417)
Q Consensus        62 ~~~~~~l~f~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Lg~~~~~~~~~~a~~~~~~~~~~~~  141 (417)
                      ......++|++++.++..+ .       |..-+.+++.         +.....++||..  ++.|+|+++.+.       
T Consensus         9 ~d~g~W~v~~~~~L~L~~g-~-------lP~g~~~~l~---------l~~~~~~~iG~~--~g~p~~~v~~~~-------   62 (97)
T d1vk6a3           9 LDHGWWVVSHEQKLWLPKG-E-------LPYGEAANFD---------LVGQRALQIGEW--QGEPVWLVQQQR-------   62 (97)
T ss_dssp             TCEEEEEEEETTEEECGGG-S-------CCEEEGGGGT---------CTTCEEEEEEES--SSSEEEEEECCC-------
T ss_pred             ccceEEEEEeCCEEEeeCC-C-------CCCCchhhcC---------CCcceEEEeeeE--CCeEEEEEeeCC-------
Confidence            3467889999999888532 1       1122333331         234567899987  678999997542       


Q ss_pred             ccccccchhhhHHHHhhcchhhhhhHHHHHHHHHHHHHHhhhhccC
Q 014873          142 FGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSR  187 (417)
Q Consensus       142 ~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~A~~l~~W~~~~~  187 (417)
                          +..|++||++.. .      +...+.++++|.++.+|.++||
T Consensus        63 ----~~~~~~LR~ll~-~------~~~lF~lagRA~Qi~~w~rtHr   97 (97)
T d1vk6a3          63 ----RHDMGSVRQVID-L------DVGLFQLAGRGVQLAEFYRSHK   97 (97)
T ss_dssp             ----SSCEECTTHHHH-H------CHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ----CCCccCHHHHhC-C------CHHHHHHHHHHHHHHHHHHhcC
Confidence                234778999864 2      3357889999999999999986

>d1vk6a4 g.41.14.1 (A:97-125) NADH pyrophosphatase intervening domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: NADH pyrophosphatase intervening domain
family: NADH pyrophosphatase intervening domain
domain: NADH pyrophosphatase intervening domain
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=5.8e-05  Score=45.11  Aligned_cols=29  Identities=38%  Similarity=1.019  Sum_probs=27.4

Q ss_pred             ccccCCCcceeccCccceeecCCCCCCcccC
Q 014873          188 FCGHCGEKTIPKEAGKLKQCSNASCKKRIYP  218 (417)
Q Consensus       188 fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp  218 (417)
                      ||+.||.++.....+|...|.  .|..++||
T Consensus         1 fCGYCGh~Mh~s~tEwa~LC~--hC~eRYYP   29 (29)
T d1vk6a4           1 YCGYCGHEMYPSKTEWAMLCS--HCRERYYP   29 (29)
T ss_dssp             BCTTTCCBEEECSSSSCEEES--SSSCEECC
T ss_pred             CccccCCccccchhHHHHHHH--HHHhccCC
Confidence            899999999999999999997  69999997

>d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma acidophilum [TaxId: 2303]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein S27a
domain: Ribosomal protein S27ae
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=93.23  E-value=0.019  Score=39.75  Aligned_cols=33  Identities=24%  Similarity=0.573  Sum_probs=28.1

Q ss_pred             hccCccccCCCcceeccCccceeecCCCCCCcccC
Q 014873          184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP  218 (417)
Q Consensus       184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp  218 (417)
                      +..++||+||.-........|..|.  .|+...|-
T Consensus        16 r~~k~CP~CG~GvFmA~H~dR~~CG--KCgyTefk   48 (55)
T d2k4xa1          16 RKHRFCPRCGPGVFLAEHADRYSCG--RCGYTEFK   48 (55)
T ss_dssp             CSSCCCTTTTTTCCCEECSSEEECT--TTCCCEEC
T ss_pred             EecCcCcCCCCcEEeeecCCCcccc--CCcccEEe
Confidence            3468999999999888888899997  69998874

>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Hypothetical protein Ta0289 C-terminal domain
family: Hypothetical protein Ta0289 C-terminal domain
domain: Hypothetical protein Ta0289 C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=83.22  E-value=0.46  Score=28.70  Aligned_cols=29  Identities=38%  Similarity=0.937  Sum_probs=20.1

Q ss_pred             CccccCCCcce-e--ccCc--cceeecCCCCCCc
Q 014873          187 RFCGHCGEKTI-P--KEAG--KLKQCSNASCKKR  215 (417)
Q Consensus       187 ~fC~~CG~~~~-~--~~~g--~~~~C~~~~C~~~  215 (417)
                      ..||.||-... +  .+.|  ...+|++|.|...
T Consensus         2 hlcpkcgvgvl~pvy~~kgeikvfrcsnpacdye   35 (36)
T d1pvma3           2 HLCPKCGVGVLEPVYNEKGEIKVFRCSNPACDYE   35 (36)
T ss_dssp             CBCTTTSSSBEEEEECTTSCEEEEEESCTTCCCB
T ss_pred             ccCCccCceEEEEeecCCCcEEEEEcCCCccccC
Confidence            46999997753 3  2333  5778999999753

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: IBR domain
domain: Ring finger protein 31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.44  E-value=0.33  Score=35.12  Aligned_cols=30  Identities=17%  Similarity=0.397  Sum_probs=24.4

Q ss_pred             hccCccccCCCcceeccCccceeecCCCCCCc
Q 014873          184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR  215 (417)
Q Consensus       184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~  215 (417)
                      ..+++||.||..+....+....+|+  .|+..
T Consensus        16 ~~~k~CP~C~~~~~~~~~~~~~~C~--~C~~~   45 (73)
T d2ct7a1          16 PKFLWCAQCSFGFIYEREQLEATCP--QCHQT   45 (73)
T ss_dssp             CCEECCSSSCCCEECCCSCSCEECT--TTCCE
T ss_pred             CCCCCCCCCCCEeEECCCCCEEEcC--CCCCe
Confidence            4579999999999877777888996  58764

>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}

class: All alpha proteins
fold: SAM domain-like
superfamily: RuvA domain 2-like
family: NAD+-dependent DNA ligase, domain 3
domain: NAD+-dependent DNA ligase, domain 3
species: Thermus filiformis [TaxId: 276]

Probab=80.77  E-value=0.32  Score=41.54  Aligned_cols=27  Identities=30%  Similarity=0.883  Sum_probs=21.2

Q ss_pred             CccccCCCcceeccCccceeecCCCCCCc
Q 014873          187 RFCGHCGEKTIPKEAGKLKQCSNASCKKR  215 (417)
Q Consensus       187 ~fC~~CG~~~~~~~~g~~~~C~~~~C~~~  215 (417)
                      .+||.||+++..  .+...+|+|+.|...
T Consensus         4 ~~CP~C~s~l~~--e~~~~~C~n~~Cpaq   30 (181)
T d1dgsa1           4 EACPECGHRLVK--EGKVHRCPNPLCPAK   30 (181)
T ss_dssp             SBCTTTCCBCEE--ETTEEECCCTTCGGG
T ss_pred             CCCCCCCCeeee--cCceeECCCCCCHHH
Confidence            689999999975  344567999999753